Citrus Sinensis ID: 008276

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-
Protein Sequence
MKAVVLLCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASVEMNDQVQIIALPLRSSKCLTTGPKNVPPIV
Secondary Structure (PSIPRED)
cHHHHHHHHcccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHHHHHcccccccEEHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHcccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHcHHcccccccccHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccccccEEEEEccEEEEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccEEEEEccEEEEEEEcccccccHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MKAVVLLCRhfsttkpvQALVLSTQytllsgdacndildkypdikTLKKLHAQIIINQhlhsnpsiGLKLMRTYGacgqmvdtRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYknmsvhgfdpdcytypcvlkacsgsnsLLVGLQIHCSVVKVGldynlfngNGLVAMYGKCGCLKEARRVlndmpskdvvTWNSMVAGYAQNGRFDEALDVCREMeslrikpdadtmasllpsvtntspenVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEvhgiepnaiSVASVLPACGDLSALLLGRKIHRYVErkklqpnlrLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLmsglcpdsIAFVSVLSACshaglleeGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKqmpmepnerIWGSLVAACCLYSNMDIGILAADhifhlapnqsgyYVLLSNIYakagrwgdVKRVRKFMNskgikkmpgasvemnDQVQIIAlplrsskclttgpknvppiv
Flexible Loop (DISEMBL)
MKAVVLLCrhfsttkpvqaLVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASllpsvtntspenVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYverkklqpnlrlENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNskgikkmpgasvemNDQVQIIALplrsskclttgpknvppiv
Low Complexity Region (SEG)
MKAVVLLCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASVEMNDQVQIIALPLRSSKCLTTGPKNVPPIV
Disordered region (IsUnstruct)
***VVLLCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL**********************NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI***********DQVQIIALPL*****************
Disordered Region (DISOPRED)
MKAVVLLCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASVEMNDQVQIIALPLRSSKCLTTGPKNVPPIV
Disordered Region (DISEMBL)
MKAVVLLCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASVEMNDQVQIIALPLRSSKCLTTGPKNVPPIV
Disordered Region (DISPRO)
MKAVVLLCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASVEMNDQVQIIALPLRSSKCLTTGPKNVPPIV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKAVVLLCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASVEMNDQVQIIALPLRSSKCLTTGPKNVPPIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	571	2.2.26 [Sep-21-2011]
P0C899	686	Putative pentatricopeptid	yes	no	0.908	0.756	0.625	0.0
Q9SIL5	534	Pentatricopeptide repeat-	no	no	0.805	0.861	0.371	1e-102
Q9LTV8	694	Pentatricopeptide repeat-	no	no	0.893	0.734	0.343	1e-100
Q9LS72	600	Pentatricopeptide repeat-	no	no	0.882	0.84	0.365	2e-97
Q9SN39	871	Pentatricopeptide repeat-	no	no	0.879	0.576	0.369	4e-97
Q9LW63	715	Putative pentatricopeptid	no	no	0.872	0.696	0.333	3e-95
Q9LFL5	850	Pentatricopeptide repeat-	no	no	0.880	0.591	0.353	1e-93
Q9SIT7	697	Pentatricopeptide repeat-	no	no	0.774	0.634	0.382	7e-93
Q9M1V3	960	Pentatricopeptide repeat-	no	no	0.905	0.538	0.361	4e-92
Q9SS83	1028	Pentatricopeptide repeat-	no	no	0.887	0.493	0.342	5e-91

>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/521 (62%), Positives = 406/521 (77%), Gaps = 2/521 (0%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           +LD YPDI+TL+ +H++II+ + L  N S+G+KLMR Y +   +   R VFDEI  +NV+
Sbjct: 48  VLDTYPDIRTLRTVHSRIIL-EDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVI 106

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
             NV+IRSYVNN  Y + + V+  M      PD YT+PCVLKACS S ++++G +IH S 
Sbjct: 107 IINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSA 166

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
            KVGL   LF GNGLV+MYGKCG L EAR VL++M  +DVV+WNS+V GYAQN RFD+AL
Sbjct: 167 TKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDAL 226

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
           +VCREMES++I  DA TMASLLP+V+NT+ ENV+ VK+MF K+  K+LVSWNVMI VY  
Sbjct: 227 EVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMK 286

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N+MP EAV+LY +ME  G EP+A+S+ SVLPACGD SAL LG+KIH Y+ERKKL PNL L
Sbjct: 287 NAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLL 346

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
           ENAL+DMYAKCG L +AR VF+ M+ +DVVSWT+MISAYG SG+G DAVALFSK+  SGL
Sbjct: 347 ENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGL 406

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            PDSIAFV+ L+ACSHAGLLEEGR  FK+MT+ YK+ PR+EH AC+VDLLGRAGKV+EAY
Sbjct: 407 VPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAY 466

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
             I+ M MEPNER+WG+L+ AC ++S+ DIG+LAAD +F LAP QSGYYVLLSNIYAKAG
Sbjct: 467 RFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAG 526

Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
           RW +V  +R  M SKG+KK PGAS VE+N  +    +  RS
Sbjct: 527 RWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRS 567

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1

 Score =  372 bits (955), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/506 (37%), Positives = 304/506 (60%), Gaps = 46/506 (9%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRH---VFDEITNKNVVFFNVLIRS 104
           KK++A III  H  S  S  +  M  +  C ++ D  +   +F++++N NV  +N +IR+
Sbjct: 27  KKINASIII--HGLSQSSFMVTKMVDF--CDKIEDMDYATRLFNQVSNPNVFLYNSIIRA 82

Query: 105 YVNNYLYYDALHVYKNMSVHGFD-PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY 163
           Y +N LY D + +YK +    F+ PD +T+P + K+C+   S  +G Q+H  + K G  +
Sbjct: 83  YTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRF 142

Query: 164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME 223
           ++   N L+ MY K   L +A +V ++M  +DV++WNS+++GYA+ G+  +A        
Sbjct: 143 HVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKA-------- 194

Query: 224 SLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEA 283
                                        K +F  + +K +VSW  MI+ Y       EA
Sbjct: 195 -----------------------------KGLFHLMLDKTIVSWTAMISGYTGIGCYVEA 225

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM 343
           +D + +M++ GIEP+ IS+ SVLP+C  L +L LG+ IH Y ER+       + NAL++M
Sbjct: 226 MDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEM 285

Query: 344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
           Y+KCG +++A  +F QM  +DV+SW++MIS Y   G  + A+  F++M  + + P+ I F
Sbjct: 286 YSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITF 345

Query: 404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP 463
           + +LSACSH G+ +EG  YF +M + Y++ P+IEH+ CL+D+L RAGK+E A ++ K MP
Sbjct: 346 LGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMP 405

Query: 464 MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKR 523
           M+P+ +IWGSL+++C    N+D+ ++A DH+  L P   G YVLL+NIYA  G+W DV R
Sbjct: 406 MKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSR 465

Query: 524 VRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           +RK + ++ +KK PG S +E+N+ VQ
Sbjct: 466 LRKMIRNENMKKTPGGSLIEVNNIVQ 491

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1

 Score =  367 bits (942), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/548 (34%), Positives = 320/548 (58%), Gaps = 38/548 (6%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           ++D       LK++HA++++   L  +  +  KL+    + G +   R VFD++    + 
Sbjct: 27  LIDSATHKAQLKQIHARLLV-LGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIF 85

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
            +N +IR Y  N  + DAL +Y NM +    PD +T+P +LKACSG + L +G  +H  V
Sbjct: 86  PWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQV 145

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP--SKDVVTWNSMVAGYAQNGRFDE 214
            ++G D ++F  NGL+A+Y KC  L  AR V   +P   + +V+W ++V+ YAQNG   E
Sbjct: 146 FRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPME 205

Query: 215 ALDVCREMESLRIKPDADTMASLLPSVT--------------------NTSPENVLSVKE 254
           AL++  +M  + +KPD   + S+L + T                       P+ ++S+  
Sbjct: 206 ALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNT 265

Query: 255 M-------------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAIS 301
           M             F K+ + NL+ WN MI+ YA N    EA+D++ +M    + P+ IS
Sbjct: 266 MYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTIS 325

Query: 302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR 361
           + S + AC  + +L   R ++ YV R   + ++ + +AL+DM+AKCGS+  AR VFD+  
Sbjct: 326 ITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTL 385

Query: 362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY 421
            +DVV W++MI  YG+ G+  +A++L+  M   G+ P+ + F+ +L AC+H+G++ EG +
Sbjct: 386 DRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWW 445

Query: 422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLY 481
           +F  M + +K+ P+ +H+AC++DLLGRAG +++AY++IK MP++P   +WG+L++AC  +
Sbjct: 446 FFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKH 504

Query: 482 SNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS- 540
            ++++G  AA  +F + P+ +G+YV LSN+YA A  W  V  VR  M  KG+ K  G S 
Sbjct: 505 RHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSW 564

Query: 541 VEMNDQVQ 548
           VE+  +++
Sbjct: 565 VEVRGRLE 572

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1

 Score =  356 bits (914), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 200/547 (36%), Positives = 309/547 (56%), Gaps = 43/547 (7%)

Query: 38  LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF 97
           L K  ++  +K+LHAQII  ++LH +  I  KL+     C Q      VF+++   NV  
Sbjct: 26  LPKCANLNQVKQLHAQII-RRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHL 84

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
            N LIR++  N   Y A  V+  M   G   D +TYP +LKACSG + L V   +H  + 
Sbjct: 85  CNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIE 144

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCL---------------------------------KEA 184
           K+GL  +++  N L+  Y +CG L                                 ++A
Sbjct: 145 KLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDA 204

Query: 185 RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
           RR+ ++MP +D+++WN+M+ GYA+     +A ++  +M      P+ +T++     +  +
Sbjct: 205 RRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKM------PERNTVSWSTMVMGYS 258

Query: 245 SPENVLSVKEMFLK--LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISV 302
              ++   + MF K  L  KN+V+W ++IA YA   +  EA  L  QM   G++ +A +V
Sbjct: 259 KAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAV 318

Query: 303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC 362
            S+L AC +   L LG +IH  ++R  L  N  + NAL+DMYAKCG+L +A  VF+ +  
Sbjct: 319 ISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPK 378

Query: 363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY 422
           +D+VSW +M+   G+ G G +A+ LFS+M   G+ PD + F++VL +C+HAGL++EG  Y
Sbjct: 379 KDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDY 438

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS 482
           F  M + Y LVP++EH+ CLVDLLGR G+++EA  +++ MPMEPN  IWG+L+ AC +++
Sbjct: 439 FYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHN 498

Query: 483 NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGA-SV 541
            +DI     D++  L P   G Y LLSNIYA A  W  V  +R  M S G++K  GA SV
Sbjct: 499 EVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSV 558

Query: 542 EMNDQVQ 548
           E+ D + 
Sbjct: 559 ELEDGIH 565

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1

 Score =  355 bits (912), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 199/538 (36%), Positives = 303/538 (56%), Gaps = 36/538 (6%)

Query: 48  KKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN 107
           ++LH   I+        S+G  L+  Y    ++   R VFDE+T ++V+ +N +I  YV+
Sbjct: 215 EQLHG-FILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVS 273

Query: 108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN 167
           N L    L V+  M V G + D  T   V   C+ S  + +G  +H   VK         
Sbjct: 274 NGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRF 333

Query: 168 GNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
            N L+ MY KCG L  A+ V  +M  + VV++ SM+AGYA+ G   EA+ +  EME   I
Sbjct: 334 CNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGI 393

Query: 228 KPDADTMASLL------------PSVTNTSPENVL------------------SVKE--- 254
            PD  T+ ++L              V     EN L                  S++E   
Sbjct: 394 SPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAEL 453

Query: 255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY-LQMEVHGIEPNAISVASVLPACGDLS 313
           +F ++  K+++SWN +I  Y+ N    EA+ L+ L +E     P+  +VA VLPAC  LS
Sbjct: 454 VFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLS 513

Query: 314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMIS 373
           A   GR+IH Y+ R     +  + N+LVDMYAKCG+L  A  +FD +  +D+VSWT MI+
Sbjct: 514 AFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIA 573

Query: 374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV 433
            YGM G G +A+ALF++M  +G+  D I+FVS+L ACSH+GL++EG  +F IM  + K+ 
Sbjct: 574 GYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIE 633

Query: 434 PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH 493
           P +EH+AC+VD+L R G + +AY  I+ MP+ P+  IWG+L+  C ++ ++ +    A+ 
Sbjct: 634 PTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEK 693

Query: 494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII 550
           +F L P  +GYYVL++NIYA+A +W  VKR+RK +  +G++K PG S +E+  +V I 
Sbjct: 694 VFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIF 751

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1

 Score =  349 bits (896), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 191/572 (33%), Positives = 312/572 (54%), Gaps = 74/572 (12%)

Query: 48  KKLHAQIIINQHL-HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYV 106
           K+LHAQ I  Q L H++ SI   ++  Y     + +   +F  + +  V+ +  +IR + 
Sbjct: 25  KQLHAQFIRTQSLSHTSASI---VISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFT 81

Query: 107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLF 166
           +  L+  AL  +  M   G  PD   +P VLK+C+    L  G  +H  +V++G+D +L+
Sbjct: 82  DQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLY 141

Query: 167 NGNGLVAMYGKC-------------------------------GCL-----KEARRVLND 190
            GN L+ MY K                                 C+        RRV   
Sbjct: 142 TGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEV 201

Query: 191 MPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN------- 243
           MP KDVV++N+++AGYAQ+G +++AL + REM +  +KPD+ T++S+LP  +        
Sbjct: 202 MPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKG 261

Query: 244 --------------------------TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANN 277
                                          +   + +F +L  ++ +SWN ++A Y  N
Sbjct: 262 KEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQN 321

Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE 337
               EA+ L+ QM    ++P A++ +SV+PAC  L+ L LG+++H YV R     N+ + 
Sbjct: 322 GRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIA 381

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
           +ALVDMY+KCG++  AR +FD+M   D VSWT++I  + + G G++AV+LF +M   G+ 
Sbjct: 382 SALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVK 441

Query: 398 PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
           P+ +AFV+VL+ACSH GL++E   YF  MT+ Y L   +EH+A + DLLGRAGK+EEAY+
Sbjct: 442 PNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYN 501

Query: 458 LIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR 517
            I +M +EP   +W +L+++C ++ N+++    A+ IF +     G YVL+ N+YA  GR
Sbjct: 502 FISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGR 561

Query: 518 WGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           W ++ ++R  M  KG++K P  S +EM ++  
Sbjct: 562 WKEMAKLRLRMRKKGLRKKPACSWIEMKNKTH 593

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1

 Score =  344 bits (883), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 208/589 (35%), Positives = 308/589 (52%), Gaps = 86/589 (14%)

Query: 33  ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN 92
           AC +I      ++  +  HA  ++   + SN  +G  L+  Y  C  + D R VFDE++ 
Sbjct: 136 ACGEI----SSVRCGESAHALSLVTGFI-SNVFVGNALVAMYSRCRSLSDARKVFDEMSV 190

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH-GFDPDCYTYPCVLKACSGSNSLLVGLQ 151
            +VV +N +I SY        AL ++  M+   G  PD  T   VL  C+   +  +G Q
Sbjct: 191 WDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQ 250

Query: 152 IHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGR 211
           +HC  V   +  N+F GN LV MY KCG + EA  V ++M  KDVV+WN+MVAGY+Q GR
Sbjct: 251 LHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGR 310

Query: 212 FD-----------------------------------EALDVCREMESLRIKPDADTMAS 236
           F+                                   EAL VCR+M S  IKP+  T+ S
Sbjct: 311 FEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLIS 370

Query: 237 LLPSVTNTSP-------------------------ENVL---------------SVKEMF 256
           +L    +                            EN++               + + MF
Sbjct: 371 VLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMF 430

Query: 257 --LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM--EVHGIEPNAISVASVLPACGDL 312
             L    +++V+W VMI  Y+ +    +A++L  +M  E     PNA +++  L AC  L
Sbjct: 431 DSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASL 490

Query: 313 SALLLGRKIHRYVERKKLQP-NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM 371
           +AL +G++IH Y  R +     L + N L+DMYAKCGS+++AR VFD M  ++ V+WTS+
Sbjct: 491 AALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSL 550

Query: 372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK 431
           ++ YGM G G +A+ +F +M   G   D +  + VL ACSH+G++++G  YF  M   + 
Sbjct: 551 MTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFG 610

Query: 432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAA 491
           + P  EH+ACLVDLLGRAG++  A  LI++MPMEP   +W + ++ C ++  +++G  AA
Sbjct: 611 VSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAA 670

Query: 492 DHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           + I  LA N  G Y LLSN+YA AGRW DV R+R  M  KG+KK PG S
Sbjct: 671 EKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCS 719

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1

 Score =  342 bits (876), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 186/486 (38%), Positives = 275/486 (56%), Gaps = 44/486 (9%)

Query: 62  SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNM 121
           S+  IG  L+  Y  CG + D + VFDE+ ++NVV +N LI  +  N    +AL V++ M
Sbjct: 185 SDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMM 244

Query: 122 SVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-LDYNLFNGNGLVAMYGKCGC 180
                +PD  T   V+ AC+  +++ VG ++H  VVK   L  ++   N  V MY KC  
Sbjct: 245 LESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSR 304

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
           +KEAR + + MP ++V+   SM++GYA                       A T A+ L  
Sbjct: 305 IKEARFIFDSMPIRNVIAETSMISGYAMA---------------------ASTKAARL-- 341

Query: 241 VTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
                         MF K+  +N+VSWN +IA Y  N    EA+ L+  ++   + P   
Sbjct: 342 --------------MFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHY 387

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKL------QPNLRLENALVDMYAKCGSLTEAR 354
           S A++L AC DL+ L LG + H +V +         + ++ + N+L+DMY KCG + E  
Sbjct: 388 SFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGY 447

Query: 355 TVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG 414
            VF +M  +D VSW +MI  +  +G G +A+ LF +ML SG  PD I  + VLSAC HAG
Sbjct: 448 LVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAG 507

Query: 415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL 474
            +EEGR+YF  MT  + + P  +H+ C+VDLLGRAG +EEA  +I++MPM+P+  IWGSL
Sbjct: 508 FVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSL 567

Query: 475 VAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK 534
           +AAC ++ N+ +G   A+ +  + P+ SG YVLLSN+YA+ G+W DV  VRK M  +G+ 
Sbjct: 568 LAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVT 627

Query: 535 KMPGAS 540
           K PG S
Sbjct: 628 KQPGCS 633

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2

 Score =  339 bits (869), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 202/559 (36%), Positives = 314/559 (56%), Gaps = 42/559 (7%)

Query: 26  YTLLSG-DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTR 84
           YT++S   AC    D +   K  K++HA ++ +    S   +   L+  Y  CG+M    
Sbjct: 285 YTIVSALTAC----DGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAE 340

Query: 85  HVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN 144
            +  ++ N +VV +N LI+ YV N +Y +AL  + +M   G   D  +   ++ A    +
Sbjct: 341 RILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLS 400

Query: 145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVA 204
           +LL G+++H  V+K G D NL  GN L+ MY KC       R    M  KD+++W +++A
Sbjct: 401 NLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIA 460

Query: 205 GYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEM--------- 255
           GYAQN    EAL++ R++   R++ D   + S+L +  ++  +++L VKE+         
Sbjct: 461 GYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRA--SSVLKSMLIVKEIHCHILRKGL 518

Query: 256 -------------------------FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM 290
                                    F  +  K++VSW  MI+  A N   +EAV+L+ +M
Sbjct: 519 LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRM 578

Query: 291 EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL 350
              G+  +++++  +L A   LSAL  GR+IH Y+ RK       +  A+VDMYA CG L
Sbjct: 579 VETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDL 638

Query: 351 TEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC 410
             A+ VFD++  + ++ +TSMI+AYGM G G  AV LF KM    + PD I+F+++L AC
Sbjct: 639 QSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYAC 698

Query: 411 SHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERI 470
           SHAGLL+EGR + KIM  +Y+L P  EH+ CLVD+LGRA  V EA++ +K M  EP   +
Sbjct: 699 SHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEV 758

Query: 471 WGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS 530
           W +L+AAC  +S  +IG +AA  +  L P   G  VL+SN++A+ GRW DV++VR  M +
Sbjct: 759 WCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKA 818

Query: 531 KGIKKMPGAS-VEMNDQVQ 548
            G++K PG S +EM+ +V 
Sbjct: 819 SGMEKHPGCSWIEMDGKVH 837

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2 SV=1

 Score =  335 bits (860), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 187/546 (34%), Positives = 300/546 (54%), Gaps = 39/546 (7%)

Query: 43  DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLI 102
           D++   + H+ III + L  N  +G  L+  Y  CG + D R +F+ + +++ V +N +I
Sbjct: 443 DLEMGSQFHS-IIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTII 501

Query: 103 RSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD 162
            SYV +    +A  ++K M++ G   D       LKAC+  + L  G Q+HC  VK GLD
Sbjct: 502 GSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLD 561

Query: 163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREM 222
            +L  G+ L+ MY KCG +K+AR+V + +P   VV+ N+++AGY+QN   +EA+ + +EM
Sbjct: 562 RDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQN-NLEEAVVLFQEM 620

Query: 223 ESLRIKPDADTMASLLPSVTN-------------------TSPENVLSVK---------- 253
            +  + P   T A+++ +                      +S    L +           
Sbjct: 621 LTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRG 680

Query: 254 -----EMFLKLDN-KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP 307
                 +F +L + K++V W  M++ ++ N    EA+  Y +M   G+ P+  +  +VL 
Sbjct: 681 MTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLR 740

Query: 308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ-DVV 366
            C  LS+L  GR IH  +       +    N L+DMYAKCG +  +  VFD+MR + +VV
Sbjct: 741 VCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVV 800

Query: 367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM 426
           SW S+I+ Y  +G   DA+ +F  M  S + PD I F+ VL+ACSHAG + +GR  F++M
Sbjct: 801 SWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMM 860

Query: 427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDI 486
             QY +  R++H AC+VDLLGR G ++EA D I+   ++P+ R+W SL+ AC ++ +   
Sbjct: 861 IGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIR 920

Query: 487 GILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMND 545
           G ++A+ +  L P  S  YVLLSNIYA  G W     +RK M  +G+KK+PG S +++  
Sbjct: 921 GEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWIDVEQ 980

Query: 546 QVQIIA 551
           +  I A
Sbjct: 981 RTHIFA 986

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	571
224124386	677	predicted protein [Populus trichocarpa]	0.956	0.806	0.697	0.0
359490555	678	PREDICTED: putative pentatricopeptide re	0.959	0.808	0.699	0.0
147805129	1740	hypothetical protein VITISV_035038 [Viti	0.943	0.309	0.702	0.0
255545098	660	pentatricopeptide repeat-containing prot	0.940	0.813	0.650	0.0
449458017	678	PREDICTED: putative pentatricopeptide re	0.959	0.808	0.636	0.0
449520333	678	PREDICTED: putative pentatricopeptide re	0.959	0.808	0.636	0.0
356561464	673	PREDICTED: putative pentatricopeptide re	0.929	0.789	0.648	0.0
357516765	659	hypothetical protein MTR_8g063290 [Medic	0.893	0.773	0.666	0.0
297819536	1217	hypothetical protein ARALYDRAFT_485272 [	0.908	0.426	0.633	0.0
6522552	1229	putative protein [Arabidopsis thaliana]	0.908	0.422	0.625	0.0

>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa] gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]

 Score =  801 bits (2068), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/555 (69%), Positives = 459/555 (82%), Gaps = 9/555 (1%)

Query: 1   MKAVVLLCRHFSTTKPVQALVLSTQ-------YTLLSGDACNDILDKYPDIKTLKKLHAQ 53
           MK +  L R FST K  +   L+TQ       +T L+ D CN ILD  PD KTLKKLH++
Sbjct: 1   MKTISSLSRQFSTAKQTKPFSLTTQKPQLSPKFTALTEDLCNKILDVNPDAKTLKKLHSK 60

Query: 54  IIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYD 113
           I+I+Q+LH NPS+G+KLMR Y ACG+   TRH+FDEIT+KNVVFFNV+IRSYVNN LY D
Sbjct: 61  ILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQD 120

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           AL V+K M+  GF PD YTYPCVLKACS S +L VGLQIH +VVK+GLD NL+ GNGLV+
Sbjct: 121 ALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVS 180

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
           MYGKC  L  ARRVL++MP +D+V+WNSMVAGYAQNGRF++AL +CREME L++KPDA T
Sbjct: 181 MYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGT 240

Query: 234 MASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH 293
           M SLLP+VTNTS +NVL VK+MF+KL  K+L+SWNVMIAVY NN+MP EAVDLYLQM+VH
Sbjct: 241 MGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVH 300

Query: 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353
           G+EP+A+S++SVLPACGDLSA +LGR+IH YVERKKL+PNL LENAL+DMYAKCG L EA
Sbjct: 301 GVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEA 360

Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA 413
           R VFDQM  +DVVSWTSMISAYGMSGQG DAVALF KM  SG  PD IAFVSVL+ACSHA
Sbjct: 361 RAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHA 420

Query: 414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS 473
           GL++EGRY F +M E Y + P IEH+ C+VDLLGRAGK++EAY L +QMPMEPNER+WGS
Sbjct: 421 GLVDEGRYCFNLMAE-YGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGS 479

Query: 474 LVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
           L++AC +YS+M+I +LAADH+F LAP QSGYYVLLSNIYAKAGRW DV+ VR  MNSKGI
Sbjct: 480 LLSACRVYSSMNIALLAADHLFQLAPEQSGYYVLLSNIYAKAGRWQDVETVRSIMNSKGI 539

Query: 534 KKMPGAS-VEMNDQV 547
           KK+PG S VE+ND V
Sbjct: 540 KKIPGNSNVEINDHV 554

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142-like [Vitis vinifera]

 Score =  800 bits (2066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/556 (69%), Positives = 459/556 (82%), Gaps = 8/556 (1%)

Query: 1   MKAVVLLCRHFSTTKPVQALVLSTQY-------TLLSGDACNDILDKYPDIKTLKKLHAQ 53
           M A+  L RHF   K +Q LVLS Q         +L+ + C  ILDK PDIK LKKLH++
Sbjct: 1   MTAINPLYRHFPAVKQLQTLVLSIQKPKFTQQNVVLTENLCGQILDKNPDIKYLKKLHSK 60

Query: 54  IIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYD 113
           I I+  LHSNPS+G+KLMR Y  CG+   TRH+FDEI  KNVVFFNV+IRSYVNN+LY D
Sbjct: 61  ICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSD 120

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           AL V+KNM+ HG DPD YTYPCVLKA SGS  L VG+QIH +VV+VGLD N+F GNGL++
Sbjct: 121 ALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLIS 180

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
           MYGKCGCL EA RVL+ MP +DVV+WNS+VAG A+NG+FD+AL+VC+EME L +KPDA T
Sbjct: 181 MYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGT 240

Query: 234 MASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH 293
           MASLLP+VTNT  +NV  VKEMF+KL NK+LVSWNVMIAVY NNSMPAEAVD++LQME H
Sbjct: 241 MASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDH 300

Query: 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353
            ++P+AIS+ASVLPACGDLSALLLGR+IH YV RK+LQPNL LENAL+DMYAKCG L  A
Sbjct: 301 AVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYA 360

Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA 413
           R VFDQM+ +DVVSWTSMISAYGM+G+G DAV+LFS+M   GL PDSIAFVSVLSACSHA
Sbjct: 361 REVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHA 420

Query: 414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS 473
           GLL+EGRYYFK+MTE+ K+VPRIEHF C+VDLLGRAG+V+EAY  IKQMPMEPNER+WG+
Sbjct: 421 GLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGA 480

Query: 474 LVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
           L++AC +YSNM IG+LAAD +F L P QSGYYVLLSNIYAKAGRW DV  VR  M +KGI
Sbjct: 481 LLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGI 540

Query: 534 KKMPGAS-VEMNDQVQ 548
           KKMPG S  E++++V 
Sbjct: 541 KKMPGVSNFELDNRVH 556

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]

 Score =  796 bits (2055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/547 (70%), Positives = 454/547 (82%), Gaps = 8/547 (1%)

Query: 12   STTKPVQALVLS-------TQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNP 64
            S  K +Q LVLS        Q  +L+ + C  ILDK PDIK LKKLH++I I+  LHSNP
Sbjct: 1001 SAVKQLQTLVLSIQKPKFTQQXVVLTENLCGQILDKNPDIKYLKKLHSKICIDHDLHSNP 1060

Query: 65   SIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH 124
            S+G+KLMR Y  CG+   TRH+FDEI  KNVVFFNV+IRSYVNN+LY DAL V+KNM+ H
Sbjct: 1061 SLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGH 1120

Query: 125  GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEA 184
            G DPD YTYPCVLKA SGS  L VG+QIH +VV+VGLD N+F GNGL++MYGKCGCL EA
Sbjct: 1121 GIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEA 1180

Query: 185  RRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT 244
             RVL++MP +DVV+WNS+VAG A+NG+FD+AL+VC+EME L +KPDA TMASLLP+VTNT
Sbjct: 1181 CRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNT 1240

Query: 245  SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS 304
              +NV  VKEMF+KL NK+LVSWNVMIAVY NNSMPAEAVD++LQME H ++P+AIS+AS
Sbjct: 1241 CLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIAS 1300

Query: 305  VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD 364
            VLPACGDLSALLLGR+IH YV RK+LQPNL LENAL+DMYAKCG L  AR VFDQM+ +D
Sbjct: 1301 VLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRD 1360

Query: 365  VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424
            VVSWTSMISAYGM+G+G DAV+LFS+M   GL PDSIAFVSVLSACSHAGLL+EGRYYFK
Sbjct: 1361 VVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFK 1420

Query: 425  IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNM 484
            +MTE+ K+VPRIEHF C+VDLLGRAG+V+EAY  IKQMPMEPNER+WG+L++AC +YSNM
Sbjct: 1421 LMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNM 1480

Query: 485  DIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEM 543
             IG+LAAD +F L P QSGYYVLLSNIYAKAGRW DV  VR  M +KGIKKMPG S  E+
Sbjct: 1481 IIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFEL 1540

Query: 544  NDQVQII 550
            +++V   
Sbjct: 1541 DNRVHTF 1547

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/549 (65%), Positives = 444/549 (80%), Gaps = 12/549 (2%)

Query: 1   MKAVVLLCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHL 60
           MKA+  L R+F+T + +            + D CN ILD+YPDI TLKKLH +++ +Q+L
Sbjct: 1   MKAIASLSRYFATARQLS----------FTEDLCNRILDQYPDINTLKKLHGKVLNDQYL 50

Query: 61  HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKN 120
             NPS+G+KLMR Y ACG+    RH+FDEIT+KNVVFFNV+IRSYVNN+LY DAL VYK 
Sbjct: 51  RWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKT 110

Query: 121 MSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC 180
           M   GF PD YTYPCVLKA S S+SL VGLQIH +V+K+GLD NL+ GNGL+AMYGKC  
Sbjct: 111 MYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKS 170

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
           LKEA++VL+++P +DVV+WNSMV+ YAQNGRF++AL++CREME+L +KP+  TMASLLP+
Sbjct: 171 LKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPA 230

Query: 241 VTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
           VTNT+ +NVL VKEMFLKL  K+++SWNVMIA+Y NNSMP EAV LY QME +G+EP+ +
Sbjct: 231 VTNTTSDNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVV 290

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM 360
           S+ SVLPA GDLSAL LGR++H++ ERKKL PNL LENAL+DMYAKCG L +AR VF+QM
Sbjct: 291 SIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQM 350

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
           + +DVVSWTS+ISAYG  GQG DAVA+F++M  SGL PDSIAFVSVL+ACSHAGLL++GR
Sbjct: 351 QFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGR 410

Query: 421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL 480
           YYF +M E   + P++EHFAC+VDLLGRAGK++EAY  I+QMP+EP+ER+WG L++AC +
Sbjct: 411 YYFNLMAE-CGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRV 469

Query: 481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
           YSNM+IGILAAD +  L P  SGYYVLLSNIYAKAGRW DV  +R  M  KGIKK+PG S
Sbjct: 470 YSNMNIGILAADKLLMLNPEHSGYYVLLSNIYAKAGRWADVAAIRSIMERKGIKKLPGIS 529

Query: 541 -VEMNDQVQ 548
            VE+ND V 
Sbjct: 530 NVELNDGVH 538

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142-like [Cucumis sativus]

 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/556 (63%), Positives = 442/556 (79%), Gaps = 8/556 (1%)

Query: 1   MKAVVLLCRHFSTTKPVQALVLST-------QYTLLSGDACNDILDKYPDIKTLKKLHAQ 53
           MKA++   R    +   + +V ST       +  + S +AC  ILD+YP IKTL KLH++
Sbjct: 1   MKAIIFCTRQILNSNKFRGIVSSTRIRFDRLKVEVFSKEACEVILDQYPGIKTLNKLHSK 60

Query: 54  IIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYD 113
           I+IN+HL  +P++ +KLMR Y A G+    R++FD    KNVVFFNV+IRSYVNN LY +
Sbjct: 61  IVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVE 120

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           AL +++ M    F+PD YT+PCVLKACSG ++L VGLQ+H ++VKVGLD NLF GN LVA
Sbjct: 121 ALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVA 180

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
           MYGKCGCL+EAR+VL+ MP +DVV+WNSMVAGYAQ+G+FD+AL++C+EM+SL +  DA T
Sbjct: 181 MYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGT 240

Query: 234 MASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH 293
           MASL P V  TS ENV  +  MF ++  KNL+SWNVMIA+Y NNSMP EAV L+LQME  
Sbjct: 241 MASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEEC 300

Query: 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353
           G++P+A+++AS+LPACGDLSAL LGR++H+Y+E+  L+PNL LENAL+DMYAKCG L EA
Sbjct: 301 GMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEA 360

Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA 413
           R VFD+MR +DVVSWTSM+SAYG SGQGYDAVALF+KML SG  PDSIAFVSVLSACSH 
Sbjct: 361 RDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHT 420

Query: 414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS 473
           GLL++GR+YF++MTEQY +VPRIEHFAC+VDL GRAG+VEEAY  IKQMPMEPNER+WG+
Sbjct: 421 GLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGA 480

Query: 474 LVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
           L++AC ++S MDIG++AAD +F LAP QSGYYVLLSNIYAKAG W DV  VR  M   GI
Sbjct: 481 LLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGI 540

Query: 534 KKMPGAS-VEMNDQVQ 548
           KK+PG S VE+N QV 
Sbjct: 541 KKVPGISNVELNGQVH 556

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142-like [Cucumis sativus]

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/556 (63%), Positives = 440/556 (79%), Gaps = 8/556 (1%)

Query: 1   MKAVVLLCRHFSTTKPVQALVLST-------QYTLLSGDACNDILDKYPDIKTLKKLHAQ 53
           MKA++   R    +   +  V  T       +  + S +AC  ILD+YP IKTL KLH++
Sbjct: 1   MKAIIFCTRQILNSNKFRGFVSLTRIRFDRLKVEVFSKEACEVILDQYPGIKTLNKLHSK 60

Query: 54  IIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYD 113
           I+IN+HL  +P++ +KLMR Y A G+    R++FD    KNVVFFNV+IRSYVNN LY +
Sbjct: 61  IVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVE 120

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           AL +++ M    F+PD YT+PCVLKACSG ++L VGLQ+H ++VKVGLD NLF GN LVA
Sbjct: 121 ALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVA 180

Query: 174 MYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADT 233
           MYGKCGCL+EAR+VL+ MP +DVV+WNSMVAGYAQ+G+FD+AL++C+EM+SL +  DA T
Sbjct: 181 MYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGT 240

Query: 234 MASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH 293
           MASL P V  TS ENV  +  MF ++  KNL+SWNVMIA+Y NNSMP EAV L+LQME  
Sbjct: 241 MASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEEC 300

Query: 294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA 353
           G++P+A+++AS+LPACGDLSAL LGR++H+Y+E+  LQPNL LENAL+DMYAKCG L EA
Sbjct: 301 GMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEA 360

Query: 354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA 413
           R VFD+MR +DVVSWTSM+SAYG SGQGYDAVALF+KML SG  PDSIAFVSVLSACSH 
Sbjct: 361 RDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHT 420

Query: 414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS 473
           GLL++GR+YF++MTEQY +VPRIEHFAC+VDL GRAG+VEEAY  IKQMPMEPNER+WG+
Sbjct: 421 GLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGA 480

Query: 474 LVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI 533
           L++AC ++S MDIG++AAD +F LAP QSGYYVLLSNIYAKAG W DV  VR  M   GI
Sbjct: 481 LLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGI 540

Query: 534 KKMPGAS-VEMNDQVQ 548
           KK+PG S VE+N QV 
Sbjct: 541 KKVPGISNVELNGQVH 556

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142-like [Glycine max]

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/540 (64%), Positives = 442/540 (81%), Gaps = 9/540 (1%)

Query: 17  VQALVLSTQYTLLSG-------DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLK 69
           +QALV S + +L+S        +    +LD+YPDIKTLK +H+++  N   H NPS+G+K
Sbjct: 14  LQALVSSIRKSLVSPQNPVLVLELLGKVLDQYPDIKTLKNVHSKVF-NLSFHENPSLGIK 72

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           LMR Y A G+    R+VFD I  +NV+F+NV+IRSY+NN+LY DAL V+++M   GF PD
Sbjct: 73  LMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPD 132

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            YTYPCVLKACS S++L +GLQ+H +V KVGLD NLF GNGL+A+YGKCGCL EAR VL+
Sbjct: 133 HYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLD 192

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
           +M SKDVV+WNSMVAGYAQN +FD+ALD+CREM+ +R KPDA TMASLLP+VTNTS ENV
Sbjct: 193 EMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENV 252

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
           L V+EMF+ L+ K+LVSWNVMI+VY  NSMP ++VDLYLQM    +EP+AI+ ASVL AC
Sbjct: 253 LYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRAC 312

Query: 310 GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT 369
           GDLSALLLGR+IH YVERKKL PN+ LEN+L+DMYA+CG L +A+ VFD+M+ +DV SWT
Sbjct: 313 GDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWT 372

Query: 370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ 429
           S+ISAYGM+GQGY+AVALF++M  SG  PDSIAFV++LSACSH+GLL EG++YFK MT+ 
Sbjct: 373 SLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDD 432

Query: 430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
           YK+ P IEHFACLVDLLGR+G+V+EAY++IKQMPM+PNER+WG+L+++C +YSNMDIGIL
Sbjct: 433 YKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGIL 492

Query: 490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           AAD +  LAP +SGYYVLLSNIYAKAGRW +V  +R  M  + I+KMPG S VE+N+QV 
Sbjct: 493 AADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVH 552

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula] gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/512 (66%), Positives = 423/512 (82%), Gaps = 2/512 (0%)

Query: 38  LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF 97
           LD+ PDIKTLKKLH  +I   + H NPS+G+KLMR+Y ACG+   TR VFDE++++NVVF
Sbjct: 28  LDQNPDIKTLKKLHT-MIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVF 86

Query: 98  FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV 157
           +NV+IRSYVNN+ Y D L V++ M   GF PD YTYPCVLKACS S +L  GL IH  V+
Sbjct: 87  YNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVL 146

Query: 158 KVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD 217
           KVGLD+NLF GNGL+AMYGKCGCL EARRV ++M  KDVV+WNSMVAGYA N RFD+AL+
Sbjct: 147 KVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALE 206

Query: 218 VCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANN 277
           +CREME    KPD  TMASL+P+V NTS ENVL V+++F+ L+ KNL+SWNVMI VY  N
Sbjct: 207 ICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYMKN 266

Query: 278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE 337
           S+P +AVDLYLQME   +EP+AI+ ASVLPACGDLSALLLGR+IH YVE+KKL PNL LE
Sbjct: 267 SLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLE 326

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC 397
           N+L+DMYA+CG L +A+ VFD+M+ +DV SWTS+ISAYGM+GQG +AVALF++ML SG  
Sbjct: 327 NSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQA 386

Query: 398 PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD 457
           PDSIAFV++LSACSH+GLL+EGR YFK MT+ Y++ PRIEH+ACLVDLLGRAG+V+EAY+
Sbjct: 387 PDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYN 446

Query: 458 LIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR 517
           +IKQMP+EPNER+W +L+++C +++NMDIGILAAD++  LAP QSGYYVLLSNIYAKAGR
Sbjct: 447 IIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNIYAKAGR 506

Query: 518 WGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQ 548
           W +V  +R  M  K I+K PG S VE+N+QV 
Sbjct: 507 WKEVTEIRSVMKRKKIRKTPGISNVELNNQVH 538

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp. lyrata] gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp. lyrata]

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/521 (63%), Positives = 407/521 (78%), Gaps = 2/521 (0%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           +LD YPD+KTL+ +H++II ++ L  N S+G+KLMR Y +   +   R VFDEI  +NV+
Sbjct: 49  VLDTYPDLKTLRTVHSRII-SEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVI 107

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
             NV+IRSYVNN  Y + + V+  M      PD YT+PCVLKACS S ++++G +IH S 
Sbjct: 108 IINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSA 167

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
            KVGL   LF GNGLV+MYGKCG L EAR VL++M  +DVV+WNS+VAGYAQN RFD+AL
Sbjct: 168 TKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDAL 227

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
           +VCREMES++I  DA TMASLLP+V+NT+ ENV+ VK+MF K+  K+LVSWNVMI VY  
Sbjct: 228 EVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMK 287

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N+MP EAV+LY  ME  G EP+A+S+ SVLPACGD SAL LG+KIH Y+ERKKL PNL L
Sbjct: 288 NAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLL 347

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
           ENAL+DMYAKCG L  AR VF+ M+ +DVVSWT+MISAYG SG+G DAVALFSKM  SGL
Sbjct: 348 ENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGL 407

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            PDSIAFV+ L+ACSHAGLLEEGR  FK+MT+ YK+ PR+EH AC+VDLLGRAGKV+EAY
Sbjct: 408 VPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAY 467

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
             I++MPMEPNER+WG+L+ AC ++SN DIG+LAAD +F LAP QSGYYVLLSNIYAKAG
Sbjct: 468 KFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAG 527

Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
           RW +V  +R  M SKG+KK PGAS VE+N  +    +  RS
Sbjct: 528 RWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRS 568

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/521 (62%), Positives = 406/521 (77%), Gaps = 2/521 (0%)

Query: 37  ILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVV 96
           +LD YPDI+TL+ +H++II+ + L  N S+G+KLMR Y +   +   R VFDEI  +NV+
Sbjct: 48  VLDTYPDIRTLRTVHSRIIL-EDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVI 106

Query: 97  FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSV 156
             NV+IRSYVNN  Y + + V+  M      PD YT+PCVLKACS S ++++G +IH S 
Sbjct: 107 IINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSA 166

Query: 157 VKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEAL 216
            KVGL   LF GNGLV+MYGKCG L EAR VL++M  +DVV+WNS+V GYAQN RFD+AL
Sbjct: 167 TKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDAL 226

Query: 217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN 276
           +VCREMES++I  DA TMASLLP+V+NT+ ENV+ VK+MF K+  K+LVSWNVMI VY  
Sbjct: 227 EVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMK 286

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N+MP EAV+LY +ME  G EP+A+S+ SVLPACGD SAL LG+KIH Y+ERKKL PNL L
Sbjct: 287 NAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLL 346

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
           ENAL+DMYAKCG L +AR VF+ M+ +DVVSWT+MISAYG SG+G DAVALFSK+  SGL
Sbjct: 347 ENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGL 406

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            PDSIAFV+ L+ACSHAGLLEEGR  FK+MT+ YK+ PR+EH AC+VDLLGRAGKV+EAY
Sbjct: 407 VPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAY 466

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
             I+ M MEPNER+WG+L+ AC ++S+ DIG+LAAD +F LAP QSGYYVLLSNIYAKAG
Sbjct: 467 RFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAG 526

Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRS 556
           RW +V  +R  M SKG+KK PGAS VE+N  +    +  RS
Sbjct: 527 RWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRS 567

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	571
TAIR|locus:2141171	857	AT4G21300 [Arabidopsis thalian	0.586	0.390	0.377	7e-92
TAIR|locus:505006130	970	AT1G18485 [Arabidopsis thalian	0.520	0.306	0.381	7.2e-90
TAIR|locus:2103483	890	OTP84 "ORGANELLE TRANSCRIPT PR	0.513	0.329	0.401	3.5e-88
TAIR|locus:2148393	534	AT5G59600 "AT5G59600" [Arabido	0.856	0.915	0.366	6.9e-86
TAIR|locus:2131939	792	MEF29 "AT4G30700" [Arabidopsis	0.544	0.392	0.366	4.5e-84
TAIR|locus:2161018	530	AT5G56310 "AT5G56310" [Arabido	0.500	0.539	0.397	5.7e-84
TAIR|locus:2089333	654	AT3G16610 "AT3G16610" [Arabido	0.497	0.434	0.388	5.8e-82
TAIR|locus:2150996	548	AT5G15300 "AT5G15300" [Arabido	0.889	0.927	0.332	2.9e-80
TAIR|locus:2159582	849	SLG1 "AT5G08490" [Arabidopsis	0.597	0.401	0.330	4.6e-80
TAIR|locus:1009023396	612	AT5G40405 "AT5G40405" [Arabido	0.595	0.555	0.371	7.4e-80

TAIR|locus:2141171 AT4G21300 [Arabidopsis thaliana (taxid:3702)]

 Score = 656 (236.0 bits), Expect = 7.0e-92, Sum P(2) = 7.0e-92
 Identities = 128/339 (37%), Positives = 213/339 (62%)

Query:   215 ALDVCREMESLRIKPDADTMASLLPSVTNTSPE--NVLSVKEMFLKLDNKNLVSWNVMIA 272
             AL + RE+    IK   D   ++  +V +   +   +    E+F +L  +++VSWN MI 
Sbjct:   456 ALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMIT 515

Query:   273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP 332
               A +  P+ A+D++ QM V GI  + +S+++ L AC +L +   G+ IH ++ +  L  
Sbjct:   516 RCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLAS 575

Query:   333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML 392
             ++  E+ L+DMYAKCG+L  A  VF  M+ +++VSW S+I+A G  G+  D++ LF +M+
Sbjct:   576 DVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMV 635

Query:   393 -MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK 451
               SG+ PD I F+ ++S+C H G ++EG  +F+ MTE Y + P+ EH+AC+VDL GRAG+
Sbjct:   636 EKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGR 695

Query:   452 VEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI 511
             + EAY+ +K MP  P+  +WG+L+ AC L+ N+++  +A+  +  L P+ SGYYVL+SN 
Sbjct:   696 LTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNA 755

Query:   512 YAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQI 549
             +A A  W  V +VR  M  + ++K+PG S +E+N +  +
Sbjct:   756 HANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHL 794

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)]

 Score = 594 (214.2 bits), Expect = 7.2e-90, Sum P(2) = 7.2e-90
 Identities = 114/299 (38%), Positives = 192/299 (64%)

Query:   251 SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
             +V+ +F  +++K+LVSWN +I  Y  N  P  A+ ++ QM ++GI+   IS+  V  AC 
Sbjct:   549 TVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACS 608

Query:   311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS 370
              L +L LGR+ H Y  +  L+ +  +  +L+DMYAK GS+T++  VF+ ++ +   SW +
Sbjct:   609 LLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNA 668

Query:   371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY 430
             MI  YG+ G   +A+ LF +M  +G  PD + F+ VL+AC+H+GL+ EG  Y   M   +
Sbjct:   669 MIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSF 728

Query:   431 KLVPRIEHFACLVDLLGRAGKVEEAYDLI-KQMPMEPNERIWGSLVAACCLYSNMDIGIL 489
              L P ++H+AC++D+LGRAG++++A  ++ ++M  E +  IW SL+++C ++ N+++G  
Sbjct:   729 GLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEK 788

Query:   490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
              A  +F L P +   YVLLSN+YA  G+W DV++VR+ MN   ++K  G S +E+N +V
Sbjct:   789 VAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKV 847

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)]

 Score = 634 (228.2 bits), Expect = 3.5e-88, Sum P(2) = 3.5e-88
 Identities = 123/306 (40%), Positives = 200/306 (65%)

Query:   255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY-----LQMEVH------GIEPNAISVA 303
             +F K+++++LV+WN MI  Y  +    +A+ L      L+ +V        ++PN+I++ 
Sbjct:   462 IFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLM 521

Query:   304 SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ 363
             ++LP+C  LSAL  G++IH Y  +  L  ++ + +ALVDMYAKCG L  +R VFDQ+  +
Sbjct:   522 TILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK 581

Query:   364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF 423
             +V++W  +I AYGM G G +A+ L   M++ G+ P+ + F+SV +ACSH+G+++EG   F
Sbjct:   582 NVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIF 641

Query:   424 KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNER-IWGSLVAACCLYS 482
              +M   Y + P  +H+AC+VDLLGRAG+++EAY L+  MP + N+   W SL+ A  +++
Sbjct:   642 YVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHN 701

Query:   483 NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-V 541
             N++IG +AA ++  L PN + +YVLL+NIY+ AG W     VR+ M  +G++K PG S +
Sbjct:   702 NLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWI 761

Query:   542 EMNDQV 547
             E  D+V
Sbjct:   762 EHGDEV 767

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031425 "chloroplast RNA processing" evidence=IMP

TAIR|locus:2148393 AT5G59600 "AT5G59600" [Arabidopsis thaliana (taxid:3702)]

 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 181/494 (36%), Positives = 295/494 (59%)

Query:    50 LHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNY 109
             LHA ++ +  +     I  KL+  Y  CG+++D R VFDE+  +++    V+I +   N 
Sbjct:    38 LHAHLVTSG-IARLTRIAAKLVTFYVECGKVLDARKVFDEMPKRDISGCVVMIGACARNG 96

Query:   110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
              Y ++L  ++ M   G   D +  P +LKA         G  IHC V+K   + + F  +
Sbjct:    97 YYQESLDFFREMYKDGLKLDAFIVPSLLKASRNLLDREFGKMIHCLVLKFSYESDAFIVS 156

Query:   170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
              L+ MY K G +  AR+V +D+  +D+V +N+M++GYA N + DEAL++ ++M+ L IKP
Sbjct:   157 SLIDMYSKFGEVGNARKVFSDLGEQDLVVFNAMISGYANNSQADEALNLVKDMKLLGIKP 216

Query:   230 DADTMASLLPSVTNT-SPENVLSVKEMFLKLDN--KNLVSWNVMIAVYANNSMPAEAVDL 286
             D  T  +L+   ++  + E V  + E+   LD    ++VSW  +I+   +N    +A D 
Sbjct:   217 DVITWNALISGFSHMRNEEKVSEILELMC-LDGYKPDVVSWTSIISGLVHNFQNEKAFDA 275

Query:   287 YLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK 346
             + QM  HG+ PN+ ++ ++LPAC  L+ +  G++IH Y     L+ +  + +AL+DMY K
Sbjct:   276 FKQMLTHGLYPNSATIITLLPACTTLAYMKHGKEIHGYSVVTGLEDHGFVRSALLDMYGK 335

Query:   347 CGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV 406
             CG ++EA  +F +   +  V++ SMI  Y   G    AV LF +M  +G   D + F ++
Sbjct:   336 CGFISEAMILFRKTPKKTTVTFNSMIFCYANHGLADKAVELFDQMEATGEKLDHLTFTAI 395

Query:   407 LSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEP 466
             L+ACSHAGL + G+  F +M  +Y++VPR+EH+AC+VDLLGRAGK+ EAY++IK M MEP
Sbjct:   396 LTACSHAGLTDLGQNLFLLMQNKYRIVPRLEHYACMVDLLGRAGKLVEAYEMIKAMRMEP 455

Query:   467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRK 526
             +  +WG+L+AAC  + NM++  +AA H+  L P  SG  +LL+++YA AG W  V R++K
Sbjct:   456 DLFVWGALLAACRNHGNMELARIAAKHLAELEPENSGNGLLLTSLYANAGSWESVVRMKK 515

Query:   527 FMNSKGIKKMPGAS 540
              +  K  ++  G+S
Sbjct:   516 MIKKKRFRRFLGSS 529

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)]

 Score = 601 (216.6 bits), Expect = 4.5e-84, Sum P(2) = 4.5e-84
 Identities = 115/314 (36%), Positives = 191/314 (60%)

Query:   235 ASLLPSVTNT-SPENVL-SVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV 292
             AS+  ++T   S  N + S +++F +   K+L SWN MI+ Y  N +  +A+ L+ +M+ 
Sbjct:   354 ASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQK 413

Query:   293 HGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352
                 PN +++  +L AC  L AL LG+ +H  V     + ++ +  AL+ MYAKCGS+ E
Sbjct:   414 SEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAE 473

Query:   353 ARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412
             AR +FD M  ++ V+W +MIS YG+ GQG +A+ +F +ML SG+ P  + F+ VL ACSH
Sbjct:   474 ARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSH 533

Query:   413 AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWG 472
             AGL++EG   F  M  +Y   P ++H+AC+VD+LGRAG ++ A   I+ M +EP   +W 
Sbjct:   534 AGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWE 593

Query:   473 SLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG 532
             +L+ AC ++ + ++    ++ +F L P+  GY+VLLSNI++    +     VR+    + 
Sbjct:   594 TLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRK 653

Query:   533 IKKMPGAS-VEMND 545
             + K PG + +E+ +
Sbjct:   654 LAKAPGYTLIEIGE 667

GO:0003674 "molecular_function" evidence=ND

GO:0000963 "mitochondrial RNA processing" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016554 "cytidine to uridine editing" evidence=IMP

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

TAIR|locus:2161018 AT5G56310 "AT5G56310" [Arabidopsis thaliana (taxid:3702)]

 Score = 640 (230.4 bits), Expect = 5.7e-84, Sum P(2) = 5.7e-84
 Identities = 114/287 (39%), Positives = 196/287 (68%)

Query:   262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
             +N VSW  +I+ YA +   +EA++++ +M +  +EP+ +++ +VL AC DL +L LG +I
Sbjct:   213 RNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERI 272

Query:   322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
               YV+ + +   + L NA++DMYAK G++T+A  VF+ +  ++VV+WT++I+     G G
Sbjct:   273 CSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHG 332

Query:   382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC 441
              +A+A+F++M+ +G+ P+ + F+++LSACSH G ++ G+  F  M  +Y + P IEH+ C
Sbjct:   333 AEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGC 392

Query:   442 LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ 501
             ++DLLGRAGK+ EA ++IK MP + N  IWGSL+AA  ++ ++++G  A   +  L PN 
Sbjct:   393 MIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPNN 452

Query:   502 SGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG-ASVEMNDQV 547
             SG Y+LL+N+Y+  GRW + + +R  M   G+KKM G +S+E+ ++V
Sbjct:   453 SGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIEVENRV 499

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2089333 AT3G16610 "AT3G16610" [Arabidopsis thaliana (taxid:3702)]

 Score = 569 (205.4 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
 Identities = 111/286 (38%), Positives = 172/286 (60%)

Query:   256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL 315
             F ++  K+++S+N +I     N  P E+  L+ +M   GI P+  ++  VL AC  L+AL
Sbjct:   366 FSEIGLKDVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAAL 425

Query:   316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY 375
               G   H Y        N  + NAL+DMY KCG L  A+ VFD M  +D+VSW +M+  +
Sbjct:   426 GHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGF 485

Query:   376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE-QYKLVP 434
             G+ G G +A++LF+ M  +G+ PD +  +++LSACSH+GL++EG+  F  M+   + ++P
Sbjct:   486 GIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIP 545

Query:   435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI 494
             RI+H+ C+ DLL RAG ++EAYD + +MP EP+ R+ G+L++AC  Y N ++G   +  +
Sbjct:   546 RIDHYNCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSACWTYKNAELGNEVSKKM 605

Query:   495 FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS 540
               L        VLLSN Y+ A RW D  R+R     +G+ K PG S
Sbjct:   606 QSLGETTESL-VLLSNTYSAAERWEDAARIRMIQKKRGLLKTPGYS 650

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006302 "double-strand break repair" evidence=RCA

GO:0006312 "mitotic recombination" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

TAIR|locus:2150996 AT5G15300 "AT5G15300" [Arabidopsis thaliana (taxid:3702)]

 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 174/523 (33%), Positives = 291/523 (55%)

Query:    43 DIKTLKKLHAQIIINQHLHSNPSIGLKLM--RTYGACGQMVDTRHVFDEITNKNVVFFNV 100
             +I+TLK++HA +++N  L SN S+  +L+   +    G +     +FDEI   +V   N 
Sbjct:    24 NIRTLKQIHASMVVNG-LMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNH 82

Query:   101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG 160
             ++R    +      + +Y  M   G  PD YT+  VLKACS       G   H  VV+ G
Sbjct:    83 VLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHG 142

Query:   161 LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR 220
                N +  N L+  +  CG L  A  + +D      V W+SM +GYA+ G+ DEA+ +  
Sbjct:   143 FVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFD 202

Query:   221 EMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP 280
             EM      P  D +A  +        + + S +E+F +   K++V+WN MI+ Y N   P
Sbjct:   203 EM------PYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYP 256

Query:   281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV-ERKKLQPNLRLE-- 337
              EA+ ++ +M   G  P+ +++ S+L AC  L  L  G+++H Y+ E   +  ++ +   
Sbjct:   257 KEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTP 316

Query:   338 --NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG 395
               NAL+DMYAKCGS+  A  VF  ++ +D+ +W ++I    +      ++ +F +M    
Sbjct:   317 IWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLK 375

Query:   396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA 455
             + P+ + F+ V+ ACSH+G ++EGR YF +M + Y + P I+H+ C+VD+LGRAG++EEA
Sbjct:   376 VWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEA 435

Query:   456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA 515
             +  ++ M +EPN  +W +L+ AC +Y N+++G  A + +  +  ++SG YVLLSNIYA  
Sbjct:   436 FMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYAST 495

Query:   516 GRWGDVKRVRKFMNSKGIKKMPGASVEMNDQVQIIALPLRSSK 558
             G+W  V++VRK  +   +KK  G S+   D  +++   L SS+
Sbjct:   496 GQWDGVQKVRKMFDDTRVKKPTGVSLIEEDDDKLMMRYLLSSE 538

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2159582 SLG1 "AT5G08490" [Arabidopsis thaliana (taxid:3702)]

 Score = 606 (218.4 bits), Expect = 4.6e-80, Sum P(2) = 4.6e-80
 Identities = 115/348 (33%), Positives = 208/348 (59%)

Query:   200 NSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKL 259
             N+++  YA+ G  + A  +   +   R     +   SLL    N+   +    + +F ++
Sbjct:   474 NALLDAYAKCGNVEYAHKIFLGLSERRTLVSYN---SLLSGYVNSGSHD--DAQMLFTEM 528

Query:   260 DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
                +L +W++M+ +YA +  P EA+ ++ +++  G+ PN +++ ++LP C  L++L L R
Sbjct:   529 STTDLTTWSLMVRIYAESCCPNEAIGVFREIQARGMRPNTVTIMNLLPVCAQLASLHLVR 588

Query:   320 KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
             + H Y+ R  L  ++RL+  L+D+YAKCGSL  A +VF     +D+V +T+M++ Y + G
Sbjct:   589 QCHGYIIRGGLG-DIRLKGTLLDVYAKCGSLKHAYSVFQSDARRDLVMFTAMVAGYAVHG 647

Query:   380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF 439
             +G +A+ ++S M  S + PD +   ++L+AC HAGL+++G   +  +   + + P +E +
Sbjct:   648 RGKEALMIYSHMTESNIKPDHVFITTMLTACCHAGLIQDGLQIYDSIRTVHGMKPTMEQY 707

Query:   440 ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAP 499
             AC VDL+ R G++++AY  + QMP+EPN  IWG+L+ AC  Y+ MD+G   A+H+     
Sbjct:   708 ACAVDLIARGGRLDDAYSFVTQMPVEPNANIWGTLLRACTTYNRMDLGHSVANHLLQAES 767

Query:   500 NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQ 546
             + +G +VL+SN+YA   +W  V  +R  M  K +KK  G S +E++ Q
Sbjct:   768 DDTGNHVLISNMYAADAKWEGVMELRNLMKKKEMKKPAGCSWLEVDGQ 815

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

TAIR|locus:1009023396 AT5G40405 "AT5G40405" [Arabidopsis thaliana (taxid:3702)]

 Score = 649 (233.5 bits), Expect = 7.4e-80, Sum P(2) = 7.4e-80
 Identities = 129/347 (37%), Positives = 214/347 (61%)

Query:   202 MVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDN 261
             +++ YA+ G     LD C ++ +    PD     +++ +       +V+  +++F  +  
Sbjct:   149 LISLYAELG----CLDSCHKVFNSIPCPDFVCRTAMVTACARCG--DVVFARKLFEGMPE 202

Query:   262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKI 321
             ++ ++WN MI+ YA      EA++++  M++ G++ N +++ SVL AC  L AL  GR  
Sbjct:   203 RDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWA 262

Query:   322 HRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQG 381
             H Y+ER K++  +RL   LVD+YAKCG + +A  VF  M  ++V +W+S ++   M+G G
Sbjct:   263 HSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFG 322

Query:   382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC 441
                + LFS M   G+ P+++ FVSVL  CS  G ++EG+ +F  M  ++ + P++EH+ C
Sbjct:   323 EKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGC 382

Query:   442 LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ 501
             LVDL  RAG++E+A  +I+QMPM+P+  +W SL+ A  +Y N+++G+LA+  +  L    
Sbjct:   383 LVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETAN 442

Query:   502 SGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGASV-EMNDQV 547
              G YVLLSNIYA +  W +V  VR+ M SKG++K PG SV E+N +V
Sbjct:   443 HGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEV 489

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0C899	PP271_ARATH	No assigned EC number	0.6257	0.9089	0.7565	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	571
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-118
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	5e-81
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-73
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	7e-52
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-31
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-23
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	5e-23
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-09
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-09
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-09
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	4e-09
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-07
pfam12854	34	pfam12854, PPR_1, PPR repeat	8e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-06
pfam01535	31	pfam01535, PPR, PPR repeat	2e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-04
pfam01535	31	pfam01535, PPR, PPR repeat	1e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	1e-04
pfam01535	31	pfam01535, PPR, PPR repeat	5e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	6e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	0.002

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  368 bits (947), Expect = e-118
 Identities = 184/512 (35%), Positives = 288/512 (56%), Gaps = 36/512 (7%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y  CG +V  R VFD +  ++ + +N +I  Y  N    + L ++  M     DPD
Sbjct: 228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T   V+ AC       +G ++H  VVK G   ++   N L+ MY   G   EA +V +
Sbjct: 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS--------- 240
            M +KD V+W +M++GY +NG  D+AL+    ME   + PD  T+AS+L +         
Sbjct: 348 RMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407

Query: 241 ------------------VTNTSPENVLSVK------EMFLKLDNKNLVSWNVMIAVYAN 276
                             V N   E     K      E+F  +  K+++SW  +IA    
Sbjct: 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL 467

Query: 277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL 336
           N+   EA+  + QM +  ++PN++++ + L AC  + AL+ G++IH +V R  +  +  L
Sbjct: 468 NNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFL 526

Query: 337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
            NAL+D+Y +CG +  A   F+    +DVVSW  +++ Y   G+G  AV LF++M+ SG+
Sbjct: 527 PNALLDLYVRCGRMNYAWNQFNSHE-KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585

Query: 397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY 456
            PD + F+S+L ACS +G++ +G  YF  M E+Y + P ++H+AC+VDLLGRAGK+ EAY
Sbjct: 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645

Query: 457 DLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG 516
           + I +MP+ P+  +WG+L+ AC ++ ++++G LAA HIF L PN  GYY+LL N+YA AG
Sbjct: 646 NFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG 705

Query: 517 RWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV 547
           +W +V RVRK M   G+   PG S VE+  +V
Sbjct: 706 KWDEVARVRKTMRENGLTVDPGCSWVEVKGKV 737

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  267 bits (685), Expect = 5e-81
 Identities = 130/471 (27%), Positives = 249/471 (52%), Gaps = 35/471 (7%)

Query: 111 YYDALHVYKNMSVHG-FDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGN 169
           + +AL +++ +     F     TY  +++AC    S+     ++  V   G + + +  N
Sbjct: 103 HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162

Query: 170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
            ++ M+ KCG L +ARR+ ++MP +++ +W +++ G    G + EA  + REM       
Sbjct: 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222

Query: 230 DADTMASLLPSVTNTSPE------NVLSVK--------------EMFLK----------- 258
           +  T   +L +             +   +K              +M+ K           
Sbjct: 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF 282

Query: 259 --LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL 316
             +  K  V+WN M+A YA +    EA+ LY +M   G+  +  + + ++     L+ L 
Sbjct: 283 DGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE 342

Query: 317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYG 376
             ++ H  + R     ++    ALVD+Y+K G + +AR VFD+M  ++++SW ++I+ YG
Sbjct: 343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402

Query: 377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI 436
             G+G  AV +F +M+  G+ P+ + F++VLSAC ++GL E+G   F+ M+E +++ PR 
Sbjct: 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462

Query: 437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFH 496
            H+AC+++LLGR G ++EAY +I++ P +P   +W +L+ AC ++ N+++G LAA+ ++ 
Sbjct: 463 MHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG 522

Query: 497 LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQ 546
           + P +   YV+L N+Y  +GR  +  +V + +  KG+   P  + +E+  Q
Sbjct: 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQ 573

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  250 bits (639), Expect = 2e-73
 Identities = 130/398 (32%), Positives = 217/398 (54%), Gaps = 38/398 (9%)

Query: 60  LHSNPSIGLKLMRTYGAC----GQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDAL 115
           L S+PS+G++L     +     G++V   +VF ++  +++  +NVL+  Y     + +AL
Sbjct: 113 LSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEAL 172

Query: 116 HVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMY 175
            +Y  M   G  PD YT+PCVL+ C G   L  G ++H  VV+ G + ++   N L+ MY
Sbjct: 173 CLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232

Query: 176 GKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMA 235
            KCG +  AR V + MP +D ++WN+M++GY +NG   E L++   M  L + PD  T+ 
Sbjct: 233 VKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292

Query: 236 SLLP---------------------------SVTNTSPENVLSVKEM------FLKLDNK 262
           S++                            SV N+  +  LS+         F +++ K
Sbjct: 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352

Query: 263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIH 322
           + VSW  MI+ Y  N +P +A++ Y  ME   + P+ I++ASVL AC  L  L +G K+H
Sbjct: 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH 412

Query: 323 RYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGY 382
              ERK L   + + NAL++MY+KC  + +A  VF  +  +DV+SWTS+I+   ++ + +
Sbjct: 413 ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCF 472

Query: 383 DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR 420
           +A+  F +ML++ L P+S+  ++ LSAC+  G L  G+
Sbjct: 473 EALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGK 509

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  190 bits (484), Expect = 7e-52
 Identities = 110/422 (26%), Positives = 194/422 (45%), Gaps = 36/422 (8%)

Query: 113 DALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLV 172
            AL + ++M       D   Y  + + C    ++  G ++    +       +  GN ++
Sbjct: 69  QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128

Query: 173 AMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD 232
           +M+ + G L  A  V   MP +D+ +WN +V GYA+ G FDEAL +   M    ++PD  
Sbjct: 129 SMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVY 188

Query: 233 TMASLLPS---------------------------VTNT------SPENVLSVKEMFLKL 259
           T   +L +                           V N          +V+S + +F ++
Sbjct: 189 TFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM 248

Query: 260 DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGR 319
             ++ +SWN MI+ Y  N    E ++L+  M    ++P+ +++ SV+ AC  L    LGR
Sbjct: 249 PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308

Query: 320 KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG 379
           ++H YV +     ++ + N+L+ MY   GS  EA  VF +M  +D VSWT+MIS Y  +G
Sbjct: 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNG 368

Query: 380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF 439
               A+  ++ M    + PD I   SVLSAC+  G L+ G    + + E+  L+  +   
Sbjct: 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE-LAERKGLISYVVVA 427

Query: 440 ACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL-YSNMDIGILAADHIFHLA 498
             L+++  +   +++A ++   +P E +   W S++A   L     +  I     +  L 
Sbjct: 428 NALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLK 486

Query: 499 PN 500
           PN
Sbjct: 487 PN 488

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  129 bits (326), Expect = 2e-31
 Identities = 101/413 (24%), Positives = 168/413 (40%), Gaps = 91/413 (22%)

Query: 200 NSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASL--------------------LP 239
           NS +     +G+ ++AL +   M+ LR+  D D   +L                    L 
Sbjct: 55  NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114

Query: 240 SVTNTSPE-------------NVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDL 286
           S  +                  ++    +F K+  ++L SWNV++  YA      EA+ L
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174

Query: 287 YLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK 346
           Y +M   G+ P+  +   VL  CG +  L  GR++H +V R   + ++ + NAL+ MY K
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234

Query: 347 CGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV 406
           CG +  AR VFD+M  +D +SW +MIS Y  +G+  + + LF  M    + PD +   SV
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294

Query: 407 LSACSHAGLLEEGRY----------------------------YFKIMTEQYKLVPRIEH 438
           +SAC    LL + R                                   E  K+  R+E 
Sbjct: 295 ISAC---ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME- 350

Query: 439 FACLVDLL------------GRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDI 486
                D +            G   K  E Y L++Q  + P+E    S+++AC    ++D+
Sbjct: 351 ---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407

Query: 487 GILAADHIFHLAPNQSGY--YVLLSN----IYAKAGRWGDVKRVRKFMNSKGI 533
           G+       H    + G   YV+++N    +Y+K         V   +  K +
Sbjct: 408 GVK-----LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV 455

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  103 bits (259), Expect = 3e-23
 Identities = 74/351 (21%), Positives = 150/351 (42%), Gaps = 58/351 (16%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y  CG + D R VFD +  K  V +N ++  Y  +    +AL +Y  M   G   D
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
            +T+  +++  S    L    Q H  +++ G   ++     LV +Y K G +++AR V +
Sbjct: 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV 249
            MP K++++WN+++AGY  +GR  +A+++   M +  + P                    
Sbjct: 385 RMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP-------------------- 424

Query: 250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM-EVHGIEPNAISVASVLPA 308
                        N V++  +++    + +  +  +++  M E H I+P A+  A ++  
Sbjct: 425 -------------NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE- 470

Query: 309 CGDLSALLLGR-----KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ---M 360
                  LLGR     + +  + R   +P + +  AL+       +L   R   ++   M
Sbjct: 471 -------LLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM 523

Query: 361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS 411
             + + ++  +++ Y  SG+  +A  +   +   GL         +  AC+
Sbjct: 524 GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS--------MHPACT 566

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  103 bits (258), Expect = 5e-23
 Identities = 84/327 (25%), Positives = 142/327 (43%), Gaps = 32/327 (9%)

Query: 49  KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN 108
           KLH ++   + L S   +   L+  Y  C  +     VF  I  K+V+ +  +I     N
Sbjct: 410 KLH-ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLN 468

Query: 109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG 168
              ++AL  ++ M +    P+  T    L AC+   +L+ G +IH  V++ G+ ++ F  
Sbjct: 469 NRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP 527

Query: 169 NGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK 228
           N L+ +Y +CG +  A    N    KDVV+WN ++ GY  +G+   A+++   M    + 
Sbjct: 528 NALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586

Query: 229 PDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK-----NLVSWNVMIAVYANNSMPAEA 283
           PD  T  SLL + + +    V    E F  ++ K     NL  +  ++ +        EA
Sbjct: 587 PDEVTFISLLCACSRSG--MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644

Query: 284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL--QPNLRLENA-- 339
            +   +M    I P+     ++L AC          +IHR+VE  +L  Q    L+    
Sbjct: 645 YNFINKMP---ITPDPAVWGALLNAC----------RIHRHVELGELAAQHIFELDPNSV 691

Query: 340 -----LVDMYAKCGSLTEARTVFDQMR 361
                L ++YA  G   E   V   MR
Sbjct: 692 GYYILLCNLYADAGKWDEVARVRKTMR 718

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 53.2 bits (129), Expect = 2e-09
 Identities = 18/45 (40%), Positives = 30/45 (66%)

Query: 194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL 238
            DVVT+N+++ GY + G+ +EAL +  EM+   IKP+  T + L+
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 59.5 bits (144), Expect = 3e-09
 Identities = 54/310 (17%), Positives = 126/310 (40%), Gaps = 43/310 (13%)

Query: 179 GCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL 238
             +KEA R    + +  + T+N +++  A +   D AL V R ++   +K D     +L+
Sbjct: 420 RAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLI 479

Query: 239 PSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN 298
            +   +       V  MF                            +++ +M   G+E N
Sbjct: 480 STCAKSG-----KVDAMF----------------------------EVFHEMVNAGVEAN 506

Query: 299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD 358
             +  +++  C     +      +  +  K ++P+  + NAL+    + G++  A  V  
Sbjct: 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLA 566

Query: 359 QMRCQ------DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412
           +M+ +      D ++  +++ A   +GQ   A  ++  +    +      +   +++CS 
Sbjct: 567 EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ 626

Query: 413 AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP---MEPNER 469
            G  +     +  M ++  + P    F+ LVD+ G AG +++A+++++      ++    
Sbjct: 627 KGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685

Query: 470 IWGSLVAACC 479
            + SL+ AC 
Sbjct: 686 SYSSLMGACS 695

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 59.5 bits (144), Expect = 3e-09
 Identities = 88/383 (22%), Positives = 153/383 (39%), Gaps = 57/383 (14%)

Query: 114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA 173
           AL V + +   G   DC  Y  ++  C+ S  +    ++   +V  G++ N+     L+ 
Sbjct: 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515

Query: 174 MYGKCGCLKEARRVLNDMPSKDV----VTWNSMVAGYAQNGRFDEALDVCREM--ESLRI 227
              + G + +A      M SK+V    V +N++++   Q+G  D A DV  EM  E+  I
Sbjct: 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575

Query: 228 KPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY 287
            PD  T+ +L+ +  N     V   KE++             MI  Y     P       
Sbjct: 576 DPDHITVGALMKACANAG--QVDRAKEVY------------QMIHEYNIKGTP------- 614

Query: 288 LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC 347
              EV+ I  N+ S        GD         I+  +++K ++P+    +ALVD+    
Sbjct: 615 ---EVYTIAVNSCSQK------GDWD---FALSIYDDMKKKGVKPDEVFFSALVDVAGHA 662

Query: 348 GSLTEARTVFDQMRCQDV----VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF 403
           G L +A  +    R Q +    VS++S++ A   +     A+ L+  +    L P     
Sbjct: 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT---- 718

Query: 404 VSVLSACSHAGLLEEGRYYFKIMT-----EQYKLVPRIEHFACLVDLLGRAGKVEEAYDL 458
           VS ++A   A  L EG    K +      ++  L P    ++ L+    R    +   DL
Sbjct: 719 VSTMNALITA--LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776

Query: 459 IKQMPME---PNERIWGSLVAAC 478
           + Q   +   PN  +   +   C
Sbjct: 777 LSQAKEDGIKPNLVMCRCITGLC 799

Length = 1060

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 59.1 bits (143), Expect = 4e-09
 Identities = 63/284 (22%), Positives = 113/284 (39%), Gaps = 51/284 (17%)

Query: 70  LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD 129
           L+  Y   G+M D R+VFD +  KN++ +N LI  Y N+     A+ +++ M   G  P+
Sbjct: 366 LVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425

Query: 130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN 189
             T+  VL AC  S     G +I  S+ +        +     AM+  C           
Sbjct: 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSEN-------HRIKPRAMHYAC----------- 467

Query: 190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL-PSVTNTSPEN 248
                       M+    + G  DEA  + R       KP  +  A+LL     + + E 
Sbjct: 468 ------------MIELLGREGLLDEAYAMIRRAP---FKPTVNMWAALLTACRIHKNLEL 512

Query: 249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA 308
                E    +  + L ++ V++ +Y ++   AEA  +   ++  G+        S+ PA
Sbjct: 513 GRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL--------SMHPA 564

Query: 309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE 352
           C   + + + ++ H +    +L P  R      ++Y K   L +
Sbjct: 565 C---TWIEVKKQDHSFFSGDRLHPQSR------EIYQKLDELMK 599

Length = 697

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 47.1 bits (113), Expect = 2e-07
 Identities = 14/35 (40%), Positives = 25/35 (71%)

Query: 197 VTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDA 231
           VT+N+++ G  + GR +EAL++ +EM+   I+PD 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 45.0 bits (108), Expect = 8e-07
 Identities = 14/29 (48%), Positives = 22/29 (75%)

Query: 195 DVVTWNSMVAGYAQNGRFDEALDVCREME 223
           DVVT+N+++ G  + GR DEA+++  EME
Sbjct: 6   DVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 45.1 bits (108), Expect = 1e-06
 Identities = 12/49 (24%), Positives = 26/49 (53%)

Query: 364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH 412
           DVV++ ++I  Y   G+  +A+ LF++M   G+ P+   +  ++     
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 12/31 (38%), Positives = 24/31 (77%)

Query: 197 VTWNSMVAGYAQNGRFDEALDVCREMESLRI 227
           VT+NS+++GY + G+ +EAL++ +EM+   +
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 43.5 bits (104), Expect = 4e-06
 Identities = 12/48 (25%), Positives = 26/48 (54%)

Query: 262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC 309
            ++V++N +I  Y       EA+ L+ +M+  GI+PN  + + ++   
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 41.2 bits (98), Expect = 3e-05
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 93  KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKAC 140
            +VV +N LI  Y       +AL ++  M   G  P+ YTY  ++   
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA 299
           V++N +I          EA++L+ +M+  GIEP+ 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGL 396
           V++ S+IS Y  +G+  +A+ LF +M   G+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 196 VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP 229
           + T+N+++   A+ G  D AL V  EM++  +KP
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.0 bits (87), Expect = 5e-04
 Identities = 9/31 (29%), Positives = 19/31 (61%)

Query: 265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGI 295
           V++N +I+ Y       EA++L+ +M+  G+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.1 bits (87), Expect = 6e-04
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS 400
           V++ ++I     +G+  +A+ LF +M   G+ PD 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 35.8 bits (84), Expect = 0.002
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 4/42 (9%)

Query: 338 NALVDMYAKCGSLTEARTVFDQMRCQ----DVVSWTSMISAY 375
           N L+D Y K G + EA  +F++M+ +    +V +++ +I   
Sbjct: 7   NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	571
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.95
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.95
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.93
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.93
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.91
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.91
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.9
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.89
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.88
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.87
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.87
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.86
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.86
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.86
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.86
PRK14574	822	hmsH outer membrane protein; Provisional	99.84
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.81
PRK14574	822	hmsH outer membrane protein; Provisional	99.8
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.8
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.78
KOG2003	840	consensus TPR repeat-containing protein [General f	99.77
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.73
KOG2076	895	consensus RNA polymerase III transcription factor	99.72
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.71
KOG2003	840	consensus TPR repeat-containing protein [General f	99.7
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.69
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.67
KOG2076	895	consensus RNA polymerase III transcription factor	99.65
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.63
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.61
KOG1126	638	consensus DNA-binding cell division cycle control	99.6
KOG1126	638	consensus DNA-binding cell division cycle control	99.59
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.59
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.59
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.59
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.58
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.57
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.56
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.56
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.55
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.54
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.54
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.52
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.48
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.48
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.48
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.47
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.46
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.45
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.45
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.42
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.41
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.39
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.39
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.38
PRK12370	553	invasion protein regulator; Provisional	99.35
KOG1129	478	consensus TPR repeat-containing protein [General f	99.3
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.29
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.28
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.28
PRK12370	553	invasion protein regulator; Provisional	99.26
KOG1129	478	consensus TPR repeat-containing protein [General f	99.26
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.25
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.25
PF13041	50	PPR_2: PPR repeat family	99.25
PF13041	50	PPR_2: PPR repeat family	99.24
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.23
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.22
PRK11189	296	lipoprotein NlpI; Provisional	99.21
PRK11189	296	lipoprotein NlpI; Provisional	99.19
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.19
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.19
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.18
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.17
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.16
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.15
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.15
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.14
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.12
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.08
KOG1125	579	consensus TPR repeat-containing protein [General f	99.07
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.07
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.06
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.04
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.02
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.99
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.98
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.96
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.95
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.95
PRK04841	903	transcriptional regulator MalT; Provisional	98.93
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.92
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.89
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.89
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.87
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.86
PRK15359	144	type III secretion system chaperone protein SscB;	98.82
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.82
PRK04841	903	transcriptional regulator MalT; Provisional	98.78
PRK15359	144	type III secretion system chaperone protein SscB;	98.76
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.76
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.74
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.71
PLN02789	320	farnesyltranstransferase	98.7
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.69
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.66
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.64
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.64
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.64
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.64
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.6
KOG1125	579	consensus TPR repeat-containing protein [General f	98.58
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.57
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.56
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.55
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.54
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.53
PF12854	34	PPR_1: PPR repeat	98.51
PF12854	34	PPR_1: PPR repeat	98.51
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.5
PLN02789	320	farnesyltranstransferase	98.5
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.48
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.46
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.44
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.44
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.41
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.38
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.36
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.35
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.35
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.25
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.24
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.24
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.18
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.15
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.1
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.1
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.08
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.07
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.07
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.07
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.04
KOG0553	304	consensus TPR repeat-containing protein [General f	98.04
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.03
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.02
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.01
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.01
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.0
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.99
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.98
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.97
KOG0553	304	consensus TPR repeat-containing protein [General f	97.97
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.95
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.95
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.95
PRK15331	165	chaperone protein SicA; Provisional	97.94
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.89
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.88
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.88
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.86
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.81
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.81
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.77
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.75
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.74
PF13371	73	TPR_9: Tetratricopeptide repeat	97.72
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.71
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.67
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.65
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.63
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.62
PF12688	120	TPR_5: Tetratrico peptide repeat	97.6
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.6
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.58
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.57
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.56
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.53
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.53
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.51
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.5
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.5
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.5
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.49
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.48
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.48
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.42
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.42
PF13431	34	TPR_17: Tetratricopeptide repeat	97.4
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.4
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.39
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.38
PRK10803	263	tol-pal system protein YbgF; Provisional	97.37
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.33
PF13428	44	TPR_14: Tetratricopeptide repeat	97.27
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.27
PF13371	73	TPR_9: Tetratricopeptide repeat	97.25
PRK10803	263	tol-pal system protein YbgF; Provisional	97.24
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.24
PF12688	120	TPR_5: Tetratrico peptide repeat	97.18
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.16
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.13
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.12
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.11
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.1
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.09
KOG1258	577	consensus mRNA processing protein [RNA processing	97.08
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.05
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.03
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.01
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.94
PF13512	142	TPR_18: Tetratricopeptide repeat	96.89
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.89
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.83
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.64
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.63
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.63
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.59
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.58
PRK11906	458	transcriptional regulator; Provisional	96.58
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	96.56
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.5
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.46
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.42
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.39
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.34
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.28
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.23
KOG1258	577	consensus mRNA processing protein [RNA processing	96.21
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.15
KOG3941	406	consensus Intermediate in Toll signal transduction	96.14
KOG4555	175	consensus TPR repeat-containing protein [Function	96.13
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.05
KOG4234	271	consensus TPR repeat-containing protein [General f	96.02
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.98
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.97
KOG1585	308	consensus Protein required for fusion of vesicles	95.93
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.89
PRK11906	458	transcriptional regulator; Provisional	95.82
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.68
PF13512	142	TPR_18: Tetratricopeptide repeat	95.56
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.55
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.53
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.53
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.52
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.51
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.48
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.47
PRK11619	644	lytic murein transglycosylase; Provisional	95.42
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.41
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.35
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	95.34
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.32
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	95.32
PRK15331	165	chaperone protein SicA; Provisional	95.27
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.24
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.06
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.96
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.93
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.87
KOG3941	406	consensus Intermediate in Toll signal transduction	94.83
KOG4555	175	consensus TPR repeat-containing protein [Function	94.78
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.6
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	94.49
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	94.3
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.18
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.18
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	94.16
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.89
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	93.7
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.5
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.33
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.22
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	93.18
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	93.17
PRK09687	280	putative lyase; Provisional	93.09
KOG4234	271	consensus TPR repeat-containing protein [General f	93.06
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.03
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.92
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.79
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	92.72
PF13428	44	TPR_14: Tetratricopeptide repeat	92.68
KOG4570	418	consensus Uncharacterized conserved protein [Funct	92.57
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.12
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	92.11
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	91.72
KOG4648	536	consensus Uncharacterized conserved protein, conta	91.7
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	91.7
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	91.32
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	91.17
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	90.41
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	90.41
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	90.35
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.12
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	90.07
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.92
KOG1586	288	consensus Protein required for fusion of vesicles	89.67
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	89.66
KOG4648	536	consensus Uncharacterized conserved protein, conta	89.27
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	89.23
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	89.2
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	89.17
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	89.12
KOG1585	308	consensus Protein required for fusion of vesicles	89.09
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	88.79
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	88.69
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	88.28
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	88.27
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	88.23
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	88.19
COG3629	280	DnrI DNA-binding transcriptional activator of the	88.19
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	87.94
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	87.65
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	87.56
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	87.52
COG1747	711	Uncharacterized N-terminal domain of the transcrip	87.29
PRK11619	644	lytic murein transglycosylase; Provisional	87.14
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.98
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	86.97
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	86.97
COG4455	273	ImpE Protein of avirulence locus involved in tempe	86.81
PF13431	34	TPR_17: Tetratricopeptide repeat	86.44
COG3947	361	Response regulator containing CheY-like receiver a	86.19
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	86.14
KOG1550	552	consensus Extracellular protein SEL-1 and related	86.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	86.0
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	85.88
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	85.83
PRK10941	269	hypothetical protein; Provisional	85.73
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	85.47
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	85.2
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	84.96
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	84.63
PF13762	145	MNE1: Mitochondrial splicing apparatus component	84.6
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	84.55
COG4455	273	ImpE Protein of avirulence locus involved in tempe	84.48
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	84.4
KOG4570	418	consensus Uncharacterized conserved protein [Funct	84.26
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	84.16
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	84.15
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	83.81
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	83.54
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	83.38
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	83.25
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	82.86
PRK09687	280	putative lyase; Provisional	82.62
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	82.46
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	82.02
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	81.72
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	81.08
COG1747	711	Uncharacterized N-terminal domain of the transcrip	80.91
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	80.48

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=7.5e-79  Score=650.92  Aligned_cols=534  Identities=35%  Similarity=0.623  Sum_probs=505.9

Q ss_pred             ccccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCC-----------------------------------hhHHHH
Q 008276           25 QYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSN-----------------------------------PSIGLK   69 (571)
Q Consensus        25 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------------------------------~~~~~~   69 (571)
                      +|+..+|+.++.+|.+.|++++|.++|.+|. ..|+.||                                   ..+++.
T Consensus       149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~-~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~  227 (857)
T PLN03077        149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRML-WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA  227 (857)
T ss_pred             CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhH
Confidence            4667777777777777777777777777776 5565555                                   455677


Q ss_pred             HHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHH
Q 008276           70 LMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVG  149 (571)
Q Consensus        70 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a  149 (571)
                      |+.+|+++|++++|.++|+.|+++|..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+
T Consensus       228 Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a  307 (857)
T PLN03077        228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG  307 (857)
T ss_pred             HHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence            88889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 008276          150 LQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP  229 (571)
Q Consensus       150 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  229 (571)
                      .+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|..||..+||.+|.+|++.|++++|+++|++|.+.|+.|
T Consensus       308 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P  387 (857)
T PLN03077        308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP  387 (857)
T ss_pred             HHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHhcCCCCcc---------------------------------HHHHHHHHhhCCCCChhhHHHHHHHHHH
Q 008276          230 DADTMASLLPSVTNTSPEN---------------------------------VLSVKEMFLKLDNKNLVSWNVMIAVYAN  276 (571)
Q Consensus       230 ~~~t~~~ll~~~~~~~~~~---------------------------------~~~a~~~~~~~~~~~~~~~~~l~~~~~~  276 (571)
                      |..||+.++.+|++.+..+                                 ++.|.++|+.+.++|..+|++++.+|++
T Consensus       388 d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~  467 (857)
T PLN03077        388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL  467 (857)
T ss_pred             CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence            9998888888776665432                                 7889999999999999999999999999


Q ss_pred             cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 008276          277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTV  356 (571)
Q Consensus       277 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  356 (571)
                      .|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++
T Consensus       468 ~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~  546 (857)
T PLN03077        468 NNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ  546 (857)
T ss_pred             CCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHH
Confidence            9999999999999986 589999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH
Q 008276          357 FDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI  436 (571)
Q Consensus       357 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  436 (571)
                      |+.+ .+|..+||.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+++.|+.
T Consensus       547 f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~  625 (857)
T PLN03077        547 FNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL  625 (857)
T ss_pred             HHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence            9999 899999999999999999999999999999999999999999999999999999999999999999777999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 008276          437 EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG  516 (571)
Q Consensus       437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  516 (571)
                      .+|++++.+|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.++...+++.+++|++...|..+++.|...|
T Consensus       626 ~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g  705 (857)
T PLN03077        626 KHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG  705 (857)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCCCceE-EEECCEEEEEeCCCCCCCCCc
Q 008276          517 RWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQIIALPLRSSKCLT  561 (571)
Q Consensus       517 ~~~~A~~~~~~m~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  561 (571)
                      +|++|.++.+.|+++|++++||+| |++++++|.|..+|++||+..
T Consensus       706 ~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~  751 (857)
T PLN03077        706 KWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIK  751 (857)
T ss_pred             ChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchH
Confidence            999999999999999999999999 999999999999999999753

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.8e-71  Score=578.80  Aligned_cols=496  Identities=25%  Similarity=0.458  Sum_probs=478.1

Q ss_pred             CCCChhHHHHHHHHhhcCCChHHHHHHHcccCC-----CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHH
Q 008276           60 LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN-----KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYP  134 (571)
Q Consensus        60 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~  134 (571)
                      ..++..+|+.+|..|.+.|++++|.++|+.|..     ||..+|+.++.++.+.++++.+.+++..|.+.|+.||..+|+
T Consensus        83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n  162 (697)
T PLN03081         83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN  162 (697)
T ss_pred             CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence            344667899999999999999999999998853     688899999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCC----CCchhHHHHHHHHHhCC
Q 008276          135 CVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS----KDVVTWNSMVAGYAQNG  210 (571)
Q Consensus       135 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g  210 (571)
                      .++..|++.|+++.|.++|++|.    .||..+|+.++.+|++.|++++|+++|++|.+    |+..+|+.++.+|++.|
T Consensus       163 ~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~  238 (697)
T PLN03081        163 RVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG  238 (697)
T ss_pred             HHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence            99999999999999999999995    58999999999999999999999999999964    78899999999999999


Q ss_pred             CchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHH
Q 008276          211 RFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM  290 (571)
Q Consensus       211 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  290 (571)
                      ..+.+.+++..+.+.|+.||..+++.++.+|++.+.  ++.|.++|+.+.++|..+||+++.+|++.|++++|+++|++|
T Consensus       239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~--~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M  316 (697)
T PLN03081        239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD--IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM  316 (697)
T ss_pred             cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCC--HHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999  999999999999999999999999999999999999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHH
Q 008276          291 EVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTS  370 (571)
Q Consensus       291 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  370 (571)
                      .+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+++.|+++|++.|++++|.++|++|.+||..+||.
T Consensus       317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~  396 (697)
T PLN03081        317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA  396 (697)
T ss_pred             HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 008276          371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG  450 (571)
Q Consensus       371 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  450 (571)
                      ||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+.+++.|+..+|++++.+|++.|
T Consensus       397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G  476 (697)
T PLN03081        397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG  476 (697)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999987799999999999999999999


Q ss_pred             CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          451 KVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       451 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      ++++|.+++++++..|+..+|++++.+|..+|+++.|..+++++.+.+|++..+|..++.+|.+.|++++|.+++++|.+
T Consensus       477 ~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~  556 (697)
T PLN03081        477 LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR  556 (697)
T ss_pred             CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceE-EEECCEEEEEeCCCCCCCCCc
Q 008276          531 KGIKKMPGAS-VEMNDQVQIIALPLRSSKCLT  561 (571)
Q Consensus       531 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  561 (571)
                      +|+.+.||+| |++++++|.|..+|.+||...
T Consensus       557 ~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~  588 (697)
T PLN03081        557 KGLSMHPACTWIEVKKQDHSFFSGDRLHPQSR  588 (697)
T ss_pred             cCCccCCCeeEEEECCeEEEEccCCCCCccHH
Confidence            9999999999 999999999999999998753

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=8.1e-70  Score=581.40  Aligned_cols=507  Identities=27%  Similarity=0.479  Sum_probs=456.4

Q ss_pred             cccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHH
Q 008276           26 YTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSY  105 (571)
Q Consensus        26 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~  105 (571)
                      |+..++..++..|.+.+.++.+.+++..+. +.+..++..++|.|+..|++.|+++.|.++|++|++||..+||.+|.+|
T Consensus        84 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~  162 (857)
T PLN03077         84 VDEDAYVALFRLCEWKRAVEEGSRVCSRAL-SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGY  162 (857)
T ss_pred             CChhHHHHHHHHHhhCCCHHHHHHHHHHHH-HcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHH
Confidence            333344444444444444444444444444 4455555666688899999999999999999999999999999999999


Q ss_pred             HHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHH
Q 008276          106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR  185 (571)
Q Consensus       106 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~  185 (571)
                      ++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..|.+.|+.|+..+++.|+.+|++.|++++|.
T Consensus       163 ~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~  242 (857)
T PLN03077        163 AKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSAR  242 (857)
T ss_pred             HhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCcc-----------------
Q 008276          186 RVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN-----------------  248 (571)
Q Consensus       186 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-----------------  248 (571)
                      ++|++|..+|..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.++.+                 
T Consensus       243 ~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d  322 (857)
T PLN03077        243 LVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD  322 (857)
T ss_pred             HHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccc
Confidence            999999999999999999999999999999999999999999888888888887776655432                 


Q ss_pred             ----------------HHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC
Q 008276          249 ----------------VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL  312 (571)
Q Consensus       249 ----------------~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~  312 (571)
                                      ++.|.++|+.+..+|..+|++++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.
T Consensus       323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~  402 (857)
T PLN03077        323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL  402 (857)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc
Confidence                            8889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008276          313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKML  392 (571)
Q Consensus       313 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  392 (571)
                      |+++.+.++++.+.+.|+.|+..+++.|+++|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|.
T Consensus       403 g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~  482 (857)
T PLN03077        403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML  482 (857)
T ss_pred             chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 008276          393 MSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWG  472 (571)
Q Consensus       393 ~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~  472 (571)
                      . ++.||..||+.++.+|++.|+++.+.+++..+.+. |+.++..++++|+.+|+++|++++|.++|+++  .||..+|+
T Consensus       483 ~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n  558 (857)
T PLN03077        483 L-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWN  558 (857)
T ss_pred             h-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHH
Confidence            6 59999999999999999999999999999999887 88888888888888888888888888888887  78888888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCC
Q 008276          473 SLVAACCLYSNMDIGILAADHIFHLA-PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN-SKGIKKMP  537 (571)
Q Consensus       473 ~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~  537 (571)
                      +++.+|++.|+.++|+++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|++|. +.|+.|+.
T Consensus       559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~  625 (857)
T PLN03077        559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL  625 (857)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence            88888888888888888888888765 4567788888888888888888888888887 67777654

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=9.3e-67  Score=546.52  Aligned_cols=511  Identities=17%  Similarity=0.226  Sum_probs=476.4

Q ss_pred             hccccccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcC-CCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHH
Q 008276           22 LSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHL-HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNV  100 (571)
Q Consensus        22 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  100 (571)
                      .+..++...+..+...|.+.|++++|.++|+.|. +.|+ +++..+++.++..|.+.|.+++|.++|+.|..||..+|+.
T Consensus       364 ~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~-~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~  442 (1060)
T PLN03218        364 VSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDME-KRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNM  442 (1060)
T ss_pred             cCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHH-hCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHH
Confidence            3445667788888888999999999999999999 7775 5678888899999999999999999999999999999999


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 008276          101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC  180 (571)
Q Consensus       101 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~  180 (571)
                      ++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus       443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~  522 (1060)
T PLN03218        443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ  522 (1060)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccCCC----CCchhHHHHHHHHHhCCCchHHHHHHHHHHH--CCCCCCHHHHHHHHHHhcCCCCccHHHHHH
Q 008276          181 LKEARRVLNDMPS----KDVVTWNSMVAGYAQNGRFDEALDVCREMES--LRIKPDADTMASLLPSVTNTSPENVLSVKE  254 (571)
Q Consensus       181 ~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~  254 (571)
                      +++|.++|++|.+    ||..+|+.+|.+|++.|++++|.++|++|..  .|+.||..+|+.++.+|++.++  ++.|.+
T Consensus       523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~--ldeA~e  600 (1060)
T PLN03218        523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ--VDRAKE  600 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC--HHHHHH
Confidence            9999999999964    8999999999999999999999999999986  6899999999999999999999  999999


Q ss_pred             HHhhCC----CCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCC
Q 008276          255 MFLKLD----NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL  330 (571)
Q Consensus       255 ~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  330 (571)
                      +|+.+.    .|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+
T Consensus       601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~  680 (1060)
T PLN03218        601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI  680 (1060)
T ss_pred             HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence            998886    5778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008276          331 QPNLRLENALVDMYAKCGSLTEARTVFDQMR----CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV  406 (571)
Q Consensus       331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  406 (571)
                      .|+..+|+.++.+|++.|++++|.++|++|.    .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus       681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL  760 (1060)
T PLN03218        681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL  760 (1060)
T ss_pred             CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            9999999999999999999999999999995    599999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHhC-
Q 008276          407 LSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR----A-------------------GKVEEAYDLIKQM-  462 (571)
Q Consensus       407 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~-  462 (571)
                      +.+|++.|++++|.++++.|.+. |+.||..+|++++..+.+    +                   +..++|..+|++| 
T Consensus       761 L~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~  839 (1060)
T PLN03218        761 LVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI  839 (1060)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence            99999999999999999999888 999999999999876432    2                   1246799999999 


Q ss_pred             --CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 008276          463 --PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA-PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMPG  538 (571)
Q Consensus       463 --~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~  538 (571)
                        ++.||..+|+.++.++++.++.+.+..+++.+.... +++..+|..++.++.+.  .++|..++++|...|+.|+..
T Consensus       840 ~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~  916 (1060)
T PLN03218        840 SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS  916 (1060)
T ss_pred             HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence              899999999999988888999999999888776543 67888999999987432  368999999999999987775

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=2.3e-61  Score=505.90  Aligned_cols=470  Identities=15%  Similarity=0.210  Sum_probs=439.9

Q ss_pred             cCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCC-----hhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccH
Q 008276           59 HLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN-----VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTY  133 (571)
Q Consensus        59 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~  133 (571)
                      ...++...|..++..|++.|++++|.++|+.|++++     ..+++.++..|.+.|..++|+.+|+.|..    ||..+|
T Consensus       365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty  440 (1060)
T PLN03218        365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF  440 (1060)
T ss_pred             CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence            445678889999999999999999999999998754     44567788889999999999999999974    999999


Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCC----CCCchhHHHHHHHHHhC
Q 008276          134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP----SKDVVTWNSMVAGYAQN  209 (571)
Q Consensus       134 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~  209 (571)
                      +.++.+|++.|+++.|.+++++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.    .||..+|+.+|.+|++.
T Consensus       441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~  520 (1060)
T PLN03218        441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA  520 (1060)
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999999999999999999999998    48999999999999999


Q ss_pred             CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCC------CCChhhHHHHHHHHHHcCCchHH
Q 008276          210 GRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLD------NKNLVSWNVMIAVYANNSMPAEA  283 (571)
Q Consensus       210 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A  283 (571)
                      |++++|.++|++|.+.|+.||..||+.+|.+|++.+.  ++.|.++++.+.      .||..+|++++.+|++.|++++|
T Consensus       521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~--~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA  598 (1060)
T PLN03218        521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGA--VDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA  598 (1060)
T ss_pred             cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999999999999999999999998  999999998873      58999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-
Q 008276          284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC-  362 (571)
Q Consensus       284 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-  362 (571)
                      .++|++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+ 
T Consensus       599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~  678 (1060)
T PLN03218        599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ  678 (1060)
T ss_pred             HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999974 


Q ss_pred             ---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHH
Q 008276          363 ---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF  439 (571)
Q Consensus       363 ---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  439 (571)
                         ||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+. |+.||..+|
T Consensus       679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty  757 (1060)
T PLN03218        679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITY  757 (1060)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHH
Confidence               8999999999999999999999999999999999999999999999999999999999999999887 999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHH
Q 008276          440 ACLVDLLGRAGKVEEAYDLIKQM---PMEPNERIWGSLVAACCL----Y-------------------SNMDIGILAADH  493 (571)
Q Consensus       440 ~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~  493 (571)
                      +.++.+|++.|++++|.+++++|   ++.||..+|+.++..|.+    .                   +..++|..+|++
T Consensus       758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~e  837 (1060)
T PLN03218        758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRE  837 (1060)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHH
Confidence            99999999999999999999999   899999999999876542    1                   124679999999


Q ss_pred             HHhhC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008276          494 IFHLA-PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKK  535 (571)
Q Consensus       494 ~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~  535 (571)
                      |.+.+ .++..+|..++.++...+..+.+..+++.|...+..+
T Consensus       838 M~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~  880 (1060)
T PLN03218        838 TISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQ  880 (1060)
T ss_pred             HHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCc
Confidence            99987 6678899999988889999999999999887666543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1e-59  Score=491.83  Aligned_cols=433  Identities=22%  Similarity=0.332  Sum_probs=337.7

Q ss_pred             cccccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHH
Q 008276           24 TQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIR  103 (571)
Q Consensus        24 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~  103 (571)
                      ..|+..+++.++.+|.+.++++.+.+++..+. +.|+.||..+|+.|+..|++.|++++|.++|++|++||..+||.++.
T Consensus       119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~-~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~  197 (697)
T PLN03081        119 FTLPASTYDALVEACIALKSIRCVKAVYWHVE-SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIG  197 (697)
T ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHH
Confidence            45788899999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHH
Q 008276          104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKE  183 (571)
Q Consensus       104 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~  183 (571)
                      +|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+.+.|+.+|..+++.|+++|+++|++++
T Consensus       198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~  277 (697)
T PLN03081        198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED  277 (697)
T ss_pred             HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCC
Q 008276          184 ARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKN  263 (571)
Q Consensus       184 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~  263 (571)
                      |.++|++|.++|+.+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|                      
T Consensus       278 A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~----------------------  335 (697)
T PLN03081        278 ARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF----------------------  335 (697)
T ss_pred             HHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----------------------
Confidence            9999999999999999999999999999999999999999999999877666655555                      


Q ss_pred             hhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 008276          264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM  343 (571)
Q Consensus       264 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  343 (571)
                                 ++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.    .||..+|+.|+.+
T Consensus       336 -----------~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~  400 (697)
T PLN03081        336 -----------SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAG  400 (697)
T ss_pred             -----------HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHH
Confidence                       4555566666666666666666666666666666666666666666666554    3455566666666


Q ss_pred             HHhcCCHHHHHHHHhhCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhhcCCCHHH
Q 008276          344 YAKCGSLTEARTVFDQMR----CQDVVSWTSMISAYGMSGQGYDAVALFSKMLM-SGLCPDSIAFVSVLSACSHAGLLEE  418 (571)
Q Consensus       344 ~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~~~~~~  418 (571)
                      |++.|+.++|.++|++|.    .||..||+.++.+|++.|+.++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++
T Consensus       401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e  480 (697)
T PLN03081        401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE  480 (697)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence            666666666666666654    25666666666666666666666666666654 4566666666666666666666666


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFH  496 (571)
Q Consensus       419 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  496 (571)
                      |.++++++    ++.|+..+|++++.+|...|+++.|..+++++ +..| +..+|..++..|++.|++++|.++++.|.+
T Consensus       481 A~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~  556 (697)
T PLN03081        481 AYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR  556 (697)
T ss_pred             HHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            66665544    45566666666666666666666666666555 4444 244566666666666666666666666665


Q ss_pred             hC
Q 008276          497 LA  498 (571)
Q Consensus       497 ~~  498 (571)
                      .+
T Consensus       557 ~g  558 (697)
T PLN03081        557 KG  558 (697)
T ss_pred             cC
Confidence            44

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=2.7e-31  Score=291.37  Aligned_cols=494  Identities=11%  Similarity=0.051  Sum_probs=326.0

Q ss_pred             ccccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCC---ChhhHHHH
Q 008276           25 QYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK---NVVFFNVL  101 (571)
Q Consensus        25 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l  101 (571)
                      +.+...+..++.++.+.|++++|.+.|.++. +.. +.+...+..+...+...|++++|.+.|+.....   +...+..+
T Consensus       360 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  437 (899)
T TIGR02917       360 PDDPAALSLLGEAYLALGDFEKAAEYLAKAT-ELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLL  437 (899)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHH
Confidence            4445567778888899999999999999887 554 346677788888888888888888888776542   33455667


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCH
Q 008276          102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL  181 (571)
Q Consensus       102 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~  181 (571)
                      +..+.+.|++++|+.+++.+... .+++..++..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++
T Consensus       438 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~  515 (899)
T TIGR02917       438 ILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNP  515 (899)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCH
Confidence            77777888888888888877764 34456677777777778888888888887777653 34455666677777777777


Q ss_pred             HHHHHHHccCCC---CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhh
Q 008276          182 KEARRVLNDMPS---KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLK  258 (571)
Q Consensus       182 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~  258 (571)
                      ++|.+.|+.+..   .+..++..+...+.+.|++++|...++++...+ +.+...+..+...+...++  .+.+...++.
T Consensus       516 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~  592 (899)
T TIGR02917       516 DDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQ--LKKALAILNE  592 (899)
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCC--HHHHHHHHHH
Confidence            777777777653   245566677777777777777777777776543 2334455556666666665  6666666655


Q ss_pred             CC---CCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChh
Q 008276          259 LD---NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR  335 (571)
Q Consensus       259 ~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  335 (571)
                      +.   +.+...|..++.+|...|++++|...|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+..
T Consensus       593 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~  670 (899)
T TIGR02917       593 AADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTE  670 (899)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHH
Confidence            54   3455667777777777777777777777766543 3345556666666667777777777777766654 34455


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 008276          336 LENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH  412 (571)
Q Consensus       336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~  412 (571)
                      .+..+...+...|++++|..+++.+.+   .+...+..+...+...|++++|.+.|+++...  .|+..++..+..++..
T Consensus       671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~  748 (899)
T TIGR02917       671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLA  748 (899)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHH
Confidence            666666666667777777766666653   34445666666666666666666666666663  3444555556666666


Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 008276          413 AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILA  490 (571)
Q Consensus       413 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~  490 (571)
                      .|++++|...++.+.+  ..+.+...+..+...|...|++++|.+.|+++ ...| +..++..+...+...|+ .+|+..
T Consensus       749 ~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~  825 (899)
T TIGR02917       749 SGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEY  825 (899)
T ss_pred             CCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHH
Confidence            6666666666666655  23445556666666666666666666666665 2222 45556666666666666 556666


Q ss_pred             HHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       491 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      ++++.+..|+++..+..++.++...|++++|.++++++.+.+
T Consensus       826 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  867 (899)
T TIGR02917       826 AEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA  867 (899)
T ss_pred             HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            666666666666666666666666666666666666666544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=6.3e-31  Score=288.54  Aligned_cols=487  Identities=11%  Similarity=0.000  Sum_probs=235.8

Q ss_pred             ChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhHHHHHHHHH
Q 008276           30 SGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFFNVLIRSYV  106 (571)
Q Consensus        30 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~  106 (571)
                      .+..++.++.+.|++++|...+..+. ... +.+...+..+...+.+.|++++|.+.|+.+.+   .+...|..+...+.
T Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  408 (899)
T TIGR02917       331 ARRLLASIQLRLGRVDEAIATLSPAL-GLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKL  408 (899)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHH-hcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            34444555555555555555555554 322 22444455555555555555555555554432   13334444555555


Q ss_pred             HcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHH
Q 008276          107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARR  186 (571)
Q Consensus       107 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~  186 (571)
                      ..|++++|++.|+.+.+... ........++..+.+.|++++|..+++.+.... +.+..++..+..++...|++++|..
T Consensus       409 ~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~  486 (899)
T TIGR02917       409 SQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKARE  486 (899)
T ss_pred             hCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHH
Confidence            55555555555555544321 112223334444555555555555555554432 3344455555555555555555555


Q ss_pred             HHccCCC---CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCC---
Q 008276          187 VLNDMPS---KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLD---  260 (571)
Q Consensus       187 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~---  260 (571)
                      .|+++.+   .+...+..+...+...|++++|.+.|+++...+ +.+..++..+...+...++  .+.+...+.+..   
T Consensus       487 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~  563 (899)
T TIGR02917       487 AFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGN--EEEAVAWLEKAAELN  563 (899)
T ss_pred             HHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhC
Confidence            5554432   223344444555555555555555555554432 2233344444444444443  444444444432   


Q ss_pred             CCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHH
Q 008276          261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL  340 (571)
Q Consensus       261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  340 (571)
                      +.+...+..++..|...|++++|..+++++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+
T Consensus       564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l  641 (899)
T TIGR02917       564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLL  641 (899)
T ss_pred             ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence            2233444445555555555555555555554432 3344445555555555555555555555555433 2333444445


Q ss_pred             HHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHH
Q 008276          341 VDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE  417 (571)
Q Consensus       341 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~  417 (571)
                      ..++...|++++|...|+.+.+   .+..++..++..+...|++++|..+++.+.+.+ +++...+..+...+...|+++
T Consensus       642 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~  720 (899)
T TIGR02917       642 ADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYP  720 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHH
Confidence            5555555555555555554432   233445555555555555555555555555432 223334444455555555555


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PME-PNERIWGSLVAACCLYSNMDIGILAADHIF  495 (571)
Q Consensus       418 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  495 (571)
                      +|...|+.+...   .|+..++..++.++.+.|++++|.+.++++ ... .+...+..+...|...|++++|...|+++.
T Consensus       721 ~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  797 (899)
T TIGR02917       721 AAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVV  797 (899)
T ss_pred             HHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            555555555432   233344444555555555555555555544 112 234444555555555555555555555555


Q ss_pred             hhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          496 HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       496 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      +..|+++.++..++.++...|+ .+|+.+++++.+
T Consensus       798 ~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~  831 (899)
T TIGR02917       798 KKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALK  831 (899)
T ss_pred             HhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence            5555555555555555555555 445555555443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.95  E-value=4.6e-23  Score=226.77  Aligned_cols=491  Identities=11%  Similarity=0.007  Sum_probs=243.6

Q ss_pred             hhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhH-HHHHHHHhhcCCChHHHHHHHcccCC--C-ChhhHHHHHHHHH
Q 008276           31 GDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSI-GLKLMRTYGACGQMVDTRHVFDEITN--K-NVVFFNVLIRSYV  106 (571)
Q Consensus        31 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~  106 (571)
                      ...+++++.+.|++++|.+.+..+. +.+ +|+... ...+.......|+.++|++.|+.+..  | +...+..+...+.
T Consensus       115 ~l~~A~ll~~~g~~~eA~~~~~~~l-~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~  192 (1157)
T PRK11447        115 ALQQARLLATTGRTEEALASYDKLF-NGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLF  192 (1157)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHc-cCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3556778999999999999999998 544 334322 22222233346999999999998875  3 5567888999999


Q ss_pred             HcCChhHHHHHHHHHHhCCCC----------------CCcc---cHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhH
Q 008276          107 NNYLYYDALHVYKNMSVHGFD----------------PDCY---TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFN  167 (571)
Q Consensus       107 ~~~~~~~A~~~~~~m~~~g~~----------------p~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~  167 (571)
                      ..|++++|+..++++.+....                ++..   .+...+..+-.......+...+.........|+.. 
T Consensus       193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-  271 (1157)
T PRK11447        193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-  271 (1157)
T ss_pred             ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-
Confidence            999999999999998653210                0000   01111111111111222222222222211111111 


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHccCCC--C-CchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHHHHHHH------
Q 008276          168 GNGLVAMYGKCGCLKEARRVLNDMPS--K-DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP-DADTMASL------  237 (571)
Q Consensus       168 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~l------  237 (571)
                      .......+...|++++|+..|++..+  | +...+..+..++.+.|++++|+..|++..+..... ....+..+      
T Consensus       272 ~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~  351 (1157)
T PRK11447        272 ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY  351 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence            11223334444555555555544432  2 33444444445555555555555555444322111 10011000      


Q ss_pred             ------HHHhcCCCCccHHHHHHHHhhCC---CCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHH-----
Q 008276          238 ------LPSVTNTSPENVLSVKEMFLKLD---NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA-----  303 (571)
Q Consensus       238 ------l~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-----  303 (571)
                            -..+.+.++  .+.|...+++..   +.+...+..+...+...|++++|++.|+++.+.. +.+...+.     
T Consensus       352 ~~~~~~g~~~~~~g~--~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l  428 (1157)
T PRK11447        352 WLLIQQGDAALKANN--LAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANL  428 (1157)
T ss_pred             HHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence                  011122222  444444444333   1233344444445555555555555555444321 11111111     


Q ss_pred             -------------------------------------HHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 008276          304 -------------------------------------SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK  346 (571)
Q Consensus       304 -------------------------------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  346 (571)
                                                           .+...+...|++++|...++++.+.. +.+...+..+...|.+
T Consensus       429 ~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~  507 (1157)
T PRK11447        429 YRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQ  507 (1157)
T ss_pred             HHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence                                                 12223334555566666665555543 2234444455555666


Q ss_pred             cCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC-----------------------------
Q 008276          347 CGSLTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMS-----------------------------  394 (571)
Q Consensus       347 ~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----------------------------  394 (571)
                      .|++++|...++++.+  | +...+..+...+...++.++|+..++.+...                             
T Consensus       508 ~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G  587 (1157)
T PRK11447        508 AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG  587 (1157)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence            6666666665555432  2 2222222222233334444443333322110                             


Q ss_pred             ----------CCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 008276          395 ----------GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-P  463 (571)
Q Consensus       395 ----------g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~  463 (571)
                                ..+++...+..+...+...|++++|...|+.+.+.  .+.+...+..++.+|...|++++|++.++++ .
T Consensus       588 ~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~  665 (1157)
T PRK11447        588 KEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPA  665 (1157)
T ss_pred             CHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence                      02223334455555666666666666666666652  2334555666666666666666666666655 3


Q ss_pred             CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc------hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          464 MEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS------GYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       464 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      ..| +...+..+..++...|++++|.+.++++++..|+++      ..+..++.++...|++++|+..+++...
T Consensus       666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            333 344455555566666666666666666666554333      2444556666666666666666666654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.95  E-value=3.2e-22  Score=220.16  Aligned_cols=490  Identities=12%  Similarity=0.034  Sum_probs=295.8

Q ss_pred             hhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC--CCh-hhH---------
Q 008276           31 GDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN--KNV-VFF---------   98 (571)
Q Consensus        31 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~---------   98 (571)
                      .-..+++....++.+.|.+.+.++. ... +.++..+..++..+...|+.++|.+.++++.+  |+. ..+         
T Consensus        31 Ll~q~~~~~~~~~~d~a~~~l~kl~-~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~  108 (1157)
T PRK11447         31 LLEQVRLGEATHREDLVRQSLYRLE-LID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLS  108 (1157)
T ss_pred             HHHHHHHHHhhCChHHHHHHHHHHH-ccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Confidence            3446677788899999999999998 554 44788999999999999999999999998865  322 221         


Q ss_pred             -------HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCccc-HHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHH
Q 008276           99 -------NVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYT-YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNG  170 (571)
Q Consensus        99 -------~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~  170 (571)
                             ..+...+.+.|++++|+..|+++.+.+ +|+... ...........++.++|.+.++++.+.. +.+...+..
T Consensus       109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~  186 (1157)
T PRK11447        109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNT  186 (1157)
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence                   233456888999999999999998753 333221 1111222335689999999999999875 556778889


Q ss_pred             HHHHHHhCCCHHHHHHHHccCCCCCc-----------------------hhHH---------------------------
Q 008276          171 LVAMYGKCGCLKEARRVLNDMPSKDV-----------------------VTWN---------------------------  200 (571)
Q Consensus       171 l~~~~~~~g~~~~A~~~~~~~~~~~~-----------------------~~~~---------------------------  200 (571)
                      +..++...|+.++|+..++++.....                       ..+.                           
T Consensus       187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~  266 (1157)
T PRK11447        187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA  266 (1157)
T ss_pred             HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence            99999999999999999987642100                       0000                           


Q ss_pred             -------HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCC--CCh---hhH-
Q 008276          201 -------SMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDN--KNL---VSW-  267 (571)
Q Consensus       201 -------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~--~~~---~~~-  267 (571)
                             .....+...|++++|+..|++..+.. +.+...+..+-..+.+.++  .++|...+++..+  |+.   ..| 
T Consensus       267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~--~~eA~~~l~~Al~~~p~~~~~~~~~  343 (1157)
T PRK11447        267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGD--RARAVAQFEKALALDPHSSNRDKWE  343 (1157)
T ss_pred             CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCccchhHHH
Confidence                   11234556778888888887777642 2245556666666666666  7777777766543  211   111 


Q ss_pred             -----------HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhH
Q 008276          268 -----------NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL  336 (571)
Q Consensus       268 -----------~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  336 (571)
                                 ......+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+.. +.+...
T Consensus       344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a  421 (1157)
T PRK11447        344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNA  421 (1157)
T ss_pred             HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence                       122345667788888888888877653 3345566667777788888888888888877654 223333


Q ss_pred             HHHHHHHH------------------------------------------HhcCCHHHHHHHHhhCCC--C-ChhHHHHH
Q 008276          337 ENALVDMY------------------------------------------AKCGSLTEARTVFDQMRC--Q-DVVSWTSM  371 (571)
Q Consensus       337 ~~~l~~~~------------------------------------------~~~~~~~~a~~~~~~~~~--~-~~~~~~~l  371 (571)
                      +..+...|                                          ...|++++|.+.|++..+  | +...+..+
T Consensus       422 ~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~L  501 (1157)
T PRK11447        422 VRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRL  501 (1157)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            33333333                                          233444444444444332  2 22333444


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc--------------------
Q 008276          372 ISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY--------------------  430 (571)
Q Consensus       372 i~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------  430 (571)
                      ...|.+.|++++|...++++.+.  .| +...+..+...+...++.++|...++.+....                    
T Consensus       502 A~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~  579 (1157)
T PRK11447        502 AQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET  579 (1157)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence            44444444444444444444432  22 22222222223334444444444444321100                    


Q ss_pred             ------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 008276          431 ------------------KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILA  490 (571)
Q Consensus       431 ------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~  490 (571)
                                        ..+.+...+..+...+.+.|++++|++.|+++ ...| +...+..++..+...|++++|+..
T Consensus       580 a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~  659 (1157)
T PRK11447        580 ANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ  659 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence                              01112223334455555556666666666655 3334 455566666666666666666666


Q ss_pred             HHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276          491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       491 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                      ++++.+..|+++.++..++.++...|++++|.++++++...
T Consensus       660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~  700 (1157)
T PRK11447        660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ  700 (1157)
T ss_pred             HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence            66666666666666666666666666666666666666544

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.93  E-value=5.3e-21  Score=201.09  Aligned_cols=476  Identities=10%  Similarity=0.042  Sum_probs=311.6

Q ss_pred             CChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCCh--hhHHHHHHHHHHcCChhHHHHHHH
Q 008276           42 PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNV--VFFNVLIRSYVNNYLYYDALHVYK  119 (571)
Q Consensus        42 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~  119 (571)
                      |++++|...|.+.+ +..+. ++.++..|...|...|+.++|+..+++..+.++  ..|..++..+   +++.+|..+++
T Consensus        58 Gd~~~A~~~l~~Al-~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye  132 (987)
T PRK09782         58 NDEATAIREFEYIH-QQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVE  132 (987)
T ss_pred             CCHHHHHHHHHHHH-HhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHH
Confidence            66666666666666 44433 366666666666666666666666665543211  1222212111   45555555555


Q ss_pred             HHHhCC--------------------------------------CCCCcccHHHH-HHHhhcCCChHHHHHHHHHHHHhC
Q 008276          120 NMSVHG--------------------------------------FDPDCYTYPCV-LKACSGSNSLLVGLQIHCSVVKVG  160 (571)
Q Consensus       120 ~m~~~g--------------------------------------~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~g  160 (571)
                      ++....                                      ..|+....... .+.|.+.+++++|+.++..+.+.+
T Consensus       133 ~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~  212 (987)
T PRK09782        133 ELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN  212 (987)
T ss_pred             HHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC
Confidence            544321                                      12223323333 566777788888888888888876


Q ss_pred             CCCchhHHHHHHHHHHh-CCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCC-CCHHHHHHHH
Q 008276          161 LDYNLFNGNGLVAMYGK-CGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIK-PDADTMASLL  238 (571)
Q Consensus       161 ~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~ll  238 (571)
                       +.+......|..+|.. .++ +++..+++...+.+...+..++..+.+.|+.++|.++++++...-.. |...++..++
T Consensus       213 -pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l  290 (987)
T PRK09782        213 -TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLL  290 (987)
T ss_pred             -CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHH
Confidence             3445556666667777 366 77777776544567788889999999999999999999988654322 5555554444


Q ss_pred             HHhcCCCCcc----------------------------------------------------------------------
Q 008276          239 PSVTNTSPEN----------------------------------------------------------------------  248 (571)
Q Consensus       239 ~~~~~~~~~~----------------------------------------------------------------------  248 (571)
                      .-........                                                                      
T Consensus       291 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~  370 (987)
T PRK09782        291 SKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQ  370 (987)
T ss_pred             HhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHh
Confidence            3332221000                                                                      


Q ss_pred             ---------------------HHHHHHHHhhCCC--CC----hhhHHHHHHHHHHcCC---chHH---------------
Q 008276          249 ---------------------VLSVKEMFLKLDN--KN----LVSWNVMIAVYANNSM---PAEA---------------  283 (571)
Q Consensus       249 ---------------------~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~g~---~~~A---------------  283 (571)
                                           .+.|..+++...+  ++    ...-..++..|.+.+.   ..++               
T Consensus       371 ~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  450 (987)
T PRK09782        371 QEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQW  450 (987)
T ss_pred             cCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHH
Confidence                                 3334444444332  11    1123345555555543   2222               


Q ss_pred             -------HHHHHHHHHC-CC-CC--CHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 008276          284 -------VDLYLQMEVH-GI-EP--NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE  352 (571)
Q Consensus       284 -------~~~~~~m~~~-g~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  352 (571)
                             ...+...... +. ++  +...+..+..++.. ++.++|...+.......  |+......+...+...|++++
T Consensus       451 ~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~ee  527 (987)
T PRK09782        451 QSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYAT  527 (987)
T ss_pred             HhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHH
Confidence                   2223333221 12 23  55666666666665 78888888777777654  444443344555568899999


Q ss_pred             HHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008276          353 ARTVFDQMRC--QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS-IAFVSVLSACSHAGLLEEGRYYFKIMTEQ  429 (571)
Q Consensus       353 a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  429 (571)
                      |...|+.+..  |+...+..+...+.+.|++++|...+++..+..  |+. ..+..+...+...|++++|...+++..+.
T Consensus       528 Ai~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l  605 (987)
T PRK09782        528 ALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI  605 (987)
T ss_pred             HHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            9999987654  445556677778888999999999999888753  433 33444444555669999999999988754


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 008276          430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL  507 (571)
Q Consensus       430 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  507 (571)
                         .|+...+..+..++.+.|+.++|+..+++. ...| +...+..+..++...|++++|+..++++++..|+++.++..
T Consensus       606 ---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n  682 (987)
T PRK09782        606 ---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ  682 (987)
T ss_pred             ---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence               566778888888999999999999999887 5566 56677778888888999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          508 LSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       508 l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      ++.++...|++++|+..+++..+..
T Consensus       683 LA~al~~lGd~~eA~~~l~~Al~l~  707 (987)
T PRK09782        683 LAYVNQRLDDMAATQHYARLVIDDI  707 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            9999999999999999998887554

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.93  E-value=3.1e-22  Score=187.15  Aligned_cols=442  Identities=17%  Similarity=0.158  Sum_probs=321.4

Q ss_pred             hHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhHHHHHHHHHHc
Q 008276           32 DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFFNVLIRSYVNN  108 (571)
Q Consensus        32 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~  108 (571)
                      ..|++-+-+.|++.+|.+--..+- ..+ +.+....-.+-..+.+..+.++...--....+   .-..+|..+...+-..
T Consensus        52 l~lah~~yq~gd~~~a~~h~nmv~-~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker  129 (966)
T KOG4626|consen   52 LELAHRLYQGGDYKQAEKHCNMVG-QED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER  129 (966)
T ss_pred             HHHHHHHHhccCHHHHHHHHhHhh-ccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence            334444555555555555333332 221 22222223333344444444432222111111   1234666677777777


Q ss_pred             CChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHhCCCHHHHHHH
Q 008276          109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNL-FNGNGLVAMYGKCGCLKEARRV  187 (571)
Q Consensus       109 ~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~g~~~~A~~~  187 (571)
                      |++.+|+.+|+.+.+.. +-....|..+..++...|+.+.|.+.|.+.++.  .|+. -..+.+...+...|++++|...
T Consensus       130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c  206 (966)
T KOG4626|consen  130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC  206 (966)
T ss_pred             chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence            77777777777776642 224456666666677777777777777666654  2332 2333445555566777777666


Q ss_pred             HccCCC--CC-chhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCCh
Q 008276          188 LNDMPS--KD-VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNL  264 (571)
Q Consensus       188 ~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~  264 (571)
                      |.+..+  |. ...|+.|...+...|+...|+..|++..+-  .|+                                =.
T Consensus       207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~--------------------------------f~  252 (966)
T KOG4626|consen  207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPN--------------------------------FL  252 (966)
T ss_pred             HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCc--------------------------------ch
Confidence            665543  32 345667777777777777777777766542  332                                14


Q ss_pred             hhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 008276          265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN-AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM  343 (571)
Q Consensus       265 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  343 (571)
                      .+|-.|...|-..+.+++|+..|.+....  .|+ ...+..+...|...|.++.|+..|++.++.. +.-...|+.|..+
T Consensus       253 dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanA  329 (966)
T KOG4626|consen  253 DAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANA  329 (966)
T ss_pred             HHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHH
Confidence            57888999999999999999999888764  555 4677778888999999999999999999875 4446789999999


Q ss_pred             HHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHH
Q 008276          344 YAKCGSLTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEG  419 (571)
Q Consensus       344 ~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a  419 (571)
                      +...|++.+|...+.....  | .....+.|...|...|.+++|..+|....+  +.|.-. ..+.|...|-.+|++++|
T Consensus       330 Lkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~A  407 (966)
T KOG4626|consen  330 LKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDA  407 (966)
T ss_pred             HHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHH
Confidence            9999999999999998875  3 456789999999999999999999999998  777654 788999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          420 RYYFKIMTEQYKLVPRI-EHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN-ERIWGSLVAACCLYSNMDIGILAADHIFH  496 (571)
Q Consensus       420 ~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  496 (571)
                      +..|++..   .+.|+. ..|+.+...|...|+.+.|...+.+. .+.|. ...++.|...|...|+..+|+..|+.+++
T Consensus       408 i~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk  484 (966)
T KOG4626|consen  408 IMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK  484 (966)
T ss_pred             HHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence            99999998   567776 78999999999999999999999887 77774 56889999999999999999999999999


Q ss_pred             hCCCCchhHHHHHHHHHhcCCHHH
Q 008276          497 LAPNQSGYYVLLSNIYAKAGRWGD  520 (571)
Q Consensus       497 ~~p~~~~~~~~l~~~~~~~g~~~~  520 (571)
                      +.|+.+.+|..++.++.-..+|.+
T Consensus       485 lkPDfpdA~cNllh~lq~vcdw~D  508 (966)
T KOG4626|consen  485 LKPDFPDAYCNLLHCLQIVCDWTD  508 (966)
T ss_pred             cCCCCchhhhHHHHHHHHHhcccc
Confidence            999999999999988776665554

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.91  E-value=9.5e-20  Score=188.47  Aligned_cols=416  Identities=11%  Similarity=-0.004  Sum_probs=296.7

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 008276           98 FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGK  177 (571)
Q Consensus        98 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~  177 (571)
                      +......+.+.|++++|+..|++..+.  .|+...|..+..++.+.|++++|...++..++.. +.+...+..+..+|..
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~  206 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG  206 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            456677888999999999999998874  6788888888888999999999999999988764 4456788889999999


Q ss_pred             CCCHHHHHHHHccCCCC---CchhHHHHHHHHHhCCCchHHHHHHHHHHHCC--CCCCHHHHHHHHHHhcCCCCccHHHH
Q 008276          178 CGCLKEARRVLNDMPSK---DVVTWNSMVAGYAQNGRFDEALDVCREMESLR--IKPDADTMASLLPSVTNTSPENVLSV  252 (571)
Q Consensus       178 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~~~a  252 (571)
                      .|++++|+..|..+...   +......++..+..    ..+........+..  ..|........+..+.....  .   
T Consensus       207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~---  277 (615)
T TIGR00990       207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPR--P---  277 (615)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcc--h---
Confidence            99999998877654321   11111111211111    12222222222221  11222111111111110000  0   


Q ss_pred             HHHHhhCCCCC---hhhHHHHHHHH---HHcCCchHHHHHHHHHHHCC-CCC-CHHHHHHHHHHhccCCchHHHHHHHHH
Q 008276          253 KEMFLKLDNKN---LVSWNVMIAVY---ANNSMPAEAVDLYLQMEVHG-IEP-NAISVASVLPACGDLSALLLGRKIHRY  324 (571)
Q Consensus       253 ~~~~~~~~~~~---~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~g-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~  324 (571)
                       .-+....+.+   ...+..+...+   ...+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...++.
T Consensus       278 -~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k  356 (615)
T TIGR00990       278 -AGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK  356 (615)
T ss_pred             -hhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence             0011111111   11121221111   23478999999999998765 233 345677777788899999999999999


Q ss_pred             HHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H
Q 008276          325 VERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD-S  400 (571)
Q Consensus       325 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~  400 (571)
                      ..+.. +.....|..+...+...|++++|...|+.+.+   .+...|..+...+...|++++|+..|++.++.  .|+ .
T Consensus       357 al~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~  433 (615)
T TIGR00990       357 SIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFI  433 (615)
T ss_pred             HHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCH
Confidence            99875 34466788888899999999999999998764   35678999999999999999999999999984  554 5


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HH-------H
Q 008276          401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNE-RI-------W  471 (571)
Q Consensus       401 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~-------~  471 (571)
                      ..+..+...+.+.|++++|...|+...+.  .+.+...++.+..++...|++++|++.|++. ...|+. ..       +
T Consensus       434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~  511 (615)
T TIGR00990       434 FSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI  511 (615)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence            57778888899999999999999999873  4556788889999999999999999999986 444421 11       1


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276          472 GSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       472 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                      +..+..+...|++++|...++++++++|++..++..++.++...|++++|++++++..+.
T Consensus       512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            112222334699999999999999999999999999999999999999999999998654

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=6.8e-21  Score=178.27  Aligned_cols=420  Identities=14%  Similarity=0.126  Sum_probs=303.8

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 008276           99 NVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKC  178 (571)
Q Consensus        99 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  178 (571)
                      ..|..-..+.|++++|.+.-...-+.+ +.+......+-..+.+..+++...+.-....+.. +.-..+|..+.+.+-..
T Consensus        52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker  129 (966)
T KOG4626|consen   52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER  129 (966)
T ss_pred             HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence            334445555666666665544433321 1222222223333444444444443333333221 23345566666666666


Q ss_pred             CCHHHHHHHHccCCC---CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcC-CCCccHHHHHH
Q 008276          179 GCLKEARRVLNDMPS---KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN-TSPENVLSVKE  254 (571)
Q Consensus       179 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~~~a~~  254 (571)
                      |++++|+..++.+.+   ..+..|..+..++...|+.+.|.+.|.+.++  +.|+.....+-+..+.+ .|.  +.++..
T Consensus       130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Gr--l~ea~~  205 (966)
T KOG4626|consen  130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGR--LEEAKA  205 (966)
T ss_pred             chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcc--cchhHH
Confidence            666666666665554   2345566666666666666666666665554  23443332222221111 122  444444


Q ss_pred             HHhhCCC--CC-hhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHhccCCchHHHHHHHHHHHHcCC
Q 008276          255 MFLKLDN--KN-LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN-AISVASVLPACGDLSALLLGRKIHRYVERKKL  330 (571)
Q Consensus       255 ~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  330 (571)
                      .+.+..+  |. ..+|+.|...+-.+|+...|+..|++..+.  .|+ ...|..+...|...+.++.|...|....... 
T Consensus       206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-  282 (966)
T KOG4626|consen  206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-  282 (966)
T ss_pred             HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence            4443332  22 467999999999999999999999998874  554 4678888889999999999999999888764 


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 008276          331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRC--QD-VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS-IAFVSV  406 (571)
Q Consensus       331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l  406 (571)
                      +.....+..+...|...|.++.|+..+++..+  |+ ...|+.|..++-..|+..+|...|.+.+.  ..|+. ...+.|
T Consensus       283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NL  360 (966)
T KOG4626|consen  283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNL  360 (966)
T ss_pred             CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHH
Confidence            44556777788889999999999999999875  44 45899999999999999999999999998  56654 488899


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 008276          407 LSACSHAGLLEEGRYYFKIMTEQYKLVPRI-EHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN-ERIWGSLVAACCLYSN  483 (571)
Q Consensus       407 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~  483 (571)
                      ...+...|.+++|.++|....+   +.|.. ...+.|...|-.+|++++|+.-+++. .++|+ ...|+.+...|-..|+
T Consensus       361 gni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~  437 (966)
T KOG4626|consen  361 GNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD  437 (966)
T ss_pred             HHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh
Confidence            9999999999999999999885   34544 67899999999999999999999988 88885 6689999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          484 MDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       484 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      .+.|++.+.+++..+|.-..++..|+.+|...|+..+|+.-+++...-.
T Consensus       438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk  486 (966)
T KOG4626|consen  438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK  486 (966)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence            9999999999999999999999999999999999999999999887543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.90  E-value=2e-18  Score=181.84  Aligned_cols=442  Identities=10%  Similarity=-0.032  Sum_probs=296.7

Q ss_pred             hhcCCChHHHHHHHcccCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHH
Q 008276           74 YGACGQMVDTRHVFDEITN--K-NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGL  150 (571)
Q Consensus        74 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~  150 (571)
                      +...|++++|+..|+...+  | +..++..|...|.+.|++++|+..+++..+.  .|+...|..++..+   +++++|.
T Consensus        54 ~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~  128 (987)
T PRK09782         54 AQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSV  128 (987)
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHH
Confidence            3345999999999998865  3 5678899999999999999999999999985  56666665555333   8899999


Q ss_pred             HHHHHHHHhCCCCchhHHHHHHHH--------HHhCCCHHHHHHHHccCCCC--CchhHHHH-HHHHHhCCCchHHHHHH
Q 008276          151 QIHCSVVKVGLDYNLFNGNGLVAM--------YGKCGCLKEARRVLNDMPSK--DVVTWNSM-VAGYAQNGRFDEALDVC  219 (571)
Q Consensus       151 ~~~~~~~~~g~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~--~~~~~~~l-i~~~~~~g~~~~a~~~~  219 (571)
                      .+++++.+.. +-+..++..+...        |.+.++..+++.  .....+  +..+.... ...|.+.|++++|++++
T Consensus       129 ~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL  205 (987)
T PRK09782        129 TTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY  205 (987)
T ss_pred             HHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            9999999875 4455566656655        666666666666  333333  34444444 88999999999999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHhcCC-CCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHH--------
Q 008276          220 REMESLRIKPDADTMASLLPSVTNT-SPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQM--------  290 (571)
Q Consensus       220 ~~m~~~g~~p~~~t~~~ll~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m--------  290 (571)
                      .++.+.+... ..-...+-.++... +.   +.+..+++...+.+...+..++..|.+.|+.++|..+++++        
T Consensus       206 ~~L~k~~pl~-~~~~~~L~~ay~q~l~~---~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~  281 (987)
T PRK09782        206 NEARQQNTLS-AAERRQWFDVLLAGQLD---DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA  281 (987)
T ss_pred             HHHHhcCCCC-HHHHHHHHHHHHHhhCH---HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence            9998875333 22222222233321 11   22222222222223333333333333333333333333222        


Q ss_pred             --------------------------------------------------------------------------------
Q 008276          291 --------------------------------------------------------------------------------  290 (571)
Q Consensus       291 --------------------------------------------------------------------------------  290 (571)
                                                                                                      
T Consensus       282 ~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  361 (987)
T PRK09782        282 QEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEA  361 (987)
T ss_pred             ccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHH
Confidence                                                                                            


Q ss_pred             -----------------------------------------HHC--CCCCCHHHHHHHHHHhccCCc---hHHHH-----
Q 008276          291 -----------------------------------------EVH--GIEPNAISVASVLPACGDLSA---LLLGR-----  319 (571)
Q Consensus       291 -----------------------------------------~~~--g~~~~~~~~~~ll~~~~~~~~---~~~a~-----  319 (571)
                                                               ...  ...++......++..+.+.+.   ...+.     
T Consensus       362 ~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~  441 (987)
T PRK09782        362 LRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKP  441 (987)
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccc
Confidence                                                     210  001111122233444444333   11111     


Q ss_pred             -----------------HHHHHHHHc-CC-CC--ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHH
Q 008276          320 -----------------KIHRYVERK-KL-QP--NLRLENALVDMYAKCGSLTEARTVFDQMRC--QDVVSWTSMISAYG  376 (571)
Q Consensus       320 -----------------~~~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~  376 (571)
                                       ......... +. ++  +...+..+..++.. ++.++|...+.....  |+......+...+.
T Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~  520 (987)
T PRK09782        442 LPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAY  520 (987)
T ss_pred             cccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence                             111112111 11 33  56677777777776 889899997776653  55444334455556


Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008276          377 MSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAY  456 (571)
Q Consensus       377 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  456 (571)
                      ..|++++|...|+++..  ..|+...+..+...+...|++++|..+++...+.  .++....+..+...+.+.|++++|.
T Consensus       521 ~~Gr~eeAi~~~rka~~--~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl  596 (987)
T PRK09782        521 QVEDYATALAAWQKISL--HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELAL  596 (987)
T ss_pred             HCCCHHHHHHHHHHHhc--cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHH
Confidence            89999999999999866  3555556667778889999999999999999874  2333344444445555679999999


Q ss_pred             HHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          457 DLIKQM-PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       457 ~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      ..+++. ...|+...|..+..++.+.|++++|+..++++++++|+++.++..++.++...|++++|+..+++..+..
T Consensus       597 ~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~  673 (987)
T PRK09782        597 NDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL  673 (987)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            999988 6778888999999999999999999999999999999999999999999999999999999999987654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.89  E-value=1.8e-20  Score=184.36  Aligned_cols=282  Identities=11%  Similarity=0.034  Sum_probs=198.2

Q ss_pred             hhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC---HHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 008276          265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN---AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV  341 (571)
Q Consensus       265 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  341 (571)
                      .++..+...+...|++++|..+++.+...+..++   ...+..+...+...|+++.|..+|+.+.+.. +.+..++..++
T Consensus        70 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la  148 (389)
T PRK11788         70 ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLL  148 (389)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence            3444555555555666666666655554321111   1334455555555666666666666655442 33445556666


Q ss_pred             HHHHhcCCHHHHHHHHhhCCC--CC------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 008276          342 DMYAKCGSLTEARTVFDQMRC--QD------VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA  413 (571)
Q Consensus       342 ~~~~~~~~~~~a~~~~~~~~~--~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~  413 (571)
                      ..+.+.|++++|.+.++.+.+  |+      ...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+...
T Consensus       149 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~  227 (389)
T PRK11788        149 EIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQ  227 (389)
T ss_pred             HHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHC
Confidence            666666666666666666543  11      1134567777888999999999999998842 22355777888899999


Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008276          414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIWGSLVAACCLYSNMDIGILAAD  492 (571)
Q Consensus       414 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  492 (571)
                      |++++|.++++++.+. .-......+..++.+|...|++++|.+.++++ ...|+...+..++..+.+.|++++|...++
T Consensus       228 g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~  306 (389)
T PRK11788        228 GDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLR  306 (389)
T ss_pred             CCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHH
Confidence            9999999999999864 21112356788999999999999999999988 557777777888999999999999999999


Q ss_pred             HHHhhCCCCchhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCCceE-EEECCEEEEE
Q 008276          493 HIFHLAPNQSGYYVLLSNIYAK---AGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII  550 (571)
Q Consensus       493 ~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~-~~~~~~~~~~  550 (571)
                      ++.+..|++.. +..+...+..   .|+.++|..++++|.++++.++|.+. ...+.....|
T Consensus       307 ~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c~~cg~~~~~~  367 (389)
T PRK11788        307 EQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRCRNCGFTARTL  367 (389)
T ss_pred             HHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEECCCCCCCCccc
Confidence            99999997764 4444444443   56999999999999999999999987 5565555554

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.88  E-value=3.8e-18  Score=176.60  Aligned_cols=425  Identities=11%  Similarity=-0.002  Sum_probs=278.4

Q ss_pred             hHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhHHHHHHHHHHc
Q 008276           32 DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFFNVLIRSYVNN  108 (571)
Q Consensus        32 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~  108 (571)
                      ...+..+-+.|+++.|...|.+.+ +.  .|++..|..+..+|.+.|++++|++.++...+   .+...|..+..++...
T Consensus       131 k~~G~~~~~~~~~~~Ai~~y~~al-~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l  207 (615)
T TIGR00990       131 KEKGNKAYRNKDFNKAIKLYSKAI-EC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL  207 (615)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH-hc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence            345666777777777777777766 43  34566677777777777777777777766544   2444677777777777


Q ss_pred             CChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHH
Q 008276          109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVL  188 (571)
Q Consensus       109 ~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~  188 (571)
                      |++++|+.-|......+ ..+......++..+..    ..+........+.. +.+...+..+...+ .....+....-+
T Consensus       208 g~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~  280 (615)
T TIGR00990       208 GKYADALLDLTASCIID-GFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPAGL  280 (615)
T ss_pred             CCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchhhh
Confidence            77777777766554432 1111111111111111    11222222222221 22222222222211 111111111111


Q ss_pred             ccCCCCCc---hhHHHHHHH---HHhCCCchHHHHHHHHHHHCC-CCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCC
Q 008276          189 NDMPSKDV---VTWNSMVAG---YAQNGRFDEALDVCREMESLR-IKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDN  261 (571)
Q Consensus       189 ~~~~~~~~---~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~  261 (571)
                      +...+.+.   ..+..+...   ....+++++|.+.|++..+.+ ..|+                               
T Consensus       281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~-------------------------------  329 (615)
T TIGR00990       281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEK-------------------------------  329 (615)
T ss_pred             hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChh-------------------------------
Confidence            11111111   111111111   122456777887777776643 1222                               


Q ss_pred             CChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHH
Q 008276          262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN-AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL  340 (571)
Q Consensus       262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  340 (571)
                       ....|+.+...+...|++++|+..|++..+.  .|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+
T Consensus       330 -~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l  405 (615)
T TIGR00990       330 -EAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHR  405 (615)
T ss_pred             -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence             3456778888899999999999999999875  444 5678888888899999999999999998875 5567888889


Q ss_pred             HHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCH
Q 008276          341 VDMYAKCGSLTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLL  416 (571)
Q Consensus       341 ~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~  416 (571)
                      ...+...|++++|...|+...+  | +...+..+...+.+.|++++|+..|++.++.  .| +...+..+...+...|++
T Consensus       406 g~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~  483 (615)
T TIGR00990       406 AQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKF  483 (615)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCH
Confidence            9999999999999999998875  3 5667888889999999999999999999884  45 466888899999999999


Q ss_pred             HHHHHHHHHHHHhcCCC-C---CH-HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 008276          417 EEGRYYFKIMTEQYKLV-P---RI-EHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGIL  489 (571)
Q Consensus       417 ~~a~~~~~~~~~~~~~~-~---~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~  489 (571)
                      ++|...|+...+...-. +   +. ..++.....+...|++++|.+++++. ...| +...+..+...+.+.|++++|+.
T Consensus       484 ~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~  563 (615)
T TIGR00990       484 DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALK  563 (615)
T ss_pred             HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence            99999999987641110 1   11 11222223344579999999999986 5566 45578889999999999999999


Q ss_pred             HHHHHHhhCCCCch
Q 008276          490 AADHIFHLAPNQSG  503 (571)
Q Consensus       490 ~~~~~~~~~p~~~~  503 (571)
                      .|+++.++.+....
T Consensus       564 ~~e~A~~l~~~~~e  577 (615)
T TIGR00990       564 LFERAAELARTEGE  577 (615)
T ss_pred             HHHHHHHHhccHHH
Confidence            99999998875443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.87  E-value=2.1e-19  Score=176.71  Aligned_cols=302  Identities=12%  Similarity=0.026  Sum_probs=210.3

Q ss_pred             HHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhC
Q 008276          102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN---LFNGNGLVAMYGKC  178 (571)
Q Consensus       102 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~l~~~~~~~  178 (571)
                      ...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++   ...+..+...|.+.
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~  120 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA  120 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence            344566777888888888887752 22344667777777788888888888877776432211   24567778888888


Q ss_pred             CCHHHHHHHHccCCC---CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHH
Q 008276          179 GCLKEARRVLNDMPS---KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEM  255 (571)
Q Consensus       179 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~  255 (571)
                      |++++|..+|+++.+   .+..+++.++..+.+.|++++|.+.++.+.+.+..+....                      
T Consensus       121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------  178 (389)
T PRK11788        121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------  178 (389)
T ss_pred             CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence            888888888888765   3556788888888888888888888888876543221100                      


Q ss_pred             HhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChh
Q 008276          256 FLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR  335 (571)
Q Consensus       256 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  335 (571)
                             ....+..+...+.+.|++++|..+|+++.+.. +.+...+..+...+...|++++|.++++.+.+.+......
T Consensus       179 -------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  250 (389)
T PRK11788        179 -------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSE  250 (389)
T ss_pred             -------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHH
Confidence                   01234566777788888888888888887653 2345566667777888888888888888887664333345


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-
Q 008276          336 LENALVDMYAKCGSLTEARTVFDQMRC--QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH-  412 (571)
Q Consensus       336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-  412 (571)
                      +++.++.+|...|++++|...++.+.+  |+...+..++..+.+.|++++|..+++++.+  ..|+..++..++..+.. 
T Consensus       251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~  328 (389)
T PRK11788        251 VLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAE  328 (389)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhc
Confidence            566777777788888888877777653  5555667777777778888888888877777  35777777766666553 


Q ss_pred             --CCCHHHHHHHHHHHHHhcCCCCCHH
Q 008276          413 --AGLLEEGRYYFKIMTEQYKLVPRIE  437 (571)
Q Consensus       413 --~~~~~~a~~~~~~~~~~~~~~~~~~  437 (571)
                        .|+.+++..+++.+.+. ++.|++.
T Consensus       329 ~~~g~~~~a~~~~~~~~~~-~~~~~p~  354 (389)
T PRK11788        329 AEEGRAKESLLLLRDLVGE-QLKRKPR  354 (389)
T ss_pred             cCCccchhHHHHHHHHHHH-HHhCCCC
Confidence              44777777777777765 5555554

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.87  E-value=3.8e-18  Score=175.89  Aligned_cols=230  Identities=13%  Similarity=0.001  Sum_probs=120.5

Q ss_pred             hHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 008276          266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYA  345 (571)
Q Consensus       266 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  345 (571)
                      .+..++..+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+.+....++......+..++.
T Consensus       146 a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~  223 (656)
T PRK15174        146 IFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLC  223 (656)
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence            3444444455555555555555544433211 11111111 224444555555555555444332222233333344555


Q ss_pred             hcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHH
Q 008276          346 KCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYD----AVALFSKMLMSGLCPD-SIAFVSVLSACSHAGLLE  417 (571)
Q Consensus       346 ~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~  417 (571)
                      ..|++++|...++....   .+...+..+...+...|++++    |...|++..+  ..|+ ...+..+...+...|+++
T Consensus       224 ~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~  301 (656)
T PRK15174        224 AVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNE  301 (656)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHH
Confidence            55555555555555443   234445555666666666654    5666666666  3343 335666666666666777


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERI-WGSLVAACCLYSNMDIGILAADHIF  495 (571)
Q Consensus       418 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~  495 (571)
                      +|...++++.+.  .+.+...+..+..++.+.|++++|...++++ ...|+... +..+..++...|+.++|+..|+++.
T Consensus       302 eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al  379 (656)
T PRK15174        302 KAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYI  379 (656)
T ss_pred             HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            776666666653  2233445555666666667777776666665 33444322 2333455666677777777777776


Q ss_pred             hhCCCC
Q 008276          496 HLAPNQ  501 (571)
Q Consensus       496 ~~~p~~  501 (571)
                      +..|++
T Consensus       380 ~~~P~~  385 (656)
T PRK15174        380 QARASH  385 (656)
T ss_pred             HhChhh
Confidence            666654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.86  E-value=5.2e-18  Score=178.73  Aligned_cols=406  Identities=8%  Similarity=-0.010  Sum_probs=203.6

Q ss_pred             ChhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 008276           63 NPSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKA  139 (571)
Q Consensus        63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  139 (571)
                      ++....-.+.+....|+.++|++++.....   .+...+..+...+.+.|++++|+.+|++..+.. +.+...+..+...
T Consensus        14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~   92 (765)
T PRK10049         14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILT   92 (765)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            444455566666666777777777666543   233346666666777777777777777766541 2233444555555


Q ss_pred             hhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCC--C-CchhHHHHHHHHHhCCCchHHH
Q 008276          140 CSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS--K-DVVTWNSMVAGYAQNGRFDEAL  216 (571)
Q Consensus       140 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~  216 (571)
                      +...|++++|...++++++.. +.+.. +..+..++...|+.++|+..++++.+  | +...+..+...+...|..++|+
T Consensus        93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al  170 (765)
T PRK10049         93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL  170 (765)
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence            666666666666666666552 33344 55566666666666666666666554  2 3334444555555566666666


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCC
Q 008276          217 DVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE  296 (571)
Q Consensus       217 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~  296 (571)
                      ..++....   .|+...                  ..         .......++......+.                 
T Consensus       171 ~~l~~~~~---~p~~~~------------------~l---------~~~~~~~~~r~~~~~~~-----------------  203 (765)
T PRK10049        171 GAIDDANL---TPAEKR------------------DL---------EADAAAELVRLSFMPTR-----------------  203 (765)
T ss_pred             HHHHhCCC---CHHHHH------------------HH---------HHHHHHHHHHhhccccc-----------------
Confidence            65554432   221000                  00         00011111111111100                 


Q ss_pred             CCHHHHHHHHHHhccCCch---HHHHHHHHHHHHc-CCCCChh-HH----HHHHHHHHhcCCHHHHHHHHhhCCCCC---
Q 008276          297 PNAISVASVLPACGDLSAL---LLGRKIHRYVERK-KLQPNLR-LE----NALVDMYAKCGSLTEARTVFDQMRCQD---  364 (571)
Q Consensus       297 ~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~---  364 (571)
                                   ...+++   +.|...++.+.+. ...|+.. .+    ...+.++...|++++|...|+.+.+.+   
T Consensus       204 -------------~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~  270 (765)
T PRK10049        204 -------------SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQII  270 (765)
T ss_pred             -------------ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCC
Confidence                         111112   3344444444432 1111110 00    000122334455555555555554311   


Q ss_pred             h-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcC---------
Q 008276          365 V-VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP---DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK---------  431 (571)
Q Consensus       365 ~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------  431 (571)
                      + .....+...|...|++++|+..|+++.+.....   .......+..++...|++++|..+++.+.+...         
T Consensus       271 P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~  350 (765)
T PRK10049        271 PPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSP  350 (765)
T ss_pred             CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCC
Confidence            1 111123445555666666666666555421110   012334444455556666666666665554210         


Q ss_pred             -CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 008276          432 -LVPR---IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY  505 (571)
Q Consensus       432 -~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  505 (571)
                       -.|+   ...+..++..+...|++++|+++++++ ...| +...+..+...+...|++++|++.+++++++.|++...+
T Consensus       351 ~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~  430 (765)
T PRK10049        351 TSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLE  430 (765)
T ss_pred             CCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH
Confidence             0112   123344555666666666666666665 3333 455566666666666666666666666666666666666


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276          506 VLLSNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       506 ~~l~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                      ...+..+...|++++|..+++++.+.
T Consensus       431 ~~~a~~al~~~~~~~A~~~~~~ll~~  456 (765)
T PRK10049        431 VEQAWTALDLQEWRQMDVLTDDVVAR  456 (765)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            66666666666666666666666543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.86  E-value=3.6e-18  Score=179.95  Aligned_cols=417  Identities=10%  Similarity=-0.008  Sum_probs=290.6

Q ss_pred             ccccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhHHHH
Q 008276           25 QYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFFNVL  101 (571)
Q Consensus        25 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l  101 (571)
                      +-++.-..=.+.+....|+.++|.+++.... ... +.+...+..+...+...|++++|.++|+....   .+...+..+
T Consensus        12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~-~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l   89 (765)
T PRK10049         12 ALSNNQIADWLQIALWAGQDAEVITVYNRYR-VHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL   89 (765)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3444444456777888999999999999887 422 44566789999999999999999999998543   456778889


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCH
Q 008276          102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL  181 (571)
Q Consensus       102 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~  181 (571)
                      +..+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+..++...|..
T Consensus        90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~  166 (765)
T PRK10049         90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLS  166 (765)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCh
Confidence            999999999999999999998862 33445 8788888999999999999999999875 44566667788889999999


Q ss_pred             HHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCC
Q 008276          182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDN  261 (571)
Q Consensus       182 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~  261 (571)
                      +.|+..++.... ++..... +       +...+...+....    .+                                
T Consensus       167 e~Al~~l~~~~~-~p~~~~~-l-------~~~~~~~~~r~~~----~~--------------------------------  201 (765)
T PRK10049        167 APALGAIDDANL-TPAEKRD-L-------EADAAAELVRLSF----MP--------------------------------  201 (765)
T ss_pred             HHHHHHHHhCCC-CHHHHHH-H-------HHHHHHHHHHhhc----cc--------------------------------
Confidence            999999988775 2221000 0       0001111111000    00                                


Q ss_pred             CChhhHHHHHHHHHHcCCc---hHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHhccCCchHHHHHHHHHHHHcCCC-
Q 008276          262 KNLVSWNVMIAVYANNSMP---AEAVDLYLQMEVH-GIEPNAI-SVA----SVLPACGDLSALLLGRKIHRYVERKKLQ-  331 (571)
Q Consensus       262 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~-g~~~~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-  331 (571)
                                 .....+++   ++|++.++.+.+. ...|+.. .+.    ..+..+...|++++|...|+.+.+.+.+ 
T Consensus       202 -----------~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~  270 (765)
T PRK10049        202 -----------TRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQII  270 (765)
T ss_pred             -----------ccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCC
Confidence                       00111122   5566666666543 1122211 111    1122334556777777777777665422 


Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC---------
Q 008276          332 PNLRLENALVDMYAKCGSLTEARTVFDQMRC--QD-----VVSWTSMISAYGMSGQGYDAVALFSKMLMSG---------  395 (571)
Q Consensus       332 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---------  395 (571)
                      |+. ....+..+|...|++++|...|+.+.+  |.     ......+..++...|++++|..+++++.+..         
T Consensus       271 P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~  349 (765)
T PRK10049        271 PPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGS  349 (765)
T ss_pred             CHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCC
Confidence            221 122245567777777777777777643  21     2335556667778888888888888877642         


Q ss_pred             --CCCCH---HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-H
Q 008276          396 --LCPDS---IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN-E  468 (571)
Q Consensus       396 --~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~  468 (571)
                        -.|+.   ..+..+...+...|++++|++.++++..  ..+.+...+..++..+...|++++|++.++++ ...|+ .
T Consensus       350 ~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~  427 (765)
T PRK10049        350 PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNI  427 (765)
T ss_pred             CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh
Confidence              12332   2455677788899999999999999987  44566788899999999999999999999988 66774 6


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 008276          469 RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY  505 (571)
Q Consensus       469 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  505 (571)
                      ..+...+..+...|++++|+..++++++..|+++.+.
T Consensus       428 ~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~  464 (765)
T PRK10049        428 NLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ  464 (765)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            6677777788899999999999999999999988543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.86  E-value=1.2e-17  Score=164.81  Aligned_cols=503  Identities=11%  Similarity=0.043  Sum_probs=284.9

Q ss_pred             ccccccCChhHHHHHHhhCCChHHHHHHHHHHHH-hhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHH
Q 008276           23 STQYTLLSGDACNDILDKYPDIKTLKKLHAQIII-NQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL  101 (571)
Q Consensus        23 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l  101 (571)
                      ..|++.+.+---+.+.-..+++..|+..|..++. ....+||+  ...+..++.+.|+.+.|+..|.+..+-|+..-+++
T Consensus       159 ~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~al  236 (1018)
T KOG2002|consen  159 QSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALLAFERALQLDPTCVSAL  236 (1018)
T ss_pred             hCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHHHHHHHHhcChhhHHHH
Confidence            3455555554445555556788888888887551 22334443  34455667778888888877776655333222222


Q ss_pred             HHH---HHH---cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCC--CchhHHHHHHH
Q 008276          102 IRS---YVN---NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD--YNLFNGNGLVA  173 (571)
Q Consensus       102 i~~---~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l~~  173 (571)
                      +..   -..   ...+..++.++...-... +-++...+.|.+-+.-.|+++.+..+...+......  .-...|--+.+
T Consensus       237 v~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gR  315 (1018)
T KOG2002|consen  237 VALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGR  315 (1018)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            211   111   112333444444433221 224444455555555555555555555555443211  11122344555


Q ss_pred             HHHhCCCHHHHHHHHccCCC--CCc--hhHHHHHHHHHhCCCchHHHHHHHHHHHCC-----------------------
Q 008276          174 MYGKCGCLKEARRVLNDMPS--KDV--VTWNSMVAGYAQNGRFDEALDVCREMESLR-----------------------  226 (571)
Q Consensus       174 ~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----------------------  226 (571)
                      +|-..|++++|...|-+..+  ++.  ..+--+...+.+.|+.+.+...|+...+..                       
T Consensus       316 s~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~  395 (1018)
T KOG2002|consen  316 SYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEK  395 (1018)
T ss_pred             HHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHH
Confidence            55555555555555544433  111  122334455555555555555555554421                       


Q ss_pred             --------------CCCCHHHHHHHHHHhcCCCCcc----HHHHHHHH-hhCCCCChhhHHHHHHHHHHcCCchHHHHHH
Q 008276          227 --------------IKPDADTMASLLPSVTNTSPEN----VLSVKEMF-LKLDNKNLVSWNVMIAVYANNSMPAEAVDLY  287 (571)
Q Consensus       227 --------------~~p~~~t~~~ll~~~~~~~~~~----~~~a~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  287 (571)
                                    ...|...|..+-..+-....+.    +..|.+++ ..+.+.-+...|.+...+...|++.+|...|
T Consensus       396 ~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f  475 (1018)
T KOG2002|consen  396 RDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHF  475 (1018)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHH
Confidence                          0112222222222222211111    22233222 2222344555666666666667777777766


Q ss_pred             HHHHHC---CCCCCH------HHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 008276          288 LQMEVH---GIEPNA------ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD  358 (571)
Q Consensus       288 ~~m~~~---g~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  358 (571)
                      +.....   -..+|.      .+--.+....-..++.+.|.+.|..+.+.. +--+..|..+..+....+...+|...+.
T Consensus       476 ~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk  554 (1018)
T KOG2002|consen  476 KSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLK  554 (1018)
T ss_pred             HHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHH
Confidence            665543   111222      122233444455566667777777666653 2222333333323333456667777777


Q ss_pred             hCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhc------------CCCHHHHHHH
Q 008276          359 QMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMS-GLCPDSIAFVSVLSACSH------------AGLLEEGRYY  422 (571)
Q Consensus       359 ~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~------------~~~~~~a~~~  422 (571)
                      .+..   .++..++.+...+.....+..|.+-|+...+. ...+|..+...|...|..            .+..+.|+++
T Consensus       555 ~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~  634 (1018)
T KOG2002|consen  555 DALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQL  634 (1018)
T ss_pred             HHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHH
Confidence            6653   46666777777777777777777766655543 123566665555554432            2346778888


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--
Q 008276          423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM--PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA--  498 (571)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--  498 (571)
                      |.++.+  ..+-|...-+.+.-.++..|++.+|..+|.+.  .......+|..+..+|...|++..|+++|+...+..  
T Consensus       635 y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~  712 (1018)
T KOG2002|consen  635 YGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYK  712 (1018)
T ss_pred             HHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            888776  44567777788888999999999999999988  223356788899999999999999999999988855  


Q ss_pred             CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276          499 PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       499 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                      .+++.+...|+.++.+.|++.+|.+.+....+.
T Consensus       713 ~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~  745 (1018)
T KOG2002|consen  713 KNRSEVLHYLARAWYEAGKLQEAKEALLKARHL  745 (1018)
T ss_pred             cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            567788899999999999999999888766544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.86  E-value=4.5e-18  Score=175.31  Aligned_cols=325  Identities=13%  Similarity=-0.003  Sum_probs=258.6

Q ss_pred             HHHHHHHhCCCHHHHHHHHccCCC---CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCC
Q 008276          170 GLVAMYGKCGCLKEARRVLNDMPS---KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP  246 (571)
Q Consensus       170 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~  246 (571)
                      .++..+.+.|++++|..+++....   .+...+..++.+....|++++|+..|+++...  .|+                
T Consensus        47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~----------------  108 (656)
T PRK15174         47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVC----------------  108 (656)
T ss_pred             HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCC----------------
Confidence            345556677777777777776653   24445666667777788888888888888763  343                


Q ss_pred             ccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 008276          247 ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE  326 (571)
Q Consensus       247 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  326 (571)
                                      +...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++.+.
T Consensus       109 ----------------~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~  171 (656)
T PRK15174        109 ----------------QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA  171 (656)
T ss_pred             ----------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence                            45667778889999999999999999998753 3346677888889999999999999999887


Q ss_pred             HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 008276          327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ----DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA  402 (571)
Q Consensus       327 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  402 (571)
                      ..... +...+..+ ..+...|++++|...++.+.+.    +...+..+...+...|++++|+..++++.+.. +.+...
T Consensus       172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~  248 (656)
T PRK15174        172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL  248 (656)
T ss_pred             HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence            76533 33333333 3478899999999999987652    33345556778899999999999999999853 234557


Q ss_pred             HHHHHHHhhcCCCHHH----HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 008276          403 FVSVLSACSHAGLLEE----GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVA  476 (571)
Q Consensus       403 ~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~  476 (571)
                      +..+...+...|++++    |...|+++.+.  .+.+...+..+...+...|++++|...+++. ...| +...+..+..
T Consensus       249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~  326 (656)
T PRK15174        249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR  326 (656)
T ss_pred             HHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            8888899999999986    89999999863  3446678899999999999999999999988 5566 5667788889


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008276          477 ACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK  534 (571)
Q Consensus       477 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  534 (571)
                      ++...|++++|+..++++.+.+|.+...+..++.++...|++++|...+++..+....
T Consensus       327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~  384 (656)
T PRK15174        327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS  384 (656)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence            9999999999999999999999998877777888999999999999999998766533

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.84  E-value=3.3e-16  Score=161.84  Aligned_cols=445  Identities=11%  Similarity=0.023  Sum_probs=293.0

Q ss_pred             HHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhh-HHHH--HHHHHHcCC
Q 008276           34 CNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVF-FNVL--IRSYVNNYL  110 (571)
Q Consensus        34 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~l--i~~~~~~~~  110 (571)
                      -+-+..+.|+++.|...+.+.. +..+.-.+.++ .++..+...|+.++|+..+++...|+... +..+  ...+...|+
T Consensus        40 ~aii~~r~Gd~~~Al~~L~qaL-~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gd  117 (822)
T PRK14574         40 SLIIRARAGDTAPVLDYLQEES-KAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKR  117 (822)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHH-hhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence            3444567777777777777777 54433212333 67777777788888888777776653333 3333  346666678


Q ss_pred             hhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHcc
Q 008276          111 YYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLND  190 (571)
Q Consensus       111 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  190 (571)
                      +++|+++|+++.+.. +-++..+..++..+...++.++|++.++.+...  .|+...+..++..+...++..+|++.+++
T Consensus       118 yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek  194 (822)
T PRK14574        118 WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE  194 (822)
T ss_pred             HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            888888888777652 223455556666677777777777777777654  34444444444444445566557777777


Q ss_pred             CCC--C-CchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhH
Q 008276          191 MPS--K-DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSW  267 (571)
Q Consensus       191 ~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  267 (571)
                      +.+  | +...+..+..++.+.|-...|+++..+-... +.+.  ....+-          .+.+.+..+....++..- 
T Consensus       195 ll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~--~~~~l~----------~~~~a~~vr~a~~~~~~~-  260 (822)
T PRK14574        195 AVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAE--HYRQLE----------RDAAAEQVRMAVLPTRSE-  260 (822)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHH--HHHHHH----------HHHHHHHHhhcccccccc-
Confidence            764  3 4455666777777777777777665542110 1111  111100          111222221111000000 


Q ss_pred             HHHHHHHHHcCCchHHHHHHHHHHHC-CCCCCH-H----HHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 008276          268 NVMIAVYANNSMPAEAVDLYLQMEVH-GIEPNA-I----SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV  341 (571)
Q Consensus       268 ~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~~~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  341 (571)
                         -.   +---.+.|+.-++.+... +..|.. .    ...-.+.++...++..++++.|+.+...+.+....+-..+.
T Consensus       261 ---~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a  334 (822)
T PRK14574        261 ---TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA  334 (822)
T ss_pred             ---hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence               00   000235566666666542 222322 1    22234556788899999999999999888665666778899


Q ss_pred             HHHHhcCCHHHHHHHHhhCCCC---------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CCCH-
Q 008276          342 DMYAKCGSLTEARTVFDQMRCQ---------DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL-----------CPDS-  400 (571)
Q Consensus       342 ~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----------~p~~-  400 (571)
                      ++|...+++++|..+|+.+..+         +......|.-+|...+++++|..+++++.+.-.           .||. 
T Consensus       335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d  414 (822)
T PRK14574        335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD  414 (822)
T ss_pred             HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence            9999999999999999987542         223356788899999999999999999987311           1332 


Q ss_pred             -H-HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 008276          401 -I-AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVA  476 (571)
Q Consensus       401 -~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~  476 (571)
                       . .+..++..+...|++.+|++.++.+..  .-+-|......+...+...|.+.+|++.++.. ...| +..+....+.
T Consensus       415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~  492 (822)
T PRK14574        415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAE  492 (822)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHH
Confidence             2 345567778899999999999999976  55678888999999999999999999999877 5567 5567777888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 008276          477 ACCLYSNMDIGILAADHIFHLAPNQSGYY  505 (571)
Q Consensus       477 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  505 (571)
                      ++...+++++|..+.+.+.+..|+++.+-
T Consensus       493 ~al~l~e~~~A~~~~~~l~~~~Pe~~~~~  521 (822)
T PRK14574        493 TAMALQEWHQMELLTDDVISRSPEDIPSQ  521 (822)
T ss_pred             HHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence            88899999999999999999999988543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.81  E-value=1.1e-15  Score=151.28  Aligned_cols=461  Identities=15%  Similarity=0.087  Sum_probs=322.2

Q ss_pred             CChhHHHHHHHHhhcCCChHHHHHHHcccCCCC------hhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCccc--H
Q 008276           62 SNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN------VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYT--Y  133 (571)
Q Consensus        62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~--~  133 (571)
                      .+|.+.+.|.+.|...|+++.+..+...+...+      ..+|..+.++|-..|++++|...|.+..+.  .|+.+.  +
T Consensus       268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~  345 (1018)
T KOG2002|consen  268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPL  345 (1018)
T ss_pred             CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccc
Confidence            356666777777777777777777766554321      234666777777777777777777776654  344433  3


Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC----CHHHHHHHHccCCCC---CchhHHHHHHHH
Q 008276          134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG----CLKEARRVLNDMPSK---DVVTWNSMVAGY  206 (571)
Q Consensus       134 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~li~~~  206 (571)
                      .-+...+.+.|+++.+...|+.+.+.. +.+..+...|...|...+    ..+.|..++....++   |...|-.+...+
T Consensus       346 ~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~  424 (1018)
T KOG2002|consen  346 VGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL  424 (1018)
T ss_pred             cchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            445566777777777777777777653 444556666666666554    455666666655543   445565555555


Q ss_pred             HhCCCchHHHHHHHHHH----HCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCC-------CCh------hhHHH
Q 008276          207 AQNGRFDEALDVCREME----SLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDN-------KNL------VSWNV  269 (571)
Q Consensus       207 ~~~g~~~~a~~~~~~m~----~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~-------~~~------~~~~~  269 (571)
                      ... +...++.+|....    ..+-.+.....|.+-......|.  ++.|...|+....       ++.      ..-..
T Consensus       425 e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~--~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN  501 (1018)
T KOG2002|consen  425 EQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGN--IEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN  501 (1018)
T ss_pred             Hhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcC--hHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence            544 4444476665543    45555777777777777777776  7777776665431       222      12334


Q ss_pred             HHHHHHHcCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 008276          270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAI-SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG  348 (571)
Q Consensus       270 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  348 (571)
                      +...+-..++++.|.+.|..+.+.  .|+-. .|..+.......+...+|...++.+...+ ..++..++.+...+.+..
T Consensus       502 larl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~  578 (1018)
T KOG2002|consen  502 LARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKS  578 (1018)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhh
Confidence            566677788999999999999875  45543 34444433445578888999999888764 556666666777888888


Q ss_pred             CHHHHHHHHhhCCC-----CChhHHHHHHHHHHh------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 008276          349 SLTEARTVFDQMRC-----QDVVSWTSMISAYGM------------SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS  411 (571)
Q Consensus       349 ~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~------------~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~  411 (571)
                      ++..|.+-|+.+.+     +|+.+.-.|...|.+            .+..++|+++|.+.+... +-|...-+.+.-.++
T Consensus       579 ~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA  657 (1018)
T KOG2002|consen  579 EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLA  657 (1018)
T ss_pred             hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhh
Confidence            88888886655542     455555555554432            345788999999998852 336677788888899


Q ss_pred             cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHH
Q 008276          412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM----PMEPNERIWGSLVAACCLYSNMDIG  487 (571)
Q Consensus       412 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A  487 (571)
                      ..|++..|..+|....+..  .....+|-.+..+|..+|++-.|+++|+..    ..+.+......|.+++.+.|++.+|
T Consensus       658 ~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea  735 (1018)
T KOG2002|consen  658 EKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA  735 (1018)
T ss_pred             hccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence            9999999999999999862  345567888999999999999999999977    3345788899999999999999999


Q ss_pred             HHHHHHHHhhCCCCchhHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCC
Q 008276          488 ILAADHIFHLAPNQSGYYVLLSNIYAKA-------------------GRWGDVKRVRKFMNSKGIK  534 (571)
Q Consensus       488 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~m~~~~~~  534 (571)
                      ...+..+....|.++...+.++.+..+.                   +..+.|.++|.+|...+-.
T Consensus       736 k~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~  801 (1018)
T KOG2002|consen  736 KEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK  801 (1018)
T ss_pred             HHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999998877776655443                   4567788888888776543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.80  E-value=4e-15  Score=153.91  Aligned_cols=398  Identities=10%  Similarity=-0.008  Sum_probs=289.7

Q ss_pred             hhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC--C-ChhhHHHHHHHHHH
Q 008276           31 GDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN--K-NVVFFNVLIRSYVN  107 (571)
Q Consensus        31 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~  107 (571)
                      ..-++.++...|+.++|...+++.. ... +........+...|...|++++|+++|+.+.+  | |+..+..++..+..
T Consensus        71 v~dll~l~~~~G~~~~A~~~~eka~-~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~  148 (822)
T PRK14574         71 VDDWLQIAGWAGRDQEVIDVYERYQ-SSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQAD  148 (822)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHhc-cCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Confidence            3377888888899999999999876 221 12233334446788899999999999999875  3 56677788899999


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHH
Q 008276          108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV  187 (571)
Q Consensus       108 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~  187 (571)
                      .++.++|++.++++...  .|+...+..++..+...++..+|++.++++.+.. +.+...+..+..++.+.|-...|.++
T Consensus       149 ~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l  225 (822)
T PRK14574        149 AGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRL  225 (822)
T ss_pred             cCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence            99999999999999875  5676666555455555667767999999999985 55778888899999999999999999


Q ss_pred             HccCCCC-CchhHH----HHHHHHHhCCC------------chHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHH
Q 008276          188 LNDMPSK-DVVTWN----SMVAGYAQNGR------------FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVL  250 (571)
Q Consensus       188 ~~~~~~~-~~~~~~----~li~~~~~~g~------------~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~  250 (571)
                      ..+-+.- +...+.    ..+.-.++.+.            .+.|+.-++.+                            
T Consensus       226 ~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l----------------------------  277 (822)
T PRK14574        226 AKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL----------------------------  277 (822)
T ss_pred             HHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH----------------------------
Confidence            8876531 111111    11111121110            11122222222                            


Q ss_pred             HHHHHHhhCCC-CCh-----hhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHH
Q 008276          251 SVKEMFLKLDN-KNL-----VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRY  324 (571)
Q Consensus       251 ~a~~~~~~~~~-~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  324 (571)
                           +..... |..     ....-.+-++...|++.++++.|+.+...|.+....+-..+..+|...+.+++|..+++.
T Consensus       278 -----~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~  352 (822)
T PRK14574        278 -----LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS  352 (822)
T ss_pred             -----HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence                 211111 111     112234567888999999999999999888776677888999999999999999999999


Q ss_pred             HHHcC-----CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-------------Ch---hHHHHHHHHHHhcCCh
Q 008276          325 VERKK-----LQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--Q-------------DV---VSWTSMISAYGMSGQG  381 (571)
Q Consensus       325 ~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-------------~~---~~~~~li~~~~~~~~~  381 (571)
                      +....     .+++......|..+|...+++++|..+++.+.+  |             |.   ..+..++..+...|+.
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl  432 (822)
T PRK14574        353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL  432 (822)
T ss_pred             HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence            87643     123344457888999999999999999998864  2             11   1245567788999999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 008276          382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ  461 (571)
Q Consensus       382 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  461 (571)
                      .+|++.++++... -+-|......+...+...|.+.+|...++....  -.+-+..+....+.++...|++++|..+.+.
T Consensus       433 ~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~  509 (822)
T PRK14574        433 PTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLTDD  509 (822)
T ss_pred             HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            9999999999884 334677888899999999999999999977764  2233456777888999999999999999877


Q ss_pred             C-CCCCCHH
Q 008276          462 M-PMEPNER  469 (571)
Q Consensus       462 ~-~~~p~~~  469 (571)
                      + ...|+..
T Consensus       510 l~~~~Pe~~  518 (822)
T PRK14574        510 VISRSPEDI  518 (822)
T ss_pred             HHhhCCCch
Confidence            7 4445443

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.80  E-value=1.1e-14  Score=131.22  Aligned_cols=422  Identities=13%  Similarity=0.128  Sum_probs=216.6

Q ss_pred             ccccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCC--ChHHH-HHHH--------------
Q 008276           25 QYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACG--QMVDT-RHVF--------------   87 (571)
Q Consensus        25 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A-~~~~--------------   87 (571)
                      +..+.+-+.|+++ .+.|.+.++.-++..|. +.|.+.++.+...|++.-+..+  ++--| .+.|              
T Consensus       113 ~~~V~~E~nL~km-IS~~EvKDs~ilY~~m~-~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW  190 (625)
T KOG4422|consen  113 PLQVETENNLLKM-ISSREVKDSCILYERMR-SENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW  190 (625)
T ss_pred             chhhcchhHHHHH-HhhcccchhHHHHHHHH-hcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc
Confidence            3344556666664 45688889999999999 8998888888877776544322  11111 1122              


Q ss_pred             ---------cccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHH
Q 008276           88 ---------DEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVK  158 (571)
Q Consensus        88 ---------~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  158 (571)
                               -+.......+|..+|.++++-...++|.++|++......+.+..+||.+|.+-.-    ...++++.+|..
T Consensus       191 K~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMis  266 (625)
T KOG4422|consen  191 KSGAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMIS  266 (625)
T ss_pred             ccccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHH
Confidence                     2222235567888888888888888888888888777777888888888876432    233778888888


Q ss_pred             hCCCCchhHHHHHHHHHHhCCCHHHHHHHH----ccCC----CCCchhHHHHHHHHHhCCCchH-HHHHHHHHHH----C
Q 008276          159 VGLDYNLFNGNGLVAMYGKCGCLKEARRVL----NDMP----SKDVVTWNSMVAGYAQNGRFDE-ALDVCREMES----L  225 (571)
Q Consensus       159 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~~~----~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~  225 (571)
                      ....||..|+|+++.+..+.|+++.|.+.+    .+|+    +|...+|..+|..+++.++..+ +..++.+...    +
T Consensus       267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK  346 (625)
T KOG4422|consen  267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGK  346 (625)
T ss_pred             hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccC
Confidence            888888888888888888888777665432    2222    2444555555555555444322 2223332222    1


Q ss_pred             CCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCC----CCCCH--
Q 008276          226 RIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG----IEPNA--  299 (571)
Q Consensus       226 g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g----~~~~~--  299 (571)
                      .++|-                             .+.|...|..-+..|.+..+.+.|.++-.-+....    +.|+.  
T Consensus       347 ~fkp~-----------------------------~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~  397 (625)
T KOG4422|consen  347 TFKPI-----------------------------TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHR  397 (625)
T ss_pred             cccCC-----------------------------CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHH
Confidence            11110                             01122333344444444444444444433222110    11111  


Q ss_pred             -HHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhc
Q 008276          300 -ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS  378 (571)
Q Consensus       300 -~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~  378 (571)
                       .-|..+....+.....+.....|+.|.-.-+-|+..+...++++..-.+.++-..+++..+..            |...
T Consensus       398 ~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~------------~ght  465 (625)
T KOG4422|consen  398 NFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE------------YGHT  465 (625)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH------------hhhh
Confidence             223333333344444444444444444444444444444444444444444444444443321            1111


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHhhcCCCHHHHH-HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008276          379 GQGYDAVALFSKMLMSGLCPDSI---AFVSVLSACSHAGLLEEGR-YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE  454 (571)
Q Consensus       379 ~~~~~a~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  454 (571)
                      -+-+--++++..|......|+..   -+.....-|..  ++.++. ..-.++.   .........+..+-.+.+.|+.++
T Consensus       466 ~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa--d~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qk  540 (625)
T KOG4422|consen  466 FRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAA--DIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQK  540 (625)
T ss_pred             hhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH--HHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHH
Confidence            11122223333333332333222   11111111110  111111 1112222   222334445666666777777777


Q ss_pred             HHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 008276          455 AYDLIKQM-------PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA  498 (571)
Q Consensus       455 A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  498 (571)
                      |.++|.-+       +..|.......++....+.++...|...++-+...+
T Consensus       541 A~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n  591 (625)
T KOG4422|consen  541 AWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN  591 (625)
T ss_pred             HHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence            77766544       233444444455566666777777777777775544

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.78  E-value=3.7e-14  Score=127.92  Aligned_cols=510  Identities=14%  Similarity=0.111  Sum_probs=339.1

Q ss_pred             eeccccCCCcchhhhhhcccccc-CChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCCh--HH
Q 008276            6 LLCRHFSTTKPVQALVLSTQYTL-LSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQM--VD   82 (571)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~   82 (571)
                      -..||..+..|....-+.+||.. .+..-|+++++..--.+.....|..+- ..-.-|.+   ++-=+.|.-...+  ..
T Consensus         6 ~~~~~~ss~~PA~~~~l~I~~~IERSPTDLL~ALs~TV~~D~TAPH~~Y~D-DP~~IP~t---~stKkTY~MaKE~GkrA   81 (625)
T KOG4422|consen    6 VITRSLSSVEPALSQKLTIQPAIERSPTDLLNALSETVGPDTTAPHFAYID-DPITIPST---QSTKKTYFMAKEFGKRA   81 (625)
T ss_pred             ccchhccccCccccCCccCCchhccChHHHHHHHHHhhCCCCCCcchhccC-CCcccccc---hhHHHHHHHHHHHhHHH
Confidence            34566677777766666666543 455667777776644443333444332 11111121   2222222211111  22


Q ss_pred             HHHHHcccCC---------------------C-ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHh
Q 008276           83 TRHVFDEITN---------------------K-NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKAC  140 (571)
Q Consensus        83 A~~~~~~~~~---------------------~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~  140 (571)
                      |+.+-.+.+.                     | .+.+-|.|+. +...|...++.-+|+.|...|++.+...-..|++..
T Consensus        82 Ar~l~~E~~~LF~~~~~QP~l~~F~P~~l~~~~~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV  160 (625)
T KOG4422|consen   82 ARELATEWPTLFAFDRDQPQLPVFRPRHLADPLQVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLV  160 (625)
T ss_pred             HHHHHHhchHhhhccccCccccccCchhcCCchhhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            3333222211                     2 2335556655 455678888889999999998877776665555543


Q ss_pred             h--cCCChHHH-HHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHH
Q 008276          141 S--GSNSLLVG-LQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD  217 (571)
Q Consensus       141 ~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  217 (571)
                      +  ...++.-+ .+.|-.|...| ..+..+|        +.|++.+   ++-+...+...+|..||.++++-...+.|.+
T Consensus       161 ~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~  228 (625)
T KOG4422|consen  161 TYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARE  228 (625)
T ss_pred             HhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHH
Confidence            2  23333222 23333444433 2233333        3455444   4444445667899999999999999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchH----HHHHHHHHHHC
Q 008276          218 VCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAE----AVDLYLQMEVH  293 (571)
Q Consensus       218 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~m~~~  293 (571)
                      +|++......+.+..+||.+|.+.+-..+  -+...++...-..||..++|+++.+..+-|+++.    |++++.+|++-
T Consensus       229 L~kE~~~~k~kv~~~aFN~lI~~~S~~~~--K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKei  306 (625)
T KOG4422|consen  229 LYKEHRAAKGKVYREAFNGLIGASSYSVG--KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEI  306 (625)
T ss_pred             HHHHHHHhhheeeHHhhhhhhhHHHhhcc--HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence            99999999899999999999998776655  5566667777778999999999999999998765    56888999999


Q ss_pred             CCCCCHHHHHHHHHHhccCCchHH-HHHHHHHHHH----cCCC----CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 008276          294 GIEPNAISVASVLPACGDLSALLL-GRKIHRYVER----KKLQ----PNLRLENALVDMYAKCGSLTEARTVFDQMRC--  362 (571)
Q Consensus       294 g~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--  362 (571)
                      |+.|...+|..+|..+.+.++..+ +..+..++..    ..++    .+...|...+..|....+.+-|.++-.-+..  
T Consensus       307 GVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~  386 (625)
T KOG4422|consen  307 GVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD  386 (625)
T ss_pred             CCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence            999999999999999988887644 3444444432    2222    2445666778888888898888887665542  


Q ss_pred             ------CC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 008276          363 ------QD---VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV  433 (571)
Q Consensus       363 ------~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  433 (571)
                            ++   ..-|..+....|+....+.-...|+.|.-.-+-|+..+...++++....+.++-.-++|..++.. |..
T Consensus       387 N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~-ght  465 (625)
T KOG4422|consen  387 NWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY-GHT  465 (625)
T ss_pred             chhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh-hhh
Confidence                  22   23466778888899999999999999998878899999999999999999999999999988775 544


Q ss_pred             CCHHHHHHHHHHHHhcC-CH--------HH-----HHHHHHh-------C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008276          434 PRIEHFACLVDLLGRAG-KV--------EE-----AYDLIKQ-------M-PMEPNERIWGSLVAACCLYSNMDIGILAA  491 (571)
Q Consensus       434 ~~~~~~~~l~~~~~~~g-~~--------~~-----A~~~~~~-------~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  491 (571)
                      -+.....-+...+++.. ..        ..     |..+++.       + ..+-.....+..+-.+.+.|..++|.+++
T Consensus       466 ~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l  545 (625)
T KOG4422|consen  466 FRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEML  545 (625)
T ss_pred             hhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHH
Confidence            44444444455555443 11        11     1112211       1 22334556677777788999999999999


Q ss_pred             HHHHhhC---CCCch--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008276          492 DHIFHLA---PNQSG--YYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKK  535 (571)
Q Consensus       492 ~~~~~~~---p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~  535 (571)
                      .-..+..   |..+.  +..-+.+.-........|..+++-|...+...
T Consensus       546 ~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~  594 (625)
T KOG4422|consen  546 GLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI  594 (625)
T ss_pred             HHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence            9886543   44433  34456666677888899999999997766543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.77  E-value=2.6e-16  Score=142.63  Aligned_cols=468  Identities=13%  Similarity=0.084  Sum_probs=311.2

Q ss_pred             eccccCCCcchhhhhhccccccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHH-HHHHHHhhcCCChHHHHH
Q 008276            7 LCRHFSTTKPVQALVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIG-LKLMRTYGACGQMVDTRH   85 (571)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~   85 (571)
                      +-+|..+-....-+++..  |....-.|++.|....-..+|+..++.+. +...-|+.... ..+.+.+.+...+.+|++
T Consensus       182 lvk~req~~~~e~inldl--tfsvl~nlaqqy~~ndm~~ealntyeiiv-knkmf~nag~lkmnigni~~kkr~fskaik  258 (840)
T KOG2003|consen  182 LVKHREQQGLPEMINLDL--TFSVLFNLAQQYEANDMTAEALNTYEIIV-KNKMFPNAGILKMNIGNIHFKKREFSKAIK  258 (840)
T ss_pred             HHHHHHhccchhhccccc--hHHHHHHHHHHhhhhHHHHHHhhhhhhhh-cccccCCCceeeeeecceeeehhhHHHHHH
Confidence            334444433333333332  23344557777777788899999999888 66666666544 356778888899999999


Q ss_pred             HHcccCC--C--C----hhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHH
Q 008276           86 VFDEITN--K--N----VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV  157 (571)
Q Consensus        86 ~~~~~~~--~--~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~  157 (571)
                      .++-...  |  +    ....+.+.-.+.+.|+++.|+..|+...+.  .|+-.+-..|+-++..-|+-++..+.|..|+
T Consensus       259 fyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli  336 (840)
T KOG2003|consen  259 FYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLI  336 (840)
T ss_pred             HHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHh
Confidence            8865433  2  2    224555556788999999999999987764  4776665555555666788899999999887


Q ss_pred             HhCC------------CCchhHHHHHH-----HHHHhCCC--HHHHH----HHHccCCCCCchh---H----------HH
Q 008276          158 KVGL------------DYNLFNGNGLV-----AMYGKCGC--LKEAR----RVLNDMPSKDVVT---W----------NS  201 (571)
Q Consensus       158 ~~g~------------~~~~~~~~~l~-----~~~~~~g~--~~~A~----~~~~~~~~~~~~~---~----------~~  201 (571)
                      ..-.            .|+....+.-+     .-+-+.++  -++++    ++..-+..|+-..   |          ..
T Consensus       337 ~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~  416 (840)
T KOG2003|consen  337 DIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAE  416 (840)
T ss_pred             cCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhh
Confidence            6432            22222222221     11222111  11221    1111222222110   0          00


Q ss_pred             --------HHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHH-
Q 008276          202 --------MVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIA-  272 (571)
Q Consensus       202 --------li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~-  272 (571)
                              -..-+.++|+++.|++++.-..+..-+.-.                                 .+-+.|-. 
T Consensus       417 la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~s---------------------------------aaa~nl~~l  463 (840)
T KOG2003|consen  417 LAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTAS---------------------------------AAANNLCAL  463 (840)
T ss_pred             hhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhH---------------------------------HHhhhhHHH
Confidence                    112345566666666666555443211110                                 11112211 


Q ss_pred             HHHH-cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 008276          273 VYAN-NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLT  351 (571)
Q Consensus       273 ~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  351 (571)
                      -|.+ -.++..|.++-+..+... +-+......-.+.....|++++|...|++.+..+-......||. .-.+-..|+++
T Consensus       464 ~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ld  541 (840)
T KOG2003|consen  464 RFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLD  541 (840)
T ss_pred             HHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHH
Confidence            2222 235666766666655332 33333333333445567899999999999887654444445553 33467789999


Q ss_pred             HHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276          352 EARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE  428 (571)
Q Consensus       352 ~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  428 (571)
                      +|++.|-.+..   .+....-.+...|-...+...|++++.+.... ++.|+.....|...|-+.|+-.+|.+++-.--+
T Consensus       542 eald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr  620 (840)
T KOG2003|consen  542 EALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR  620 (840)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc
Confidence            99999877653   67777888888999999999999999887774 555677899999999999999999987655443


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCCchhHH
Q 008276          429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIWGSLVAACC-LYSNMDIGILAADHIFHLAPNQSGYYV  506 (571)
Q Consensus       429 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~  506 (571)
                        -++-+..+..-|...|....-+++|+.+|++. -+.|+..-|..++..|. +.|++++|..+|+...+..|.+.....
T Consensus       621 --yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclk  698 (840)
T KOG2003|consen  621 --YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLK  698 (840)
T ss_pred             --ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHH
Confidence              55677888888999999999999999999998 67899999999988876 599999999999999999999999999


Q ss_pred             HHHHHHHhcCC
Q 008276          507 LLSNIYAKAGR  517 (571)
Q Consensus       507 ~l~~~~~~~g~  517 (571)
                      .|+..+...|-
T Consensus       699 flvri~~dlgl  709 (840)
T KOG2003|consen  699 FLVRIAGDLGL  709 (840)
T ss_pred             HHHHHhccccc
Confidence            99998888774

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.73  E-value=3.9e-12  Score=121.05  Aligned_cols=484  Identities=11%  Similarity=0.028  Sum_probs=252.8

Q ss_pred             ccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhHHHHHH
Q 008276           27 TLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFFNVLIR  103 (571)
Q Consensus        27 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~  103 (571)
                      .+-+......+-.-..+...-.+++...+ + .+|.+...|..    .......++|+-++.+..+   .+...|    -
T Consensus       345 ~P~Sv~lW~kA~dLE~~~~~K~RVlRKAL-e-~iP~sv~LWKa----AVelE~~~darilL~rAveccp~s~dLw----l  414 (913)
T KOG0495|consen  345 LPTSVRLWLKAADLESDTKNKKRVLRKAL-E-HIPRSVRLWKA----AVELEEPEDARILLERAVECCPQSMDLW----L  414 (913)
T ss_pred             CCCChhhhhhHHhhhhHHHHHHHHHHHHH-H-hCCchHHHHHH----HHhccChHHHHHHHHHHHHhccchHHHH----H
Confidence            33444444444444444555555555554 2 23333333332    2233334445555544433   122222    3


Q ss_pred             HHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHH----HhCCCCchhHHHHHHH------
Q 008276          104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVV----KVGLDYNLFNGNGLVA------  173 (571)
Q Consensus       104 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~l~~------  173 (571)
                      +|++...|+.|..++++..+. ++.+...|.+....--..|+.+.+..+.++-+    ..|+..+...|-.=..      
T Consensus       415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag  493 (913)
T KOG0495|consen  415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG  493 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence            344444555555555555543 44444555444444444555555544443322    2344444444444444      


Q ss_pred             -------------------------------HHHhCCCHHHHHHHHccCCC---CCchhHHHHHHHHHhCCCchHHHHHH
Q 008276          174 -------------------------------MYGKCGCLKEARRVLNDMPS---KDVVTWNSMVAGYAQNGRFDEALDVC  219 (571)
Q Consensus       174 -------------------------------~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~  219 (571)
                                                     .|.+.+.++-|..+|....+   .+...|...+..--..|..++...+|
T Consensus       494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~All  573 (913)
T KOG0495|consen  494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALL  573 (913)
T ss_pred             ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence                                           44444444444444443332   12333444443334444445555555


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCC---CCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCC
Q 008276          220 REMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLD---NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE  296 (571)
Q Consensus       220 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~  296 (571)
                      ++....- +-....|.......-..|+  +..++.++....   +.+...|-+-+.......++++|..+|.+...  ..
T Consensus       574 qkav~~~-pkae~lwlM~ake~w~agd--v~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~s  648 (913)
T KOG0495|consen  574 QKAVEQC-PKAEILWLMYAKEKWKAGD--VPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--IS  648 (913)
T ss_pred             HHHHHhC-CcchhHHHHHHHHHHhcCC--cHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cC
Confidence            5444421 1111112111222222222  444444444333   12334455555555555555566555555544  23


Q ss_pred             CCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHH
Q 008276          297 PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--Q-DVVSWTSMIS  373 (571)
Q Consensus       297 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~  373 (571)
                      |+...|..-+..-.-.+..++|.+++++.++.- +.-...|..+.+.+-+.++++.|.+.|..-.+  | .+..|-.|..
T Consensus       649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak  727 (913)
T KOG0495|consen  649 GTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK  727 (913)
T ss_pred             CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence            444444444444444555555665555555432 22334455555555555566666555555443  3 2334555555


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 008276          374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE  453 (571)
Q Consensus       374 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  453 (571)
                      .--+.|..-.|..++++.+-.+ +-|...|...++.-.+.|+.+.|..++.+..+  ..+.+...|.--|.+..+.++-.
T Consensus       728 leEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkT  804 (913)
T KOG0495|consen  728 LEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKT  804 (913)
T ss_pred             HHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccch
Confidence            5555555666666666555532 22444555556665666666666666555554  33444455555555555555555


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          454 EAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       454 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      ...+.+++.  +-|+.....+...+....+++.|.+-|.++.+.+|++..+|..+...+.+.|.-++-.++++......
T Consensus       805 ks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E  881 (913)
T KOG0495|consen  805 KSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE  881 (913)
T ss_pred             HHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence            555555554  34566667777788888999999999999999999999999999999999999999999999887654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.72  E-value=4.2e-12  Score=125.54  Aligned_cols=492  Identities=13%  Similarity=0.021  Sum_probs=331.9

Q ss_pred             HHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHccc---CCCChhhHHHHHHHHHHcC
Q 008276           33 ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEI---TNKNVVFFNVLIRSYVNNY  109 (571)
Q Consensus        33 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~  109 (571)
                      ..++.+--.|++++|..++..++ +.. +.....|..|...|-..|+.+++...+-..   ...|...|-.+.....+.|
T Consensus       144 ~eAN~lfarg~~eeA~~i~~EvI-kqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~  221 (895)
T KOG2076|consen  144 GEANNLFARGDLEEAEEILMEVI-KQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG  221 (895)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHH-HhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence            34455555599999999999999 555 558889999999999999999999887544   3457788999999999999


Q ss_pred             ChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHH----HHHHHHHHhCCCHHHHH
Q 008276          110 LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG----NGLVAMYGKCGCLKEAR  185 (571)
Q Consensus       110 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----~~l~~~~~~~g~~~~A~  185 (571)
                      ++++|.-.|.+..+.. +++...+---...|-+.|+...|..-+.++.....+.|..-.    -..+..+...++-+.|.
T Consensus       222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~  300 (895)
T KOG2076|consen  222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA  300 (895)
T ss_pred             cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            9999999999999863 334444444556678999999999999999887532232222    33456677788889999


Q ss_pred             HHHccCCC-----CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHH--------------------------
Q 008276          186 RVLNDMPS-----KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTM--------------------------  234 (571)
Q Consensus       186 ~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--------------------------  234 (571)
                      +.++....     -+...++.++..+.+...++.+......+......+|..-+                          
T Consensus       301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v  380 (895)
T KOG2076|consen  301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV  380 (895)
T ss_pred             HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence            99887765     24567899999999999999999998888763222222221                          


Q ss_pred             HHHHHHhcCCCCccHHHHHHHHhhC----CCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 008276          235 ASLLPSVTNTSPENVLSVKEMFLKL----DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG  310 (571)
Q Consensus       235 ~~ll~~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~  310 (571)
                      ..+.-++.+........+..-+...    ...+...|.-+.++|...|++.+|+.+|..+.....--+...|..+..++.
T Consensus       381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~  460 (895)
T KOG2076|consen  381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM  460 (895)
T ss_pred             HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence            1111222233322222222222111    123556788899999999999999999999987655556778999999999


Q ss_pred             cCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh------------hHHHHHHHHHHhc
Q 008276          311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV------------VSWTSMISAYGMS  378 (571)
Q Consensus       311 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~li~~~~~~  378 (571)
                      ..|..+.|...|+.++... +.+...-..|...+.+.|+.++|.+.++.+..||.            .......+.+.+.
T Consensus       461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~  539 (895)
T KOG2076|consen  461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV  539 (895)
T ss_pred             HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence            9999999999999999875 55666777888999999999999999999876552            2223344566777


Q ss_pred             CChHHHHHHHHHHHHCC----------------------CCCCHHHHHHHHHHhhcCCCHHHHHHHHHHH-----HHhcC
Q 008276          379 GQGYDAVALFSKMLMSG----------------------LCPDSIAFVSVLSACSHAGLLEEGRYYFKIM-----TEQYK  431 (571)
Q Consensus       379 ~~~~~a~~~~~~m~~~g----------------------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~~  431 (571)
                      |+.++=+.+...|+...                      ..-.......++.+-.+.++..........-     ....+
T Consensus       540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~  619 (895)
T KOG2076|consen  540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG  619 (895)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc
Confidence            88777555544443311                      1112223333344444444432222221111     11112


Q ss_pred             CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHH---HH-HHHHHHHHhcCCHHHHHHHHHHHHhh----
Q 008276          432 LVPRI--EHFACLVDLLGRAGKVEEAYDLIKQM----PMEPNER---IW-GSLVAACCLYSNMDIGILAADHIFHL----  497 (571)
Q Consensus       432 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~---~~-~~l~~~~~~~g~~~~A~~~~~~~~~~----  497 (571)
                      +..+.  ..+.-++..+.+.+++++|+.+...+    .+..+..   .+ ...+.++...+++..|...++.++..    
T Consensus       620 Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~  699 (895)
T KOG2076|consen  620 LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFY  699 (895)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh
Confidence            22222  34556777888899999999888766    1111222   22 33455566788999999988888876    


Q ss_pred             -CCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276          498 -APNQSGYYVLLSNIYAKAGRWGDVKRVRKFM  528 (571)
Q Consensus       498 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  528 (571)
                       +|.....|+.......+.|+-.-=.+.+...
T Consensus       700 ~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~  731 (895)
T KOG2076|consen  700 LDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRL  731 (895)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             5655556665555555555544444444443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=8.4e-14  Score=127.85  Aligned_cols=403  Identities=14%  Similarity=0.071  Sum_probs=270.5

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-cccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHH
Q 008276           98 FNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD-CYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN-LFNGNGLVAMY  175 (571)
Q Consensus        98 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~  175 (571)
                      +-....-|.++|++++|++.|.+..+.  .|| +..|.....+|...|+|+++.+--...++.  .|+ ...+..-..++
T Consensus       118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~  193 (606)
T KOG0547|consen  118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH  193 (606)
T ss_pred             HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence            444556788999999999999999985  688 677777788888999999999888877765  344 44566667788


Q ss_pred             HhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHH---------HHHC--CCCCCHHHHHHHHHHhcCC
Q 008276          176 GKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE---------MESL--RIKPDADTMASLLPSVTNT  244 (571)
Q Consensus       176 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~---------m~~~--g~~p~~~t~~~ll~~~~~~  244 (571)
                      -..|++++|+.=+         +-.++...+....-.--+.+++.+         |.+.  .+-|+.....+.+..+...
T Consensus       194 E~lg~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~  264 (606)
T KOG0547|consen  194 EQLGKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD  264 (606)
T ss_pred             HhhccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence            8888888876521         112222222222211222222221         1111  2335554444444443221


Q ss_pred             CCccHHHHHHHHhhCCCCChhhHHHHHHHHHH--c---CCchHHHHHHHHHHHCC-CC-----CCHH----HHHHHHH--
Q 008276          245 SPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN--N---SMPAEAVDLYLQMEVHG-IE-----PNAI----SVASVLP--  307 (571)
Q Consensus       245 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~m~~~g-~~-----~~~~----~~~~ll~--  307 (571)
                      -..          ....+...+...+..++..  .   ..+.+|.+.+.+-.... ..     .|..    .-..++.  
T Consensus       265 ~~~----------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gt  334 (606)
T KOG0547|consen  265 PKP----------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGT  334 (606)
T ss_pred             ccc----------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhh
Confidence            110          0000111122222222111  1   13455555444322110 01     1111    1111222  


Q ss_pred             HhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHH
Q 008276          308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDA  384 (571)
Q Consensus       308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a  384 (571)
                      -+.-.|+.-.+..-|+..++....+ ...|-.+..+|...++.++....|....+   .|+.+|..-.+.+.-.+++++|
T Consensus       335 F~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A  413 (606)
T KOG0547|consen  335 FHFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEA  413 (606)
T ss_pred             hhhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHH
Confidence            2344678888999999998876333 33477777889999999999999998875   4677888888888889999999


Q ss_pred             HHHHHHHHHCCCCCCH-HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 008276          385 VALFSKMLMSGLCPDS-IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-  462 (571)
Q Consensus       385 ~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-  462 (571)
                      ..=|++.+.  +.|+. ..|..+.-+..+.+.++++...|++.++  .++..+..|+...+.+..+++++.|.+.|+.. 
T Consensus       414 ~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai  489 (606)
T KOG0547|consen  414 IADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI  489 (606)
T ss_pred             HHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence            999999998  66654 4777777777889999999999999988  56677788899999999999999999999987 


Q ss_pred             CCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          463 PMEPN---------ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       463 ~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  529 (571)
                      .+.|+         +.+-..++-.-. .+++..|+.+++++++++|....+|..|+....+.|+.++|+++|++-.
T Consensus       490 ~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  490 ELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             hhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            44443         222233333333 3899999999999999999999999999999999999999999998754

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.70  E-value=4.1e-14  Score=128.51  Aligned_cols=427  Identities=11%  Similarity=0.085  Sum_probs=292.3

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHH-HHHHhhcCCChHHHHHHHHHHHHhCCCCch----hHHHHHHHHH
Q 008276          101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPC-VLKACSGSNSLLVGLQIHCSVVKVGLDYNL----FNGNGLVAMY  175 (571)
Q Consensus       101 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~l~~~~  175 (571)
                      |...|..+..+.+|+..|+-+.+...-|+.-.+.. +-..+.+.+.+.+|+++++..+..-...+.    ...+.+.-.+
T Consensus       207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf  286 (840)
T KOG2003|consen  207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF  286 (840)
T ss_pred             HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence            44566677788999999999988888888766533 334577889999999999988876322232    3344555567


Q ss_pred             HhCCCHHHHHHHHccCCC--CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC------------CHHHHHHHHH--
Q 008276          176 GKCGCLKEARRVLNDMPS--KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKP------------DADTMASLLP--  239 (571)
Q Consensus       176 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p------------~~~t~~~ll~--  239 (571)
                      .+.|+++.|+..|+...+  |+..+--.|+-++...|+.++..+.|.+|..-...|            +....+..+.  
T Consensus       287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd  366 (840)
T KOG2003|consen  287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND  366 (840)
T ss_pred             EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence            889999999999998765  666554445556666899999999999998643333            3333333222  


Q ss_pred             ---HhcCCCCccHHHHH----HHHhhCCCCChhh---HH----------H--------HHHHHHHcCCchHHHHHHHHHH
Q 008276          240 ---SVTNTSPENVLSVK----EMFLKLDNKNLVS---WN----------V--------MIAVYANNSMPAEAVDLYLQME  291 (571)
Q Consensus       240 ---~~~~~~~~~~~~a~----~~~~~~~~~~~~~---~~----------~--------l~~~~~~~g~~~~A~~~~~~m~  291 (571)
                         .+-+....+.+++.    ++...+..|+...   |.          .        -...|.+.|+++.|+++++-+.
T Consensus       367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~  446 (840)
T KOG2003|consen  367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE  446 (840)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence               22222222223222    2222222332211   11          1        1235778899999999998877


Q ss_pred             HCCCCCCHHHHHHHHHH--hccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHH
Q 008276          292 VHGIEPNAISVASVLPA--CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWT  369 (571)
Q Consensus       292 ~~g~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  369 (571)
                      +..-+.-...-+.+-..  +.--.++..|.++-+..+..+ .-+......-.......|++++|.+.+++....|..+-.
T Consensus       447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e  525 (840)
T KOG2003|consen  447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE  525 (840)
T ss_pred             hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence            65433322222222222  222336777777766665433 222222222223334568999999999999887766544


Q ss_pred             HHHH---HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008276          370 SMIS---AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL  446 (571)
Q Consensus       370 ~li~---~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  446 (571)
                      .|..   .+-..|+.++|++.|-++..- +.-+......+...|....+..+|++++-....  -++.|+.+...|.+.|
T Consensus       526 alfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dly  602 (840)
T KOG2003|consen  526 ALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLY  602 (840)
T ss_pred             HHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHh
Confidence            4433   466789999999999988763 334666788888899999999999999988764  5677888999999999


Q ss_pred             HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 008276          447 GRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRV  524 (571)
Q Consensus       447 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  524 (571)
                      -+.|+-..|.+..-.- ..-| +..+..-|...|....=+++++..|+++.-+.|+.......++.++.+.|++..|.++
T Consensus       603 dqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~  682 (840)
T KOG2003|consen  603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDL  682 (840)
T ss_pred             hcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence            9999999998875544 3334 6666666777788888899999999999989997776667777788889999999999


Q ss_pred             HHHHHhC
Q 008276          525 RKFMNSK  531 (571)
Q Consensus       525 ~~~m~~~  531 (571)
                      ++....+
T Consensus       683 yk~~hrk  689 (840)
T KOG2003|consen  683 YKDIHRK  689 (840)
T ss_pred             HHHHHHh
Confidence            9988654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.69  E-value=9.6e-17  Score=149.32  Aligned_cols=257  Identities=14%  Similarity=0.110  Sum_probs=114.4

Q ss_pred             HHHHHHHHcCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 008276          269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI-SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC  347 (571)
Q Consensus       269 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  347 (571)
                      .+...+.+.|++++|++++++......+|+.. .+..+...+...++++.|...++.+...+ +.+...+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence            45778889999999999997655443234444 44445556777899999999999999876 3366677777777 788


Q ss_pred             CCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhcCCCHHHHHHHHH
Q 008276          348 GSLTEARTVFDQMRC--QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG-LCPDSIAFVSVLSACSHAGLLEEGRYYFK  424 (571)
Q Consensus       348 ~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~  424 (571)
                      +++++|..+++..-+  ++...+..++..+.+.++++++..+++++.... .+++...|..+...+.+.|+.++|.+.++
T Consensus        91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~  170 (280)
T PF13429_consen   91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR  170 (280)
T ss_dssp             ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999999887643  567778888999999999999999999987643 34566788888899999999999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 008276          425 IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM--PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS  502 (571)
Q Consensus       425 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  502 (571)
                      +..+.  .+.+......++..+...|+.+++.++++..  ....|+..|..+..++...|++++|+..++++.+.+|+|+
T Consensus       171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~  248 (280)
T PF13429_consen  171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP  248 (280)
T ss_dssp             HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence            99874  2345778889999999999999988888776  2234667788999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          503 GYYVLLSNIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       503 ~~~~~l~~~~~~~g~~~~A~~~~~~m~  529 (571)
                      .+...++.++...|+.++|.++.++..
T Consensus       249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  249 LWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHHHHHHHHHT----------------
T ss_pred             ccccccccccccccccccccccccccc
Confidence            999999999999999999999988764

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.67  E-value=1.3e-11  Score=117.53  Aligned_cols=487  Identities=11%  Similarity=0.061  Sum_probs=336.8

Q ss_pred             hccccccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhH
Q 008276           22 LSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFF   98 (571)
Q Consensus        22 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~   98 (571)
                      .+.+-.+-+-+..+.++ |....+.|+.+....+ +. +|.++..|..-+..=   .+...-.++++...+   .++..|
T Consensus       310 ~GCe~cprSeDvWLeai-RLhp~d~aK~vvA~Av-r~-~P~Sv~lW~kA~dLE---~~~~~K~RVlRKALe~iP~sv~LW  383 (913)
T KOG0495|consen  310 KGCEECPRSEDVWLEAI-RLHPPDVAKTVVANAV-RF-LPTSVRLWLKAADLE---SDTKNKKRVLRKALEHIPRSVRLW  383 (913)
T ss_pred             HHHhhCCchHHHHHHHH-hcCChHHHHHHHHHHH-Hh-CCCChhhhhhHHhhh---hHHHHHHHHHHHHHHhCCchHHHH
Confidence            34444445555555544 4455667899998887 43 344555554443322   223333344444332   244455


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 008276           99 NVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKC  178 (571)
Q Consensus        99 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  178 (571)
                          .+.....+.+.|.-++.+..+. ++.+..    |..++++...++.|..+++...+. ++.+...|.+-...--..
T Consensus       384 ----KaAVelE~~~darilL~rAvec-cp~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~n  453 (913)
T KOG0495|consen  384 ----KAAVELEEPEDARILLERAVEC-CPQSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEAN  453 (913)
T ss_pred             ----HHHHhccChHHHHHHHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhc
Confidence                4455566778899999998875 333333    445667778899999999998765 677888888888888889


Q ss_pred             CCHHHHHHHHccCCC--------CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC--HHHHHHHHHHhcCCCCcc
Q 008276          179 GCLKEARRVLNDMPS--------KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD--ADTMASLLPSVTNTSPEN  248 (571)
Q Consensus       179 g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~  248 (571)
                      |+.+...+++++-..        -+...|-.=...|-..|-.-.+..+....+.-|+...  ..||..--..|.+.+.  
T Consensus       454 gn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~--  531 (913)
T KOG0495|consen  454 GNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPA--  531 (913)
T ss_pred             CCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcch--
Confidence            999999998876432        2444565556667777777777777777777666543  2455555556666555  


Q ss_pred             HHHHHHHHhhCC---CCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHH
Q 008276          249 VLSVKEMFLKLD---NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV  325 (571)
Q Consensus       249 ~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  325 (571)
                      ++-++.++....   +.+...|......--..|..+....+|.+.... ++-....|......+-..|+...|..++..+
T Consensus       532 ~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~a  610 (913)
T KOG0495|consen  532 IECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQA  610 (913)
T ss_pred             HHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            666666666554   345556766666666778888888888888765 2334455555556667778888888888888


Q ss_pred             HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-H
Q 008276          326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI-A  402 (571)
Q Consensus       326 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~  402 (571)
                      .+.. +.+...+..-+..-....+++.|..+|.+...  +....|.--+...--.++.++|.+++++.++  .-|+.. .
T Consensus       611 f~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl  687 (913)
T KOG0495|consen  611 FEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKL  687 (913)
T ss_pred             HHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHH
Confidence            8776 45777888888888888888888888887764  6666777666666677888888888888887  456654 7


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 008276          403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCL  480 (571)
Q Consensus       403 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~  480 (571)
                      |..+.+.+...++.+.|...|..-.+  ..+..+..|-.|.+.-.+.|.+-.|..++++. -..| +...|...|..-.+
T Consensus       688 ~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR  765 (913)
T KOG0495|consen  688 WLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELR  765 (913)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence            77777888888888888888776554  44555677888888888888888888888877 2234 77788888888888


Q ss_pred             cCCHHHHHHHHHHHHhhCCCC------------------------------chhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          481 YSNMDIGILAADHIFHLAPNQ------------------------------SGYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       481 ~g~~~~A~~~~~~~~~~~p~~------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      .|+.+.|..+..++++.-|.+                              +.....++..+....+++.|++.|.+...
T Consensus       766 ~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk  845 (913)
T KOG0495|consen  766 AGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK  845 (913)
T ss_pred             cCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            888888888888777655544                              44555666667777777777777777665


Q ss_pred             CC
Q 008276          531 KG  532 (571)
Q Consensus       531 ~~  532 (571)
                      .+
T Consensus       846 ~d  847 (913)
T KOG0495|consen  846 KD  847 (913)
T ss_pred             cC
Confidence            54

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.65  E-value=4.8e-13  Score=132.01  Aligned_cols=321  Identities=13%  Similarity=0.146  Sum_probs=216.5

Q ss_pred             HHhCCCHHHHHHHHccCCC---CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHH
Q 008276          175 YGKCGCLKEARRVLNDMPS---KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLS  251 (571)
Q Consensus       175 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~  251 (571)
                      ....|++++|.+++.++..   .+...|.+|..+|-+.|+.++++..+-..  ..+.|.                     
T Consensus       149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA--AHL~p~---------------------  205 (895)
T KOG2076|consen  149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA--AHLNPK---------------------  205 (895)
T ss_pred             HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHH--HhcCCC---------------------
Confidence            3444777777777777764   24556777777777777777776554322  222232                     


Q ss_pred             HHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCC
Q 008276          252 VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ  331 (571)
Q Consensus       252 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  331 (571)
                                 |...|..+.+...+.|.++.|.-+|.+.++.. +++...+.--...|-+.|+...|..-|.++.....+
T Consensus       206 -----------d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~  273 (895)
T KOG2076|consen  206 -----------DYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP  273 (895)
T ss_pred             -----------ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence                       44556666666677777777777777776654 344444444555666777777777777777665432


Q ss_pred             CChhHHH----HHHHHHHhcCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-------
Q 008276          332 PNLRLEN----ALVDMYAKCGSLTEARTVFDQMRC-----QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG-------  395 (571)
Q Consensus       332 ~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-------  395 (571)
                      .|..-+.    ..+..+...++-+.|.+.++....     -+...++.++..+.+...++.|......+....       
T Consensus       274 ~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e  353 (895)
T KOG2076|consen  274 VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSE  353 (895)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhh
Confidence            2322222    234455566666777777666553     244457777777777777777777776665511       


Q ss_pred             --------------------CCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHH
Q 008276          396 --------------------LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL--VPRIEHFACLVDLLGRAGKVE  453 (571)
Q Consensus       396 --------------------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~  453 (571)
                                          +.++... ..+.-++.+....+....+...+.+. .+  .-+...|.-+.++|...|++.
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~  431 (895)
T KOG2076|consen  354 WDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYK  431 (895)
T ss_pred             hhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHH
Confidence                                2222222 12223334444444444444444443 43  335578899999999999999


Q ss_pred             HHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          454 EAYDLIKQM-PME--PNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       454 ~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      +|+.+|..+ ...  .+...|--+...|...|.+++|++.|++++...|++..+...|+..+.+.|+.++|.+.+..|..
T Consensus       432 ~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~  511 (895)
T KOG2076|consen  432 EALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIIN  511 (895)
T ss_pred             HHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence            999999998 222  25668999999999999999999999999999999999999999999999999999999998874


Q ss_pred             CC
Q 008276          531 KG  532 (571)
Q Consensus       531 ~~  532 (571)
                      .+
T Consensus       512 ~D  513 (895)
T KOG2076|consen  512 PD  513 (895)
T ss_pred             CC
Confidence            44

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=9.3e-11  Score=107.74  Aligned_cols=489  Identities=14%  Similarity=0.065  Sum_probs=345.9

Q ss_pred             hhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC--CCh-hhHHHHHHHHHH
Q 008276           31 GDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN--KNV-VFFNVLIRSYVN  107 (571)
Q Consensus        31 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~  107 (571)
                      |-..++.-...++++.|..+|++.+ ... ..+...|...+.+=.++..+.-|+.+|++...  |.+ ..|...+..--.
T Consensus        76 WikYaqwEesq~e~~RARSv~ERAL-dvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~  153 (677)
T KOG1915|consen   76 WIKYAQWEESQKEIQRARSVFERAL-DVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM  153 (677)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHH-hcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            3444555566678888999999888 444 56788888888888888999999999987654  322 246666666677


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHH
Q 008276          108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV  187 (571)
Q Consensus       108 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~  187 (571)
                      .|+...|.++|+...+.  +|+...|.+.|+--.+-+..+.|..+++..+-.  .|++..|-.....--++|....|..+
T Consensus       154 LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~V  229 (677)
T KOG1915|consen  154 LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSV  229 (677)
T ss_pred             hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHH
Confidence            79999999999998874  799999999999988999999999999988764  58899998888888999999999999


Q ss_pred             HccCCC--C----CchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcCCCCc-cHHHHHHHHhhC
Q 008276          188 LNDMPS--K----DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD-ADTMASLLPSVTNTSPE-NVLSVKEMFLKL  259 (571)
Q Consensus       188 ~~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~-~~~~a~~~~~~~  259 (571)
                      |+...+  .    +...+.+....-..+..++.|.-+|.-.++.=.+.. ...|.....-=-+.|+. .++.+.---.++
T Consensus       230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~  309 (677)
T KOG1915|consen  230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF  309 (677)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence            987764  1    223455555555667778888888887776522211 12222222221222221 133332222222


Q ss_pred             -----C---CCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH-------HHHHHHHHHh---ccCCchHHHHHH
Q 008276          260 -----D---NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA-------ISVASVLPAC---GDLSALLLGRKI  321 (571)
Q Consensus       260 -----~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~ll~~~---~~~~~~~~a~~~  321 (571)
                           .   +.|-.+|-..++.-...|+.+...++|+..+.. ++|-.       ..|.-+--+|   ....+.+.+.++
T Consensus       310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v  388 (677)
T KOG1915|consen  310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV  388 (677)
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence                 1   345567777778888889999999999999864 55532       2232222222   346789999999


Q ss_pred             HHHHHHcCCCCChhHHHHHHHHH----HhcCCHHHHHHHHhhCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008276          322 HRYVERKKLQPNLRLENALVDMY----AKCGSLTEARTVFDQMR--CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSG  395 (571)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g  395 (571)
                      |+..++. ++....+|..+--+|    .++.++..|.+++....  .|-..+|...|..-.+.+++|.+..+|++.++. 
T Consensus       389 yq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~-  466 (677)
T KOG1915|consen  389 YQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF-  466 (677)
T ss_pred             HHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence            9999883 566667776554444    46789999999998876  388889999999999999999999999999995 


Q ss_pred             CCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 008276          396 LCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIWGS  473 (571)
Q Consensus       396 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~  473 (571)
                       .| |..+|......-...|+.+.|..+|..+.....+......|.+.|+--...|.++.|..+++++ ...+....|-+
T Consensus       467 -~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWis  545 (677)
T KOG1915|consen  467 -SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWIS  545 (677)
T ss_pred             -ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHh
Confidence             44 5668888888778899999999999999875333334456777777778899999999999988 44555567776


Q ss_pred             HHHHHH-----hcC-----------CHHHHHHHHHHHHhhC--CCCchhHHHHHHH----HHhcCCHHHHHHHHHHHH
Q 008276          474 LVAACC-----LYS-----------NMDIGILAADHIFHLA--PNQSGYYVLLSNI----YAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       474 l~~~~~-----~~g-----------~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~----~~~~g~~~~A~~~~~~m~  529 (571)
                      +..--.     +.+           +...|..+|+++....  .....-...|..+    -...|...+...+-+.|.
T Consensus       546 FA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP  623 (677)
T KOG1915|consen  546 FAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP  623 (677)
T ss_pred             HHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence            665433     333           5668888888887633  1112233333333    334566666666666554

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=1.3e-11  Score=113.03  Aligned_cols=257  Identities=10%  Similarity=0.092  Sum_probs=208.5

Q ss_pred             HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhc
Q 008276          270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL--QPNLRLENALVDMYAKC  347 (571)
Q Consensus       270 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~  347 (571)
                      +..++....+.+++.+-.......|.+.+...-+....+.....++++|+.+|+++.+.+.  -.|..+|+.++-.-...
T Consensus       233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~  312 (559)
T KOG1155|consen  233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK  312 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence            4456667778888888888888888776666666666677788999999999999998742  12566777665433322


Q ss_pred             CCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHHH
Q 008276          348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGRYYFKIM  426 (571)
Q Consensus       348 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~  426 (571)
                      .++.---...-.+.+--+.|..++...|.-.++.++|..+|+..++  +.|... .|+.+..-|....+...|.+.++.+
T Consensus       313 skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA  390 (559)
T KOG1155|consen  313 SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA  390 (559)
T ss_pred             HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence            2222222222233344566778888899999999999999999999  556544 7888888899999999999999999


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 008276          427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY  504 (571)
Q Consensus       427 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  504 (571)
                      .+  -.+.|-..|..|..+|.-.+...-|+-.|++. ..+| |+..|.+|...|.+.++.++|++.|.++...+..+..+
T Consensus       391 vd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~  468 (559)
T KOG1155|consen  391 VD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA  468 (559)
T ss_pred             Hh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence            86  34567789999999999999999999999998 7778 88999999999999999999999999999999888899


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          505 YVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       505 ~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      +..|+++|.+.++.++|..++++..+
T Consensus       469 l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  469 LVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999999999999999988875

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=3.4e-13  Score=128.97  Aligned_cols=275  Identities=12%  Similarity=0.036  Sum_probs=218.7

Q ss_pred             HHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCchHHHHHHHHHHHCC--CCCCHHHHHHHHHHhccCCchHHHHHHH-
Q 008276          249 VLSVKEMFLKLDN---KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG--IEPNAISVASVLPACGDLSALLLGRKIH-  322 (571)
Q Consensus       249 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~-  322 (571)
                      ...|...|.+...   ........+..+|...+++++|..+|+.+++..  ..-+..+|.+.+-.+-+    +-+...+ 
T Consensus       335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~La  410 (638)
T KOG1126|consen  335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLA  410 (638)
T ss_pred             HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHH
Confidence            5666667766442   233556678899999999999999999998742  11255777777755422    2222333 


Q ss_pred             HHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 008276          323 RYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQ---DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD  399 (571)
Q Consensus       323 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~  399 (571)
                      +.+.+.. +..+.+|.++..+|.-+++.+.|++.|++..+-   ...+|+.+..-+.....+|.|...|+..+.  +.|.
T Consensus       411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r  487 (638)
T KOG1126|consen  411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR  487 (638)
T ss_pred             HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence            2333333 667899999999999999999999999998863   456888888888999999999999999877  5665


Q ss_pred             HH-HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 008276          400 SI-AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVA  476 (571)
Q Consensus       400 ~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~  476 (571)
                      .. .|..+...|.+.++++.|+-.|+++.+.  .+.+......+...+.+.|+.|+|+.+++++ ..+| |+..--.-+.
T Consensus       488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~  565 (638)
T KOG1126|consen  488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS  565 (638)
T ss_pred             hhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence            54 8888899999999999999999999853  2335566778888999999999999999998 5555 5555555667


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          477 ACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       477 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      .+...+++++|+..++++.+.-|++..++..++..|.+.|+.+.|+.-|.-+.+-+
T Consensus       566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld  621 (638)
T KOG1126|consen  566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD  621 (638)
T ss_pred             HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence            77789999999999999999999999999999999999999999999998887654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.59  E-value=1.2e-13  Score=132.02  Aligned_cols=247  Identities=14%  Similarity=0.114  Sum_probs=199.5

Q ss_pred             CchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCCHHHHHHH
Q 008276          279 MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK--LQPNLRLENALVDMYAKCGSLTEARTV  356 (571)
Q Consensus       279 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~  356 (571)
                      +..+|+..|.++... +.-+......+..+|...+++++++++|+.+.+..  ...+..+|.+.+--+-+.-.+..--+-
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~  412 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD  412 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence            578899999985443 34445677778889999999999999999998753  123566777666433332222221122


Q ss_pred             HhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 008276          357 FDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR  435 (571)
Q Consensus       357 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  435 (571)
                      +-.+....+.+|.++..+|.-+++.+.|++.|++.++  +.| ...+|+.+..-+.....+|.|...|+....   +.|.
T Consensus       413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---~~~r  487 (638)
T KOG1126|consen  413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG---VDPR  487 (638)
T ss_pred             HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc---CCch
Confidence            2222335778999999999999999999999999998  677 566898888888899999999999998873   3443


Q ss_pred             H-HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 008276          436 I-EHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY  512 (571)
Q Consensus       436 ~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  512 (571)
                      . ..|..+...|.++++++.|+-.|+++ .+.| +.+....+...+.+.|+.++|+.+++++..++|.++-.-+..+..+
T Consensus       488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il  567 (638)
T KOG1126|consen  488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL  567 (638)
T ss_pred             hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence            3 56777889999999999999999998 8888 6667777888899999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhC
Q 008276          513 AKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       513 ~~~g~~~~A~~~~~~m~~~  531 (571)
                      ...+++++|+..++++++-
T Consensus       568 ~~~~~~~eal~~LEeLk~~  586 (638)
T KOG1126|consen  568 FSLGRYVEALQELEELKEL  586 (638)
T ss_pred             HhhcchHHHHHHHHHHHHh
Confidence            9999999999999999865

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=7.1e-11  Score=108.30  Aligned_cols=256  Identities=13%  Similarity=0.073  Sum_probs=199.7

Q ss_pred             HHHHHHHHHcCCchHHHHHHHHHHHCCC--CCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 008276          268 NVMIAVYANNSMPAEAVDLYLQMEVHGI--EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYA  345 (571)
Q Consensus       268 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  345 (571)
                      +....+.-...+++.|+.+|+++++...  --|..+|+.++-.-.....+    .++..-...--+-.+.|...+.+-|.
T Consensus       266 ~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL----s~LA~~v~~idKyR~ETCCiIaNYYS  341 (559)
T KOG1155|consen  266 TQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL----SYLAQNVSNIDKYRPETCCIIANYYS  341 (559)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH----HHHHHHHHHhccCCccceeeehhHHH
Confidence            3344455667899999999999988631  12567887777554332222    12211111111344567777888899


Q ss_pred             hcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHH
Q 008276          346 KCGSLTEARTVFDQMRCQ---DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRY  421 (571)
Q Consensus       346 ~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~  421 (571)
                      -.++.++|...|+...+-   ....|+.+.+-|...++...|++-|+.+++  +.| |...|..|.++|.-.+...-|+-
T Consensus       342 lr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLy  419 (559)
T KOG1155|consen  342 LRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALY  419 (559)
T ss_pred             HHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHH
Confidence            999999999999998863   345799999999999999999999999999  445 77799999999999999999999


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---
Q 008276          422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM--PMEPNERIWGSLVAACCLYSNMDIGILAADHIFH---  496 (571)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---  496 (571)
                      +|++..+  --+.|...|.+|.++|.+.++.++|++-|...  .-+.+...+..|...|-+.++.++|...|++.++   
T Consensus       420 YfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~  497 (559)
T KOG1155|consen  420 YFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSE  497 (559)
T ss_pred             HHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            9999986  34557789999999999999999999999988  2244668899999999999999999999999887   


Q ss_pred             ----hCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276          497 ----LAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       497 ----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                          .+|....+...|+.-+.+.+++++|..+.......
T Consensus       498 ~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~  536 (559)
T KOG1155|consen  498 LEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG  536 (559)
T ss_pred             hhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence                33545556667888889999999999887766544

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.59  E-value=1.9e-10  Score=105.72  Aligned_cols=454  Identities=10%  Similarity=0.056  Sum_probs=326.1

Q ss_pred             ChhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCc-ccHHHHHH
Q 008276           63 NPSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDC-YTYPCVLK  138 (571)
Q Consensus        63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~li~  138 (571)
                      +...|....+-=...+++..|+.+|++...   ++...|-.-+..-.++.....|..+|+.....  -|-. ..|-..+.
T Consensus        72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~y  149 (677)
T KOG1915|consen   72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIY  149 (677)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHH
Confidence            455666666666677899999999998876   56778888899999999999999999998764  3332 23444444


Q ss_pred             HhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCC--CCCchhHHHHHHHHHhCCCchHHH
Q 008276          139 ACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP--SKDVVTWNSMVAGYAQNGRFDEAL  216 (571)
Q Consensus       139 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~  216 (571)
                      .--..|++..|.++|+.-..  ..|+...|.+.++.-.+-..++.|..+++...  .|++.+|--....-.+.|+...|.
T Consensus       150 mEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR  227 (677)
T KOG1915|consen  150 MEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR  227 (677)
T ss_pred             HHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence            44567999999999998776  58999999999999999999999999999876  589999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHhcCC--CCccHHHHHHHHhhCC----CCC-hhhHHHHHHHHHHcCCchHHHHH---
Q 008276          217 DVCREMESLRIKPDADTMASLLPSVTNT--SPENVLSVKEMFLKLD----NKN-LVSWNVMIAVYANNSMPAEAVDL---  286 (571)
Q Consensus       217 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~~~a~~~~~~~~----~~~-~~~~~~l~~~~~~~g~~~~A~~~---  286 (571)
                      .+|+...+.  -.|...-..++.+++.-  .....+.+.-+++-..    ... ...|..+...--+-|+.....+.   
T Consensus       228 ~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~  305 (677)
T KOG1915|consen  228 SVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG  305 (677)
T ss_pred             HHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence            999988764  22333334444444332  2233566666554433    211 23344333333334443333222   


Q ss_pred             -----HHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCCh--hHHHHHH-----HH---HHhcCCHH
Q 008276          287 -----YLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL--RLENALV-----DM---YAKCGSLT  351 (571)
Q Consensus       287 -----~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~-----~~---~~~~~~~~  351 (571)
                           |+.++..+ +.|-.+|--.+..-...|+.+...++|+.++..- +|-.  ..|...|     .+   =....+.+
T Consensus       306 KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~e  383 (677)
T KOG1915|consen  306 KRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVE  383 (677)
T ss_pred             hhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence                 33444433 5577778778887788899999999999988753 3421  1121111     11   13467888


Q ss_pred             HHHHHHhhCCC--C-ChhH----HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHH
Q 008276          352 EARTVFDQMRC--Q-DVVS----WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK  424 (571)
Q Consensus       352 ~a~~~~~~~~~--~-~~~~----~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~  424 (571)
                      .+.++|+...+  | ...|    |-.......++.+...|.+++...+.  .-|-..+|...|..-.+.++++.+..+++
T Consensus       384 rtr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYE  461 (677)
T KOG1915|consen  384 RTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYE  461 (677)
T ss_pred             HHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence            88888887765  3 2333    44445555678899999999987665  78888899999998889999999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 008276          425 IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEP----NERIWGSLVAACCLYSNMDIGILAADHIFHLAPN  500 (571)
Q Consensus       425 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  500 (571)
                      +..+  -.+.+..+|......-...|+.+.|..+|.-+-..|    -...|.+.|.--...|.++.|..+|+++++..+-
T Consensus       462 kfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h  539 (677)
T KOG1915|consen  462 KFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH  539 (677)
T ss_pred             HHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence            9986  334466888888888889999999999998773234    3446777777777899999999999999998864


Q ss_pred             CchhHHHHHHHHH-----hcC-----------CHHHHHHHHHHHH
Q 008276          501 QSGYYVLLSNIYA-----KAG-----------RWGDVKRVRKFMN  529 (571)
Q Consensus       501 ~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~  529 (571)
                      . ..|.+.+..-.     +.|           ....|..+|++..
T Consensus       540 ~-kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn  583 (677)
T KOG1915|consen  540 V-KVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN  583 (677)
T ss_pred             c-hHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence            3 37777766544     344           5667788887765

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.59  E-value=8.5e-12  Score=121.54  Aligned_cols=219  Identities=10%  Similarity=-0.065  Sum_probs=115.8

Q ss_pred             HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChh-------HHHHHHHH
Q 008276          271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLR-------LENALVDM  343 (571)
Q Consensus       271 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~  343 (571)
                      ...+...|+++.|...++++.+.. +-+......+...|.+.|+++++..++..+.+.+..++..       .|..++..
T Consensus       160 a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~  238 (398)
T PRK10747        160 VRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ  238 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            345566666777777666666543 3344555556666666666666666666666654332211       12222222


Q ss_pred             HHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHH
Q 008276          344 YAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR  420 (571)
Q Consensus       344 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~  420 (571)
                      .....+.+...++++.+.+   .++.....+...+...|+.++|.+.+++..+  ..|+....  ++.+....++.+++.
T Consensus       239 ~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~~~l~~~~~~~al  314 (398)
T PRK10747        239 AMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLIPRLKTNNPEQLE  314 (398)
T ss_pred             HHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHHhhccCCChHHHH
Confidence            2233344444555555442   3445555556666666666666666665555  23333221  122223345566666


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIWGSLVAACCLYSNMDIGILAADHIFH  496 (571)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  496 (571)
                      +..+...+  ..+-|+..+..+...+.+.|++++|.+.|++. ...|+...+..+...+.+.|+.++|...+++...
T Consensus       315 ~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        315 KVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            66655554  22334444555556666666666666666555 4455555555555555556666666555555544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.58  E-value=5.8e-12  Score=122.73  Aligned_cols=251  Identities=8%  Similarity=-0.018  Sum_probs=197.2

Q ss_pred             HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHH--HHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 008276          270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA--SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC  347 (571)
Q Consensus       270 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  347 (571)
                      ...+..+.|+++.|.+++.++.+.  .|+.....  .....+...|+++.|...++.+.+.. +.+......+...|.+.
T Consensus       124 aA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~  200 (398)
T PRK10747        124 AAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRT  200 (398)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHH
Confidence            345557899999999999999874  55554333  33567888999999999999999887 56678888899999999


Q ss_pred             CCHHHHHHHHhhCCCC---Chh--------HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCH
Q 008276          348 GSLTEARTVFDQMRCQ---DVV--------SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLL  416 (571)
Q Consensus       348 ~~~~~a~~~~~~~~~~---~~~--------~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~  416 (571)
                      |++++|.+++..+.+.   +..        .|..++.......+.+...++++.+.+. .+.+......+...+...|+.
T Consensus       201 gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~  279 (398)
T PRK10747        201 GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDH  279 (398)
T ss_pred             HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCH
Confidence            9999999999988752   111        3334444444555667777777776543 445777888899999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276          417 EEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHI  494 (571)
Q Consensus       417 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~  494 (571)
                      ++|..++++..+.   +|+....  ++.+....++.+++++.+++. ...| |+..+..+...|.+.+++++|...|+++
T Consensus       280 ~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~a  354 (398)
T PRK10747        280 DTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAA  354 (398)
T ss_pred             HHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999998763   5555432  334444569999999999887 5566 5667888999999999999999999999


Q ss_pred             HhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          495 FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       495 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      .+..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus       355 l~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        355 LKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            9999864 5677899999999999999999997654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=8.1e-11  Score=108.60  Aligned_cols=224  Identities=11%  Similarity=-0.010  Sum_probs=177.0

Q ss_pred             HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 008276          272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLT  351 (571)
Q Consensus       272 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  351 (571)
                      .-+.-.|+.-.|..-|+..+.....++. .|..+...|....+.++..+.|....+.+ +.++.+|..-.+.+.-.++++
T Consensus       334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e  411 (606)
T KOG0547|consen  334 TFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYE  411 (606)
T ss_pred             hhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHH
Confidence            3455678999999999999886544433 37677778899999999999999999887 567777877778888889999


Q ss_pred             HHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276          352 EARTVFDQMRCQ---DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE  428 (571)
Q Consensus       352 ~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  428 (571)
                      +|..=|++...-   ++..|-.+..+.-+.+++++++..|++.++. ++--+..|+.....+...++++.|.+.|+..++
T Consensus       412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~  490 (606)
T KOG0547|consen  412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE  490 (606)
T ss_pred             HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence            999999998863   4455666666667889999999999999885 555567999999999999999999999999875


Q ss_pred             hcCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 008276          429 QYKL------VPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAP  499 (571)
Q Consensus       429 ~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  499 (571)
                      .-..      .+.+.+-..++-.-.+ +++..|..++.+. .++| ....|..|...-.+.|+.++|+++|++...+-.
T Consensus       491 LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr  568 (606)
T KOG0547|consen  491 LEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR  568 (606)
T ss_pred             hccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            4111      1122223333333333 8999999999988 7777 566899999999999999999999999887654

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.56  E-value=1.4e-11  Score=121.43  Aligned_cols=422  Identities=14%  Similarity=0.065  Sum_probs=247.0

Q ss_pred             CCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 008276           92 NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGL  171 (571)
Q Consensus        92 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l  171 (571)
                      .||.+||.++|.-|+..|+.+.|- +|.-|.-+..+.+...|+.++.+....++.+.+.           .|-..+|..|
T Consensus        22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L   89 (1088)
T KOG4318|consen   22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL   89 (1088)
T ss_pred             CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence            467778888888888888877777 7777776666667777777777777777766554           5667778888


Q ss_pred             HHHHHhCCCHHH---HHHHHccCCC---C----CchhHHHHHHHHHhCCCchHHHHH-----HHH----HHHCC-CCCCH
Q 008276          172 VAMYGKCGCLKE---ARRVLNDMPS---K----DVVTWNSMVAGYAQNGRFDEALDV-----CRE----MESLR-IKPDA  231 (571)
Q Consensus       172 ~~~~~~~g~~~~---A~~~~~~~~~---~----~~~~~~~li~~~~~~g~~~~a~~~-----~~~----m~~~g-~~p~~  231 (571)
                      ..+|...||+..   .++.++.+..   +    ....|- ++...+.-+-...|...     ++.    ..+.+ ..|..
T Consensus        90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~f-l~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs  168 (1088)
T KOG4318|consen   90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWF-LMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS  168 (1088)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHH-HhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence            888888877654   2221111111   0    111111 12211111212222111     111    11111 11211


Q ss_pred             H---HHHHHHHHhcCCCCccHHHHHHHHhhCCC-CChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008276          232 D---TMASLLPSVTNTSPENVLSVKEMFLKLDN-KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP  307 (571)
Q Consensus       232 ~---t~~~ll~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~  307 (571)
                      .   ++..+++-+.... ..+++...+.+...+ +++.+|.+++++-...|+.+.|..++.+|.+.|.+.+..-|..++-
T Consensus       169 a~~~p~~vfLrqnv~~n-tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~  247 (1088)
T KOG4318|consen  169 AWNAPFQVFLRQNVVDN-TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLL  247 (1088)
T ss_pred             cccchHHHHHHHhccCC-chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhh
Confidence            1   1111233332222 125666666666655 8999999999999999999999999999999999999988888876


Q ss_pred             HhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH------------------------HHHhh----
Q 008276          308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR------------------------TVFDQ----  359 (571)
Q Consensus       308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~------------------------~~~~~----  359 (571)
                      +   .++...++.+++.|.+.|+.|+..|+...+..+...|....+.                        +.++.    
T Consensus       248 g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~  324 (1088)
T KOG4318|consen  248 G---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRK  324 (1088)
T ss_pred             c---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHH
Confidence            6   7888888999999999999999998876655555433321111                        00000    


Q ss_pred             -----CCC-------CChhHHHHHHHHHHhcCChHH--------------------------HHHHHHHHHHC-------
Q 008276          360 -----MRC-------QDVVSWTSMISAYGMSGQGYD--------------------------AVALFSKMLMS-------  394 (571)
Q Consensus       360 -----~~~-------~~~~~~~~li~~~~~~~~~~~--------------------------a~~~~~~m~~~-------  394 (571)
                           .++       .....|...+.. ..+|+-+.                          +..+|.+....       
T Consensus       325 ~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~  403 (1088)
T KOG4318|consen  325 SVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYY  403 (1088)
T ss_pred             HHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence                 000       001112211111 11111111                          11222222111       


Q ss_pred             ----------------------CCCCCHH----------------------------HHHHHHHHhhcCCCHHHHHHHHH
Q 008276          395 ----------------------GLCPDSI----------------------------AFVSVLSACSHAGLLEEGRYYFK  424 (571)
Q Consensus       395 ----------------------g~~p~~~----------------------------~~~~l~~~~~~~~~~~~a~~~~~  424 (571)
                                            ...||..                            .-+.++..|+..-+..+++..-+
T Consensus       404 ~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~e  483 (1088)
T KOG4318|consen  404 AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEE  483 (1088)
T ss_pred             HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                  0112211                            11112222222222223332222


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-
Q 008276          425 IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP-----MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA-  498 (571)
Q Consensus       425 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-  498 (571)
                      ..... -+   ...|..|++.+....+.+.|..+.++..     +..|..-+..+.+.+.+.+....+..+++++.+.- 
T Consensus       484 kye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~  559 (1088)
T KOG4318|consen  484 KYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAE  559 (1088)
T ss_pred             HHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhh
Confidence            22111 11   1557788888888889999999988882     23455667788888899999999999999887733 


Q ss_pred             --CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008276          499 --PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKK  535 (571)
Q Consensus       499 --p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~  535 (571)
                        |........+.+.....|+.+.-.+..+-+...|+.-
T Consensus       560 n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e  598 (1088)
T KOG4318|consen  560 NEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE  598 (1088)
T ss_pred             CCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence              4445667777777888999999999999888888776

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=3e-11  Score=113.55  Aligned_cols=476  Identities=12%  Similarity=0.007  Sum_probs=296.4

Q ss_pred             HHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcc--cCCCChhhHHHHHHHHHHcCCh
Q 008276           34 CNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDE--ITNKNVVFFNVLIRSYVNNYLY  111 (571)
Q Consensus        34 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~~~~  111 (571)
                      +.+-+....++..|.-+-+++- ..+  -|+..---+++++.-.|+++.|..+...  +...|..+......++.+..++
T Consensus        22 ~~r~~l~q~~y~~a~f~adkV~-~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~   98 (611)
T KOG1173|consen   22 LVRDALMQHRYKTALFWADKVA-GLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEW   98 (611)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHH-hcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            3333444455666666666665 444  5666667788888888999988888754  4457888888889999999999


Q ss_pred             hHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccC
Q 008276          112 YDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM  191 (571)
Q Consensus       112 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  191 (571)
                      ++|..++..-.   +.-+...|-..=.  ...-..+.+.    ++.  ++......+-.-...|......++|...|.+.
T Consensus        99 ~~al~vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~----~~~--~~~~essic~lRgk~y~al~n~~~ar~~Y~~A  167 (611)
T KOG1173|consen   99 DQALLVLGRGH---VETNPFSYYEKDA--ANTLELNSAG----EDL--MINLESSICYLRGKVYVALDNREEARDKYKEA  167 (611)
T ss_pred             HHHHHHhcccc---hhhcchhhcchhh--hceeccCccc----ccc--cccchhceeeeeeehhhhhccHHHHHHHHHHH
Confidence            99999987321   0111111100000  0000000000    000  00111111111123344555666666666665


Q ss_pred             CCCCchhHHHHHHHHHhCC-CchHHHHHHHHHHHC-CCCCCHHHHHHHHHHh-cCCCC-ccHHHHHHHHhhCCCCChhhH
Q 008276          192 PSKDVVTWNSMVAGYAQNG-RFDEALDVCREMESL-RIKPDADTMASLLPSV-TNTSP-ENVLSVKEMFLKLDNKNLVSW  267 (571)
Q Consensus       192 ~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~-~~~~~-~~~~~a~~~~~~~~~~~~~~~  267 (571)
                      ...|+..+..+...-...- -..+-..+++.+--. -.+.+......+.... .+..+ .+.....+.-....+.++...
T Consensus       168 l~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll  247 (611)
T KOG1173|consen  168 LLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLL  247 (611)
T ss_pred             HhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHH
Confidence            5555555444332211110 011112222210000 0111111111111111 00000 000000000000112344555


Q ss_pred             HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 008276          268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC  347 (571)
Q Consensus       268 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  347 (571)
                      ....+-+...+++.+..++.+...+.. ++....+..-|.++...|+...-..+-..+.+.. +....+|-++.-.|.-.
T Consensus       248 ~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i  325 (611)
T KOG1173|consen  248 AEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMI  325 (611)
T ss_pred             HHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHh
Confidence            556677788899999999999988764 5566666666778888888887777777777764 56677888888888888


Q ss_pred             CCHHHHHHHHhhCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHH
Q 008276          348 GSLTEARTVFDQMRCQDV---VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD-SIAFVSVLSACSHAGLLEEGRYYF  423 (571)
Q Consensus       348 ~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~  423 (571)
                      |+.++|++.|.+...-|.   ..|-.+...|.-.|..|+|+..|..+-+.  -|. ...+.-+.--|.+.++.+.|.++|
T Consensus       326 ~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff  403 (611)
T KOG1173|consen  326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFF  403 (611)
T ss_pred             cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence            999999999998775333   46999999999999999999999887763  332 223333445577889999999999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276          424 KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM--------PMEP-NERIWGSLVAACCLYSNMDIGILAADHI  494 (571)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~  494 (571)
                      .....  -.+.|+...+-+.-.....+.+.+|..+|+..        +..+ ...+++.|..+|.+.+.+++|+..++++
T Consensus       404 ~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a  481 (611)
T KOG1173|consen  404 KQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA  481 (611)
T ss_pred             HHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            98874  23445566777777777788899999988865        1122 4567888999999999999999999999


Q ss_pred             HhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          495 FHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       495 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  529 (571)
                      +.+.|.+..++..++-+|...|+++.|.+.|.+..
T Consensus       482 L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL  516 (611)
T KOG1173|consen  482 LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL  516 (611)
T ss_pred             HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            99999999999999999999999999999888765

>TIGR00540 hemY_coli hemY protein

Probab=99.55  E-value=1.7e-11  Score=120.11  Aligned_cols=282  Identities=8%  Similarity=-0.035  Sum_probs=176.5

Q ss_pred             HhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHH
Q 008276          207 AQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDL  286 (571)
Q Consensus       207 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  286 (571)
                      ...|+++.|.+.+.+..+.  .|+.                                ...+-....++.+.|+++.|.++
T Consensus        95 ~~~g~~~~A~~~l~~~~~~--~~~~--------------------------------~~~~llaA~aa~~~g~~~~A~~~  140 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADH--AAEP--------------------------------VLNLIKAAEAAQQRGDEARANQH  140 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhc--CCCC--------------------------------HHHHHHHHHHHHHCCCHHHHHHH
Confidence            4588999999988776554  2332                                12233344566677888888888


Q ss_pred             HHHHHHCCCCCCH--HHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 008276          287 YLQMEVHGIEPNA--ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--  362 (571)
Q Consensus       287 ~~~m~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--  362 (571)
                      +.+..+..  |+.  .........+...|+++.|...++.+.+.. +.+..+...+...+...|++++|.+.+..+.+  
T Consensus       141 l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~  217 (409)
T TIGR00540       141 LEEAAELA--GNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG  217 (409)
T ss_pred             HHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence            87776543  333  233334556677788888888888887775 44556677777788888888888887777764  


Q ss_pred             -CChhHHH----HHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 008276          363 -QDVVSWT----SMISAYGMSGQGYDAVALFSKMLMSG---LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP  434 (571)
Q Consensus       363 -~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  434 (571)
                       .+...+.    .........+..+++.+.+..+.+..   .+.+...+..+...+...|+.++|.+.+++..+.   .|
T Consensus       218 ~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~p  294 (409)
T TIGR00540       218 LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LG  294 (409)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CC
Confidence             2222221    11111122233333334444444421   1126667777778888888888888888888764   22


Q ss_pred             CHHH---HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CH--HHHHHHHHHHHhcCCHHHHHHHHHH--HHhhCCCCchhH
Q 008276          435 RIEH---FACLVDLLGRAGKVEEAYDLIKQM-PMEP-NE--RIWGSLVAACCLYSNMDIGILAADH--IFHLAPNQSGYY  505 (571)
Q Consensus       435 ~~~~---~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~p~~~~~~  505 (571)
                      +...   ...........++.+.+.+.+++. ...| |+  ....++...+.+.|++++|.+.|++  ..+..|++ ..+
T Consensus       295 d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~  373 (409)
T TIGR00540       295 DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDL  373 (409)
T ss_pred             CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHH
Confidence            2221   111111223346677777777766 3344 33  5566788888888888888888884  55566644 446


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          506 VLLSNIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       506 ~~l~~~~~~~g~~~~A~~~~~~m~  529 (571)
                      ..++..+.+.|+.++|.+++++-.
T Consensus       374 ~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       374 AMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Confidence            688888888888888888888753

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR00540 hemY_coli hemY protein

Probab=99.54  E-value=3.5e-11  Score=118.00  Aligned_cols=286  Identities=11%  Similarity=-0.023  Sum_probs=182.9

Q ss_pred             HhCCCHHHHHHHHccCCC--CCch-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHH
Q 008276          176 GKCGCLKEARRVLNDMPS--KDVV-TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSV  252 (571)
Q Consensus       176 ~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a  252 (571)
                      ...|+++.|.+.+....+  |+.. .+-....+..+.|+++.|.+.+.+..+..  |+..                    
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~--------------------  152 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDN--------------------  152 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCc--------------------
Confidence            345666666666655543  2222 22333455566677777777776665421  2210                    


Q ss_pred             HHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCC
Q 008276          253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP  332 (571)
Q Consensus       253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  332 (571)
                                 ....-.....+...|+++.|...++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+
T Consensus       153 -----------l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~  220 (409)
T TIGR00540       153 -----------ILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD  220 (409)
T ss_pred             -----------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence                       0111222445566667777777777766653 2344555666666677777777777777776665332


Q ss_pred             ChhH-------HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 008276          333 NLRL-------ENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA  402 (571)
Q Consensus       333 ~~~~-------~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  402 (571)
                      ....       +..++..-......+.....++...+   .+...+..+...+...|++++|.+.+++..+.  .||...
T Consensus       221 ~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~  298 (409)
T TIGR00540       221 DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRA  298 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCccc
Confidence            2221       11111111222234455555665553   47788899999999999999999999999984  444442


Q ss_pred             --H-HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHH
Q 008276          403 --F-VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ--M-PMEPNERIWGSLVA  476 (571)
Q Consensus       403 --~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~  476 (571)
                        + ..........++.+.+.+.++...+.....|+.....++...+.+.|++++|.+.|+.  . ...|+...+..+..
T Consensus       299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~  378 (409)
T TIGR00540       299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAAD  378 (409)
T ss_pred             chhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHH
Confidence              1 1122223445788899999988887533333326677899999999999999999994  3 66899988999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhh
Q 008276          477 ACCLYSNMDIGILAADHIFHL  497 (571)
Q Consensus       477 ~~~~~g~~~~A~~~~~~~~~~  497 (571)
                      .+.+.|+.++|.+++++....
T Consensus       379 ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       379 AFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            999999999999999998663

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.54  E-value=2.5e-14  Score=133.09  Aligned_cols=256  Identities=16%  Similarity=0.186  Sum_probs=110.5

Q ss_pred             HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCc
Q 008276          201 SMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMP  280 (571)
Q Consensus       201 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~  280 (571)
                      .+...+.+.|++++|++++.+......+|+                                |...|..+.......+++
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~--------------------------------~~~~~~~~a~La~~~~~~   60 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPD--------------------------------DPEYWRLLADLAWSLGDY   60 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccc--------------------------------cccccccccccccccccc
Confidence            346777788999999998865544322333                                334455566667778899


Q ss_pred             hHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 008276          281 AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQM  360 (571)
Q Consensus       281 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  360 (571)
                      +.|.+.++++...+. -+...+..++.. ...+++++|.+++....+..  ++...+..++..+...++++++..+++.+
T Consensus        61 ~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~  136 (280)
T PF13429_consen   61 DEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKL  136 (280)
T ss_dssp             -------------------------------------------------------------H-HHHTT-HHHHHHHHHHH
T ss_pred             ccccccccccccccc-cccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHH
Confidence            999999999987652 255566666666 68899999999887766543  55666778888899999999999998885


Q ss_pred             C-----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 008276          361 R-----CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP  434 (571)
Q Consensus       361 ~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  434 (571)
                      .     ..+...|..+...+.+.|+.++|++.+++..+  ..|+ ......++..+...|+.+++..+++...+.  .+.
T Consensus       137 ~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~  212 (280)
T PF13429_consen  137 EELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APD  212 (280)
T ss_dssp             HH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HT
T ss_pred             HhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcC
Confidence            4     24677889999999999999999999999999  5665 667888999999999999999999998875  255


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          435 RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFH  496 (571)
Q Consensus       435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  496 (571)
                      ++..+..+..++...|+.++|+..|++. ...| |+.....+..++...|+.++|..+.+++.+
T Consensus       213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred             HHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            6677888999999999999999999998 4455 788888999999999999999999988765

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=1.1e-09  Score=103.73  Aligned_cols=451  Identities=12%  Similarity=0.091  Sum_probs=269.4

Q ss_pred             HHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHH--HH--HHHHcCC
Q 008276           35 NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVL--IR--SYVNNYL  110 (571)
Q Consensus        35 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l--i~--~~~~~~~  110 (571)
                      ++.....+++++|.+.-.+++ ..+ +.+...+.+=+-++.+.+++++|+.+.+.-...  .+++..  =.  ++.+.+.
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil-~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk   94 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKIL-SIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNK   94 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHH-hcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHccc
Confidence            344566688999999999998 555 556777777777999999999999777654431  122222  33  4457889


Q ss_pred             hhHHHHHHHHHHhCCCCCCc-ccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHhCCCHHHHHHHH
Q 008276          111 YYDALHVYKNMSVHGFDPDC-YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYN-LFNGNGLVAMYGKCGCLKEARRVL  188 (571)
Q Consensus       111 ~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~  188 (571)
                      .++|+..++.     ..++. .+...-...|.+.+++++|..+|+.+.+++.+.- ...-..++.+    +-.-.+. +.
T Consensus        95 ~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~~-~~  164 (652)
T KOG2376|consen   95 LDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQVQ-LL  164 (652)
T ss_pred             HHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhHH-HH
Confidence            9999999883     33333 3666666778999999999999999988764322 2222222211    1111121 33


Q ss_pred             ccCCCCCchhHH---HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChh
Q 008276          189 NDMPSKDVVTWN---SMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV  265 (571)
Q Consensus       189 ~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~  265 (571)
                      +..+.....+|.   .....++..|++.+|+++++.....+..-           +..... .-+....-+       ..
T Consensus       165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~-----------l~~~d~-~eEeie~el-------~~  225 (652)
T KOG2376|consen  165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREK-----------LEDEDT-NEEEIEEEL-------NP  225 (652)
T ss_pred             HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh-----------hccccc-chhhHHHHH-------HH
Confidence            444432233333   34566788999999999999884321100           000000 000000000       01


Q ss_pred             hHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH---hccCCchHH--HHHHHHHHHH-----------cC
Q 008276          266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPA---CGDLSALLL--GRKIHRYVER-----------KK  329 (571)
Q Consensus       266 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~~~~~~--a~~~~~~~~~-----------~~  329 (571)
                      .-..|..++...|+.++|..+|...+... .+|........+-   ...-.++..  +...++....           ..
T Consensus       226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~  304 (652)
T KOG2376|consen  226 IRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK  304 (652)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            23346667888999999999999998875 5555333222222   211111111  1111111111           00


Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-hhHHHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCCH--HHHH
Q 008276          330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQD-VVSWTSMISAY--GMSGQGYDAVALFSKMLMSGLCPDS--IAFV  404 (571)
Q Consensus       330 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~  404 (571)
                      -.-....-+.++..|  .+..+.+.++-....... ...+.+++...  ++...+.++.+++...-+.  .|..  ....
T Consensus       305 qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L  380 (652)
T KOG2376|consen  305 QKQAIYRNNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLL  380 (652)
T ss_pred             HHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHH
Confidence            001111112333333  356677777777776532 33444444433  2333578888888887764  3433  3555


Q ss_pred             HHHHHhhcCCCHHHHHHHHH--------HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCHH--
Q 008276          405 SVLSACSHAGLLEEGRYYFK--------IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-----PMEPNER--  469 (571)
Q Consensus       405 ~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~--  469 (571)
                      ..++.....|+++.|.+++.        .+.+. +..|  .+...++..+.+.++.+.|..++.+.     ...+...  
T Consensus       381 ~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l  457 (652)
T KOG2376|consen  381 LRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIAL  457 (652)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHH
Confidence            56677888999999999998        44433 3334  44456777888888776676666654     1122222  


Q ss_pred             --HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 008276          470 --IWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKF  527 (571)
Q Consensus       470 --~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  527 (571)
                        ++.-+...-.+.|+-++|..+++++.+.+|++..+...++.+|++.. .+.|..+-+.
T Consensus       458 ~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~  516 (652)
T KOG2376|consen  458 LSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSKK  516 (652)
T ss_pred             HhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhhc
Confidence              33333444457899999999999999999999999999999988764 5666665443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.48  E-value=8.9e-11  Score=102.75  Aligned_cols=288  Identities=11%  Similarity=0.032  Sum_probs=202.7

Q ss_pred             cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCC-c--hhHHHHHHHHHHhCCCHHHH
Q 008276          108 NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDY-N--LFNGNGLVAMYGKCGCLKEA  184 (571)
Q Consensus       108 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~-~--~~~~~~l~~~~~~~g~~~~A  184 (571)
                      +.+.++|+++|-+|.+.. +-+..+-.+|.+.|.+.|..+.|+++...+..+---+ +  ....-.|.+-|...|-+|.|
T Consensus        48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            457888888888887731 1223334566677888888888888888887642111 1  22344567788899999999


Q ss_pred             HHHHccCCC-C--CchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCC
Q 008276          185 RRVLNDMPS-K--DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDN  261 (571)
Q Consensus       185 ~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~  261 (571)
                      +.+|..+.+ +  -......|+..|-...+|++|+++-+++.+.+.++...-    |                       
T Consensus       127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e----I-----------------------  179 (389)
T COG2956         127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE----I-----------------------  179 (389)
T ss_pred             HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH----H-----------------------
Confidence            999998886 3  234677899999999999999999999887655443221    1                       


Q ss_pred             CChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 008276          262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV  341 (571)
Q Consensus       262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  341 (571)
                        ...|.-|...+....+.++|..++.+..+.+ +.....-..+.+.....|++..|.+.++.+.+.+...-..+...|.
T Consensus       180 --AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~  256 (389)
T COG2956         180 --AQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY  256 (389)
T ss_pred             --HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence              2457777888888889999999999988764 2233333455566778889999999999988887666667777888


Q ss_pred             HHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc---CCCH
Q 008276          342 DMYAKCGSLTEARTVFDQMRC--QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH---AGLL  416 (571)
Q Consensus       342 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~---~~~~  416 (571)
                      .+|...|+.++....+..+.+  ++...-..+.+.-....-.+.|..++.+-+.  -+|+...+..++.....   .|..
T Consensus       257 ~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~  334 (389)
T COG2956         257 ECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRA  334 (389)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccch
Confidence            888888888888888877764  4555555555555555556667666666555  46888888888776533   2344


Q ss_pred             HHHHHHHHHHHH
Q 008276          417 EEGRYYFKIMTE  428 (571)
Q Consensus       417 ~~a~~~~~~~~~  428 (571)
                      .+-...++.|..
T Consensus       335 k~sL~~lr~mvg  346 (389)
T COG2956         335 KESLDLLRDMVG  346 (389)
T ss_pred             hhhHHHHHHHHH
Confidence            555555555543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.48  E-value=7.4e-11  Score=103.26  Aligned_cols=301  Identities=13%  Similarity=0.098  Sum_probs=221.1

Q ss_pred             CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHH
Q 008276          209 NGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL  288 (571)
Q Consensus       209 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  288 (571)
                      +++.++|.++|-+|.+.    |..|                              ..+.-+|.+.|-+.|..|+|+.+-.
T Consensus        48 s~Q~dKAvdlF~e~l~~----d~~t------------------------------~e~~ltLGnLfRsRGEvDRAIRiHQ   93 (389)
T COG2956          48 SNQPDKAVDLFLEMLQE----DPET------------------------------FEAHLTLGNLFRSRGEVDRAIRIHQ   93 (389)
T ss_pred             hcCcchHHHHHHHHHhc----Cchh------------------------------hHHHHHHHHHHHhcchHHHHHHHHH
Confidence            56788899999888762    2222                              3456678888889999999999988


Q ss_pred             HHHHCCCCCCH------HHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 008276          289 QMEVHGIEPNA------ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC  362 (571)
Q Consensus       289 ~m~~~g~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  362 (571)
                      .+.++   ||.      ...-.+..-|...|-+|.|+.+|..+.+.+ ..-......|+..|-...+|++|.++-+++.+
T Consensus        94 ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k  169 (389)
T COG2956          94 TLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVK  169 (389)
T ss_pred             HHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            88763   432      233345566788899999999999888755 34455667788999999999999998887765


Q ss_pred             CCh--------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 008276          363 QDV--------VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV  433 (571)
Q Consensus       363 ~~~--------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  433 (571)
                      -+.        ..|.-|...+....+.+.|..++.+..+.  .|+.. .-..+.+.....|+++.|.+.|+.+.+. +..
T Consensus       170 ~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~  246 (389)
T COG2956         170 LGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPE  246 (389)
T ss_pred             cCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChH
Confidence            222        24666667777788999999999999885  34333 3345667788899999999999999875 322


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 008276          434 PRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY  512 (571)
Q Consensus       434 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  512 (571)
                      --..+...|..+|...|+.++.+..+.++ ...+....-..+........-.+.|...+.+-+...|.-...|..+-.-+
T Consensus       247 yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l  326 (389)
T COG2956         247 YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHL  326 (389)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhh
Confidence            23467788999999999999999999877 44555555555555555666677888888888888886554444443333


Q ss_pred             Hh--cCCHHHHHHHHHHHHhCCCCCCCceE-EEECCEEEEE
Q 008276          513 AK--AGRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQVQII  550 (571)
Q Consensus       513 ~~--~g~~~~A~~~~~~m~~~~~~~~~~~~-~~~~~~~~~~  550 (571)
                      ..  -|+..+.+..++.|....++..|.+. -..+...|+|
T Consensus       327 ~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l  367 (389)
T COG2956         327 ADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL  367 (389)
T ss_pred             ccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence            33  46688889999999999999999888 6666666665

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.48  E-value=8.7e-09  Score=98.62  Aligned_cols=143  Identities=11%  Similarity=0.103  Sum_probs=74.3

Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HhhcCCCHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 008276          380 QGYDAVALFSKMLMSGLCPDSIAFVSVLS--ACSHAGLLEEGRYYFKIMTEQYKLVPRI--EHFACLVDLLGRAGKVEEA  455 (571)
Q Consensus       380 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A  455 (571)
                      ..+.|..+|++.++ |++|...-+.-|+-  .-.+.|-...|..+++++..  ++++..  ..|+..|.-....=.+...
T Consensus       565 klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~T  641 (835)
T KOG2047|consen  565 KLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRT  641 (835)
T ss_pred             CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCccc
Confidence            45566666666665 45544332211211  11233555556666666544  333322  3444444433332233333


Q ss_pred             HHHHHhC-CCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHHHHhcCCHHHHHHHH
Q 008276          456 YDLIKQM-PMEPNERIWGSLVA---ACCLYSNMDIGILAADHIFHLAPN--QSGYYVLLSNIYAKAGRWGDVKRVR  525 (571)
Q Consensus       456 ~~~~~~~-~~~p~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~  525 (571)
                      ..+++++ ..-|+...-...++   .-.+.|..++|..+|.-..++-++  +...|...=..-.+.|+-+--.+.+
T Consensus       642 R~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML  717 (835)
T KOG2047|consen  642 REIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML  717 (835)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence            4444444 23344443333332   234678888898888888886633  4557888877788889855444444

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.47  E-value=2.7e-10  Score=102.99  Aligned_cols=296  Identities=10%  Similarity=0.042  Sum_probs=173.4

Q ss_pred             HHHHHHHHH--HcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 008276           98 FNVLIRSYV--NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMY  175 (571)
Q Consensus        98 ~~~li~~~~--~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~  175 (571)
                      -..+..++.  -.|+|.+|.++..+-.+.+-. ....|.....+.-..|+.+.+-+++.+..+.--.++....-+..+..
T Consensus        85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll  163 (400)
T COG3071          85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL  163 (400)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence            334445553  368999999999998777533 33446666677788999999999999998864466677777888889


Q ss_pred             HhCCCHHHHHHHHccCCC---CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHH
Q 008276          176 GKCGCLKEARRVLNDMPS---KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSV  252 (571)
Q Consensus       176 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a  252 (571)
                      ...|+++.|..-++++.+   .+.........+|.+.|++.....++..|.+.|.-.|...-..                
T Consensus       164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l----------------  227 (400)
T COG3071         164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL----------------  227 (400)
T ss_pred             HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH----------------
Confidence            999999999888776654   5778889999999999999999999999999887655432100                


Q ss_pred             HHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCC
Q 008276          253 KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP  332 (571)
Q Consensus       253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  332 (571)
                                ...+|+.++.-....+..+.-...|+..-.. .+-+...-..++.-+...|+.++|.++..+..+.+..|
T Consensus       228 ----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~  296 (400)
T COG3071         228 ----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP  296 (400)
T ss_pred             ----------HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh
Confidence                      0123333333333333333333333332211 12233333334444444444444444444444444333


Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008276          333 NLRLENALVDMYAKCGSLTEARTVFDQMR---CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA  409 (571)
Q Consensus       333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~  409 (571)
                      +...    .-.+.+-++.+.-.+..+.-.   ..++..+..|...|.+.+.+.+|.+.|+...+  ..|+..+|+.+..+
T Consensus       297 ~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~  370 (400)
T COG3071         297 RLCR----LIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADA  370 (400)
T ss_pred             hHHH----HHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHH
Confidence            3111    111222333333222222221   12334455555555556666666666665555  45555666666666


Q ss_pred             hhcCCCHHHHHHHHHHHH
Q 008276          410 CSHAGLLEEGRYYFKIMT  427 (571)
Q Consensus       410 ~~~~~~~~~a~~~~~~~~  427 (571)
                      +...|+..+|.+..++..
T Consensus       371 ~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         371 LDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             HHHcCChHHHHHHHHHHH
Confidence            666666666665555544

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.46  E-value=3.6e-11  Score=109.14  Aligned_cols=199  Identities=13%  Similarity=0.066  Sum_probs=165.0

Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008276          332 PNLRLENALVDMYAKCGSLTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS  408 (571)
Q Consensus       332 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~  408 (571)
                      .....+..+...+...|++++|...+++..+  | +...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~  107 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT  107 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence            3355667778888899999999999987754  3 45678888889999999999999999998853 334567778888


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 008276          409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDI  486 (571)
Q Consensus       409 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~  486 (571)
                      .+...|++++|...++..............+..+...+...|++++|...+++. ...| +...+..+...+...|++++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence            899999999999999999874222334567778889999999999999999987 4444 56678888899999999999


Q ss_pred             HHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276          487 GILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       487 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                      |...++++.+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus       188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            999999999998888888999999999999999999998887543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.45  E-value=3.3e-10  Score=102.41  Aligned_cols=278  Identities=13%  Similarity=0.003  Sum_probs=123.8

Q ss_pred             hCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCC----CChhhHHHHHHHHHHcCCchHH
Q 008276          208 QNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDN----KNLVSWNVMIAVYANNSMPAEA  283 (571)
Q Consensus       208 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A  283 (571)
                      -.|+|.+|+++..+-.+.+-.|-   .+.++.+-+.....+.+.+...+.+..+    ++...+-+........|+++.|
T Consensus        96 ~eG~~~qAEkl~~rnae~~e~p~---l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA  172 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEHGEQPV---LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA  172 (400)
T ss_pred             hcCcHHHHHHHHHHhhhcCcchH---HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence            37899999999988777665442   2222222222222224444444433322    2233344444445555555555


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCCh-------hHHHHHHHHHHhcCCHHHHHHH
Q 008276          284 VDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNL-------RLENALVDMYAKCGSLTEARTV  356 (571)
Q Consensus       284 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~  356 (571)
                      ..-++++.+.+ +-+.........+|.+.|++.....++..+.+.+.-.+.       .++..+++-....+..+.-...
T Consensus       173 ~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~  251 (400)
T COG3071         173 RENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW  251 (400)
T ss_pred             HHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence            55555554443 223344444445555555555555555555554433222       1233333333333333333334


Q ss_pred             HhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 008276          357 FDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLV  433 (571)
Q Consensus       357 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  433 (571)
                      ++..+.   .++..-..++.-+.+.|+.++|.++.++..+.+..|+-.    ..-.+.+.++...-++..+.-.+.++..
T Consensus       252 W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~  327 (400)
T COG3071         252 WKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPED  327 (400)
T ss_pred             HHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCC
Confidence            444432   234444444444445555555555554444444333311    1112233444444444444433322222


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          434 PRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIWGSLVAACCLYSNMDIGILAADHIF  495 (571)
Q Consensus       434 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  495 (571)
                      |  ..+.+|...|.+.+.|.+|.+.|+.. ...|+..+|+.+..++.+.|+..+|.+..++..
T Consensus       328 p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         328 P--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             h--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            2  33444444444444455554444433 444444444444444444444444444444444

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.45  E-value=3.8e-10  Score=111.54  Aligned_cols=499  Identities=12%  Similarity=0.050  Sum_probs=291.2

Q ss_pred             hhhccccccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHH
Q 008276           20 LVLSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN   99 (571)
Q Consensus        20 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~   99 (571)
                      ...++.|+..++..++.-|+.-|+.+.|- +|.-|. ....+.+...++.++....++|+.+.+.       +|...+|.
T Consensus        17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~-~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt   87 (1088)
T KOG4318|consen   17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFME-IKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYT   87 (1088)
T ss_pred             HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhh-cccccccchhHHHHHhcccccccccCCC-------CCchhHHH
Confidence            44678888888888888888888888887 888777 6666777777888888877777776665       67888999


Q ss_pred             HHHHHHHHcCChhH---HHHHHHHH----HhCC-----------------CCCCccc----------HHHHHHHhh----
Q 008276          100 VLIRSYVNNYLYYD---ALHVYKNM----SVHG-----------------FDPDCYT----------YPCVLKACS----  141 (571)
Q Consensus       100 ~li~~~~~~~~~~~---A~~~~~~m----~~~g-----------------~~p~~~~----------~~~li~~~~----  141 (571)
                      .|..+|.+.|+...   +.+.++..    ...|                 .-||..+          |..+++...    
T Consensus        88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv  167 (1088)
T KOG4318|consen   88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV  167 (1088)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence            99999999998654   22212211    1122                 1222221          111122111    


Q ss_pred             --cCCCh-----------HHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhCCCHHHHHHHHccCCCC----CchhHHHHH
Q 008276          142 --GSNSL-----------LVGLQIHCSVVKVGL-DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK----DVVTWNSMV  203 (571)
Q Consensus       142 --~~~~~-----------~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li  203 (571)
                        ..+.+           .-.+++.+ |.+.+. .++..++..++..-...|+.+.|..++.+|.+.    +..-|-.|+
T Consensus       168 sa~~~p~~vfLrqnv~~ntpvekLl~-~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl  246 (1088)
T KOG4318|consen  168 SAWNAPFQVFLRQNVVDNTPVEKLLN-MCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLL  246 (1088)
T ss_pred             ccccchHHHHHHHhccCCchHHHHHH-HHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhh
Confidence              11111           11112222 222222 488889999999999999999999999999874    222333344


Q ss_pred             HHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCcc-----------------------------------
Q 008276          204 AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPEN-----------------------------------  248 (571)
Q Consensus       204 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-----------------------------------  248 (571)
                      -+   .++...+..++.-|...|+.|+..|+..-+..+...+...                                   
T Consensus       247 ~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~  323 (1088)
T KOG4318|consen  247 LG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLR  323 (1088)
T ss_pred             hc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHH
Confidence            33   7888888899999999999999999988777776633222                                   


Q ss_pred             -----------------------------------------------------------HHHHHHHHhhCCC--------
Q 008276          249 -----------------------------------------------------------VLSVKEMFLKLDN--------  261 (571)
Q Consensus       249 -----------------------------------------------------------~~~a~~~~~~~~~--------  261 (571)
                                                                                 ...+...|.+...        
T Consensus       324 ~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~  403 (1088)
T KOG4318|consen  324 KSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYY  403 (1088)
T ss_pred             HHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence                                                                       0011111111110        


Q ss_pred             -------------------------CCh----------------------------hhHHHHHHHHHHcCCchHHHHHHH
Q 008276          262 -------------------------KNL----------------------------VSWNVMIAVYANNSMPAEAVDLYL  288 (571)
Q Consensus       262 -------------------------~~~----------------------------~~~~~l~~~~~~~g~~~~A~~~~~  288 (571)
                                               ||.                            ..-+.++..+++.-+..+++..-+
T Consensus       404 ~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~e  483 (1088)
T KOG4318|consen  404 AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEE  483 (1088)
T ss_pred             HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                     000                            011223334444444444443333


Q ss_pred             HHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----
Q 008276          289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK--LQPNLRLENALVDMYAKCGSLTEARTVFDQMRC----  362 (571)
Q Consensus       289 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----  362 (571)
                      +....- -+  ..|..+++-+......+.|..+.+++....  +..+..-+..+.+.+.+.+....+..++.++.+    
T Consensus       484 kye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n  560 (1088)
T KOG4318|consen  484 KYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAEN  560 (1088)
T ss_pred             HHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhC
Confidence            322211 11  467778888888888888888887776432  344556677788888888888888888888774    


Q ss_pred             -CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC------------------------------CCCCHHHHHHHHHH-
Q 008276          363 -QD-VVSWTSMISAYGMSGQGYDAVALFSKMLMSG------------------------------LCPDSIAFVSVLSA-  409 (571)
Q Consensus       363 -~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g------------------------------~~p~~~~~~~l~~~-  409 (571)
                       ++ ..++..++......|+.+..-++++-+...|                              .+|.+.....+.+. 
T Consensus       561 ~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv  640 (1088)
T KOG4318|consen  561 EPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLV  640 (1088)
T ss_pred             CchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHH
Confidence             21 1223334444445555554444444433322                              22322222222221 


Q ss_pred             --------------------hhcCCCHHHHHHHHHHHH--HhcC---------CCC---------CHHHHHHHHHHHHhc
Q 008276          410 --------------------CSHAGLLEEGRYYFKIMT--EQYK---------LVP---------RIEHFACLVDLLGRA  449 (571)
Q Consensus       410 --------------------~~~~~~~~~a~~~~~~~~--~~~~---------~~~---------~~~~~~~l~~~~~~~  449 (571)
                                          |.+.|++.++.++.+---  -+++         +.|         +.....-|+..|.+.
T Consensus       641 ~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~  720 (1088)
T KOG4318|consen  641 YKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEE  720 (1088)
T ss_pred             HhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhh
Confidence                                223333333332221100  0000         000         001122366788899


Q ss_pred             CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhC---CCCchhHHHHHHHHHhcCCHHHHHH
Q 008276          450 GKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS---NMDIGILAADHIFHLA---PNQSGYYVLLSNIYAKAGRWGDVKR  523 (571)
Q Consensus       450 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~  523 (571)
                      |+++.|..+|.++.+.|+..+...|...+.+..   +.-++....+++.+..   |.+...|.-.+....+....+.|.+
T Consensus       721 g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk  800 (1088)
T KOG4318|consen  721 GRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKK  800 (1088)
T ss_pred             hHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHH
Confidence            999999999999988888888888887776533   4556666666666655   3334445555555556666668899


Q ss_pred             HHHHHHhCCCC
Q 008276          524 VRKFMNSKGIK  534 (571)
Q Consensus       524 ~~~~m~~~~~~  534 (571)
                      ++.+..++...
T Consensus       801 ~f~r~eeq~~v  811 (1088)
T KOG4318|consen  801 CFERLEEQLTV  811 (1088)
T ss_pred             HHHHHHHccCC
Confidence            99998887543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.42  E-value=2.3e-09  Score=104.81  Aligned_cols=369  Identities=12%  Similarity=0.095  Sum_probs=247.6

Q ss_pred             hCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCC---CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 008276          159 VGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS---KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMA  235 (571)
Q Consensus       159 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~  235 (571)
                      ..+.-+...|..|.-+...+|+++.+.+.|++...   .....|+.+...+...|.-..|..+++.-......|+..+.-
T Consensus       317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~  396 (799)
T KOG4162|consen  317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL  396 (799)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence            34566788888888889999999999999988765   355678888889999999899999988776544345444433


Q ss_pred             HHHH-HhcCCC-C--ccHHHHHHHHhhCC----CCChhhHHHHHHHHHHc-----------CCchHHHHHHHHHHHCC-C
Q 008276          236 SLLP-SVTNTS-P--ENVLSVKEMFLKLD----NKNLVSWNVMIAVYANN-----------SMPAEAVDLYLQMEVHG-I  295 (571)
Q Consensus       236 ~ll~-~~~~~~-~--~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~m~~~g-~  295 (571)
                      .+.. .|...- .  ..++-|.+..+...    ......|-.+.-+|...           ....++++.+++..+.+ -
T Consensus       397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~  476 (799)
T KOG4162|consen  397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT  476 (799)
T ss_pred             HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence            3333 333221 1  11333333333111    23344555555555432           12446777777776654 2


Q ss_pred             CCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC---------
Q 008276          296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--QD---------  364 (571)
Q Consensus       296 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~---------  364 (571)
                      .|+...|..+  -|+..++++.|.+..++..+.+...+...|..|.-.+...+++.+|+.+.+....  ++         
T Consensus       477 dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~  554 (799)
T KOG4162|consen  477 DPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI  554 (799)
T ss_pred             CchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence            3433333333  3556678888999988888886678888888888888888888888888775542  11         


Q ss_pred             ------------hhHHHHHHHHHH------h-----------------cCChHHHHHHHHHHH--------HCC------
Q 008276          365 ------------VVSWTSMISAYG------M-----------------SGQGYDAVALFSKML--------MSG------  395 (571)
Q Consensus       365 ------------~~~~~~li~~~~------~-----------------~~~~~~a~~~~~~m~--------~~g------  395 (571)
                                  ..|...++..+-      .                 ..+..++.+..+.+.        ..|      
T Consensus       555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp  634 (799)
T KOG4162|consen  555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP  634 (799)
T ss_pred             hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence                        111222221111      0                 011111222111110        011      


Q ss_pred             ---CCC--C------HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 008276          396 ---LCP--D------SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-P  463 (571)
Q Consensus       396 ---~~p--~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~  463 (571)
                         +.|  +      ...|......+.+.+..++|...+.+...  ..+.....|......+...|.+++|.+.|... .
T Consensus       635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~  712 (799)
T KOG4162|consen  635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA  712 (799)
T ss_pred             cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence               111  1      12344556667788888999988888865  34556677888888899999999999998877 7


Q ss_pred             CCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276          464 MEP-NERIWGSLVAACCLYSNMDIGIL--AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       464 ~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                      +.| ++.+..++...+.+.|+...|..  ++..+.+++|.++.+|..++..+.+.|+.++|.+.|....+-
T Consensus       713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence            777 56788999999999999998888  999999999999999999999999999999999999987653

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.41  E-value=3.9e-10  Score=109.45  Aligned_cols=236  Identities=14%  Similarity=0.107  Sum_probs=152.0

Q ss_pred             hhHHHHHHHHHHcCCchHHHHHHHHHHHC-----C-CCCCHHHH-HHHHHHhccCCchHHHHHHHHHHHHc-----CCCC
Q 008276          265 VSWNVMIAVYANNSMPAEAVDLYLQMEVH-----G-IEPNAISV-ASVLPACGDLSALLLGRKIHRYVERK-----KLQP  332 (571)
Q Consensus       265 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g-~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~  332 (571)
                      .+...+...|...|++++|..+++...+.     | ..|...+. ..+...|...+++++|..+|+.+...     | ..
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G-~~  278 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG-ED  278 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC-CC
Confidence            34455788889999999999988887653     1 01222111 12333344444444444444444321     1 00


Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCC-CCCHH-HHHH
Q 008276          333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM-----SGL-CPDSI-AFVS  405 (571)
Q Consensus       333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~-~p~~~-~~~~  405 (571)
                      ++.                            -..+++.|...|.+.|++++|..++++..+     .|. .|... .++.
T Consensus       279 h~~----------------------------va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~  330 (508)
T KOG1840|consen  279 HPA----------------------------VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSE  330 (508)
T ss_pred             CHH----------------------------HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence            000                            112445555556666666655555554432     122 22222 4666


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhcC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCC-CHH
Q 008276          406 VLSACSHAGLLEEGRYYFKIMTEQYK--LVPR----IEHFACLVDLLGRAGKVEEAYDLIKQM---------PMEP-NER  469 (571)
Q Consensus       406 l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p-~~~  469 (571)
                      +...|...+++++|..+++...+.+.  +.++    ..+++.|...|...|++++|.++++++         +..+ ...
T Consensus       331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~  410 (508)
T KOG1840|consen  331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK  410 (508)
T ss_pred             HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence            77778888999999988887665432  2222    257889999999999999999999877         1122 245


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          470 IWGSLVAACCLYSNMDIGILAADHIFHL----APN---QSGYYVLLSNIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       470 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  529 (571)
                      .++.+...|.+.+++.+|.++|.+...+    +|+   ...+|..|+.+|...|++++|.++.+...
T Consensus       411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            6788889999999999999999987653    344   45578999999999999999999988876

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=5.9e-09  Score=94.54  Aligned_cols=274  Identities=9%  Similarity=-0.009  Sum_probs=196.3

Q ss_pred             CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHH
Q 008276          194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAV  273 (571)
Q Consensus       194 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~  273 (571)
                      .|+.....+...+...|+.++|+..|++....  .|+..+                                ........
T Consensus       230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~--------------------------------~MD~Ya~L  275 (564)
T KOG1174|consen  230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVE--------------------------------AMDLYAVL  275 (564)
T ss_pred             ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhh--------------------------------hHHHHHHH
Confidence            36677778888888888888888888877642  333211                                11111223


Q ss_pred             HHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 008276          274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA  353 (571)
Q Consensus       274 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  353 (571)
                      +.+.|+++....+...+.... +-+...|..-........+++.|..+-+..++.+ +.+...+-.-...+...+++++|
T Consensus       276 L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A  353 (564)
T KOG1174|consen  276 LGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQA  353 (564)
T ss_pred             HHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHH
Confidence            456677777777766665421 1222233333334455677888888887777665 44555555555677888999999


Q ss_pred             HHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHhh-cCCCHHHHHHHHHHHHH
Q 008276          354 RTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVL-SACS-HAGLLEEGRYYFKIMTE  428 (571)
Q Consensus       354 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~  428 (571)
                      .-.|+....   -+..+|.-|+..|...|.+.+|..+-+..... ++.+..+...+. ..|. ....-++|..++++..+
T Consensus       354 ~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~  432 (564)
T KOG1174|consen  354 VIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK  432 (564)
T ss_pred             HHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc
Confidence            999987763   37789999999999999999999888876664 455666666552 3332 33445789999988763


Q ss_pred             hcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 008276          429 QYKLVPRI-EHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV  506 (571)
Q Consensus       429 ~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  506 (571)
                         +.|+- ...+.+.+.+...|+.++++.++++. ...||....+.|...+...+.+++|+..|..+++++|.+..+..
T Consensus       433 ---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~  509 (564)
T KOG1174|consen  433 ---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLR  509 (564)
T ss_pred             ---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHH
Confidence               45654 55678889999999999999999987 66789999999999999999999999999999999998765443


Q ss_pred             H
Q 008276          507 L  507 (571)
Q Consensus       507 ~  507 (571)
                      .
T Consensus       510 G  510 (564)
T KOG1174|consen  510 G  510 (564)
T ss_pred             H
Confidence            3

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.39  E-value=1.1e-08  Score=91.02  Aligned_cols=439  Identities=15%  Similarity=0.080  Sum_probs=262.9

Q ss_pred             HHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhHHHHHHHHHHcCCh
Q 008276           35 NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFFNVLIRSYVNNYLY  111 (571)
Q Consensus        35 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~  111 (571)
                      +.-+...+|+..|+.+++-.. ..+-.-...+-.=+..++-..|++++|...+..+..   ++...+-.|.-++.-.|.+
T Consensus        29 Ledfls~rDytGAislLefk~-~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKL-NLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhh-ccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence            344566788999998888665 444332222333345566688999999999987754   5666777777777888999


Q ss_pred             hHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccC
Q 008276          112 YDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM  191 (571)
Q Consensus       112 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  191 (571)
                      .+|..+-.+..+     ++-.-..+.....+.++-++-..+.+.+...     ..-.-+|..+....-.+.+|+.++.++
T Consensus       108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv  177 (557)
T KOG3785|consen  108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV  177 (557)
T ss_pred             HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            999888766533     2333344555555777777666666655432     233345666666667899999999998


Q ss_pred             CC--CCchhHHHH-HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcC----CCCccHHHHHHHHhhCCCCCh
Q 008276          192 PS--KDVVTWNSM-VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN----TSPENVLSVKEMFLKLDNKNL  264 (571)
Q Consensus       192 ~~--~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~~~a~~~~~~~~~~~~  264 (571)
                      ..  |+-...|.- .-+|.+..-++-+.+++......  -||+ |+..-+.+|..    .+....++..++.+.+.+.  
T Consensus       178 L~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--  252 (557)
T KOG3785|consen  178 LQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--  252 (557)
T ss_pred             HhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--
Confidence            76  444455543 45667788888888888777653  3432 33333333322    1222233344444444321  


Q ss_pred             hhHHHHHHHHHHc-----CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHH
Q 008276          265 VSWNVMIAVYANN-----SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA  339 (571)
Q Consensus       265 ~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  339 (571)
                         ...+.-+++.     .+-+.|++++-.+.+.  .|...  ..++--|.+.++..+|..+.+++.-  ..|-......
T Consensus       253 ---~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEAR--lNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKg  323 (557)
T KOG3785|consen  253 ---YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEAR--LNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKG  323 (557)
T ss_pred             ---chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHhh--hhheeeecccccHHHHHHHHhhcCC--CChHHHHHHH
Confidence               1122223333     2446677776665542  33322  2334456777888877776654331  1122222222


Q ss_pred             HHHHH-----HhcCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008276          340 LVDMY-----AKCGSLTEARTVFDQMRC-----QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA  409 (571)
Q Consensus       340 l~~~~-----~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~  409 (571)
                      ++.+-     .....+.-|.+.|.-.-+     ..+.--.++..++.-..++++++-++.....-=...|...| .+.++
T Consensus       324 vv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQA  402 (557)
T KOG3785|consen  324 VVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQA  402 (557)
T ss_pred             HHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHH
Confidence            22111     111234556666655443     22333556666666677788888888887774222233333 46788


Q ss_pred             hhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHH
Q 008276          410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSL-VAACCLYSNMDIGI  488 (571)
Q Consensus       410 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~  488 (571)
                      .+..|++.+|+++|-.+... .++.+..-...|.++|.+.++.+.|.+++-++.-..+..+...+ ..-|.+.+.+--|-
T Consensus       403 k~atgny~eaEelf~~is~~-~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaa  481 (557)
T KOG3785|consen  403 KLATGNYVEAEELFIRISGP-EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAA  481 (557)
T ss_pred             HHHhcChHHHHHHHhhhcCh-hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            88889999999988777542 22333333355678888999999999988888533344444444 45688888888888


Q ss_pred             HHHHHHHhhCCC
Q 008276          489 LAADHIFHLAPN  500 (571)
Q Consensus       489 ~~~~~~~~~~p~  500 (571)
                      +.|+.+..++|.
T Consensus       482 KAFd~lE~lDP~  493 (557)
T KOG3785|consen  482 KAFDELEILDPT  493 (557)
T ss_pred             HhhhHHHccCCC
Confidence            888888888873

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.38  E-value=1.3e-07  Score=90.94  Aligned_cols=450  Identities=12%  Similarity=0.108  Sum_probs=259.9

Q ss_pred             cCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---------------
Q 008276           28 LLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN---------------   92 (571)
Q Consensus        28 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------------   92 (571)
                      .-.|...+.-..+.+-++.+.+++.+.+     +.++...+-.|..+++.++.++|.+.+..+..               
T Consensus       138 ~rIW~lyl~Fv~~~~lPets~rvyrRYL-----k~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~ql  212 (835)
T KOG2047|consen  138 DRIWDLYLKFVESHGLPETSIRVYRRYL-----KVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQL  212 (835)
T ss_pred             ccchHHHHHHHHhCCChHHHHHHHHHHH-----hcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhH
Confidence            3456666666777777777777777776     33445567777777777888877777765532               


Q ss_pred             -----------C--------------------C--hhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 008276           93 -----------K--------------------N--VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKA  139 (571)
Q Consensus        93 -----------~--------------------~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  139 (571)
                                 |                    |  ...|++|.+.|++.|.+++|.++|++....  ..+..-|..+.++
T Consensus       213 w~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~  290 (835)
T KOG2047|consen  213 WLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDA  290 (835)
T ss_pred             HHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHH
Confidence                       1                    1  125778888888888888888888877654  2344445555544


Q ss_pred             hhcCC----------------------ChHHHHHHHHHHHHhC-----------CCCchhHHHHHHHHHHhCCCHHHHHH
Q 008276          140 CSGSN----------------------SLLVGLQIHCSVVKVG-----------LDYNLFNGNGLVAMYGKCGCLKEARR  186 (571)
Q Consensus       140 ~~~~~----------------------~~~~a~~~~~~~~~~g-----------~~~~~~~~~~l~~~~~~~g~~~~A~~  186 (571)
                      |+.-.                      +++....-++.+...+           -+-++..|..-+..  ..|+..+-..
T Consensus       291 Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~  368 (835)
T KOG2047|consen  291 YAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQIN  368 (835)
T ss_pred             HHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHH
Confidence            43211                      1111222222222211           01122222222221  2344444444


Q ss_pred             HHccCCC-------C--CchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcC--CCCccHHHHHHH
Q 008276          187 VLNDMPS-------K--DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN--TSPENVLSVKEM  255 (571)
Q Consensus       187 ~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~~~a~~~  255 (571)
                      .|.+...       +  -...|-.+...|-..|+.+.|..+|++..+...+ .......+-..|+.  ......+.|.++
T Consensus       369 tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~-~v~dLa~vw~~waemElrh~~~~~Al~l  447 (835)
T KOG2047|consen  369 TYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK-TVEDLAEVWCAWAEMELRHENFEAALKL  447 (835)
T ss_pred             HHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc-chHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            4443321       1  1235677777778888888888888877654322 22222222222221  122235556555


Q ss_pred             HhhCC---------------C------CChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCc
Q 008276          256 FLKLD---------------N------KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA  314 (571)
Q Consensus       256 ~~~~~---------------~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~  314 (571)
                      ++...               +      .+...|...++.--..|-++....+|+.+.+..+....... ....-+-...-
T Consensus       448 m~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~-NyAmfLEeh~y  526 (835)
T KOG2047|consen  448 MRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIII-NYAMFLEEHKY  526 (835)
T ss_pred             HHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhhHH
Confidence            55443               1      13335666667667777888888888888776533222221 11122334455


Q ss_pred             hHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHh---cCCHHHHHHHHhhCCC--CChhH---HHHHHHHHHhcCChHHHH
Q 008276          315 LLLGRKIHRYVERKKLQPNL-RLENALVDMYAK---CGSLTEARTVFDQMRC--QDVVS---WTSMISAYGMSGQGYDAV  385 (571)
Q Consensus       315 ~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~a~~~~~~~~~--~~~~~---~~~li~~~~~~~~~~~a~  385 (571)
                      ++++.++|+.-+..=..|+. ..|+..+.-+.+   ..+++.|..+|++..+  |....   |-.....--+.|-...|+
T Consensus       527 feesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~am  606 (835)
T KOG2047|consen  527 FEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAM  606 (835)
T ss_pred             HHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            77777777765543223443 456655544433   3479999999999886  42221   222222223568888999


Q ss_pred             HHHHHHHHCCCCCCHH--HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHH
Q 008276          386 ALFSKMLMSGLCPDSI--AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE---HFACLVDLLGRAGKVEEAYDLIK  460 (571)
Q Consensus       386 ~~~~~m~~~g~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~  460 (571)
                      ++|++.... +++...  .|+..|.--...=-+.....+|++..+.   -|+..   ..--+.+.-.+.|..+.|..++.
T Consensus       607 siyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~---Lp~~~~r~mclrFAdlEtklGEidRARaIya  682 (835)
T KOG2047|consen  607 SIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES---LPDSKAREMCLRFADLETKLGEIDRARAIYA  682 (835)
T ss_pred             HHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            999997664 666543  7888887655555567788999999875   45543   34445666788999999999987


Q ss_pred             hC--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008276          461 QM--PMEP--NERIWGSLVAACCLYSNMDIGILAAD  492 (571)
Q Consensus       461 ~~--~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~  492 (571)
                      -.  -.+|  +...|.+.=.--.++|+-+.-.++++
T Consensus       683 ~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLR  718 (835)
T KOG2047|consen  683 HGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLR  718 (835)
T ss_pred             hhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            65  2234  66778888777889999554444444

>PRK12370 invasion protein regulator; Provisional

Probab=99.35  E-value=5.1e-10  Score=114.11  Aligned_cols=242  Identities=16%  Similarity=0.065  Sum_probs=178.1

Q ss_pred             CchHHHHHHHHHHHCCCCCC-HHHHHHHHHHhc---------cCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 008276          279 MPAEAVDLYLQMEVHGIEPN-AISVASVLPACG---------DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG  348 (571)
Q Consensus       279 ~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  348 (571)
                      ++++|.+.|++..+.  .|+ ...+..+..++.         ..+++++|...++.+.+.+ +.+...+..+..++...|
T Consensus       276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g  352 (553)
T PRK12370        276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS  352 (553)
T ss_pred             HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence            467899999998875  454 344444443332         3355889999999999886 556778888888899999


Q ss_pred             CHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHH
Q 008276          349 SLTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGRYYFK  424 (571)
Q Consensus       349 ~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~  424 (571)
                      ++++|...|++..+  | +...+..+...+...|++++|+..++++.+  ..|+.. .+..++..+...|++++|...++
T Consensus       353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~  430 (553)
T PRK12370        353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD  430 (553)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence            99999999999775  4 456788899999999999999999999999  455533 33334445667899999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhC---C
Q 008276          425 IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNER-IWGSLVAACCLYSNMDIGILAADHIFHLA---P  499 (571)
Q Consensus       425 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p  499 (571)
                      ++.+. ..+.++..+..+..++...|+.++|...+.++ ...|+.. .++.+...+...|  +.|...++++.+..   |
T Consensus       431 ~~l~~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~  507 (553)
T PRK12370        431 ELRSQ-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID  507 (553)
T ss_pred             HHHHh-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence            98764 22224556777888999999999999999988 4455433 4455555666666  47888788776643   4


Q ss_pred             CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          500 NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       500 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      .++..   +...|.-.|+.+.+... +++.+.|
T Consensus       508 ~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        508 NNPGL---LPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             cCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence            44433   55567778888887777 8777654

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.30  E-value=2.2e-10  Score=100.37  Aligned_cols=226  Identities=12%  Similarity=0.025  Sum_probs=190.5

Q ss_pred             HHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhc
Q 008276          302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--Q-DVVSWTSMISAYGMS  378 (571)
Q Consensus       302 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~  378 (571)
                      -..+..+|.+.|.+.+|++.++..++.  .|-+.+|..|-.+|.+..+++.|..++.+-.+  | |+....-+.+.+-..
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence            356778899999999999999998887  46667788889999999999999999998875  5 444455677888889


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008276          379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL  458 (571)
Q Consensus       379 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  458 (571)
                      ++.++|.++|+...+. -..+......+...|...++++.|+++|+++... |+ .++..|+.+.-+|.-.+++|-++.-
T Consensus       304 ~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence            9999999999999884 2335557777778888999999999999999986 54 4677888899889899999999998


Q ss_pred             HHhC---CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          459 IKQM---PMEP--NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       459 ~~~~---~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      |++.   -..|  -...|-.+.......||+..|.+.|+-++..+|++..+++.|+..-.+.|+.++|..+++......
T Consensus       381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~  459 (478)
T KOG1129|consen  381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM  459 (478)
T ss_pred             HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence            8876   1223  456788888888899999999999999999999999999999999999999999999999876543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.29  E-value=1.9e-08  Score=99.09  Aligned_cols=427  Identities=12%  Similarity=0.055  Sum_probs=236.2

Q ss_pred             HHHHHhhcCCChHHHHHHHcccCC--CC-hhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhh----
Q 008276           69 KLMRTYGACGQMVDTRHVFDEITN--KN-VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACS----  141 (571)
Q Consensus        69 ~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~----  141 (571)
                      .....+...|++++|++.++....  .| ..........+.+.|+.++|..+|..+.+.+  |+...|...+..+.    
T Consensus         9 Y~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~   86 (517)
T PF12569_consen    9 YKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL   86 (517)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence            344556677777777777766443  23 3345556667777777777777777777753  56555544444333    


Q ss_pred             --cCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHH-HHHHHHccCCCCCc-hhHHHHHHHHHhCCCchHHHH
Q 008276          142 --GSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLK-EARRVLNDMPSKDV-VTWNSMVAGYAQNGRFDEALD  217 (571)
Q Consensus       142 --~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~  217 (571)
                        ...+.+...++++++...-  |.......+.-.+..-..+. .+..++..+..+.+ .+|+.+-..|....+.+-..+
T Consensus        87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~  164 (517)
T PF12569_consen   87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIES  164 (517)
T ss_pred             ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHH
Confidence              1123455555565554432  22111111111111111111 12222222222222 233333333332222222223


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChh--hHHHHHHHHHHcCCchHHHHHHHHHHHCCC
Q 008276          218 VCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLV--SWNVMIAVYANNSMPAEAVDLYLQMEVHGI  295 (571)
Q Consensus       218 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~  295 (571)
                      ++.......-.               .+.  .....  -....+|+..  ++.-+...|-..|++++|++++++.++.  
T Consensus       165 l~~~~~~~l~~---------------~~~--~~~~~--~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--  223 (517)
T PF12569_consen  165 LVEEYVNSLES---------------NGS--FSNGD--DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--  223 (517)
T ss_pred             HHHHHHHhhcc---------------cCC--CCCcc--ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--
Confidence            33322221000               000  00000  0011234443  4456678888999999999999998886  


Q ss_pred             CCC-HHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh--------
Q 008276          296 EPN-AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV--------  366 (571)
Q Consensus       296 ~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------  366 (571)
                      .|+ ...|..-...+-+.|++.+|...++...+.+ .-|-.+-+..+..+.+.|+.++|.+++....+++..        
T Consensus       224 tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~m  302 (517)
T PF12569_consen  224 TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDM  302 (517)
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHH
Confidence            454 5777788888999999999999999999876 456677777788889999999999999888765421        


Q ss_pred             --HH--HHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHH
Q 008276          367 --SW--TSMISAYGMSGQGYDAVALFSKMLMS--GLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA  440 (571)
Q Consensus       367 --~~--~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  440 (571)
                        .|  .....+|.+.|++..|++.|....+.  .+.-|..-|...   |.+.+.+..=.++++.--.-+..+.=.....
T Consensus       303 Qc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Y---c~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~  379 (517)
T PF12569_consen  303 QCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSY---CLRKMTLRAYVDMLRWEDKLRSHPFYRRAAK  379 (517)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHH---HHhhccHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence              12  33467788999999999999887763  234455555432   5555554433333322211111111123334


Q ss_pred             HHHHHHHhcCCH------------------HHHHHHHHhC----------------------------------CCCCCH
Q 008276          441 CLVDLLGRAGKV------------------EEAYDLIKQM----------------------------------PMEPNE  468 (571)
Q Consensus       441 ~l~~~~~~~g~~------------------~~A~~~~~~~----------------------------------~~~p~~  468 (571)
                      ..++.|.+..+-                  .+..++-++.                                  +.+.|.
T Consensus       380 ~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~  459 (517)
T PF12569_consen  380 GAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDD  459 (517)
T ss_pred             HHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCC
Confidence            455555432110                  0000010000                                  001111


Q ss_pred             HHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 008276          469 RIWGSLVAACCL-YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKF  527 (571)
Q Consensus       469 ~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  527 (571)
                      ..   +..-+.+ ..=.++|.++++-+.+..|++..+|..-..+|.+.|++--|++.+.+
T Consensus       460 Dp---~GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k  516 (517)
T PF12569_consen  460 DP---LGEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK  516 (517)
T ss_pred             Cc---cHHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence            11   1112222 23467899999999999999999999999999999999999988764

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.28  E-value=1.9e-09  Score=97.74  Aligned_cols=199  Identities=11%  Similarity=0.025  Sum_probs=105.2

Q ss_pred             hhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 008276          264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDM  343 (571)
Q Consensus       264 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  343 (571)
                      ...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++.|.+.++...+.. +.+...       
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~-------  101 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDV-------  101 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHH-------
Confidence            3456666677777777777777777665542 2234445555555556666666666666555543 222333       


Q ss_pred             HHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHH
Q 008276          344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYY  422 (571)
Q Consensus       344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~  422 (571)
                                              +..+...+...|++++|...+++.......| ....+..+...+...|++++|...
T Consensus       102 ------------------------~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  157 (234)
T TIGR02521       102 ------------------------LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY  157 (234)
T ss_pred             ------------------------HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence                                    3344444445555555555555554422111 222344455555556666666666


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 008276          423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHL  497 (571)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  497 (571)
                      +++..+.  .+.+...+..+...+...|++++|...+++. ...| +...+..+...+...|+.++|....+.+...
T Consensus       158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            6665542  1223444555556666666666666666554 2122 3444444555555566666666665555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=3.8e-08  Score=93.13  Aligned_cols=280  Identities=16%  Similarity=0.047  Sum_probs=198.6

Q ss_pred             hhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHH
Q 008276          197 VTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN  276 (571)
Q Consensus       197 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~  276 (571)
                      .....-..-+...+++.+..++.+...+.. +                                 .+...+..-|.++..
T Consensus       245 dll~~~ad~~y~~c~f~~c~kit~~lle~d-p---------------------------------fh~~~~~~~ia~l~e  290 (611)
T KOG1173|consen  245 DLLAEKADRLYYGCRFKECLKITEELLEKD-P---------------------------------FHLPCLPLHIACLYE  290 (611)
T ss_pred             HHHHHHHHHHHHcChHHHHHHHhHHHHhhC-C---------------------------------CCcchHHHHHHHHHH
Confidence            344444555666777777777777766532 1                                 122334444556667


Q ss_pred             cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 008276          277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTV  356 (571)
Q Consensus       277 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  356 (571)
                      .|+..+-..+=.+|.+.- +-...+|-.+.--|...|+.++|.+.|......+ +.-...|-.+...|.-.+..++|+..
T Consensus       291 l~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaa  368 (611)
T KOG1173|consen  291 LGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAA  368 (611)
T ss_pred             hcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHH
Confidence            777777666666776642 3445677777777777788888888888776554 22345677778888888888888887


Q ss_pred             HhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcC-
Q 008276          357 FDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK-  431 (571)
Q Consensus       357 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-  431 (571)
                      +....+   .....+--+..-|.+.++.+-|.++|.+...  +.| |+..++-+.-.....+.+.+|..+|+....... 
T Consensus       369 Y~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~  446 (611)
T KOG1173|consen  369 YFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKS  446 (611)
T ss_pred             HHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhh
Confidence            766543   2222333445567888999999999998887  666 455677666666678899999999988763211 


Q ss_pred             C---C-CCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 008276          432 L---V-PRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY  505 (571)
Q Consensus       432 ~---~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  505 (571)
                      +   . -...+++.|..+|.+.+++++|+..+++. ...| +..++.++.-.|...|+++.|+..|.+++.+.|++..+-
T Consensus       447 ~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~  526 (611)
T KOG1173|consen  447 VLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFIS  526 (611)
T ss_pred             ccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHH
Confidence            1   1 13456889999999999999999999987 3344 888999999999999999999999999999999998777


Q ss_pred             HHHHHHHHh
Q 008276          506 VLLSNIYAK  514 (571)
Q Consensus       506 ~~l~~~~~~  514 (571)
                      ..|..+...
T Consensus       527 ~lL~~aie~  535 (611)
T KOG1173|consen  527 ELLKLAIED  535 (611)
T ss_pred             HHHHHHHHh
Confidence            777655443

>PRK12370 invasion protein regulator; Provisional

Probab=99.26  E-value=1.1e-09  Score=111.62  Aligned_cols=210  Identities=12%  Similarity=-0.026  Sum_probs=163.8

Q ss_pred             CchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH---------hcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCC
Q 008276          313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYA---------KCGSLTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQ  380 (571)
Q Consensus       313 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~  380 (571)
                      +++++|...+++..+.. +.+...+..+..+|.         ..+++++|...+++..+  | +...+..+...+...|+
T Consensus       275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~  353 (553)
T PRK12370        275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE  353 (553)
T ss_pred             HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence            45688999999998875 334555655555443         23458899999998875  3 66788888889999999


Q ss_pred             hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 008276          381 GYDAVALFSKMLMSGLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI-EHFACLVDLLGRAGKVEEAYDL  458 (571)
Q Consensus       381 ~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~  458 (571)
                      +++|+..|+++.+  ..|+ ...+..+...+...|++++|...++++.+.   .|+. ..+..++..+...|++++|...
T Consensus       354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~  428 (553)
T PRK12370        354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRL  428 (553)
T ss_pred             HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence            9999999999999  4565 457888888999999999999999999865   3432 2333445556778999999999


Q ss_pred             HHhC-C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          459 IKQM-P-MEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       459 ~~~~-~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      ++++ . ..| ++..+..+..++...|+.++|...++++....|.+......++..|...|  ++|...++.+.+
T Consensus       429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~  501 (553)
T PRK12370        429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE  501 (553)
T ss_pred             HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence            9887 2 235 45557777888889999999999999998888888888888888888888  588887877764

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.26  E-value=1.9e-10  Score=100.70  Aligned_cols=231  Identities=10%  Similarity=0.008  Sum_probs=195.1

Q ss_pred             HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 008276          268 NVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC  347 (571)
Q Consensus       268 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  347 (571)
                      +.+.++|.+.|.+.+|.+.++.-++.  .|-..||..+-..|.+..++..|..++.+-.+.- +-++.....+...+...
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence            56889999999999999999988875  5677788889999999999999999999888763 44554455677888889


Q ss_pred             CCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHH
Q 008276          348 GSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK  424 (571)
Q Consensus       348 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~  424 (571)
                      ++.++|.++++...+   .++.....+...|.-.++++-|+.+|+++...|+. ++..|..+.-+|...++++-++..|+
T Consensus       304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~  382 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ  382 (478)
T ss_pred             HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence            999999999998876   35666677778888999999999999999999876 77889999999999999999999999


Q ss_pred             HHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 008276          425 IMTEQYKLVPRI--EHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPN  500 (571)
Q Consensus       425 ~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  500 (571)
                      +.... .-.|+.  ++|..+.......|++..|.+-|+-. ..+| ....++.|.-.-.+.|+.++|..+++.+.+..|.
T Consensus       383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~  461 (478)
T KOG1129|consen  383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD  461 (478)
T ss_pred             HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence            98765 334543  67888999999999999999999876 3344 5678999988888999999999999999999886


Q ss_pred             Cch
Q 008276          501 QSG  503 (571)
Q Consensus       501 ~~~  503 (571)
                      -.+
T Consensus       462 m~E  464 (478)
T KOG1129|consen  462 MAE  464 (478)
T ss_pred             ccc
Confidence            443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=1.1e-07  Score=90.62  Aligned_cols=411  Identities=12%  Similarity=0.031  Sum_probs=237.0

Q ss_pred             HHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCH
Q 008276          102 IRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL  181 (571)
Q Consensus       102 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~  181 (571)
                      ++-+...|++++|.....++...+ +-|...+..-+-++.+.+.++.|+.+.+.-..  ...+...+---.-+..+.+..
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~   95 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKL   95 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccH
Confidence            455667778888888888888754 44555666667777888888888755443211  011111111223445678999


Q ss_pred             HHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCccHHHHHHHHhhCC
Q 008276          182 KEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDA-DTMASLLPSVTNTSPENVLSVKEMFLKLD  260 (571)
Q Consensus       182 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~~~a~~~~~~~~  260 (571)
                      ++|+..++.....+..+...-...+.+.|++++|+++|+.+.+++..--. ..-..++.+-..      ..+. ..+...
T Consensus        96 Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~------l~~~-~~q~v~  168 (652)
T KOG2376|consen   96 DEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA------LQVQ-LLQSVP  168 (652)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh------hhHH-HHHhcc
Confidence            99999998665556667777778889999999999999999776543221 111222211111      1111 233333


Q ss_pred             CCChhhH---HHHHHHHHHcCCchHHHHHHHHHHHCC-------CCC------CH-HHHHHHHHHhccCCchHHHHHHHH
Q 008276          261 NKNLVSW---NVMIAVYANNSMPAEAVDLYLQMEVHG-------IEP------NA-ISVASVLPACGDLSALLLGRKIHR  323 (571)
Q Consensus       261 ~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~g-------~~~------~~-~~~~~ll~~~~~~~~~~~a~~~~~  323 (571)
                      .....+|   ......++..|++.+|++++....+.+       -.-      +. ..-..+...+...|+-.+|..+|.
T Consensus       169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~  248 (652)
T KOG2376|consen  169 EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV  248 (652)
T ss_pred             CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            2222233   334556778999999999999883211       011      11 122234445677899999999999


Q ss_pred             HHHHcCCCCChhHH----HHHHHHHHhcCCHH--HHHHHHhhCCC---------------CChhHHHHHHHHHHhcCChH
Q 008276          324 YVERKKLQPNLRLE----NALVDMYAKCGSLT--EARTVFDQMRC---------------QDVVSWTSMISAYGMSGQGY  382 (571)
Q Consensus       324 ~~~~~~~~~~~~~~----~~l~~~~~~~~~~~--~a~~~~~~~~~---------------~~~~~~~~li~~~~~~~~~~  382 (571)
                      .+++.+ .+|....    |.|+. +....++-  .+...++....               .....-+.++..|  .+..+
T Consensus       249 ~~i~~~-~~D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~  324 (652)
T KOG2376|consen  249 DIIKRN-PADEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMD  324 (652)
T ss_pred             HHHHhc-CCCchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHH
Confidence            999876 3443222    22221 11111111  11222222111               0111112222222  23334


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHhhc--CCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 008276          383 DAVALFSKMLMSGLCPDSIAFVSVLSACSH--AGLLEEGRYYFKIMTEQYKLVPR-IEHFACLVDLLGRAGKVEEAYDLI  459 (571)
Q Consensus       383 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~  459 (571)
                      .+.++-....  +..|.. .+..++..+.+  ......+..++....+  +.+-. ..+...++......|+++.|.+++
T Consensus       325 q~r~~~a~lp--~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il  399 (652)
T KOG2376|consen  325 QVRELSASLP--GMSPES-LFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEIL  399 (652)
T ss_pred             HHHHHHHhCC--ccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            4444433322  233433 34444444332  2246677777777765  33333 455667788889999999999999


Q ss_pred             H--------hC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-------CCCchhHHHHHHHHHhcCCHHHHHH
Q 008276          460 K--------QM-PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA-------PNQSGYYVLLSNIYAKAGRWGDVKR  523 (571)
Q Consensus       460 ~--------~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~  523 (571)
                      .        .+ .+.-.+.+...+...+.+.++.+.|..++..++..-       +.-...+..++..-.+.|+-++|..
T Consensus       400 ~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s  479 (652)
T KOG2376|consen  400 SLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS  479 (652)
T ss_pred             HHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence            8        44 233344455566777778888888888888877621       2223345556666677899999999


Q ss_pred             HHHHHHhC
Q 008276          524 VRKFMNSK  531 (571)
Q Consensus       524 ~~~~m~~~  531 (571)
                      +++++.+.
T Consensus       480 ~leel~k~  487 (652)
T KOG2376|consen  480 LLEELVKF  487 (652)
T ss_pred             HHHHHHHh
Confidence            99999863

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.25  E-value=1.1e-09  Score=91.74  Aligned_cols=187  Identities=15%  Similarity=0.091  Sum_probs=83.6

Q ss_pred             HHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcCCC
Q 008276          340 LVDMYAKCGSLTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS-IAFVSVLSACSHAGL  415 (571)
Q Consensus       340 l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~  415 (571)
                      |.-.|...|+...|..-+++..+  | +..+|..+...|.+.|+.+.|.+.|++...  +.|+. ...|....-+|..|.
T Consensus        41 Lal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~qg~  118 (250)
T COG3063          41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQGR  118 (250)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhCCC
Confidence            33444455555555555544443  1 222444444455555555555555555444  23322 233444444444445


Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008276          416 LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADH  493 (571)
Q Consensus       416 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~  493 (571)
                      +++|...|++.........-..+|..+.-+..+.|+++.|.+.|++. ...| .+.....+.......|++-.|..++++
T Consensus       119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~  198 (250)
T COG3063         119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLER  198 (250)
T ss_pred             hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence            55555555554443222222234444444444455555555554444 2222 233344444444444555555555554


Q ss_pred             HHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276          494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM  528 (571)
Q Consensus       494 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  528 (571)
                      .....+.+.......+..-...|+.+.|.++=.++
T Consensus       199 ~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL  233 (250)
T COG3063         199 YQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL  233 (250)
T ss_pred             HHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            44444444444444444444445444444443333

>PF13041 PPR_2: PPR repeat family

Probab=99.25  E-value=1.5e-11  Score=79.98  Aligned_cols=50  Identities=32%  Similarity=0.613  Sum_probs=43.2

Q ss_pred             CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhc
Q 008276           93 KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG  142 (571)
Q Consensus        93 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  142 (571)
                      ||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            67888888888888888888888888888888888888888888888764

>PF13041 PPR_2: PPR repeat family

Probab=99.24  E-value=3.2e-11  Score=78.40  Aligned_cols=50  Identities=30%  Similarity=0.539  Sum_probs=46.1

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 008276          363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH  412 (571)
Q Consensus       363 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~  412 (571)
                      ||+.+||.+|++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78899999999999999999999999999999999999999999999875

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.23  E-value=2.7e-07  Score=82.35  Aligned_cols=442  Identities=12%  Similarity=0.000  Sum_probs=246.2

Q ss_pred             HHHhhcCCChHHHHHHHcccCCCC----hhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCCh
Q 008276           71 MRTYGACGQMVDTRHVFDEITNKN----VVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSL  146 (571)
Q Consensus        71 ~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~  146 (571)
                      +.-+....++..|+.+++.-..-+    ..+---+..++.+.|++++|+..|+-+.+.. .|+...+..|.-..--.|.+
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence            344555677777777776543211    1122234567788899999999998877653 45555555554444456777


Q ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 008276          147 LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLR  226 (571)
Q Consensus       147 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  226 (571)
                      .+|..+-...     +.++--...|....-+.|+-++-..+-+.+.... .---+|.......-.+.+|+++|.+.... 
T Consensus       108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-  180 (557)
T KOG3785|consen  108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD-  180 (557)
T ss_pred             HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            7777765543     2233333444555566677666666555544322 22233444444455678899999888764 


Q ss_pred             CCCCHHHHHHHHHHh-cCCCCcc-HHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 008276          227 IKPDADTMASLLPSV-TNTSPEN-VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS  304 (571)
Q Consensus       227 ~~p~~~t~~~ll~~~-~~~~~~~-~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~  304 (571)
                       .|.-...+.-+..| .+..-.+ .....+++-+-.+.++.+.|.......+.=.-..|.+-.+++.+.+-..  ..+..
T Consensus       181 -n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--~~f~~  257 (557)
T KOG3785|consen  181 -NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--YPFIE  257 (557)
T ss_pred             -ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--chhHH
Confidence             34444444444433 2222200 1122222222223344445544444444333333444444444332111  01100


Q ss_pred             -HHH-HhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcC---
Q 008276          305 -VLP-ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG---  379 (571)
Q Consensus       305 -ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~---  379 (571)
                       +++ .+.--.+-+.|.+++-.+.+.  .|.  .-..|+-.|.+.+++.+|..+.+++....+.-|-.-.-.++..|   
T Consensus       258 ~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~  333 (557)
T KOG3785|consen  258 YLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQET  333 (557)
T ss_pred             HHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhc
Confidence             110 111122345566655544432  222  22345567889999999999999987544433322222222222   


Q ss_pred             ----ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008276          380 ----QGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE  454 (571)
Q Consensus       380 ----~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  454 (571)
                          ...-|...|+-.-+++..-|.. --.++..++.-..++++++-+++.+..- -...|... ..+..+++..|.+.+
T Consensus       334 gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn-~N~AQAk~atgny~e  411 (557)
T KOG3785|consen  334 GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFN-LNLAQAKLATGNYVE  411 (557)
T ss_pred             CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhh-hHHHHHHHHhcChHH
Confidence                3445666665544444333222 2223444455556789999999888653 33444444 458899999999999


Q ss_pred             HHHHHHhC-CCC-CCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhC-CCC-chhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          455 AYDLIKQM-PME-PNERIWGS-LVAACCLYSNMDIGILAADHIFHLA-PNQ-SGYYVLLSNIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       455 A~~~~~~~-~~~-p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~  529 (571)
                      |+++|-.+ +.+ .|..+|.+ |.+.|.+.++++.|..++-   +.+ |.+ ......+++-|.+++.+==|.+.|+.+.
T Consensus       412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l---k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE  488 (557)
T KOG3785|consen  412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML---KTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELE  488 (557)
T ss_pred             HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH---hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            99999988 222 35566655 5566778999998877654   444 322 3345567778899999988888888876


Q ss_pred             hCC
Q 008276          530 SKG  532 (571)
Q Consensus       530 ~~~  532 (571)
                      ..+
T Consensus       489 ~lD  491 (557)
T KOG3785|consen  489 ILD  491 (557)
T ss_pred             ccC
Confidence            554

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=7.2e-07  Score=81.35  Aligned_cols=262  Identities=10%  Similarity=-0.017  Sum_probs=194.5

Q ss_pred             ChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 008276          263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA-ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV  341 (571)
Q Consensus       263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  341 (571)
                      |+.....+.+++...|+.++|...|++.+..  .|+. .........+...|+.+....+...+.... +.+...|-.-.
T Consensus       231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~  307 (564)
T KOG1174|consen  231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA  307 (564)
T ss_pred             cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence            5677888899999999999999999998753  3433 222222233456788888888777776543 22233333333


Q ss_pred             HHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHH
Q 008276          342 DMYAKCGSLTEARTVFDQMRCQ---DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLE  417 (571)
Q Consensus       342 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~  417 (571)
                      .......+++.|..+-++..+-   ++..|-.-...+...++.++|.-.|+..+.  +.| +..+|..|+.+|...|.+.
T Consensus       308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~k  385 (564)
T KOG1174|consen  308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFK  385 (564)
T ss_pred             hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHH
Confidence            4455678899999998887753   444555555678899999999999999888  565 5669999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHH-HHH-HhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 008276          418 EGRYYFKIMTEQYKLVPRIEHFACLV-DLL-GRAGKVEEAYDLIKQM-PMEPNE-RIWGSLVAACCLYSNMDIGILAADH  493 (571)
Q Consensus       418 ~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~  493 (571)
                      +|...-+...+  .++.+..+...+. ..+ ..-..-++|.+++++. .++|+. ...+.+...|...|..++++.++++
T Consensus       386 EA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~  463 (564)
T KOG1174|consen  386 EANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK  463 (564)
T ss_pred             HHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence            99988777766  3444555544442 222 2223458899999987 778864 4667777788899999999999999


Q ss_pred             HHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          494 IFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       494 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      .+...|+ ...+..|++.+.....+.+|.+.|......+
T Consensus       464 ~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d  501 (564)
T KOG1174|consen  464 HLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQD  501 (564)
T ss_pred             HHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            9998884 6689999999999999999999998877554

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.21  E-value=2.6e-09  Score=99.58  Aligned_cols=233  Identities=12%  Similarity=-0.056  Sum_probs=145.6

Q ss_pred             HHHHcCCchHHHHHHHHHHHCC-CCCC--HHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 008276          273 VYANNSMPAEAVDLYLQMEVHG-IEPN--AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS  349 (571)
Q Consensus       273 ~~~~~g~~~~A~~~~~~m~~~g-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  349 (571)
                      .....++.+.++..+.+++... ..|+  ...|......+...|+.+.|...|+...+.. +.+...|+.+...+...|+
T Consensus        35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~  113 (296)
T PRK11189         35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGN  113 (296)
T ss_pred             ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCC
Confidence            3344456677888888877542 2222  3456666667778888888888888888765 4566778888888888888


Q ss_pred             HHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 008276          350 LTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM  426 (571)
Q Consensus       350 ~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~  426 (571)
                      +++|...|+...+  | +...|..+...+...|++++|++.|++..+  ..|+..........+...++.++|...++..
T Consensus       114 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~  191 (296)
T PRK11189        114 FDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQR  191 (296)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            8888888887754  3 355677777778888888888888888877  4454432222222234556788888888665


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHhcCCHHH--HHHHHHhC-CC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 008276          427 TEQYKLVPRIEHFACLVDLLGRAGKVEE--AYDLIKQM-PM----EP-NERIWGSLVAACCLYSNMDIGILAADHIFHLA  498 (571)
Q Consensus       427 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  498 (571)
                      ..  ...|+...+ .+...  ..|+..+  +.+.+.+. ..    .| ....|..+...+.+.|++++|+..|+++.+.+
T Consensus       192 ~~--~~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        192 YE--KLDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             Hh--hCCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            44  223333222 22222  2444333  33222221 11    12 23467777888888888888888888888888


Q ss_pred             C-CCchhHHHHHHHHH
Q 008276          499 P-NQSGYYVLLSNIYA  513 (571)
Q Consensus       499 p-~~~~~~~~l~~~~~  513 (571)
                      | +.......++....
T Consensus       267 ~~~~~e~~~~~~e~~~  282 (296)
T PRK11189        267 VYNFVEHRYALLELAL  282 (296)
T ss_pred             CchHHHHHHHHHHHHH
Confidence            6 44444444544433

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.19  E-value=1.2e-08  Score=95.27  Aligned_cols=212  Identities=15%  Similarity=0.096  Sum_probs=146.8

Q ss_pred             CchHHHHHHHHHHHHcC-CCC--ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHH
Q 008276          313 SALLLGRKIHRYVERKK-LQP--NLRLENALVDMYAKCGSLTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQGYDAVA  386 (571)
Q Consensus       313 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~  386 (571)
                      +..+.+..-+.+++... ..|  ....|..+...|...|+.++|...|++..+  | +...|+.+...+...|++++|..
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            45566666666666432 122  235566777788899999999998888764  3 56789999999999999999999


Q ss_pred             HHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--C
Q 008276          387 LFSKMLMSGLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM--P  463 (571)
Q Consensus       387 ~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~  463 (571)
                      .|++..+  +.|+ ...|..+..++...|++++|.+.|+...+.   .|+..........+...++.++|.+.|.+.  .
T Consensus       120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence            9999988  5565 457777888888899999999999998864   343322222223345567899999998665  2


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008276          464 MEPNERIWGSLVAACCLYSNMDIGILAADHIF-------HLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI  533 (571)
Q Consensus       464 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  533 (571)
                      ..|+...|   .......|+...+ ..++.+.       ++.|....+|..++.++.+.|++++|...|++..+.++
T Consensus       195 ~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~  267 (296)
T PRK11189        195 LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV  267 (296)
T ss_pred             CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            23332222   2222335555443 2333333       45566778899999999999999999999998886653

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.19  E-value=8.7e-08  Score=93.23  Aligned_cols=218  Identities=10%  Similarity=0.066  Sum_probs=103.4

Q ss_pred             HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHH
Q 008276          275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEAR  354 (571)
Q Consensus       275 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  354 (571)
                      ....+|.+|+.+++.+....  ....-|..+...|...|+++.|+++|.+.         ..++-.|.+|.+.|+++.|.
T Consensus       743 i~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~  811 (1636)
T KOG3616|consen  743 IGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAF  811 (1636)
T ss_pred             hhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHH
Confidence            34445555555555554432  22233445555566666666666555432         12334455566666666666


Q ss_pred             HHHhhCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 008276          355 TVFDQMRCQDV--VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL  432 (571)
Q Consensus       355 ~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  432 (571)
                      ++-++...|..  ..|-.-..-+-++|++.+|.++|-...    .|+.     .|..|-+.|..+..+++.++-.-.   
T Consensus       812 kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d---  879 (1636)
T KOG3616|consen  812 KLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---  879 (1636)
T ss_pred             HHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh---
Confidence            66555554422  234333444455566665555553321    1222     234455556656555555443211   


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 008276          433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY  512 (571)
Q Consensus       433 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  512 (571)
                       .-..+...+..-|...|++..|..-|-+.+      -|.+-++.|...+-+++|.++.+   ..+-.+..-.....++-
T Consensus       880 -~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~dayriak---tegg~n~~k~v~flwak  949 (1636)
T KOG3616|consen  880 -HLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIAK---TEGGANAEKHVAFLWAK  949 (1636)
T ss_pred             -hhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHHh---ccccccHHHHHHHHHHH
Confidence             111333445555666666666666655543      24444455555555555443322   22222333333333333


Q ss_pred             HhcCCHHHHHHHHHH
Q 008276          513 AKAGRWGDVKRVRKF  527 (571)
Q Consensus       513 ~~~g~~~~A~~~~~~  527 (571)
                      .-.|  +.|.+++.+
T Consensus       950 sigg--daavkllnk  962 (1636)
T KOG3616|consen  950 SIGG--DAAVKLLNK  962 (1636)
T ss_pred             hhCc--HHHHHHHHh
Confidence            3333  556666654

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.19  E-value=4.8e-07  Score=89.06  Aligned_cols=420  Identities=13%  Similarity=0.063  Sum_probs=229.8

Q ss_pred             cCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-cccHH
Q 008276           59 HLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD-CYTYP  134 (571)
Q Consensus        59 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~  134 (571)
                      .+.-++.+|..|--++..+|+++.+.+.|+....   .....|+.+...+...|.-..|+.+++.-....-+|+ ...+-
T Consensus       318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L  397 (799)
T KOG4162|consen  318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL  397 (799)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence            3444666666666666777777777777766543   2344577777777777777777777766544321232 22222


Q ss_pred             HHHHHhh-cCCChHHHHHHHHHHHHhC--C--CCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhC
Q 008276          135 CVLKACS-GSNSLLVGLQIHCSVVKVG--L--DYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQN  209 (571)
Q Consensus       135 ~li~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~  209 (571)
                      ..-+.|. +.+..++++.+..+++...  .  ......|..+.-+|...-.            +.+..+        .+.
T Consensus       398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~------------~a~~~s--------eR~  457 (799)
T KOG4162|consen  398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR------------QANLKS--------ERD  457 (799)
T ss_pred             HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh------------cCCChH--------HHH
Confidence            2222333 3455555555555554411  0  1112222222222221100            000000        000


Q ss_pred             CCchHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHH
Q 008276          210 GRFDEALDVCREMESL-RIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL  288 (571)
Q Consensus       210 g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  288 (571)
                      ....++++.+++..+. +-.|+...|..+-.+..+.-....+.+++.+.-....+...|..|.-.+...+++.+|+.+.+
T Consensus       458 ~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd  537 (799)
T KOG4162|consen  458 ALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD  537 (799)
T ss_pred             HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence            1123444455554443 233444444444444444333333334444444344567778888888888888888888887


Q ss_pred             HHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHH---------------------cC-------CCCChhHHHHH
Q 008276          289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVER---------------------KK-------LQPNLRLENAL  340 (571)
Q Consensus       289 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------------~~-------~~~~~~~~~~l  340 (571)
                      ...+.- .-|......-+..-...++.+++......+..                     .|       ......++..+
T Consensus       538 ~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l  616 (799)
T KOG4162|consen  538 AALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL  616 (799)
T ss_pred             HHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH
Confidence            765431 01111111111111123333333332222111                     00       01112222222


Q ss_pred             HHHHHhcC---CHHHHHHHHhhCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 008276          341 VDMYAKCG---SLTEARTVFDQMRCQD------VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS  411 (571)
Q Consensus       341 ~~~~~~~~---~~~~a~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~  411 (571)
                      .......+   ..+.....+.....|+      ...|......+.+.++.++|...+.+.... .+-....|......+.
T Consensus       617 s~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~  695 (799)
T KOG4162|consen  617 SSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLE  695 (799)
T ss_pred             HHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHH
Confidence            22111111   1111111111111232      224666777888999999999888888773 2335557777778888


Q ss_pred             cCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 008276          412 HAGLLEEGRYYFKIMTEQYKLVP-RIEHFACLVDLLGRAGKVEEAYD--LIKQM-PMEP-NERIWGSLVAACCLYSNMDI  486 (571)
Q Consensus       412 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~  486 (571)
                      ..|.+++|.+.|.....   +.| ++....++..++.+.|+..-|..  ++..+ .+.| +...|-.+...+.+.|+.+.
T Consensus       696 ~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~  772 (799)
T KOG4162|consen  696 VKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQ  772 (799)
T ss_pred             HHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHH
Confidence            89999999999998874   344 45778899999999998777776  77777 6777 78899999999999999999


Q ss_pred             HHHHHHHHHhhCCCCch
Q 008276          487 GILAADHIFHLAPNQSG  503 (571)
Q Consensus       487 A~~~~~~~~~~~p~~~~  503 (571)
                      |...|+.+.++.+.+|.
T Consensus       773 Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  773 AAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHHHHHhhccCCCc
Confidence            99999999999876654

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.18  E-value=8.5e-08  Score=83.43  Aligned_cols=354  Identities=10%  Similarity=0.014  Sum_probs=187.9

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHccCCC--CCchhHHH-HHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCC
Q 008276          168 GNGLVAMYGKCGCLKEARRVLNDMPS--KDVVTWNS-MVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNT  244 (571)
Q Consensus       168 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~  244 (571)
                      .+.|..+|....++..|-..++++..  |...-|.. -...+.+.+.+..|+++...|...   |.-..-..-+.+..+-
T Consensus        47 LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkY  123 (459)
T KOG4340|consen   47 LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKY  123 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhc
Confidence            33344444444444444444444432  21111111 123334444555555555444321   2222222222233333


Q ss_pred             CCccHHHHHHHHhhCC-CCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHH
Q 008276          245 SPENVLSVKEMFLKLD-NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHR  323 (571)
Q Consensus       245 ~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  323 (571)
                      ...++..++.+.++.. +.+..+.+.......+.|+++.|.+-|....+-+---....|+..+ +..+.++++.|.+...
T Consensus       124 se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iS  202 (459)
T KOG4340|consen  124 SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHIS  202 (459)
T ss_pred             ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHH
Confidence            3333444555555554 3445555555666677888888888888876653333345565555 4456678888888888


Q ss_pred             HHHHcCCCC-------------Ch---------------hHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhHHHH
Q 008276          324 YVERKKLQP-------------NL---------------RLENALVDMYAKCGSLTEARTVFDQMRC-----QDVVSWTS  370 (571)
Q Consensus       324 ~~~~~~~~~-------------~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~  370 (571)
                      ++++.|++.             |.               ..+|.-...+.+.++.+.|.+.+-.|+.     -|++|...
T Consensus       203 EIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN  282 (459)
T KOG4340|consen  203 EIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHN  282 (459)
T ss_pred             HHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhH
Confidence            887765421             11               1222233345678999999999999974     46777665


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hc
Q 008276          371 MISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG-RA  449 (571)
Q Consensus       371 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~  449 (571)
                      +.-. .-.+++-+..+-+.-+..... -...||..++-.||+..-++.|..++.+-....-.-.+...|+ +++++. -.
T Consensus       283 ~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~q  359 (459)
T KOG4340|consen  283 QALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQ  359 (459)
T ss_pred             HHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCC
Confidence            5432 224556666666666666432 2455888899999999988888888754322100012333343 344443 34


Q ss_pred             CCHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC----HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 008276          450 GKVEEAYDLIKQMPMEPNERIWGSLVAAC-CLYSN----MDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRV  524 (571)
Q Consensus       450 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~-~~~g~----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  524 (571)
                      -..++|.+-++.+........-...+... .+..+    ...+++-|++.+++--   .+....++.|++..++..+.++
T Consensus       360 T~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~  436 (459)
T KOG4340|consen  360 TAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKI  436 (459)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHH
Confidence            46666666555541000000011111111 11222    2244455555555441   1556677889999999999999


Q ss_pred             HHHHHhC
Q 008276          525 RKFMNSK  531 (571)
Q Consensus       525 ~~~m~~~  531 (571)
                      |..-.+-
T Consensus       437 Fr~Svef  443 (459)
T KOG4340|consen  437 FRKSVEF  443 (459)
T ss_pred             HHHHHhh
Confidence            9876543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.17  E-value=2.2e-06  Score=82.84  Aligned_cols=195  Identities=12%  Similarity=-0.002  Sum_probs=85.3

Q ss_pred             hhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhHHHHHHHHHHcCChhHHH
Q 008276           39 DKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFFNVLIRSYVNNYLYYDAL  115 (571)
Q Consensus        39 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~  115 (571)
                      ...|+.++|......-+ ... ..+.+-|..+.-.+..-.++++|+++|.....   .|...|.-+.-.-++.|+++...
T Consensus        52 ~~lg~~~ea~~~vr~gl-r~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~  129 (700)
T KOG1156|consen   52 NCLGKKEEAYELVRLGL-RND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYL  129 (700)
T ss_pred             hcccchHHHHHHHHHHh-ccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHH
Confidence            33444555544444443 221 22333444444444444455555555543321   24444444444444444555544


Q ss_pred             HHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCC-CCchhHHHHH------HHHHHhCCCHHHHHHHH
Q 008276          116 HVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGL-DYNLFNGNGL------VAMYGKCGCLKEARRVL  188 (571)
Q Consensus       116 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l------~~~~~~~g~~~~A~~~~  188 (571)
                      +....+.+.. +-....|..+..+.--.|+...|..++++..+... .|+...+.-.      .....+.|..++|.+.+
T Consensus       130 ~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L  208 (700)
T KOG1156|consen  130 ETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL  208 (700)
T ss_pred             HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            4444444421 11223344444444455555555555555554431 2333332221      12234455555555555


Q ss_pred             ccCCCC--Cch-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008276          189 NDMPSK--DVV-TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLL  238 (571)
Q Consensus       189 ~~~~~~--~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll  238 (571)
                      ......  |-. .-..-...+.+.++.++|..++..++..  .||..-|...+
T Consensus       209 ~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l  259 (700)
T KOG1156|consen  209 LDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGL  259 (700)
T ss_pred             HhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHH
Confidence            444321  111 1223334455556666666666665553  34444443333

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.16  E-value=6.8e-08  Score=95.27  Aligned_cols=176  Identities=13%  Similarity=0.062  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHc----C----------CCCChh--HHHHHHHHHH
Q 008276          282 EAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERK----K----------LQPNLR--LENALVDMYA  345 (571)
Q Consensus       282 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~~--~~~~l~~~~~  345 (571)
                      .+..++..+...|+++   +|+.+-..|.......-...++......    +          -+|+..  ++..+...|-
T Consensus       129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd  205 (517)
T PF12569_consen  129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD  205 (517)
T ss_pred             HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence            3445566666777543   4444444455444444445555444321    0          123332  3344566677


Q ss_pred             hcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHH
Q 008276          346 KCGSLTEARTVFDQMRC--QD-VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYY  422 (571)
Q Consensus       346 ~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~  422 (571)
                      ..|++++|.++++...+  |. +..|..-...+-+.|++.+|.+.++..+.... -|...-+..+..+.+.|+.++|..+
T Consensus       206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~  284 (517)
T PF12569_consen  206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKT  284 (517)
T ss_pred             HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            77888888888877664  33 44677777777788888888888887777432 2555555566677778888888888


Q ss_pred             HHHHHHhcCCCCCHH--------HHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276          423 FKIMTEQYKLVPRIE--------HFACLVDLLGRAGKVEEAYDLIKQM  462 (571)
Q Consensus       423 ~~~~~~~~~~~~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~  462 (571)
                      +....+. +..|...        ...-...+|.+.|++..|++-|..+
T Consensus       285 ~~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v  331 (517)
T PF12569_consen  285 ASLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV  331 (517)
T ss_pred             HHhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            7777654 3222221        1133456777777777777665544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.15  E-value=1.5e-08  Score=98.64  Aligned_cols=253  Identities=17%  Similarity=0.167  Sum_probs=141.7

Q ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHccCCC----------CCch-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHH
Q 008276          164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPS----------KDVV-TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDAD  232 (571)
Q Consensus       164 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  232 (571)
                      -..+...|...|...|+++.|+.+++...+          +.+. ..+.+...|...+++++|..+|+++..        
T Consensus       198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~--------  269 (508)
T KOG1840|consen  198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT--------  269 (508)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--------
Confidence            345666688999999999999999886643          2222 344567788899999999999998854        


Q ss_pred             HHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC
Q 008276          233 TMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL  312 (571)
Q Consensus       233 t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~  312 (571)
                                        .-+..+-...+.-..+++.|..+|.+.|++++|..+++...+-                   
T Consensus       270 ------------------i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I-------------------  312 (508)
T KOG1840|consen  270 ------------------IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI-------------------  312 (508)
T ss_pred             ------------------HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-------------------
Confidence                              1112222222223456777888888888888888887766531                   


Q ss_pred             CchHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 008276          313 SALLLGRKIHRYVERKKLQPNL-RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKM  391 (571)
Q Consensus       313 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  391 (571)
                               ++..... ..|.+ ..++.+...+...+++++|..++..                        +.+++...
T Consensus       313 ---------~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~------------------------al~i~~~~  358 (508)
T KOG1840|consen  313 ---------YEKLLGA-SHPEVAAQLSELAAILQSMNEYEEAKKLLQK------------------------ALKIYLDA  358 (508)
T ss_pred             ---------HHHhhcc-ChHHHHHHHHHHHHHHHHhcchhHHHHHHHH------------------------HHHHHHhh
Confidence                     1110000 01111 1122233344444444444444322                        11111111


Q ss_pred             HHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC--
Q 008276          392 LMSGLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQY-----KLVPR-IEHFACLVDLLGRAGKVEEAYDLIKQM--  462 (571)
Q Consensus       392 ~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--  462 (571)
                      ... ..|+ ..+++.+...|.+.|++++|.++++++....     +..+. ...++.+...|.+.++.++|.++|.+.  
T Consensus       359 ~g~-~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~  437 (508)
T KOG1840|consen  359 PGE-DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD  437 (508)
T ss_pred             ccc-cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            010 0111 1255666666666666666666666554431     11111 234555666666666666666665544  


Q ss_pred             ------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          463 ------PMEPN-ERIWGSLVAACCLYSNMDIGILAADHIFH  496 (571)
Q Consensus       463 ------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  496 (571)
                            +..|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus       438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence                  22333 34677778888888888888887777664

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.15  E-value=2.2e-07  Score=82.53  Aligned_cols=304  Identities=14%  Similarity=0.067  Sum_probs=215.5

Q ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHH---HHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008276          164 NLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMV---AGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS  240 (571)
Q Consensus       164 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~  240 (571)
                      ++.-.-.+...+...|++.+|+.-|....+-|+..|.++.   ..|...|+...|+.=+.+.++  ++||-.. ..+   
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~-ARi---  110 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMA-ARI---  110 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHH-HHH---
Confidence            3444455677788889999999999888887777776654   567888888888888888776  3666211 011   


Q ss_pred             hcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC------------H--HHHHHHH
Q 008276          241 VTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN------------A--ISVASVL  306 (571)
Q Consensus       241 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~------------~--~~~~~ll  306 (571)
                                                  .-...+.+.|.++.|..=|+..++....-+            .  ......+
T Consensus       111 ----------------------------QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql  162 (504)
T KOG0624|consen  111 ----------------------------QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQL  162 (504)
T ss_pred             ----------------------------HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHH
Confidence                                        112345667777777777777766532110            0  1122334


Q ss_pred             HHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHH
Q 008276          307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR---CQDVVSWTSMISAYGMSGQGYD  383 (571)
Q Consensus       307 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~  383 (571)
                      ..+...|+...++.....+++.. +.+...+..-..+|...|++..|+.=++...   ..+..++.-+-..+-..|+.+.
T Consensus       163 ~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~  241 (504)
T KOG0624|consen  163 KSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAEN  241 (504)
T ss_pred             HHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHH
Confidence            45667788888888888888865 5677888888889999999999987766654   3567777777777888899999


Q ss_pred             HHHHHHHHHHCCCCCCHHH-H---HHH---------HHHhhcCCCHHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHH
Q 008276          384 AVALFSKMLMSGLCPDSIA-F---VSV---------LSACSHAGLLEEGRYYFKIMTEQYKLVPR-----IEHFACLVDL  445 (571)
Q Consensus       384 a~~~~~~m~~~g~~p~~~~-~---~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~  445 (571)
                      ++...++.++  +.||... |   ..+         +......++|.++.+..+...+.   .|.     ...+..+-.+
T Consensus       242 sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C  316 (504)
T KOG0624|consen  242 SLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTC  316 (504)
T ss_pred             HHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeec
Confidence            9998888888  6777652 2   111         11234567788888888877754   333     2334556667


Q ss_pred             HHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 008276          446 LGRAGKVEEAYDLIKQM-PMEPN-ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL  507 (571)
Q Consensus       446 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  507 (571)
                      +...|++.+|+....+. .+.|+ ..++..-..+|.--..++.|+.-|+++.+.++++..+-..
T Consensus       317 ~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG  380 (504)
T KOG0624|consen  317 YREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG  380 (504)
T ss_pred             ccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence            77888999999988887 67775 7788888888988899999999999999999888665443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.14  E-value=1.1e-06  Score=84.75  Aligned_cols=367  Identities=11%  Similarity=0.043  Sum_probs=173.6

Q ss_pred             cHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCC---CCchhHHHHHHHHHh
Q 008276          132 TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS---KDVVTWNSMVAGYAQ  208 (571)
Q Consensus       132 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~  208 (571)
                      .|+.+.-.+....++++|...+......+ +.|...+..+.-.-+..|+++.....-....+   .....|..++.++.-
T Consensus        77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L  155 (700)
T KOG1156|consen   77 CWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL  155 (700)
T ss_pred             hHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            33333333333444444444444444332 22333333333333333444433333322222   234467777777777


Q ss_pred             CCCchHHHHHHHHHHHCC-CCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHH
Q 008276          209 NGRFDEALDVCREMESLR-IKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY  287 (571)
Q Consensus       209 ~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  287 (571)
                      .|+...|..++++..+.. -.|+...+......+                           --.......|.+++|++.+
T Consensus       156 ~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~L---------------------------y~n~i~~E~g~~q~ale~L  208 (700)
T KOG1156|consen  156 LGEYKMALEILEEFEKTQNTSPSKEDYEHSELLL---------------------------YQNQILIEAGSLQKALEHL  208 (700)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHH---------------------------HHHHHHHHcccHHHHHHHH
Confidence            888888888888777643 234444332221110                           0112334455555555554


Q ss_pred             HHHHHCCCCCCHHHH-HHHHHHhccCCchHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHhcCCHHHHH-HHHhhCCC--
Q 008276          288 LQMEVHGIEPNAISV-ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL-ENALVDMYAKCGSLTEAR-TVFDQMRC--  362 (571)
Q Consensus       288 ~~m~~~g~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~-~~~~~~~~--  362 (571)
                      ..-...  ..|...+ ..-...+.+.+++++|..++..++..+  ||... |..+..++.+-.+.-++. .+|....+  
T Consensus       209 ~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y  284 (700)
T KOG1156|consen  209 LDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY  284 (700)
T ss_pred             HhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence            433221  1122111 122233455666666666666666653  33333 333333443222222222 44444332  


Q ss_pred             CChh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHH----hc-------
Q 008276          363 QDVV-SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE----QY-------  430 (571)
Q Consensus       363 ~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-------  430 (571)
                      |-.. .-..=+.......-.+..-+++..+.+.|+++-...+.++   +-.....+-..++.-.+..    ..       
T Consensus       285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~  361 (700)
T KOG1156|consen  285 PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDD  361 (700)
T ss_pred             cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccc
Confidence            0000 0000011111112223344555666666665433332222   2111111111111111111    00       


Q ss_pred             --CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 008276          431 --KLVPRI--EHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNER-IWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY  504 (571)
Q Consensus       431 --~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  504 (571)
                        .-+|..  .++..++..+-+.|+++.|..+++.. +-.|+.. .|..-.+.+...|++++|...++++.+++..|..+
T Consensus       362 ~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~I  441 (700)
T KOG1156|consen  362 GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAI  441 (700)
T ss_pred             cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHH
Confidence              013443  33455667777788888888888776 5556433 44444566777788888888888888887666666


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008276          505 YVLLSNIYAKAGRWGDVKRVRKFMNSKGI  533 (571)
Q Consensus       505 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  533 (571)
                      -..-+.-..++.+.++|.++....-..|.
T Consensus       442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~  470 (700)
T KOG1156|consen  442 NSKCAKYMLRANEIEEAEEVLSKFTREGF  470 (700)
T ss_pred             HHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence            55667777778888888877776655553

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.12  E-value=5.2e-08  Score=81.89  Aligned_cols=193  Identities=11%  Similarity=0.009  Sum_probs=97.9

Q ss_pred             HhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHH
Q 008276          308 ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDA  384 (571)
Q Consensus       308 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a  384 (571)
                      .|...|+...|..-+++.++.+ +.+..++..+...|.+.|+.+.|.+.|+...+   .+-...|.....+|..|++++|
T Consensus        44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA  122 (250)
T COG3063          44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA  122 (250)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence            3444444444444444444433 23334444444555555555555555554432   2334455555555556666666


Q ss_pred             HHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 008276          385 VALFSKMLMSGLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-  462 (571)
Q Consensus       385 ~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-  462 (571)
                      ...|++....-.-|. ..+|..+.-+..+.|+.+.|...|++..+.  .+........+.....+.|++-.|..+++.. 
T Consensus       123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~  200 (250)
T COG3063         123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLERYQ  200 (250)
T ss_pred             HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            666665555322222 225555555555666666666666665542  1222344445555556666666666665554 


Q ss_pred             -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 008276          463 -PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG  503 (571)
Q Consensus       463 -~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  503 (571)
                       ...++.......|..-...||-+.+-+.=.++.+..|.+..
T Consensus       201 ~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e  242 (250)
T COG3063         201 QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE  242 (250)
T ss_pred             hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence             22345555555555555566666655555555555555443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.08  E-value=3.9e-06  Score=83.17  Aligned_cols=340  Identities=11%  Similarity=0.046  Sum_probs=215.5

Q ss_pred             HhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC-----------CCh-hhHHHHHHHH
Q 008276           38 LDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN-----------KNV-VFFNVLIRSY  105 (571)
Q Consensus        38 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~-~~~~~li~~~  105 (571)
                      |.-.|+++.|.+..+.+.       +-.+|..+.++|.+.++++-|.-++-.|..           .|. ..-....-..
T Consensus       738 yvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLA  810 (1416)
T KOG3617|consen  738 YVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLA  810 (1416)
T ss_pred             EEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHH
Confidence            344588888887777665       556899999999999988888888877753           111 2223334445


Q ss_pred             HHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHH
Q 008276          106 VNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEAR  185 (571)
Q Consensus       106 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~  185 (571)
                      ...|..++|..+|.+-++.         ..|=+.|-..|.+++|.++.+.--+..   =..||.....-+-..++++.|+
T Consensus       811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Al  878 (1416)
T KOG3617|consen  811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAAL  878 (1416)
T ss_pred             HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHH
Confidence            6778899999999888763         233444556788999888876432221   1345555566666778888888


Q ss_pred             HHHccCCC-----------------------CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 008276          186 RVLNDMPS-----------------------KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT  242 (571)
Q Consensus       186 ~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~  242 (571)
                      +.|++...                       +|...|.-....+-..|+.+.|+.+|...++         |-.+++..+
T Consensus       879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C  949 (1416)
T KOG3617|consen  879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKC  949 (1416)
T ss_pred             HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEe
Confidence            88876531                       3555666677777778999999999888764         334445455


Q ss_pred             CCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhc------------
Q 008276          243 NTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG------------  310 (571)
Q Consensus       243 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~------------  310 (571)
                      -.|.  .++|..+-++.  .|..+...|.+.|-+.|++.+|...|.+.+.         |...|+.|-            
T Consensus       950 ~qGk--~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nla 1016 (1416)
T KOG3617|consen  950 IQGK--TDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLA 1016 (1416)
T ss_pred             eccC--chHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHH
Confidence            5555  66666665543  3567788899999999999999999987653         222222221            


Q ss_pred             ---cCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------------CChhHHHHHHH
Q 008276          311 ---DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--------------QDVVSWTSMIS  373 (571)
Q Consensus       311 ---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------~~~~~~~~li~  373 (571)
                         ...+.-.|-++|++.   |.     -+...+..|-+.|.+.+|+++-=+-.+              .|+...+...+
T Consensus      1017 l~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rcad 1088 (1416)
T KOG3617|consen 1017 LMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCAD 1088 (1416)
T ss_pred             hhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence               122333344444432   21     122334567777887777765322221              36666777777


Q ss_pred             HHHhcCChHHHHHHHHHHHH----------CC----------------CCCCH----HHHHHHHHHhhcCCCHHHHHHHH
Q 008276          374 AYGMSGQGYDAVALFSKMLM----------SG----------------LCPDS----IAFVSVLSACSHAGLLEEGRYYF  423 (571)
Q Consensus       374 ~~~~~~~~~~a~~~~~~m~~----------~g----------------~~p~~----~~~~~l~~~~~~~~~~~~a~~~~  423 (571)
                      .++...++++|..++-..++          .|                -.|+.    .....+...|.++|.+..|-+-|
T Consensus      1089 FF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1089 FFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKF 1168 (1416)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            77777777777776644322          11                11222    24556667778888887777666


Q ss_pred             HHH
Q 008276          424 KIM  426 (571)
Q Consensus       424 ~~~  426 (571)
                      -+.
T Consensus      1169 TQA 1171 (1416)
T KOG3617|consen 1169 TQA 1171 (1416)
T ss_pred             hhh
Confidence            554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.07  E-value=5.7e-09  Score=98.97  Aligned_cols=216  Identities=13%  Similarity=0.084  Sum_probs=171.5

Q ss_pred             hccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHH
Q 008276          309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAV  385 (571)
Q Consensus       309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~  385 (571)
                      +.+.|++.+|.-.|+..++.+ +-+...|..|.......++-..|+..+.++.+   .|....-.|.-.|...|.-..|+
T Consensus       295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al  373 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL  373 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence            356677888888888877765 55677788887778888888888888887765   35566777777888888888899


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHH-----------HHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008276          386 ALFSKMLMSGLCPDSIAFVSVL-----------SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE  454 (571)
Q Consensus       386 ~~~~~m~~~g~~p~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  454 (571)
                      +.+++-+...  |..   ..+.           ..+.....+....++|-.+....+..+|+.+...|.-.|.-.|.+++
T Consensus       374 ~~L~~Wi~~~--p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  374 KMLDKWIRNK--PKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHhC--ccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            9888876532  111   1111           22333445566677777776655666888999999999999999999


Q ss_pred             HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          455 AYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       455 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      |.+.|+.+ .++| |...||-|...+....+.++|+..|.+++++.|....++..|+-.|...|.|++|...|=+.+.
T Consensus       449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS  526 (579)
T ss_pred             HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            99999988 7788 7889999999999999999999999999999999999999999999999999999998776653

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=1.6e-05  Score=80.66  Aligned_cols=156  Identities=17%  Similarity=0.256  Sum_probs=113.8

Q ss_pred             CCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 008276          348 GSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT  427 (571)
Q Consensus       348 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  427 (571)
                      +.++.|.++-++..  .+..|+.+..+-.+.|...+|++-|-+.      -|+..|..+++.+.+.|.|++-.+++....
T Consensus      1089 ~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred             hhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            34444444444443  3457999999999999999999877542      356689999999999999999999998887


Q ss_pred             HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 008276          428 EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL  507 (571)
Q Consensus       428 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  507 (571)
                      ++ .-.|...  +.|+-+|++.++..+.++++.    .|+......+..-|...|.++.|.-+|..        .+-|..
T Consensus      1161 kk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~ 1225 (1666)
T KOG0985|consen 1161 KK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAK 1225 (1666)
T ss_pred             Hh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHH
Confidence            76 5566665  468999999999988877663    46666667777777778888877777663        344666


Q ss_pred             HHHHHHhcCCHHHHHHHHH
Q 008276          508 LSNIYAKAGRWGDVKRVRK  526 (571)
Q Consensus       508 l~~~~~~~g~~~~A~~~~~  526 (571)
                      |+..+...|.+..|....+
T Consensus      1226 La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1226 LASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            6666666666666654433

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.06  E-value=2.2e-05  Score=79.78  Aligned_cols=453  Identities=13%  Similarity=0.142  Sum_probs=263.0

Q ss_pred             cCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC------------CCh
Q 008276           28 LLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN------------KNV   95 (571)
Q Consensus        28 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------~~~   95 (571)
                      ....+.|..-..+..++......++..+ +.|.. ++.++|+|.+.|...++-.+  +.+++-+-            +|+
T Consensus       838 q~~~deLv~EvEkRNRLklLlp~LE~~i-~eG~~-d~a~hnAlaKIyIDSNNnPE--~fLkeN~yYDs~vVGkYCEKRDP  913 (1666)
T KOG0985|consen  838 QFPVDELVEEVEKRNRLKLLLPWLESLI-QEGSQ-DPATHNALAKIYIDSNNNPE--RFLKENPYYDSKVVGKYCEKRDP  913 (1666)
T ss_pred             cCChHHHHHHHHhhhhHHHHHHHHHHHH-hccCc-chHHHhhhhheeecCCCChH--HhcccCCcchhhHHhhhhcccCC
Confidence            4455667777778888888889999998 88876 99999999999997654322  12222110            111


Q ss_pred             -----------------------hhHHHHHHHHHHcCChhHHHHHH-----------HHHHhCCC--CCCcccHHHHHHH
Q 008276           96 -----------------------VFFNVLIRSYVNNYLYYDALHVY-----------KNMSVHGF--DPDCYTYPCVLKA  139 (571)
Q Consensus        96 -----------------------~~~~~li~~~~~~~~~~~A~~~~-----------~~m~~~g~--~p~~~~~~~li~~  139 (571)
                                             ..|....+.+.+..+.+--.+++           ++..+.++  ..|+......+++
T Consensus       914 ~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkA  993 (1666)
T KOG0985|consen  914 HLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKA  993 (1666)
T ss_pred             ceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHH
Confidence                                   12333333344444433222222           11222111  1233344445555


Q ss_pred             hhcCCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHH
Q 008276          140 CSGSNSLLVGLQIHCSVVKVG--LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALD  217 (571)
Q Consensus       140 ~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  217 (571)
                      +...+-+.+-.++++.+.-..  +..+....|.|+-...+ .+..+..+..+++..-|..   .+...+..++-+++|..
T Consensus       994 fMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~---~ia~iai~~~LyEEAF~ 1069 (1666)
T KOG0985|consen  994 FMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAP---DIAEIAIENQLYEEAFA 1069 (1666)
T ss_pred             HHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCch---hHHHHHhhhhHHHHHHH
Confidence            555555556666666554322  12222333333333332 2334444444444432221   13445566777888888


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCC
Q 008276          218 VCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEP  297 (571)
Q Consensus       218 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~  297 (571)
                      +|++.     ..+....+.++.....     ++.|.+.-++..+  +..|+.+..+-.+.|...+|++-|-+      .-
T Consensus      1070 ifkkf-----~~n~~A~~VLie~i~~-----ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyik------ad 1131 (1666)
T KOG0985|consen 1070 IFKKF-----DMNVSAIQVLIENIGS-----LDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIK------AD 1131 (1666)
T ss_pred             HHHHh-----cccHHHHHHHHHHhhh-----HHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHh------cC
Confidence            88775     3455556666655444     7778887777776  45799999999999999999887743      24


Q ss_pred             CHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhH----------
Q 008276          298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVS----------  367 (571)
Q Consensus       298 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------  367 (571)
                      |...|..++..+.+.|.+++..+++....+..-.|.+.  +.|+-+|++.+++.+.++++.-   ||..-          
T Consensus      1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~g---pN~A~i~~vGdrcf~ 1206 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAG---PNVANIQQVGDRCFE 1206 (1666)
T ss_pred             CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcC---CCchhHHHHhHHHhh
Confidence            66789999999999999999999999998876666554  5688899999998887766532   33333          


Q ss_pred             ----------------HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 008276          368 ----------------WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK  431 (571)
Q Consensus       368 ----------------~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  431 (571)
                                      |..|...+...|++..|...-++.      -+..||..+-.+|...+.+.-|.     |-.. +
T Consensus      1207 ~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL-~ 1274 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICGL-N 1274 (1666)
T ss_pred             hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcCc-e
Confidence                            444444455555555554433321      23446666666665554443321     1100 1


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 008276          432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS  509 (571)
Q Consensus       432 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  509 (571)
                      +.....-..-+++.|...|-+++-+.+++.. |.+- ....|+.|.-.|.+. ++++-.+.++-....-     -.--++
T Consensus      1275 iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRv-----NipKvi 1348 (1666)
T KOG0985|consen 1275 IIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRV-----NIPKVI 1348 (1666)
T ss_pred             EEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhc-----chHHHH
Confidence            1223344566777888888888888887765 5443 334455555444443 4444444444433321     112355


Q ss_pred             HHHHhcCCHHHHHHHHHHHH
Q 008276          510 NIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       510 ~~~~~~g~~~~A~~~~~~m~  529 (571)
                      .++.++.-|.+..-++....
T Consensus      1349 RA~eqahlW~ElvfLY~~y~ 1368 (1666)
T KOG0985|consen 1349 RAAEQAHLWSELVFLYDKYE 1368 (1666)
T ss_pred             HHHHHHHHHHHHHHHHHhhh
Confidence            66666666766666655443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.04  E-value=4.5e-09  Score=96.44  Aligned_cols=150  Identities=14%  Similarity=0.130  Sum_probs=61.4

Q ss_pred             HHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----CCCHHHH
Q 008276          344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH----AGLLEEG  419 (571)
Q Consensus       344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a  419 (571)
                      +...|++++|.+++...  .+.......+..|.+.++++.|.+.++.|.+  +..|. +...+..++..    .+.+.+|
T Consensus       112 ~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~~~A  186 (290)
T PF04733_consen  112 LFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKYQDA  186 (290)
T ss_dssp             HCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCCCHH
T ss_pred             HHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhHHHH
Confidence            33445555555444443  3344444444455555555555555555544  22222 22222222211    1234455


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 008276          420 RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNM-DIGILAADHIFH  496 (571)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~  496 (571)
                      ..+|+++.+  ...+++.+.+.+..+....|++++|.+++.+. ...| ++.++..++......|+. +.+.+.+.++..
T Consensus       187 ~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  187 FYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             HHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred             HHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence            555555433  23344444444444455555555555544443 2222 333333344443444443 334444444444


Q ss_pred             hCCC
Q 008276          497 LAPN  500 (571)
Q Consensus       497 ~~p~  500 (571)
                      ..|+
T Consensus       265 ~~p~  268 (290)
T PF04733_consen  265 SNPN  268 (290)
T ss_dssp             HTTT
T ss_pred             hCCC
Confidence            4444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=1.1e-06  Score=83.10  Aligned_cols=437  Identities=10%  Similarity=-0.029  Sum_probs=241.1

Q ss_pred             HHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC--C-ChhhHHHHHHHHHHcC
Q 008276           33 ACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN--K-NVVFFNVLIRSYVNNY  109 (571)
Q Consensus        33 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~  109 (571)
                      .-.++....|+++.|...|...+ ...++ +-..|+.-..+|++.|++++|.+=-....+  | -...|+....++.-.|
T Consensus         7 ~kgnaa~s~~d~~~ai~~~t~ai-~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg   84 (539)
T KOG0548|consen    7 EKGNAAFSSGDFETAIRLFTEAI-MLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG   84 (539)
T ss_pred             HHHHhhcccccHHHHHHHHHHHH-ccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence            34566777899999999999888 66644 788888888899999999888765544433  2 2346888888888899


Q ss_pred             ChhHHHHHHHHHHhCCCCCCc-ccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHH-----HHHHHhCCCHHH
Q 008276          110 LYYDALHVYKNMSVHGFDPDC-YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGL-----VAMYGKCGCLKE  183 (571)
Q Consensus       110 ~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-----~~~~~~~g~~~~  183 (571)
                      ++++|+.-|.+=.+.  .|+. ..++-+..+.    ..+.+.     +.   .--++..|..+     .+.+...-.+..
T Consensus        85 ~~~eA~~ay~~GL~~--d~~n~~L~~gl~~a~----~~~~~~-----~~---~~~~p~~~~~l~~~p~t~~~~~~~~~~~  150 (539)
T KOG0548|consen   85 DYEEAILAYSEGLEK--DPSNKQLKTGLAQAY----LEDYAA-----DQ---LFTKPYFHEKLANLPLTNYSLSDPAYVK  150 (539)
T ss_pred             cHHHHHHHHHHHhhc--CCchHHHHHhHHHhh----hHHHHh-----hh---hccCcHHHHHhhcChhhhhhhccHHHHH
Confidence            999999999887764  3443 3444454444    111110     00   00111122111     112222222222


Q ss_pred             HHHHHccCCCCCchh---HHHHHHHHHhCCCchHHHHHHHHHHHCC-------CCCCHHHHHHHHHHhcCCCCccHHHHH
Q 008276          184 ARRVLNDMPSKDVVT---WNSMVAGYAQNGRFDEALDVCREMESLR-------IKPDADTMASLLPSVTNTSPENVLSVK  253 (571)
Q Consensus       184 A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~g-------~~p~~~t~~~ll~~~~~~~~~~~~~a~  253 (571)
                      -++.+...+. +...   ...++.+.......+.-     .+...|       ..|.        .-. ..+...+++-.
T Consensus       151 ~l~~~~~~p~-~l~~~l~d~r~m~a~~~l~~~~~~-----~~~~~~~~~~~~~~~p~--------~~~-~~~~~~~~d~~  215 (539)
T KOG0548|consen  151 ILEIIQKNPT-SLKLYLNDPRLMKADGQLKGVDEL-----LFYASGIEILASMAEPC--------KQE-HNGFPIIEDNT  215 (539)
T ss_pred             HHHHhhcCcH-hhhcccccHHHHHHHHHHhcCccc-----cccccccccCCCCCCcc--------ccc-CCCCCccchhH
Confidence            2222222211 0000   01111111111000000     000111       1111        000 00000000000


Q ss_pred             HHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCC
Q 008276          254 EMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN  333 (571)
Q Consensus       254 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  333 (571)
                      +.-+  ...-......+.++.-+..+++.|++-+....+..  -+..-++....++...|.+......-....+.|.. .
T Consensus       216 ee~~--~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~  290 (539)
T KOG0548|consen  216 EERR--VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-L  290 (539)
T ss_pred             HHHH--HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-H
Confidence            0000  00012235567778888889999999998887754  34444555556678888777776666665555421 1


Q ss_pred             hhHHH-------HHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHH
Q 008276          334 LRLEN-------ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI-AFVS  405 (571)
Q Consensus       334 ~~~~~-------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~  405 (571)
                      ..-|+       .+..+|.+.++++.+...|.+...+...     -+...+....+++....+...-  +.|... -...
T Consensus       291 rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~  363 (539)
T KOG0548|consen  291 RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEERE  363 (539)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHH
Confidence            11222       2334566667788888877775431111     1122333444555555554443  333332 1222


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 008276          406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN-ERIWGSLVAACCLYSN  483 (571)
Q Consensus       406 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~  483 (571)
                      -...+.+.|++..|...|.++++.  .+.|...|....-+|.+.|.+..|++-.+.. ...|+ ...|.-=..++....+
T Consensus       364 kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~  441 (539)
T KOG0548|consen  364 KGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKE  441 (539)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence            245667788899999888888874  3566788888888888888888888877766 44553 3345444555566778


Q ss_pred             HHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 008276          484 MDIGILAADHIFHLAPNQSGYYVLLSNIYAK  514 (571)
Q Consensus       484 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  514 (571)
                      ++.|++.|++.++.+|.+..+...+..++..
T Consensus       442 ydkAleay~eale~dp~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  442 YDKALEAYQEALELDPSNAEAIDGYRRCVEA  472 (539)
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            8888889998888888887777777766654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.99  E-value=4.5e-08  Score=89.88  Aligned_cols=244  Identities=9%  Similarity=0.017  Sum_probs=154.4

Q ss_pred             HHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 008276          274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA  353 (571)
Q Consensus       274 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  353 (571)
                      +.-.|++..++.-.+ ........+......+.+++...|+.+.+.   ..+.+.. .|.......+...+...++-+.+
T Consensus        11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~   85 (290)
T PF04733_consen   11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA   85 (290)
T ss_dssp             HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred             HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence            344566666664444 222111112233444555666666654332   2332222 55555555554444443455566


Q ss_pred             HHHHhhCC-CC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276          354 RTVFDQMR-CQ----DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE  428 (571)
Q Consensus       354 ~~~~~~~~-~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  428 (571)
                      ..-+++.. ++    +..........+...|++++|++++...      .+.......+..+.+.++++.|.+.++.|.+
T Consensus        86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~  159 (290)
T PF04733_consen   86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ  159 (290)
T ss_dssp             HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            55555443 22    2222222334566789999999887642      3566777788999999999999999999974


Q ss_pred             hcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 008276          429 QYKLVPRIEHFACLVDLLGR----AGKVEEAYDLIKQM--PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS  502 (571)
Q Consensus       429 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  502 (571)
                         +..|. +...++.++..    .+.+.+|..+|+++  ...+++.+.+.+..++...|++++|..+++++.+.+|.++
T Consensus       160 ---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~  235 (290)
T PF04733_consen  160 ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP  235 (290)
T ss_dssp             ---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred             ---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence               33443 33445554432    34689999999999  4457888889999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhcCCH-HHHHHHHHHHHhCC
Q 008276          503 GYYVLLSNIYAKAGRW-GDVKRVRKFMNSKG  532 (571)
Q Consensus       503 ~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~~  532 (571)
                      .+...++.+....|+. +.+.+++.+++...
T Consensus       236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~  266 (290)
T PF04733_consen  236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSN  266 (290)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence            9999999998999988 66788888887653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.98  E-value=9e-06  Score=79.70  Aligned_cols=248  Identities=15%  Similarity=0.141  Sum_probs=169.9

Q ss_pred             HHHHHHHHhhCCCCChh--hHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 008276          249 VLSVKEMFLKLDNKNLV--SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE  326 (571)
Q Consensus       249 ~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  326 (571)
                      +.++..+++.+...+..  -|..+.+.|...|+++.|.++|.+.-         .+.-.|..|.+.|+++.|.++-.+..
T Consensus       748 w~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~  818 (1636)
T KOG3616|consen  748 WKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH  818 (1636)
T ss_pred             hhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc
Confidence            77888888877755443  47778899999999999999996532         34556778999999999988866544


Q ss_pred             HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHH
Q 008276          327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS--IAFV  404 (571)
Q Consensus       327 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~  404 (571)
                        |.......|.+-..-+-+.|++.+|.+++-.+..|+.     .|+.|-+.|..+..+++.++-     .|+.  .|-.
T Consensus       819 --~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~  886 (1636)
T KOG3616|consen  819 --GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHK  886 (1636)
T ss_pred             --CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHH
Confidence              4455666777777778889999999999999888875     467888999999998887663     3332  3566


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH-----HHHH------H
Q 008276          405 SVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE-----RIWG------S  473 (571)
Q Consensus       405 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-----~~~~------~  473 (571)
                      .+..-+...|++..|...|-+..+          |.+-+.+|...+.|++|-++-+.-+-. +.     ..|.      +
T Consensus       887 ~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~-n~~k~v~flwaksiggda  955 (1636)
T KOG3616|consen  887 HFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGA-NAEKHVAFLWAKSIGGDA  955 (1636)
T ss_pred             HHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccc-cHHHHHHHHHHHhhCcHH
Confidence            677778888999999888766542          455667777777777777776654211 11     1111      1


Q ss_pred             HHHHHHhcCCHH-------------HHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          474 LVAACCLYSNMD-------------IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       474 l~~~~~~~g~~~-------------~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      .+..+-++|-.+             -|..+-+-..+  ...+..+..++..+...|++++|...+-+..+
T Consensus       956 avkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen  956 AVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred             HHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhh
Confidence            112222333333             33333332222  22355777888888899999999777665543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.96  E-value=6e-06  Score=80.18  Aligned_cols=259  Identities=9%  Similarity=-0.095  Sum_probs=145.8

Q ss_pred             HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHH---HHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 008276          272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVAS---VLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG  348 (571)
Q Consensus       272 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  348 (571)
                      ..+...|++++|.+.+++..+.. +.+...+..   ........+..+.+.+.+... ....+........+...+...|
T Consensus        51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G  128 (355)
T cd05804          51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAG  128 (355)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcC
Confidence            34556677777777777776642 223333321   111112234444444444431 1111222233344556677788


Q ss_pred             CHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHhhcCCCHHHHHHH
Q 008276          349 SLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL-CPDS--IAFVSVLSACSHAGLLEEGRYY  422 (571)
Q Consensus       349 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~~~~~l~~~~~~~~~~~~a~~~  422 (571)
                      ++++|...+++..+   .+...+..+...+...|++++|..++++...... .|+.  ..|..+...+...|++++|..+
T Consensus       129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~  208 (355)
T cd05804         129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI  208 (355)
T ss_pred             CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            88888888877664   3455677777788888888888888887776421 1222  2355667777888888888888


Q ss_pred             HHHHHHhcCCCCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008276          423 FKIMTEQYKLVPRIEHF-A--CLVDLLGRAGKVEEAYDL---IKQM----PMEPNERIWGSLVAACCLYSNMDIGILAAD  492 (571)
Q Consensus       423 ~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  492 (571)
                      ++.+.......+..... +  .++..+...|..+.+.+.   ....    ..............++...|+.+.|...++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~  288 (355)
T cd05804         209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA  288 (355)
T ss_pred             HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            88875321111222111 1  223333334432222222   1111    101111222345666778888999999888


Q ss_pred             HHHhhCC---------CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          493 HIFHLAP---------NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       493 ~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      .+.....         .........+.++...|++++|.+.+.+.....
T Consensus       289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL  337 (355)
T ss_pred             HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            8766331         124455666777889999999999998887543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=1.5e-06  Score=82.32  Aligned_cols=217  Identities=12%  Similarity=0.069  Sum_probs=150.6

Q ss_pred             HHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh---hHHH-------HH
Q 008276          302 VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDV---VSWT-------SM  371 (571)
Q Consensus       302 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~-------~l  371 (571)
                      ...+.++..+..+++.+.+-+.......  -++..++....+|...|.+..+...-+...+..-   .-|+       .+
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~  304 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL  304 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            3455666666777788888887777665  4555566666777777777666655544332111   1122       23


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcC
Q 008276          372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI-EHFACLVDLLGRAG  450 (571)
Q Consensus       372 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g  450 (571)
                      ..+|.+.++++.++..|.+....-..|+..         .+....+++....+...   -+.|.. .-...-...+.+.|
T Consensus       305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~g  372 (539)
T KOG0548|consen  305 GNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKG  372 (539)
T ss_pred             hhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhcc
Confidence            345666777888888888766643333221         22233444544444433   223433 11222366778899


Q ss_pred             CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276          451 KVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM  528 (571)
Q Consensus       451 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  528 (571)
                      ++..|+..+.++ ...| |...|..-..+|.+.|.+..|+.-.+..++++|+....|..=+.++....+|++|.+.|++-
T Consensus       373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea  452 (539)
T KOG0548|consen  373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA  452 (539)
T ss_pred             CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988 5566 78899999999999999999999999999999999999999999999999999999999987


Q ss_pred             HhCC
Q 008276          529 NSKG  532 (571)
Q Consensus       529 ~~~~  532 (571)
                      .+.+
T Consensus       453 le~d  456 (539)
T KOG0548|consen  453 LELD  456 (539)
T ss_pred             HhcC
Confidence            6654

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.95  E-value=1.3e-06  Score=88.27  Aligned_cols=130  Identities=13%  Similarity=0.029  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 008276          400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA----CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLV  475 (571)
Q Consensus       400 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~  475 (571)
                      ...|........+.+.+..|.....++..-....-+...|+    .+.+.+...|.++.|...+.......+......-+
T Consensus       967 ~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l 1046 (1238)
T KOG1127|consen  967 CFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDL 1046 (1238)
T ss_pred             hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhH
Confidence            34555555555555555555555444322111122333333    34455566677776666555543333333322222


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCch---hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          476 AACCLYSNMDIGILAADHIFHLAPNQSG---YYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       476 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      .. .-.++++++.+.|+++..+..++..   ....++.+....+..+.|...+-+...
T Consensus      1047 ~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1047 TL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred             HH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence            22 3468899999999999987744433   344555666777888888887766654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.93  E-value=9e-05  Score=81.72  Aligned_cols=263  Identities=15%  Similarity=0.056  Sum_probs=170.7

Q ss_pred             HHHHHHHcCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHhccCCchHHHHHHHHHHHHcCC---CCC--hhHHHHH
Q 008276          270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNA----ISVASVLPACGDLSALLLGRKIHRYVERKKL---QPN--LRLENAL  340 (571)
Q Consensus       270 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l  340 (571)
                      +...+...|++++|...+++....-...+.    .....+...+...|+++.|...+........   .+.  ......+
T Consensus       458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l  537 (903)
T PRK04841        458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ  537 (903)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence            345566789999999999887653111121    2334455566778999999998888765311   111  2344456


Q ss_pred             HHHHHhcCCHHHHHHHHhhCCC-------CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC--HHHHHH
Q 008276          341 VDMYAKCGSLTEARTVFDQMRC-------QD----VVSWTSMISAYGMSGQGYDAVALFSKMLMSG--LCPD--SIAFVS  405 (571)
Q Consensus       341 ~~~~~~~~~~~~a~~~~~~~~~-------~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~--~~~~~~  405 (571)
                      ...+...|+++.|...+++...       ++    ...+..+...+...|++++|...+.+.....  ..+.  ...+..
T Consensus       538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  617 (903)
T PRK04841        538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM  617 (903)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence            6677889999999888776542       11    1234455566777899999999988876531  1122  234555


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHhCCC-C-CCH----HHHHHH
Q 008276          406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF-----ACLVDLLGRAGKVEEAYDLIKQMPM-E-PNE----RIWGSL  474 (571)
Q Consensus       406 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~l  474 (571)
                      +.......|+++.|.+.++..............+     ...+..+...|+.+.|.+.+..... . ...    ..+..+
T Consensus       618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~  697 (903)
T PRK04841        618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI  697 (903)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence            6667778899999999888875431111111111     1122445568899999999877621 1 111    113456


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhC------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          475 VAACCLYSNMDIGILAADHIFHLA------PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       475 ~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      ..++...|++++|...++++....      +....++..++.++...|+.++|...+.+..+..
T Consensus       698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            667788999999999999987743      1223467788889999999999999999887543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.92  E-value=5.7e-07  Score=78.40  Aligned_cols=154  Identities=11%  Similarity=0.086  Sum_probs=83.3

Q ss_pred             HHHHHHHhhcCCChHHHHHHHcccCCC---ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHH-HHHHhhc
Q 008276           67 GLKLMRTYGACGQMVDTRHVFDEITNK---NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPC-VLKACSG  142 (571)
Q Consensus        67 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~  142 (571)
                      +.+.+..+.+..++++|++++..-.++   +....+.|..+|-...++..|-+.|+++...  -|...-|.. -...+.+
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~   90 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK   90 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence            445555555666666666666544432   3344555566666666666666666666553  344333321 1233445


Q ss_pred             CCChHHHHHHHHHHHHhCCCCchhHHHHHH--HHHHhCCCHHHHHHHHccCCC-CCchhHHHHHHHHHhCCCchHHHHHH
Q 008276          143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLV--AMYGKCGCLKEARRVLNDMPS-KDVVTWNSMVAGYAQNGRFDEALDVC  219 (571)
Q Consensus       143 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~  219 (571)
                      .+.+..|+++...|...   ++...-..-+  ......+++..+..++++.+. .+..+.+.......+.|+++.|++-|
T Consensus        91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF  167 (459)
T KOG4340|consen   91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF  167 (459)
T ss_pred             hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence            55666666666555431   1111111111  122345666677777777663 55555555556666777777777777


Q ss_pred             HHHHHC
Q 008276          220 REMESL  225 (571)
Q Consensus       220 ~~m~~~  225 (571)
                      +...+-
T Consensus       168 qaAlqv  173 (459)
T KOG4340|consen  168 QAALQV  173 (459)
T ss_pred             HHHHhh
Confidence            766653

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.89  E-value=2.7e-07  Score=80.02  Aligned_cols=118  Identities=11%  Similarity=0.029  Sum_probs=82.5

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHH
Q 008276          413 AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAAC-CLYSN--MDIG  487 (571)
Q Consensus       413 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~A  487 (571)
                      .++.+++...++...+  ..+.+...|..+...|...|++++|...+++. ...| +...+..+..++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            4555666666666655  33556677777777777777777777777776 4455 556666666653 45565  4777


Q ss_pred             HHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       488 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      ..+++++++.+|+++.++..++..+...|++++|+..|+++.+..
T Consensus       130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            777777777777777777777777777777777777777776654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.89  E-value=2.8e-07  Score=83.52  Aligned_cols=181  Identities=12%  Similarity=0.005  Sum_probs=114.7

Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-h---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----
Q 008276          332 PNLRLENALVDMYAKCGSLTEARTVFDQMRC--QD-V---VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI----  401 (571)
Q Consensus       332 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----  401 (571)
                      .....+..+...+...|+++.|...|+++.+  |+ .   ..+..+..++...|++++|+..++++.+.  .|+..    
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~  108 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY  108 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence            3445555666677777777777777776653  32 1   34566667777777777777777777763  33211    


Q ss_pred             HHHHHHHHhhcC--------CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 008276          402 AFVSVLSACSHA--------GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS  473 (571)
Q Consensus       402 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~  473 (571)
                      ++..+..++...        |+++.|.+.++.+...+  +.+...+..+.....    ....   .        ......
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~---~--------~~~~~~  171 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNR---L--------AGKELY  171 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHH---H--------HHHHHH
Confidence            344444444433        56677777777776541  112222221111110    0000   0        001124


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276          474 LVAACCLYSNMDIGILAADHIFHLAPNQ---SGYYVLLSNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       474 l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                      +...+...|++++|+..++++++..|++   +..+..++.++.+.|++++|..+++.+...
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            5566888999999999999999987765   478999999999999999999999988754

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.87  E-value=5e-06  Score=84.26  Aligned_cols=457  Identities=13%  Similarity=0.032  Sum_probs=264.8

Q ss_pred             hcCCCC-hhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCCccc
Q 008276           58 QHLHSN-PSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG-FDPDCYT  132 (571)
Q Consensus        58 ~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~  132 (571)
                      ..+.++ ...|..|...|+...+...|.++|+..-+   .+...+......|++..+++.|..+.-..-+.. ...-..-
T Consensus       485 lrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~n  564 (1238)
T KOG1127|consen  485 LRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKEN  564 (1238)
T ss_pred             HhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhh
Confidence            344444 45788899999888888899999987655   466788889999999999999998844333221 0001112


Q ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCch-hH--HHHHHHHHhC
Q 008276          133 YPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVV-TW--NSMVAGYAQN  209 (571)
Q Consensus       133 ~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~--~~li~~~~~~  209 (571)
                      |..+--.+.+.++...+..-|+...+.. +-|...|..+..+|.++|++..|.++|.+...-++. .|  --.....+..
T Consensus       565 W~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~  643 (1238)
T KOG1127|consen  565 WVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN  643 (1238)
T ss_pred             hhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence            3333334667888888888888887764 457889999999999999999999999887653332 22  2233445678


Q ss_pred             CCchHHHHHHHHHHHC------CCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHH-HHHHHc-CCc-
Q 008276          210 GRFDEALDVCREMESL------RIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMI-AVYANN-SMP-  280 (571)
Q Consensus       210 g~~~~a~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~-~~~~~~-g~~-  280 (571)
                      |++++|+..+......      +...-..++..+...+...+-  ...+.+.+++.    ...+...+ ...+.. -.+ 
T Consensus       644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf--~~kavd~~eks----ie~f~~~l~h~~~~~~~~Wi  717 (1238)
T KOG1127|consen  644 GKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGF--QKKAVDFFEKS----IESFIVSLIHSLQSDRLQWI  717 (1238)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH--hhhhhHHHHHH----HHHHHHHHHHhhhhhHHHHH
Confidence            9999999998877542      111111222211111111111  11111111111    11111111 110000 001 


Q ss_pred             --hHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCch---H---HHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cC
Q 008276          281 --AEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL---L---LGRKIHRYVERKKLQPNLRLENALVDMYAK----CG  348 (571)
Q Consensus       281 --~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~  348 (571)
                        ..|..+|-+.. .. .|+......+..-....+..   +   -+.+.+-.-.+  ...+..+|..|...|.+    .+
T Consensus       718 ~asdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~  793 (1238)
T KOG1127|consen  718 VASDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLG  793 (1238)
T ss_pred             HHhHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcC
Confidence              11222222222 11 23322222222212122211   1   01111111111  11223333333333322    12


Q ss_pred             ----CHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHH
Q 008276          349 ----SLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY  421 (571)
Q Consensus       349 ----~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~  421 (571)
                          +...|...+....+   .+..+|+.|.-. ...|++.-+...|-+-+.. .+.+..+|..+.-.+....+++.|..
T Consensus       794 et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~  871 (1238)
T KOG1127|consen  794 ETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEP  871 (1238)
T ss_pred             CcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhH
Confidence                23356666665543   566677777655 6667888888888776664 23356688888888899999999999


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHH-----
Q 008276          422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-------PMEPNERIWGSLVAACCLYSNMDIGIL-----  489 (571)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~A~~-----  489 (571)
                      .|...+.  -.+.+...|..........|+.-++..+|..-       +.-|+...|.+...-....|+.++-+.     
T Consensus       872 af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki  949 (1238)
T KOG1127|consen  872 AFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI  949 (1238)
T ss_pred             HHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence            9998874  33345566666666667788888888888752       334566666555555556666665444     


Q ss_pred             -----HHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          490 -----AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       490 -----~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  529 (571)
                           .+++.....|++..+|...+..+.+.+.+.+|.+...+..
T Consensus       950 ~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli  994 (1238)
T KOG1127|consen  950 SSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI  994 (1238)
T ss_pred             hhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence                 4444455668889999999999999999999988877654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.86  E-value=3.8e-05  Score=76.49  Aligned_cols=259  Identities=12%  Similarity=0.037  Sum_probs=166.8

Q ss_pred             CChhHHHHHHH--HhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhC-C-------C-CCCc
Q 008276           62 SNPSIGLKLMR--TYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH-G-------F-DPDC  130 (571)
Q Consensus        62 ~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g-------~-~p~~  130 (571)
                      .|..+...++.  .|.-.|+.+.|.+..+.++.  -..|..+.+.|.+..+.+-|.-.+-.|... |       . .|+ 
T Consensus       724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-  800 (1416)
T KOG3617|consen  724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-  800 (1416)
T ss_pred             cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence            46666677654  56778999999998887764  467999999999998888777666555321 1       1 222 


Q ss_pred             ccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCC-CCchhHHHHHHHHHhC
Q 008276          131 YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS-KDVVTWNSMVAGYAQN  209 (571)
Q Consensus       131 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~  209 (571)
                      .+=..+.-.....|.+++|+.++++-.+..         .|=..|-..|.+++|.++-+.-.. .=..+|......+-..
T Consensus       801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear  871 (1416)
T KOG3617|consen  801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR  871 (1416)
T ss_pred             chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence            222233334467899999999999887643         344567788999999998765433 1234677777777888


Q ss_pred             CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHH
Q 008276          210 GRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQ  289 (571)
Q Consensus       210 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  289 (571)
                      ++.+.|++.|++...    |--..+..|.. +       ....+...++..  |...|.-....+-..|+.+.|+.+|..
T Consensus       872 ~Di~~AleyyEK~~~----hafev~rmL~e-~-------p~~~e~Yv~~~~--d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  872 RDIEAALEYYEKAGV----HAFEVFRMLKE-Y-------PKQIEQYVRRKR--DESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             ccHHHHHHHHHhcCC----hHHHHHHHHHh-C-------hHHHHHHHHhcc--chHHHHHHHHHHhcccchHHHHHHHHH
Confidence            999999999987532    11111111110 0       222233333333  334455555566667888888888876


Q ss_pred             HHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 008276          290 MEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR  361 (571)
Q Consensus       290 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  361 (571)
                      .+.         |-.+++..+-.|+.++|-++-++      .-|....-.|...|-..|++.+|..+|.+..
T Consensus       938 A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  938 AKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             hhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            653         44556666777777777777654      2244445557777777778777777776653

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.82  E-value=1.5e-07  Score=77.17  Aligned_cols=123  Identities=7%  Similarity=-0.003  Sum_probs=85.3

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 008276          385 VALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-P  463 (571)
Q Consensus       385 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~  463 (571)
                      ..++++..+  +.|+.  +......+...|++++|...|+.+..  --+.+...+..+..++...|++++|...|++. .
T Consensus        13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~   86 (144)
T PRK15359         13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM   86 (144)
T ss_pred             HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            345555555  44543  34456666777888888888877765  23445667777777777888888888887776 4


Q ss_pred             CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 008276          464 MEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA  513 (571)
Q Consensus       464 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  513 (571)
                      ..| +...+..+..++...|++++|+..|+++++..|+++..+...+.+..
T Consensus        87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~  137 (144)
T PRK15359         87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI  137 (144)
T ss_pred             cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            445 56677777777777888888888888888888877777776665543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.82  E-value=1.3e-05  Score=71.53  Aligned_cols=256  Identities=11%  Similarity=0.039  Sum_probs=186.0

Q ss_pred             HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHH-HHHHHhccCCchHHHHHHHHHHHHcCCCCC--hhHH----------
Q 008276          271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA-SVLPACGDLSALLLGRKIHRYVERKKLQPN--LRLE----------  337 (571)
Q Consensus       271 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~----------  337 (571)
                      ...|...|+...|+.=+...++  .+||-..-. .-...+.+.|.++.|..-|+.+++.....+  ...+          
T Consensus        79 aT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~  156 (504)
T KOG0624|consen   79 ATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHW  156 (504)
T ss_pred             HHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHH
Confidence            4578888888888888888877  478754332 122346789999999999999987643211  1111          


Q ss_pred             --HHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 008276          338 --NALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH  412 (571)
Q Consensus       338 --~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~  412 (571)
                        ...+..+...|+...|+.....+.+   -|...|..-..+|...|++..|+.=++..-+.. .-|..++.-+-..+..
T Consensus       157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~  235 (504)
T KOG0624|consen  157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYT  235 (504)
T ss_pred             HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHh
Confidence              1234455667899999998888775   477788888999999999999999888877642 2345566666777788


Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHhC-CCCCC--HHH---HHH
Q 008276          413 AGLLEEGRYYFKIMTEQYKLVPRIEH----FACL---------VDLLGRAGKVEEAYDLIKQM-PMEPN--ERI---WGS  473 (571)
Q Consensus       413 ~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~l---------~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~---~~~  473 (571)
                      .|+.+.++...++..   .+.||...    |..+         +......++|.++++-.++. ...|.  ...   +..
T Consensus       236 vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~  312 (504)
T KOG0624|consen  236 VGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRV  312 (504)
T ss_pred             hhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehe
Confidence            899988888887776   45676522    2221         22344567777777777665 44554  222   333


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          474 LVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       474 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      +-.++...|++.+|++...+++..+|++..++.--+.+|.-...+++|+.-|+...+.+
T Consensus       313 ~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  313 LCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN  371 (504)
T ss_pred             eeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence            33455668999999999999999999999999999999999999999999998887654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.78  E-value=3.3e-05  Score=85.10  Aligned_cols=325  Identities=9%  Similarity=-0.058  Sum_probs=175.3

Q ss_pred             hcCCChHHHHHHHcccCC----CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCC--C----CCCcc--cHHHHHHHhhc
Q 008276           75 GACGQMVDTRHVFDEITN----KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHG--F----DPDCY--TYPCVLKACSG  142 (571)
Q Consensus        75 ~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~----~p~~~--~~~~li~~~~~  142 (571)
                      ...|+++.+...++.++.    .+..........+...|+++++...++.....-  .    .+...  ....+...+..
T Consensus       385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  464 (903)
T PRK04841        385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN  464 (903)
T ss_pred             HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence            344555555555555431    122222333344455566666666665543320  0    00000  01111122345


Q ss_pred             CCChHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhCCCHHHHHHHHccCCC-------C--CchhHHHHHHHHHhC
Q 008276          143 SNSLLVGLQIHCSVVKVGLDYN----LFNGNGLVAMYGKCGCLKEARRVLNDMPS-------K--DVVTWNSMVAGYAQN  209 (571)
Q Consensus       143 ~~~~~~a~~~~~~~~~~g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~  209 (571)
                      .|+++.|...++.....-...+    ....+.+...+...|++++|...+++...       +  ...++..+...+...
T Consensus       465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~  544 (903)
T PRK04841        465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ  544 (903)
T ss_pred             CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence            5666666666665554211111    12233444455556666666665554432       1  012233444455556


Q ss_pred             CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCC----ChhhHHHHHHHHHHcCCchHHHH
Q 008276          210 GRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNK----NLVSWNVMIAVYANNSMPAEAVD  285 (571)
Q Consensus       210 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~  285 (571)
                      |++++|...+++....                              ......+    ....+..+...+...|++++|..
T Consensus       545 G~~~~A~~~~~~al~~------------------------------~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~  594 (903)
T PRK04841        545 GFLQAAYETQEKAFQL------------------------------IEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQ  594 (903)
T ss_pred             CCHHHHHHHHHHHHHH------------------------------HHHhccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            6666666665554331                              0100000    12234455667777899999999


Q ss_pred             HHHHHHHCC--CCCC--HHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCC-hhHH-----HHHHHHHHhcCCHHHHHH
Q 008276          286 LYLQMEVHG--IEPN--AISVASVLPACGDLSALLLGRKIHRYVERKKLQPN-LRLE-----NALVDMYAKCGSLTEART  355 (571)
Q Consensus       286 ~~~~m~~~g--~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~~~~~a~~  355 (571)
                      .+.+.....  ..+.  ...+..+...+...|+++.|...+........... ...+     ...+..+...|+.+.|..
T Consensus       595 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~  674 (903)
T PRK04841        595 CARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAAN  674 (903)
T ss_pred             HHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHH
Confidence            988875431  1122  23344455567788999999998888765311111 1111     112244556789999999


Q ss_pred             HHhhCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhhcCCCHHHHHHHH
Q 008276          356 VFDQMRCQDV-------VSWTSMISAYGMSGQGYDAVALFSKMLMS----GLCPDS-IAFVSVLSACSHAGLLEEGRYYF  423 (571)
Q Consensus       356 ~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~  423 (571)
                      .+.....+..       ..+..+..++...|++++|...+++....    |..++. .+...+..++...|+.++|...+
T Consensus       675 ~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L  754 (903)
T PRK04841        675 WLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVL  754 (903)
T ss_pred             HHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9877664221       11345667788899999999999887653    333322 35666677788999999999999


Q ss_pred             HHHHHh
Q 008276          424 KIMTEQ  429 (571)
Q Consensus       424 ~~~~~~  429 (571)
                      .+..+.
T Consensus       755 ~~Al~l  760 (903)
T PRK04841        755 LEALKL  760 (903)
T ss_pred             HHHHHH
Confidence            988774

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.76  E-value=2.7e-07  Score=75.65  Aligned_cols=107  Identities=11%  Similarity=-0.006  Sum_probs=92.6

Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 008276          421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLA  498 (571)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  498 (571)
                      .++++..+   +.|+  .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|+..|+++.+++
T Consensus        14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~   88 (144)
T PRK15359         14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD   88 (144)
T ss_pred             HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            45555543   2344  3556788899999999999999988 5566 78889999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          499 PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       499 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      |+++.++..++.++...|++++|+..+++..+..
T Consensus        89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359         89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999987655

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.76  E-value=3e-05  Score=75.24  Aligned_cols=266  Identities=11%  Similarity=-0.013  Sum_probs=168.7

Q ss_pred             hhhHHHHHHHHHHcCCchHHHHHHHHHHHCC-CCCCHHH-HHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHH--
Q 008276          264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHG-IEPNAIS-VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA--  339 (571)
Q Consensus       264 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--  339 (571)
                      ...|..+...+...|+.+.+...+....... ..++... .......+...|+++.+..+++...+.. +.+...+..  
T Consensus         6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~   84 (355)
T cd05804           6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL   84 (355)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence            4567777788888888888877777655432 1223222 2222334677899999999999998874 334434331  


Q ss_pred             -HHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCC
Q 008276          340 -LVDMYAKCGSLTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL  415 (571)
Q Consensus       340 -l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~  415 (571)
                       ........+....+.+.++....  | .......+...+...|++++|...+++..+.. +.+...+..+...+...|+
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~  163 (355)
T cd05804          85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR  163 (355)
T ss_pred             HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence             11222234566666666665332  2 22344566678889999999999999999952 3345577888889999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHH----H--HHHHHHHhcCCHHH
Q 008276          416 LEEGRYYFKIMTEQYKLVPRI--EHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIW----G--SLVAACCLYSNMDI  486 (571)
Q Consensus       416 ~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~----~--~l~~~~~~~g~~~~  486 (571)
                      +++|..++++........|+.  ..|..+...+...|++++|..++++. ...|....+    +  .++.-+...|....
T Consensus       164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~  243 (355)
T cd05804         164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV  243 (355)
T ss_pred             HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence            999999999988642222333  34567888999999999999999987 223311111    1  22222333443332


Q ss_pred             HHHH---HHHHHhhCCC--CchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276          487 GILA---ADHIFHLAPN--QSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       487 A~~~---~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                      +...   ........|.  ........+.++...|+.++|...++.+...
T Consensus       244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~  293 (355)
T cd05804         244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR  293 (355)
T ss_pred             HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            2222   1111111122  1222336777888999999999999998754

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.74  E-value=1.7e-06  Score=90.48  Aligned_cols=228  Identities=13%  Similarity=0.140  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHHHHHc-CCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHH
Q 008276          299 AISVASVLPACGDLSALLLGRKIHRYVERK-KLQP---NLRLENALVDMYAKCGSLTEARTVFDQMRC--QDVVSWTSMI  372 (571)
Q Consensus       299 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li  372 (571)
                      ...|...|......++.+.|.++.++++.. ++.-   -...|.++++.-..-|.-+...++|+++.+  .....|..|.
T Consensus      1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred             chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            355666666666777777777777776642 2111   123455555555555666666677776665  2234566677


Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 008276          373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV  452 (571)
Q Consensus       373 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  452 (571)
                      ..|.+.+.+++|.++|+.|.+. +.-....|...+..+.+.++-+.|..++.++.+.-.-.-........+.+-.+.|+.
T Consensus      1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred             HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            7777777777777777777664 344455666677777777777777777777665311111234445555666667777


Q ss_pred             HHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCchh-HHHHHHHHHhcCCHHHHHHHHHH
Q 008276          453 EEAYDLIKQM--PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA--PNQSGY-YVLLSNIYAKAGRWGDVKRVRKF  527 (571)
Q Consensus       453 ~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~  527 (571)
                      +.+..+|+..  ..+.....|+.++..-.++|+.+.+..+|++++.+.  |..... |..+...-...|+-+.+..+-.+
T Consensus      1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKAR 1696 (1710)
T ss_pred             hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence            7777777765  222255667777777777777777777777777655  333333 33333322334554444444333

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.71  E-value=9e-07  Score=86.69  Aligned_cols=212  Identities=12%  Similarity=0.000  Sum_probs=159.7

Q ss_pred             HHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCC
Q 008276          303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--QDVVSWTSMISAYGMSGQ  380 (571)
Q Consensus       303 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~  380 (571)
                      ..+...+...|-...|..+++.+.         .+...+.+|+..|+..+|..+..+-.+  |+...|..+.+......-
T Consensus       402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~  472 (777)
T KOG1128|consen  402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL  472 (777)
T ss_pred             HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence            344455666677777777776544         345577788888888888777665543  677778888887777777


Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008276          381 GYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK  460 (571)
Q Consensus       381 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  460 (571)
                      +++|.++.+.....       .-..+.....+.++++++.+.|+.-.+.  .+....+|..+..+..+.++++.|.+.|.
T Consensus       473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~  543 (777)
T KOG1128|consen  473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFH  543 (777)
T ss_pred             HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence            78888877654332       1112222234468889999988887763  23455678888888889999999999998


Q ss_pred             hC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          461 QM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       461 ~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      .. ...| +...|+.+-.+|.+.++-.+|...++++.+-+-.+..+|....-...+.|.+++|.+.+.++.+..
T Consensus       544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence            77 6677 567899999999999999999999999999888888889888888899999999999999987543

>PLN02789 farnesyltranstransferase

Probab=98.70  E-value=1e-05  Score=75.50  Aligned_cols=177  Identities=12%  Similarity=0.024  Sum_probs=110.6

Q ss_pred             CHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHH
Q 008276          349 SLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQ--GYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYY  422 (571)
Q Consensus       349 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~  422 (571)
                      ++++++..++.+.+   .+...|+.....+.+.|+  .++++.+++++.+.  .| |..+|....-++...|+++++++.
T Consensus        87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~  164 (320)
T PLN02789         87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEY  164 (320)
T ss_pred             hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHH
Confidence            34555555555443   233344444333344443  25667777777763  33 455777776677777778888888


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHH
Q 008276          423 FKIMTEQYKLVPRIEHFACLVDLLGRA---GK----VEEAYDLIKQM-PMEP-NERIWGSLVAACCLY----SNMDIGIL  489 (571)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----g~~~~A~~  489 (571)
                      ++++.+.  -+.+...|+....++.+.   |+    .+++++...++ ...| +...|+.+...+...    ++..+|..
T Consensus       165 ~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~  242 (320)
T PLN02789        165 CHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSS  242 (320)
T ss_pred             HHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHH
Confidence            8877764  233445555554444433   22    24556665444 5556 677888777777662    44567888


Q ss_pred             HHHHHHhhCCCCchhHHHHHHHHHhcC------------------CHHHHHHHHHHHH
Q 008276          490 AADHIFHLAPNQSGYYVLLSNIYAKAG------------------RWGDVKRVRKFMN  529 (571)
Q Consensus       490 ~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~  529 (571)
                      ++.++...+|+++.+...|+..|....                  ..++|..+++.+.
T Consensus       243 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~  300 (320)
T PLN02789        243 VCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE  300 (320)
T ss_pred             HHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence            888888888888889999999988642                  3467888888873

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.69  E-value=3.3e-06  Score=72.92  Aligned_cols=155  Identities=14%  Similarity=0.126  Sum_probs=105.9

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 008276          369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR  448 (571)
Q Consensus       369 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  448 (571)
                      ..+-..+...|+-+....+..+.... ...|.......+......|++..|...+.+...  .-++|...|+.+.-+|.+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq  146 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ  146 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence            44455566666666666666654432 222444455566667777777777777777765  556677777777777777


Q ss_pred             cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 008276          449 AGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRK  526 (571)
Q Consensus       449 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  526 (571)
                      .|++++|..-|.+. .+.| ++..++.+...+.-.||.+.|..++.......+.+..+-..++.+....|++++|..+..
T Consensus       147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence            77777777777666 4444 455667777777777777777777777777777777777777777777777777776654

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.66  E-value=0.00044  Score=66.01  Aligned_cols=161  Identities=11%  Similarity=0.120  Sum_probs=108.3

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008276          366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD  444 (571)
Q Consensus       366 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  444 (571)
                      .+|..++..-.+......|..+|.++.+.+..+ +...+++++..+|. ++.+-|.++|+.-.+.++  .++..-...+.
T Consensus       367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~Yld  443 (656)
T KOG1914|consen  367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG--DSPEYVLKYLD  443 (656)
T ss_pred             eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence            356677777777777778888888888777666 45566667666554 667778888877666433  33344456677


Q ss_pred             HHHhcCCHHHHHHHHHhC---CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc----hhHHHHHHHHHhc
Q 008276          445 LLGRAGKVEEAYDLIKQM---PMEP--NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS----GYYVLLSNIYAKA  515 (571)
Q Consensus       445 ~~~~~g~~~~A~~~~~~~---~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~  515 (571)
                      -+...|+-..|..+|++.   .+.|  ....|..++.--..-|+...+.++-++.....|.+.    ..-..+++-|.-.
T Consensus       444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~  523 (656)
T KOG1914|consen  444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL  523 (656)
T ss_pred             HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence            777777777888888776   2233  345788888777778888888888777777666332    2344556666667


Q ss_pred             CCHHHHHHHHHHHH
Q 008276          516 GRWGDVKRVRKFMN  529 (571)
Q Consensus       516 g~~~~A~~~~~~m~  529 (571)
                      +.+..-..-++.|-
T Consensus       524 d~~~c~~~elk~l~  537 (656)
T KOG1914|consen  524 DLYPCSLDELKFLG  537 (656)
T ss_pred             ccccccHHHHHhhh
Confidence            77766666666653

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.64  E-value=4.8e-06  Score=85.69  Aligned_cols=160  Identities=11%  Similarity=0.025  Sum_probs=112.7

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 008276          364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACL  442 (571)
Q Consensus       364 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  442 (571)
                      ++..+..|.....+.|.+++|..+++...+  +.|+.. ....+...+.+.+++++|...+++...  .-+.+......+
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~  160 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE  160 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence            467777888888888888888888888888  566654 666677778888888888888888876  334455667777


Q ss_pred             HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHH
Q 008276          443 VDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGD  520 (571)
Q Consensus       443 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  520 (571)
                      ..++...|++++|.++|+++ ...| +..++..+..++...|+.++|...|+++++...+-...|..+.      ++...
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~  234 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLNA  234 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHHH
Confidence            88888888888888888887 3344 4677778888888888888888888888887644444443332      22333


Q ss_pred             HHHHHHHHHhCCC
Q 008276          521 VKRVRKFMNSKGI  533 (571)
Q Consensus       521 A~~~~~~m~~~~~  533 (571)
                      -...++++.-.+.
T Consensus       235 ~~~~~~~~~~~~~  247 (694)
T PRK15179        235 DLAALRRLGVEGD  247 (694)
T ss_pred             HHHHHHHcCcccc
Confidence            3445555543333

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.64  E-value=4.6e-06  Score=72.35  Aligned_cols=157  Identities=10%  Similarity=0.099  Sum_probs=118.2

Q ss_pred             HHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHH
Q 008276          341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR  420 (571)
Q Consensus       341 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~  420 (571)
                      +..|...|+++.+....+.+..+.        ..+...++.++++..++...+. -+.|...|..+...|...|++++|.
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~   93 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNAL   93 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            346777788777655543332221        0122366778888888888874 2446778999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          421 YYFKIMTEQYKLVPRIEHFACLVDLL-GRAGK--VEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIF  495 (571)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  495 (571)
                      ..|++..+.  .+.+...+..+..++ ...|+  .++|.+++++. ...| +...+..+...+...|++++|+..|++++
T Consensus        94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL  171 (198)
T PRK10370         94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL  171 (198)
T ss_pred             HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999873  345667788888864 67777  59999999988 5566 67788888889999999999999999999


Q ss_pred             hhCCCCchhHHHH
Q 008276          496 HLAPNQSGYYVLL  508 (571)
Q Consensus       496 ~~~p~~~~~~~~l  508 (571)
                      +..|++..-+..+
T Consensus       172 ~l~~~~~~r~~~i  184 (198)
T PRK10370        172 DLNSPRVNRTQLV  184 (198)
T ss_pred             hhCCCCccHHHHH
Confidence            9998776554433

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.64  E-value=1e-05  Score=84.93  Aligned_cols=199  Identities=12%  Similarity=0.186  Sum_probs=118.5

Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 008276          332 PNLRLENALVDMYAKCGSLTEARTVFDQMRC--------QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF  403 (571)
Q Consensus       332 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~  403 (571)
                      .+...|-..|......++.++|++++++...        .-...|.+++......|.-+...++|+++.+.  --....|
T Consensus      1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred             CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence            3344555566666666666666666666543        12234666666555566666666666666652  2223356


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHH
Q 008276          404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN---ERIWGSLVAACC  479 (571)
Q Consensus       404 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~  479 (571)
                      ..|...|.+.+.+++|.++++.|.++++  .....|...+..+.+.++-+.|.+++.++ ..-|.   .....-.+..-.
T Consensus      1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence            6666666666666677777776666444  44556666666666666666666666655 22232   222233333344


Q ss_pred             hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008276          480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK  534 (571)
Q Consensus       480 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  534 (571)
                      +.||.+++..+|+-.+...|.....|..+++.-.+.|+.+.++.+|++..+.++.
T Consensus      1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred             hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence            5666666666666666666666666666666666666666666776666666554

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.64  E-value=0.00086  Score=68.08  Aligned_cols=66  Identities=18%  Similarity=0.221  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHhcCCHH---HHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008276          470 IWGSLVAACCLYSNMD---IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKK  535 (571)
Q Consensus       470 ~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~  535 (571)
                      +.+.|+..+.+.++..   +|+-+++.....+|.|..+-..++.+|.-.|-+..|.++++.+.-+.|..
T Consensus       438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~  506 (932)
T KOG2053|consen  438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQT  506 (932)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhh
Confidence            3456677777776655   77778888888888888888888888888899999998888876665553

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.60  E-value=2.3e-06  Score=83.95  Aligned_cols=189  Identities=18%  Similarity=0.205  Sum_probs=160.7

Q ss_pred             CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008276          329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS  408 (571)
Q Consensus       329 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~  408 (571)
                      +.+|-...-..+...+...|-...|..+|+++     ..|...|.+|+..|+..+|..+..+-.+  -+|++..|..+.+
T Consensus       393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD  465 (777)
T KOG1128|consen  393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD  465 (777)
T ss_pred             CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence            34566666677888999999999999999885     4678888999999999999999998888  5789999999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 008276          409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDI  486 (571)
Q Consensus       409 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~  486 (571)
                      ......-+++|+++.+.....        .-..+.....+.++++++.+.|+.- .+.| ...+|-.+..+..+.++++.
T Consensus       466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~  537 (777)
T KOG1128|consen  466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA  537 (777)
T ss_pred             hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence            888888899999998876542        1122333344579999999999865 6666 67789889989999999999


Q ss_pred             HHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          487 GILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       487 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      |.+.|.+...++|++...|+.+..+|.+.|+..+|...+++..+-+
T Consensus       538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn  583 (777)
T KOG1128|consen  538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN  583 (777)
T ss_pred             HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999998766

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.58  E-value=5.5e-06  Score=79.25  Aligned_cols=251  Identities=12%  Similarity=0.008  Sum_probs=178.1

Q ss_pred             HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 008276          271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL  350 (571)
Q Consensus       271 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  350 (571)
                      ..-+.+.|+..+|.-.|+..+... +-+...|..|.......++-..|+..+++..+.+ +.+......|.-.|...|.-
T Consensus       292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q  369 (579)
T KOG1125|consen  292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ  369 (579)
T ss_pred             HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence            345667888888888888877664 4456778788777888888888888888888776 55667777777788888887


Q ss_pred             HHHHHHHhhCCCCC-hhHHHHHH---------HHHHhcCChHHHHHHHHHH-HHCCCCCCHHHHHHHHHHhhcCCCHHHH
Q 008276          351 TEARTVFDQMRCQD-VVSWTSMI---------SAYGMSGQGYDAVALFSKM-LMSGLCPDSIAFVSVLSACSHAGLLEEG  419 (571)
Q Consensus       351 ~~a~~~~~~~~~~~-~~~~~~li---------~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~l~~~~~~~~~~~~a  419 (571)
                      ..|...|+.-..-. ...|....         ..+..........++|-++ ...+..+|+.....|.-.|--.|++++|
T Consensus       370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra  449 (579)
T KOG1125|consen  370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA  449 (579)
T ss_pred             HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence            88887776542100 00000000         0111112233444444444 4455446777777777778889999999


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 008276          420 RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNE-RIWGSLVAACCLYSNMDIGILAADHIFHL  497 (571)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  497 (571)
                      ...|+.+...  -+-|..+||-|.-.++...+.++|+..|.++ .++|+. ..+-.|.-.|...|.+++|...|-.++.+
T Consensus       450 iDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m  527 (579)
T KOG1125|consen  450 VDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM  527 (579)
T ss_pred             HHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence            9999999852  2445678999999999999999999999988 888864 46667888899999999999999998876


Q ss_pred             CCC----------CchhHHHHHHHHHhcCCHHHHHHHH
Q 008276          498 APN----------QSGYYVLLSNIYAKAGRWGDVKRVR  525 (571)
Q Consensus       498 ~p~----------~~~~~~~l~~~~~~~g~~~~A~~~~  525 (571)
                      .+.          +..+|..|=.++.-.++.|-+.++.
T Consensus       528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~  565 (579)
T KOG1125|consen  528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA  565 (579)
T ss_pred             hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence            532          1247888877888888877666543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.57  E-value=7.2e-06  Score=70.84  Aligned_cols=135  Identities=16%  Similarity=0.091  Sum_probs=114.1

Q ss_pred             CCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 008276          396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM--PMEPNERIWGS  473 (571)
Q Consensus       396 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~  473 (571)
                      ..|+......+-..+...|+-+....+......  ..+.+......++....+.|++..|...|++.  .-.+|...|+.
T Consensus        62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~  139 (257)
T COG5010          62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL  139 (257)
T ss_pred             cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence            344333225566777788888888888887654  44556667777999999999999999999998  44558999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          474 LVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       474 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      +..+|.+.|+.+.|...|.+++++.|+++.++..++..|.-.|++++|..++......+
T Consensus       140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~  198 (257)
T COG5010         140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP  198 (257)
T ss_pred             HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999887554

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.56  E-value=9.2e-07  Score=71.01  Aligned_cols=97  Identities=10%  Similarity=0.017  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 008276          436 IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA  513 (571)
Q Consensus       436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  513 (571)
                      ......+...+...|++++|.++|+-+ .+.| +...|-.|..++...|++++|+..|.++..++|+++..+..++.++.
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L  114 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL  114 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            345566777888999999999999988 5667 67788888888999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhCC
Q 008276          514 KAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       514 ~~g~~~~A~~~~~~m~~~~  532 (571)
                      ..|+.+.|++.|+..+...
T Consensus       115 ~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        115 ACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HcCCHHHHHHHHHHHHHHh
Confidence            9999999999999887654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.55  E-value=1.5e-05  Score=75.05  Aligned_cols=116  Identities=19%  Similarity=0.160  Sum_probs=68.6

Q ss_pred             hcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 008276          411 SHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN-ERIWGSLVAACCLYSNMDIGI  488 (571)
Q Consensus       411 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~  488 (571)
                      ...|.+++|+..++.+..  ..+.|+..+....+.+...|+.++|.+.++++ ...|+ ...+-.+..++.+.|++++|+
T Consensus       317 ~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai  394 (484)
T COG4783         317 YLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI  394 (484)
T ss_pred             HHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence            345666666666666654  33444555555566666666666666666665 44454 444455556666666666666


Q ss_pred             HHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276          489 LAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM  528 (571)
Q Consensus       489 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  528 (571)
                      ..++.....+|+++..|..|+.+|...|+..+|.....++
T Consensus       395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~  434 (484)
T COG4783         395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG  434 (484)
T ss_pred             HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            6666666666666666666666666666655555544443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.54  E-value=8.5e-06  Score=73.77  Aligned_cols=183  Identities=16%  Similarity=0.051  Sum_probs=126.8

Q ss_pred             CCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCC-C-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hh---H
Q 008276          296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ-P-NLRLENALVDMYAKCGSLTEARTVFDQMRC--QD-VV---S  367 (571)
Q Consensus       296 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~---~  367 (571)
                      ......+......+...|+++.|...++.+.+.... | ....+..+..++...|++++|...++.+.+  |+ ..   .
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            345567778888899999999999999999876421 1 124667788899999999999999999864  32 22   4


Q ss_pred             HHHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHH
Q 008276          368 WTSMISAYGMS--------GQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEH  438 (571)
Q Consensus       368 ~~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  438 (571)
                      +..+..++.+.        |++++|.+.|+++.+.  .|+.. .+..+.... .   .      .....         ..
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~------~~~~~---------~~  168 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---L------RNRLA---------GK  168 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---H------HHHHH---------HH
Confidence            55556666654        7889999999999884  55543 222221110 0   0      00000         11


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 008276          439 FACLVDLLGRAGKVEEAYDLIKQM-PM---EP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAP  499 (571)
Q Consensus       439 ~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  499 (571)
                      ...+...+.+.|++++|...+++. ..   .| ....+..+..++...|++++|...++.+....|
T Consensus       169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            124667788899999999888877 22   23 356788888899999999999998888776655

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.53  E-value=0.001  Score=63.62  Aligned_cols=389  Identities=13%  Similarity=0.113  Sum_probs=197.8

Q ss_pred             CCChhHHHHHHHHhhcCCChHHHHHHHcccCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHH
Q 008276           61 HSNPSIGLKLMRTYGACGQMVDTRHVFDEITN--K-NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVL  137 (571)
Q Consensus        61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li  137 (571)
                      |-|..+|+.||+-+... ..+++++.++++..  | .+..|..-|..-.+..+++....+|.+....-  .+...|..-|
T Consensus        17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl   93 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL   93 (656)
T ss_pred             CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence            45788888888877766 78888888888765  3 55678888888888888888888888877653  3444454444


Q ss_pred             HHhhc-CCCh----HHHHHHHHHHH-HhCCCCc-hhHHHHHHHH---------HHhCCCHHHHHHHHccCCC-C------
Q 008276          138 KACSG-SNSL----LVGLQIHCSVV-KVGLDYN-LFNGNGLVAM---------YGKCGCLKEARRVLNDMPS-K------  194 (571)
Q Consensus       138 ~~~~~-~~~~----~~a~~~~~~~~-~~g~~~~-~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~-~------  194 (571)
                      ....+ .++.    ....+.|+-.+ +.|.++- -..|+..+..         |....+++...++++++.. |      
T Consensus        94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk  173 (656)
T KOG1914|consen   94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK  173 (656)
T ss_pred             HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence            43322 1221    22223333332 3343332 2345544443         3445567777888887764 2      


Q ss_pred             ---CchhHHHHHHHH-------HhCCCchHHHHHHHHHHH--CCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhC---
Q 008276          195 ---DVVTWNSMVAGY-------AQNGRFDEALDVCREMES--LRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKL---  259 (571)
Q Consensus       195 ---~~~~~~~li~~~-------~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~---  259 (571)
                         |-..|..=|+..       -+...+-.|.++++++..  .|..-...+       .-..+..+--+..+++...   
T Consensus       174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n~I~w  246 (656)
T KOG1914|consen  174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKNWIKW  246 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHHHHHH
Confidence               222332222211       123345667777777653  232211111       0000000000011111000   


Q ss_pred             ---CC-------------------------CChhhHHHHHHHHHHcCC--------------chHHHHHHHHHHHCCCCC
Q 008276          260 ---DN-------------------------KNLVSWNVMIAVYANNSM--------------PAEAVDLYLQMEVHGIEP  297 (571)
Q Consensus       260 ---~~-------------------------~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~m~~~g~~~  297 (571)
                         .+                         -.+..|.--...+...++              .+++..+++.....-..-
T Consensus       247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~  326 (656)
T KOG1914|consen  247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE  326 (656)
T ss_pred             HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence               00                         011111111111122222              233333333333221122


Q ss_pred             CHHHHHHHHHHh---ccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhHHH
Q 008276          298 NAISVASVLPAC---GDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC-----QDVVSWT  369 (571)
Q Consensus       298 ~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~  369 (571)
                      +..+|..+..--   ......+....+++.++..-...-.-+|..++....+..-++.|..+|.++.+     .++..++
T Consensus       327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~  406 (656)
T KOG1914|consen  327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA  406 (656)
T ss_pred             HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence            222232222211   11112444555555555432222234555666666667777777777777764     2556667


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHH
Q 008276          370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI--EHFACLVDLLG  447 (571)
Q Consensus       370 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~  447 (571)
                      +++..||. ++..-|.++|+--.+. ..-++.--...+.-+...++-..+..+|++.... ++.++.  .+|..++..-.
T Consensus       407 A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES  483 (656)
T KOG1914|consen  407 ALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYES  483 (656)
T ss_pred             HHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHH
Confidence            77766663 5667777777764442 2222223334455566667777777777777765 555543  56777777777


Q ss_pred             hcCCHHHHHHHHHhC
Q 008276          448 RAGKVEEAYDLIKQM  462 (571)
Q Consensus       448 ~~g~~~~A~~~~~~~  462 (571)
                      .-|++..+.++-++.
T Consensus       484 ~vGdL~si~~lekR~  498 (656)
T KOG1914|consen  484 NVGDLNSILKLEKRR  498 (656)
T ss_pred             hcccHHHHHHHHHHH
Confidence            777777777776655

>PF12854 PPR_1: PPR repeat

Probab=98.51  E-value=1.7e-07  Score=54.45  Aligned_cols=32  Identities=28%  Similarity=0.456  Sum_probs=21.8

Q ss_pred             CCCCchhHHHHHHHHHHhCCCHHHHHHHHccC
Q 008276          160 GLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM  191 (571)
Q Consensus       160 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  191 (571)
                      |+.||..+|+.||.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            56666666666666666666666666666665

>PF12854 PPR_1: PPR repeat

Probab=98.51  E-value=1.5e-07  Score=54.67  Aligned_cols=34  Identities=18%  Similarity=0.289  Sum_probs=26.8

Q ss_pred             hcCCCChhHHHHHHHHhhcCCChHHHHHHHcccC
Q 008276           58 QHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT   91 (571)
Q Consensus        58 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~   91 (571)
                      .|+.||..+|+.||.+|++.|++++|.++|++|+
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            3677888888888888888888888888887764

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.50  E-value=2.8e-05  Score=67.21  Aligned_cols=150  Identities=9%  Similarity=0.040  Sum_probs=103.4

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---
Q 008276          372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR---  448 (571)
Q Consensus       372 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---  448 (571)
                      ...|++.|++++|++......      +......=+..+.+..+.+.|.+.+++|.+-    .+..+.+.|..++.+   
T Consensus       115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~  184 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLAT  184 (299)
T ss_pred             hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhc
Confidence            445778888888887776511      2222333344456777788888888888642    344555556555543   


Q ss_pred             -cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHH-HH
Q 008276          449 -AGKVEEAYDLIKQM--PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK-RV  524 (571)
Q Consensus       449 -~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~  524 (571)
                       .+...+|.-+|+++  +..|++.+.+....++...|++++|..+++.++..+++++.+...++.+-...|+-.++. +.
T Consensus       185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~  264 (299)
T KOG3081|consen  185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN  264 (299)
T ss_pred             cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence             34677888888888  467788888888888888888888888888888888888888888877777777765544 45


Q ss_pred             HHHHHhC
Q 008276          525 RKFMNSK  531 (571)
Q Consensus       525 ~~~m~~~  531 (571)
                      +.+++..
T Consensus       265 l~QLk~~  271 (299)
T KOG3081|consen  265 LSQLKLS  271 (299)
T ss_pred             HHHHHhc
Confidence            5655543

>PLN02789 farnesyltranstransferase

Probab=98.50  E-value=0.00014  Score=68.04  Aligned_cols=236  Identities=12%  Similarity=0.070  Sum_probs=160.2

Q ss_pred             hHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHhccCC-chHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 008276          266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA-ISVASVLPACGDLS-ALLLGRKIHRYVERKKLQPNLRLENALVDM  343 (571)
Q Consensus       266 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  343 (571)
                      ++..+-..+...++.++|+.+..++++.  .|+. .+|..--.++...| +++++...++.+.+.+ +.+..+|+.....
T Consensus        39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~  115 (320)
T PLN02789         39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL  115 (320)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence            3444555667788999999999999875  4544 45554444555566 5789999999999876 4455567655555


Q ss_pred             HHhcCCH--HHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC---CC
Q 008276          344 YAKCGSL--TEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA---GL  415 (571)
Q Consensus       344 ~~~~~~~--~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---~~  415 (571)
                      +.+.|+.  +++..+++.+.+   .|...|+...-.+...|+++++++.+.++++.+.. |...|+.....+.+.   |.
T Consensus       116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~  194 (320)
T PLN02789        116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG  194 (320)
T ss_pred             HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence            5556653  667788877764   46778888888888999999999999999996543 455666655554443   22


Q ss_pred             ----HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---
Q 008276          416 ----LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA----GKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYS---  482 (571)
Q Consensus       416 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g---  482 (571)
                          .++...+..++...  .+-+...|+.+...+...    ++..+|.+.+.+. ...| +......|+..|+...   
T Consensus       195 ~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~  272 (320)
T PLN02789        195 LEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPT  272 (320)
T ss_pred             ccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccc
Confidence                24567777666653  344556777777777663    3456688888776 4445 5667788888887532   


Q ss_pred             ---------------CHHHHHHHHHHHHhhCCCCchhHHH
Q 008276          483 ---------------NMDIGILAADHIFHLAPNQSGYYVL  507 (571)
Q Consensus       483 ---------------~~~~A~~~~~~~~~~~p~~~~~~~~  507 (571)
                                     ..++|..+++.+.+.+|--...|..
T Consensus       273 ~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~  312 (320)
T PLN02789        273 AEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWAW  312 (320)
T ss_pred             hhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHHH
Confidence                           2366888888776666755545443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.48  E-value=2.5e-05  Score=81.32  Aligned_cols=229  Identities=11%  Similarity=0.096  Sum_probs=130.8

Q ss_pred             CChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHH-HHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHH
Q 008276          262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAIS-VASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL  340 (571)
Q Consensus       262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  340 (571)
                      .+...+..|+..+...+++++|.++.+...+.  .|+... |..+...+.+.++...+..+                 .+
T Consensus        29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~   89 (906)
T PRK14720         29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL   89 (906)
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence            45678889999999999999999999977664  454432 22222244444444433333                 22


Q ss_pred             HHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHH
Q 008276          341 VDMYAKCGSLTEARTVFDQMRC--QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE  418 (571)
Q Consensus       341 ~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~  418 (571)
                      +.......++..+..+...+..  .+...+..+..+|-+.|+.++|...|+++++.. +-|....+.+...++.. ++++
T Consensus        90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K  167 (906)
T PRK14720         90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK  167 (906)
T ss_pred             hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence            2223333333222333333322  233355666677777777777777777777743 22455666666666666 7777


Q ss_pred             HHHHHHHHHHhcCCC--CC--HHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008276          419 GRYYFKIMTEQYKLV--PR--IEHFACLVDLLGRAGKVEEAYDLIKQM----PMEPNERIWGSLVAACCLYSNMDIGILA  490 (571)
Q Consensus       419 a~~~~~~~~~~~~~~--~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~  490 (571)
                      |.+++.++...+-..  ++  ...|..++.  ....+++.-..+.+++    +..--..++-.+-..|...+++++++.+
T Consensus       168 A~~m~~KAV~~~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i  245 (906)
T PRK14720        168 AITYLKKAIYRFIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI  245 (906)
T ss_pred             HHHHHHHHHHHHHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence            777766665431000  00  001111111  0111222222222222    2222334444555667788899999999


Q ss_pred             HHHHHhhCCCCchhHHHHHHHHH
Q 008276          491 ADHIFHLAPNQSGYYVLLSNIYA  513 (571)
Q Consensus       491 ~~~~~~~~p~~~~~~~~l~~~~~  513 (571)
                      ++.+++.+|.|..+..-++.+|.
T Consensus       246 LK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        246 LKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHhcCCcchhhHHHHHHHHH
Confidence            99999999999999999999887

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.46  E-value=3e-06  Score=69.14  Aligned_cols=98  Identities=12%  Similarity=0.106  Sum_probs=47.4

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 008276          403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCL  480 (571)
Q Consensus       403 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~  480 (571)
                      ...+...+...|++++|.+.++.+...  .+.+...+..+...+...|++++|...+++. ...| +...+..+...+..
T Consensus        20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        20 IYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            333444445555555555555555442  1233444445555555555555555555544 2223 33444444444555


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCc
Q 008276          481 YSNMDIGILAADHIFHLAPNQS  502 (571)
Q Consensus       481 ~g~~~~A~~~~~~~~~~~p~~~  502 (571)
                      .|++++|+..++++.+.+|++.
T Consensus        98 ~g~~~~A~~~~~~al~~~p~~~  119 (135)
T TIGR02552        98 LGEPESALKALDLAIEICGENP  119 (135)
T ss_pred             cCCHHHHHHHHHHHHHhccccc
Confidence            5555555555555555555443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.44  E-value=2.7e-05  Score=66.76  Aligned_cols=184  Identities=11%  Similarity=0.112  Sum_probs=143.8

Q ss_pred             hcCCHHHHHHHHhhCCC--------CChh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHhhcCCC
Q 008276          346 KCGSLTEARTVFDQMRC--------QDVV-SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV-LSACSHAGL  415 (571)
Q Consensus       346 ~~~~~~~a~~~~~~~~~--------~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-~~~~~~~~~  415 (571)
                      ...+.++..+++.++..        ++.. .|..++-+....|+.+-|...++.+... + |++.-...+ ..-+...|+
T Consensus        24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~  101 (289)
T KOG3060|consen   24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGN  101 (289)
T ss_pred             cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhc
Confidence            45678888888887752        3333 3566666778889999999999999885 4 555432222 223456799


Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008276          416 LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM--PMEPNERIWGSLVAACCLYSNMDIGILAADH  493 (571)
Q Consensus       416 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  493 (571)
                      +++|.++++.+.++  -+.|..++.--+-+.-..|+.-+|++-+.+.  .+-.|...|..+...|...|++++|.-.+++
T Consensus       102 ~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE  179 (289)
T KOG3060|consen  102 YKEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEE  179 (289)
T ss_pred             hhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence            99999999999985  3556677777777777788887888777666  5566999999999999999999999999999


Q ss_pred             HHhhCCCCchhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCC
Q 008276          494 IFHLAPNQSGYYVLLSNIYAKAG---RWGDVKRVRKFMNSKGI  533 (571)
Q Consensus       494 ~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~  533 (571)
                      ++=..|-++..+..+++.+.-.|   +++-|++++.+..+-..
T Consensus       180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  180 LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            99999999999999999887765   56678888988876654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.44  E-value=0.0002  Score=67.69  Aligned_cols=136  Identities=19%  Similarity=0.145  Sum_probs=94.1

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCC
Q 008276          374 AYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR-IEHFACLVDLLGRAGK  451 (571)
Q Consensus       374 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~  451 (571)
                      .+...|.+++|+..++.++..  .| |+..+......+...++.++|.+.++++...   .|+ ....-.+..+|.+.|+
T Consensus       315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~  389 (484)
T COG4783         315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGK  389 (484)
T ss_pred             HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCC
Confidence            445677888888888887774  44 4445555566777888888888888888753   344 4556677788888888


Q ss_pred             HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          452 VEEAYDLIKQM--PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       452 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  529 (571)
                      +.+|..+++..  ..+.|+..|..|..+|...|+..++....                 ++.|.-.|++++|...+....
T Consensus       390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~~A~  452 (484)
T COG4783         390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLMRAS  452 (484)
T ss_pred             hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHHHHH
Confidence            88888888776  33337778888888888888777665543                 344566666666666666655


Q ss_pred             hC
Q 008276          530 SK  531 (571)
Q Consensus       530 ~~  531 (571)
                      +.
T Consensus       453 ~~  454 (484)
T COG4783         453 QQ  454 (484)
T ss_pred             Hh
Confidence            44

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.41  E-value=8.3e-06  Score=77.56  Aligned_cols=124  Identities=13%  Similarity=0.145  Sum_probs=103.0

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 008276          401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAAC  478 (571)
Q Consensus       401 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~  478 (571)
                      .....++..+...++++.|..+++++.+.   .|+.  ...+++.+...++-.+|.+++++. ...| +...+..-...|
T Consensus       170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL  244 (395)
T PF09295_consen  170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL  244 (395)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34455667777788999999999998865   3554  345788888888888999988887 3344 666677777778


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          479 CLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       479 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  529 (571)
                      ...++++.|+.+.+++.+..|++..+|..|+.+|.+.|++++|+-.++.+.
T Consensus       245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            899999999999999999999999999999999999999999999998876

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.38  E-value=0.00011  Score=75.82  Aligned_cols=142  Identities=10%  Similarity=0.037  Sum_probs=115.1

Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHH
Q 008276          330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI-AFVS  405 (571)
Q Consensus       330 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~  405 (571)
                      ...+...+..|.......|.+++|..+++.+.+  | +...+..++..+.+.+++++|+..+++...  ..|+.. ....
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~  159 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL  159 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence            456688888899999999999999999999875  5 455678888899999999999999999988  456544 6777


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 008276          406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM--PMEPNERIWGSLV  475 (571)
Q Consensus       406 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~  475 (571)
                      +..++...|++++|..+|+++..  ..+.+...+..+..++...|+.++|...|++.  ...|....|+.++
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~  229 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL  229 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence            77888899999999999999986  33445678888999999999999999999987  3345555555444

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=9.7e-05  Score=63.50  Aligned_cols=202  Identities=13%  Similarity=0.080  Sum_probs=151.1

Q ss_pred             ccCCchHHHHHHHHHHHH---cC-CCCChh-HHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh-hHHHHHHHHHHhcCCh
Q 008276          310 GDLSALLLGRKIHRYVER---KK-LQPNLR-LENALVDMYAKCGSLTEARTVFDQMRC--QDV-VSWTSMISAYGMSGQG  381 (571)
Q Consensus       310 ~~~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~  381 (571)
                      ....+.++..+++..+..   .| ..++.. .|..++-+....|+.+-|...++.+..  |.. ..-..-...+-..|.+
T Consensus        23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~  102 (289)
T KOG3060|consen   23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNY  102 (289)
T ss_pred             ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhch
Confidence            345578899999988874   34 445553 455666677888999999999988764  322 2222222234457899


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 008276          382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQ  461 (571)
Q Consensus       382 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  461 (571)
                      ++|+++|+.+.+.+ +.|..++..=+...-..|+.-+|++-+....+  .+..|...|.-+.+.|...|++++|.--+++
T Consensus       103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE  179 (289)
T KOG3060|consen  103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEE  179 (289)
T ss_pred             hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence            99999999999975 44666777766667777888899999998888  6788999999999999999999999999999


Q ss_pred             C-CCCC-CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 008276          462 M-PMEP-NERIWGSLVAACCL---YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK  514 (571)
Q Consensus       462 ~-~~~p-~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  514 (571)
                      + -+.| ++..+..+...+..   ..+.+-|.+.|.+++++.|.+...+..+..+...
T Consensus       180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~  237 (289)
T KOG3060|consen  180 LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSA  237 (289)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence            8 4456 66677777776554   3467789999999999999776666665444333

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.35  E-value=0.00023  Score=61.70  Aligned_cols=155  Identities=13%  Similarity=0.096  Sum_probs=85.6

Q ss_pred             HHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----CCCH
Q 008276          341 VDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH----AGLL  416 (571)
Q Consensus       341 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~  416 (571)
                      ...|+..|++++|.+......  +....-.=...+.+..+++-|...+++|.+  +. +..|.+.|..++.+    .+.+
T Consensus       115 a~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~--id-ed~tLtQLA~awv~la~ggek~  189 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ--ID-EDATLTQLAQAWVKLATGGEKI  189 (299)
T ss_pred             hHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cc-hHHHHHHHHHHHHHHhccchhh
Confidence            345566666666666665522  222222223344555666667777777666  22 44455555555433    3456


Q ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 008276          417 EEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM--PMEPNERIWGSLVAACCLYSNM-DIGILAADH  493 (571)
Q Consensus       417 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~  493 (571)
                      ..|.-+|+++.+  ...|+..+.+....+....|++++|..++++.  ....++.+...++..-...|.. +-..+.+.+
T Consensus       190 qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q  267 (299)
T KOG3081|consen  190 QDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ  267 (299)
T ss_pred             hhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence            667777777765  45666666666666666777777777777666  2223455554444444444433 344455555


Q ss_pred             HHhhCCCCc
Q 008276          494 IFHLAPNQS  502 (571)
Q Consensus       494 ~~~~~p~~~  502 (571)
                      .....|.++
T Consensus       268 Lk~~~p~h~  276 (299)
T KOG3081|consen  268 LKLSHPEHP  276 (299)
T ss_pred             HHhcCCcch
Confidence            555556543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.35  E-value=2e-05  Score=64.20  Aligned_cols=98  Identities=20%  Similarity=0.291  Sum_probs=83.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 008276          435 RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY  512 (571)
Q Consensus       435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  512 (571)
                      +......+...+...|++++|.+.++++ ...| +...|..+...+...|++++|...++++.+.+|+++..+..++.+|
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~   95 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL   95 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            3455667788888999999999999887 4445 6778888888888999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhCC
Q 008276          513 AKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       513 ~~~g~~~~A~~~~~~m~~~~  532 (571)
                      ...|++++|...+++..+..
T Consensus        96 ~~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        96 LALGEPESALKALDLAIEIC  115 (135)
T ss_pred             HHcCCHHHHHHHHHHHHHhc
Confidence            99999999999998887654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.25  E-value=5.1e-05  Score=72.28  Aligned_cols=129  Identities=17%  Similarity=0.114  Sum_probs=104.3

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 008276          335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG  414 (571)
Q Consensus       335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~  414 (571)
                      .....|+..+...++++.|.++|+++.+.++.....++..+...++..+|++++.+.... .+-+...+..-...|...+
T Consensus       170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK  248 (395)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence            344566777777889999999999998877777778888888889999999999998874 2335556666677788999


Q ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 008276          415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEP  466 (571)
Q Consensus       415 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p  466 (571)
                      +++.|..+.+++.+.  .+.+..+|..|+.+|...|+++.|+-.++.++..+
T Consensus       249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~  298 (395)
T PF09295_consen  249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPMLT  298 (395)
T ss_pred             CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence            999999999999863  34455799999999999999999999999885443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.24  E-value=0.00044  Score=72.34  Aligned_cols=237  Identities=9%  Similarity=0.028  Sum_probs=143.8

Q ss_pred             CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHH-HHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 008276           93 KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPC-VLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGL  171 (571)
Q Consensus        93 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l  171 (571)
                      .+...|..|+..+...+++++|.++.+...+.  .|+...+-. +...+.+.++...+..+                 .+
T Consensus        29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~   89 (906)
T PRK14720         29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL   89 (906)
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence            46678888999999999999999999977664  566554432 22244455554444433                 22


Q ss_pred             HHHHHhCCCHHHHHHHHccCCC--CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccH
Q 008276          172 VAMYGKCGCLKEARRVLNDMPS--KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV  249 (571)
Q Consensus       172 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~  249 (571)
                      +.......++.-...+...+..  .+..++..+..+|-+.|+.++|..+++++.+..  |+                   
T Consensus        90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~-------------------  148 (906)
T PRK14720         90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RD-------------------  148 (906)
T ss_pred             hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cc-------------------
Confidence            2223333333222333333322  233467788899999999999999999998754  33                   


Q ss_pred             HHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcC
Q 008276          250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK  329 (571)
Q Consensus       250 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  329 (571)
                                   |+.+.|.+...|... +.++|.+++.+....               +...+++..+..+|..+....
T Consensus       149 -------------n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~  199 (906)
T PRK14720        149 -------------NPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN  199 (906)
T ss_pred             -------------cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC
Confidence                         566677777777777 888888887776643               444556777777777777654


Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008276          330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA  409 (571)
Q Consensus       330 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~  409 (571)
                       +.+...+..+.+.....-...           .-+.++-.+-..|...+++++++.+++.+.+.. +-|......++.+
T Consensus       200 -~~d~d~f~~i~~ki~~~~~~~-----------~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~  266 (906)
T PRK14720        200 -SDDFDFFLRIERKVLGHREFT-----------RLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRF  266 (906)
T ss_pred             -cccchHHHHHHHHHHhhhccc-----------hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHH
Confidence             233333333332222211111           223345555666777777888888888877742 2244456666665


Q ss_pred             hh
Q 008276          410 CS  411 (571)
Q Consensus       410 ~~  411 (571)
                      |.
T Consensus       267 y~  268 (906)
T PRK14720        267 YK  268 (906)
T ss_pred             HH
Confidence            54

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.24  E-value=5.4e-05  Score=62.33  Aligned_cols=123  Identities=15%  Similarity=0.136  Sum_probs=68.6

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHH
Q 008276          403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP-RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNE----RIWGSLVA  476 (571)
Q Consensus       403 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~  476 (571)
                      |..++..+ ..++...+...++.+.+.++-.+ .......+...+...|++++|...|+.+ ...|+.    .....+..
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~   93 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR   93 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            44444443 35666666666666665422211 1123334556666667777777766666 212332    23334555


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 008276          477 ACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKF  527 (571)
Q Consensus       477 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  527 (571)
                      .+...|++++|+..++.. ...+..+..+...+.+|.+.|++++|+..|+.
T Consensus        94 ~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   94 ILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            566677777777776552 22234455666777777777777777777764

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.18  E-value=3.1e-06  Score=62.14  Aligned_cols=78  Identities=17%  Similarity=0.273  Sum_probs=54.4

Q ss_pred             cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 008276          449 AGKVEEAYDLIKQM-PMEP---NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRV  524 (571)
Q Consensus       449 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  524 (571)
                      .|+++.|+.+++++ ...|   +...+..+..++.+.|++++|+.++++ .+.+|.+......++.++.+.|++++|+++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            46677777777776 2222   344555577777788888888888887 666676667777778888888888888888


Q ss_pred             HHH
Q 008276          525 RKF  527 (571)
Q Consensus       525 ~~~  527 (571)
                      +++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            765

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.15  E-value=4.3e-05  Score=60.65  Aligned_cols=92  Identities=13%  Similarity=0.015  Sum_probs=44.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHHHHH
Q 008276          440 ACLVDLLGRAGKVEEAYDLIKQM-PMEPN----ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ---SGYYVLLSNI  511 (571)
Q Consensus       440 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~  511 (571)
                      ..++..+.+.|++++|.+.|.++ ...|+    ...+..+..++.+.|+++.|...++.+....|++   +.++..++.+
T Consensus         6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~   85 (119)
T TIGR02795         6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS   85 (119)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence            34444444555555555555444 11221    2233344455555555555555555555554443   3345555555


Q ss_pred             HHhcCCHHHHHHHHHHHHhC
Q 008276          512 YAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       512 ~~~~g~~~~A~~~~~~m~~~  531 (571)
                      +.+.|++++|...++++.+.
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        86 LQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHhCChHHHHHHHHHHHHH
Confidence            55555555555555555544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.10  E-value=6.2e-06  Score=48.73  Aligned_cols=34  Identities=29%  Similarity=0.484  Sum_probs=28.6

Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCc
Q 008276           97 FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDC  130 (571)
Q Consensus        97 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~  130 (571)
                      +||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            6888888888888888888888888888888873

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.10  E-value=4.7e-05  Score=57.39  Aligned_cols=93  Identities=18%  Similarity=0.275  Sum_probs=75.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 008276          439 FACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG  516 (571)
Q Consensus       439 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  516 (571)
                      +..+...+...|++++|...++++ ...| +...+..+...+...|++++|...++++.+..|.+...+..++.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            455677778888888888888876 4444 44667777788888899999999999999988888888999999999999


Q ss_pred             CHHHHHHHHHHHHhC
Q 008276          517 RWGDVKRVRKFMNSK  531 (571)
Q Consensus       517 ~~~~A~~~~~~m~~~  531 (571)
                      ++++|...+++..+.
T Consensus        83 ~~~~a~~~~~~~~~~   97 (100)
T cd00189          83 KYEEALEAYEKALEL   97 (100)
T ss_pred             hHHHHHHHHHHHHcc
Confidence            999999998887654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.08  E-value=0.00033  Score=57.70  Aligned_cols=124  Identities=16%  Similarity=0.117  Sum_probs=84.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH--HHHHHH
Q 008276          368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPD---SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI--EHFACL  442 (571)
Q Consensus       368 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l  442 (571)
                      |..++..+ ..++...+...++.+.+.. +.+   ......+...+...|++++|...|+.+... ...|+.  .....+
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence            44444444 4778888888888888752 222   123444556677888999999999888875 322221  234456


Q ss_pred             HHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276          443 VDLLGRAGKVEEAYDLIKQMPME-PNERIWGSLVAACCLYSNMDIGILAADHI  494 (571)
Q Consensus       443 ~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  494 (571)
                      ...+...|++++|+..++..... .....+......+...|+.++|...|+++
T Consensus        92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            77888889999999888876322 24556667777888899999999888875

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=0.00023  Score=65.65  Aligned_cols=255  Identities=11%  Similarity=0.002  Sum_probs=159.5

Q ss_pred             HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 008276          270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS  349 (571)
Q Consensus       270 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  349 (571)
                      ....+.+..++..|+..+....+.. +-+..-|..-+..+...++++.+.--.+.-.+.. +-........-+++...++
T Consensus        55 ~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~  132 (486)
T KOG0550|consen   55 EGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSD  132 (486)
T ss_pred             hcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHH
Confidence            3445677778888999988888764 2234444444444555556665554444333221 0011122222333333333


Q ss_pred             HHHHHHHHhh---------------CCC-----CChhHHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008276          350 LTEARTVFDQ---------------MRC-----QDVVSWTSM-ISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS  408 (571)
Q Consensus       350 ~~~a~~~~~~---------------~~~-----~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~  408 (571)
                      ..+|.+.++.               +..     |...+|..+ ..++...|++++|...--..++.  .++. .+...++
T Consensus       133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vr  209 (486)
T KOG0550|consen  133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL--DATN-AEALYVR  209 (486)
T ss_pred             HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccch-hHHHHhc
Confidence            3344333321               111     222333333 23556788999998887776663  3222 2333333


Q ss_pred             --HhhcCCCHHHHHHHHHHHHHhcCCCCCHHH-------------HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-----C
Q 008276          409 --ACSHAGLLEEGRYYFKIMTEQYKLVPRIEH-------------FACLVDLLGRAGKVEEAYDLIKQM-PMEP-----N  467 (571)
Q Consensus       409 --~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~  467 (571)
                        ++-..++.+.+...|++...   ..|+...             +..-.+-..+.|++.+|.+.+.+. .+.|     +
T Consensus       210 g~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n  286 (486)
T KOG0550|consen  210 GLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN  286 (486)
T ss_pred             ccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh
Confidence              34557888999999988763   3454322             112233456789999999999877 4444     4


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          468 ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      ...|.....+..+.|+.++|+.--+.+.+++|....++..-+.++...++|++|.+.++...+..
T Consensus       287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  287 AKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            55666667777889999999999999999999999999999999999999999999998876543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.07  E-value=0.00011  Score=58.16  Aligned_cols=105  Identities=12%  Similarity=0.068  Sum_probs=71.3

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 008276          402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP-RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN----ERIWGSLV  475 (571)
Q Consensus       402 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~  475 (571)
                      ++..+...+...|++++|...|+.+...++-.+ ....+..+..++.+.|++++|...++++ ...|+    ...+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            455566666777778888887777766422111 1345556777777888888888887776 22333    44566677


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 008276          476 AACCLYSNMDIGILAADHIFHLAPNQSGYYV  506 (571)
Q Consensus       476 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  506 (571)
                      .++...|+.++|...++++++..|++..+..
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence            7777888888888888888888887765443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.07  E-value=1.7e-05  Score=55.72  Aligned_cols=65  Identities=18%  Similarity=0.193  Sum_probs=59.7

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC-CHHHHHHHHHHHHhC
Q 008276          467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG-RWGDVKRVRKFMNSK  531 (571)
Q Consensus       467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~  531 (571)
                      +...|..+...+...|++++|+..|+++++.+|+++.+|..++.+|...| ++++|++.+++..+.
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            46778889999999999999999999999999999999999999999999 799999999987653

...

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.04  E-value=0.011  Score=54.63  Aligned_cols=258  Identities=18%  Similarity=0.170  Sum_probs=175.9

Q ss_pred             HHHcCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 008276          274 YANNSMPAEAVDLYLQMEVHGIEPNA--ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLT  351 (571)
Q Consensus       274 ~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  351 (571)
                      -.-.|+++.|.+-|+.|..   .|..  .....+.-...+.|+.+.|.++-+..-... +.-.......+...+..|+++
T Consensus       130 al~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd  205 (531)
T COG3898         130 ALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWD  205 (531)
T ss_pred             HHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChH
Confidence            3456999999999999985   3332  223334444567889999988888777654 333466778889999999999


Q ss_pred             HHHHHHhhCCC-----CChh--HHHHHHHHHH---hcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHH
Q 008276          352 EARTVFDQMRC-----QDVV--SWTSMISAYG---MSGQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGR  420 (571)
Q Consensus       352 ~a~~~~~~~~~-----~~~~--~~~~li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~  420 (571)
                      .|+++.+.-..     +++.  .-..|+.+-.   -.-+...|...-.+..+  +.||.. .-..-..++.+.|+..++-
T Consensus       206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~  283 (531)
T COG3898         206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGS  283 (531)
T ss_pred             HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhh
Confidence            99999987653     4432  1222332211   12345666666666555  677765 3444567889999999999


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM----PMEP-NERIWGSLVAACCLYSNMDIGILAADHIF  495 (571)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  495 (571)
                      .+++.+-+.   .|.+.++.  +..+.+.|+.  +..-+++.    ..+| +......+..+....|++..|..--+.+.
T Consensus       284 ~ilE~aWK~---ePHP~ia~--lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~  356 (531)
T COG3898         284 KILETAWKA---EPHPDIAL--LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA  356 (531)
T ss_pred             hHHHHHHhc---CCChHHHH--HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence            999999865   56665442  3333455553  22222222    3456 45566777788889999999999999888


Q ss_pred             hhCCCCchhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCCceE-EEECCEE
Q 008276          496 HLAPNQSGYYVLLSNIYAKA-GRWGDVKRVRKFMNSKGIKKMPGAS-VEMNDQV  547 (571)
Q Consensus       496 ~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~-~~~~~~~  547 (571)
                      ...|. .++|..|+++-... |+-.++...+-+....  ..+|.|+ ..+.+..
T Consensus       357 r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A--PrdPaW~adg~vse~  407 (531)
T COG3898         357 REAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA--PRDPAWTADGVVSEA  407 (531)
T ss_pred             hhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC--CCCCcccccCccccc
Confidence            88884 66888888887655 9999999998887654  4678888 4444433

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.04  E-value=5.5e-05  Score=66.90  Aligned_cols=91  Identities=19%  Similarity=0.228  Sum_probs=44.0

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCH
Q 008276          375 YGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI-EHFACLVDLLGRAGKV  452 (571)
Q Consensus       375 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~  452 (571)
                      +.+.++|++|+..|.+.++  +.| |.+-|..-..+|++.|.++.|++-.+..+.   +.|.. ..|..|..+|...|++
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk~  165 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGKY  165 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCcH
Confidence            3444555555555555555  333 333444445555555555555555444442   22222 3455555555555555


Q ss_pred             HHHHHHHHhC-CCCCCHHH
Q 008276          453 EEAYDLIKQM-PMEPNERI  470 (571)
Q Consensus       453 ~~A~~~~~~~-~~~p~~~~  470 (571)
                      ++|++.|++. .+.|+-.+
T Consensus       166 ~~A~~aykKaLeldP~Ne~  184 (304)
T KOG0553|consen  166 EEAIEAYKKALELDPDNES  184 (304)
T ss_pred             HHHHHHHHhhhccCCCcHH
Confidence            5555555544 44553333

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.03  E-value=0.023  Score=58.20  Aligned_cols=159  Identities=9%  Similarity=0.018  Sum_probs=88.3

Q ss_pred             HHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008276          368 WTSMISAYGMSGQGY---DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD  444 (571)
Q Consensus       368 ~~~li~~~~~~~~~~---~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  444 (571)
                      .+.|++.+-+.++..   +|+-+++.-... -+-|..+-..+++.|+..|-+..|.+.|+.+--+ .+..|...|. +..
T Consensus       439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~~  515 (932)
T KOG2053|consen  439 VNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IFR  515 (932)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HHH
Confidence            566777777777655   344444444442 1224445566778888888888888888877554 5555543332 334


Q ss_pred             HHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CCCchhHHHHHHHHHhcCCH
Q 008276          445 LLGRAGKVEEAYDLIKQM-P-MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA----PNQSGYYVLLSNIYAKAGRW  518 (571)
Q Consensus       445 ~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~  518 (571)
                      .+...|++..+...++.. . ..-+..--.-+|....+.|.+.+..++..--.++.    .....+-......+...++.
T Consensus       516 ~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~  595 (932)
T KOG2053|consen  516 RAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRG  595 (932)
T ss_pred             HHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence            455566777776666554 0 00011111112333345666665555444322222    11223344666677778888


Q ss_pred             HHHHHHHHHHH
Q 008276          519 GDVKRVRKFMN  529 (571)
Q Consensus       519 ~~A~~~~~~m~  529 (571)
                      +.-...++.|.
T Consensus       596 ~q~~~~~~~~~  606 (932)
T KOG2053|consen  596 TQLLKLLESMK  606 (932)
T ss_pred             HHHHHHHhccc
Confidence            88888887766

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=9.7e-05  Score=65.80  Aligned_cols=108  Identities=14%  Similarity=0.064  Sum_probs=89.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCCCchhHHH
Q 008276          433 VPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCL---YSNMDIGILAADHIFHLAPNQSGYYVL  507 (571)
Q Consensus       433 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~  507 (571)
                      +.|...|-.|..+|...|+++.|...|.+. .+.| ++..+..+..++..   .....++..+++++++++|.+..+...
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l  232 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL  232 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence            567788999999999999999999999887 4444 66677777777654   234558999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCceE
Q 008276          508 LSNIYAKAGRWGDVKRVRKFMNSKGIKKMPGAS  540 (571)
Q Consensus       508 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~  540 (571)
                      |+..+...|++.+|...|+.|.+....-+|..+
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~  265 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS  265 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence            999999999999999999999988766666544

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.01  E-value=6.6e-05  Score=71.91  Aligned_cols=108  Identities=14%  Similarity=0.074  Sum_probs=91.3

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 008276          406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSN  483 (571)
Q Consensus       406 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~  483 (571)
                      -...+...|+++.|+..|+++.+.  .+.+...|..+..+|...|++++|+..++++ .+.| +...|..+..+|...|+
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence            345667889999999999999874  3456678888999999999999999999988 5566 67788888999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 008276          484 MDIGILAADHIFHLAPNQSGYYVLLSNIYAKA  515 (571)
Q Consensus       484 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  515 (571)
                      +++|+..|+++++++|+++.+...+..+..+.
T Consensus        86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999998887776654443

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.01  E-value=1.1e-05  Score=47.28  Aligned_cols=33  Identities=24%  Similarity=0.382  Sum_probs=24.7

Q ss_pred             hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 008276           96 VFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDP  128 (571)
Q Consensus        96 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p  128 (571)
                      .+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            467777777777777777777777777777766

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.00  E-value=2.2e-05  Score=54.36  Aligned_cols=59  Identities=19%  Similarity=0.228  Sum_probs=49.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          474 LVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       474 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      +...+...|++++|+..|+++++..|.++.++..++.++...|++++|..+++++.+..
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            45667788999999999999999999999999999999999999999999998887543

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.99  E-value=1.3e-05  Score=47.33  Aligned_cols=33  Identities=30%  Similarity=0.599  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 008276          367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD  399 (571)
Q Consensus       367 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~  399 (571)
                      +|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            688888888888888888888888888888887

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.98  E-value=1.3e-05  Score=46.96  Aligned_cols=33  Identities=33%  Similarity=0.535  Sum_probs=31.4

Q ss_pred             hhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 008276          197 VTWNSMVAGYAQNGRFDEALDVCREMESLRIKP  229 (571)
Q Consensus       197 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  229 (571)
                      .+|+.++.+|.+.|+++.|.++|++|++.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            589999999999999999999999999999987

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.97  E-value=0.00016  Score=69.23  Aligned_cols=101  Identities=11%  Similarity=0.027  Sum_probs=81.0

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 008276          371 MISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA  449 (571)
Q Consensus       371 li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  449 (571)
                      ....+...|++++|++.|+++++.  .| +...|..+..++...|++++|+..++++.+.  .+.+...|..+..+|...
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHh
Confidence            345667889999999999999984  44 4567888888999999999999999999874  344567888899999999


Q ss_pred             CCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 008276          450 GKVEEAYDLIKQM-PMEPNERIWGSLV  475 (571)
Q Consensus       450 g~~~~A~~~~~~~-~~~p~~~~~~~l~  475 (571)
                      |++++|...|++. .+.|+.......+
T Consensus        84 g~~~eA~~~~~~al~l~P~~~~~~~~l  110 (356)
T PLN03088         84 EEYQTAKAALEKGASLAPGDSRFTKLI  110 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            9999999999987 6667554444443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.97  E-value=3e-05  Score=68.48  Aligned_cols=110  Identities=15%  Similarity=0.119  Sum_probs=91.8

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHH
Q 008276          408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN-ERIWGSLVAACCLYSNMD  485 (571)
Q Consensus       408 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~  485 (571)
                      .-+.+.++|.+|+..|.++++  -.+.|...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|+++
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~  166 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE  166 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence            346678999999999999986  34556788888999999999999999988877 77774 568999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHH
Q 008276          486 IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWG  519 (571)
Q Consensus       486 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  519 (571)
                      +|++.|+++++++|++......|-.+-.+.+...
T Consensus       167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  167 EAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999977777765544444433

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.95  E-value=0.0013  Score=53.93  Aligned_cols=132  Identities=10%  Similarity=0.037  Sum_probs=85.6

Q ss_pred             CCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHH
Q 008276          396 LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP---NERIW  471 (571)
Q Consensus       396 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~  471 (571)
                      +.|+...-..|..++...|++.+|...|++...- -+..|......+.++....+++..|...++++ ...|   ++...
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~  163 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH  163 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence            4566666666777777777777777777776652 34556666667777777777777777777766 1112   23334


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          472 GSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       472 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  529 (571)
                      ..+.+.+...|++.+|+..|+.++...| ++......+..+.++|+.++|..-+..+.
T Consensus       164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            4566677777777777777777777665 35555566666777777776665444443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.95  E-value=0.00016  Score=61.55  Aligned_cols=95  Identities=15%  Similarity=0.081  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 008276          437 EHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN----ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI  511 (571)
Q Consensus       437 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  511 (571)
                      ..+..+...+...|++++|...|++. ...|+    ...+..+...+...|++++|+..++++++..|.+...+..++.+
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~  115 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI  115 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            34555566666666666666666655 22221    34566666677777777777777777777777777777777777


Q ss_pred             HHhcCC--------------HHHHHHHHHHHHhC
Q 008276          512 YAKAGR--------------WGDVKRVRKFMNSK  531 (571)
Q Consensus       512 ~~~~g~--------------~~~A~~~~~~m~~~  531 (571)
                      +...|+              +++|.+++++....
T Consensus       116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~  149 (172)
T PRK02603        116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL  149 (172)
T ss_pred             HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence            777665              45566666655543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.95  E-value=0.019  Score=54.25  Aligned_cols=141  Identities=13%  Similarity=0.125  Sum_probs=86.7

Q ss_pred             HHHhhCCChHHHHHHHHHHHHhhcCCCC----hhHHHHHHHHhhcCCChHHHHHHHcccCCC-ChhhHHHHHHHH--HHc
Q 008276           36 DILDKYPDIKTLKKLHAQIIINQHLHSN----PSIGLKLMRTYGACGQMVDTRHVFDEITNK-NVVFFNVLIRSY--VNN  108 (571)
Q Consensus        36 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~--~~~  108 (571)
                      -.+.+.+++.++..+|.++-.+..-.|.    ...-+.++++|.. ++.+.....+....+. ....|-.+..++  -+.
T Consensus        14 f~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~   92 (549)
T PF07079_consen   14 FILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQ   92 (549)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence            3466779999999999999733322222    2233577888875 4556655555555442 133466665544  577


Q ss_pred             CChhHHHHHHHHHHhC--CCCCCc------------ccHHHHHHHhhcCCChHHHHHHHHHHHHhCCC----CchhHHHH
Q 008276          109 YLYYDALHVYKNMSVH--GFDPDC------------YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLD----YNLFNGNG  170 (571)
Q Consensus       109 ~~~~~A~~~~~~m~~~--g~~p~~------------~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~  170 (571)
                      +.+.+|++.+.....+  +..|.-            ..=+..+.++...|++.++..+++++...=++    .+..+|+.
T Consensus        93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~  172 (549)
T PF07079_consen   93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR  172 (549)
T ss_pred             hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence            8899999998887665  222211            11134555667778888888777777654333    56677776


Q ss_pred             HHHHHHh
Q 008276          171 LVAMYGK  177 (571)
Q Consensus       171 l~~~~~~  177 (571)
                      ++-.+++
T Consensus       173 ~vlmlsr  179 (549)
T PF07079_consen  173 AVLMLSR  179 (549)
T ss_pred             HHHHHhH
Confidence            5555543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PRK15331 chaperone protein SicA; Provisional

Probab=97.94  E-value=0.00014  Score=58.93  Aligned_cols=92  Identities=13%  Similarity=0.090  Sum_probs=78.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 008276          439 FACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG  516 (571)
Q Consensus       439 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  516 (571)
                      ......-+...|++++|..+|.-+ -..| +...|..|..++...+++++|+..|..+..++++|+..+...+.+|...|
T Consensus        40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~  119 (165)
T PRK15331         40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR  119 (165)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence            334555667899999999999877 3344 66678888888888999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHh
Q 008276          517 RWGDVKRVRKFMNS  530 (571)
Q Consensus       517 ~~~~A~~~~~~m~~  530 (571)
                      +.+.|+..|+...+
T Consensus       120 ~~~~A~~~f~~a~~  133 (165)
T PRK15331        120 KAAKARQCFELVNE  133 (165)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999988876

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.89  E-value=0.00054  Score=58.33  Aligned_cols=131  Identities=15%  Similarity=0.130  Sum_probs=82.4

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 008276          364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD--SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC  441 (571)
Q Consensus       364 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  441 (571)
                      ....+..+...+...|++++|...|++..+....+.  ...+..+...+.+.|++++|...+++..+.  .+.+...+..
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~  111 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN  111 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence            334566677777778888888888887776432222  246666777777788888888888777653  2234455566


Q ss_pred             HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 008276          442 LVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR  517 (571)
Q Consensus       442 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  517 (571)
                      +..++...|+...+..-++..                  ...+++|.+.++++...+|++   +..+..-+...|+
T Consensus       112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~  166 (172)
T PRK02603        112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence            666676666655554332221                  122677888888888888876   4444444444443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.88  E-value=0.00075  Score=67.63  Aligned_cols=139  Identities=19%  Similarity=0.064  Sum_probs=89.7

Q ss_pred             CChhHHHHHHHHHHh--c---CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcC--------CCHHHHHHHHHHHHH
Q 008276          363 QDVVSWTSMISAYGM--S---GQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHA--------GLLEEGRYYFKIMTE  428 (571)
Q Consensus       363 ~~~~~~~~li~~~~~--~---~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~--------~~~~~a~~~~~~~~~  428 (571)
                      .|...|...+++...  .   ++.+.|..+|++..+  ..|+.. .|..+..++...        .++..+.+..++...
T Consensus       335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            466677777766433  2   236688899999888  567653 444433332211        122333444443332


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 008276          429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG  503 (571)
Q Consensus       429 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  503 (571)
                      ......+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...++++..++|.++.
T Consensus       413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            2123344566776766666778888888888877 66677778888888888888888888888888888887764

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.88  E-value=0.0007  Score=62.52  Aligned_cols=135  Identities=13%  Similarity=0.164  Sum_probs=101.5

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008276          366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA-CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD  444 (571)
Q Consensus       366 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  444 (571)
                      .+|..++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.  ++.+...|...++
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~   78 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD   78 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence            467788888888888999999999998642 2344455544444 33357777899999999884  5567788888999


Q ss_pred             HHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 008276          445 LLGRAGKVEEAYDLIKQM-PMEPNE----RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG  503 (571)
Q Consensus       445 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  503 (571)
                      .+.+.|+.+.|..+|++. ..-|..    ..|...+..-.+.|+.+....+.+++.+..|.+..
T Consensus        79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~  142 (280)
T PF05843_consen   79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS  142 (280)
T ss_dssp             HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred             HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence            999999999999999987 323333    48999999999999999999999999998877443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.86  E-value=0.00023  Score=60.45  Aligned_cols=94  Identities=9%  Similarity=-0.116  Sum_probs=73.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 008276          435 RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN----ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS  509 (571)
Q Consensus       435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  509 (571)
                      ....+..++..+...|++++|+..|++. ...|+    ..+|..+...+...|++++|+..++++.++.|.....+..++
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la  113 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence            3456677777788888888888888877 33332    347788888889999999999999999999998888888888


Q ss_pred             HHHH-------hcCCHHHHHHHHHHH
Q 008276          510 NIYA-------KAGRWGDVKRVRKFM  528 (571)
Q Consensus       510 ~~~~-------~~g~~~~A~~~~~~m  528 (571)
                      .++.       ..|++++|+..+++.
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence            8888       778888666555543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.81  E-value=7.8e-05  Score=51.52  Aligned_cols=61  Identities=21%  Similarity=0.297  Sum_probs=50.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 008276          442 LVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS  502 (571)
Q Consensus       442 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  502 (571)
                      +...+...|++++|.+.|+++ ...| +...+..+..++...|++++|...|+++++..|+++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            567788899999999999988 5556 567888888889999999999999999999999874

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.81  E-value=4.4e-05  Score=53.37  Aligned_cols=54  Identities=15%  Similarity=0.271  Sum_probs=44.7

Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          479 CLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       479 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      ...|++++|+..|+++.+.+|++..++..++.+|.+.|++++|.++++++....
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~   55 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD   55 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            457888888888888888888888888888888888899999988888776554

...

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.77  E-value=9.8e-05  Score=54.12  Aligned_cols=79  Identities=20%  Similarity=0.225  Sum_probs=32.4

Q ss_pred             CChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008276          379 GQGYDAVALFSKMLMSGLC-PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD  457 (571)
Q Consensus       379 ~~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  457 (571)
                      |+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++.....   +.+......+..++.+.|++++|++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~---~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLD---PSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHH---HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            4455555555555542210 12223333445555555555555555441110   0112222233445555555555555


Q ss_pred             HHH
Q 008276          458 LIK  460 (571)
Q Consensus       458 ~~~  460 (571)
                      +++
T Consensus        80 ~l~   82 (84)
T PF12895_consen   80 ALE   82 (84)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            444

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.75  E-value=0.00043  Score=51.96  Aligned_cols=92  Identities=18%  Similarity=0.223  Sum_probs=44.7

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 008276          406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSN  483 (571)
Q Consensus       406 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~  483 (571)
                      +...+...|++++|...++.+.+.  .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (100)
T cd00189           6 LGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK   83 (100)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence            333444445555555555554432  1222234444555555555555555555544 2222 22345555555555666


Q ss_pred             HHHHHHHHHHHHhhCC
Q 008276          484 MDIGILAADHIFHLAP  499 (571)
Q Consensus       484 ~~~A~~~~~~~~~~~p  499 (571)
                      ++.|...++++.+..|
T Consensus        84 ~~~a~~~~~~~~~~~~   99 (100)
T cd00189          84 YEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHHHccCC
Confidence            6666666665555444

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.74  E-value=0.011  Score=58.15  Aligned_cols=86  Identities=10%  Similarity=0.067  Sum_probs=48.7

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH----------
Q 008276          401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNER----------  469 (571)
Q Consensus       401 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----------  469 (571)
                      .+...+...+-+...+..|.++|.+|-.          ...++......++|++|..+-++. ...|+..          
T Consensus       748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~  817 (1081)
T KOG1538|consen  748 EPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN  817 (1081)
T ss_pred             hHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence            3444444445555566666666666632          123556666667777777666666 3333321          


Q ss_pred             -HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          470 -IWGSLVAACCLYSNMDIGILAADHIFH  496 (571)
Q Consensus       470 -~~~~l~~~~~~~g~~~~A~~~~~~~~~  496 (571)
                       -|...-.+|.+.|+-.+|.++++++..
T Consensus       818 DrFeEAqkAfhkAGr~~EA~~vLeQLtn  845 (1081)
T KOG1538|consen  818 DRFEEAQKAFHKAGRQREAVQVLEQLTN  845 (1081)
T ss_pred             hhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence             112223456667788888888887654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.72  E-value=0.00015  Score=51.54  Aligned_cols=57  Identities=7%  Similarity=0.107  Sum_probs=50.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          476 AACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       476 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      ..|.+.+++++|++.++++++.+|+++..+...+.++.+.|++++|.+.+++..+.+
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            467788999999999999999999999999999999999999999999999888665

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.71  E-value=0.046  Score=51.60  Aligned_cols=428  Identities=9%  Similarity=0.038  Sum_probs=232.6

Q ss_pred             HHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCC---hhhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 008276           49 KLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKN---VVFFNVLIRSYVNNYLYYDALHVYKNMSVHG  125 (571)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g  125 (571)
                      ++-+++.   .-|-|..+|-.|++-|...|..++.+++++++..|-   ...|..-+++-....+++....+|.+.....
T Consensus        30 rLRerIk---dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~  106 (660)
T COG5107          30 RLRERIK---DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS  106 (660)
T ss_pred             HHHHHhh---cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence            5555553   335688999999999999999999999999999874   3478888888888889999999999988764


Q ss_pred             CCCCcccHHHHHHHhhcCCCh------HHHHHHHHHHHH-hCCCCc-hhHHHHHHHHH---------HhCCCHHHHHHHH
Q 008276          126 FDPDCYTYPCVLKACSGSNSL------LVGLQIHCSVVK-VGLDYN-LFNGNGLVAMY---------GKCGCLKEARRVL  188 (571)
Q Consensus       126 ~~p~~~~~~~li~~~~~~~~~------~~a~~~~~~~~~-~g~~~~-~~~~~~l~~~~---------~~~g~~~~A~~~~  188 (571)
                      +.  ...|..-+....+....      ...-+.++-.+. .++.|- ...|+..+..+         -.+.++|.....+
T Consensus       107 l~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y  184 (660)
T COG5107         107 LN--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY  184 (660)
T ss_pred             cc--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence            44  44454444433332211      111223333332 344443 33444444322         2234455566666


Q ss_pred             ccCCC-C---------CchhHHHHHHHHHh---CC----CchHHHHHHHHHHH--CCCC----CCHHHHHHHHHHhcCCC
Q 008276          189 NDMPS-K---------DVVTWNSMVAGYAQ---NG----RFDEALDVCREMES--LRIK----PDADTMASLLPSVTNTS  245 (571)
Q Consensus       189 ~~~~~-~---------~~~~~~~li~~~~~---~g----~~~~a~~~~~~m~~--~g~~----p~~~t~~~ll~~~~~~~  245 (571)
                      .++.. |         |-..|..=++-...   -|    -+-.|...+++...  .|..    .+.+|++.+-+ .+...
T Consensus       185 ~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r-~s~S~  263 (660)
T COG5107         185 MRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAAR-TSDSN  263 (660)
T ss_pred             HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccc-cccch
Confidence            66654 2         11222221111110   11    13445555655543  2322    12233322111 00000


Q ss_pred             -----------------CccHHHHHHHHhhCC---CCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 008276          246 -----------------PENVLSVKEMFLKLD---NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASV  305 (571)
Q Consensus       246 -----------------~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l  305 (571)
                                       +.-.....-+++++.   .-....|----..+...++-++|+.....-..  ..|.   .+..
T Consensus       264 WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~--~sps---L~~~  338 (660)
T COG5107         264 WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE--MSPS---LTMF  338 (660)
T ss_pred             hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc--CCCc---hhee
Confidence                             000000000111110   00111222222233444555555555433221  1222   2222


Q ss_pred             HH-HhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh---------cCCHHHHHHHHhhCCCCChhHHHHHHHHH
Q 008276          306 LP-ACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK---------CGSLTEARTVFDQMRCQDVVSWTSMISAY  375 (571)
Q Consensus       306 l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~li~~~  375 (571)
                      +. .+.-..+-+.+...|+...+.           |..-|.+         .|+++.-.+++-.-...=...|...+..-
T Consensus       339 lse~yel~nd~e~v~~~fdk~~q~-----------L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v  407 (660)
T COG5107         339 LSEYYELVNDEEAVYGCFDKCTQD-----------LKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYV  407 (660)
T ss_pred             HHHHHhhcccHHHHhhhHHHHHHH-----------HHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHH
Confidence            22 222223333333333222210           1111100         12222221211111112345678888888


Q ss_pred             HhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008276          376 GMSGQGYDAVALFSKMLMSG-LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE  454 (571)
Q Consensus       376 ~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  454 (571)
                      .+....+.|..+|-++.+.| +.++...+++++..++ .|+...|.++|+.-...  ++.+...-+..+.-+.+.++-+.
T Consensus       408 ~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~n  484 (660)
T COG5107         408 LRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEEN  484 (660)
T ss_pred             HHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHH
Confidence            88888999999999999988 5667778888888765 47889999999887663  33333444566777888999999


Q ss_pred             HHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 008276          455 AYDLIKQM--PMEPN--ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ  501 (571)
Q Consensus       455 A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  501 (571)
                      |..+|+..  .+..+  ...|..+|..-...|+...+..+-+++.+.-|..
T Consensus       485 araLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe  535 (660)
T COG5107         485 ARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE  535 (660)
T ss_pred             HHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence            99999965  22223  5688899998889999999999999999988753

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.67  E-value=0.06  Score=53.67  Aligned_cols=59  Identities=10%  Similarity=0.040  Sum_probs=31.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 008276          368 WTSMISAYGMSGQGYDAVALFSKMLM-SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM  426 (571)
Q Consensus       368 ~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~  426 (571)
                      |..|.+-....|..+.|+..--.+.+ ..+-|....|..+.-+-+....+-..-+.|-++
T Consensus      1024 FmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1024 FMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred             HHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence            44444555566777777665444333 125556666766655555544444444444444

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.65  E-value=0.00061  Score=65.40  Aligned_cols=121  Identities=9%  Similarity=-0.009  Sum_probs=97.1

Q ss_pred             hcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC-C-----ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcc
Q 008276           58 QHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN-K-----NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCY  131 (571)
Q Consensus        58 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~  131 (571)
                      .+.+.++.....+++.+....+++.+..++-+... |     -..|.+++++.|.+.|..+.++.++..=...|+-||.+
T Consensus        60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~  139 (429)
T PF10037_consen   60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF  139 (429)
T ss_pred             cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence            34556777778888888888888888888766654 1     23456789999999999999999999999999999999


Q ss_pred             cHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 008276          132 TYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKC  178 (571)
Q Consensus       132 ~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  178 (571)
                      +++.||+.+.+.|++..|.++..+|..++...+..|+..-+.+|.+.
T Consensus       140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            99999999999999999999999988887666667766666666555

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.63  E-value=7.3e-05  Score=42.55  Aligned_cols=29  Identities=31%  Similarity=0.528  Sum_probs=20.2

Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 008276           97 FFNVLIRSYVNNYLYYDALHVYKNMSVHG  125 (571)
Q Consensus        97 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g  125 (571)
                      +|+.++++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            56777777777777777777777776655

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.62  E-value=0.0042  Score=50.31  Aligned_cols=94  Identities=9%  Similarity=-0.035  Sum_probs=61.8

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 008276          403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCL  480 (571)
Q Consensus       403 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~  480 (571)
                      ...+..-+...|++++|.++|+.+..-  -+-+...|..|.-++-..|++++|+..|... .+.| ++..+-.+..++..
T Consensus        38 lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~  115 (157)
T PRK15363         38 LYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            333444556677777777777776642  2334455666777777777777777777766 3344 55666667777777


Q ss_pred             cCCHHHHHHHHHHHHhhC
Q 008276          481 YSNMDIGILAADHIFHLA  498 (571)
Q Consensus       481 ~g~~~~A~~~~~~~~~~~  498 (571)
                      .|+.+.|.+.|+.++..-
T Consensus       116 lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        116 CDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             cCCHHHHHHHHHHHHHHh
Confidence            777777777777777655

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.60  E-value=0.0013  Score=51.20  Aligned_cols=87  Identities=16%  Similarity=0.101  Sum_probs=53.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CchhHHHHHHHHH
Q 008276          442 LVDLLGRAGKVEEAYDLIKQM---PMEPN--ERIWGSLVAACCLYSNMDIGILAADHIFHLAPN---QSGYYVLLSNIYA  513 (571)
Q Consensus       442 l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~  513 (571)
                      +..++-..|+.++|+.+|++.   +....  ...+-.+..++...|++++|+.++++.....|+   +......++.++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            445555666666666666655   22221  234555666666777777777777777766665   5555566666777


Q ss_pred             hcCCHHHHHHHHHHH
Q 008276          514 KAGRWGDVKRVRKFM  528 (571)
Q Consensus       514 ~~g~~~~A~~~~~~m  528 (571)
                      ..|+.++|++.+-..
T Consensus        87 ~~gr~~eAl~~~l~~  101 (120)
T PF12688_consen   87 NLGRPKEALEWLLEA  101 (120)
T ss_pred             HCCCHHHHHHHHHHH
Confidence            777777777665443

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.60  E-value=0.00084  Score=50.18  Aligned_cols=81  Identities=21%  Similarity=0.089  Sum_probs=67.8

Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCCcccHHHHHHHhhcCC--------ChHHHHHHHHHHHHhCCCCchhH
Q 008276           97 FFNVLIRSYVNNYLYYDALHVYKNMSVHGF-DPDCYTYPCVLKACSGSN--------SLLVGLQIHCSVVKVGLDYNLFN  167 (571)
Q Consensus        97 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~  167 (571)
                      +....|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++..        ..-..+.++.+|+..+++|+..+
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et  106 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET  106 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence            445567777777999999999999999999 999999999999877543        23456788999999999999999


Q ss_pred             HHHHHHHHHh
Q 008276          168 GNGLVAMYGK  177 (571)
Q Consensus       168 ~~~l~~~~~~  177 (571)
                      |+.++..+.+
T Consensus       107 Ynivl~~Llk  116 (120)
T PF08579_consen  107 YNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHH
Confidence            9999887764

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.58  E-value=8.6e-05  Score=42.24  Aligned_cols=31  Identities=48%  Similarity=0.852  Sum_probs=25.7

Q ss_pred             hhHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 008276          197 VTWNSMVAGYAQNGRFDEALDVCREMESLRI  227 (571)
Q Consensus       197 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  227 (571)
                      .+|+.++++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            3688888888888888888888888887764

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.57  E-value=0.024  Score=52.70  Aligned_cols=162  Identities=15%  Similarity=0.252  Sum_probs=90.9

Q ss_pred             HHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhC-CCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcCCCCcc
Q 008276          171 LVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQN-GRFDEALDVCREMESLRIKP-DADTMASLLPSVTNTSPEN  248 (571)
Q Consensus       171 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~  248 (571)
                      .+..|...|++..|-+++           ..+...|-.. |++++|++.|++..+.-... ....               
T Consensus       100 A~~~y~~~G~~~~aA~~~-----------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~---------------  153 (282)
T PF14938_consen  100 AIEIYREAGRFSQAAKCL-----------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHS---------------  153 (282)
T ss_dssp             HHHHHHHCT-HHHHHHHH-----------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHH---------------
T ss_pred             HHHHHHhcCcHHHHHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhh---------------
Confidence            355677778877776654           4455666666 78888888887765410000 0000               


Q ss_pred             HHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHhccCCchHHHHHHH
Q 008276          249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE-----PNAI-SVASVLPACGDLSALLLGRKIH  322 (571)
Q Consensus       249 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-----~~~~-~~~~ll~~~~~~~~~~~a~~~~  322 (571)
                                    -...+..+...+.+.|++++|.++|++.......     .+.. .|...+-++...||...|...+
T Consensus       154 --------------a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~  219 (282)
T PF14938_consen  154 --------------AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKAL  219 (282)
T ss_dssp             --------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             --------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                          0234556677888888999999999888764322     1221 2223333556678888888888


Q ss_pred             HHHHHcC--CCCC--hhHHHHHHHHHHh--cCCHHHHHHHHhhCCCCChhHHHHHH
Q 008276          323 RYVERKK--LQPN--LRLENALVDMYAK--CGSLTEARTVFDQMRCQDVVSWTSMI  372 (571)
Q Consensus       323 ~~~~~~~--~~~~--~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~li  372 (571)
                      +......  +..+  ......|+.++-.  ...++.+..-|+.+.+-|..--..|+
T Consensus       220 ~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~  275 (282)
T PF14938_consen  220 ERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLL  275 (282)
T ss_dssp             HHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHH
T ss_pred             HHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHH
Confidence            8776542  2222  3445566666654  34577777777777776655444443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.56  E-value=9.5e-05  Score=51.64  Aligned_cols=54  Identities=17%  Similarity=0.228  Sum_probs=26.9

Q ss_pred             cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 008276          412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN  467 (571)
Q Consensus       412 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~  467 (571)
                      ..|++++|.++|+.+...  .+.+...+..++.+|.+.|++++|.++++++ ...|+
T Consensus         3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~   57 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD   57 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred             hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            345555555555555542  2224444445555555555555555555555 33444

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.53  E-value=0.0056  Score=61.48  Aligned_cols=134  Identities=15%  Similarity=0.078  Sum_probs=97.4

Q ss_pred             CCCCCHHHHHHHHHHhhc--C---CCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhc--------CCHHHHHHHHH
Q 008276          395 GLCPDSIAFVSVLSACSH--A---GLLEEGRYYFKIMTEQYKLVPRI-EHFACLVDLLGRA--------GKVEEAYDLIK  460 (571)
Q Consensus       395 g~~p~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------g~~~~A~~~~~  460 (571)
                      +.+.|...|...+++...  .   ++...|..+|+++.+.   .|+. ..+..+..++...        .+++.+.+...
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~  408 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD  408 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            356677888888887543  2   3377899999999864   5553 4555444444322        12344555555


Q ss_pred             hC---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          461 QM---P-MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       461 ~~---~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      +.   . ...++..|..+.-.....|++++|...++++++++| +...|..++.++...|+.++|.+.+++...-+
T Consensus       409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~  483 (517)
T PRK10153        409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR  483 (517)
T ss_pred             HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            43   1 233567787777777778999999999999999999 57899999999999999999999999876554

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.53  E-value=0.0016  Score=48.68  Aligned_cols=81  Identities=20%  Similarity=0.108  Sum_probs=67.5

Q ss_pred             hHHHHHHHHHHcCCchHHHHHHHHHHHCCC-CCCHHHHHHHHHHhccCC--------chHHHHHHHHHHHHcCCCCChhH
Q 008276          266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGI-EPNAISVASVLPACGDLS--------ALLLGRKIHRYVERKKLQPNLRL  336 (571)
Q Consensus       266 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~  336 (571)
                      +....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..++.        +.-....+|+.|...+++|+..+
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et  106 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET  106 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence            344567777778999999999999999999 999999999999876543        24456778899999999999999


Q ss_pred             HHHHHHHHHh
Q 008276          337 ENALVDMYAK  346 (571)
Q Consensus       337 ~~~l~~~~~~  346 (571)
                      |+.++..+.+
T Consensus       107 Ynivl~~Llk  116 (120)
T PF08579_consen  107 YNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHH
Confidence            9998887764

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.51  E-value=0.00023  Score=49.84  Aligned_cols=65  Identities=20%  Similarity=0.290  Sum_probs=50.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 008276          435 RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYS-NMDIGILAADHIFHLAP  499 (571)
Q Consensus       435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p  499 (571)
                      +...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3556777888888888888888888877 4455 5667777888888888 68888888888888877

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.50  E-value=0.068  Score=48.13  Aligned_cols=68  Identities=7%  Similarity=-0.160  Sum_probs=45.7

Q ss_pred             ChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHhccCCchHHHHHHHHHHHHcCC
Q 008276          263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA--ISVASVLPACGDLSALLLGRKIHRYVERKKL  330 (571)
Q Consensus       263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  330 (571)
                      +...+-.....+...|++++|.+.|+++...-..+..  ...-.+..++.+.++++.|...++...+...
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P  100 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP  100 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence            3444445566677788999999999998875322211  1123455677888888888888888887643

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.50  E-value=0.0022  Score=54.33  Aligned_cols=62  Identities=11%  Similarity=0.052  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276          367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD--SIAFVSVLSACSHAGLLEEGRYYFKIMTE  428 (571)
Q Consensus       367 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  428 (571)
                      .|..+...+...|++++|+..|++.......|.  ..++..+...+...|++++|...++....
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  100 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE  100 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344455555555556666665555554321111  12445555555555555555555555543

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.50  E-value=0.0016  Score=55.21  Aligned_cols=112  Identities=20%  Similarity=0.251  Sum_probs=80.5

Q ss_pred             HHHccC--CCCCchhHHHHHHHHHh-----CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhh
Q 008276          186 RVLNDM--PSKDVVTWNSMVAGYAQ-----NGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLK  258 (571)
Q Consensus       186 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~  258 (571)
                      ..|+..  ..++..+|..++..|.+     .|..+=....+..|.+.|+.-|..+|+.||..+=+..-..-..       
T Consensus        35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~-------  107 (228)
T PF06239_consen   35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNF-------  107 (228)
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccH-------
Confidence            344444  34677777777777765     4677778888899999999999999999998876543311111       


Q ss_pred             CCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCc
Q 008276          259 LDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA  314 (571)
Q Consensus       259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~  314 (571)
                              +.++-..|  -.+-+-|++++++|...|+.||..++..+++.+.+.+.
T Consensus       108 --------fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  108 --------FQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             --------HHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence                    11111111  13567899999999999999999999999999988765

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.49  E-value=0.0014  Score=60.59  Aligned_cols=129  Identities=9%  Similarity=0.114  Sum_probs=100.0

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 008276          401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR-AGKVEEAYDLIKQM--PMEPNERIWGSLVAA  477 (571)
Q Consensus       401 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~  477 (571)
                      .+|..+++..-+.+..+.|..+|.++.+.  -..+..+|...+..-.. .++.+.|.++|+..  .+..+...|...+.-
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            36778888888888899999999999854  22344555555555344 56667799999987  445578889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276          478 CCLYSNMDIGILAADHIFHLAPNQS---GYYVLLSNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       478 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                      +...++.+.|..+|++++..-|...   ..|...+..-.+.|+.+.+..+.+++.+.
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999999999998766544   58999999999999999999999888754

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.48  E-value=0.0014  Score=60.61  Aligned_cols=258  Identities=13%  Similarity=0.017  Sum_probs=152.9

Q ss_pred             HHHHHcCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHhccCCchHHHHHHHHHHH--H--cCCCC-ChhHHHHHHH
Q 008276          272 AVYANNSMPAEAVDLYLQMEVHGIEPNA----ISVASVLPACGDLSALLLGRKIHRYVE--R--KKLQP-NLRLENALVD  342 (571)
Q Consensus       272 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~--~--~~~~~-~~~~~~~l~~  342 (571)
                      .-+|+.|+......+|+..++.| .-|.    ..|..+.++|.-.+++++|.++...=+  .  .|-+. .......|..
T Consensus        25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN  103 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN  103 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence            45788999999999999998877 3343    456666777888888998888754311  1  11110 1111112333


Q ss_pred             HHHhcCCHHHHHHHHhhCCC---------CChhHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH-
Q 008276          343 MYAKCGSLTEARTVFDQMRC---------QDVVSWTSMISAYGMSGQ--------------------GYDAVALFSKML-  392 (571)
Q Consensus       343 ~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~-  392 (571)
                      .+--.|.+++|...-.+-..         .....+-.+...|...|+                    ++.|.++|.+=+ 
T Consensus       104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~  183 (639)
T KOG1130|consen  104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE  183 (639)
T ss_pred             hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            33344555555443222110         112233344444443331                    234455554322 


Q ss_pred             ---HCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHH---HhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC--
Q 008276          393 ---MSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMT---EQYKLVP-RIEHFACLVDLLGRAGKVEEAYDLIKQM--  462 (571)
Q Consensus       393 ---~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--  462 (571)
                         +.|-.. --..|..|...|.-.|+++.|+...+.-.   +.+|-.. ....+..+..++.-.|+++.|.+.++..  
T Consensus       184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~  263 (639)
T KOG1130|consen  184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN  263 (639)
T ss_pred             HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence               212111 11245556666666789999887765422   2223322 2356788888999999999999988754  


Q ss_pred             -----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----C--CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          463 -----PME-PNERIWGSLVAACCLYSNMDIGILAADHIFHL----A--PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       463 -----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                           +.+ ......-+|..+|.-..++++|+....+=+.+    +  -....++.+|+.++...|..+.|+.+.+.-++
T Consensus       264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence                 211 23344456788888888899999888765442    2  23455788999999999999999987766553

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.48  E-value=0.016  Score=52.21  Aligned_cols=171  Identities=13%  Similarity=0.076  Sum_probs=97.4

Q ss_pred             HHHHHHhcCCHHHHHHHHhhCCC--CChh-H---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhh
Q 008276          340 LVDMYAKCGSLTEARTVFDQMRC--QDVV-S---WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS--IAFVSVLSACS  411 (571)
Q Consensus       340 l~~~~~~~~~~~~a~~~~~~~~~--~~~~-~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~  411 (571)
                      ....+...|++++|.+.|+.+..  |+.. .   .-.++.++.+.+++++|...+++..+.  .|+.  .-|...+.+.+
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~  115 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT  115 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence            34445566777777777777764  3222 1   234556667777777777777777763  3322  12333333322


Q ss_pred             c--C---------------CC---HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH
Q 008276          412 H--A---------------GL---LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIW  471 (571)
Q Consensus       412 ~--~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~  471 (571)
                      .  .               .+   ...|...|+.+.+.+   |+.             .-..+|...+..+....-.. -
T Consensus       116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~l~~~la~~-e  178 (243)
T PRK10866        116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVFLKDRLAKY-E  178 (243)
T ss_pred             hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHHHHHHHHHH-H
Confidence            1  1               01   123444444444431   221             11222322222220000000 1


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          472 GSLVAACCLYSNMDIGILAADHIFHLAPNQS---GYYVLLSNIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       472 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~  529 (571)
                      ..+..-|.+.|++.-|..-++.+++.-|+.+   .+...++.+|.+.|..++|..+...+.
T Consensus       179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            1345568889999999999999999887654   467788899999999999999887664

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.42  E-value=0.18  Score=51.03  Aligned_cols=110  Identities=14%  Similarity=0.086  Sum_probs=81.7

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008276          401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL  480 (571)
Q Consensus       401 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~  480 (571)
                      .+.+-.+.-+...|+..+|.++-.+.+     .||...|-.-+.+++..+++++-+++-+...   .+.-|.-+..+|.+
T Consensus       685 lSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~  756 (829)
T KOG2280|consen  685 LSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLK  756 (829)
T ss_pred             CcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHh
Confidence            345555666677788888888766653     4788888888889999999998888877762   25567778889999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 008276          481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRK  526 (571)
Q Consensus       481 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  526 (571)
                      .|+.++|.+.+-+...+.        -...+|.+.|++.+|.+..-
T Consensus       757 ~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A~  794 (829)
T KOG2280|consen  757 QGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLAA  794 (829)
T ss_pred             cccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHHH
Confidence            999999988776553221        56678888888888887643

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.42  E-value=0.021  Score=47.09  Aligned_cols=134  Identities=10%  Similarity=0.036  Sum_probs=88.2

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 008276          363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACL  442 (571)
Q Consensus       363 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  442 (571)
                      |.+...-.|..++...|++.+|...|++...--..-|......+.++....+++..|...++.+.+.+.-.-++.....+
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~  166 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF  166 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence            45555566777778888888888888887664444566677777778778888888888888877653222233444567


Q ss_pred             HHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          443 VDLLGRAGKVEEAYDLIKQM-PMEPNERIWGSLVAACCLYSNMDIGILAADHIFH  496 (571)
Q Consensus       443 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  496 (571)
                      .+.|...|+.++|+..|+.. ..-|+...-.-....+.+.|+.+++..-+..+.+
T Consensus       167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            77788888888888888776 4455555444444555666766665554444433

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.40  E-value=0.00016  Score=41.93  Aligned_cols=32  Identities=25%  Similarity=0.472  Sum_probs=30.5

Q ss_pred             HHHHHhhCCCCchhHHHHHHHHHhcCCHHHHH
Q 008276          491 ADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK  522 (571)
Q Consensus       491 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~  522 (571)
                      |+++++++|+++.+|..++.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            68899999999999999999999999999996

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.40  E-value=0.002  Score=59.54  Aligned_cols=129  Identities=12%  Similarity=0.028  Sum_probs=87.6

Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHHHHH----cCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CC--Ch
Q 008276          300 ISVASVLPACGDLSALLLGRKIHRYVER----KKLQ-PNLRLENALVDMYAKCGSLTEARTVFDQMR-------CQ--DV  365 (571)
Q Consensus       300 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~--~~  365 (571)
                      ..|..+.+.|.-.|+++.|+...+.-+.    .|-. .....+..+..++.-.|+++.|.+.|+...       ..  ..
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            4566666777778899999887765442    2321 123456677788888899999988887543       12  23


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276          366 VSWTSMISAYGMSGQGYDAVALFSKMLM----SG-LCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE  428 (571)
Q Consensus       366 ~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  428 (571)
                      .+.-+|...|.-..++++|+.++.+-+.    .+ ..-....+.+|..++...|..++|+.+.+...+
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            3456677788878888999888765332    11 122345778889999999999999887776554

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.39  E-value=0.0038  Score=60.07  Aligned_cols=117  Identities=11%  Similarity=0.068  Sum_probs=65.8

Q ss_pred             CCCHHHHHHHHHHhccCCchHHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHH
Q 008276          296 EPNAISVASVLPACGDLSALLLGRKIHRYVERK--KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC----QDVVSWT  369 (571)
Q Consensus       296 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~  369 (571)
                      +.+......+++.+....+.+.+..++......  ....-..+..++++.|.+.|..+.+..+++.=..    ||..++|
T Consensus        63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n  142 (429)
T PF10037_consen   63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN  142 (429)
T ss_pred             CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence            445555555566666666666666655555543  1222233444666666666666666666655443    5666666


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 008276          370 SMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH  412 (571)
Q Consensus       370 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~  412 (571)
                      .|++.+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus       143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~  185 (429)
T PF10037_consen  143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK  185 (429)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence            6666666666666666666666655555555555544444443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.38  E-value=0.065  Score=50.68  Aligned_cols=160  Identities=17%  Similarity=0.133  Sum_probs=89.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHhhCCCC-------ChhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008276          339 ALVDMYAKCGSLTEARTVFDQMRCQ-------DVVSWTSMISAYGM---SGQGYDAVALFSKMLMSGLCPDSIAFVSVLS  408 (571)
Q Consensus       339 ~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~  408 (571)
                      .++-.|....+++...++.+.+...       ....-...+-++.+   .|+.++|+.++..+....-.+++.+|..+.+
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            3444455666666666666665542       11112233344555   6777777777777555555666667766665


Q ss_pred             Hhhc---------CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HH---HHHHHH---HhC-------CCC
Q 008276          409 ACSH---------AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK-VE---EAYDLI---KQM-------PME  465 (571)
Q Consensus       409 ~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~~-------~~~  465 (571)
                      .|-.         ....++|...|.+.-+   +.|+...--.++..+...|. ++   +..++-   ..+       .-.
T Consensus       226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~  302 (374)
T PF13281_consen  226 IYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM  302 (374)
T ss_pred             HHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence            5421         1235666766665543   34554333333333333442 11   222222   111       112


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 008276          466 PNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ  501 (571)
Q Consensus       466 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  501 (571)
                      .+.-.+.+++.++.-.|++++|.+.++++.++.|+.
T Consensus       303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~  338 (374)
T PF13281_consen  303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA  338 (374)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence            344455778888899999999999999999988764

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.37  E-value=0.0019  Score=58.55  Aligned_cols=101  Identities=9%  Similarity=0.021  Sum_probs=54.8

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC----CHHHHHHHH
Q 008276          402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR-IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP----NERIWGSLV  475 (571)
Q Consensus       402 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~  475 (571)
                      .|...+....+.|++++|...|+.+.+.+.-.+- ...+..+..+|...|++++|...|+.+ ...|    ....+..+.
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg  224 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG  224 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence            3444443334556677777777766654322110 234455666666666666666666665 1112    233444444


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 008276          476 AACCLYSNMDIGILAADHIFHLAPNQS  502 (571)
Q Consensus       476 ~~~~~~g~~~~A~~~~~~~~~~~p~~~  502 (571)
                      ..+...|+.++|...|+++++..|++.
T Consensus       225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        225 VIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            555566666666666666666666544

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.33  E-value=0.0054  Score=56.96  Aligned_cols=94  Identities=10%  Similarity=0.100  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHhc-CCHHHHHHHHHhC------CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------
Q 008276          438 HFACLVDLLGRA-GKVEEAYDLIKQM------PMEP--NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ-------  501 (571)
Q Consensus       438 ~~~~l~~~~~~~-g~~~~A~~~~~~~------~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------  501 (571)
                      .+..+...|... |++++|++.|++.      .-.+  -..++..+...+.+.|++++|...|+++......+       
T Consensus       116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~  195 (282)
T PF14938_consen  116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA  195 (282)
T ss_dssp             HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence            344445555555 5666666666554      1111  12344455556666777777777777665532111       


Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276          502 SGYYVLLSNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       502 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                      ...+...+-++...|+...|.+.+++....
T Consensus       196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~  225 (282)
T PF14938_consen  196 KEYFLKAILCHLAMGDYVAARKALERYCSQ  225 (282)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            112334444556667777777777766543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.27  E-value=0.00062  Score=42.39  Aligned_cols=42  Identities=17%  Similarity=0.189  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 008276          469 RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSN  510 (571)
Q Consensus       469 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  510 (571)
                      .+|..+..+|...|++++|++.|+++++..|+++.++..++.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            357788999999999999999999999999999999988864

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.27  E-value=0.0016  Score=62.08  Aligned_cols=97  Identities=12%  Similarity=0.026  Sum_probs=55.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 008276          435 RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNE----RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS  509 (571)
Q Consensus       435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  509 (571)
                      +...++.+..+|...|++++|+..|++. .+.|+.    .+|..+..+|...|+.++|+..+++++++.+.   .|..+.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~  150 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL  150 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence            3456666777777777777777777664 555643    24666677777777777777777777765321   121111


Q ss_pred             H--HHHhcCCHHHHHHHHHHHHhCCCC
Q 008276          510 N--IYAKAGRWGDVKRVRKFMNSKGIK  534 (571)
Q Consensus       510 ~--~~~~~g~~~~A~~~~~~m~~~~~~  534 (571)
                      .  .+....+.++..++++.+...|..
T Consensus       151 ~DpdL~plR~~pef~eLlee~rk~G~~  177 (453)
T PLN03098        151 NDPDLAPFRASPEFKELQEEARKGGED  177 (453)
T ss_pred             hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence            1  112223344556666666666544

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.25  E-value=0.0013  Score=46.55  Aligned_cols=65  Identities=12%  Similarity=0.299  Sum_probs=51.1

Q ss_pred             HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 008276          444 DLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL  508 (571)
Q Consensus       444 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  508 (571)
                      ..|.+.+++++|.++++.+ ...| +...|......+...|++++|...++++++..|+++......
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~   69 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR   69 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            5677888888888888887 5555 566777778888889999999999999999988776655443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.24  E-value=0.009  Score=54.21  Aligned_cols=93  Identities=12%  Similarity=0.066  Sum_probs=53.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHHHH
Q 008276          439 FACLVDLLGRAGKVEEAYDLIKQM-PMEPN----ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ---SGYYVLLSN  510 (571)
Q Consensus       439 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~  510 (571)
                      |..-+..+.+.|++++|...|+.+ ...|+    +..+-.+...|...|++++|...|+++.+..|++   +.++..++.
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~  225 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV  225 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence            333333334456666666666665 22232    2344455666666666666666666666655543   334445566


Q ss_pred             HHHhcCCHHHHHHHHHHHHhC
Q 008276          511 IYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       511 ~~~~~g~~~~A~~~~~~m~~~  531 (571)
                      ++...|++++|..++++..+.
T Consensus       226 ~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        226 IMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            666666666666666666544

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.24  E-value=0.18  Score=47.26  Aligned_cols=76  Identities=16%  Similarity=0.199  Sum_probs=33.5

Q ss_pred             HHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHH
Q 008276          344 YAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF  423 (571)
Q Consensus       344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~  423 (571)
                      +...|+...|.++-.+..-|+-..|...+.+++..++|++-..+...      +-++.-|..++.+|.+.|+..+|..+.
T Consensus       187 li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI  260 (319)
T PF04840_consen  187 LIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYI  260 (319)
T ss_pred             HHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHH
Confidence            34444444444444444444444455555555555554444433211      112233444444444444444444444


Q ss_pred             HH
Q 008276          424 KI  425 (571)
Q Consensus       424 ~~  425 (571)
                      .+
T Consensus       261 ~k  262 (319)
T PF04840_consen  261 PK  262 (319)
T ss_pred             Hh
Confidence            33

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.18  E-value=0.013  Score=45.64  Aligned_cols=107  Identities=13%  Similarity=0.046  Sum_probs=66.2

Q ss_pred             HHHHHHHHcCCchHHHHHHHHHHHCCCCCC--HHHHHHHHHHhccCCchHHHHHHHHHHHHcCCC--CChhHHHHHHHHH
Q 008276          269 VMIAVYANNSMPAEAVDLYLQMEVHGIEPN--AISVASVLPACGDLSALLLGRKIHRYVERKKLQ--PNLRLENALVDMY  344 (571)
Q Consensus       269 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~  344 (571)
                      .+..++-..|+.++|+.+|++....|....  ...+..+..++...|++++|..+++........  .+......+..++
T Consensus         6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L   85 (120)
T PF12688_consen    6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL   85 (120)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence            345567778889999999998888876554  245556667778888888888888877764311  1122222233455


Q ss_pred             HhcCCHHHHHHHHhhCCCCChhHHHHHHHHH
Q 008276          345 AKCGSLTEARTVFDQMRCQDVVSWTSMISAY  375 (571)
Q Consensus       345 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~  375 (571)
                      ...|+.++|...+-....++...|..-|..|
T Consensus        86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y  116 (120)
T PF12688_consen   86 YNLGRPKEALEWLLEALAETLPRYRRAIRFY  116 (120)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6667777777766544433333344333333

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.16  E-value=0.0036  Score=53.22  Aligned_cols=36  Identities=8%  Similarity=0.099  Sum_probs=23.7

Q ss_pred             ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 008276          145 SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC  180 (571)
Q Consensus       145 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~  180 (571)
                      +.+-|++++++|...|+-||..++..|++.+++.+.
T Consensus       118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            345566777777777777777777777776655443

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.13  E-value=0.24  Score=46.52  Aligned_cols=105  Identities=10%  Similarity=0.074  Sum_probs=67.3

Q ss_pred             HHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChH
Q 008276          303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGY  382 (571)
Q Consensus       303 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~  382 (571)
                      +..+.-|...|+...|.++-.+..    .|+...|...+.+++..++|++-..+...  +.++..|..++.+|.+.|+..
T Consensus       181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~  254 (319)
T PF04840_consen  181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKK  254 (319)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHH
Confidence            333444555666666666544432    46777777777788888888777766543  455677778888888888877


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHH
Q 008276          383 DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF  423 (571)
Q Consensus       383 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~  423 (571)
                      +|..+..+     +++     ..-+..|.+.|++.+|.+.-
T Consensus       255 eA~~yI~k-----~~~-----~~rv~~y~~~~~~~~A~~~A  285 (319)
T PF04840_consen  255 EASKYIPK-----IPD-----EERVEMYLKCGDYKEAAQEA  285 (319)
T ss_pred             HHHHHHHh-----CCh-----HHHHHHHHHCCCHHHHHHHH
Confidence            77777665     221     33445566777777766553

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.12  E-value=0.048  Score=53.83  Aligned_cols=114  Identities=12%  Similarity=0.106  Sum_probs=65.3

Q ss_pred             HHHHHHcCCchHHHHHHH------HHHHCCCC---CCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 008276          271 IAVYANNSMPAEAVDLYL------QMEVHGIE---PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV  341 (571)
Q Consensus       271 ~~~~~~~g~~~~A~~~~~------~m~~~g~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  341 (571)
                      ...+...|+.++|..+.-      -+.+-+-+   .+..+...+..-+.+...+..|.++|..|-+.         ..++
T Consensus       710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiV  780 (1081)
T KOG1538|consen  710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLV  780 (1081)
T ss_pred             HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHh
Confidence            344555666666655431      11111112   22334444444455556667777777766543         2466


Q ss_pred             HHHHhcCCHHHHHHHHhhCCC--CChhH-----------HHHHHHHHHhcCChHHHHHHHHHHHH
Q 008276          342 DMYAKCGSLTEARTVFDQMRC--QDVVS-----------WTSMISAYGMSGQGYDAVALFSKMLM  393 (571)
Q Consensus       342 ~~~~~~~~~~~a~~~~~~~~~--~~~~~-----------~~~li~~~~~~~~~~~a~~~~~~m~~  393 (571)
                      +.....+++.+|..+-+..++  +|+..           |.-.-.+|.+.|+..+|..+++++..
T Consensus       781 qlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn  845 (1081)
T KOG1538|consen  781 QLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN  845 (1081)
T ss_pred             hheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence            777888888888888888776  33321           22233456677777777777777654

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.11  E-value=0.032  Score=48.75  Aligned_cols=134  Identities=11%  Similarity=0.069  Sum_probs=81.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcC----CCCCHHHHHHHH
Q 008276          368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK----LVPRIEHFACLV  443 (571)
Q Consensus       368 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~  443 (571)
                      -+.++..+.-.|.+.-....+.+.++...+-++.....+.+.-...|+.+.|...|+...+..+    ..-...+.....
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence            3455556666677777777777777765455666667777777777888888888876654322    111222222233


Q ss_pred             HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 008276          444 DLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ  501 (571)
Q Consensus       444 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  501 (571)
                      ..|.-++++.+|...+.++ ..+| ++...|.-.-...-.|+..+|++.++.+.+..|..
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            3445556777777777776 2223 44444444444455677777777777777777643

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.10  E-value=0.028  Score=50.48  Aligned_cols=105  Identities=16%  Similarity=0.105  Sum_probs=82.5

Q ss_pred             CCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhC-CCCC-CHHHH
Q 008276          397 CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG---KVEEAYDLIKQM-PMEP-NERIW  471 (571)
Q Consensus       397 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~~  471 (571)
                      +-|...|..|...|...|+++.|...|....+.  ..+++..+..+.+++....   ...++..+|+++ ..+| |..+.
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral  230 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL  230 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence            336779999999999999999999999998873  3456666777777765443   467888899988 5666 56666


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 008276          472 GSLVAACCLYSNMDIGILAADHIFHLAPNQSG  503 (571)
Q Consensus       472 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  503 (571)
                      ..|...+...|++.+|...|+.+++..|++..
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            66777888999999999999999998876553

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.09  E-value=0.0023  Score=52.78  Aligned_cols=69  Identities=22%  Similarity=0.247  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCCc
Q 008276          470 IWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN-----SKGIKKMPG  538 (571)
Q Consensus       470 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~  538 (571)
                      +...++..+...|++++|+..+++++..+|-+...|..++.+|...|+..+|.++|+++.     +-|+.|.|.
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~  137 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE  137 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence            455667778889999999999999999999999999999999999999999999998885     457776654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.08  E-value=0.37  Score=47.74  Aligned_cols=181  Identities=13%  Similarity=0.137  Sum_probs=118.2

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008276          333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQD---VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA  409 (571)
Q Consensus       333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~  409 (571)
                      +..+|...+..-.+.|+.+.+.-+|+.+.-|-   ...|-..+.-....|+.+-|..++....+--.+-.+.+-..-..-
T Consensus       296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f  375 (577)
T KOG1258|consen  296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF  375 (577)
T ss_pred             HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence            45677777777888899999999998887542   234555555555668888888877766654222222221111222


Q ss_pred             hhcCCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHH----HHH-HH
Q 008276          410 CSHAGLLEEGRYYFKIMTEQYKLVPRI-EHFACLVDLLGRAGKVEEAY---DLIKQM-PMEPNERIWGSL----VAA-CC  479 (571)
Q Consensus       410 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l----~~~-~~  479 (571)
                      +-..|+++.|..+++.+.+.  . |+. ..-..-+....+.|..+.+.   +++... ..+.+......+    .+- +.
T Consensus       376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~  452 (577)
T KOG1258|consen  376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK  452 (577)
T ss_pred             HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence            34567999999999999875  3 544 33333455567788888887   444444 222232222222    222 33


Q ss_pred             hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 008276          480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG  516 (571)
Q Consensus       480 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  516 (571)
                      -.++.+.|..++.++.+..|++...|..++......+
T Consensus       453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence            4789999999999999999999999998888776655

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.05  E-value=0.43  Score=47.98  Aligned_cols=129  Identities=9%  Similarity=0.030  Sum_probs=65.1

Q ss_pred             hHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCCc--------ccHHHHHHHhhcCCChHHHH
Q 008276           80 MVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVH-GFDPDC--------YTYPCVLKACSGSNSLLVGL  150 (571)
Q Consensus        80 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~--------~~~~~li~~~~~~~~~~~a~  150 (571)
                      +++|.+..+.-  |.++.|..+.......-.++.|...|-+.... |++.-.        ..-..=+  -+--|++++|+
T Consensus       679 ledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei--~~~~g~feeae  754 (1189)
T KOG2041|consen  679 LEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEI--SAFYGEFEEAE  754 (1189)
T ss_pred             hHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhH--hhhhcchhHhh
Confidence            45555544432  45567777777666666666666655444321 111000        0000001  11235666666


Q ss_pred             HHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCC-----CchhHHHHHHHHHhCCCchHHHHHHHH
Q 008276          151 QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK-----DVVTWNSMVAGYAQNGRFDEALDVCRE  221 (571)
Q Consensus       151 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~  221 (571)
                      +++-+|-+..         ..+..+.+.|++-...++++.-...     -..+|+.+...++....|++|.+.|..
T Consensus       755 k~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~  821 (1189)
T KOG2041|consen  755 KLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY  821 (1189)
T ss_pred             hhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6665554432         2345555666666666666543321     123566666666666666666666654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.03  E-value=0.13  Score=45.05  Aligned_cols=50  Identities=12%  Similarity=0.118  Sum_probs=39.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCch---hHHHHHHHHHhcCCHHHHHH
Q 008276          474 LVAACCLYSNMDIGILAADHIFHLAPNQSG---YYVLLSNIYAKAGRWGDVKR  523 (571)
Q Consensus       474 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~  523 (571)
                      +...|.+.|.+..|..-++.+++..|+.+.   +...++.+|.+.|..+.|..
T Consensus       147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~  199 (203)
T PF13525_consen  147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT  199 (203)
T ss_dssp             HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence            455688999999999999999999987755   56788889999999885543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.01  E-value=0.0016  Score=46.79  Aligned_cols=62  Identities=8%  Similarity=0.099  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          469 RIWGSLVAACCLYSNMDIGILAADHIFHLA----PN---QSGYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       469 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      .+++.+...|...|++++|+..+++++++.    ++   ...++..++.++...|++++|++++++..+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            466777788888888888888888877632    22   245778888999999999999998887653

...

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.02  Score=53.50  Aligned_cols=95  Identities=15%  Similarity=0.127  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 008276          437 EHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK  514 (571)
Q Consensus       437 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  514 (571)
                      ..+..+.-++.+.+++.+|+....+. ..+| |.-..--=..+|...|+++.|...|++++++.|.|..+...++.+-.+
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k  337 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK  337 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            45677888899999999999998877 4444 666766677889999999999999999999999999999999998888


Q ss_pred             cCCHHHH-HHHHHHHHhC
Q 008276          515 AGRWGDV-KRVRKFMNSK  531 (571)
Q Consensus       515 ~g~~~~A-~~~~~~m~~~  531 (571)
                      ..++.+. .++|..|..+
T Consensus       338 ~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  338 IREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            7776665 7889999754

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.89  E-value=0.036  Score=44.15  Aligned_cols=89  Identities=18%  Similarity=0.180  Sum_probs=56.8

Q ss_pred             HHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch---hHHHHHHHHHh
Q 008276          443 VDLLGRAGKVEEAYDLIKQM----PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG---YYVLLSNIYAK  514 (571)
Q Consensus       443 ~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~  514 (571)
                      .....+.|++++|.+.|+.+    +..| ....-..++.++.+.+++++|...+++.+++.|.++.   ++...+-++..
T Consensus        17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~   96 (142)
T PF13512_consen   17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE   96 (142)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence            44445667777777777766    2223 3445566777888888888888888888888876655   33344444444


Q ss_pred             cCC---------------HHHHHHHHHHHHhC
Q 008276          515 AGR---------------WGDVKRVRKFMNSK  531 (571)
Q Consensus       515 ~g~---------------~~~A~~~~~~m~~~  531 (571)
                      ...               ..+|..-|+++++.
T Consensus        97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~  128 (142)
T PF13512_consen   97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR  128 (142)
T ss_pred             HhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence            443               55666666666644

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.89  E-value=0.21  Score=43.76  Aligned_cols=182  Identities=10%  Similarity=-0.014  Sum_probs=94.2

Q ss_pred             hhHHHHHHHHHHcCCchHHHHHHHHHHHCCCC--CCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 008276          265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE--PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD  342 (571)
Q Consensus       265 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  342 (571)
                      ...-.....+...|++++|...|+.+......  --......++.++.+.|+++.|...++...+.-......-+...+.
T Consensus         6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~   85 (203)
T PF13525_consen    6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML   85 (203)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence            33445566778889999999999999875311  1234555677788888999999999998887643222222222222


Q ss_pred             HHHhcCCHHHHHHHHhhCCCCC-------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCC
Q 008276          343 MYAKCGSLTEARTVFDQMRCQD-------VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL  415 (571)
Q Consensus       343 ~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~  415 (571)
                      +.+........   +  ....|       ...+..++.-|=......+|...+..+.+.  - -. .-..+.+-|.+.|.
T Consensus        86 g~~~~~~~~~~---~--~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~--l-a~-~e~~ia~~Y~~~~~  156 (203)
T PF13525_consen   86 GLSYYKQIPGI---L--RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR--L-AE-HELYIARFYYKRGK  156 (203)
T ss_dssp             HHHHHHHHHHH---H---TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH--H-HH-HHHHHHHHHHCTT-
T ss_pred             HHHHHHhCccc---h--hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH--H-HH-HHHHHHHHHHHccc
Confidence            22211111111   0  00111       112444444444455555555544444331  0 01 11224556777788


Q ss_pred             HHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 008276          416 LEEGRYYFKIMTEQYKLVPRI-EHFACLVDLLGRAGKVEEA  455 (571)
Q Consensus       416 ~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A  455 (571)
                      +..|..-++.+.+++.-.+.. .....++.+|.+.|..+.|
T Consensus       157 y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  157 YKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            888888787777754332222 3455666777777766644

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.83  E-value=0.068  Score=41.40  Aligned_cols=140  Identities=12%  Similarity=0.097  Sum_probs=81.6

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008276          376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA  455 (571)
Q Consensus       376 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  455 (571)
                      .-.|..++..++..+...+   .+..-++-++--....-+-+-..+.++.+-+.+.+.              .+|++...
T Consensus        13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV   75 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV   75 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred             HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence            3456777777777776653   133344545544444445555555555554322221              12333333


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008276          456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK  534 (571)
Q Consensus       456 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  534 (571)
                      ..-+-.+  ..+....+..+..+...|+-+.-.+++..+.+.+..++.+..-++.+|.+.|+..++.+++++..++|++
T Consensus        76 i~C~~~~--n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   76 IECYAKR--NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             HHHHHHT--T---HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHh--cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            3333332  1234455667788889999999999999988777778999999999999999999999999999999874

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.64  E-value=0.43  Score=42.03  Aligned_cols=137  Identities=12%  Similarity=0.020  Sum_probs=92.8

Q ss_pred             hHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHH-----HH
Q 008276          266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLEN-----AL  340 (571)
Q Consensus       266 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l  340 (571)
                      .-+.++..+...|.+.-.++.+++.++...+.+......+.+...+.||.+.|...|+...+..-..+...++     ..
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            3455666777778888888888888887656677777788888888899998888888776543233333332     33


Q ss_pred             HHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 008276          341 VDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFV  404 (571)
Q Consensus       341 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  404 (571)
                      ...|.-.+++..|...+.++..   .++...|.-.-+..-.|+..+|++.++.|..  ..|...+-+
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~e  323 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHE  323 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence            3445566777778888877764   3444555555555566788888888888877  455544333

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.63  E-value=0.63  Score=43.89  Aligned_cols=151  Identities=11%  Similarity=-0.049  Sum_probs=79.4

Q ss_pred             HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH--HhccCCchHHHHHHHHHHHHcCCCCChhHHHH----------
Q 008276          272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLP--ACGDLSALLLGRKIHRYVERKKLQPNLRLENA----------  339 (571)
Q Consensus       272 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------  339 (571)
                      .++...|++++|.+.--..++.. ..  ..+...++  ++...++.+.+...|++.+..+  |+...-..          
T Consensus       177 ~cl~~~~~~~~a~~ea~~ilkld-~~--n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~  251 (486)
T KOG0550|consen  177 ECLAFLGDYDEAQSEAIDILKLD-AT--NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV  251 (486)
T ss_pred             hhhhhcccchhHHHHHHHHHhcc-cc--hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence            45666778888877666555432 11  22223333  2344567777777777777654  32221111          


Q ss_pred             ---HHHHHHhcCCHHHHHHHHhhCCC-------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 008276          340 ---LVDMYAKCGSLTEARTVFDQMRC-------QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI-AFVSVLS  408 (571)
Q Consensus       340 ---l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~  408 (571)
                         -..-..+.|++..|.+.|.+...       ++...|........+.|+.++|+.--++..+  +.|... .|..-..
T Consensus       252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~  329 (486)
T KOG0550|consen  252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRAN  329 (486)
T ss_pred             HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHH
Confidence               11223455666666666666553       2333455555555666666666666655554  333221 3333333


Q ss_pred             HhhcCCCHHHHHHHHHHHHHh
Q 008276          409 ACSHAGLLEEGRYYFKIMTEQ  429 (571)
Q Consensus       409 ~~~~~~~~~~a~~~~~~~~~~  429 (571)
                      ++...++|++|.+-++...+.
T Consensus       330 c~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  330 CHLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            444556666666666665543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.63  E-value=0.0042  Score=44.60  Aligned_cols=60  Identities=12%  Similarity=0.209  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 008276          438 HFACLVDLLGRAGKVEEAYDLIKQM-------P-MEPN-ERIWGSLVAACCLYSNMDIGILAADHIFHL  497 (571)
Q Consensus       438 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  497 (571)
                      +++.+...|...|++++|++.|++.       + ..|+ ..++..+...+...|++++|++.++++.++
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4555555566666666655555544       1 1121 345566666677777777777777776653

...

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.59  E-value=0.037  Score=43.70  Aligned_cols=53  Identities=15%  Similarity=0.237  Sum_probs=40.8

Q ss_pred             CCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008276          394 SGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL  446 (571)
Q Consensus       394 ~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  446 (571)
                      ....|+..+..+++.+|+..+++..|.++.+...+.++++.+..+|..|++=.
T Consensus        46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~   98 (126)
T PF12921_consen   46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA   98 (126)
T ss_pred             CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            34667888888888888888888888888888888888777777777776643

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.58  E-value=0.74  Score=44.02  Aligned_cols=96  Identities=6%  Similarity=0.015  Sum_probs=60.6

Q ss_pred             CChHHHHHHHHHHHHhhcCCCChhHHHHHHHH--hhcCCChHHHHHHHcccCC------------------CChhhHHHH
Q 008276           42 PDIKTLKKLHAQIIINQHLHSNPSIGLKLMRT--YGACGQMVDTRHVFDEITN------------------KNVVFFNVL  101 (571)
Q Consensus        42 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~------------------~~~~~~~~l  101 (571)
                      .+++........+.+..|.  +  .|..|..+  +-+.+.+.+|.+.|....+                  ++...-+..
T Consensus        59 ~nld~Me~~l~~l~~~~~~--s--~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~  134 (549)
T PF07079_consen   59 NNLDLMEKQLMELRQQFGK--S--AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIE  134 (549)
T ss_pred             hhHHHHHHHHHHHHHhcCC--c--hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHH
Confidence            4556666666666533332  2  33333333  3467889999988865432                  122234566


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhCC----CCCCcccHHHHHHHhh
Q 008276          102 IRSYVNNYLYYDALHVYKNMSVHG----FDPDCYTYPCVLKACS  141 (571)
Q Consensus       102 i~~~~~~~~~~~A~~~~~~m~~~g----~~p~~~~~~~li~~~~  141 (571)
                      +.++...|++.++..+++++...=    ...+..+|+.++-.++
T Consensus       135 a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmls  178 (549)
T PF07079_consen  135 AHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLS  178 (549)
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHh
Confidence            788999999999999999886543    3378888887554443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PRK11906 transcriptional regulator; Provisional

Probab=96.58  E-value=0.056  Score=51.96  Aligned_cols=142  Identities=9%  Similarity=0.087  Sum_probs=78.4

Q ss_pred             hHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHhhcC---------CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 008276          381 GYDAVALFSKMLM-SGLCPDSI-AFVSVLSACSHA---------GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA  449 (571)
Q Consensus       381 ~~~a~~~~~~m~~-~g~~p~~~-~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  449 (571)
                      .+.|+.+|.+... ..+.|+.. .|..+..++...         .+..+|.++-++..+.  -+.|+.....+..++.-.
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~  351 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhh
Confidence            4567777777772 12556544 555554443221         2234455555555542  234455555556666666


Q ss_pred             CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH--HHHHHHHHhcCCHHHHHHHH
Q 008276          450 GKVEEAYDLIKQM-PMEPN-ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY--VLLSNIYAKAGRWGDVKRVR  525 (571)
Q Consensus       450 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~A~~~~  525 (571)
                      ++++.|...|++. ...|| ..+|-.....+.-.|+.++|.+.++++++++|....+-  ...++.|+..+ .++|+.++
T Consensus       352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~  430 (458)
T PRK11906        352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY  430 (458)
T ss_pred             cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence            6677777777776 55563 34454455555567777777777777777777544332  23333444443 45555544

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.56  E-value=0.94  Score=46.37  Aligned_cols=73  Identities=18%  Similarity=0.306  Sum_probs=44.5

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008276          404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSN  483 (571)
Q Consensus       404 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~  483 (571)
                      ...+..|.+.|-+++-.-++.+|    |     .+..+|.-.--+.++.++|.++.++-   .|...|..||..+...-.
T Consensus       638 ekA~eiC~q~~~~~E~VYlLgrm----G-----n~k~AL~lII~el~die~AIefvKeq---~D~eLWe~LI~~~ldkPe  705 (846)
T KOG2066|consen  638 EKALEICSQKNFYEELVYLLGRM----G-----NAKEALKLIINELRDIEKAIEFVKEQ---DDSELWEDLINYSLDKPE  705 (846)
T ss_pred             HHHHHHHHhhCcHHHHHHHHHhh----c-----chHHHHHHHHHHhhCHHHHHHHHHhc---CCHHHHHHHHHHhhcCcH
Confidence            44455566666666666666666    3     12333334444567777777777664   478889998887765554


Q ss_pred             HHHHH
Q 008276          484 MDIGI  488 (571)
Q Consensus       484 ~~~A~  488 (571)
                      +-.++
T Consensus       706 ~~~~l  710 (846)
T KOG2066|consen  706 FIKAL  710 (846)
T ss_pred             HHHHH
Confidence            44444

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.50  E-value=0.025  Score=50.15  Aligned_cols=102  Identities=16%  Similarity=0.183  Sum_probs=57.8

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 008276          402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP-RIEHFACLVDLLGRAGKVEEAYDLIKQM----PMEP-NERIWGSLV  475 (571)
Q Consensus       402 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~  475 (571)
                      .|+.-+.. .+.|++..|...|....+.+.-.+ ....+.-|.+++...|++++|..+|..+    +..| -+..+.-|.
T Consensus       144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            45554443 355667777777777766432111 1123344666666677777766666655    2223 234555555


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 008276          476 AACCLYSNMDIGILAADHIFHLAPNQSGY  504 (571)
Q Consensus       476 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  504 (571)
                      ....+.|+.++|...|+++.+..|..+.+
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA  251 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKRYPGTDAA  251 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence            55666666666666666666666655443

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.46  E-value=0.87  Score=43.47  Aligned_cols=128  Identities=10%  Similarity=0.121  Sum_probs=97.3

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHH
Q 008276          402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIW-GSLVAACC  479 (571)
Q Consensus       402 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~  479 (571)
                      .|...+....+..-++.|..+|-++.+..-+.+++.+++++++.++ .|+...|-.+|+-- ..-||...| .-.+.-+.
T Consensus       399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi  477 (660)
T COG5107         399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI  477 (660)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            4566677777778889999999999887226788899999999775 67888899998854 334555444 55667777


Q ss_pred             hcCCHHHHHHHHHHHHhhCCCC--chhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          480 LYSNMDIGILAADHIFHLAPNQ--SGYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       480 ~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      ..+|-+.|..+|+..++.-..+  ..+|..++.--..-|+...|..+-++|.+
T Consensus       478 ~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e  530 (660)
T COG5107         478 RINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE  530 (660)
T ss_pred             HhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence            8999999999999776643222  56899999988889999888877766653

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.42  E-value=0.22  Score=44.79  Aligned_cols=119  Identities=13%  Similarity=0.046  Sum_probs=64.5

Q ss_pred             hhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHHH
Q 008276          410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGS---LVAACCLYSNMDI  486 (571)
Q Consensus       410 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~~  486 (571)
                      ....|++.+|...|+.....  .+-+...-..++++|...|+.+.|..++..++.+-....+..   -+..+.+..+..+
T Consensus       144 ~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~  221 (304)
T COG3118         144 LIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE  221 (304)
T ss_pred             hhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence            44566667777766666553  222334445566677777777777777776643332222222   1222223333322


Q ss_pred             HHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276          487 GILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       487 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                      ... +++-...+|+|...-..++..|...|+.++|.+.+=.+..+
T Consensus       222 ~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         222 IQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             HHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            222 22334456777777777777777777777777665555433

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.39  E-value=0.57  Score=44.49  Aligned_cols=164  Identities=9%  Similarity=-0.029  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHhhc---CCCHHHHHHHHHHHHHhcCCCCCHHHHH
Q 008276          367 SWTSMISAYGMSGQGYDAVALFSKMLMSG---LCPDSIAFVSVLSACSH---AGLLEEGRYYFKIMTEQYKLVPRIEHFA  440 (571)
Q Consensus       367 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~  440 (571)
                      +...++-+|....+++..+++.+.+....   +.-....-....-++.+   .|+.++|++++..+... ...+++.+|.
T Consensus       143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~g  221 (374)
T PF13281_consen  143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLG  221 (374)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHH
Confidence            34455567999999999999999998741   11122222334455666   89999999999996554 6678888888


Q ss_pred             HHHHHHHh---------cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC-HH---HHHHHH----HHHHhhC----
Q 008276          441 CLVDLLGR---------AGKVEEAYDLIKQM-PMEPNERIWGSLVAACCLYSN-MD---IGILAA----DHIFHLA----  498 (571)
Q Consensus       441 ~l~~~~~~---------~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~-~~---~A~~~~----~~~~~~~----  498 (571)
                      .+.+.|..         ....++|.+.|.+. ..+|+...--.++..+...|. .+   +..++-    ....+.+    
T Consensus       222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~  301 (374)
T PF13281_consen  222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK  301 (374)
T ss_pred             HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence            88877643         12477888888877 556654433223333333332 22   222222    1111222    


Q ss_pred             CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276          499 PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       499 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                      -.+-..+..++.+..-.|++++|.+..++|...
T Consensus       302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            123334558888999999999999999999865

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.34  E-value=0.031  Score=53.52  Aligned_cols=61  Identities=11%  Similarity=0.026  Sum_probs=39.6

Q ss_pred             CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276          399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI----EHFACLVDLLGRAGKVEEAYDLIKQM  462 (571)
Q Consensus       399 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~  462 (571)
                      +...++.+..+|...|++++|...|++..+.   .|+.    ..|..+..+|...|+.++|++.++++
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA  138 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA  138 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3446666677777777777777777776643   3442    24666777777777777777777665

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.28  E-value=0.35  Score=48.43  Aligned_cols=158  Identities=15%  Similarity=0.110  Sum_probs=102.1

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHhhc----CCCHHHHHHHHHHHHHhcCCCCCHHHH
Q 008276          370 SMISAYGMSGQGYDAVALFSKMLMSG-LCPDS-----IAFVSVLSACSH----AGLLEEGRYYFKIMTEQYKLVPRIEHF  439 (571)
Q Consensus       370 ~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  439 (571)
                      .++....-.||-+.+++.+.+..+.+ +.-..     -.|..++..++.    ..+.+.|.++++.+.+.   -|+...|
T Consensus       193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lf  269 (468)
T PF10300_consen  193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALF  269 (468)
T ss_pred             HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHH
Confidence            34444444566666666666554422 21111     123333333332    45778899999999874   3454443


Q ss_pred             -HHHHHHHHhcCCHHHHHHHHHhCC-C-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH-HHHHH
Q 008276          440 -ACLVDLLGRAGKVEEAYDLIKQMP-M-----EPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV-LLSNI  511 (571)
Q Consensus       440 -~~l~~~~~~~g~~~~A~~~~~~~~-~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-~l~~~  511 (571)
                       -.-.+.+...|++++|++.|++.. .     +.....+--+...+....++++|...+.++.+.+.-+..+|. ..+-+
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c  349 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC  349 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence             344567778899999999999761 1     113345556677788899999999999999998776666555 44445


Q ss_pred             HHhcCCH-------HHHHHHHHHHHh
Q 008276          512 YAKAGRW-------GDVKRVRKFMNS  530 (571)
Q Consensus       512 ~~~~g~~-------~~A~~~~~~m~~  530 (571)
                      +...|+.       ++|.+++++...
T Consensus       350 ~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  350 LLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHhhccchhhhhhHHHHHHHHHHHHH
Confidence            5678888       888888887764

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.23  E-value=0.51  Score=42.58  Aligned_cols=172  Identities=13%  Similarity=0.071  Sum_probs=110.6

Q ss_pred             HHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 008276          352 EARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK  431 (571)
Q Consensus       352 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  431 (571)
                      ...++++....+....-..-.......|++.+|...|....... +-+...-..++.+|...|+.+.|..++..+-.. -
T Consensus       121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~  198 (304)
T COG3118         121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-A  198 (304)
T ss_pred             HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-c
Confidence            44445555444322222222334567888899999888888752 223456667888889999999999999887442 1


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCchhHHHH
Q 008276          432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLA--PNQSGYYVLL  508 (571)
Q Consensus       432 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l  508 (571)
                      -.........-+..+.+.....+...+-.+..-.| |...-..+...+...|+.+.|.+.+=.+++.+  -.+......+
T Consensus       199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l  278 (304)
T COG3118         199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL  278 (304)
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence            11111222334556666666555555555554456 66677778888888999999998888887765  5667778888


Q ss_pred             HHHHHhcCCHHHHHHHH
Q 008276          509 SNIYAKAGRWGDVKRVR  525 (571)
Q Consensus       509 ~~~~~~~g~~~~A~~~~  525 (571)
                      +..+.-.|..+.+...+
T Consensus       279 le~f~~~g~~Dp~~~~~  295 (304)
T COG3118         279 LELFEAFGPADPLVLAY  295 (304)
T ss_pred             HHHHHhcCCCCHHHHHH
Confidence            88888777555544333

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.21  E-value=1.5  Score=43.62  Aligned_cols=91  Identities=11%  Similarity=0.096  Sum_probs=52.1

Q ss_pred             hhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhc-CCChHHHHHHHcccCC------CChhhHHHHHH
Q 008276           31 GDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGA-CGQMVDTRHVFDEITN------KNVVFFNVLIR  103 (571)
Q Consensus        31 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~------~~~~~~~~li~  103 (571)
                      |..++..-.+.|..+.+..+|++-+  .+++.+...|...+..+.. .|+.+...+.|+....      .+...|...|.
T Consensus        82 W~kfA~~E~klg~~~~s~~Vfergv--~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie  159 (577)
T KOG1258|consen   82 WKKFADYEYKLGNAENSVKVFERGV--QAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIE  159 (577)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHH
Confidence            3344444555566666666666665  5556666666655554443 3555556666655443      23345666666


Q ss_pred             HHHHcCChhHHHHHHHHHHh
Q 008276          104 SYVNNYLYYDALHVYKNMSV  123 (571)
Q Consensus       104 ~~~~~~~~~~A~~~~~~m~~  123 (571)
                      --..++++.....+|++..+
T Consensus       160 ~en~qks~k~v~~iyeRile  179 (577)
T KOG1258|consen  160 FENGQKSWKRVANIYERILE  179 (577)
T ss_pred             HHhccccHHHHHHHHHHHHh
Confidence            66666666666666666655

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.15  E-value=0.17  Score=46.55  Aligned_cols=48  Identities=6%  Similarity=0.038  Sum_probs=26.8

Q ss_pred             HHHcCCchHHHHHHHHHHHCC--CCCCHHHHHHHHHHhccCCchHHHHHH
Q 008276          274 YANNSMPAEAVDLYLQMEVHG--IEPNAISVASVLPACGDLSALLLGRKI  321 (571)
Q Consensus       274 ~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~  321 (571)
                      +....+.++|+..|.+-..+-  ..-...++..+..+.++.|.++++...
T Consensus        16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~   65 (518)
T KOG1941|consen   16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF   65 (518)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence            445667788887777765431  111224455555566666666555443

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.14  E-value=0.1  Score=46.20  Aligned_cols=126  Identities=14%  Similarity=0.180  Sum_probs=86.5

Q ss_pred             HHHHHccCC--CCCchhHHHHHHHHHhC-----CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHH
Q 008276          184 ARRVLNDMP--SKDVVTWNSMVAGYAQN-----GRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMF  256 (571)
Q Consensus       184 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~  256 (571)
                      .+..|....  ++|..+|-..+..+...     +.++-....++.|.+.|+.-|..+|+.||..+-+.....-..     
T Consensus        53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nv-----  127 (406)
T KOG3941|consen   53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNV-----  127 (406)
T ss_pred             hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHH-----
Confidence            344555555  46777888888777653     556777778889999999999999999998876654421111     


Q ss_pred             hhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCch-HHHHHHHHHHH
Q 008276          257 LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL-LLGRKIHRYVE  326 (571)
Q Consensus       257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~  326 (571)
                                +....-.|-  .+-+-+++++++|...|+.||..+-..+++++.+.+-. .+..++.-.|-
T Consensus       128 ----------fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP  186 (406)
T KOG3941|consen  128 ----------FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP  186 (406)
T ss_pred             ----------HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence                      222222222  24466899999999999999999999999999887743 33333333333

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.13  E-value=0.039  Score=42.56  Aligned_cols=88  Identities=17%  Similarity=0.066  Sum_probs=43.0

Q ss_pred             hhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCC
Q 008276          410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM----PMEPN--ERIWGSLVAACCLYSN  483 (571)
Q Consensus       410 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~  483 (571)
                      ++..|+++.|++.|.+...  -.+.....||.-..++.-+|+.++|++-+++.    +-+..  -..|..-...|...|+
T Consensus        53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            4455666666666655553  22334455555556665566666555555544    11110  1112222223444555


Q ss_pred             HHHHHHHHHHHHhhCC
Q 008276          484 MDIGILAADHIFHLAP  499 (571)
Q Consensus       484 ~~~A~~~~~~~~~~~p  499 (571)
                      .+.|..-|+.+-+++.
T Consensus       131 dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  131 DDAARADFEAAAQLGS  146 (175)
T ss_pred             hHHHHHhHHHHHHhCC
Confidence            5555555555555553

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.05  E-value=0.17  Score=45.08  Aligned_cols=94  Identities=21%  Similarity=0.305  Sum_probs=50.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHH
Q 008276          368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCP--DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI-EHFACLVD  444 (571)
Q Consensus       368 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~  444 (571)
                      |+.-+..+ +.|++..|...|...++....-  ....+.-|..++...|+++.|..+|..+.+.++-.|.. +.+..|..
T Consensus       145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            55444433 3455666666666666532110  11133345566666666666666666666554444433 55555666


Q ss_pred             HHHhcCCHHHHHHHHHhC
Q 008276          445 LLGRAGKVEEAYDLIKQM  462 (571)
Q Consensus       445 ~~~~~g~~~~A~~~~~~~  462 (571)
                      ...+.|+.++|...|+++
T Consensus       224 ~~~~l~~~d~A~atl~qv  241 (262)
T COG1729         224 SLGRLGNTDEACATLQQV  241 (262)
T ss_pred             HHHHhcCHHHHHHHHHHH
Confidence            666666666666666655

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.02  E-value=0.029  Score=46.86  Aligned_cols=103  Identities=12%  Similarity=0.061  Sum_probs=71.6

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHh
Q 008276          408 SACSHAGLLEEGRYYFKIMTEQYKLVPRI-----EHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNE-RIWGSLVAACCL  480 (571)
Q Consensus       408 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~  480 (571)
                      .-+.+.|++++|..-|..+.+.  .++..     ..|..-.-++.+.+.++.|++-..+. .+.|.. ....--..+|.+
T Consensus       103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek  180 (271)
T KOG4234|consen  103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK  180 (271)
T ss_pred             HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence            4467889999999999888874  33322     34556666788888888888877766 555532 222223446777


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 008276          481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIY  512 (571)
Q Consensus       481 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  512 (571)
                      ...+++|+.-|+++.+.+|....+....+..-
T Consensus       181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl~  212 (271)
T KOG4234|consen  181 MEKYEEALEDYKKILESDPSRREAREAIARLP  212 (271)
T ss_pred             hhhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence            88899999999999999987776666655543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.98  E-value=0.032  Score=52.21  Aligned_cols=65  Identities=11%  Similarity=0.018  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          468 ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      ..+++.+..+|.+.+++..|+....++++.+|+|..+.+.-+.+|...|.++.|+..|+++.+..
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~  321 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE  321 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence            34677788889999999999999999999999999999999999999999999999999998654

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.97  E-value=0.14  Score=42.15  Aligned_cols=53  Identities=23%  Similarity=0.337  Sum_probs=21.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276          442 LVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHI  494 (571)
Q Consensus       442 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~  494 (571)
                      ++..+...|++++|..+++++ ...| +...|..++.++...|+...|++.|+++
T Consensus        68 l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   68 LAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            334444444444444444444 2223 3444444444444444444444444443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.93  E-value=1  Score=39.32  Aligned_cols=86  Identities=13%  Similarity=0.083  Sum_probs=47.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhCC-----C--CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CCCchhHH
Q 008276          439 FACLVDLLGRAGKVEEAYDLIKQMP-----M--EPNE-RIWGSLVAACCLYSNMDIGILAADHIFHLA----PNQSGYYV  506 (571)
Q Consensus       439 ~~~l~~~~~~~g~~~~A~~~~~~~~-----~--~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~  506 (571)
                      +....+.|.+..++++|-..+.+-+     +  -|+. ..|...|-.+....|+..|+..++...+..    |.+..+..
T Consensus       153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le  232 (308)
T KOG1585|consen  153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE  232 (308)
T ss_pred             HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence            4445555666666666655554431     1  1111 234444455556667777777777655533    55566666


Q ss_pred             HHHHHHHhcCCHHHHHHHH
Q 008276          507 LLSNIYAKAGRWGDVKRVR  525 (571)
Q Consensus       507 ~l~~~~~~~g~~~~A~~~~  525 (571)
                      .|+.+| ..|+.+++..++
T Consensus       233 nLL~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  233 NLLTAY-DEGDIEEIKKVL  250 (308)
T ss_pred             HHHHHh-ccCCHHHHHHHH
Confidence            666654 456666665543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.89  E-value=1.2  Score=39.68  Aligned_cols=191  Identities=18%  Similarity=0.145  Sum_probs=84.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhCC-----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-Hh
Q 008276          337 ENALVDMYAKCGSLTEARTVFDQMR-----CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLS-AC  410 (571)
Q Consensus       337 ~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~-~~  410 (571)
                      .......+...+++..+...+....     ......+......+...+++..+.+.+.........+. ........ .+
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  140 (291)
T COG0457          62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGAL  140 (291)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHH
Confidence            3334444444444444444444332     12223344444444444555555555555544322211 11111111 34


Q ss_pred             hcCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCHH
Q 008276          411 SHAGLLEEGRYYFKIMTEQYKL--VPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN--ERIWGSLVAACCLYSNMD  485 (571)
Q Consensus       411 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~  485 (571)
                      ...|+++.+...++..... ..  ......+......+...++.+.+...+.+. ...++  ...+..+...+...++++
T Consensus       141 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (291)
T COG0457         141 YELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE  219 (291)
T ss_pred             HHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence            4555555555555555321 10  011222223333344455555555555544 22222  344444555555555555


Q ss_pred             HHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          486 IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       486 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  529 (571)
                      .|...+.......|.....+..+...+...|.++++...+.+..
T Consensus       220 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (291)
T COG0457         220 EALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL  263 (291)
T ss_pred             HHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence            55555555555555444444444444444445555555555443

>PRK11906 transcriptional regulator; Provisional

Probab=95.82  E-value=0.55  Score=45.46  Aligned_cols=140  Identities=15%  Similarity=0.075  Sum_probs=90.5

Q ss_pred             CHHHHHHHHhhCC---CCC---hhHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 008276          349 SLTEARTVFDQMR---CQD---VVSWTSMISAYGMS---------GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHA  413 (571)
Q Consensus       349 ~~~~a~~~~~~~~---~~~---~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~  413 (571)
                      ..+.|..+|.+..   +-|   ...|..+..++...         .+..+|.++.++..+.+ +-|......+..+....
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~  351 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence            4567888888877   433   34555555544322         23456777777777753 33666777777777777


Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCCHHHHH
Q 008276          414 GLLEEGRYYFKIMTEQYKLVPRI-EHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNER---IWGSLVAACCLYSNMDIGI  488 (571)
Q Consensus       414 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~---~~~~l~~~~~~~g~~~~A~  488 (571)
                      ++++.|...|++...   +.||. ..|........-.|+.++|.+.+++. ...|.-.   .....+..|+ ....+.|+
T Consensus       352 ~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~  427 (458)
T PRK11906        352 GQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV-PNPLKNNI  427 (458)
T ss_pred             cchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc-CCchhhhH
Confidence            889999999999875   35554 55555666667789999999999884 6666433   2222333444 34567777


Q ss_pred             HHHHH
Q 008276          489 LAADH  493 (571)
Q Consensus       489 ~~~~~  493 (571)
                      .+|-+
T Consensus       428 ~~~~~  432 (458)
T PRK11906        428 KLYYK  432 (458)
T ss_pred             HHHhh
Confidence            77654

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.68  E-value=0.38  Score=43.87  Aligned_cols=160  Identities=11%  Similarity=-0.018  Sum_probs=88.5

Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHH----HHHHHHHHhcCCHH
Q 008276          378 SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF----ACLVDLLGRAGKVE  453 (571)
Q Consensus       378 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~  453 (571)
                      .|++.+|...++++.+. .+.|...+...=.+|...|+.+.-...++++..  ...++...|    ..+.-++..+|-++
T Consensus       116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence            45666666666666664 444555666566666777777666666666654  223443222    22333445667777


Q ss_pred             HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CchhHHHHHHHHHhcCCHHHHHHHHHH
Q 008276          454 EAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPN----QSGYYVLLSNIYAKAGRWGDVKRVRKF  527 (571)
Q Consensus       454 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~  527 (571)
                      +|++.-++. .+.| |.-.-.++...+...|+.+++.++..+-...-..    -..-|...+-.+...+.++.|+++|++
T Consensus       193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            777776665 4444 3334444455555667777777666654321110    112244555556666777777777766


Q ss_pred             HHhCCCCCCCceE
Q 008276          528 MNSKGIKKMPGAS  540 (571)
Q Consensus       528 m~~~~~~~~~~~~  540 (571)
                      =.-+..+++.+++
T Consensus       273 ei~k~l~k~Da~a  285 (491)
T KOG2610|consen  273 EIWKRLEKDDAVA  285 (491)
T ss_pred             HHHHHhhccchhh
Confidence            5545555555433

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.56  E-value=0.56  Score=37.55  Aligned_cols=114  Identities=11%  Similarity=0.063  Sum_probs=59.7

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 008276          372 ISAYGMSGQGYDAVALFSKMLMSGLCP---DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR  448 (571)
Q Consensus       372 i~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  448 (571)
                      .....+.|++++|.+.|+.+... .+.   ....-..++.++.+.+++++|...+++.++.+.-.|++. |...+.+++.
T Consensus        17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~gL~~   94 (142)
T PF13512_consen   17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMRGLSY   94 (142)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHHHHHH
Confidence            33445566677777777666653 221   223445566666667777777777766666544444432 2223333332


Q ss_pred             cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 008276          449 AGKVEEAYDLIKQM-PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG  503 (571)
Q Consensus       449 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  503 (571)
                      -...+..   +..+ +.+-|             .+....|...|+++++.-|++..
T Consensus        95 ~~~~~~~---~~~~~~~drD-------------~~~~~~A~~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen   95 YEQDEGS---LQSFFRSDRD-------------PTPARQAFRDFEQLVRRYPNSEY  134 (142)
T ss_pred             HHHhhhH---HhhhcccccC-------------cHHHHHHHHHHHHHHHHCcCChh
Confidence            2221111   1111 11111             12245788888889998898753

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.55  E-value=2.4  Score=40.85  Aligned_cols=150  Identities=12%  Similarity=0.005  Sum_probs=84.2

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC--HH
Q 008276          363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP---DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR--IE  437 (571)
Q Consensus       363 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~  437 (571)
                      ....+|..++..+.+.|.++.|...+.++...+...   .+.....-+..+-..|+..+|...++...+. ....+  ..
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~  222 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI  222 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence            345578888888899999999999888887743222   2233444456667778888898888887762 11111  11


Q ss_pred             HHHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 008276          438 HFACLVDLLGRAGKVEEAYDL-IKQMPMEPNERIWGSLVAACCLY------SNMDIGILAADHIFHLAPNQSGYYVLLSN  510 (571)
Q Consensus       438 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  510 (571)
                      ....+...+..  ..+..... ........-..++..+...+...      ++.+++...|+.+.+..|.....|..++.
T Consensus       223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~  300 (352)
T PF02259_consen  223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL  300 (352)
T ss_pred             cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence            11111111000  00000000 00000000112233333333334      88889999999999999988888888877


Q ss_pred             HHHhc
Q 008276          511 IYAKA  515 (571)
Q Consensus       511 ~~~~~  515 (571)
                      .+.+.
T Consensus       301 ~~~~~  305 (352)
T PF02259_consen  301 FNDKL  305 (352)
T ss_pred             HHHHH
Confidence            76554

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.53  E-value=1.6  Score=38.67  Aligned_cols=58  Identities=14%  Similarity=0.154  Sum_probs=45.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCch---hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276          474 LVAACCLYSNMDIGILAADHIFHLAPNQSG---YYVLLSNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       474 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                      +.+-|.+.|.+..|..-++++++.-|+.+.   .+..+..+|.+.|-.++|...-+-+...
T Consensus       173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N  233 (254)
T COG4105         173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN  233 (254)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence            455678899999999999999987765544   4556777899999999999887766543

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.53  E-value=0.21  Score=39.42  Aligned_cols=78  Identities=19%  Similarity=0.342  Sum_probs=39.9

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHH--------------HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----
Q 008276          401 IAFVSVLSACSHAGLLEEGRYYFKIMT--------------EQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM----  462 (571)
Q Consensus       401 ~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----  462 (571)
                      .++..++.++++.|+.+....+++..-              ......|+..+..+++.+|+..|++..|+++++..    
T Consensus         3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y   82 (126)
T PF12921_consen    3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY   82 (126)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence            344445555555555555444443321              11134455566666666666666666666655544    


Q ss_pred             CCCCCHHHHHHHHHHH
Q 008276          463 PMEPNERIWGSLVAAC  478 (571)
Q Consensus       463 ~~~p~~~~~~~l~~~~  478 (571)
                      +++-+...|..|+.-+
T Consensus        83 ~I~i~~~~W~~Ll~W~   98 (126)
T PF12921_consen   83 PIPIPKEFWRRLLEWA   98 (126)
T ss_pred             CCCCCHHHHHHHHHHH
Confidence            4444455555555543

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.52  E-value=1  Score=36.59  Aligned_cols=127  Identities=9%  Similarity=0.026  Sum_probs=74.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 008276          368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG  447 (571)
Q Consensus       368 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  447 (571)
                      ...++..+...+.......+++.+...+ ..+....+.++..|++.+ .......++.  .     .+.......++.+.
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~-----~~~yd~~~~~~~c~   80 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K-----SNHYDIEKVGKLCE   80 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c-----cccCCHHHHHHHHH
Confidence            3455666666677777777777777765 345666777777776643 2333344332  1     12222334666777


Q ss_pred             hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 008276          448 RAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLY-SNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK  514 (571)
Q Consensus       448 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  514 (571)
                      +.+.++++.-++.+++.      +...+..+... ++++.|.+++++     +.++..|..++..+..
T Consensus        81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~  137 (140)
T smart00299       81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD  137 (140)
T ss_pred             HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence            77777777777777742      22233333333 777777776664     2355677776665543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.51  E-value=0.42  Score=47.11  Aligned_cols=156  Identities=12%  Similarity=0.107  Sum_probs=89.4

Q ss_pred             HHHHHHcCChhHHHHHHH--HHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 008276          102 IRSYVNNYLYYDALHVYK--NMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG  179 (571)
Q Consensus       102 i~~~~~~~~~~~A~~~~~--~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g  179 (571)
                      .....-.++++++.++.+  ++... +  +....+.++.-+-+.|..+.|+++..+-.            .-.+...+.|
T Consensus       268 fk~av~~~d~~~v~~~i~~~~ll~~-i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg  332 (443)
T PF04053_consen  268 FKTAVLRGDFEEVLRMIAASNLLPN-I--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLG  332 (443)
T ss_dssp             HHHHHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT
T ss_pred             HHHHHHcCChhhhhhhhhhhhhccc-C--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcC
Confidence            345566677787766665  22211 1  13346677777778888888877754322            2345567888


Q ss_pred             CHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhC
Q 008276          180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKL  259 (571)
Q Consensus       180 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~  259 (571)
                      +++.|.++.++..  +...|..|.......|+++-|++.|.+..+                                   
T Consensus       333 ~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----------------------------------  375 (443)
T PF04053_consen  333 NLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----------------------------------  375 (443)
T ss_dssp             -HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------------------------------------
T ss_pred             CHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----------------------------------
Confidence            8888888877665  556888888888888888888888877543                                   


Q ss_pred             CCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHH
Q 008276          260 DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIH  322 (571)
Q Consensus       260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~  322 (571)
                             |..|+-.|...|+.++-.++.+.....| .     ++....++.-.|+.++..+++
T Consensus       376 -------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~-----~n~af~~~~~lgd~~~cv~lL  425 (443)
T PF04053_consen  376 -------FSGLLLLYSSTGDREKLSKLAKIAEERG-D-----INIAFQAALLLGDVEECVDLL  425 (443)
T ss_dssp             -------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred             -------ccccHHHHHHhCCHHHHHHHHHHHHHcc-C-----HHHHHHHHHHcCCHHHHHHHH
Confidence                   5555666666777666666666555554 1     233333333445555444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.48  E-value=0.68  Score=44.97  Aligned_cols=58  Identities=12%  Similarity=0.078  Sum_probs=32.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          472 GSLVAACCLYSNMDIGILAADHIFHLAPN--QSGYYVLLSNIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       472 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  529 (571)
                      ..+..++.+.|+.++|++.++++.+..|.  +..++..|+.+|...+++.++..++.+..
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence            33444455566666666666666555442  33455566666666666666666655543

The molecular function of this protein is uncertain.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.47  E-value=2.3  Score=40.01  Aligned_cols=278  Identities=12%  Similarity=0.007  Sum_probs=134.0

Q ss_pred             CCChHHHHHHHHHHHHhhcCCCChhHHHHHHHH--hhcCCChHHHHHHHcccCC-CChh--hHHHHHHHHHHcCChhHHH
Q 008276           41 YPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRT--YGACGQMVDTRHVFDEITN-KNVV--FFNVLIRSYVNNYLYYDAL  115 (571)
Q Consensus        41 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~-~~~~--~~~~li~~~~~~~~~~~A~  115 (571)
                      .||-..|.+.-.+..  .-+..|......|+.+  -.-.|++++|.+-|+.|.+ |...  -...|.-..-+.|..+.|.
T Consensus        97 AGda~lARkmt~~~~--~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr  174 (531)
T COG3898          97 AGDASLARKMTARAS--KLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAAR  174 (531)
T ss_pred             cCchHHHHHHHHHHH--hhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHH
Confidence            366666666555443  1223344434444332  2345777777777777764 2222  1222333334566677776


Q ss_pred             HHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhC-CCCchhH--HHHHHHHHH---hCCCHHHHHHHHc
Q 008276          116 HVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG-LDYNLFN--GNGLVAMYG---KCGCLKEARRVLN  189 (571)
Q Consensus       116 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~--~~~l~~~~~---~~g~~~~A~~~~~  189 (571)
                      ..-+..-+.- +--...+...+...+..|+++.|+++++.-+... +.++..-  -..|+.+-.   -.-+...|...-.
T Consensus       175 ~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~  253 (531)
T COG3898         175 HYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL  253 (531)
T ss_pred             HHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            6666655431 2234556667777777777777777777665543 2233211  111221110   1122333333333


Q ss_pred             cCCC--CCch-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHH--HHhhCCCCCh
Q 008276          190 DMPS--KDVV-TWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKE--MFLKLDNKNL  264 (571)
Q Consensus       190 ~~~~--~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~--~~~~~~~~~~  264 (571)
                      +..+  ||.. .--.-...+.+.|+..++-.+++.+-+....|+..    .+....+.|+...+.+..  -+..+.+.+.
T Consensus       254 ~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~nna  329 (531)
T COG3898         254 EANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRLKRAKKLESLKPNNA  329 (531)
T ss_pred             HHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCccch
Confidence            2222  3322 12223456777788888888888777765555432    222233444433333322  2333444455


Q ss_pred             hhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHh-ccCCchHHHHHHHHHHHH
Q 008276          265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPAC-GDLSALLLGRKIHRYVER  327 (571)
Q Consensus       265 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~  327 (571)
                      .+.-.+..+-...|++..|..--+....  ..|....|..|...- ...|+-.++...+.+..+
T Consensus       330 es~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         330 ESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            5555555555555555555444433332  245555554444432 233555555555554444

>PRK11619 lytic murein transglycosylase; Provisional

Probab=95.42  E-value=4.1  Score=42.62  Aligned_cols=52  Identities=8%  Similarity=-0.063  Sum_probs=29.6

Q ss_pred             CCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC
Q 008276          261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS  313 (571)
Q Consensus       261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~  313 (571)
                      +.+...-+....+....|+.++|......+-..| ......+..++..+.+.|
T Consensus       126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g  177 (644)
T PRK11619        126 PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSG  177 (644)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcC
Confidence            3445555666777777777777766666665444 233444555555444333

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.41  E-value=1.8  Score=38.41  Aligned_cols=139  Identities=13%  Similarity=0.100  Sum_probs=76.8

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 008276          374 AYGMSGQGYDAVALFSKMLMSGL--CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK  451 (571)
Q Consensus       374 ~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  451 (571)
                      .-.+.|++++|.+.|+.+.....  +-...+...++.++.+.++++.|....++....++-.||.. |-..+.++.    
T Consensus        43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs----  117 (254)
T COG4105          43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLS----  117 (254)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHH----
Confidence            34566777777777777665311  11233555566666677777777777777776666666653 222333333    


Q ss_pred             HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-----------------hHHHHHHHHH
Q 008276          452 VEEAYDLIKQMP-MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG-----------------YYVLLSNIYA  513 (571)
Q Consensus       452 ~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----------------~~~~l~~~~~  513 (571)
                            .|..+. ..-|..             -...|..-|+..+...|++.-                 .=..++.-|.
T Consensus       118 ------~~~~i~~~~rDq~-------------~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~  178 (254)
T COG4105         118 ------YFFQIDDVTRDQS-------------AARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYL  178 (254)
T ss_pred             ------HhccCCccccCHH-------------HHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  111110 000110             112334444444444454422                 2336677899


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCC
Q 008276          514 KAGRWGDVKRVRKFMNSKGIKKMP  537 (571)
Q Consensus       514 ~~g~~~~A~~~~~~m~~~~~~~~~  537 (571)
                      +.|.+..|..-+++|.+. .+.++
T Consensus       179 kr~~~~AA~nR~~~v~e~-y~~t~  201 (254)
T COG4105         179 KRGAYVAAINRFEEVLEN-YPDTS  201 (254)
T ss_pred             HhcChHHHHHHHHHHHhc-ccccc
Confidence            999999999999999877 44444

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.35  E-value=0.23  Score=45.30  Aligned_cols=116  Identities=10%  Similarity=-0.004  Sum_probs=94.2

Q ss_pred             hcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHH----HHHHHHHhcCCH
Q 008276          411 SHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PM-EPNERIWG----SLVAACCLYSNM  484 (571)
Q Consensus       411 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~----~l~~~~~~~g~~  484 (571)
                      ...|+..+|-..|+++.+  ..+.|...+...=.++.-.|+.+.-...++++ +. .||.++|.    .+.-++...|-+
T Consensus       114 ~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             hccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence            356888888899999988  56777777777778888899988888888887 32 56654443    233345579999


Q ss_pred             HHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276          485 DIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM  528 (571)
Q Consensus       485 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  528 (571)
                      ++|++..+++.+++|.+.-+...++.++...|++.++.+...+-
T Consensus       192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t  235 (491)
T KOG2610|consen  192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT  235 (491)
T ss_pred             hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence            99999999999999999999999999999999999999987653

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.34  E-value=0.041  Score=31.73  Aligned_cols=32  Identities=13%  Similarity=0.164  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 008276          469 RIWGSLVAACCLYSNMDIGILAADHIFHLAPN  500 (571)
Q Consensus       469 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  500 (571)
                      .+|..+...+...|++++|+..|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            35667777777788888888888888877775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.32  E-value=1.9  Score=38.25  Aligned_cols=219  Identities=18%  Similarity=0.081  Sum_probs=148.5

Q ss_pred             CCchHHHHHHHHHHHCCCC-CCHHHHHHHHHHhccCCchHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCCHHHHHH
Q 008276          278 SMPAEAVDLYLQMEVHGIE-PNAISVASVLPACGDLSALLLGRKIHRYVERK-KLQPNLRLENALVDMYAKCGSLTEART  355 (571)
Q Consensus       278 g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~  355 (571)
                      +....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            4455555555555543222 12455566666677777777777777766652 224445555566666777777888888


Q ss_pred             HHhhCCC--CCh-hHHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 008276          356 VFDQMRC--QDV-VSWTSMIS-AYGMSGQGYDAVALFSKMLMSGLCP----DSIAFVSVLSACSHAGLLEEGRYYFKIMT  427 (571)
Q Consensus       356 ~~~~~~~--~~~-~~~~~li~-~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  427 (571)
                      .+.....  ++. ........ .+...|+++.|...+.+...  ..|    ....+......+...++.+.+...+....
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  194 (291)
T COG0457         117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL  194 (291)
T ss_pred             HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence            8877664  222 22333333 68889999999999999866  333    23344444445677889999999999988


Q ss_pred             HhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 008276          428 EQYKLVP-RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN-ERIWGSLVAACCLYSNMDIGILAADHIFHLAPN  500 (571)
Q Consensus       428 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  500 (571)
                      ..  ... ....+..+...+...++++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus       195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         195 KL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             hh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            63  233 4677788888899999999999998887 44554 445555555555777899999999999998886

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.32  E-value=0.058  Score=30.97  Aligned_cols=32  Identities=25%  Similarity=0.311  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 008276          470 IWGSLVAACCLYSNMDIGILAADHIFHLAPNQ  501 (571)
Q Consensus       470 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  501 (571)
                      .|..+...+...|++++|+..++++++++|++
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            45566667777777777777777777777754

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK15331 chaperone protein SicA; Provisional

Probab=95.27  E-value=0.53  Score=38.64  Aligned_cols=88  Identities=11%  Similarity=0.015  Sum_probs=66.8

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCH
Q 008276          407 LSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PM-EPNERIWGSLVAACCLYSNM  484 (571)
Q Consensus       407 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~  484 (571)
                      ..-+...|++++|..+|.-+..-  -.-+..-+..|..++-..+++++|...|... -. .-|+..+-.....+...|+.
T Consensus        44 Ay~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~  121 (165)
T PRK15331         44 AYEFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA  121 (165)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence            34456789999999999988763  2345566788888888899999999998866 11 22444455567788889999


Q ss_pred             HHHHHHHHHHHh
Q 008276          485 DIGILAADHIFH  496 (571)
Q Consensus       485 ~~A~~~~~~~~~  496 (571)
                      +.|+..|+.+++
T Consensus       122 ~~A~~~f~~a~~  133 (165)
T PRK15331        122 AKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998887

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.24  E-value=4.2  Score=41.72  Aligned_cols=124  Identities=14%  Similarity=0.025  Sum_probs=74.1

Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCC--hHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 008276           99 NVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS--LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYG  176 (571)
Q Consensus        99 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~  176 (571)
                      ..++.-+...+.|..|+++-..+...-.+. ...|.....-+.+..+  -+.+.+..++=+... ..+...|..+.+...
T Consensus       441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~~Ay  518 (829)
T KOG2280|consen  441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIARRAY  518 (829)
T ss_pred             hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHHHHH
Confidence            456777888888999998887775432222 4455555544444422  122222222222221 134556777888888


Q ss_pred             hCCCHHHHHHHHccCCCC--------CchhHHHHHHHHHhCCCchHHHHHHHHHHH
Q 008276          177 KCGCLKEARRVLNDMPSK--------DVVTWNSMVAGYAQNGRFDEALDVCREMES  224 (571)
Q Consensus       177 ~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  224 (571)
                      .+|+.+-|..+++.=+..        +..-+...+.-+.+.|+.+-...++-.+.+
T Consensus       519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~  574 (829)
T KOG2280|consen  519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN  574 (829)
T ss_pred             hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            899999999888644321        223455566667777887777777766654

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.06  E-value=3  Score=40.78  Aligned_cols=58  Identities=9%  Similarity=0.004  Sum_probs=34.3

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 008276          369 TSMISAYGMSGQGYDAVALFSKMLMSGLC-PDSIAFVSVLSACSHAGLLEEGRYYFKIM  426 (571)
Q Consensus       369 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~  426 (571)
                      ..+..++-+.|+.++|++.+++|.+.... -+......|+.++...+.+.++..++.+.
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            34555555667777777777776653211 12225556666677777777777666665

The molecular function of this protein is uncertain.

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.96  E-value=1.6  Score=35.39  Aligned_cols=89  Identities=16%  Similarity=0.212  Sum_probs=57.8

Q ss_pred             cCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHH
Q 008276           28 LLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVN  107 (571)
Q Consensus        28 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~  107 (571)
                      ......++..+...+.+..+...++.+. ..+ +.++..++.++..|++.+ ..+..+.+..  ..+......+++.|.+
T Consensus         7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~-~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~   81 (140)
T smart00299        7 PIDVSEVVELFEKRNLLEELIPYLESAL-KLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEK   81 (140)
T ss_pred             cCCHHHHHHHHHhCCcHHHHHHHHHHHH-ccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHH
Confidence            3455667777877788888888888887 555 367778888888888754 3444444442  2233344446666666


Q ss_pred             cCChhHHHHHHHHH
Q 008276          108 NYLYYDALHVYKNM  121 (571)
Q Consensus       108 ~~~~~~A~~~~~~m  121 (571)
                      .+-++++.-++.++
T Consensus        82 ~~l~~~~~~l~~k~   95 (140)
T smart00299       82 AKLYEEAVELYKKD   95 (140)
T ss_pred             cCcHHHHHHHHHhh
Confidence            66666666666554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.93  E-value=1.6  Score=45.23  Aligned_cols=138  Identities=12%  Similarity=0.089  Sum_probs=66.8

Q ss_pred             HHHHhcCCHHHHHHHHhhCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHH
Q 008276          342 DMYAKCGSLTEARTVFDQMRC-QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGR  420 (571)
Q Consensus       342 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~  420 (571)
                      +-+.+.|++++|...|-+... -++   ..+|.-|.......+-..+++.+.+.|+.-... -..|+.+|.+.++.+.-.
T Consensus       376 d~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dh-ttlLLncYiKlkd~~kL~  451 (933)
T KOG2114|consen  376 DYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKNLTSYLEALHKKGLANSDH-TTLLLNCYIKLKDVEKLT  451 (933)
T ss_pred             HHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHHHHHHHHHHHHcccccchh-HHHHHHHHHHhcchHHHH
Confidence            334455666666655554432 111   123344455555555566666666665543322 244566666666666655


Q ss_pred             HHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008276          421 YYFKIMTEQYKLV-PRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADH  493 (571)
Q Consensus       421 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  493 (571)
                      ++.+..- . |.. -|.   ...++.+.+.+-.++|..+-.+.+.  .......++   -..+++++|++.++.
T Consensus       452 efI~~~~-~-g~~~fd~---e~al~Ilr~snyl~~a~~LA~k~~~--he~vl~ill---e~~~ny~eAl~yi~s  515 (933)
T KOG2114|consen  452 EFISKCD-K-GEWFFDV---ETALEILRKSNYLDEAELLATKFKK--HEWVLDILL---EDLHNYEEALRYISS  515 (933)
T ss_pred             HHHhcCC-C-cceeeeH---HHHHHHHHHhChHHHHHHHHHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhc
Confidence            5554432 1 211 122   2344555555556666555555432  222222222   235666666666553

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.87  E-value=3.2  Score=38.41  Aligned_cols=19  Identities=21%  Similarity=0.281  Sum_probs=14.2

Q ss_pred             HhCCCchHHHHHHHHHHHC
Q 008276          207 AQNGRFDEALDVCREMESL  225 (571)
Q Consensus       207 ~~~g~~~~a~~~~~~m~~~  225 (571)
                      .+.|+.+.|..++.+....
T Consensus         4 ~~~~~~~~A~~~~~K~~~~   22 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDL   22 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhH
Confidence            4678888888888877653

It is also involved in sporulation [].

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=94.83  E-value=0.24  Score=44.04  Aligned_cols=110  Identities=15%  Similarity=0.164  Sum_probs=73.9

Q ss_pred             HHHHHcccC--CCChhhHHHHHHHHHHc-----CChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCC-----------
Q 008276           83 TRHVFDEIT--NKNVVFFNVLIRSYVNN-----YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSN-----------  144 (571)
Q Consensus        83 A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-----------  144 (571)
                      ....|...+  +++-.+|-..+..+...     +..+=.-..++.|.+.|+.-|..+|+.|++.+-+..           
T Consensus        53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F  132 (406)
T KOG3941|consen   53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF  132 (406)
T ss_pred             hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence            344555555  45666777777666433     345555566777888888888888888887764432           


Q ss_pred             -----ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCH-HHHHHHHccCC
Q 008276          145 -----SLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCL-KEARRVLNDMP  192 (571)
Q Consensus       145 -----~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~  192 (571)
                           +-+-+..++++|...|+-||..+-..|++++.+.+-. .+..++.-.|+
T Consensus       133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP  186 (406)
T KOG3941|consen  133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP  186 (406)
T ss_pred             hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence                 3356778888998889989988888888888877653 23334433443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.78  E-value=0.36  Score=37.48  Aligned_cols=88  Identities=19%  Similarity=0.044  Sum_probs=54.5

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCC
Q 008276          374 AYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI--EHFACLVDLLGRAGK  451 (571)
Q Consensus       374 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~  451 (571)
                      ++...|+.+.|++.|.+.+.. .+-....|+.-.+++.-.|+.++|+.-+++..+..|-....  ..|..-...|...|+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            456677777777777777763 23355577777777777777777777777776643322111  223333445666677


Q ss_pred             HHHHHHHHHhC
Q 008276          452 VEEAYDLIKQM  462 (571)
Q Consensus       452 ~~~A~~~~~~~  462 (571)
                      .+.|..-|+..
T Consensus       131 dd~AR~DFe~A  141 (175)
T KOG4555|consen  131 DDAARADFEAA  141 (175)
T ss_pred             hHHHHHhHHHH
Confidence            77777666654

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.60  E-value=1.3  Score=44.44  Aligned_cols=158  Identities=15%  Similarity=0.136  Sum_probs=92.2

Q ss_pred             HHHHHHhccCCchHHHHHHHHHHHHcCCCCCh------hHHHHHHHHHH----hcCCHHHHHHHHhhCCC--CChhHHHH
Q 008276          303 ASVLPACGDLSALLLGRKIHRYVERKKLQPNL------RLENALVDMYA----KCGSLTEARTVFDQMRC--QDVVSWTS  370 (571)
Q Consensus       303 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~----~~~~~~~a~~~~~~~~~--~~~~~~~~  370 (571)
                      ..++....-.||-+.+.+.+....+.+--..+      -.|...+..++    .....+.|.++++.+.+  |+...|..
T Consensus       192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~  271 (468)
T PF10300_consen  192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF  271 (468)
T ss_pred             HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            34455555566777777766665543211111      12222222222    24467778888888776  76665544


Q ss_pred             H-HHHHHhcCChHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHH-HHHH
Q 008276          371 M-ISAYGMSGQGYDAVALFSKMLMSG--L-CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC-LVDL  445 (571)
Q Consensus       371 l-i~~~~~~~~~~~a~~~~~~m~~~g--~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~  445 (571)
                      . .+.+...|+.++|++.|++.....  . +.....+.-+.-.+....+|++|...|..+.+....  +..+|.- ..-+
T Consensus       272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W--Ska~Y~Y~~a~c  349 (468)
T PF10300_consen  272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW--SKAFYAYLAAAC  349 (468)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc--HHHHHHHHHHHH
Confidence            3 345667788888888888765411  1 112335555666677788888888888888875333  2333322 2334


Q ss_pred             HHhcCCH-------HHHHHHHHhC
Q 008276          446 LGRAGKV-------EEAYDLIKQM  462 (571)
Q Consensus       446 ~~~~g~~-------~~A~~~~~~~  462 (571)
                      +...|+.       ++|.++|.+.
T Consensus       350 ~~~l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  350 LLMLGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             HHhhccchhhhhhHHHHHHHHHHH
Confidence            4556666       7788888776

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=94.49  E-value=13  Score=43.79  Aligned_cols=311  Identities=11%  Similarity=-0.002  Sum_probs=170.3

Q ss_pred             HHHHHHHhCCCHHHHHHHHccCC----CC--CchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcC
Q 008276          170 GLVAMYGKCGCLKEARRVLNDMP----SK--DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN  243 (571)
Q Consensus       170 ~l~~~~~~~g~~~~A~~~~~~~~----~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~  243 (571)
                      .+..+-.+++.+.+|...++.-.    +.  ....|-.+...|...+++|...-+...-..   .|              
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~-------------- 1450 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DP-------------- 1450 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Cc--------------
Confidence            34455667777888877777632    11  112334444477777777776666553111   11              


Q ss_pred             CCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHH
Q 008276          244 TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHR  323 (571)
Q Consensus       244 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  323 (571)
                                            ....-|......|++..|...|+.+...+ ++...+++.++......+.++...-..+
T Consensus      1451 ----------------------sl~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~d 1507 (2382)
T KOG0890|consen 1451 ----------------------SLYQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLD 1507 (2382)
T ss_pred             ----------------------cHHHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhc
Confidence                                  12233445567889999999999998764 3446778888888777788777776555


Q ss_pred             HHHHcCCCCChhHHH-HHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHH--HHHHHhcC--ChHHHHHHHHHHHHCCCCC
Q 008276          324 YVERKKLQPNLRLEN-ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSM--ISAYGMSG--QGYDAVALFSKMLMSGLCP  398 (571)
Q Consensus       324 ~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l--i~~~~~~~--~~~~a~~~~~~m~~~g~~p  398 (571)
                      ...... .+....++ .=+.+--+.++++.....+.   ..+..+|...  +....+..  +.-.-.+..+.+++.-+.|
T Consensus      1508 g~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~ 1583 (2382)
T KOG0890|consen 1508 GLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN 1583 (2382)
T ss_pred             chhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh
Confidence            544332 23333333 33444467777777777766   4455555544  22222222  2111222333333321111


Q ss_pred             --------CH-HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 008276          399 --------DS-IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI------EHFACLVDLLGRAGKVEEAYDLIKQM-  462 (571)
Q Consensus       399 --------~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~-  462 (571)
                              +. ..|..++....-. +.+.-.+.+.      +..++.      ..|..-++.-....+..+-+-.+++. 
T Consensus      1584 lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l~------~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~ 1656 (2382)
T KOG0890|consen 1584 LSACSIEGSYVRSYEILMKLHLLL-ELENSIEELK------KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSM 1656 (2382)
T ss_pred             HHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHhh------ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHH
Confidence                    10 1333333322211 1111111111      222222      22322222211111222221112211 


Q ss_pred             ---CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008276          463 ---PMEP-----NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI  533 (571)
Q Consensus       463 ---~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  533 (571)
                         ..+|     -..+|....+.....|.++.|...+-.+.+..+  +.++.-.++.+.+.|+...|..++++..+...
T Consensus      1657 l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1657 LDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred             HHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence               1122     345788888999999999999999888888774  56788999999999999999999999886543

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=94.30  E-value=0.68  Score=36.12  Aligned_cols=62  Identities=10%  Similarity=0.111  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcC
Q 008276          267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK  329 (571)
Q Consensus       267 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  329 (571)
                      ...-++.+...|+-+.-.+++..+.+.+ .+++.....+..+|.+.|+..++..++.++-+.|
T Consensus        89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence            3344555566666666666666655422 5555666666666666666666666666666555

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.18  E-value=0.29  Score=44.36  Aligned_cols=59  Identities=20%  Similarity=0.245  Sum_probs=31.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          471 WGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       471 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  529 (571)
                      +..++..+...|+++.+...+++.+..+|-+...|..++.+|.+.|+...|++.++++.
T Consensus       156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~  214 (280)
T COG3629         156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK  214 (280)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            33444444455555555555555555555555555555555555555555555555544

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.18  E-value=1.9  Score=35.58  Aligned_cols=129  Identities=13%  Similarity=0.138  Sum_probs=81.9

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHH-HH--HH
Q 008276          366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE-HF--AC  441 (571)
Q Consensus       366 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~--~~  441 (571)
                      ..|..-++ +.+.+..++|+.-|..+.+.|...=+. ............|+-..|...|+++-.. .-.|... -.  .-
T Consensus        60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlr  137 (221)
T COG4649          60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLR  137 (221)
T ss_pred             HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHH
Confidence            34444443 467788899999999988876542221 2222334456788889999999988765 2233321 11  11


Q ss_pred             HHHHHHhcCCHHHHHHHHHhCC--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          442 LVDLLGRAGKVEEAYDLIKQMP--MEP-NERIWGSLVAACCLYSNMDIGILAADHIFH  496 (571)
Q Consensus       442 l~~~~~~~g~~~~A~~~~~~~~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  496 (571)
                      -...+...|.+++...-.+.+.  -.| ....-..|.-+-.+.|++..|.+.|+.+..
T Consensus       138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            2334567888888888887772  222 334445666677788888888888888776

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=94.16  E-value=3.4  Score=35.58  Aligned_cols=159  Identities=14%  Similarity=0.098  Sum_probs=83.9

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 008276          365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLV  443 (571)
Q Consensus       365 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  443 (571)
                      +..||-|.-.+...|+++.|.+.|+...+  ..|... +...-.-++...|++.-|.+-+...-+.....|-...|.-+.
T Consensus        99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~  176 (297)
T COG4785          99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN  176 (297)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence            34677777777788888888888888877  344322 222222234456788877766555544312222223332222


Q ss_pred             HHHHhcCCHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------chhHHHHHHHHHhc
Q 008276          444 DLLGRAGKVEEAYDLIK-QMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ-------SGYYVLLSNIYAKA  515 (571)
Q Consensus       444 ~~~~~~g~~~~A~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~  515 (571)
                         .+.-+..+|..-+. +.. ..|..-|...+-.+.- |+..+ +.+++++.....++       ..+|+-+++-+...
T Consensus       177 ---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~  250 (297)
T COG4785         177 ---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL  250 (297)
T ss_pred             ---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence               23345666654433 331 2233444443333321 22111 22333333322222       34677888888888


Q ss_pred             CCHHHHHHHHHHHHhC
Q 008276          516 GRWGDVKRVRKFMNSK  531 (571)
Q Consensus       516 g~~~~A~~~~~~m~~~  531 (571)
                      |..++|..+|+-....
T Consensus       251 G~~~~A~~LfKLaian  266 (297)
T COG4785         251 GDLDEATALFKLAVAN  266 (297)
T ss_pred             ccHHHHHHHHHHHHHH
Confidence            8888888888766543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.89  E-value=2.2  Score=42.21  Aligned_cols=161  Identities=16%  Similarity=0.043  Sum_probs=99.1

Q ss_pred             HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHH
Q 008276          272 AVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLT  351 (571)
Q Consensus       272 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  351 (571)
                      ....-.++++++....+.-.-.. ..+..-...++.-+.+.|-.+.|.++-..         ..   .-.+...+.|+++
T Consensus       269 k~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~  335 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLD  335 (443)
T ss_dssp             HHHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HH
T ss_pred             HHHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHH
Confidence            44556778888777665211100 11244466777777788888887776432         21   2334567789999


Q ss_pred             HHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 008276          352 EARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK  431 (571)
Q Consensus       352 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  431 (571)
                      .|.++.++..  +...|..|.+.....|+++-|.+.|.+..+         |..|+-.|.-.|+.+...++.+..... +
T Consensus       336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~  403 (443)
T PF04053_consen  336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G  403 (443)
T ss_dssp             HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c
Confidence            9988877765  666899999999999999999988887544         556666677788887777777666553 2


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 008276          432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQMP  463 (571)
Q Consensus       432 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  463 (571)
                         +   ++....++.-.|+.++..+++.+.+
T Consensus       404 ---~---~n~af~~~~~lgd~~~cv~lL~~~~  429 (443)
T PF04053_consen  404 ---D---INIAFQAALLLGDVEECVDLLIETG  429 (443)
T ss_dssp             -------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred             ---C---HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence               1   3444555566788888888877764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=93.70  E-value=13  Score=40.68  Aligned_cols=139  Identities=17%  Similarity=0.106  Sum_probs=83.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHH
Q 008276          339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEE  418 (571)
Q Consensus       339 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~  418 (571)
                      -.++.--+.|-+.+|..++..-.+.--..|.+..+.+.....+++|.-.|+..-+         ..-.+.+|..+|+|.+
T Consensus       913 e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~  983 (1265)
T KOG1920|consen  913 ECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWRE  983 (1265)
T ss_pred             HHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHH
Confidence            3344444555666666555433322233455556666677888888877765433         2334677788889999


Q ss_pred             HHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          419 GRYYFKIMTEQYKLVPRI--EHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIF  495 (571)
Q Consensus       419 a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  495 (571)
                      |..+..++..    .-+.  .+-..|+..+...++.-+|-++..+...+|..     .+..+++...+++|+.+.....
T Consensus       984 ~l~~a~ql~~----~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen  984 ALSLAAQLSE----GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred             HHHHHHhhcC----CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhcc
Confidence            8888877743    1222  22356777788888888888888777333322     2334455556666666555443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.50  E-value=0.17  Score=29.58  Aligned_cols=26  Identities=15%  Similarity=0.134  Sum_probs=19.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          504 YYVLLSNIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       504 ~~~~l~~~~~~~g~~~~A~~~~~~m~  529 (571)
                      +|..|+.+|.+.|++++|++++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            36778888888888888888888744

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.33  E-value=7  Score=36.54  Aligned_cols=125  Identities=14%  Similarity=0.102  Sum_probs=71.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhCCC-------C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCHHHH-
Q 008276          338 NALVDMYAKCGSLTEARTVFDQMRC-------Q--DVVSWTSMISAYGMSGQGYDAVALFSKMLM----SGLCPDSIAF-  403 (571)
Q Consensus       338 ~~l~~~~~~~~~~~~a~~~~~~~~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~~~~-  403 (571)
                      ..+..++...+.++++.+.|+...+       +  ....+-.|...|.+..|+++|.-+..+..+    .++.--...| 
T Consensus       126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr  205 (518)
T KOG1941|consen  126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR  205 (518)
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence            3455566666677777777765542       1  233567777777777888877766655443    2222111122 


Q ss_pred             ----HHHHHHhhcCCCHHHHHHHHHHHHHhc---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276          404 ----VSVLSACSHAGLLEEGRYYFKIMTEQY---KLVP-RIEHFACLVDLLGRAGKVEEAYDLIKQM  462 (571)
Q Consensus       404 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~  462 (571)
                          ..+.-++...|.+-.|.+.-++..+.-   |..+ .......+.+.|...|+.|.|..-++..
T Consensus       206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A  272 (518)
T KOG1941|consen  206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA  272 (518)
T ss_pred             HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence                223345566677777776666654421   2222 1234456777787888877776666544

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.22  E-value=0.19  Score=29.43  Aligned_cols=28  Identities=11%  Similarity=0.023  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 008276          470 IWGSLVAACCLYSNMDIGILAADHIFHL  497 (571)
Q Consensus       470 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~  497 (571)
                      +|..|...|.+.|++++|+.+|++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4677888888899999999999885543

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=93.18  E-value=2.5  Score=39.26  Aligned_cols=94  Identities=10%  Similarity=0.185  Sum_probs=52.6

Q ss_pred             HHHHHHHHhhCCC-------CChhHHHHHHHHHHhcCC----hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhhcCCC-
Q 008276          350 LTEARTVFDQMRC-------QDVVSWTSMISAYGMSGQ----GYDAVALFSKMLMSGLCPDSI--AFVSVLSACSHAGL-  415 (571)
Q Consensus       350 ~~~a~~~~~~~~~-------~~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~~~-  415 (571)
                      ..+|..+|+.|.+       ++..++..++..  ..++    .+.++.+|+.+.+.|+..+..  ....++..+..... 
T Consensus       119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~  196 (297)
T PF13170_consen  119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE  196 (297)
T ss_pred             HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence            3445556665553       233444444433  2222    356677888888878776544  33333333322222 


Q ss_pred             -HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008276          416 -LEEGRYYFKIMTEQYKLVPRIEHFACLVDLL  446 (571)
Q Consensus       416 -~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  446 (571)
                       ...+.++++.+.+. ++++....|..+.-..
T Consensus       197 ~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLa  227 (297)
T PF13170_consen  197 KVARVIELYNALKKN-GVKIKYMHYPTLGLLA  227 (297)
T ss_pred             HHHHHHHHHHHHHHc-CCccccccccHHHHHH
Confidence             34677788888776 8888777766554433

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=93.17  E-value=0.21  Score=28.60  Aligned_cols=31  Identities=10%  Similarity=0.125  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 008276          470 IWGSLVAACCLYSNMDIGILAADHIFHLAPN  500 (571)
Q Consensus       470 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  500 (571)
                      +|..+...+...|++++|...|+++++++|+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4555666666777777777777777776663

...

>PRK09687 putative lyase; Provisional

Probab=93.09  E-value=7.3  Score=36.04  Aligned_cols=75  Identities=13%  Similarity=0.028  Sum_probs=39.8

Q ss_pred             CCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHH
Q 008276          261 NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENAL  340 (571)
Q Consensus       261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  340 (571)
                      .++..+-...+.++.+.|+ ..|+..+-+..+.+.     .....+.++...|+. ++...+..+.+..  +|..+-...
T Consensus       203 D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a  273 (280)
T PRK09687        203 DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKA  273 (280)
T ss_pred             CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHH
Confidence            3444555555666666665 445555555554321     233556666677764 4666666666532  355554444


Q ss_pred             HHHH
Q 008276          341 VDMY  344 (571)
Q Consensus       341 ~~~~  344 (571)
                      +.++
T Consensus       274 ~~a~  277 (280)
T PRK09687        274 IDKL  277 (280)
T ss_pred             HHHH
Confidence            4444

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.06  E-value=2.3  Score=36.05  Aligned_cols=89  Identities=18%  Similarity=0.113  Sum_probs=48.9

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHH
Q 008276          374 AYGMSGQGYDAVALFSKMLMSGLCPDS-----IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI-EHFACLVDLLG  447 (571)
Q Consensus       374 ~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~  447 (571)
                      -+...|++++|..-|...++. +++..     ..|..-..++.+.+.++.|+.-..+.++.   .|+. ....--..+|.
T Consensus       104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel---~pty~kAl~RRAeaye  179 (271)
T KOG4234|consen  104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL---NPTYEKALERRAEAYE  179 (271)
T ss_pred             HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---CchhHHHHHHHHHHHH
Confidence            455667777777777777664 33322     13333444556666666666666555542   2322 22223345666


Q ss_pred             hcCCHHHHHHHHHhC-CCCC
Q 008276          448 RAGKVEEAYDLIKQM-PMEP  466 (571)
Q Consensus       448 ~~g~~~~A~~~~~~~-~~~p  466 (571)
                      +...+++|++-|+++ ...|
T Consensus       180 k~ek~eealeDyKki~E~dP  199 (271)
T KOG4234|consen  180 KMEKYEEALEDYKKILESDP  199 (271)
T ss_pred             hhhhHHHHHHHHHHHHHhCc
Confidence            666677777666666 3344

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.03  E-value=5.7  Score=38.29  Aligned_cols=69  Identities=9%  Similarity=0.139  Sum_probs=57.7

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008276          466 PNERIWGSLVAACCLYSNMDIGILAADHIFHLA----PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK  534 (571)
Q Consensus       466 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  534 (571)
                      ....+|..++..+.+.|.++.|...+.++...+    +..+.+...-+..+...|+..+|...+++..+..+.
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~  216 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS  216 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence            356688999999999999999999999998865    225667788889999999999999999988874433

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.92  E-value=0.94  Score=37.05  Aligned_cols=95  Identities=17%  Similarity=0.116  Sum_probs=64.9

Q ss_pred             HHHHHHHHHH---HhcCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 008276          437 EHFACLVDLL---GRAGKVEEAYDLIKQM-PMEPNERIWGSL-VAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI  511 (571)
Q Consensus       437 ~~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  511 (571)
                      .+.+.|++.+   .+.++.+++..++..+ -.+|.......+ ...+...|++.+|+.+++.+.+..|..+..-..++.+
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C   87 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC   87 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            3444555543   5678999999999988 456654444332 3346689999999999999888888777777777777


Q ss_pred             HHhcCCHHHHHHHHHHHHhCC
Q 008276          512 YAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       512 ~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      +...|+. +=..+-+++.+.+
T Consensus        88 L~~~~D~-~Wr~~A~evle~~  107 (160)
T PF09613_consen   88 LYALGDP-SWRRYADEVLESG  107 (160)
T ss_pred             HHHcCCh-HHHHHHHHHHhcC
Confidence            7666653 3344455566665

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.79  E-value=8.1  Score=35.79  Aligned_cols=18  Identities=11%  Similarity=-0.027  Sum_probs=13.3

Q ss_pred             HHcCCchHHHHHHHHHHH
Q 008276          275 ANNSMPAEAVDLYLQMEV  292 (571)
Q Consensus       275 ~~~g~~~~A~~~~~~m~~  292 (571)
                      .+.|+.+.|..++.+...
T Consensus         4 ~~~~~~~~A~~~~~K~~~   21 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKD   21 (278)
T ss_pred             hhhCCHHHHHHHHHHhhh
Confidence            356788888888877754

It is also involved in sporulation [].

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=92.72  E-value=0.89  Score=36.50  Aligned_cols=84  Identities=12%  Similarity=0.016  Sum_probs=51.9

Q ss_pred             hcCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 008276          448 RAGKVEEAYDLIKQM-PMEPNERIWGSL-VAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVR  525 (571)
Q Consensus       448 ~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  525 (571)
                      ..++.+++..+++.+ -+.|+..-...+ ...+...|++++|+.+++.+.+..+..+..-..++.++.-.|+.+ =..+-
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~-Wr~~A  100 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE-WHVHA  100 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH-HHHHH
Confidence            477888888888877 444543322222 334567888888888888888777766656666666666666532 22334


Q ss_pred             HHHHhCC
Q 008276          526 KFMNSKG  532 (571)
Q Consensus       526 ~~m~~~~  532 (571)
                      .++.+.+
T Consensus       101 ~~~le~~  107 (153)
T TIGR02561       101 DEVLARD  107 (153)
T ss_pred             HHHHHhC
Confidence            4444454

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=92.68  E-value=0.26  Score=30.42  Aligned_cols=31  Identities=13%  Similarity=0.250  Sum_probs=27.9

Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          502 SGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       502 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      +.++..++.+|.+.|++++|.+++++..+..
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~   31 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALD   31 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            3578899999999999999999999998765

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.57  E-value=0.52  Score=42.65  Aligned_cols=102  Identities=14%  Similarity=0.110  Sum_probs=79.1

Q ss_pred             hhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC-C------ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 008276           57 NQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN-K------NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPD  129 (571)
Q Consensus        57 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~  129 (571)
                      ..|.+.+..+...++..-....+++++...+-.+.. |      +... ...++.+ -.-++++++.++..-.+.|+-||
T Consensus        57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~d  134 (418)
T KOG4570|consen   57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPD  134 (418)
T ss_pred             hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccc
Confidence            456777778888888888888899999888766654 2      2211 1223333 33478899999999999999999


Q ss_pred             cccHHHHHHHhhcCCChHHHHHHHHHHHHhC
Q 008276          130 CYTYPCVLKACSGSNSLLVGLQIHCSVVKVG  160 (571)
Q Consensus       130 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g  160 (571)
                      .++++.+|+.+.+.+++..|.++.-+|....
T Consensus       135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988888765

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.12  E-value=2.5  Score=35.87  Aligned_cols=96  Identities=13%  Similarity=0.031  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHH--HH
Q 008276          367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI--AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA--CL  442 (571)
Q Consensus       367 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l  442 (571)
                      .+..+...|++.|+.+.|.+.|.++.+.-..+...  .+..+++.....+++..+...+.++........|...-+  ..
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            46677888888899999999998888865555443  566677788888888888888877765411111211111  11


Q ss_pred             H--HHHHhcCCHHHHHHHHHhC
Q 008276          443 V--DLLGRAGKVEEAYDLIKQM  462 (571)
Q Consensus       443 ~--~~~~~~g~~~~A~~~~~~~  462 (571)
                      .  -.+...+++.+|.+.|-..
T Consensus       118 ~~gL~~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  118 YEGLANLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHHHHHhchHHHHHHHHHcc
Confidence            1  1223467888888887776

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.11  E-value=18  Score=38.08  Aligned_cols=144  Identities=10%  Similarity=-0.008  Sum_probs=78.9

Q ss_pred             HHHHHhhcCCChHHHHHHHcccCCCChh---hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCC
Q 008276           69 KLMRTYGACGQMVDTRHVFDEITNKNVV---FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS  145 (571)
Q Consensus        69 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~  145 (571)
                      .-+..+.+..-++.|..+-+.-..+...   ....-..-+.+.|++++|..-|-+-... +.|     ..+|.-+.....
T Consensus       339 ~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~  412 (933)
T KOG2114|consen  339 TKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQR  412 (933)
T ss_pred             HHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHH
Confidence            3445555556666666655443322111   1222334456678888887776655432 222     224555555566


Q ss_pred             hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCc-hhHHHHHHHHHhCCCchHHHHHH
Q 008276          146 LLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDV-VTWNSMVAGYAQNGRFDEALDVC  219 (571)
Q Consensus       146 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~  219 (571)
                      ...-..+++.+.+.|+. +...-..|+.+|.+.++.+.-.++.+...+-.. .-....+..+.+.+-.++|..+-
T Consensus       413 IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA  486 (933)
T KOG2114|consen  413 IKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLA  486 (933)
T ss_pred             HHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHH
Confidence            66666777777777754 333345677888888887777777766552111 11334445555555555554443

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=91.72  E-value=3  Score=40.35  Aligned_cols=127  Identities=15%  Similarity=0.094  Sum_probs=63.9

Q ss_pred             HHhcCChHHHHHHHHH-HHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 008276          375 YGMSGQGYDAVALFSK-MLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE  453 (571)
Q Consensus       375 ~~~~~~~~~a~~~~~~-m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  453 (571)
                      -...|+...|-+-+.. ++...-.|+......  ..+...|+++.+...+.....  -+.....+..++++.....|+++
T Consensus       299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~  374 (831)
T PRK15180        299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWR  374 (831)
T ss_pred             HhhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHH
Confidence            3345565555443333 333223333333222  234556666666666655543  23334455566666666666666


Q ss_pred             HHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 008276          454 EAYDLIKQM-PME-PNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY  505 (571)
Q Consensus       454 ~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  505 (571)
                      +|...-+.| +.+ .++.............|-++++...++++..++|+...-|
T Consensus       375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~  428 (831)
T PRK15180        375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW  428 (831)
T ss_pred             HHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence            666666655 211 1333333333334445666666666666666665443333

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=91.70  E-value=0.49  Score=43.33  Aligned_cols=100  Identities=10%  Similarity=0.006  Sum_probs=71.1

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 008276          406 VLSACSHAGLLEEGRYYFKIMTEQYKLVP-RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYS  482 (571)
Q Consensus       406 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g  482 (571)
                      -..-|.++|.+++|+.+|.....   ..| ++.++..-..+|.+..++..|+.-.... .+.- =...|..-+.+-...|
T Consensus       103 ~GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  103 RGNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             hhhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            35568899999999999998774   345 7788888899999999998887766554 2111 1123333344444578


Q ss_pred             CHHHHHHHHHHHHhhCCCCchhHHHH
Q 008276          483 NMDIGILAADHIFHLAPNQSGYYVLL  508 (571)
Q Consensus       483 ~~~~A~~~~~~~~~~~p~~~~~~~~l  508 (571)
                      +..+|.+-++.++++.|.+...--.+
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~ELkK~~  205 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIELKKSL  205 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHHHHHH
Confidence            88899999999999999865544333

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.70  E-value=7.5  Score=33.02  Aligned_cols=87  Identities=13%  Similarity=-0.000  Sum_probs=43.2

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhc
Q 008276          408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF-----ACLVDLLGRAGKVEEAYDLIKQMPME-PNERIWGSLVAACCLY  481 (571)
Q Consensus       408 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~  481 (571)
                      ..+...+++++|...++.....   +.| ..+     --|.+.....|.+|+|+..++...-+ -.......-...+...
T Consensus        97 k~~ve~~~~d~A~aqL~~~l~~---t~D-e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~k  172 (207)
T COG2976          97 KAEVEANNLDKAEAQLKQALAQ---TKD-ENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAK  172 (207)
T ss_pred             HHHHhhccHHHHHHHHHHHHcc---chh-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHc
Confidence            3455566666666666655432   112 112     22344455566666666666655211 1122222233445566


Q ss_pred             CCHHHHHHHHHHHHhhC
Q 008276          482 SNMDIGILAADHIFHLA  498 (571)
Q Consensus       482 g~~~~A~~~~~~~~~~~  498 (571)
                      |+-++|...|+++++.+
T Consensus       173 g~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         173 GDKQEARAAYEKALESD  189 (207)
T ss_pred             CchHHHHHHHHHHHHcc
Confidence            66666666666666554

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=91.32  E-value=7.6  Score=32.34  Aligned_cols=134  Identities=9%  Similarity=0.110  Sum_probs=68.1

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHhC
Q 008276          385 VALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG--KVEEAYDLIKQM  462 (571)
Q Consensus       385 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~  462 (571)
                      .++++.+.+.+++|+...+..+++.+.+.|.+.....+++.     ++-+|.......+-.+....  -..-|++++.++
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-----~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL   88 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-----HVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL   88 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-----cccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence            44555666667777777777777777777776554444322     33344433322222222111  134455555555


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276          463 PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       463 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                      +.     .+..++..+...|++-+|+++.+.....+...   ...+.++-.+.++...-..+++-..++
T Consensus        89 ~~-----~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~---~~~fLeAA~~~~D~~lf~~V~~ff~~~  149 (167)
T PF07035_consen   89 GT-----AYEEIIEVLLSKGQVLEALRYARQYHKVDSVP---ARKFLEAAANSNDDQLFYAVFRFFEER  149 (167)
T ss_pred             hh-----hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCC---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            31     24445566667777777777776653332111   123334444455544444444444443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.17  E-value=0.47  Score=27.02  Aligned_cols=29  Identities=10%  Similarity=0.111  Sum_probs=25.0

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276          503 GYYVLLSNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       503 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                      .+|..++.++...|++++|++.+++..+.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            47889999999999999999999988754

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=90.41  E-value=4.1  Score=33.47  Aligned_cols=83  Identities=13%  Similarity=0.155  Sum_probs=53.8

Q ss_pred             HHHHHHHHH---hhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 008276          401 IAFVSVLSA---CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIWGSLVA  476 (571)
Q Consensus       401 ~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~  476 (571)
                      .+...|+..   -...++.+++..+++.+.--..-.+...++  -...+...|++.+|+.+|+++ ...|....-..|+.
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~--~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA   85 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLF--DGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA   85 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHH--HHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence            344444443   457789999999999997532222333333  345568899999999999999 43455555556666


Q ss_pred             HHHh-cCCHH
Q 008276          477 ACCL-YSNMD  485 (571)
Q Consensus       477 ~~~~-~g~~~  485 (571)
                      .|.. .||.+
T Consensus        86 ~CL~~~~D~~   95 (160)
T PF09613_consen   86 LCLYALGDPS   95 (160)
T ss_pred             HHHHHcCChH
Confidence            6554 44443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.41  E-value=0.68  Score=26.41  Aligned_cols=27  Identities=19%  Similarity=0.277  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008276          367 SWTSMISAYGMSGQGYDAVALFSKMLM  393 (571)
Q Consensus       367 ~~~~li~~~~~~~~~~~a~~~~~~m~~  393 (571)
                      +|..+...|...|++++|+..|++.++
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            456666666666777777777666666

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=90.35  E-value=0.67  Score=26.10  Aligned_cols=24  Identities=13%  Similarity=0.106  Sum_probs=11.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCC
Q 008276          476 AACCLYSNMDIGILAADHIFHLAP  499 (571)
Q Consensus       476 ~~~~~~g~~~~A~~~~~~~~~~~p  499 (571)
                      .++.+.|++++|...|+++++..|
T Consensus         8 ~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    8 RCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHccCHHHHHHHHHHHHHHCc
Confidence            334444445555555554444444

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.12  E-value=3.4  Score=35.09  Aligned_cols=63  Identities=13%  Similarity=0.017  Sum_probs=48.7

Q ss_pred             hhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHhccCCchHHHHHHHHHHHH
Q 008276          265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA--ISVASVLPACGDLSALLLGRKIHRYVER  327 (571)
Q Consensus       265 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~  327 (571)
                      ..+..+...|.+.|+.+.|++.|.++++....+..  ..+..++......+++..+......+..
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            46778899999999999999999999887544443  4456667777778888888877776664

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=90.07  E-value=34  Score=37.70  Aligned_cols=80  Identities=16%  Similarity=0.130  Sum_probs=40.7

Q ss_pred             HHHHHHcCCchHHHHHHHHHHHCCCCCCHH--HHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 008276          271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAI--SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG  348 (571)
Q Consensus       271 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  348 (571)
                      +.+|...|+|.+|+.+-.++..   ..+..  +-..|...+...++.-+|-++..+....   |     ...+..|++..
T Consensus       972 l~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~ 1040 (1265)
T KOG1920|consen  972 LKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAK 1040 (1265)
T ss_pred             HHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHh
Confidence            4556666677777666665532   11211  1134455555666666666655544422   1     12334455555


Q ss_pred             CHHHHHHHHhhCC
Q 008276          349 SLTEARTVFDQMR  361 (571)
Q Consensus       349 ~~~~a~~~~~~~~  361 (571)
                      .+++|..+-....
T Consensus      1041 ~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1041 EWEEALRVASKAK 1053 (1265)
T ss_pred             HHHHHHHHHHhcc
Confidence            6666666554444

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.92  E-value=0.53  Score=25.04  Aligned_cols=24  Identities=13%  Similarity=0.152  Sum_probs=18.2

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHH
Q 008276          503 GYYVLLSNIYAKAGRWGDVKRVRK  526 (571)
Q Consensus       503 ~~~~~l~~~~~~~g~~~~A~~~~~  526 (571)
                      .+...++.++...|+.++|..+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            356677788888888888887765

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.67  E-value=13  Score=32.52  Aligned_cols=20  Identities=5%  Similarity=-0.001  Sum_probs=12.9

Q ss_pred             HhcCCHHHHHHHHHHHHhhC
Q 008276          479 CLYSNMDIGILAADHIFHLA  498 (571)
Q Consensus       479 ~~~g~~~~A~~~~~~~~~~~  498 (571)
                      ...+++.+|+.+|+++....
T Consensus       165 a~leqY~~Ai~iyeqva~~s  184 (288)
T KOG1586|consen  165 AQLEQYSKAIDIYEQVARSS  184 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            34666777777777666544

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=89.66  E-value=0.86  Score=27.39  Aligned_cols=27  Identities=7%  Similarity=0.048  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          470 IWGSLVAACCLYSNMDIGILAADHIFH  496 (571)
Q Consensus       470 ~~~~l~~~~~~~g~~~~A~~~~~~~~~  496 (571)
                      +++.+...|...|++++|+.+++++.+
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            344455555555555555555555444

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=89.27  E-value=1.4  Score=40.51  Aligned_cols=93  Identities=12%  Similarity=0.123  Sum_probs=62.6

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 008276          372 ISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG  450 (571)
Q Consensus       372 i~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  450 (571)
                      ..-|.++|.+++|+..|...+.  +.| |..++..-..+|.+...+..|..-........  ..-...|.--+.+-...|
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESLG  179 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHHh
Confidence            3469999999999999999888  566 88899889999999999998887776665420  011122333333333445


Q ss_pred             CHHHHHHHHHhC-CCCCCH
Q 008276          451 KVEEAYDLIKQM-PMEPNE  468 (571)
Q Consensus       451 ~~~~A~~~~~~~-~~~p~~  468 (571)
                      ...+|.+-++.. .++|+.
T Consensus       180 ~~~EAKkD~E~vL~LEP~~  198 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKN  198 (536)
T ss_pred             hHHHHHHhHHHHHhhCccc
Confidence            555555555544 566763

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=89.23  E-value=9  Score=32.85  Aligned_cols=76  Identities=14%  Similarity=0.035  Sum_probs=54.6

Q ss_pred             HhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CCCchhHHHHHHHHHhcCCHHH
Q 008276          447 GRAGKVEEAYDLIKQMPMEP--NERIWGSLVAACCLYSNMDIGILAADHIFHLA----PNQSGYYVLLSNIYAKAGRWGD  520 (571)
Q Consensus       447 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~  520 (571)
                      .....-++|.+.|-++.-.|  +....-..+..|....|.++++.++-+++++.    ..|+.++..|+..+.+.|+++.
T Consensus       117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~  196 (203)
T PF11207_consen  117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ  196 (203)
T ss_pred             hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence            33434467777777772232  33344444555666889999999999999865    3368899999999999999998


Q ss_pred             HH
Q 008276          521 VK  522 (571)
Q Consensus       521 A~  522 (571)
                      |-
T Consensus       197 AY  198 (203)
T PF11207_consen  197 AY  198 (203)
T ss_pred             hh
Confidence            74

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.20  E-value=12  Score=31.17  Aligned_cols=126  Identities=14%  Similarity=0.081  Sum_probs=74.6

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHH-----HHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHH--
Q 008276          335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMI-----SAYGMSGQGYDAVALFSKMLMSGLCPDSI-AFVSV--  406 (571)
Q Consensus       335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li-----~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l--  406 (571)
                      ..|..-++ +.+.++.++|..-|..+.+.+...|-.|.     ....+.|+...|...|.+.-.....|-.. -...|  
T Consensus        60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra  138 (221)
T COG4649          60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA  138 (221)
T ss_pred             HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence            34444333 35567777777777777765544444433     23556777777787777776643333222 11111  


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276          407 LSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM  462 (571)
Q Consensus       407 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  462 (571)
                      .-.+...|.++....-.+-+... +.+.....-..|.-+-.+.|++.+|.+.|..+
T Consensus       139 a~lLvD~gsy~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qi  193 (221)
T COG4649         139 AYLLVDNGSYDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQI  193 (221)
T ss_pred             HHHHhccccHHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence            12345677777777776666543 43444455566666777778888888777776

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=89.17  E-value=5.7  Score=33.24  Aligned_cols=66  Identities=14%  Similarity=0.131  Sum_probs=38.3

Q ss_pred             CCCCC-HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          463 PMEPN-ERIWGSLVAACCLYS-----------NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       463 ~~~p~-~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      .++|+ ..++..+..++...+           -+++|...|+++...+|.+......|-.+       ..|-++..++..
T Consensus        63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~  135 (186)
T PF06552_consen   63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHK  135 (186)
T ss_dssp             HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHH
T ss_pred             hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHH
Confidence            45564 345555655554322           25677788888888999887666666443       457777777766


Q ss_pred             CCCCC
Q 008276          531 KGIKK  535 (571)
Q Consensus       531 ~~~~~  535 (571)
                      .+...
T Consensus       136 ~~~~~  140 (186)
T PF06552_consen  136 QGLGQ  140 (186)
T ss_dssp             SSS--
T ss_pred             HHhhh
Confidence            65443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=89.12  E-value=3.3  Score=30.39  Aligned_cols=63  Identities=11%  Similarity=0.260  Sum_probs=47.9

Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008276          380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD  444 (571)
Q Consensus       380 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  444 (571)
                      +.-++.+-++.+....+.|++......+++|.+.+++..|.++++.++.+.+.  +...|..++.
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq   84 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ   84 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence            44566777777778888999999999999999999999999999988764232  3445555544

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.09  E-value=15  Score=32.41  Aligned_cols=89  Identities=11%  Similarity=0.057  Sum_probs=47.9

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHH
Q 008276          371 MISAYGMSGQGYDAVALFSKMLM----SGLCPDS-IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL--VPRIEHFACLV  443 (571)
Q Consensus       371 li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~  443 (571)
                      .-..+.+..++++|-..+.+-..    ..--++. ..|...|-.+....++..|.++++.-.+..++  +.+..+...|+
T Consensus       156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL  235 (308)
T KOG1585|consen  156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL  235 (308)
T ss_pred             hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence            33455566666665554433211    1112222 23555555666677888888888774433222  22345666677


Q ss_pred             HHHHhcCCHHHHHHHHH
Q 008276          444 DLLGRAGKVEEAYDLIK  460 (571)
Q Consensus       444 ~~~~~~g~~~~A~~~~~  460 (571)
                      .+| ..|+.+++..++.
T Consensus       236 ~ay-d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  236 TAY-DEGDIEEIKKVLS  251 (308)
T ss_pred             HHh-ccCCHHHHHHHHc
Confidence            666 4677777766654

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.79  E-value=17  Score=32.54  Aligned_cols=260  Identities=16%  Similarity=0.166  Sum_probs=135.7

Q ss_pred             CCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCC----C---ChhhHHHHHHHHHHcCCchHHHHHHHHHHHC---C
Q 008276          225 LRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDN----K---NLVSWNVMIAVYANNSMPAEAVDLYLQMEVH---G  294 (571)
Q Consensus       225 ~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g  294 (571)
                      .+-.||...-+....+-+-..+ +.+.|..-|.++.+    .   ...+...++..+.+.+++++.+..|.+|+..   .
T Consensus        20 s~sEpdVDlENQYYnsK~l~e~-~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA   98 (440)
T KOG1464|consen   20 SNSEPDVDLENQYYNSKGLKED-EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA   98 (440)
T ss_pred             cCCCCCcchHhhhhcccccccc-CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            3445665544443332222211 35666666655542    1   2234456788888888888888888887532   1


Q ss_pred             C--CCCHHHHHHHHHHhccCCchHHHHHHHHHHHHc-----CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----
Q 008276          295 I--EPNAISVASVLPACGDLSALLLGRKIHRYVERK-----KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC-----  362 (571)
Q Consensus       295 ~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----  362 (571)
                      +  .-+....+.++.-.....+.+....+|+.-.+.     +-..--.+-..|...|...+++.+..++++++..     
T Consensus        99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e  178 (440)
T KOG1464|consen   99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE  178 (440)
T ss_pred             HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence            1  123455666666555566666666665543321     1111122334566677777777777777776642     


Q ss_pred             ---C-------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHh-----hcCCCHHHHHHHHHHH
Q 008276          363 ---Q-------DVVSWTSMISAYGMSGQGYDAVALFSKMLMS-GLCPDSIAFVSVLSAC-----SHAGLLEEGRYYFKIM  426 (571)
Q Consensus       363 ---~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~  426 (571)
                         .       =...|..=|+.|....+-.+...+|++...- .--|.+... .+++-|     .+.|.+++|..-|-++
T Consensus       179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEA  257 (440)
T KOG1464|consen  179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEA  257 (440)
T ss_pred             cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHH
Confidence               1       1234666677777777777777777776542 233444443 344444     3567777776544444


Q ss_pred             HHhcCCCCCH--H---HHHHHHHHHHhcCCHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008276          427 TEQYKLVPRI--E---HFACLVDLLGRAGKVEEAYDLIKQM---PM--EPNERIWGSLVAACCLYSNMDIGILAAD  492 (571)
Q Consensus       427 ~~~~~~~~~~--~---~~~~l~~~~~~~g~~~~A~~~~~~~---~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~  492 (571)
                      .+.+.-..++  .   -|..|..++.+.|     ..=|+.-   +.  .|...+...++.+|.. ++..+-++++.
T Consensus       258 FKNYDEsGspRRttCLKYLVLANMLmkS~-----iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~  327 (440)
T KOG1464|consen  258 FKNYDESGSPRRTTCLKYLVLANMLMKSG-----INPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILK  327 (440)
T ss_pred             HhcccccCCcchhHHHHHHHHHHHHHHcC-----CCCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence            4433222222  1   1333334443322     1122211   22  2344556677777743 45544444444

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.69  E-value=14  Score=31.44  Aligned_cols=91  Identities=13%  Similarity=0.020  Sum_probs=61.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 008276          441 CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWG-----SLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA  515 (571)
Q Consensus       441 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  515 (571)
                      .+...+..+|++++|+.-++..--.|....+.     .|.+.....|++++|+..++.....+= .+.....-++++...
T Consensus        94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k  172 (207)
T COG2976          94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAK  172 (207)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence            34566778888888888888652233222332     344566778888888888776544321 223455677888888


Q ss_pred             CCHHHHHHHHHHHHhCC
Q 008276          516 GRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       516 g~~~~A~~~~~~m~~~~  532 (571)
                      |+.++|+.-|++..+.+
T Consensus       173 g~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         173 GDKQEARAAYEKALESD  189 (207)
T ss_pred             CchHHHHHHHHHHHHcc
Confidence            88888888888887776

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=88.28  E-value=0.79  Score=25.78  Aligned_cols=29  Identities=14%  Similarity=0.126  Sum_probs=25.5

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          504 YYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       504 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      ++..++.++.+.|++++|.++++++.+.-
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~   30 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY   30 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            56788999999999999999999998653

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=88.27  E-value=4  Score=39.54  Aligned_cols=151  Identities=12%  Similarity=0.076  Sum_probs=92.4

Q ss_pred             HHHhcCCHHHHHH-HHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHH
Q 008276          343 MYAKCGSLTEART-VFDQMRC--QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG  419 (571)
Q Consensus       343 ~~~~~~~~~~a~~-~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a  419 (571)
                      --...|++..|-+ ++..+..  .++.........+...|+++.+...+...... +.....+...+++...+.|++++|
T Consensus       298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a  376 (831)
T PRK15180        298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA  376 (831)
T ss_pred             HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence            3345677766644 4444432  23333333334456789999999998876654 455667888899999999999999


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          420 RYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PME-PNERIWGSLVAACCLYSNMDIGILAADHIFH  496 (571)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  496 (571)
                      ...-..|..+ .+ .++.....-.-..-..|-++++.-.|++. .+. |...-|..++..-.-.++...--+.|...++
T Consensus       377 ~s~a~~~l~~-ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~  453 (831)
T PRK15180        377 LSTAEMMLSN-EI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGNAFSEAFHAGIQ  453 (831)
T ss_pred             HHHHHHHhcc-cc-CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcchHHHHHHhhhh
Confidence            9999888764 33 23333333333344567789999999887 333 3444555555543333343333344444443

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=88.23  E-value=14  Score=30.83  Aligned_cols=134  Identities=13%  Similarity=0.114  Sum_probs=70.1

Q ss_pred             HHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 008276          151 QIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD  230 (571)
Q Consensus       151 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  230 (571)
                      ++++.+.+.+++++...+..+++.+.+.|++.....++..-.-+|.......+-.+.  +....+.++=-+|        
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDM--------   84 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDM--------   84 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHH--------
Confidence            445555566777777777777777777777766666655433333332222221111  1222222222222        


Q ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 008276          231 ADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG  310 (571)
Q Consensus       231 ~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~  310 (571)
                                               +.++.    ..+..++..+...|++-+|+.+.++..... .++   ...++.+..
T Consensus        85 -------------------------LkRL~----~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~---~~~fLeAA~  131 (167)
T PF07035_consen   85 -------------------------LKRLG----TAYEEIIEVLLSKGQVLEALRYARQYHKVD-SVP---ARKFLEAAA  131 (167)
T ss_pred             -------------------------HHHhh----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCC---HHHHHHHHH
Confidence                                     22221    135566778888899999988887653221 222   234555555


Q ss_pred             cCCchHHHHHHHHHHHH
Q 008276          311 DLSALLLGRKIHRYVER  327 (571)
Q Consensus       311 ~~~~~~~a~~~~~~~~~  327 (571)
                      +.+|...-..+++-..+
T Consensus       132 ~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen  132 NSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            55555444444444443

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=88.19  E-value=4.2  Score=30.21  Aligned_cols=61  Identities=10%  Similarity=0.180  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008276          382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD  444 (571)
Q Consensus       382 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  444 (571)
                      -+..+-+..+....+.|++......+++|.+.+++..|.++++.++.+.+..  ...|..+++
T Consensus        27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq   87 (108)
T PF02284_consen   27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred             HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence            3566667777777889999999999999999999999999999998764433  225655554

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=88.19  E-value=5  Score=36.60  Aligned_cols=62  Identities=11%  Similarity=0.134  Sum_probs=37.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276          366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE  428 (571)
Q Consensus       366 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  428 (571)
                      .++..++..+...|+++.+.+.++++... -+-+...|..++.+|...|+...|+..|+.+.+
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            34555566666666666666666666663 122555666666666666666666666665543

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=87.94  E-value=38  Score=35.55  Aligned_cols=88  Identities=15%  Similarity=0.130  Sum_probs=44.6

Q ss_pred             HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCC-CCChhhHHHHHHHHHH---cC
Q 008276          203 VAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLD-NKNLVSWNVMIAVYAN---NS  278 (571)
Q Consensus       203 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~---~g  278 (571)
                      ...+.-.|++|.|.+.+-+  ..+...|.+++...+..+.-........ ..++.... .+....+..||..|.+   ..
T Consensus       265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~-~~lls~~~~~~~~ln~arLI~~Y~~~F~~t  341 (613)
T PF04097_consen  265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS-APLLSVDPGDPPPLNFARLIGQYTRSFEIT  341 (613)
T ss_dssp             HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT-------------------------HHHHHHHHHHTTTTT
T ss_pred             HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc-cceeeecCCCCCCcCHHHHHHHHHHHHhcc
Confidence            3455668999999998876  3345677888888877665443322211 11111111 1222557778888876   35


Q ss_pred             CchHHHHHHHHHHHC
Q 008276          279 MPAEAVDLYLQMEVH  293 (571)
Q Consensus       279 ~~~~A~~~~~~m~~~  293 (571)
                      +..+|+++|--+...
T Consensus       342 d~~~Al~Y~~li~~~  356 (613)
T PF04097_consen  342 DPREALQYLYLICLF  356 (613)
T ss_dssp             -HHHHHHHHHGGGGS
T ss_pred             CHHHHHHHHHHHHHc
Confidence            778888888776553

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=87.65  E-value=1.4  Score=24.99  Aligned_cols=29  Identities=17%  Similarity=0.194  Sum_probs=25.7

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276          503 GYYVLLSNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       503 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                      .+|..++..|...|++++|...+++..+.
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            46889999999999999999999988653

...

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=87.56  E-value=1.2  Score=26.71  Aligned_cols=28  Identities=18%  Similarity=0.202  Sum_probs=24.2

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          503 GYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       503 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      .++..++.+|...|++++|..++++..+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4688999999999999999999998864

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=87.52  E-value=20  Score=37.21  Aligned_cols=185  Identities=18%  Similarity=0.226  Sum_probs=97.2

Q ss_pred             hhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHH----------HHHHHHHHhccCCchHHHHHHHHHHHHcCCCCCh
Q 008276          265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI----------SVASVLPACGDLSALLLGRKIHRYVERKKLQPNL  334 (571)
Q Consensus       265 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  334 (571)
                      .+-..++-.|....+++..+++.+.+..   -||..          .|.-.++--.+-|+-+.|..+.-.+.+..-+..+
T Consensus       202 d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap  278 (1226)
T KOG4279|consen  202 DTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP  278 (1226)
T ss_pred             HHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence            3445566666777778888888777765   23321          1222233334456667776666555553222222


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHhh
Q 008276          335 RLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA---FVSVLSACS  411 (571)
Q Consensus       335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~l~~~~~  411 (571)
                      .       .||-+|++      |+.|-         +-..|...+..+.|++.|++..+  +.|+..+   +..|+.+-.
T Consensus       279 D-------m~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG  334 (1226)
T KOG4279|consen  279 D-------MYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAG  334 (1226)
T ss_pred             c-------eeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhh
Confidence            1       22333322      11111         11123345556778888888877  6776653   333333221


Q ss_pred             cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008276          412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAA  491 (571)
Q Consensus       412 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  491 (571)
                      +  .++...++-. +    |        -.|-..+.+.|.++...++|+-.          ..+.+-.-.+|+.+|.+..
T Consensus       335 ~--~Fens~Elq~-I----g--------mkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAa  389 (1226)
T KOG4279|consen  335 E--HFENSLELQQ-I----G--------MKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAA  389 (1226)
T ss_pred             h--hccchHHHHH-H----H--------HHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHH
Confidence            1  1222222111 1    1        12334556778777777776543          2334445567888888888


Q ss_pred             HHHHhhCCCC
Q 008276          492 DHIFHLAPNQ  501 (571)
Q Consensus       492 ~~~~~~~p~~  501 (571)
                      +.+.++.|+.
T Consensus       390 e~mfKLk~P~  399 (1226)
T KOG4279|consen  390 EMMFKLKPPV  399 (1226)
T ss_pred             HHHhccCCce
Confidence            8888888764

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=87.29  E-value=33  Score=34.04  Aligned_cols=92  Identities=15%  Similarity=0.157  Sum_probs=40.3

Q ss_pred             CHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHH
Q 008276          298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISA  374 (571)
Q Consensus       298 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~  374 (571)
                      |.....+++..+.....+.-++.+-.+|...|  .+...+..++++|... ..++-..+|+++.+   .|++.-..|...
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~  141 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK  141 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence            34444445555555555555555555555443  2334444455555444 33444444443332   222222333333


Q ss_pred             HHhcCChHHHHHHHHHHHH
Q 008276          375 YGMSGQGYDAVALFSKMLM  393 (571)
Q Consensus       375 ~~~~~~~~~a~~~~~~m~~  393 (571)
                      |-+ ++...+..+|.++..
T Consensus       142 yEk-ik~sk~a~~f~Ka~y  159 (711)
T COG1747         142 YEK-IKKSKAAEFFGKALY  159 (711)
T ss_pred             HHH-hchhhHHHHHHHHHH
Confidence            332 444444445544443

>PRK11619 lytic murein transglycosylase; Provisional

Probab=87.14  E-value=43  Score=35.29  Aligned_cols=94  Identities=7%  Similarity=-0.173  Sum_probs=50.8

Q ss_pred             HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCCchhHHHHHHHHHhcCCHH
Q 008276          443 VDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA---PNQSGYYVLLSNIYAKAGRWG  519 (571)
Q Consensus       443 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~  519 (571)
                      +..+...|....|...+..+....+......+.......|.++.++....+....+   -..+..|...+..+.+.-..+
T Consensus       414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~  493 (644)
T PRK11619        414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP  493 (644)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence            44556677777777777666223444445555555566777777777665443311   112234555555555555555


Q ss_pred             HHHHHHHHHHhCCCCCC
Q 008276          520 DVKRVRKFMNSKGIKKM  536 (571)
Q Consensus       520 ~A~~~~~~m~~~~~~~~  536 (571)
                      .++-+---..|.++.|.
T Consensus       494 ~~lv~ai~rqES~f~p~  510 (644)
T PRK11619        494 QSYAMAIARQESAWNPK  510 (644)
T ss_pred             HHHHHHHHHHhcCCCCC
Confidence            55543333335555443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.98  E-value=1.4  Score=27.12  Aligned_cols=27  Identities=15%  Similarity=0.270  Sum_probs=22.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          506 VLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       506 ~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      ..++.+|...|+.+.|++++++....|
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            467889999999999999999988654

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=86.97  E-value=1.6  Score=28.13  Aligned_cols=35  Identities=11%  Similarity=0.137  Sum_probs=27.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 008276          473 SLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL  507 (571)
Q Consensus       473 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  507 (571)
                      .+.-++.+.|++++|.+..+.+++.+|++..+-..
T Consensus         6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L   40 (53)
T PF14853_consen    6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL   40 (53)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            35567789999999999999999999998765543

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=86.97  E-value=44  Score=35.18  Aligned_cols=50  Identities=10%  Similarity=-0.123  Sum_probs=28.7

Q ss_pred             HHHcCCchHHHHHHHHHHHCCC-CCC-----HHHHHHHHHH--hccCCchHHHHHHHH
Q 008276          274 YANNSMPAEAVDLYLQMEVHGI-EPN-----AISVASVLPA--CGDLSALLLGRKIHR  323 (571)
Q Consensus       274 ~~~~g~~~~A~~~~~~m~~~g~-~~~-----~~~~~~ll~~--~~~~~~~~~a~~~~~  323 (571)
                      .+-.+++..|...+..|....- .|+     ...+...+.+  +...|+.+.|...|.
T Consensus       371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            3456778888888888775321 111     1222222322  345578888888886

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=86.81  E-value=2.6  Score=36.27  Aligned_cols=62  Identities=13%  Similarity=0.184  Sum_probs=45.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 008276          440 ACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ  501 (571)
Q Consensus       440 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  501 (571)
                      +.-+..+.+.+.+++|+...+.- .-+| |..+-..++..++-.|++++|..-++-+-.+.|++
T Consensus         5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~   68 (273)
T COG4455           5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD   68 (273)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence            34456677788888888776654 5566 55666677788888888888888888888877754

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=86.44  E-value=0.99  Score=25.93  Aligned_cols=21  Identities=33%  Similarity=0.428  Sum_probs=10.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHH
Q 008276          435 RIEHFACLVDLLGRAGKVEEA  455 (571)
Q Consensus       435 ~~~~~~~l~~~~~~~g~~~~A  455 (571)
                      +...|+.+...|...|++++|
T Consensus        12 n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen   12 NAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             CHHHHHHHHHHHHHCcCHHhh
Confidence            344455555555555555544

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=86.19  E-value=3.3  Score=37.34  Aligned_cols=60  Identities=13%  Similarity=-0.019  Sum_probs=52.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          471 WGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       471 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      ++.....|..+|.+.+|.++-++++.++|-+...+..+...|...|+--.|...++++.+
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            445566788999999999999999999999999999999999999998888888888763

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=86.14  E-value=3.8  Score=30.10  Aligned_cols=51  Identities=10%  Similarity=0.017  Sum_probs=23.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHHHHhcCC
Q 008276          467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPN--QSGYYVLLSNIYAKAGR  517 (571)
Q Consensus       467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~  517 (571)
                      |....-.+...+...|++++|++.+-.+++.++.  +...-..++.++.-.|.
T Consensus        21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen   21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            3344444445555555555555555555554432  23444455555444444

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=86.00  E-value=43  Score=34.70  Aligned_cols=151  Identities=11%  Similarity=0.065  Sum_probs=70.4

Q ss_pred             hcCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHhhcC----C-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008276          377 MSGQGYDAVALFSKMLM-------SGLCPDSIAFVSVLSACSHA----G-LLEEGRYYFKIMTEQYKLVPRIEHFACLVD  444 (571)
Q Consensus       377 ~~~~~~~a~~~~~~m~~-------~g~~p~~~~~~~l~~~~~~~----~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  444 (571)
                      ..++.+.|+.+|+.+.+       .|   +......+..+|.+.    . +.+.|..++.+..+. + .|+...+...+.
T Consensus       261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~~~  335 (552)
T KOG1550|consen  261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-G-NPDAQYLLGVLY  335 (552)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-C-CchHHHHHHHHH
Confidence            33455555555555444       33   222333444444442    2 456667776666553 2 233332222222


Q ss_pred             HHHh-cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc-CCH
Q 008276          445 LLGR-AGKVEEAYDLIKQMPMEPNERIWGSLVAACC----LYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA-GRW  518 (571)
Q Consensus       445 ~~~~-~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~  518 (571)
                      .... ..+...|.++|......-....+-.+...|.    ...+.+.|...++++.+.++  +.+...+...+... +++
T Consensus       336 ~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~  413 (552)
T KOG1550|consen  336 ETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRY  413 (552)
T ss_pred             HcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccccc
Confidence            1111 1345667777766621222222211222111    34467777777777777763  22233333322221 677


Q ss_pred             HHHHHHHHHHHhCCCC
Q 008276          519 GDVKRVRKFMNSKGIK  534 (571)
Q Consensus       519 ~~A~~~~~~m~~~~~~  534 (571)
                      +.+.-.+..+.+.|.+
T Consensus       414 ~~~~~~~~~~a~~g~~  429 (552)
T KOG1550|consen  414 DTALALYLYLAELGYE  429 (552)
T ss_pred             cHHHHHHHHHHHhhhh
Confidence            7777666666666554

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.00  E-value=23  Score=35.79  Aligned_cols=25  Identities=20%  Similarity=0.131  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276          438 HFACLVDLLGRAGKVEEAYDLIKQM  462 (571)
Q Consensus       438 ~~~~l~~~~~~~g~~~~A~~~~~~~  462 (571)
                      -|..|.++..+.|++..|.+.|.+.
T Consensus       668 Kw~~Lg~~al~~~~l~lA~EC~~~a  692 (794)
T KOG0276|consen  668 KWRQLGDAALSAGELPLASECFLRA  692 (794)
T ss_pred             HHHHHHHHHhhcccchhHHHHHHhh
Confidence            3444555555555555554444443

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=85.88  E-value=0.5  Score=38.62  Aligned_cols=86  Identities=15%  Similarity=0.104  Sum_probs=63.2

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchH
Q 008276          135 CVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDE  214 (571)
Q Consensus       135 ~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  214 (571)
                      .++..+.+.+.+.....+++.+...+...+...++.++..|++.++.++..++++....   .-...++..|.+.|.+++
T Consensus        12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~   88 (143)
T PF00637_consen   12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE   88 (143)
T ss_dssp             CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence            36777778888888888899888877667788889999999999888888888874433   333456677777777777


Q ss_pred             HHHHHHHHH
Q 008276          215 ALDVCREME  223 (571)
Q Consensus       215 a~~~~~~m~  223 (571)
                      +.-++.++.
T Consensus        89 a~~Ly~~~~   97 (143)
T PF00637_consen   89 AVYLYSKLG   97 (143)
T ss_dssp             HHHHHHCCT
T ss_pred             HHHHHHHcc
Confidence            777776653

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=85.83  E-value=12  Score=27.73  Aligned_cols=87  Identities=11%  Similarity=-0.014  Sum_probs=60.4

Q ss_pred             CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHH
Q 008276          144 NSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREME  223 (571)
Q Consensus       144 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  223 (571)
                      ...++|..+-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||...|-+|...  +.|..++...-+.+|.
T Consensus        19 HcHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla   95 (115)
T TIGR02508        19 HCHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLA   95 (115)
T ss_pred             hHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHH
Confidence            3467777777777665422 222222334567889999999999999988999988776554  6777777777777777


Q ss_pred             HCCCCCCHHHH
Q 008276          224 SLRIKPDADTM  234 (571)
Q Consensus       224 ~~g~~p~~~t~  234 (571)
                      .+| .|....|
T Consensus        96 ~sg-~p~lq~F  105 (115)
T TIGR02508        96 ASG-DPRLQTF  105 (115)
T ss_pred             hCC-CHHHHHH
Confidence            765 4444444

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PRK10941 hypothetical protein; Provisional

Probab=85.73  E-value=5.8  Score=36.25  Aligned_cols=62  Identities=15%  Similarity=0.095  Sum_probs=47.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          471 WGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       471 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      .+.+-.+|.+.++++.|+...+.++.+.|+++.-+.-.+-+|.+.|.+..|..=++...+..
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~  245 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC  245 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence            45555667778888888888888888888888777777778888888888887777776554

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=85.47  E-value=5.7  Score=34.94  Aligned_cols=57  Identities=9%  Similarity=-0.091  Sum_probs=44.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008276          477 ACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI  533 (571)
Q Consensus       477 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  533 (571)
                      ++...|++-++++.-..++...|.+..+|+.-+.+....=+.++|..=|....+...
T Consensus       239 C~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp  295 (329)
T KOG0545|consen  239 CLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP  295 (329)
T ss_pred             HHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence            445677888888888888888888888888888888888788888877777765543

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.20  E-value=28  Score=31.27  Aligned_cols=126  Identities=10%  Similarity=-0.007  Sum_probs=74.3

Q ss_pred             ChhhHHHHHHHHHHcCCchHHHHHHHHHHH----C-CCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCC----CCC
Q 008276          263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEV----H-GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL----QPN  333 (571)
Q Consensus       263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~  333 (571)
                      +..+.|++++.-....+.+.-..+|+.-++    . +-+.--.|-..+...|...+.+....++++++....-    ..|
T Consensus       104 SEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD  183 (440)
T KOG1464|consen  104 SEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDD  183 (440)
T ss_pred             cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchh
Confidence            345667777766666666666666554322    1 1111123445667778888899999999998875321    111


Q ss_pred             -------hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhHHHHHH----HHHHhcCChHHHHHHH
Q 008276          334 -------LRLENALVDMYAKCGSLTEARTVFDQMRC-----QDVVSWTSMI----SAYGMSGQGYDAVALF  388 (571)
Q Consensus       334 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li----~~~~~~~~~~~a~~~~  388 (571)
                             ..+|..-++.|....+-.+-..++++...     |.+.....+-    ....+.|++++|..-|
T Consensus       184 ~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDF  254 (440)
T KOG1464|consen  184 QKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDF  254 (440)
T ss_pred             hhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHH
Confidence                   34566667777777777777777776542     4443332221    1245677888776433

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=84.96  E-value=2.4  Score=35.43  Aligned_cols=48  Identities=13%  Similarity=0.166  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC-----------HHHHHHHHHHHHhC
Q 008276          484 MDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR-----------WGDVKRVRKFMNSK  531 (571)
Q Consensus       484 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~  531 (571)
                      +++|+.-|++++.++|+...++..++.+|...+.           +++|.++|++..+.
T Consensus        51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~  109 (186)
T PF06552_consen   51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE  109 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc
Confidence            5577888888889999999999999999987653           45555555555443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=84.63  E-value=56  Score=34.33  Aligned_cols=86  Identities=14%  Similarity=0.016  Sum_probs=35.6

Q ss_pred             HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHh---
Q 008276          271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK-LQPNLRLENALVDMYAK---  346 (571)
Q Consensus       271 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~---  346 (571)
                      ...+.-.|+++.|++++..  ..+...+...+...+.-+.-..-.+...   ..+.... -.|..--+..||..|.+   
T Consensus       265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~  339 (613)
T PF04097_consen  265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE  339 (613)
T ss_dssp             HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred             HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence            3455567788888877765  2233455555555554443322211111   2222111 01111345566666665   


Q ss_pred             cCCHHHHHHHHhhCC
Q 008276          347 CGSLTEARTVFDQMR  361 (571)
Q Consensus       347 ~~~~~~a~~~~~~~~  361 (571)
                      ..++..|.++|--+.
T Consensus       340 ~td~~~Al~Y~~li~  354 (613)
T PF04097_consen  340 ITDPREALQYLYLIC  354 (613)
T ss_dssp             TT-HHHHHHHHHGGG
T ss_pred             ccCHHHHHHHHHHHH
Confidence            346777777766554

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=84.60  E-value=15  Score=29.80  Aligned_cols=78  Identities=10%  Similarity=0.213  Sum_probs=54.2

Q ss_pred             HHHHHHHHhhcCCChHHHHHHHcccCC---------CChhhHHHHHHHHHHcCC-hhHHHHHHHHHHhCCCCCCcccHHH
Q 008276           66 IGLKLMRTYGACGQMVDTRHVFDEITN---------KNVVFFNVLIRSYVNNYL-YYDALHVYKNMSVHGFDPDCYTYPC  135 (571)
Q Consensus        66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~~~  135 (571)
                      ..|.++.....-+++.....+++.+..         .+..+|+.++.+..+... ---+..+|..|.+.+.++++.-|..
T Consensus        41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~  120 (145)
T PF13762_consen   41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC  120 (145)
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            447777777777778877777776642         245567777777766555 3346677777777777777777877


Q ss_pred             HHHHhhcC
Q 008276          136 VLKACSGS  143 (571)
Q Consensus       136 li~~~~~~  143 (571)
                      +|.++.+.
T Consensus       121 li~~~l~g  128 (145)
T PF13762_consen  121 LIKAALRG  128 (145)
T ss_pred             HHHHHHcC
Confidence            88776654

>smart00028 TPR Tetratricopeptide repeats

Probab=84.55  E-value=2.3  Score=23.04  Aligned_cols=27  Identities=19%  Similarity=0.203  Sum_probs=12.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 008276          473 SLVAACCLYSNMDIGILAADHIFHLAP  499 (571)
Q Consensus       473 ~l~~~~~~~g~~~~A~~~~~~~~~~~p  499 (571)
                      .+...+...|+++.|...+++.++..|
T Consensus         6 ~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        6 NLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            334444444444444444444444433

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=84.48  E-value=27  Score=30.44  Aligned_cols=59  Identities=15%  Similarity=0.020  Sum_probs=37.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 008276          368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMT  427 (571)
Q Consensus       368 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  427 (571)
                      .+.-++.+.+.+...+++...++-++. -+.|..+-..+++.++-.|+|++|..-++..-
T Consensus         4 l~~t~seLL~~~sL~dai~~a~~qVka-kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a   62 (273)
T COG4455           4 LRDTISELLDDNSLQDAIGLARDQVKA-KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA   62 (273)
T ss_pred             hHHHHHHHHHhccHHHHHHHHHHHHhc-CCccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence            344556666777777777777766653 12244455666777777777777777666554

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=84.40  E-value=1e+02  Score=37.14  Aligned_cols=162  Identities=10%  Similarity=-0.009  Sum_probs=98.4

Q ss_pred             hHHHHHHhhCCChHHHHHHHHHHHHhhcCC-C-ChhHHHHHHHHhhcCCChHHHHHHHc-ccCCCChhhHHHHHHHHHHc
Q 008276           32 DACNDILDKYPDIKTLKKLHAQIIINQHLH-S-NPSIGLKLMRTYGACGQMVDTRHVFD-EITNKNVVFFNVLIRSYVNN  108 (571)
Q Consensus        32 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~li~~~~~~  108 (571)
                      .+++.+=-+++.+..|..-+++-. ....+ - ....+-.+...|+..+++|...-+.. ...+|+.   ..-|......
T Consensus      1387 ~tLa~aSfrc~~y~RalmylEs~~-~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1387 DTLARASFRCKAYARALMYLESHR-STEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEAS 1462 (2382)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhh
Confidence            355666667777777777777521 11111 1 12233344448888888888777766 3444433   3345566777


Q ss_pred             CChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhCCCHHHHHHH
Q 008276          109 YLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG-NGLVAMYGKCGCLKEARRV  187 (571)
Q Consensus       109 ~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~l~~~~~~~g~~~~A~~~  187 (571)
                      |++..|...|+.+.+.+ ++...+++-++......+.++...-..+-....- .+....+ +.=+.+-.+.++++.....
T Consensus      1463 g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred             ccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence            99999999999998864 3336778888888777888877776555544332 2222233 3334455777888877776


Q ss_pred             HccCCCCCchhHHHH
Q 008276          188 LNDMPSKDVVTWNSM  202 (571)
Q Consensus       188 ~~~~~~~~~~~~~~l  202 (571)
                      ..   ..+..+|...
T Consensus      1541 l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1541 LS---DRNIEYWSVE 1552 (2382)
T ss_pred             hh---cccccchhHH
Confidence            65   3444445443

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.26  E-value=11  Score=34.54  Aligned_cols=100  Identities=13%  Similarity=0.135  Sum_probs=67.6

Q ss_pred             CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCh-----hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 008276          329 KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC-QDV-----VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA  402 (571)
Q Consensus       329 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  402 (571)
                      |.+....+...++..-....+++.+...+-.+.. |+.     .+-...++.+. .-+.++++.++..=+..|+-||..+
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~  137 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT  137 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence            4444555555666655666777888777766653 211     11112222222 3356788888888888899999999


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008276          403 FVSVLSACSHAGLLEEGRYYFKIMTEQ  429 (571)
Q Consensus       403 ~~~l~~~~~~~~~~~~a~~~~~~~~~~  429 (571)
                      ++.+++.+.+.+++.+|.++.-.|...
T Consensus       138 ~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  138 FCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            999999999999999888877766554

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=84.16  E-value=0.73  Score=37.60  Aligned_cols=90  Identities=13%  Similarity=0.195  Sum_probs=64.6

Q ss_pred             CChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHc
Q 008276           29 LSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNN  108 (571)
Q Consensus        29 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~  108 (571)
                      .....+++.+.+.+.+......++.+. ..+...++..++.++..|++.++.++..++++....   .-...++..+.+.
T Consensus         8 ~~~~~vi~~~~~~~~~~~l~~yLe~~~-~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~   83 (143)
T PF00637_consen    8 LEISEVISAFEERNQPEELIEYLEALV-KENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKH   83 (143)
T ss_dssp             SCSCCCHHHCTTTT-GGGCTCCHHHHH-HTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTT
T ss_pred             cCHHHHHHHHHhCCCHHHHHHHHHHHH-hcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhc
Confidence            344556777788888888888888888 666666788889999999998887888888774333   3344566777777


Q ss_pred             CChhHHHHHHHHHH
Q 008276          109 YLYYDALHVYKNMS  122 (571)
Q Consensus       109 ~~~~~A~~~~~~m~  122 (571)
                      |.+++|.-++.++.
T Consensus        84 ~l~~~a~~Ly~~~~   97 (143)
T PF00637_consen   84 GLYEEAVYLYSKLG   97 (143)
T ss_dssp             TSHHHHHHHHHCCT
T ss_pred             chHHHHHHHHHHcc
Confidence            77777777776653

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=84.15  E-value=2.4  Score=26.09  Aligned_cols=27  Identities=15%  Similarity=0.233  Sum_probs=21.9

Q ss_pred             HHHHHHHhCCCchHHHHHHHHHHHCCC
Q 008276          201 SMVAGYAQNGRFDEALDVCREMESLRI  227 (571)
Q Consensus       201 ~li~~~~~~g~~~~a~~~~~~m~~~g~  227 (571)
                      .+..+|...|+.+.|.+++++....|-
T Consensus         4 dLA~ayie~Gd~e~Ar~lL~evl~~~~   30 (44)
T TIGR03504         4 DLARAYIEMGDLEGARELLEEVIEEGD   30 (44)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence            467888999999999999998886543

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=83.81  E-value=62  Score=34.10  Aligned_cols=49  Identities=14%  Similarity=0.302  Sum_probs=31.1

Q ss_pred             cCCHHHHHHHHHHHHhhC---CC-CchhHH-----HHHHHHHhcCCHHHHHHHHHHHH
Q 008276          481 YSNMDIGILAADHIFHLA---PN-QSGYYV-----LLSNIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       481 ~g~~~~A~~~~~~~~~~~---p~-~~~~~~-----~l~~~~~~~g~~~~A~~~~~~m~  529 (571)
                      .|+..+.......+....   |+ ....|.     .+...+...|+.++|.....+..
T Consensus       547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~  604 (608)
T PF10345_consen  547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD  604 (608)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            688887766666655433   22 223443     34445777899999998877654

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=83.54  E-value=4.8  Score=35.29  Aligned_cols=115  Identities=12%  Similarity=0.040  Sum_probs=63.7

Q ss_pred             HhhcCCCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH-HHHHHHHhcCCHH
Q 008276          409 ACSHAGLLEEGRYYFKIMTEQYKLVPRI-EHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIWG-SLVAACCLYSNMD  485 (571)
Q Consensus       409 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~-~l~~~~~~~g~~~  485 (571)
                      .|.....++.|...|.+..   -+.|+. ..|..-+..+.+..+++.+..--.+. .+.|+..--. .+..+......++
T Consensus        19 k~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~   95 (284)
T KOG4642|consen   19 KCFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD   95 (284)
T ss_pred             cccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence            3555566777777666665   335555 44556666666777777766555444 5566554333 3344455677777


Q ss_pred             HHHHHHHHHHhhC-----CCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 008276          486 IGILAADHIFHLA-----PNQSGYYVLLSNIYAKAGRWGDVKRVRK  526 (571)
Q Consensus       486 ~A~~~~~~~~~~~-----p~~~~~~~~l~~~~~~~g~~~~A~~~~~  526 (571)
                      +|+..++++.++.     |.-..+...|..+-..-=...+..++.+
T Consensus        96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q  141 (284)
T KOG4642|consen   96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ  141 (284)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence            7777777775533     2333445555443333333333444443

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=83.38  E-value=10  Score=28.29  Aligned_cols=49  Identities=14%  Similarity=0.253  Sum_probs=33.2

Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 008276          461 QMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS  509 (571)
Q Consensus       461 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  509 (571)
                      .+.+-|++....+.+++|.+.+|+..|+++++-+...-.+....|..++
T Consensus        38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l   86 (108)
T PF02284_consen   38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL   86 (108)
T ss_dssp             TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred             ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence            3366788888888889999999999999988888776654444665553

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=83.25  E-value=9.9  Score=28.02  Aligned_cols=47  Identities=11%  Similarity=0.253  Sum_probs=32.7

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 008276          462 MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL  508 (571)
Q Consensus       462 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  508 (571)
                      +..-|++....+.+++|.+.+|+..|+++++-+...-.++...|..+
T Consensus        36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~   82 (103)
T cd00923          36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI   82 (103)
T ss_pred             cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence            35677888888888888888888888888887665444344455444

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=82.86  E-value=22  Score=30.53  Aligned_cols=73  Identities=11%  Similarity=-0.047  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 008276          382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK--LVPRIEHFACLVDLLGRAGKVEEA  455 (571)
Q Consensus       382 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A  455 (571)
                      +.|...|-.+...+.--++.....|...|. ..+.+++..++-...+...  -.+|+..+.+|+..+.+.|+++.|
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            444444444444443333333333433333 3444555555544443211  133445555555555555555444

>PRK09687 putative lyase; Provisional

Probab=82.62  E-value=41  Score=31.17  Aligned_cols=75  Identities=12%  Similarity=0.024  Sum_probs=36.5

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 008276          362 CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFAC  441 (571)
Q Consensus       362 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  441 (571)
                      .++...-...+.++.+.++ ..|+..+-+..+.+.     .....+.++...|+. +|...+..+.+.   .||..+-..
T Consensus       203 D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~~---~~d~~v~~~  272 (280)
T PRK09687        203 DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLYK---FDDNEIITK  272 (280)
T ss_pred             CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHhh---CCChhHHHH
Confidence            3455555555555555555 344444444444321     123455556666653 456666655542   235444444


Q ss_pred             HHHHH
Q 008276          442 LVDLL  446 (571)
Q Consensus       442 l~~~~  446 (571)
                      .+.++
T Consensus       273 a~~a~  277 (280)
T PRK09687        273 AIDKL  277 (280)
T ss_pred             HHHHH
Confidence            44433

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=82.46  E-value=1  Score=41.51  Aligned_cols=117  Identities=14%  Similarity=0.072  Sum_probs=71.7

Q ss_pred             hcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 008276          411 SHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNER-IWGSLVAACCLYSNMDIGI  488 (571)
Q Consensus       411 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~  488 (571)
                      ...|.++.|++.|-..++  ..++....|..-...+.+.++...|++-+... .+.||.. -|-.-..+....|++++|.
T Consensus       125 ln~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa  202 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA  202 (377)
T ss_pred             hcCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence            456778888888877765  33445566666677777788887777776655 5555432 3333344455678888888


Q ss_pred             HHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          489 LAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       489 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      ..+..+.+++-+ ..+-..+-...-+++..++=...+++..+
T Consensus       203 ~dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~~  243 (377)
T KOG1308|consen  203 HDLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERARE  243 (377)
T ss_pred             HHHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence            888888887732 22333333444555555555555554443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=82.02  E-value=26  Score=28.47  Aligned_cols=49  Identities=12%  Similarity=0.155  Sum_probs=31.3

Q ss_pred             cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276          412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM  462 (571)
Q Consensus       412 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  462 (571)
                      ..++.+++..+++.+.--..-.+...++.  ...+...|++++|..+|++.
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l   70 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILREL   70 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhh
Confidence            46777888888877764322223334433  34456788888888888887

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=81.72  E-value=79  Score=33.88  Aligned_cols=55  Identities=15%  Similarity=0.066  Sum_probs=29.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCC--chhHH---HHHHH--HHhcCCHHHHHHHHHH
Q 008276          473 SLVAACCLYSNMDIGILAADHIFHLAPNQ--SGYYV---LLSNI--YAKAGRWGDVKRVRKF  527 (571)
Q Consensus       473 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~---~l~~~--~~~~g~~~~A~~~~~~  527 (571)
                      .|+......|++++|...++++..+.-..  ...|.   ..+..  -...|+.++|.....+
T Consensus       623 ~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         623 MLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence            45555666778887777777776644211  11121   11111  2345777777666554

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=81.08  E-value=13  Score=32.73  Aligned_cols=64  Identities=9%  Similarity=0.098  Sum_probs=40.2

Q ss_pred             HHHHHHHHHhcCCHH-------HHHHHHHHHHhhC--C----CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008276          471 WGSLVAACCLYSNMD-------IGILAADHIFHLA--P----NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK  534 (571)
Q Consensus       471 ~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~--p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  534 (571)
                      +.-+.+.|...|+.+       .|...|+++.+..  |    +.......++....+.|++++|.+.|.++...+-.
T Consensus       121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            344445555566644       4455555555433  2    22346667888888899999999999888765433

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=80.91  E-value=63  Score=32.19  Aligned_cols=175  Identities=13%  Similarity=0.114  Sum_probs=112.3

Q ss_pred             ChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 008276          263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD  342 (571)
Q Consensus       263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  342 (571)
                      |-....+++..+....++.-+..+..+|...|  .+...|..++.+|... ..+.-..+|+++.+..+ .|+.....|..
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~  140 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD  140 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence            34456677888888888888888889998854  5677888888888877 66778888988888764 34444445555


Q ss_pred             HHHhcCCHHHHHHHHhhCCC------CCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhc
Q 008276          343 MYAKCGSLTEARTVFDQMRC------QDV---VSWTSMISAYGMSGQGYDAVALFSKMLMS-GLCPDSIAFVSVLSACSH  412 (571)
Q Consensus       343 ~~~~~~~~~~a~~~~~~~~~------~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~  412 (571)
                      .|-+ ++.+.+..+|..+..      .+.   ..|.-+...  -..+.+..+.+..+.... |..--...+.-+-.-|..
T Consensus       141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~  217 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE  217 (711)
T ss_pred             HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence            5555 777777777776542      111   134444432  134556666666555542 333334455556667777


Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008276          413 AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL  446 (571)
Q Consensus       413 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  446 (571)
                      ..++.+|++++..+.+.  -..|......+++-+
T Consensus       218 ~eN~~eai~Ilk~il~~--d~k~~~ar~~~i~~l  249 (711)
T COG1747         218 NENWTEAIRILKHILEH--DEKDVWARKEIIENL  249 (711)
T ss_pred             ccCHHHHHHHHHHHhhh--cchhhhHHHHHHHHH
Confidence            88888888888877763  334555555555544

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=80.48  E-value=50  Score=30.83  Aligned_cols=146  Identities=11%  Similarity=0.100  Sum_probs=74.0

Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc--CC----CHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCH
Q 008276          381 GYDAVALFSKMLMSGLCPDSIAFVSVLSACSH--AG----LLEEGRYYFKIMTEQYKLVPRI--EHFACLVDLLGRAGKV  452 (571)
Q Consensus       381 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~  452 (571)
                      +++.+.+++.|.+.|++-+..+|.........  ..    ....|..+|+.|++++.+-...  ..+..++..  ..++.
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            34566788888888888777766553332222  22    3456888999998876654333  334443322  34443


Q ss_pred             H----HHHHHHHhC---CCCC-CHH-HHHHHHHHHHhcCC--HHHHHHHHHHHHhhC-CCCchhHHHHHHHHHhcCCHHH
Q 008276          453 E----EAYDLIKQM---PMEP-NER-IWGSLVAACCLYSN--MDIGILAADHIFHLA-PNQSGYYVLLSNIYAKAGRWGD  520 (571)
Q Consensus       453 ~----~A~~~~~~~---~~~p-~~~-~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~  520 (571)
                      +    .++.+++.+   ++.. |.. ....++..+-...+  ..++..+++.+.+.+ +.....|..++-.-.-.+..++
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~  235 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK  235 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence            3    344444444   4444 332 33333333222211  446777777777766 3333344444443333333324


Q ss_pred             HHHHHHHH
Q 008276          521 VKRVRKFM  528 (571)
Q Consensus       521 A~~~~~~m  528 (571)
                      ...-+.++
T Consensus       236 ~~~~i~ev  243 (297)
T PF13170_consen  236 IVEEIKEV  243 (297)
T ss_pred             HHHHHHHH
Confidence            44433333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	571
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-10
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	9e-10
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.4 bits (161), Expect = 2e-11
 Identities = 84/591 (14%), Positives = 154/591 (26%), Gaps = 214/591 (36%)

Query: 34  CNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNK 93
           C D+ D    I  L K     II                       +  T  +F  + +K
Sbjct: 35  CKDVQDMPKSI--LSKEEIDHIIMS-----KD-------------AVSGTLRLFWTLLSK 74

Query: 94  --NVV--FFNVLIRSYVNNYLY-YDALHVYKNMSVHGFDPDCYT--YPCVLKACSGSNSL 146
              +V  F   ++R    NY +    +   +        P   T  Y          N +
Sbjct: 75  QEEMVQKFVEEVLRI---NYKFLMSPIKTEQR------QPSMMTRMYIEQRDRLYNDNQV 125

Query: 147 LVGLQI----HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKE--ARRVLND------MPSK 194
                +        ++  L   L     ++ + G  G  K   A  V         M  K
Sbjct: 126 FAKYNVSRLQPYLKLRQAL-LELRPAKNVL-IDGVLGSGKTWVALDVCLSYKVQCKMDFK 183

Query: 195 DVVTWNSMVAGYAQNGRFDEALDVCREMESL--RIKPDADTMASLLPSVTNTSPENVLSV 252
             + W ++          +    V   ++ L  +I P+  +        ++     + S+
Sbjct: 184 --IFWLNL-------KNCNSPETVLEMLQKLLYQIDPNWTS----RSDHSSNIKLRIHSI 230

Query: 253 KE---MFLK----------LDN--------------KNLV---SWNVMIAVYANNSM--- 279
           +      LK          L N              K L+      V   + A  +    
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290

Query: 280 ---------PAEAVDL---YLQM-------EVHGIEPNAISVASVLPACGDLSALLLGRK 320
                    P E   L   YL         EV    P  +S              ++   
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS--------------IIAES 336

Query: 321 IHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF------DQMRCQDVVSWTSMISA 374
           I   +       N +        +  C  LT             + R             
Sbjct: 337 IRDGLATWD---NWK--------HVNCDKLTTIIESSLNVLEPAEYR------------- 372

Query: 375 YGMSGQGYDAVALFSK------MLMSGLCPDSIAFVS--VLSACSHAGLLE----EGRYY 422
                + +D +++F        +L+S +  D I      V++      L+E    E    
Sbjct: 373 -----KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

Query: 423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYS 482
             I +   +L  ++E+   L         + + Y++ K                    + 
Sbjct: 428 --IPSIYLELKVKLENEYALHR------SIVDHYNIPKT-------------------FD 460

Query: 483 NMDIGILAAD-----HI-FHLAP-NQSGYYVLLSNIYAKAGRWGDVKRVRK 526
           + D+     D     HI  HL          L   ++    R+ + K +R 
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF-RFLEQK-IRH 509

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 59/415 (14%), Positives = 118/415 (28%), Gaps = 135/415 (32%)

Query: 220 REMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSM 279
            E++ + +  DA +    L     +  E +  V++   ++   N   + +M  +      
Sbjct: 49  EEIDHIIMSKDAVSGTLRLFWTLLSKQEEM--VQKFVEEVLRINY-KF-LMSPIKTEQRQ 104

Query: 280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA 339
           P+    +Y              +        D        K +  V R +  P L+L  A
Sbjct: 105 PSMMTRMY--------------IEQRDRLYNDNQVF---AKYN--VSRLQ--PYLKLRQA 143

Query: 340 LVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVA---LFSKMLMSGL 396
           L+        L  A+ V        ++         G+ G G   VA     S  +   +
Sbjct: 144 LL-------ELRPAKNV--------LI--------DGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 397 CPDSIAFVSVLSACSHAGLLE----------------------------EGRYYFK--IM 426
               I ++++ +  S   +LE                              +   +  + 
Sbjct: 181 -DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 427 TEQYK---LV------PR-IEHFA--CLVDLLGRAGKVEEAYDLIKQMPMEPNERIWG-- 472
           ++ Y+   LV       +    F   C + L  R  +V +         +  +       
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 473 -----SLVAACCLYSNMDIGILAADHIFHLAPNQ--SGYYVLLSNIYAK----AGRWGDV 521
                SL+     Y +     L         P +  +     LS I          W + 
Sbjct: 300 PDEVKSLLL---KYLDCRPQDL---------PREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 522 KRVRKFMNSKGIKKMPGASVEMNDQVQIIALPLRSSKC---LTTGPKNV--PPIV 571
           K V    N   +  +  +S+ + +       P    K    L+  P +   P I+
Sbjct: 348 KHV----NCDKLTTIIESSLNVLE-------PAEYRKMFDRLSVFPPSAHIPTIL 391

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 63.3 bits (152), Expect = 2e-10
 Identities = 38/264 (14%), Positives = 87/264 (32%), Gaps = 24/264 (9%)

Query: 208 QNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSV--------------- 252
             GR+ + L+  +  + +R++     +     S    +    L V               
Sbjct: 22  PCGRWAKILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLED 81

Query: 253 --KEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACG 310
             ++       + L           +  +       + Q ++ G +   ++         
Sbjct: 82  CTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTD 141

Query: 311 DLS-ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMR----CQDV 365
            L  A  L    H   +++KL   L + NA++  +A+ G+  E   V   ++      D+
Sbjct: 142 QLPLAHHLLVVHHGQRQKRKL-LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200

Query: 366 VSWTSMISAYGMSGQGYDAVA-LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK 424
           +S+ + +   G   Q    +     +M   GL   ++    +LS    A +L+       
Sbjct: 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKP 260

Query: 425 IMTEQYKLVPRIEHFACLVDLLGR 448
             +   +L P +     L D+  +
Sbjct: 261 TFSLPPQLPPPVNTSKLLRDVYAK 284

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 60.6 bits (145), Expect = 9e-10
 Identities = 33/262 (12%), Positives = 79/262 (30%), Gaps = 15/262 (5%)

Query: 128 PDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRV 187
           P       +L+   G  SL V         +  L                   L  A  +
Sbjct: 90  PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149

Query: 188 LNDMPSK-------DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
           L     +        +  +N+++ G+A+ G F E + V   ++   + PD  + A+ L  
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209

Query: 241 VTNTSPENVLS---VKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEP 297
           +     +       +++M  +      +   V+++     ++      +     +    P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269

Query: 298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN--LRLENAL---VDMYAKCGSLTE 352
             ++ + +L         +   K+H  ++  +      L +E A    V    K    ++
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSK 329

Query: 353 ARTVFDQMRCQDVVSWTSMISA 374
                 +        W   +  
Sbjct: 330 EVKHARKTLKTLRDQWEKALCR 351

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 41.7 bits (96), Expect = 7e-04
 Identities = 15/152 (9%), Positives = 44/152 (28%), Gaps = 10/152 (6%)

Query: 386 ALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK--LVPRIEHFACLV 443
           A   +   + L       ++    C     L    +   +   Q +   +  ++ +  ++
Sbjct: 113 APSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVM 172

Query: 444 DLLGRAGKVEEAYDLIKQMP---MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPN 500
               R G  +E   ++  +    + P+   + + +         D      +        
Sbjct: 173 LGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC---MGRQDQDAGTIERCLEQMSQ 229

Query: 501 QSGYYVLLSN--IYAKAGRWGDVKRVRKFMNS 530
           +      L    + ++  R   +K V K   +
Sbjct: 230 EGLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	571
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.95
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.94
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.94
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.93
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.92
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.92
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.92
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.87
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.87
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.84
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.83
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.83
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.82
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.81
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.81
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.81
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.8
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.8
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.8
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.79
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.78
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.77
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.77
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.77
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.76
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.76
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.75
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.72
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.71
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.69
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.68
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.67
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.65
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.64
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.64
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.62
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.61
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.61
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.6
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.59
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.58
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.58
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.58
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.58
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.58
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.57
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.57
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.57
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.57
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.56
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.56
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.56
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.56
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.54
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.54
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.53
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.52
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.5
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.46
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.44
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.44
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.43
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.42
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.42
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.42
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.41
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.41
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.4
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.38
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.37
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.35
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.35
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.34
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.33
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.32
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.32
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.27
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.21
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.2
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.19
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.18
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.18
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.18
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.16
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.14
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.14
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.14
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.13
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.1
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.07
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.05
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.03
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.01
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.01
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.98
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.98
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.98
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.97
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.97
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.94
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.93
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.93
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.91
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.9
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.9
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.9
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.9
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.87
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.87
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.86
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.86
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.86
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.86
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.83
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.83
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.82
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.77
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.77
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.76
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.76
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.75
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.75
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.75
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.74
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.73
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.73
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.73
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.7
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.69
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.68
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.67
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.67
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.65
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.64
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.64
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.63
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.63
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.62
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.61
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.6
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.6
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.6
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.59
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.58
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.58
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.57
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.55
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.54
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.54
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.54
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.54
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.52
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.52
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.51
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.49
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.49
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.48
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.44
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.42
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.41
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.41
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.38
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.38
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.38
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.37
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.36
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.36
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.35
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.35
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.34
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.33
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.32
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.31
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.31
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.3
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.3
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.29
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.28
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.24
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.23
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.2
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.2
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.17
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.15
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.13
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.12
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.08
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.08
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.03
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.02
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.99
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.98
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.97
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.96
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.93
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.86
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.81
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.75
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.67
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.67
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.64
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.47
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.46
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.41
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.4
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.38
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.33
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.33
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.31
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	97.24
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.21
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.15
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.05
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.89
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.88
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.8
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.7
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.7
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.6
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	96.21
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.16
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	95.91
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.81
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	95.51
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.51
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.36
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.18
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.16
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.06
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.86
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	94.81
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	93.95
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.64
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	93.54
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	93.31
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	92.88
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	92.82
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	92.54
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	91.86
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	91.6
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	90.67
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	89.74
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	89.25
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	89.25
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	89.15
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	89.06
2p58_C	116	Putative type III secretion protein YSCG; type III	88.88
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	88.32
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	87.5
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	87.38
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	87.08
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	86.15
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	86.03
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	85.47
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	85.39
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	85.27
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	84.6
2qx5_A	661	Nucleoporin NIC96; mRNA transport, nuclear pore co	84.39
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	83.99
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	82.1
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	80.92
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	80.77
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	80.02

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9.3e-40  Score=340.02  Aligned_cols=447  Identities=10%  Similarity=0.002  Sum_probs=378.1

Q ss_pred             HhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHH
Q 008276           73 TYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQI  152 (571)
Q Consensus        73 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~  152 (571)
                      .+...|.+..+...+..++.++...|+.++..+.+.|++++|+.+|++|..  ..|+..++..++.+|.+.|++++|..+
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~  139 (597)
T 2xpi_A           62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL  139 (597)
T ss_dssp             --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence            345667788888888888888999999999999999999999999999985  467888999999999999999999999


Q ss_pred             HHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCC-------------------CchhHHHHHHHHHhCCCch
Q 008276          153 HCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSK-------------------DVVTWNSMVAGYAQNGRFD  213 (571)
Q Consensus       153 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~  213 (571)
                      ++.+...  +++..+++.++.+|.+.|++++|.++|+++...                   +..+|+.++.+|.+.|+++
T Consensus       140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  217 (597)
T 2xpi_A          140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD  217 (597)
T ss_dssp             HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence            9987643  678899999999999999999999999965433                   3678999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCC-HHHHHHH--------------------------------------HHHhcCCCCccHHHHHH
Q 008276          214 EALDVCREMESLRIKPD-ADTMASL--------------------------------------LPSVTNTSPENVLSVKE  254 (571)
Q Consensus       214 ~a~~~~~~m~~~g~~p~-~~t~~~l--------------------------------------l~~~~~~~~~~~~~a~~  254 (571)
                      +|+++|++|.+.+  |+ ...+..+                                      +..+.+.++  .+.|.+
T Consensus       218 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~A~~  293 (597)
T 2xpi_A          218 RAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDE--LRRAED  293 (597)
T ss_dssp             HHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHH--HHHHHH
T ss_pred             HHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcch--HHHHHH
Confidence            9999999998754  33 2222222                                      223333333  889999


Q ss_pred             HHhhCCC--CChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCC
Q 008276          255 MFLKLDN--KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP  332 (571)
Q Consensus       255 ~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  332 (571)
                      +++++..  ++..+|+.++..|.+.|++++|.++|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.
T Consensus       294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~  371 (597)
T 2xpi_A          294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE  371 (597)
T ss_dssp             HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence            9999886  889999999999999999999999999999765 4477889999999999999999999999999765 66


Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008276          333 NLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA  409 (571)
Q Consensus       333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~  409 (571)
                      +..+++.++.+|.+.|++++|.++|+++.+   .+..+|+.++..|.+.|++++|+++|+++.+.+ +.+..+|..++.+
T Consensus       372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~  450 (597)
T 2xpi_A          372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ  450 (597)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence            788999999999999999999999998763   467899999999999999999999999999853 3477899999999


Q ss_pred             hhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHh
Q 008276          410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-------PMEPN--ERIWGSLVAACCL  480 (571)
Q Consensus       410 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~  480 (571)
                      |.+.|++++|.++|+++.+.  .+.+..+|+.++..|.+.|++++|.++|+++       +..|+  ..+|..++.+|.+
T Consensus       451 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~  528 (597)
T 2xpi_A          451 HMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK  528 (597)
T ss_dssp             HHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence            99999999999999999874  3457889999999999999999999999988       44776  7899999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       481 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      .|++++|+..++++.+.+|+++.+|..++.+|.+.|++++|.++++++.+..
T Consensus       529 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~  580 (597)
T 2xpi_A          529 LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS  580 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999998764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.6e-38  Score=330.78  Aligned_cols=447  Identities=10%  Similarity=0.008  Sum_probs=374.2

Q ss_pred             cccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHccc--CCCChhhHHHHHH
Q 008276           26 YTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEI--TNKNVVFFNVLIR  103 (571)
Q Consensus        26 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~  103 (571)
                      ++...++.++..+.+.|++++|..+|.++. ...  |+..++..++.+|.+.|++++|..+|+.+  ..++..+++.++.
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~  158 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQYKCAAFVGEKVL-DIT--GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF  158 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHH-hhC--CCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence            455567889999999999999999999988 543  57788889999999999999999999988  4578889999999


Q ss_pred             HHHHcCChhHHHHHHHHHHhC---------------CCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHH
Q 008276          104 SYVNNYLYYDALHVYKNMSVH---------------GFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNG  168 (571)
Q Consensus       104 ~~~~~~~~~~A~~~~~~m~~~---------------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~  168 (571)
                      +|.+.|++++|+++|+++...               |.+++..+|+.++.++.+.|++++|.++|+++.+.+ +.+...+
T Consensus       159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~  237 (597)
T 2xpi_A          159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAF  237 (597)
T ss_dssp             HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHH
Confidence            999999999999999853221               223356789999999999999999999999998875 2233333


Q ss_pred             HHH--------------------------------------HHHHHhCCCHHHHHHHHccCCC--CCchhHHHHHHHHHh
Q 008276          169 NGL--------------------------------------VAMYGKCGCLKEARRVLNDMPS--KDVVTWNSMVAGYAQ  208 (571)
Q Consensus       169 ~~l--------------------------------------~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~  208 (571)
                      ..+                                      +..|.+.|++++|.++|+++.+  ++..+|+.++.++.+
T Consensus       238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~  317 (597)
T 2xpi_A          238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV  317 (597)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence            333                                      3344556677777777777665  566677777777777


Q ss_pred             CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHH
Q 008276          209 NGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYL  288 (571)
Q Consensus       209 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  288 (571)
                      .|++++|+++|+++.+.+  |                                .+..+++.++.+|.+.|++++|..+++
T Consensus       318 ~g~~~~A~~~~~~~~~~~--~--------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~  363 (597)
T 2xpi_A          318 RSRFIDVLAITTKILEID--P--------------------------------YNLDVYPLHLASLHESGEKNKLYLISN  363 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHC--T--------------------------------TCCTTHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHcC--c--------------------------------ccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            777777777777766432  2                                256789999999999999999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCh
Q 008276          289 QMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDV  365 (571)
Q Consensus       289 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~  365 (571)
                      ++.+.. +.+..++..++..|.+.|++++|.++|+.+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+   .+.
T Consensus       364 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  441 (597)
T 2xpi_A          364 DLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH  441 (597)
T ss_dssp             HHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS
T ss_pred             HHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence            998653 5678899999999999999999999999999865 45688999999999999999999999998763   478


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc---CCCCC--HHHHH
Q 008276          366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY---KLVPR--IEHFA  440 (571)
Q Consensus       366 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~  440 (571)
                      .+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..+.+.|++++|.++|+++.+..   +..|+  ..+|.
T Consensus       442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~  520 (597)
T 2xpi_A          442 LPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA  520 (597)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence            899999999999999999999999999852 3467899999999999999999999999997653   44676  78999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 008276          441 CLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA  513 (571)
Q Consensus       441 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  513 (571)
                      .++.+|.+.|++++|.++++++ ...| +..+|..+..+|.+.|++++|...++++++++|+++.++..++.+|.
T Consensus       521 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          521 NLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence            9999999999999999999988 4445 78999999999999999999999999999999999999999988764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=7.5e-28  Score=236.00  Aligned_cols=374  Identities=12%  Similarity=0.079  Sum_probs=315.2

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhCCCCCCc-ccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 008276          101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDC-YTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG  179 (571)
Q Consensus       101 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g  179 (571)
                      +...+.+.|++++|++.++++.+.  .|+. ..+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|
T Consensus         5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g   81 (388)
T 1w3b_A            5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence            356677889999999999888775  3544 455566667788899999999988888764 567788999999999999


Q ss_pred             CHHHHHHHHccCCC--C-CchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHH
Q 008276          180 CLKEARRVLNDMPS--K-DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMF  256 (571)
Q Consensus       180 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~  256 (571)
                      ++++|+..|+++.+  | +..+|..+..++.+.|++++|.+.|+++.+.  .|+                          
T Consensus        82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~--------------------------  133 (388)
T 1w3b_A           82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPD--------------------------  133 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTT--------------------------
T ss_pred             CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC--------------------------
Confidence            99999999988763  4 4557889999999999999999999988763  343                          


Q ss_pred             hhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhH
Q 008276          257 LKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL  336 (571)
Q Consensus       257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  336 (571)
                            +...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...|+.+.+.+ +.+...
T Consensus       134 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~  205 (388)
T 1w3b_A          134 ------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDA  205 (388)
T ss_dssp             ------CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             ------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHH
Confidence                  34567777888888999999999999988753 3456788888889999999999999999999876 456778


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhc
Q 008276          337 ENALVDMYAKCGSLTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSH  412 (571)
Q Consensus       337 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~  412 (571)
                      +..+...+...|++++|...+++..+  | +..++..+...+...|++++|++.|+++.+.  .| +..+|..+...+..
T Consensus       206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~  283 (388)
T 1w3b_A          206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKE  283 (388)
T ss_dssp             HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHH
Confidence            88889999999999999999987753  3 5778999999999999999999999999984  45 46689999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 008276          413 AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILA  490 (571)
Q Consensus       413 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~  490 (571)
                      .|++++|...|+++.+.  .+.+..++..+...+...|++++|.+.++++ ...| +..++..+...+.+.|++++|+..
T Consensus       284 ~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  361 (388)
T 1w3b_A          284 KGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH  361 (388)
T ss_dssp             HSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999874  4567788999999999999999999999987 5556 578899999999999999999999


Q ss_pred             HHHHHhhCCCCchhHHHHHHHHHhcCC
Q 008276          491 ADHIFHLAPNQSGYYVLLSNIYAKAGR  517 (571)
Q Consensus       491 ~~~~~~~~p~~~~~~~~l~~~~~~~g~  517 (571)
                      ++++++..|+++.+|..++.++...|+
T Consensus       362 ~~~a~~~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          362 YKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence            999999999999999999998887764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=1.2e-26  Score=227.36  Aligned_cols=355  Identities=13%  Similarity=0.052  Sum_probs=310.0

Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCC---CCchhHHHHHHHHHhCCCch
Q 008276          137 LKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS---KDVVTWNSMVAGYAQNGRFD  213 (571)
Q Consensus       137 i~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~  213 (571)
                      ...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+   .+..+|..+..++.+.|+++
T Consensus         6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~   84 (388)
T 1w3b_A            6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ   84 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence            455678899999999999998874 44567778888899999999999999987654   46678999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 008276          214 EALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH  293 (571)
Q Consensus       214 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  293 (571)
                      +|+..|+++...  .|+                                +..+|..+..++.+.|++++|.+.|+++.+.
T Consensus        85 ~A~~~~~~al~~--~p~--------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (388)
T 1w3b_A           85 EAIEHYRHALRL--KPD--------------------------------FIDGYINLAAALVAAGDMEGAVQAYVSALQY  130 (388)
T ss_dssp             HHHHHHHHHHHH--CTT--------------------------------CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc--Ccc--------------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999763  343                                4567888999999999999999999999876


Q ss_pred             CCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHH
Q 008276          294 GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--Q-DVVSWTS  370 (571)
Q Consensus       294 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~  370 (571)
                      . +.+...+..+...+...|++++|...|+.+.+.. +.+..++..+...+...|++++|...|+++.+  | +...|..
T Consensus       131 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  208 (388)
T 1w3b_A          131 N-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN  208 (388)
T ss_dssp             C-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             C-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            4 3345667778888999999999999999999875 45678899999999999999999999999874  3 5668999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 008276          371 MISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA  449 (571)
Q Consensus       371 li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  449 (571)
                      +...+...|++++|+..|++..+  ..| +..++..+...+...|++++|...|+++.+.  .+.+...+..++..+.+.
T Consensus       209 lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~  284 (388)
T 1w3b_A          209 LGNVLKEARIFDRAVAAYLRALS--LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEK  284 (388)
T ss_dssp             HHHHHHTTTCTTHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh--hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHc
Confidence            99999999999999999999988  455 4668899999999999999999999999874  344567899999999999


Q ss_pred             CCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 008276          450 GKVEEAYDLIKQM-PM-EPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKF  527 (571)
Q Consensus       450 g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  527 (571)
                      |++++|.+.++++ .. +.+..+|..+...+...|++++|+..++++.+..|++..++..++.+|.+.|++++|...+++
T Consensus       285 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  364 (388)
T 1w3b_A          285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE  364 (388)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999988 33 347889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCC
Q 008276          528 MNSKG  532 (571)
Q Consensus       528 m~~~~  532 (571)
                      +.+..
T Consensus       365 a~~~~  369 (388)
T 1w3b_A          365 AIRIS  369 (388)
T ss_dssp             HHTTC
T ss_pred             HHhhC
Confidence            98643

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=5.2e-28  Score=240.83  Aligned_cols=184  Identities=14%  Similarity=0.136  Sum_probs=174.3

Q ss_pred             hhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCc---------hHHHHHHHHHHHHcCCCCChh
Q 008276          265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA---------LLLGRKIHRYVERKKLQPNLR  335 (571)
Q Consensus       265 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~  335 (571)
                      ..++.+|++|++.|++++|+++|++|.+.|++||..||+.+|.+|++.+.         ++.|.++|++|.+.|+.||..
T Consensus        27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~  106 (501)
T 4g26_A           27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA  106 (501)
T ss_dssp             HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence            34777889999999999999999999999999999999999999987653         788999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 008276          336 LENALVDMYAKCGSLTEARTVFDQMRC----QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS  411 (571)
Q Consensus       336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~  411 (571)
                      +|+.+|.+|++.|++++|.++|++|.+    ||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.|+.+|+
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~  186 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM  186 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence            999999999999999999999999973    8999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 008276          412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA  449 (571)
Q Consensus       412 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  449 (571)
                      +.|++++|.+++++|.+. +..|+..||+.++..|...
T Consensus       187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred             hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence            999999999999999988 9999999999999988763

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.95  E-value=2.5e-27  Score=235.99  Aligned_cols=134  Identities=16%  Similarity=0.212  Sum_probs=74.2

Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCC---------hHHHHHHHHHHHHhCCCCchhH
Q 008276           97 FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS---------LLVGLQIHCSVVKVGLDYNLFN  167 (571)
Q Consensus        97 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~~  167 (571)
                      .++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+.         ++.|.++|++|...|+.||..+
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t  107 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT  107 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence            4566666666666666666666666666666666666666666655443         4556666666666666666555


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHccCCC----CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 008276          168 GNGLVAMYGKCGCLKEARRVLNDMPS----KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPD  230 (571)
Q Consensus       168 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  230 (571)
                      |++||.+|++.|++++|.++|++|.+    ||..+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd  174 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE  174 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence            55555555555555444444444431    3444444444444444444444444444444444443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.3e-24  Score=221.47  Aligned_cols=264  Identities=8%  Similarity=-0.099  Sum_probs=222.7

Q ss_pred             hhhHHHHHHHHHH---cCCchHHHHHHHHHHH-----CCCCC--------CHHHHHHHHHHhccCCchHHHHHHHHHHHH
Q 008276          264 LVSWNVMIAVYAN---NSMPAEAVDLYLQMEV-----HGIEP--------NAISVASVLPACGDLSALLLGRKIHRYVER  327 (571)
Q Consensus       264 ~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~-----~g~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  327 (571)
                      ...+......+..   .|++++|..+|+++.+     ....|        +..++..+...+...|+++.|...++.+.+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  265 (514)
T 2gw1_A          186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE  265 (514)
T ss_dssp             HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            4455555555554   8999999999999987     31122        345677788889999999999999999998


Q ss_pred             cCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 008276          328 KKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFV  404 (571)
Q Consensus       328 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  404 (571)
                      ....  ...+..+..++...|++++|...++.+.+   .+...+..+...+...|++++|...++++.+.. +.+...+.
T Consensus       266 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  342 (514)
T 2gw1_A          266 LFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYI  342 (514)
T ss_dssp             HCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHH
T ss_pred             hCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHH
Confidence            7643  88888899999999999999999998764   466789999999999999999999999999853 23566888


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHH
Q 008276          405 SVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM----PMEPN----ERIWGSLVA  476 (571)
Q Consensus       405 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~  476 (571)
                      .+...+...|++++|...++.+.+.  .+.+...+..+...+...|++++|...++++    +..++    ...|..+..
T Consensus       343 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~  420 (514)
T 2gw1_A          343 QLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT  420 (514)
T ss_dssp             HHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence            8999999999999999999999875  3445678889999999999999999999887    22222    348888999


Q ss_pred             HHHh---cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          477 ACCL---YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       477 ~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      .+..   .|++++|...++++.+..|+++.++..++.+|.+.|++++|...+++..+..
T Consensus       421 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  479 (514)
T 2gw1_A          421 LLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA  479 (514)
T ss_dssp             HHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence            9999   9999999999999999999999999999999999999999999999988754

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=9.6e-24  Score=214.95  Aligned_cols=446  Identities=10%  Similarity=-0.003  Sum_probs=328.4

Q ss_pred             ChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhHHHHHHHHH
Q 008276           30 SGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFFNVLIRSYV  106 (571)
Q Consensus        30 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~  106 (571)
                      .+...+..+.+.|++++|...|..++ +..  |++..+..+..+|...|++++|...|+.+.+   .+..+|..+..++.
T Consensus         8 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   84 (514)
T 2gw1_A            8 ALKDKGNQFFRNKKYDDAIKYYNWAL-ELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE   84 (514)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHH-HHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHH-hcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence            45667888999999999999999998 665  5888999999999999999999999987653   35678999999999


Q ss_pred             HcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHH---HHHHHhCCCHHH
Q 008276          107 NNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGL---VAMYGKCGCLKE  183 (571)
Q Consensus       107 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---~~~~~~~g~~~~  183 (571)
                      +.|++++|+..|+++...+ +++......++..+........+.+.+..+...+..|+......-   ............
T Consensus        85 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (514)
T 2gw1_A           85 GLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS  163 (514)
T ss_dssp             HTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred             HHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence            9999999999999998875 344455555554444333333333333222211111111100000   001111111222


Q ss_pred             HHHHHccCCC---------C-CchhHHHHHHHHHh---CCCchHHHHHHHHHHH-----CCCCCCHHHHHHHHHHhcCCC
Q 008276          184 ARRVLNDMPS---------K-DVVTWNSMVAGYAQ---NGRFDEALDVCREMES-----LRIKPDADTMASLLPSVTNTS  245 (571)
Q Consensus       184 A~~~~~~~~~---------~-~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~ll~~~~~~~  245 (571)
                      +...+.....         | +...+......+..   .|++++|+..|+++.+     ....|+.....          
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----------  233 (514)
T 2gw1_A          164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK----------  233 (514)
T ss_dssp             HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHH----------
T ss_pred             HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccC----------
Confidence            2222222211         2 23445555555554   8999999999999877     32233321000          


Q ss_pred             CccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHH
Q 008276          246 PENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYV  325 (571)
Q Consensus       246 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  325 (571)
                                     +.+...+..+...+...|++++|...++++.+..  |+...+..+...+...|++++|...++.+
T Consensus       234 ---------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  296 (514)
T 2gw1_A          234 ---------------EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKA  296 (514)
T ss_dssp             ---------------HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHH
T ss_pred             ---------------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                           1135678888999999999999999999998865  33888888999999999999999999999


Q ss_pred             HHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 008276          326 ERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIA  402 (571)
Q Consensus       326 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  402 (571)
                      .+.. +.+...+..+..++...|++++|...++.+.+   .+...+..+...+...|++++|...++++.+. .+.+...
T Consensus       297 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~  374 (514)
T 2gw1_A          297 LKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEV  374 (514)
T ss_dssp             HTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHH
T ss_pred             hhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHH
Confidence            9875 45677888999999999999999999998753   46778999999999999999999999999884 2335678


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 008276          403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR----IEHFACLVDLLGR---AGKVEEAYDLIKQM-PMEP-NERIWGS  473 (571)
Q Consensus       403 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~  473 (571)
                      +..+...+...|++++|...++.+.+.....++    ...+..+...+..   .|++++|.+.++++ ...| +..++..
T Consensus       375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  454 (514)
T 2gw1_A          375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIG  454 (514)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            888999999999999999999998775333333    4488899999999   99999999999987 3344 6788899


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 008276          474 LVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL  508 (571)
Q Consensus       474 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  508 (571)
                      +...+...|++++|...++++.+++|.++..+..+
T Consensus       455 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  489 (514)
T 2gw1_A          455 LAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI  489 (514)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence            99999999999999999999999999988877766

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.93  E-value=6.7e-23  Score=209.96  Aligned_cols=418  Identities=10%  Similarity=0.020  Sum_probs=193.2

Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 008276           97 FFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYG  176 (571)
Q Consensus        97 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~  176 (571)
                      .|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.++++++.+ +.+...+..+..++.
T Consensus        27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~  104 (537)
T 3fp2_A           27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE  104 (537)
T ss_dssp             HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence            34555555555555555655555555432 2244455555555555556666666655555543 334455555556666


Q ss_pred             hCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHC------CCCCCHHHHHHHHHHhcCCCCccHH
Q 008276          177 KCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESL------RIKPDADTMASLLPSVTNTSPENVL  250 (571)
Q Consensus       177 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~~  250 (571)
                      ..|++++|...|+.+. .+....+..+..+...+....|...++++...      ...|+.......+..+    .  ..
T Consensus       105 ~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~--~~  177 (537)
T 3fp2_A          105 SLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF----D--SH  177 (537)
T ss_dssp             HHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS----C--HH
T ss_pred             HcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc----C--hH
Confidence            6666666666554222 11111122222333334445555555555332      1223332222222111    0  11


Q ss_pred             HHHHHHhhCCCCChh---hHHHHHHHHH--------HcCCchHHHHHHHHHHHCCCCCC--------HHHHHHHHHHhcc
Q 008276          251 SVKEMFLKLDNKNLV---SWNVMIAVYA--------NNSMPAEAVDLYLQMEVHGIEPN--------AISVASVLPACGD  311 (571)
Q Consensus       251 ~a~~~~~~~~~~~~~---~~~~l~~~~~--------~~g~~~~A~~~~~~m~~~g~~~~--------~~~~~~ll~~~~~  311 (571)
                      .+...+......+..   ....+...+.        ..|++++|..+++++.+..  |+        ..++..+...+..
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~  255 (537)
T 3fp2_A          178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFL  255 (537)
T ss_dssp             HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHh
Confidence            111111111111111   1111111111        1134555555555555432  22        1123334444555


Q ss_pred             CCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 008276          312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALF  388 (571)
Q Consensus       312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~  388 (571)
                      .|+++.|...++.+.+..  |+...+..+...+...|++++|...++.+.+   .+..+|..+...+...|++++|+..+
T Consensus       256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  333 (537)
T 3fp2_A          256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF  333 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            555555555555555543  2244555555555555555555555555432   23445555555555555666666655


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC---
Q 008276          389 SKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PM---  464 (571)
Q Consensus       389 ~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---  464 (571)
                      +++.+.. +.+...+..+...+...|++++|...++++.+.  .+.+...+..+...+...|++++|.+.++++ ..   
T Consensus       334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  410 (537)
T 3fp2_A          334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV  410 (537)
T ss_dssp             HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence            5555521 112345555555555556666666655555543  1233445555555555556666655555554 00   


Q ss_pred             CC----CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          465 EP----NERIWGSLVAACCLY----------SNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       465 ~p----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      .+    ....+......+...          |++++|+..++++.+..|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus       411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  490 (537)
T 3fp2_A          411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI  490 (537)
T ss_dssp             CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            00    111122233344444          5566666666666665555555566666666666666666665555544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.92  E-value=1e-22  Score=203.72  Aligned_cols=326  Identities=12%  Similarity=0.063  Sum_probs=238.0

Q ss_pred             CchhHHHHHHHHHHhCCCHHHHHHHHccCCC---CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008276          163 YNLFNGNGLVAMYGKCGCLKEARRVLNDMPS---KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLP  239 (571)
Q Consensus       163 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~  239 (571)
                      .+...+..+...+.+.|++++|+.+|+.+.+   .+..+|..+..++...|++++|+..|+++.+.+  |+         
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~---------   92 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MD---------   92 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT---------
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CC---------
Confidence            3455666666667777777777777766543   345566677777777777777777777766532  22         


Q ss_pred             HhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH----HHHHHH----------
Q 008276          240 SVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA----ISVASV----------  305 (571)
Q Consensus       240 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~l----------  305 (571)
                                             +..++..++.+|...|++++|...|+++.+..  |+.    ..+..+          
T Consensus        93 -----------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~  147 (450)
T 2y4t_A           93 -----------------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLR  147 (450)
T ss_dssp             -----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHH
Confidence                                   34556666777777777777777777776542  332    333333          


Q ss_pred             --HHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCC
Q 008276          306 --LPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQ  380 (571)
Q Consensus       306 --l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~  380 (571)
                        ...+...|++++|...++.+.+.. +.+..++..+..+|.+.|++++|...|+.+.+   .+..+|..++..|...|+
T Consensus       148 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  226 (450)
T 2y4t_A          148 SQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD  226 (450)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence              334677788888888888888765 45677788888888888888888888888764   467788888889999999


Q ss_pred             hHHHHHHHHHHHHCCCCCCHH-HHHHH------------HHHhhcCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHH
Q 008276          381 GYDAVALFSKMLMSGLCPDSI-AFVSV------------LSACSHAGLLEEGRYYFKIMTEQYKLVPR--IEHFACLVDL  445 (571)
Q Consensus       381 ~~~a~~~~~~m~~~g~~p~~~-~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~  445 (571)
                      +++|+..|+++.+  ..|+.. .+..+            ...+...|++++|..+|+.+.+.....+.  ...+..++.+
T Consensus       227 ~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~  304 (450)
T 2y4t_A          227 HELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHC  304 (450)
T ss_dssp             HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            9999999998887  445433 44433            77888899999999999998875221111  3478888999


Q ss_pred             HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH------------
Q 008276          446 LGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI------------  511 (571)
Q Consensus       446 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~------------  511 (571)
                      +.+.|++++|...++++ ...| +..+|..+..+|...|++++|...+++++++.|+++.++..++.+            
T Consensus       305 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~  384 (450)
T 2y4t_A          305 FSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDY  384 (450)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhH
Confidence            99999999999999887 4445 678899999999999999999999999999999999998888844            


Q ss_pred             HHhcC-----CHHHHHHHHHH
Q 008276          512 YAKAG-----RWGDVKRVRKF  527 (571)
Q Consensus       512 ~~~~g-----~~~~A~~~~~~  527 (571)
                      |...|     +.+++.+.+++
T Consensus       385 y~~lg~~~~~~~~~~~~~y~~  405 (450)
T 2y4t_A          385 YKILGVKRNAKKQEIIKAYRK  405 (450)
T ss_dssp             GGGSCSSTTCCTTHHHHHHHH
T ss_pred             HHHhCCCccCCHHHHHHHHHH
Confidence            44445     55667777765

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.92  E-value=2.9e-22  Score=200.35  Aligned_cols=358  Identities=11%  Similarity=-0.025  Sum_probs=243.4

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCC---CCchhHHHHHHHHHhCC
Q 008276          134 PCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS---KDVVTWNSMVAGYAQNG  210 (571)
Q Consensus       134 ~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g  210 (571)
                      ..+...+.+.|++++|..+++.+++.. +.+..++..+..++...|++++|...|+++.+   .+..++..+..++.+.|
T Consensus        30 ~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  108 (450)
T 2y4t_A           30 LELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQG  108 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence            333333344444444444444443332 22334444444444444444444444444332   23445566666666666


Q ss_pred             CchHHHHHHHHHHHCCCCCCH----HHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHH
Q 008276          211 RFDEALDVCREMESLRIKPDA----DTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDL  286 (571)
Q Consensus       211 ~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  286 (571)
                      ++++|...|+++.+.  .|+.    ..+..+...+.                     ...+..+...+...|++++|+.+
T Consensus       109 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~a~~~~~~~~~~~A~~~  165 (450)
T 2y4t_A          109 KLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDE---------------------MQRLRSQALNAFGSGDYTAAIAF  165 (450)
T ss_dssp             CHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHH---------------------HHHHHHHHHHHHHcCCHHHHHHH
Confidence            666666666666553  2332    22222221110                     12244556678889999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-
Q 008276          287 YLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--Q-  363 (571)
Q Consensus       287 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-  363 (571)
                      |+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+.+.+  | 
T Consensus       166 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  243 (450)
T 2y4t_A          166 LDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD  243 (450)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            99998754 4567888889999999999999999999998765 55678888999999999999999999998864  3 


Q ss_pred             ChhHHHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 008276          364 DVVSWTSM------------ISAYGMSGQGYDAVALFSKMLMSGLCPD-----SIAFVSVLSACSHAGLLEEGRYYFKIM  426 (571)
Q Consensus       364 ~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~  426 (571)
                      +...+..+            ...+.+.|++++|...|+++.+  ..|+     ...+..+...+.+.|++++|...++.+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  321 (450)
T 2y4t_A          244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV  321 (450)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34445444            7889999999999999999998  4555     347888889999999999999999999


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH------------HHhcC-----CHHHH
Q 008276          427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAA------------CCLYS-----NMDIG  487 (571)
Q Consensus       427 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~------------~~~~g-----~~~~A  487 (571)
                      .+.  .+.+...|..+..+|...|++++|...++++ ...| +...+..+..+            |...|     +.+++
T Consensus       322 ~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~  399 (450)
T 2y4t_A          322 LQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEI  399 (450)
T ss_dssp             HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHH
T ss_pred             HHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHH
Confidence            874  3456788999999999999999999999988 6667 45666666533            33344     66788


Q ss_pred             HHHHHH-HHhhCCCCch----------hHHHHHHHHHhcCCHHHH
Q 008276          488 ILAADH-IFHLAPNQSG----------YYVLLSNIYAKAGRWGDV  521 (571)
Q Consensus       488 ~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~A  521 (571)
                      .+.|++ +.+..|++..          .+..+..+|...|+.+.+
T Consensus       400 ~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r  444 (450)
T 2y4t_A          400 IKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR  444 (450)
T ss_dssp             HHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred             HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            888886 6666665422          445566666666655443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.92  E-value=5.2e-22  Score=203.32  Aligned_cols=442  Identities=10%  Similarity=0.004  Sum_probs=332.5

Q ss_pred             ccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC---CChhhHHHHHH
Q 008276           27 TLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN---KNVVFFNVLIR  103 (571)
Q Consensus        27 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~  103 (571)
                      ....+..++..+.+.|++++|...|..++ +.. +.++..+..+..+|...|++++|++.|+.+..   .+...|..+..
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  101 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAI-ELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS  101 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHH-HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHH-hhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            34566788999999999999999999999 665 45789999999999999999999999998753   46778999999


Q ss_pred             HHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhCCCH
Q 008276          104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG--LDYNLFNGNGLVAMYGKCGCL  181 (571)
Q Consensus       104 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~  181 (571)
                      .+...|++++|+..|+.+..   .|+...  ..+..+...+....+...++.+....  ..+........+..+....+.
T Consensus       102 ~~~~~g~~~~A~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (537)
T 3fp2_A          102 ANESLGNFTDAMFDLSVLSL---NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS  176 (537)
T ss_dssp             HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred             HHHHcCCHHHHHHHHHHHhc---CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence            99999999999999974432   233221  12333344455677888888875531  111111223345556778888


Q ss_pred             HHHHHHHccCCCCCch---hHHHHHHHHHhC--------CCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCccH
Q 008276          182 KEARRVLNDMPSKDVV---TWNSMVAGYAQN--------GRFDEALDVCREMESLRIKPDA-DTMASLLPSVTNTSPENV  249 (571)
Q Consensus       182 ~~A~~~~~~~~~~~~~---~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~  249 (571)
                      +.+...+......+..   ....+...+...        |++++|..+++++.+.  .|+. ..+..+            
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~------------  242 (537)
T 3fp2_A          177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENA------------  242 (537)
T ss_dssp             HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHH------------
T ss_pred             HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHH------------
Confidence            8888888777764433   333333333222        4788888888888764  2331 111111            


Q ss_pred             HHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcC
Q 008276          250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKK  329 (571)
Q Consensus       250 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  329 (571)
                                    ..++..+...+...|++++|...++++.+.  .|+...+..+...+...|+++.|...++.+.+..
T Consensus       243 --------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  306 (537)
T 3fp2_A          243 --------------ALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN  306 (537)
T ss_dssp             --------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC
T ss_pred             --------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Confidence                          234667778899999999999999999885  4668888899999999999999999999999876


Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008276          330 LQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSV  406 (571)
Q Consensus       330 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  406 (571)
                       +.+..++..+...+...|++++|...++.+.+   .+...|..+...+...|++++|...++++.+.. +.+...+..+
T Consensus       307 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l  384 (537)
T 3fp2_A          307 -PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFF  384 (537)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence             45678899999999999999999999998864   356789999999999999999999999999852 3356688889


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHhc----------CCHHHHHHHHHhC-CCCC-CHHH
Q 008276          407 LSACSHAGLLEEGRYYFKIMTEQYKLVP----RIEHFACLVDLLGRA----------GKVEEAYDLIKQM-PMEP-NERI  470 (571)
Q Consensus       407 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~  470 (571)
                      ...+...|++++|...|+++.+.....+    ....+..+...+...          |++++|...|+++ ...| +..+
T Consensus       385 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  464 (537)
T 3fp2_A          385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQA  464 (537)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHH
Confidence            9999999999999999999876522222    223345566778888          9999999999988 4344 6788


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 008276          471 WGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL  507 (571)
Q Consensus       471 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  507 (571)
                      +..+...+...|++++|...|+++.++.|.+......
T Consensus       465 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  501 (537)
T 3fp2_A          465 KIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA  501 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            9999999999999999999999999999988766543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.87  E-value=2.5e-19  Score=173.01  Aligned_cols=310  Identities=12%  Similarity=0.041  Sum_probs=184.1

Q ss_pred             hHHHHHHHHHHhCCCHHHHHHHHccCCC---CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 008276          166 FNGNGLVAMYGKCGCLKEARRVLNDMPS---KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT  242 (571)
Q Consensus       166 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~  242 (571)
                      ..+..+...+...|++++|...|+.+.+   .+..++..+...+...|++++|+..++++.+.  .|+            
T Consensus         4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~------------   69 (359)
T 3ieg_A            4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMD------------   69 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCC------------
Confidence            3444455555556666666666555432   23445666666666666666666666666542  122            


Q ss_pred             CCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCC----CHHHHHHH------------H
Q 008276          243 NTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEP----NAISVASV------------L  306 (571)
Q Consensus       243 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~l------------l  306 (571)
                                          +...+..+...+...|++++|...|+++.+.  .|    +...+..+            .
T Consensus        70 --------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a  127 (359)
T 3ieg_A           70 --------------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQA  127 (359)
T ss_dssp             --------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------cchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHH
Confidence                                2344556666666667777777777666653  23    22222222            3


Q ss_pred             HHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHH
Q 008276          307 PACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYD  383 (571)
Q Consensus       307 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~  383 (571)
                      ..+...|++++|...++.+.+.. +.+...+..+..++...|++++|...++.+.+   .+...+..+...+...|++++
T Consensus       128 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  206 (359)
T 3ieg_A          128 LDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL  206 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            45566677777777777666654 34556666666677777777777777666543   345566677777777777777


Q ss_pred             HHHHHHHHHHCCCCCCH-HHHH------------HHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHh
Q 008276          384 AVALFSKMLMSGLCPDS-IAFV------------SVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI--EHFACLVDLLGR  448 (571)
Q Consensus       384 a~~~~~~m~~~g~~p~~-~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~  448 (571)
                      |...+++..+.  .|+. ..+.            .+...+...|++++|...++.+.+.....+..  ..+..+...+..
T Consensus       207 A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  284 (359)
T 3ieg_A          207 SLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSK  284 (359)
T ss_dssp             HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence            77777776663  3332 2222            22445666777777777777766542111111  224445666677


Q ss_pred             cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 008276          449 AGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK  514 (571)
Q Consensus       449 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  514 (571)
                      .|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++.+|+++.++..+..++..
T Consensus       285 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  352 (359)
T 3ieg_A          285 DEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL  352 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            77777777777666 3234 566666677777777777777777777777777777666666555443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.87  E-value=3e-19  Score=172.49  Aligned_cols=300  Identities=12%  Similarity=0.036  Sum_probs=249.7

Q ss_pred             CchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHH
Q 008276          195 DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVY  274 (571)
Q Consensus       195 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~  274 (571)
                      ++..+..+...+...|++++|+..|+++.+.  .|+                                +...+..+...+
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~--------------------------------~~~~~~~~a~~~   47 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPD--------------------------------NYIAYYRRATVF   47 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT--------------------------------CHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccc--------------------------------cHHHHHHHHHHH
Confidence            3456778889999999999999999998763  232                                456788889999


Q ss_pred             HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCC--CChhHHHHH------------
Q 008276          275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ--PNLRLENAL------------  340 (571)
Q Consensus       275 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------  340 (571)
                      ...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+....  .+...+..+            
T Consensus        48 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  126 (359)
T 3ieg_A           48 LAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQ  126 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998764 346688889999999999999999999999987520  244444444            


Q ss_pred             HHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHH
Q 008276          341 VDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE  417 (571)
Q Consensus       341 ~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~  417 (571)
                      ...+...|++++|...++.+.+   .+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|+++
T Consensus       127 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~  205 (359)
T 3ieg_A          127 ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHE  205 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHH
Confidence            5788999999999999998764   46778999999999999999999999999985 2346678999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHH
Q 008276          418 EGRYYFKIMTEQYKLVPRIEHFA------------CLVDLLGRAGKVEEAYDLIKQM-PMEPN-E----RIWGSLVAACC  479 (571)
Q Consensus       418 ~a~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~  479 (571)
                      +|...++.+.+..  +.+...+.            .+...+.+.|++++|.+.++++ ...|+ .    ..+..+...+.
T Consensus       206 ~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  283 (359)
T 3ieg_A          206 LSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS  283 (359)
T ss_dssp             HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence            9999999998752  23333332            3367789999999999999987 33443 3    23556778899


Q ss_pred             hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       480 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      ..|++++|+..++++.+..|+++.++..++.+|...|++++|...+++..+..
T Consensus       284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  336 (359)
T 3ieg_A          284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN  336 (359)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999998764

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.84  E-value=2.4e-18  Score=164.11  Aligned_cols=288  Identities=14%  Similarity=0.032  Sum_probs=206.7

Q ss_pred             CchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHH
Q 008276          195 DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVY  274 (571)
Q Consensus       195 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~  274 (571)
                      +...+..++..+...|++++|+++|+++.+..  |+                                +...+..++.++
T Consensus        21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~--------------------------------~~~~~~~~~~~~   66 (330)
T 3hym_B           21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PF--------------------------------HASCLPVHIGTL   66 (330)
T ss_dssp             CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------------------------------CTTTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC--------------------------------ChhhHHHHHHHH
Confidence            44555666666666677777777776665431  21                                234455555666


Q ss_pred             HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 008276          275 ANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS-ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA  353 (571)
Q Consensus       275 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  353 (571)
                      ...|++++|..+++++.+.. +.+...+..+...+...| ++++|...++.+.+.. +.+...+..+..++...|++++|
T Consensus        67 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A  144 (330)
T 3hym_B           67 VELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQA  144 (330)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHH
Confidence            66777777777777766543 334556666666666677 6777777777776654 34456667777777777888888


Q ss_pred             HHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 008276          354 RTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY  430 (571)
Q Consensus       354 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  430 (571)
                      ...++.+.+   .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus       145 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  223 (330)
T 3hym_B          145 MAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI  223 (330)
T ss_dssp             HHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence            777777653   345667778888888888888888888888742 3355678888888888899999999888887642


Q ss_pred             C-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 008276          431 K-------LVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ  501 (571)
Q Consensus       431 ~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  501 (571)
                      .       .+.....+..+..++...|++++|.+.++++ ...| +...|..+...+...|++++|...++++.+..|++
T Consensus       224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  303 (330)
T 3hym_B          224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD  303 (330)
T ss_dssp             TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC
T ss_pred             hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc
Confidence            1       1334578888899999999999999998887 3334 56788888889999999999999999999999999


Q ss_pred             chhHHHHHHHHH-hcCCHH
Q 008276          502 SGYYVLLSNIYA-KAGRWG  519 (571)
Q Consensus       502 ~~~~~~l~~~~~-~~g~~~  519 (571)
                      +.++..++.++. ..|+.+
T Consensus       304 ~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          304 TFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHHHHHTTTTC--
T ss_pred             hHHHHHHHHHHHHHhCchh
Confidence            999999998884 556543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.83  E-value=2.4e-18  Score=164.09  Aligned_cols=266  Identities=10%  Similarity=-0.028  Sum_probs=230.2

Q ss_pred             CChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 008276          262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV  341 (571)
Q Consensus       262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  341 (571)
                      .+...+..++..+...|++++|..+|+++.+.. +.+...+..++.++...|++++|...++.+.+.. +.+...+..+.
T Consensus        20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~   97 (330)
T 3hym_B           20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG   97 (330)
T ss_dssp             CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence            456778888999999999999999999998764 3445566667788889999999999999999875 55678888899


Q ss_pred             HHHHhcC-CHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHH
Q 008276          342 DMYAKCG-SLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE  417 (571)
Q Consensus       342 ~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~  417 (571)
                      ..+...| ++++|...|+.+.+   .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|+++
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~  176 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK  176 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence            9999999 99999999998764   356789999999999999999999999999852 224567777899999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCCHHH
Q 008276          418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PM----------EPNERIWGSLVAACCLYSNMDI  486 (571)
Q Consensus       418 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~g~~~~  486 (571)
                      +|...++++.+.  .+.+...+..+...+...|++++|...++++ ..          .....+|..+...+...|++++
T Consensus       177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  254 (330)
T 3hym_B          177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE  254 (330)
T ss_dssp             HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence            999999999863  3556788999999999999999999999877 11          2346788999999999999999


Q ss_pred             HHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          487 GILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       487 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      |+..++++.+..|++..++..++.+|.+.|++++|.+.+++..+..
T Consensus       255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  300 (330)
T 3hym_B          255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR  300 (330)
T ss_dssp             HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred             HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence            9999999999999999999999999999999999999999876543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.83  E-value=1.1e-16  Score=161.44  Aligned_cols=366  Identities=11%  Similarity=-0.012  Sum_probs=244.1

Q ss_pred             ChhhHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhc----CCChHHHHHHHHHHHHhCCCCch
Q 008276           94 NVVFFNVLIRSYVN----NYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG----SNSLLVGLQIHCSVVKVGLDYNL  165 (571)
Q Consensus        94 ~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~  165 (571)
                      +...+..+...|..    .+++++|+..|++..+.|   +...+..+...+..    .+++++|.+.+++..+.|   +.
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~  111 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP  111 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence            34444444444444    455555555555555432   33344444444444    555555555555555543   33


Q ss_pred             hHHHHHHHHHHh----CCCHHHHHHHHccCCC-CCchhHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 008276          166 FNGNGLVAMYGK----CGCLKEARRVLNDMPS-KDVVTWNSMVAGYAQ----NGRFDEALDVCREMESLRIKPDADTMAS  236 (571)
Q Consensus       166 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~  236 (571)
                      ..+..|...|..    .+++++|...|+...+ .+...+..+...|..    .+++++|++.|++..+.|          
T Consensus       112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~----------  181 (490)
T 2xm6_A          112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG----------  181 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----------
Confidence            444445555555    5566666666655443 244455556666655    567777777777765532          


Q ss_pred             HHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHH----cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc-
Q 008276          237 LLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYAN----NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD-  311 (571)
Q Consensus       237 ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~-  311 (571)
                                                +..++..+...|..    .+++++|..+|++..+.|   +...+..+...+.. 
T Consensus       182 --------------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g  232 (490)
T 2xm6_A          182 --------------------------NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFG  232 (490)
T ss_dssp             --------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred             --------------------------CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence                                      23445556666666    677888888888777654   34455555555543 


Q ss_pred             ---CCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHhc-----
Q 008276          312 ---LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK----CGSLTEARTVFDQMRC-QDVVSWTSMISAYGMS-----  378 (571)
Q Consensus       312 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~-----  378 (571)
                         .+++++|...|+...+.+   +...+..+...|..    .++.++|...|+...+ .+...+..+...|...     
T Consensus       233 ~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~  309 (490)
T 2xm6_A          233 IGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVA  309 (490)
T ss_dssp             SSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBC
T ss_pred             CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCc
Confidence               677888888888777654   34455556666666    7888888888887764 4666777788888777     


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCC
Q 008276          379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG---LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR----AGK  451 (571)
Q Consensus       379 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~  451 (571)
                      +++++|+..|++..+.|   +...+..+...+...|   ++++|.++|++..+.    .+...+..+...|..    .++
T Consensus       310 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~  382 (490)
T 2xm6_A          310 KNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKD  382 (490)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCC
T ss_pred             CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCC
Confidence            89999999999988864   4456666777776656   788999999998874    467778888888888    789


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC---CchhHHHHHHHHHh
Q 008276          452 VEEAYDLIKQMPMEPNERIWGSLVAACCL----YSNMDIGILAADHIFHLAPN---QSGYYVLLSNIYAK  514 (571)
Q Consensus       452 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~  514 (571)
                      +++|.+.|++.-...++..+..+...|..    .+++++|...|+++.+.+|+   ++.+...++.++..
T Consensus       383 ~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~  452 (490)
T 2xm6_A          383 EQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK  452 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence            99999999987223367788888888887    89999999999999999854   67677777665544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.82  E-value=8.7e-19  Score=170.04  Aligned_cols=298  Identities=11%  Similarity=-0.019  Sum_probs=204.4

Q ss_pred             HHhCCCHHHHHH-HHccCCC--C-----CchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCC
Q 008276          175 YGKCGCLKEARR-VLNDMPS--K-----DVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSP  246 (571)
Q Consensus       175 ~~~~g~~~~A~~-~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~  246 (571)
                      +...|++++|.. .|++...  +     +...+..+...+...|++++|+..|+++.+.  .|+                
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~----------------   96 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPK----------------   96 (368)
T ss_dssp             -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTT----------------
T ss_pred             hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC----------------
Confidence            334467777776 6665443  1     2445666777777777777777777777653  222                


Q ss_pred             ccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHH
Q 008276          247 ENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVE  326 (571)
Q Consensus       247 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  326 (571)
                                      +..++..+..++...|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.
T Consensus        97 ----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  159 (368)
T 1fch_A           97 ----------------HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWL  159 (368)
T ss_dssp             ----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ----------------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                            34567777777777777777777777776653 3355666666666777777777777777766


Q ss_pred             HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHH
Q 008276          327 RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD---SIAF  403 (571)
Q Consensus       327 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~  403 (571)
                      +... .+...+..+...       ..       ...+ ...+..+... ...|++++|...|+++.+.  .|+   ..++
T Consensus       160 ~~~~-~~~~~~~~~~~~-------~~-------~~~~-~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~  220 (368)
T 1fch_A          160 RYTP-AYAHLVTPAEEG-------AG-------GAGL-GPSKRILGSL-LSDSLFLEVKELFLAAVRL--DPTSIDPDVQ  220 (368)
T ss_dssp             HTST-TTGGGCC------------------------------CTTHHH-HHHHHHHHHHHHHHHHHHH--STTSCCHHHH
T ss_pred             HhCc-CcHHHHHHHHHH-------hh-------hhcc-cHHHHHHHHH-hhcccHHHHHHHHHHHHHh--CcCcccHHHH
Confidence            6542 111111111000       00       0000 0111122333 3889999999999999884  444   6788


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 008276          404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLY  481 (571)
Q Consensus       404 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~  481 (571)
                      ..+...+...|++++|...++++.+.  .+.+...+..+...+...|++++|.+.++++ ...| +..++..+...+...
T Consensus       221 ~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~  298 (368)
T 1fch_A          221 CGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL  298 (368)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            89999999999999999999999874  3445788999999999999999999999987 4444 678899999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCC-----------chhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276          482 SNMDIGILAADHIFHLAPNQ-----------SGYYVLLSNIYAKAGRWGDVKRVRKFM  528 (571)
Q Consensus       482 g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m  528 (571)
                      |++++|...++++.+..|++           ..+|..++.+|...|++++|..++++.
T Consensus       299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  356 (368)
T 1fch_A          299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD  356 (368)
T ss_dssp             TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence            99999999999999998877           789999999999999999999987643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.81  E-value=4.6e-15  Score=156.82  Aligned_cols=452  Identities=14%  Similarity=0.062  Sum_probs=329.4

Q ss_pred             cccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccC------------CC
Q 008276           26 YTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT------------NK   93 (571)
Q Consensus        26 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------~~   93 (571)
                      ......+.|+...-+..++.....+++... ..|. .++.++|+|+..|...++-.  .+.+.+-.            ++
T Consensus       837 ~~~~~~~~lv~~~ekrnrLkll~p~LE~~~-~~g~-~~~~~hnalakiyid~n~np--e~fL~~n~~yd~~~vgkyce~r  912 (1630)
T 1xi4_A          837 RGQFSTDELVAEVEKRNRLKLLLPWLEARI-HEGC-EEPATHNALAKIYIDSNNNP--ERFLRENPYYDSRVVGKYCEKR  912 (1630)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHHHH-hCCC-CCHHHHHHHHHHHhccCCCH--HHHhhccCcccHHHHHHHHHhc
Confidence            456667788888888888888888888888 6674 49999999999999765322  22222211            11


Q ss_pred             Chh-----------------------hHHHHHHHHHHcCChhHHHHH-----------HHHHHhCC--CCCCcccHHHHH
Q 008276           94 NVV-----------------------FFNVLIRSYVNNYLYYDALHV-----------YKNMSVHG--FDPDCYTYPCVL  137 (571)
Q Consensus        94 ~~~-----------------------~~~~li~~~~~~~~~~~A~~~-----------~~~m~~~g--~~p~~~~~~~li  137 (571)
                      |+.                       .|....+-+.+..+.+-=-.+           .++-....  -.-++.--...+
T Consensus       913 Dp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~v  992 (1630)
T 1xi4_A          913 DPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTV  992 (1630)
T ss_pred             CcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHH
Confidence            211                       122233333333332211111           11111000  012333345577


Q ss_pred             HHhhcCCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHH
Q 008276          138 KACSGSNSLLVGLQIHCSVVKVG--LDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEA  215 (571)
Q Consensus       138 ~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  215 (571)
                      ++|...|.+.++.++++...-.+  +..+....+.++.+..+. +..+...+.+....-+   ...+...+...|.+++|
T Consensus       993 Kaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEA 1068 (1630)
T 1xi4_A          993 KAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEA 1068 (1630)
T ss_pred             HHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHH
Confidence            88888999999999999888432  123445666677766666 5566666666655333   44577888999999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCC
Q 008276          216 LDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI  295 (571)
Q Consensus       216 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~  295 (571)
                      ..+|++..     -.....+.++.....     +++|.++.++..  +..+|..+..++.+.|++++|++.|.+.     
T Consensus      1069 f~IYkKa~-----~~~~A~~VLie~i~n-----ldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA----- 1131 (1630)
T 1xi4_A         1069 FAIFRKFD-----VNTSAVQVLIEHIGN-----LDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA----- 1131 (1630)
T ss_pred             HHHHHHcC-----CHHHHHHHHHHHHhh-----HHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----
Confidence            99999862     222233444443322     888888888775  4778999999999999999999999653     


Q ss_pred             CCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHH
Q 008276          296 EPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAY  375 (571)
Q Consensus       296 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~  375 (571)
                       -|...|..++.+|.+.|+++++.+++....+..  ++....+.++.+|++.+++++...+.   ..++...|..+...|
T Consensus      1132 -dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A         1132 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRC 1205 (1630)
T ss_pred             -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHH
Confidence             567888899999999999999999999988765  33333445899999999999655553   456777788899999


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008276          376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA  455 (571)
Q Consensus       376 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  455 (571)
                      ...|++++|..+|...         ..|..+...+.+.|++++|.+.+++.       .+..+|..+..++...|++..|
T Consensus      1206 e~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A         1206 YDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred             HhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHH
Confidence            9999999999999985         37999999999999999999999877       3558899999999999999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc--CCHHHHHHHHH
Q 008276          456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA--GRWGDVKRVRK  526 (571)
Q Consensus       456 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~  526 (571)
                      ......+  ..++..+..++..|.+.|.+++|+.+++.++.++|.+...|..++.+|.+.  ++..++.++|.
T Consensus      1270 ~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A         1270 QMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred             HHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            8877654  456667779999999999999999999999999999999998888887764  56666666655

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.81  E-value=7.7e-16  Score=155.21  Aligned_cols=362  Identities=13%  Similarity=0.006  Sum_probs=293.3

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHhhc----CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----CCCHHHHH
Q 008276          114 ALHVYKNMSVHGFDPDCYTYPCVLKACSG----SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGK----CGCLKEAR  185 (571)
Q Consensus       114 A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~  185 (571)
                      ++..+++..+.|   +...+..+...+..    .+++++|...++...+.|   +...+..|...|..    .+++++|.
T Consensus        26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~   99 (490)
T 2xm6_A           26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV   99 (490)
T ss_dssp             CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            345555555543   55666666666666    789999999999998865   56677888888888    89999999


Q ss_pred             HHHccCCC-CCchhHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCC
Q 008276          186 RVLNDMPS-KDVVTWNSMVAGYAQ----NGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLD  260 (571)
Q Consensus       186 ~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~  260 (571)
                      ..|++..+ .+...+..|...|..    .+++++|+..|++..+.|                                  
T Consensus       100 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----------------------------------  145 (490)
T 2xm6_A          100 IWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----------------------------------  145 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------------------------------
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----------------------------------
Confidence            99988765 466677778888887    788999999998887653                                  


Q ss_pred             CCChhhHHHHHHHHHH----cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc----CCchHHHHHHHHHHHHcCCCC
Q 008276          261 NKNLVSWNVMIAVYAN----NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD----LSALLLGRKIHRYVERKKLQP  332 (571)
Q Consensus       261 ~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~  332 (571)
                        +..++..|...|..    .+++++|+++|++..+.|   +...+..+...+..    .+++++|...|+...+.+   
T Consensus       146 --~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---  217 (490)
T 2xm6_A          146 --RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---  217 (490)
T ss_dssp             --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred             --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---
Confidence              24556667777776    789999999999998865   56677777777766    899999999999999875   


Q ss_pred             ChhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHH
Q 008276          333 NLRLENALVDMYAK----CGSLTEARTVFDQMRC-QDVVSWTSMISAYGM----SGQGYDAVALFSKMLMSGLCPDSIAF  403 (571)
Q Consensus       333 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~  403 (571)
                      +...+..+...|..    .+++++|..+|+...+ .+...+..+...|..    .+++++|+.+|++..+.|   +...+
T Consensus       218 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~  294 (490)
T 2xm6_A          218 DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQ  294 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHH
Confidence            45667778888876    7899999999998765 567778888888888    899999999999998864   45567


Q ss_pred             HHHHHHhhcC-----CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHH
Q 008276          404 VSVLSACSHA-----GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG---KVEEAYDLIKQMPMEPNERIWGSLV  475 (571)
Q Consensus       404 ~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~  475 (571)
                      ..+...+...     +++++|...|++..+.    .+...+..+...|...|   +.++|.+.|++.-...++..+..+.
T Consensus       295 ~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg  370 (490)
T 2xm6_A          295 YYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLG  370 (490)
T ss_dssp             HHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            7777777776     8999999999999874    35567778888888766   7899999999882235788888899


Q ss_pred             HHHHh----cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 008276          476 AACCL----YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK----AGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       476 ~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~  532 (571)
                      ..|..    .+++++|+..|+++.+.+  ++.++..++.+|.+    .+++++|...+++..+.+
T Consensus       371 ~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          371 NALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            99988    899999999999998865  57899999999998    899999999999998876

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.81  E-value=6.8e-15  Score=155.53  Aligned_cols=412  Identities=12%  Similarity=0.056  Sum_probs=300.1

Q ss_pred             hccccccCChhHHHHHHhhCCChHHHHHHHHHHHHhhc--CCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHH
Q 008276           22 LSTQYTLLSGDACNDILDKYPDIKTLKKLHAQIIINQH--LHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFN   99 (571)
Q Consensus        22 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~   99 (571)
                      +...-.+......++++...|.+.+|.++++++. ..+  +..+....+.|+....+. +..+..+..+....-+   ..
T Consensus       979 L~e~~~PeeVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~ 1053 (1630)
T 1xi4_A          979 LSETQDPEEVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---AP 1053 (1630)
T ss_pred             cccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HH
Confidence            3334444555667888889999999999999998 332  123456667777777766 4455555555444222   55


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 008276          100 VLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG  179 (571)
Q Consensus       100 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g  179 (571)
                      .+...+...|.+++|..+|++...     .....+.++.   ..+++++|.++.++.      -+..+|..+..++...|
T Consensus      1054 eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A         1054 DIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCC
Confidence            588899999999999999999631     1222233332   678899999998855      35788899999999999


Q ss_pred             CHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhC
Q 008276          180 CLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKL  259 (571)
Q Consensus       180 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~  259 (571)
                      ++++|+..|.+.  .|...|..++.++.+.|++++|.+.|...++..  ++....+.+..++++.+.  ++......   
T Consensus      1120 ~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~r--leele~fI--- 1190 (1630)
T 1xi4_A         1120 MVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNR--LAELEEFI--- 1190 (1630)
T ss_pred             CHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcC--HHHHHHHH---
Confidence            999999999765  677888999999999999999999999887754  333233347777887765  66554443   


Q ss_pred             CCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHH
Q 008276          260 DNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENA  339 (571)
Q Consensus       260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  339 (571)
                      ..++...|..+...|...|++++|..+|...         ..|..+..++.+.|+++.|.+.++..      .+..+|..
T Consensus      1191 ~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWke 1255 (1630)
T 1xi4_A         1191 NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 1255 (1630)
T ss_pred             hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHH
Confidence            4556677888999999999999999999884         48889999999999999999999876      45688888


Q ss_pred             HHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcC--CCH
Q 008276          340 LVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD-SIAFVSVLSACSHA--GLL  416 (571)
Q Consensus       340 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~--~~~  416 (571)
                      +..+|...|++..|...... ...+...+..++..|.+.|.+++|+.+++.....  .+. ...|.-+...+++.  ++.
T Consensus      1256 v~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A         1256 VCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred             HHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHH
Confidence            88899999999999988775 3345666778999999999999999999887763  343 33666666655553  344


Q ss_pred             HHHHHHHHHHHHhcCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHhC--------------CCCCCHHHHHHHHH
Q 008276          417 EEGRYYFKIMTEQYKLVP------RIEHFACLVDLLGRAGKVEEAYDLIKQM--------------PMEPNERIWGSLVA  476 (571)
Q Consensus       417 ~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------------~~~p~~~~~~~l~~  476 (571)
                      .++.+.|.   .+.++++      +...|.-++..|.+.|+++.|....-+-              ....++..|--.+.
T Consensus      1333 mEhlk~f~---~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~ 1409 (1630)
T 1xi4_A         1333 REHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQ 1409 (1630)
T ss_pred             HHHHHHHH---HhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHH
Confidence            44444444   3324444      4577999999999999999998433222              12235556655555


Q ss_pred             HHHhcC
Q 008276          477 ACCLYS  482 (571)
Q Consensus       477 ~~~~~g  482 (571)
                      -|....
T Consensus      1410 Fyl~~~ 1415 (1630)
T 1xi4_A         1410 FYLEFK 1415 (1630)
T ss_pred             HHHhhC
Confidence            555443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.80  E-value=5e-18  Score=160.97  Aligned_cols=291  Identities=9%  Similarity=0.055  Sum_probs=113.0

Q ss_pred             HHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhH
Q 008276           34 CNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYD  113 (571)
Q Consensus        34 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  113 (571)
                      +..++.+.|++++|.+.++++.       ++.+|..|+.++.+.|++++|++.|.+.  +|...|..++..+...|++++
T Consensus         9 ~~~ll~~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~Ee   79 (449)
T 1b89_A            9 VQVLIEHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEE   79 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHH
Confidence            4455667888999999998774       3458899999999999999999999654  566789999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCC
Q 008276          114 ALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS  193 (571)
Q Consensus       114 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  193 (571)
                      |+..++..++.  .+++.+.+.++.+|.+.|++.++.++++       .|+..+|..+...|...|.+++|..+|..+  
T Consensus        80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--  148 (449)
T 1b89_A           80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--  148 (449)
T ss_dssp             -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred             HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence            99977766663  4567888889999999999999888874       467779999999999999999999999877  


Q ss_pred             CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHH
Q 008276          194 KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAV  273 (571)
Q Consensus       194 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~  273 (571)
                         ..|..++.++.+.|++++|.+.+.++      .++.+|..++.+|...++  ++.|......+. .++.....++..
T Consensus       149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~e--f~lA~~~~l~L~-~~ad~l~~lv~~  216 (449)
T 1b89_A          149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKE--FRLAQMCGLHIV-VHADELEELINY  216 (449)
T ss_dssp             ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTC--HHHHHHTTTTTT-TCHHHHHHHHHH
T ss_pred             ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCc--HHHHHHHHHHHH-hCHhhHHHHHHH
Confidence               47899999999999999999999888      266777777777777776  666655555443 344445556777


Q ss_pred             HHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC--CchHHHHHHHHHHHHcCCCC------ChhHHHHHHHHHH
Q 008276          274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL--SALLLGRKIHRYVERKKLQP------NLRLENALVDMYA  345 (571)
Q Consensus       274 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~  345 (571)
                      |.+.|++++|+.+++...... +-....|+-+...+++-  ++..+..+.|..  +.+++|      +...|.-+...|.
T Consensus       217 Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~  293 (449)
T 1b89_A          217 YQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYD  293 (449)
T ss_dssp             HHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777765433 33344454444444333  333333333321  122222      3445666666666


Q ss_pred             hcCCHHHHHHHHhh
Q 008276          346 KCGSLTEARTVFDQ  359 (571)
Q Consensus       346 ~~~~~~~a~~~~~~  359 (571)
                      .-++++.|....-+
T Consensus       294 ~~~e~d~A~~tm~~  307 (449)
T 1b89_A          294 KYEEYDNAIITMMN  307 (449)
T ss_dssp             HTTCHHHHHHHHHH
T ss_pred             hhchHHHHHHHHHh
Confidence            66777666654433

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.80  E-value=4.6e-16  Score=158.54  Aligned_cols=410  Identities=9%  Similarity=0.011  Sum_probs=286.5

Q ss_pred             ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 008276           94 NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVA  173 (571)
Q Consensus        94 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~  173 (571)
                      |...|..++. +.+.|++++|..+|+++.+. .+.+...|...+..+.+.|+++.|..+|++++...  |+...|..++.
T Consensus        12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~   87 (530)
T 2ooe_A           12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS   87 (530)
T ss_dssp             CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred             CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence            6778888888 47889999999999999875 34455678888888889999999999999998764  57777777775


Q ss_pred             HH-HhCCCHHHHHH----HHccCC-----C-CCchhHHHHHHHHHh---------CCCchHHHHHHHHHHHCCCCCCHHH
Q 008276          174 MY-GKCGCLKEARR----VLNDMP-----S-KDVVTWNSMVAGYAQ---------NGRFDEALDVCREMESLRIKPDADT  233 (571)
Q Consensus       174 ~~-~~~g~~~~A~~----~~~~~~-----~-~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~p~~~t  233 (571)
                      .. ...|++++|.+    +|+...     . ++...|...+.....         .|+++.|..+|++..+....+....
T Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~  167 (530)
T 2ooe_A           88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL  167 (530)
T ss_dssp             HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred             HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence            33 45677766654    565432     1 345677777776554         6788899999998887211111122


Q ss_pred             HHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHH------HCC---CCCC------
Q 008276          234 MASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME------VHG---IEPN------  298 (571)
Q Consensus       234 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~------~~g---~~~~------  298 (571)
                      |..........                  +..+...++.  ...+++..|..++.++.      +..   ++|+      
T Consensus       168 ~~~~~~~e~~~------------------~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~  227 (530)
T 2ooe_A          168 WRDYNKYEEGI------------------NIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA  227 (530)
T ss_dssp             HHHHHHHHHHH------------------CHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred             HHHHHHHHHhh------------------chhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence            22211100000                  0000111111  12345666776666532      211   2343      


Q ss_pred             --HHHHHHHHHHhcc----CCch----HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCCHH-------HHH
Q 008276          299 --AISVASVLPACGD----LSAL----LLGRKIHRYVERKKLQPNLRLENALVDMYAK-------CGSLT-------EAR  354 (571)
Q Consensus       299 --~~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~  354 (571)
                        ...|...+.....    .++.    ..+..+|+.+.... +.+...|..+...+.+       .|+++       +|.
T Consensus       228 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~  306 (530)
T 2ooe_A          228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA  306 (530)
T ss_dssp             HHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHH
Confidence              1344444332211    2233    36778888888764 5567888888887775       68876       899


Q ss_pred             HHHhhCCC---C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276          355 TVFDQMRC---Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS--IAFVSVLSACSHAGLLEEGRYYFKIMTE  428 (571)
Q Consensus       355 ~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~  428 (571)
                      .+|++..+   | +...|..++..+.+.|++++|..+|+++.+  +.|+.  ..|..++..+.+.|++++|..+|++..+
T Consensus       307 ~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~  384 (530)
T 2ooe_A          307 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE  384 (530)
T ss_dssp             HHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            99998764   4 567899999999999999999999999999  56653  4788888888889999999999999986


Q ss_pred             hcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch--
Q 008276          429 QYKLVPRIEHFACLVDL-LGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG--  503 (571)
Q Consensus       429 ~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~--  503 (571)
                      .  .+.+...|...+.. +...|+.++|..+|++. ...| +...|..++..+.+.|+.++|..+|++++...|.++.  
T Consensus       385 ~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~  462 (530)
T 2ooe_A          385 D--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS  462 (530)
T ss_dssp             C--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC
T ss_pred             c--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH
Confidence            4  12233434333322 34689999999999987 3345 6789999999999999999999999999998876655  


Q ss_pred             --hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          504 --YYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       504 --~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                        .|...+......|+.+.+..+.+++.+.-
T Consensus       463 ~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~  493 (530)
T 2ooe_A          463 GEIWARFLAFESNIGDLASILKVEKRRFTAF  493 (530)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence              78888888888999999999999887653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.80  E-value=3.6e-18  Score=165.48  Aligned_cols=261  Identities=9%  Similarity=-0.085  Sum_probs=218.8

Q ss_pred             ChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 008276          263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD  342 (571)
Q Consensus       263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  342 (571)
                      +...+..+...+.+.|++++|..+|+++.+.. +.+..++..+...+...|++++|...|+.+.+.. +.+..++..+..
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  141 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV  141 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            45668899999999999999999999998864 4577889999999999999999999999999876 556888999999


Q ss_pred             HHHhcCCHHHHHHHHhhCCC--CC-----------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 008276          343 MYAKCGSLTEARTVFDQMRC--QD-----------VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC-PDSIAFVSVLS  408 (571)
Q Consensus       343 ~~~~~~~~~~a~~~~~~~~~--~~-----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~  408 (571)
                      +|...|++++|...|+++.+  |+           ...+..+...+...|++++|+..|+++.+.... ++..++..+..
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  221 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV  221 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence            99999999999999998864  21           223445678899999999999999999985321 15778999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 008276          409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDI  486 (571)
Q Consensus       409 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~  486 (571)
                      .+...|++++|...|+++.+.  .+.+..++..+..+|...|++++|++.|+++ ...| +..+|..+...|...|++++
T Consensus       222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  299 (365)
T 4eqf_A          222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE  299 (365)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence            999999999999999999874  3456789999999999999999999999988 4455 58889999999999999999


Q ss_pred             HHHHHHHHHhhCCC------------CchhHHHHHHHHHhcCCHHHHHHHHHH
Q 008276          487 GILAADHIFHLAPN------------QSGYYVLLSNIYAKAGRWGDVKRVRKF  527 (571)
Q Consensus       487 A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~  527 (571)
                      |...+++++++.|.            +..+|..++.++...|+.+.|..+.++
T Consensus       300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            99999999998876            367899999999999999999888764

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.79  E-value=4.2e-16  Score=158.84  Aligned_cols=403  Identities=11%  Similarity=0.076  Sum_probs=255.8

Q ss_pred             ChhHHHHHHHHhhcCCChHHHHHHHcccCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 008276           63 NPSIGLKLMRTYGACGQMVDTRHVFDEITN--K-NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKA  139 (571)
Q Consensus        63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  139 (571)
                      +...|..++. +.+.|+++.|..+|+++..  | +...|...+..+.+.|++++|..+|++....  .|+...|...+..
T Consensus        12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~   88 (530)
T 2ooe_A           12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSY   88 (530)
T ss_dssp             CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHH
T ss_pred             CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHH
Confidence            5556666665 3556666666666666543  2 4445666666666666666777776666654  2455445444432


Q ss_pred             h-hcCCChHHHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHh---------CCCHHHHHHHHccCCC-CCc---hhH
Q 008276          140 C-SGSNSLLVGLQ----IHCSVVKV-GLDY-NLFNGNGLVAMYGK---------CGCLKEARRVLNDMPS-KDV---VTW  199 (571)
Q Consensus       140 ~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~-~~~---~~~  199 (571)
                      . ...|+.+.|.+    +|+..+.. |..| +...|...+....+         .|+++.|..+|++..+ |..   ..|
T Consensus        89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~  168 (530)
T 2ooe_A           89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW  168 (530)
T ss_dssp             HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred             HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence            2 23444444443    45544432 3332 34555555555443         5677777777776554 221   122


Q ss_pred             HHHHHHHH-------------hCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhC---CCCC
Q 008276          200 NSMVAGYA-------------QNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKL---DNKN  263 (571)
Q Consensus       200 ~~li~~~~-------------~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~---~~~~  263 (571)
                      ........             ..++++.|..++.++..                           ..+.++..   .+|+
T Consensus       169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~---------------------------~~~~l~~~~~~~~p~  221 (530)
T 2ooe_A          169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYET---------------------------VMKGLDRNAPSVPPQ  221 (530)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHH---------------------------HHHHCCSSSCCCCCC
T ss_pred             HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHH---------------------------HHHHhccccccCCCC
Confidence            22211100             12334444444443211                           00011110   0111


Q ss_pred             --------hhhHHHHHHHHHHc----CCc----hHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc-------CCchH----
Q 008276          264 --------LVSWNVMIAVYANN----SMP----AEAVDLYLQMEVHGIEPNAISVASVLPACGD-------LSALL----  316 (571)
Q Consensus       264 --------~~~~~~l~~~~~~~----g~~----~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~-------~~~~~----  316 (571)
                              ...|...+......    ++.    +++..+|++..... +-+...|......+..       .|+++    
T Consensus       222 ~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~  300 (530)
T 2ooe_A          222 NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL  300 (530)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence                    13344444332221    232    37778888887752 3456777777766654       68877    


Q ss_pred             ---HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-h-hHHHHHHHHHHhcCChHHHHHHHH
Q 008276          317 ---LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--QD-V-VSWTSMISAYGMSGQGYDAVALFS  389 (571)
Q Consensus       317 ---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~-~~~~~li~~~~~~~~~~~a~~~~~  389 (571)
                         +|..+++...+.-.+.+...+..++..+.+.|++++|..+|+.+.+  |+ . ..|..++..+.+.|++++|.++|+
T Consensus       301 ~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~  380 (530)
T 2ooe_A          301 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  380 (530)
T ss_dssp             HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence               8899999988632355678888999999999999999999998764  43 3 478889998999999999999999


Q ss_pred             HHHHCCCCC-CHHHHHHHHHH-hhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----C
Q 008276          390 KMLMSGLCP-DSIAFVSVLSA-CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM----P  463 (571)
Q Consensus       390 ~m~~~g~~p-~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~  463 (571)
                      +..+.  .| +...|...+.. +...|++++|..+|+...+..  +.+...|..++..+.+.|+.++|..+|++.    +
T Consensus       381 ~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~  456 (530)
T 2ooe_A          381 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  456 (530)
T ss_dssp             HHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred             HHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence            99985  33 33344333222 335899999999999998753  446788999999999999999999999987    2


Q ss_pred             CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 008276          464 MEPN--ERIWGSLVAACCLYSNMDIGILAADHIFHLAPN  500 (571)
Q Consensus       464 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  500 (571)
                      ..|+  ...|...+......|+.+.+..+++++.+..|.
T Consensus       457 ~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          457 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  495 (530)
T ss_dssp             SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence            2332  448888888888999999999999999998874

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.78  E-value=1.5e-17  Score=158.33  Aligned_cols=262  Identities=9%  Similarity=-0.058  Sum_probs=221.1

Q ss_pred             ChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 008276          263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD  342 (571)
Q Consensus       263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  342 (571)
                      +...+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+..
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   97 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV   97 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence            34567788899999999999999999998764 4467888888999999999999999999999875 556788888999


Q ss_pred             HHHhcCCHHHHHHHHhhCCC--C-ChhHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 008276          343 MYAKCGSLTEARTVFDQMRC--Q-DVVSWTSM--------------IS-AYGMSGQGYDAVALFSKMLMSGLCPDSIAFV  404 (571)
Q Consensus       343 ~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  404 (571)
                      .+...|++++|...++.+.+  | +...+..+              .. .+...|++++|...++++.+.. +.+...+.
T Consensus        98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  176 (327)
T 3cv0_A           98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA  176 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence            99999999999999988764  2 22223332              22 3777889999999999999852 33677899


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 008276          405 SVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYS  482 (571)
Q Consensus       405 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g  482 (571)
                      .+...+...|++++|...++++.+.  .+.+...+..+...+...|++++|.+.++++ ...| +..+|..+...+...|
T Consensus       177 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g  254 (327)
T 3cv0_A          177 SLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS  254 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999999874  3456788999999999999999999999987 3344 6788999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCC------------CchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          483 NMDIGILAADHIFHLAPN------------QSGYYVLLSNIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       483 ~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  529 (571)
                      ++++|...++++.+..|.            +..+|..++.++.+.|++++|..++++..
T Consensus       255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV  313 (327)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred             cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            999999999999999998            78899999999999999999999887543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.77  E-value=1.2e-16  Score=148.68  Aligned_cols=246  Identities=11%  Similarity=-0.028  Sum_probs=199.3

Q ss_pred             hHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCC-ChhHHHHHHHHH
Q 008276          266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQP-NLRLENALVDMY  344 (571)
Q Consensus       266 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~  344 (571)
                      ....+..+|...|+++.|+..++.    .-+|+..++..+...+...++.+.|.+.++.+...+..| +...+..+..++
T Consensus        36 ~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~  111 (291)
T 3mkr_A           36 RDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIY  111 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence            345567899999999999987754    235677888888889999999999999999998876434 556667777899


Q ss_pred             HhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHhhcCCCHHHHHH
Q 008276          345 AKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF---VSVLSACSHAGLLEEGRY  421 (571)
Q Consensus       345 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~---~~l~~~~~~~~~~~~a~~  421 (571)
                      ...|++++|.+.++.  ..+...+..++..+.+.|++++|.+.|+++.+.  .|+....   ...+..+...|++++|..
T Consensus       112 ~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~  187 (291)
T 3mkr_A          112 FYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYY  187 (291)
T ss_dssp             HHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred             HHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHH
Confidence            999999999999998  567788999999999999999999999999984  4664321   223344456689999999


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhhC
Q 008276          422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDI-GILAADHIFHLA  498 (571)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~  498 (571)
                      +|+++.+.  .+.+...++.+..++.+.|++++|.+.|+++ ...| +..++..++..+...|+.++ +..+++++.+.+
T Consensus       188 ~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~  265 (291)
T 3mkr_A          188 IFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH  265 (291)
T ss_dssp             HHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            99999885  4667889999999999999999999999997 4455 78889999999999999876 678999999999


Q ss_pred             CCCchhHHHHHHHHHhcCCHHHHHHHH
Q 008276          499 PNQSGYYVLLSNIYAKAGRWGDVKRVR  525 (571)
Q Consensus       499 p~~~~~~~~l~~~~~~~g~~~~A~~~~  525 (571)
                      |+++.+..    ...+.+.++++..-|
T Consensus       266 P~~~~~~d----~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          266 RSHPFIKE----YRAKENDFDRLVLQY  288 (291)
T ss_dssp             TTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred             CCChHHHH----HHHHHHHHHHHHHHc
Confidence            99886554    345666666665443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.77  E-value=1.8e-16  Score=159.25  Aligned_cols=230  Identities=12%  Similarity=-0.070  Sum_probs=124.7

Q ss_pred             CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 008276          278 SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVF  357 (571)
Q Consensus       278 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  357 (571)
                      +++++|.+++++..... +.+...+..+...+...|+++.|...++.+.+.. +.+..++..+..+|...+....+    
T Consensus       227 ~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~----  300 (472)
T 4g1t_A          227 EEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMN----  300 (472)
T ss_dssp             ---CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHH----
T ss_pred             hHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhh----
Confidence            34455555555554432 2334444555555555555555555555555443 22333343333333211100000    


Q ss_pred             hhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH
Q 008276          358 DQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI  436 (571)
Q Consensus       358 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  436 (571)
                       ...       ..........+.++.|...+++..+.  .| +...+..+...+...|++++|...|++..+. ...+..
T Consensus       301 -~~~-------~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~  369 (472)
T 4g1t_A          301 -LRE-------NGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVA  369 (472)
T ss_dssp             -C-------------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHH
T ss_pred             -HHH-------HHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChH
Confidence             000       00000011123467888888888774  34 3446778888999999999999999998864 222221


Q ss_pred             --HHHHHHHH-HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 008276          437 --EHFACLVD-LLGRAGKVEEAYDLIKQM-PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY  512 (571)
Q Consensus       437 --~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  512 (571)
                        ..+..+.. .+...|+.++|+..|++. .+.|+...+..         ....+..++++.++.+|+++.+|..++.+|
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~  440 (472)
T 4g1t_A          370 KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQ  440 (472)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence              12333333 234678999999999887 56665443322         234556778888999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhCCC
Q 008276          513 AKAGRWGDVKRVRKFMNSKGI  533 (571)
Q Consensus       513 ~~~g~~~~A~~~~~~m~~~~~  533 (571)
                      ...|++++|++.+++..+.+.
T Consensus       441 ~~~g~~~~A~~~y~kALe~~~  461 (472)
T 4g1t_A          441 ELNEKMQQADEDSERGLESGS  461 (472)
T ss_dssp             HHHHHCC--------------
T ss_pred             HHcCCHHHHHHHHHHHHhcCC
Confidence            999999999999999987663

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.77  E-value=1.2e-16  Score=151.49  Aligned_cols=280  Identities=11%  Similarity=0.095  Sum_probs=106.4

Q ss_pred             cCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHH
Q 008276           76 ACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCS  155 (571)
Q Consensus        76 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~  155 (571)
                      +.|++++|.+.++++..|  .+|..++.++.+.|++++|++.|.+.      +|..+|..++.++...|++++|..+++.
T Consensus        15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~   86 (449)
T 1b89_A           15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM   86 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            678899999999999665  48999999999999999999999653      5788999999999999999999998887


Q ss_pred             HHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 008276          156 VVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMA  235 (571)
Q Consensus       156 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~  235 (571)
                      .++.  .+++.+.+.++.+|.+.|+++++.++++   .|+..+|+.+...|...|++++|..+|..+         ..|.
T Consensus        87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~  152 (449)
T 1b89_A           87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG  152 (449)
T ss_dssp             ------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHH
T ss_pred             HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence            7764  4567888999999999999999998886   377789999999999999999999999977         2566


Q ss_pred             HHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCch
Q 008276          236 SLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL  315 (571)
Q Consensus       236 ~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~  315 (571)
                      .+..++.+.++  .+.|.+.+.+..  ++.+|..++.+|...|+++.|......+     ...+.-...++..|.+.|.+
T Consensus       153 ~LA~~L~~Lg~--yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~  223 (449)
T 1b89_A          153 RLASTLVHLGE--YQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYF  223 (449)
T ss_dssp             HHHHHHHTTTC--HHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhcc--HHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCH
Confidence            66667777766  666766666663  5667777777777777777774443321     22222233566667777777


Q ss_pred             HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc--CCHHHHHHHHhhCCC--------CChhHHHHHHHHHHhcCChHHHH
Q 008276          316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKC--GSLTEARTVFDQMRC--------QDVVSWTSMISAYGMSGQGYDAV  385 (571)
Q Consensus       316 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~  385 (571)
                      +++..+++...... +-....|+-|.-+|++-  +++.+..+.|..-..        .+...|..+...|.+.++++.|.
T Consensus       224 eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~  302 (449)
T 1b89_A          224 EELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  302 (449)
T ss_dssp             HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence            77777777666554 44455555555555442  334444444433221        23445666777777777777666


Q ss_pred             HH
Q 008276          386 AL  387 (571)
Q Consensus       386 ~~  387 (571)
                      ..
T Consensus       303 ~t  304 (449)
T 1b89_A          303 IT  304 (449)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.76  E-value=3.9e-17  Score=158.33  Aligned_cols=299  Identities=15%  Similarity=0.040  Sum_probs=198.9

Q ss_pred             HhhcCCChHHHHH-HHHHHHHhCC-CC--chhHHHHHHHHHHhCCCHHHHHHHHccCCC---CCchhHHHHHHHHHhCCC
Q 008276          139 ACSGSNSLLVGLQ-IHCSVVKVGL-DY--NLFNGNGLVAMYGKCGCLKEARRVLNDMPS---KDVVTWNSMVAGYAQNGR  211 (571)
Q Consensus       139 ~~~~~~~~~~a~~-~~~~~~~~g~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~  211 (571)
                      ++...|++++|.. .+++...... .|  +...+..+...+...|++++|...|+++.+   .+..+|..+..++...|+
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence            5566788999988 7776554321 11  345678899999999999999999998764   366789999999999999


Q ss_pred             chHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHH
Q 008276          212 FDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQME  291 (571)
Q Consensus       212 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  291 (571)
                      +++|+..|+++.+..  |+                                +..++..+...|...|++++|...++++.
T Consensus       114 ~~~A~~~~~~al~~~--~~--------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  159 (368)
T 1fch_A          114 ELLAISALRRCLELK--PD--------------------------------NQTALMALAVSFTNESLQRQACEILRDWL  159 (368)
T ss_dssp             HHHHHHHHHHHHHHC--TT--------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC--CC--------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999987642  32                                46789999999999999999999999999


Q ss_pred             HCCCCCCH-HHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C---Ch
Q 008276          292 VHGIEPNA-ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--Q---DV  365 (571)
Q Consensus       292 ~~g~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~---~~  365 (571)
                      ...  |+. ..+..+       +....           ...+. ..+..+.. +...|++++|...|+.+.+  |   +.
T Consensus       160 ~~~--~~~~~~~~~~-------~~~~~-----------~~~~~-~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~  217 (368)
T 1fch_A          160 RYT--PAYAHLVTPA-------EEGAG-----------GAGLG-PSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDP  217 (368)
T ss_dssp             HTS--TTTGGGCC----------------------------------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCH
T ss_pred             HhC--cCcHHHHHHH-------HHHhh-----------hhccc-HHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccH
Confidence            864  332 111111       00000           00000 01111222 2256677777777766653  3   35


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 008276          366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL  445 (571)
Q Consensus       366 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  445 (571)
                      .++..+...+...|++++|+..|+++.+. .+.+...+..+...+...|++++|...++++.+.  .+.+...+..+..+
T Consensus       218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~  294 (368)
T 1fch_A          218 DVQCGLGVLFNLSGEYDKAVDCFTAALSV-RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGIS  294 (368)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence            66777777777888888888888877773 1224567777777888888888888888887764  23456677778888


Q ss_pred             HHhcCCHHHHHHHHHhC-CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          446 LGRAGKVEEAYDLIKQM-PMEP------------NERIWGSLVAACCLYSNMDIGILAADHIFH  496 (571)
Q Consensus       446 ~~~~g~~~~A~~~~~~~-~~~p------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  496 (571)
                      |.+.|++++|...|+++ ...|            ...+|..+..++...|++++|..++++.++
T Consensus       295 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  358 (368)
T 1fch_A          295 CINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS  358 (368)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence            88888888888888776 1111            257788888888888888888887775543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.76  E-value=7.8e-17  Score=149.81  Aligned_cols=247  Identities=10%  Similarity=0.021  Sum_probs=202.9

Q ss_pred             HHHHHHcCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 008276          271 IAVYANNSMPAEAVDLYLQMEVHGIEPNA--ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG  348 (571)
Q Consensus       271 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  348 (571)
                      ++.....|++..|+..+++...  ..|+.  .....+.+++...|+++.|...++.    .-+|+..++..+...+...+
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~   79 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS   79 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred             HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence            4456778999999999887643  33443  3556678899999999999986654    23667788888999999999


Q ss_pred             CHHHHHHHHhhCC----CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHH
Q 008276          349 SLTEARTVFDQMR----CQ-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF  423 (571)
Q Consensus       349 ~~~~a~~~~~~~~----~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~  423 (571)
                      +.++|.+.++++.    .| +...+..+...+...|++++|++.+++      +.+...+..++..+.+.|++++|.+.+
T Consensus        80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l  153 (291)
T 3mkr_A           80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL  153 (291)
T ss_dssp             THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999864    24 556777888999999999999999987      457778999999999999999999999


Q ss_pred             HHHHHhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 008276          424 KIMTEQYKLVPRIEH---FACLVDLLGRAGKVEEAYDLIKQM--PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLA  498 (571)
Q Consensus       424 ~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  498 (571)
                      +++.+.   .|+...   ...++..+...|++++|..+|+++  ..+.+...|+.+..++.+.|++++|+..++++++.+
T Consensus       154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~  230 (291)
T 3mkr_A          154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD  230 (291)
T ss_dssp             HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            999876   354321   123445555669999999999998  334478899999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHhcCCHHH-HHHHHHHHHhCC
Q 008276          499 PNQSGYYVLLSNIYAKAGRWGD-VKRVRKFMNSKG  532 (571)
Q Consensus       499 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~  532 (571)
                      |+++.++..++.++...|+.++ +.++++++.+..
T Consensus       231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~  265 (291)
T 3mkr_A          231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH  265 (291)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999976 578999887654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.75  E-value=1.1e-16  Score=155.03  Aligned_cols=232  Identities=11%  Similarity=-0.004  Sum_probs=196.9

Q ss_pred             CHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHH
Q 008276          298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISA  374 (571)
Q Consensus       298 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~  374 (571)
                      +...+..+...+.+.|++++|...|+.+.+.. +.+..++..+..+|...|++++|...|+++.+   .+...|..+...
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS  142 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            34557788888999999999999999999876 56788899999999999999999999998864   457789999999


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 008276          375 YGMSGQGYDAVALFSKMLMSGLCPDSI-----------AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLV  443 (571)
Q Consensus       375 ~~~~~~~~~a~~~~~~m~~~g~~p~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  443 (571)
                      |...|++++|+..|+++.+  ..|+..           .+..+...+...|++++|..+++++.+.....++...+..+.
T Consensus       143 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            9999999999999999988  344322           233457788999999999999999998633333688999999


Q ss_pred             HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHH
Q 008276          444 DLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDV  521 (571)
Q Consensus       444 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  521 (571)
                      ..|...|++++|.+.++++ ...| +..+|..+..++...|++++|+..++++++..|++..++..++.+|.+.|++++|
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  300 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA  300 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999988 3344 6889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 008276          522 KRVRKFMNSKG  532 (571)
Q Consensus       522 ~~~~~~m~~~~  532 (571)
                      ...++++.+..
T Consensus       301 ~~~~~~al~~~  311 (365)
T 4eqf_A          301 VSNFLTALSLQ  311 (365)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            99999997643

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.72  E-value=3.4e-15  Score=149.96  Aligned_cols=384  Identities=9%  Similarity=-0.077  Sum_probs=202.1

Q ss_pred             CChhHHHHHHHHhhcCCChHHHHHHHcccC-----------CC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHhC----C
Q 008276           62 SNPSIGLKLMRTYGACGQMVDTRHVFDEIT-----------NK-NVVFFNVLIRSYVNNYLYYDALHVYKNMSVH----G  125 (571)
Q Consensus        62 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g  125 (571)
                      .....||.|...+...|++++|++.|++..           .+ ...+|+.+..+|...|++++|+..+++..+.    .
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            345567777777777777777777775432           11 3346677777777777777777777665431    0


Q ss_pred             --CCC-CcccHHHHHHHhh--cCCChHHHHHHHHHHHHhCCCCchhHHHHHHHH---HHhCCCHHHHHHHHccCCC---C
Q 008276          126 --FDP-DCYTYPCVLKACS--GSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAM---YGKCGCLKEARRVLNDMPS---K  194 (571)
Q Consensus       126 --~~p-~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~---~  194 (571)
                        ..+ ...++.....++.  ..+++++|...|++.++.. +.+...+..+..+   +...++.++|++.+++..+   .
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~  207 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD  207 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence              011 1122322222222  2345666666666665543 2233333333332   2233444445544443322   2


Q ss_pred             CchhHHHHHHHHHhC----CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHH
Q 008276          195 DVVTWNSMVAGYAQN----GRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVM  270 (571)
Q Consensus       195 ~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l  270 (571)
                      +..++..+...+...    |++++|.+.+++....                                  .+.+..++..+
T Consensus       208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~----------------------------------~~~~~~~~~~l  253 (472)
T 4g1t_A          208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK----------------------------------APGVTDVLRSA  253 (472)
T ss_dssp             CHHHHHHHHHHHHHCC------CHHHHHHHHHHHH----------------------------------CSSCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh----------------------------------CccHHHHHHHH
Confidence            333344443333332    3344555555444331                                  23367889999


Q ss_pred             HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 008276          271 IAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL  350 (571)
Q Consensus       271 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  350 (571)
                      ...|...|++++|+..+++..+.. +-+..++..+..++...+..         ..... .      ..........+..
T Consensus       254 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~---------~~~~~-~------~~~~~~~~~~~~~  316 (472)
T 4g1t_A          254 AKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQ---------VMNLR-E------NGMYGKRKLLELI  316 (472)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHH---------HHHC-------------CHHHHHHHH
T ss_pred             HHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHH---------hhhHH-H------HHHHHHHHHHhhH
Confidence            999999999999999999998753 33455665555544321110         00000 0      0001111112335


Q ss_pred             HHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HhhcCCCHHHHHHHHH
Q 008276          351 TEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSI--AFVSVLS-ACSHAGLLEEGRYYFK  424 (571)
Q Consensus       351 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~  424 (571)
                      +.|...++...+   .+...+..+...+...|++++|+..|++..+....|...  .+..+.. .....|++++|+..|+
T Consensus       317 ~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~  396 (472)
T 4g1t_A          317 GHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFI  396 (472)
T ss_dssp             HHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            667777766543   355678889999999999999999999999854333221  2223322 2346799999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 008276          425 IMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS  502 (571)
Q Consensus       425 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  502 (571)
                      +..+.   .|+.......         .+.+.+++++. ...| +..+|..+...+...|++++|++.|+++++.+|.+|
T Consensus       397 kal~i---~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p  464 (472)
T 4g1t_A          397 EGVKI---NQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP  464 (472)
T ss_dssp             HHHHS---CCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred             HHHhc---CcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence            98863   4554322222         22333444433 2234 677899999999999999999999999999998888


Q ss_pred             hhHHHHH
Q 008276          503 GYYVLLS  509 (571)
Q Consensus       503 ~~~~~l~  509 (571)
                      .++.-++
T Consensus       465 ~a~~~~G  471 (472)
T 4g1t_A          465 SASSWNG  471 (472)
T ss_dssp             -------
T ss_pred             cHhhcCC
Confidence            7766553

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.71  E-value=2.4e-16  Score=149.93  Aligned_cols=271  Identities=13%  Similarity=0.049  Sum_probs=136.5

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHccCCC---CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcC
Q 008276          167 NGNGLVAMYGKCGCLKEARRVLNDMPS---KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTN  243 (571)
Q Consensus       167 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~  243 (571)
                      .+..+...+...|++++|..+|+++.+   .+..++..+...+...|++++|...++++.+.  .|+             
T Consensus        23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~-------------   87 (327)
T 3cv0_A           23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPK-------------   87 (327)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-------------
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcC-------------
Confidence            344455555666666666666655542   24445555555666666666666666555442  111             


Q ss_pred             CCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHH
Q 008276          244 TSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHR  323 (571)
Q Consensus       244 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  323 (571)
                                         +...+..+...|...|++++|...++++.+.. +.+...+..+...+              
T Consensus        88 -------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~--------------  133 (327)
T 3cv0_A           88 -------------------DIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD--------------  133 (327)
T ss_dssp             -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC----------------------
T ss_pred             -------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH--------------
Confidence                               23445556666666666666666666655532 11111111110000              


Q ss_pred             HHHHcCCCCChhHHHHH-HH-HHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 008276          324 YVERKKLQPNLRLENAL-VD-MYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP  398 (571)
Q Consensus       324 ~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p  398 (571)
                              |+......+ .. .+...|++++|...++.+.+   .+...+..+...+...|++++|...++++.+.. +.
T Consensus       134 --------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~  204 (327)
T 3cv0_A          134 --------VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PD  204 (327)
T ss_dssp             --------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             --------HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CC
Confidence                    000000000 11 13444455555555554432   234455555556666666666666666655531 22


Q ss_pred             CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-----------
Q 008276          399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-----------  466 (571)
Q Consensus       399 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----------  466 (571)
                      +...+..+...+...|++++|...++++.+.  .+.+...+..+...+...|++++|.+.++++ ...|           
T Consensus       205 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  282 (327)
T 3cv0_A          205 DAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASR  282 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CC
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchh
Confidence            3445556666666666666666666666543  1234455566666666666666666666655 1122           


Q ss_pred             --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 008276          467 --NERIWGSLVAACCLYSNMDIGILAADHIFHL  497 (571)
Q Consensus       467 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  497 (571)
                        +...|..+..++...|++++|...++++++.
T Consensus       283 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  315 (327)
T 3cv0_A          283 EATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP  315 (327)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred             hcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence              2445666666666666666666666655443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.69  E-value=4.2e-15  Score=135.97  Aligned_cols=228  Identities=10%  Similarity=-0.022  Sum_probs=141.5

Q ss_pred             hhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCC--CChhHHHHHH
Q 008276          264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQ--PNLRLENALV  341 (571)
Q Consensus       264 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~  341 (571)
                      ...|..+...+...|++++|+.+|+++.+..  .+...+..+..++...|++++|...++.+.+....  ++..      
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------   76 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------   76 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH------
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH------
Confidence            3456666677777777777777777766654  55566666666666666666666666665543210  0100      


Q ss_pred             HHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHH
Q 008276          342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRY  421 (571)
Q Consensus       342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~  421 (571)
                                           .....|..+...+...|++++|...|+++.+  ..|+..       .+...|++++|..
T Consensus        77 ---------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~~~~a~~  126 (258)
T 3uq3_A           77 ---------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRNAEKELK  126 (258)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhHHHHHHH
Confidence                                 0024455566666666666666666666666  334432       2334456667777


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 008276          422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAP  499 (571)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  499 (571)
                      .++.+...  .+.+...+..+...+...|++++|...++++ ...| +..+|..+...+...|++++|+..++++++..|
T Consensus       127 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  204 (258)
T 3uq3_A          127 KAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP  204 (258)
T ss_dssp             HHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence            77666552  2233455666667777777777777777666 2233 566677777777777777777777777777777


Q ss_pred             CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276          500 NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       500 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                      +++.++..++.+|...|++++|...+++..+.
T Consensus       205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          205 NFVRAYIRKATAQIAVKEYASALETLDAARTK  236 (258)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            77777777777777777777777777766543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.68  E-value=2.1e-15  Score=133.91  Aligned_cols=195  Identities=15%  Similarity=0.052  Sum_probs=155.0

Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 008276          331 QPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSV  406 (571)
Q Consensus       331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l  406 (571)
                      +++...+..+...+...|++++|...|+...+   .+...+..+...+.+.|++++|+..|++..+  ..| +...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence            45667777888888899999999999988764   3567888889999999999999999999988  445 45578888


Q ss_pred             HHHhhcC-----------CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 008276          407 LSACSHA-----------GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIWGSL  474 (571)
Q Consensus       407 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l  474 (571)
                      ...+...           |++++|...+++..+.  .+.+...+..+..++...|++++|+..|+++ ....+...+..+
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l  157 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL  157 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence            8888888           9999999999999874  2445678889999999999999999999987 222788899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          475 VAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       475 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  529 (571)
                      ..++...|++++|+..|+++++.+|+++.++..++.++...|++++|...+++..
T Consensus       158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999998654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.67  E-value=3.2e-15  Score=136.77  Aligned_cols=234  Identities=10%  Similarity=-0.051  Sum_probs=169.7

Q ss_pred             HHHHHHHHHhcCCCCccHHHHHHHHhhCCC--CChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCC--CCC----HHHHH
Q 008276          232 DTMASLLPSVTNTSPENVLSVKEMFLKLDN--KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGI--EPN----AISVA  303 (571)
Q Consensus       232 ~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~  303 (571)
                      ..+..+-..+...++  .+.|...+++...  .+...+..+..+|...|++++|+..+++..+...  .++    ..++.
T Consensus         6 ~~~~~~g~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQ--FDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc--HHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            455566666777777  7788777765432  6788999999999999999999999999876421  112    46666


Q ss_pred             HHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHH
Q 008276          304 SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYD  383 (571)
Q Consensus       304 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  383 (571)
                      .+...+...|++++|...++.+.+..  |+.                                      ..+...|++++
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~--------------------------------------~~~~~~~~~~~  123 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA--------------------------------------DILTKLRNAEK  123 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH--------------------------------------HHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcC--chh--------------------------------------HHHHHHhHHHH
Confidence            77777777777777777777777653  221                                      23445566777


Q ss_pred             HHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276          384 AVALFSKMLMSGLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM  462 (571)
Q Consensus       384 a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  462 (571)
                      |...++++...  .|+ ...+..+...+...|++++|...++++.+.  .+.+...+..+..++...|++++|...++++
T Consensus       124 a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  199 (258)
T 3uq3_A          124 ELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKA  199 (258)
T ss_dssp             HHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            77777777763  343 346777777777888888888888887764  2345677778888888888888888888877


Q ss_pred             -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCchhHHHHHHH
Q 008276          463 -PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLA------PNQSGYYVLLSNI  511 (571)
Q Consensus       463 -~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~  511 (571)
                       ...| +...|..+...+...|++++|...++++.+..      |.+..++..+..+
T Consensus       200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence             3334 57778888888889999999999999998888      7777776666543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.65  E-value=6.2e-17  Score=165.67  Aligned_cols=148  Identities=14%  Similarity=0.137  Sum_probs=125.1

Q ss_pred             ChhHHHHHHHHhhcCCChHHHHHHHcccC-------CCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHH
Q 008276           63 NPSIGLKLMRTYGACGQMVDTRHVFDEIT-------NKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPC  135 (571)
Q Consensus        63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~  135 (571)
                      -..+||+||.+|++.|++++|.++|+.|.       .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            34589999999999999999999997753       58999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCC-----CCchhHHHHHHHHHhC
Q 008276          136 VLKACSGSNSL-LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS-----KDVVTWNSMVAGYAQN  209 (571)
Q Consensus       136 li~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~  209 (571)
                      +|.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++...+..     +.+.+...|...|.+.
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d  285 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD  285 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence            99999999985 78999999999999999999999999877776655555555444432     1234455566666665


Q ss_pred             C
Q 008276          210 G  210 (571)
Q Consensus       210 g  210 (571)
                      +
T Consensus       286 ~  286 (1134)
T 3spa_A          286 G  286 (1134)
T ss_dssp             S
T ss_pred             C
Confidence            5

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.64  E-value=9.2e-15  Score=135.17  Aligned_cols=241  Identities=10%  Similarity=-0.114  Sum_probs=192.8

Q ss_pred             HcCCchHHHHHHHHHHHCCCC---CCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 008276          276 NNSMPAEAVDLYLQMEVHGIE---PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE  352 (571)
Q Consensus       276 ~~g~~~~A~~~~~~m~~~g~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  352 (571)
                      ..|++++|+..|+++.+....   .+..++..+...+...|++++|...++.+.+.. +.+...+..+..+|...|++++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence            457899999999999876321   135677888888999999999999999999875 4567888899999999999999


Q ss_pred             HHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008276          353 ARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ  429 (571)
Q Consensus       353 a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  429 (571)
                      |...|+.+.+   .+...+..+...+...|++++|...|+++.+  ..|+.......+..+...|++++|...++.....
T Consensus        96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A           96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            9999998874   4677899999999999999999999999998  4566555555555667779999999999888774


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 008276          430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN-----ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG  503 (571)
Q Consensus       430 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  503 (571)
                        .+++...+ .++..+...++.++|.+.+++. ...|+     ...|..+...+...|++++|...++++++.+|++..
T Consensus       174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  250 (275)
T 1xnf_A          174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV  250 (275)
T ss_dssp             --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred             --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence              23444444 3677778888899999999887 33332     577888999999999999999999999999997755


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHH
Q 008276          504 YYVLLSNIYAKAGRWGDVKRVR  525 (571)
Q Consensus       504 ~~~~l~~~~~~~g~~~~A~~~~  525 (571)
                      .+   ..++...|++++|++.+
T Consensus       251 ~~---~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          251 EH---RYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HH---HHHHHHHHHHHHC----
T ss_pred             HH---HHHHHHHHHHHhhHHHH
Confidence            44   56788899999998876

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.64  E-value=1.8e-14  Score=133.08  Aligned_cols=248  Identities=11%  Similarity=-0.072  Sum_probs=190.8

Q ss_pred             hhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCC--hhHHHHHH
Q 008276          264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPN--LRLENALV  341 (571)
Q Consensus       264 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~  341 (571)
                      ...+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+....++  ...+..+.
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG   81 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence            3456677888999999999999999998864 33445777888899999999999999999988432222  23477888


Q ss_pred             HHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHH
Q 008276          342 DMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLE  417 (571)
Q Consensus       342 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~  417 (571)
                      ..+...|++++|...|+...+   .+...|..+...|...|++++|+..|++..+.  .| +...+..+...+...++++
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~  159 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYV  159 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998764   45678999999999999999999999998885  44 4556777763444556999


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHHHhcCCH
Q 008276          418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK---VEEAYDLIKQM----PMEPN------ERIWGSLVAACCLYSNM  484 (571)
Q Consensus       418 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~~~g~~  484 (571)
                      +|...|+++.+.  .+.+...+..+..++...|+   +++|...++++    ...|+      ..+|..+...|...|++
T Consensus       160 ~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  237 (272)
T 3u4t_A          160 KADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK  237 (272)
T ss_dssp             HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence            999999999875  23446777788888888887   77777777766    22243      25677788889999999


Q ss_pred             HHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 008276          485 DIGILAADHIFHLAPNQSGYYVLLSNIYAKAG  516 (571)
Q Consensus       485 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  516 (571)
                      ++|...++++++++|+++.++..+.......+
T Consensus       238 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  269 (272)
T 3u4t_A          238 VKADAAWKNILALDPTNKKAIDGLKMKLEHHH  269 (272)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred             HHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence            99999999999999999988888877665544

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.62  E-value=5.6e-16  Score=158.73  Aligned_cols=127  Identities=13%  Similarity=0.106  Sum_probs=106.6

Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 008276          331 QPNLRLENALVDMYAKCGSLTEARTVFDQMR-------CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAF  403 (571)
Q Consensus       331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~  403 (571)
                      ..-..+|++||++|++.|++++|.++|++|.       .||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus       124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY  203 (1134)
T 3spa_A          124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY  203 (1134)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence            3345688999999999999999999987653       489999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008276          404 VSVLSACSHAGL-LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDL  458 (571)
Q Consensus       404 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  458 (571)
                      +++|.++++.|+ .++|.++|++|.+. |+.||..+|++++....+.+-++...++
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv  258 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV  258 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence            999999999887 47889999999888 9999999999888776665444444333

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.61  E-value=1.4e-13  Score=136.57  Aligned_cols=378  Identities=8%  Similarity=-0.040  Sum_probs=219.4

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCCh---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 008276          101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSL---LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGK  177 (571)
Q Consensus       101 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~  177 (571)
                      +...+.+.|++++|+++|++..+.|   +...+..+...+...|+.   ++|..+++...+.    +...+..|..++..
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~   81 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA   81 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence            4556667777777777777776654   333333444444555555   6676666666543    44444555554444


Q ss_pred             CC-----CHHHHHHHHccCCCC-CchhHHHHHHHHHhCCCchHH---HHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCcc
Q 008276          178 CG-----CLKEARRVLNDMPSK-DVVTWNSMVAGYAQNGRFDEA---LDVCREMESLRIKPDADTMASLLPSVTNTSPEN  248 (571)
Q Consensus       178 ~g-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a---~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~  248 (571)
                      .|     ++++|...|++..++ +...+..|...|...+..+++   .+.+......                       
T Consensus        82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~-----------------------  138 (452)
T 3e4b_A           82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA-----------------------  138 (452)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH-----------------------
T ss_pred             CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC-----------------------
Confidence            43     556666666655432 334555555555554443332   2222222221                       


Q ss_pred             HHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC---chHHHHHHHHHH
Q 008276          249 VLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS---ALLLGRKIHRYV  325 (571)
Q Consensus       249 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~  325 (571)
                                   .+...+..|...|...+.++++.+....+.+.-...+...+..+...|...|   +.++|...|+..
T Consensus       139 -------------g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a  205 (452)
T 3e4b_A          139 -------------GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAG  205 (452)
T ss_dssp             -------------TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -------------CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence                         2345566666777777755555444333322111222226666666666677   778888888887


Q ss_pred             HHcCCCCChhHHHHHHHHHHhc----CCHHHHHHHHhhCCCCChhHHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCC
Q 008276          326 ERKKLQPNLRLENALVDMYAKC----GSLTEARTVFDQMRCQDVVSWTSMISA-Y--GMSGQGYDAVALFSKMLMSGLCP  398 (571)
Q Consensus       326 ~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~p  398 (571)
                      .+.| .++...+..+...|...    +++++|...|+.....+...+..|... +  ...+++++|+.+|++..+.|   
T Consensus       206 a~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---  281 (452)
T 3e4b_A          206 VSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---  281 (452)
T ss_dssp             HHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---
T ss_pred             HHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---
Confidence            7776 44555445566666544    688888888887773356667777766 4  46789999999999988876   


Q ss_pred             CHHHHHHHHHHhhcCC-----CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHH
Q 008276          399 DSIAFVSVLSACSHAG-----LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR----AGKVEEAYDLIKQMPMEPNER  469 (571)
Q Consensus       399 ~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~  469 (571)
                      +...+..+...|. .|     ++++|...|++..     +.++..+..|...|..    ..++++|...|++.-...+..
T Consensus       282 ~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~  355 (452)
T 3e4b_A          282 QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNS  355 (452)
T ss_dssp             CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTT
T ss_pred             CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHH
Confidence            5666666776665 44     8999999998875     3466777778877766    348999999998872233445


Q ss_pred             HHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276          470 IWGSLVAACCL----YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       470 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                      ....|...|..    ..|.++|...|+++.+.+++........+......++.++|..+.++....
T Consensus       356 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~  421 (452)
T 3e4b_A          356 ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAA  421 (452)
T ss_dssp             HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            55666666653    458999999999999887644333333333233445777788887776543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.61  E-value=2.1e-13  Score=135.32  Aligned_cols=343  Identities=13%  Similarity=0.028  Sum_probs=221.0

Q ss_pred             hHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCCh---HHHHHHHcccCCCChhhHHHHHHHHHHc
Q 008276           32 DACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQM---VDTRHVFDEITNKNVVFFNVLIRSYVNN  108 (571)
Q Consensus        32 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~  108 (571)
                      ..++..+.+.|++++|.++|.+.. +.|   ++..+..|...|...|+.   ++|.+.|+...+.++..+..+...+...
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa-~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~   82 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLA-ELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAK   82 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-HHT---CCTGGGTCC----------------------------CHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhC
Confidence            347888889999999999999998 776   345566777778888888   8999999988777778888888866666


Q ss_pred             C-----ChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChH---HHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC-
Q 008276          109 Y-----LYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLL---VGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCG-  179 (571)
Q Consensus       109 ~-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g-  179 (571)
                      +     ++++|+..|++..+.|   +...+..|...|...+..+   .+.+.+......|   +...+..|...|...+ 
T Consensus        83 ~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~  156 (452)
T 3e4b_A           83 PGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT  156 (452)
T ss_dssp             --CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred             CCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence            5     7889999999999876   3336666777766555433   3455555555554   4556677788888877 


Q ss_pred             ---CHHHHHHHHccCCCCCchhHHHHHHHHHhCC---CchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHH
Q 008276          180 ---CLKEARRVLNDMPSKDVVTWNSMVAGYAQNG---RFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVK  253 (571)
Q Consensus       180 ---~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~  253 (571)
                         ..+.+..+++.....+...+..+...|...|   +.++|++.|++..+.|... .                      
T Consensus       157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~-a----------------------  213 (452)
T 3e4b_A          157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT-A----------------------  213 (452)
T ss_dssp             GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC-H----------------------
T ss_pred             cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH-H----------------------
Confidence               4555666677766667779999999999999   8999999999988876322 1                      


Q ss_pred             HHHhhCCCCChhhHHHHHHHHHHc----CCchHHHHHHHHHHHCCCCCCHHHHHHHHHH-h--ccCCchHHHHHHHHHHH
Q 008276          254 EMFLKLDNKNLVSWNVMIAVYANN----SMPAEAVDLYLQMEVHGIEPNAISVASVLPA-C--GDLSALLLGRKIHRYVE  326 (571)
Q Consensus       254 ~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~  326 (571)
                                 ..+..|...|...    +++++|+.+|++.. .|   +...+..+... +  ...+++++|...|+...
T Consensus       214 -----------~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa  278 (452)
T 3e4b_A          214 -----------QRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGR  278 (452)
T ss_dssp             -----------HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence                       2223344444333    67888999888876 33   33444444444 2  45788899999988888


Q ss_pred             HcCCCCChhHHHHHHHHHHhcC-----CHHHHHHHHhhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCC
Q 008276          327 RKKLQPNLRLENALVDMYAKCG-----SLTEARTVFDQMRCQDVVSWTSMISAYGM----SGQGYDAVALFSKMLMSGLC  397 (571)
Q Consensus       327 ~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~  397 (571)
                      +.|   +...+..|...|. .|     ++++|...|+.....+...+..|...|..    ..++++|..+|++..+.|. 
T Consensus       279 ~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-  353 (452)
T 3e4b_A          279 AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-  353 (452)
T ss_dssp             HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-
T ss_pred             HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-
Confidence            776   4556666666666 44     88888888888774456667777776665    3488888888888877653 


Q ss_pred             CCHHHHHHHHHHhhc----CCCHHHHHHHHHHHHHh
Q 008276          398 PDSIAFVSVLSACSH----AGLLEEGRYYFKIMTEQ  429 (571)
Q Consensus       398 p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~  429 (571)
                        ......|...|..    ..+.++|..+|+...+.
T Consensus       354 --~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~  387 (452)
T 3e4b_A          354 --NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ  387 (452)
T ss_dssp             --TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred             --HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence              2233444444443    45778888888777654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.60  E-value=6.5e-14  Score=134.52  Aligned_cols=246  Identities=9%  Similarity=0.012  Sum_probs=202.8

Q ss_pred             hhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCc-hHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 008276          264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSA-LLLGRKIHRYVERKKLQPNLRLENALVD  342 (571)
Q Consensus       264 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~  342 (571)
                      ..+|..+...+.+.|++++|+..++++++.. +-+...|..+..++...|+ +++|...++.+++.+ +.+...|..+..
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~  174 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence            4578888899999999999999999998854 3456788888888999996 999999999999986 557788888999


Q ss_pred             HHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhc-CCCHH
Q 008276          343 MYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSH-AGLLE  417 (571)
Q Consensus       343 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~-~~~~~  417 (571)
                      ++...|++++|...|+++.+   .+...|..+..++...|++++|+..|+++++.  .| +...|+.+..++.. .|..+
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence            99999999999999998874   46778999999999999999999999999994  45 56688888888888 56657


Q ss_pred             HH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-------
Q 008276          418 EG-----RYYFKIMTEQYKLVPRIEHFACLVDLLGRAG--KVEEAYDLIKQMPMEP-NERIWGSLVAACCLYS-------  482 (571)
Q Consensus       418 ~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g-------  482 (571)
                      +|     +..+++..+.  .+.+...|..+..++...|  ++++|.+.+.++...| +...+..++..|.+.|       
T Consensus       253 eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~  330 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK  330 (382)
T ss_dssp             HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred             HHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence            77     4788888764  2445678888888888888  6889998888874455 5677888888888764       


Q ss_pred             -C-HHHHHHHHHHH-HhhCCCCchhHHHHHHHHHhc
Q 008276          483 -N-MDIGILAADHI-FHLAPNQSGYYVLLSNIYAKA  515 (571)
Q Consensus       483 -~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~  515 (571)
                       + .++|+.+++++ .+++|.....|..++..+...
T Consensus       331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence             2 58999999999 899999999999888776543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.59  E-value=4.4e-13  Score=122.06  Aligned_cols=138  Identities=12%  Similarity=0.004  Sum_probs=77.5

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008276          366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD  444 (571)
Q Consensus       366 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  444 (571)
                      ..+..+...+...|++++|.++++++.+.+..|+ ...+..+...+...|++++|...++++.+.  .+.+...+..++.
T Consensus       106 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~  183 (252)
T 2ho1_A          106 RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMAD  183 (252)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHH
Confidence            3444455555555566666666655555223332 335555555666666666666666666553  1233455556666


Q ss_pred             HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 008276          445 LLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY  505 (571)
Q Consensus       445 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  505 (571)
                      .+...|++++|...++++ ...| +...+..+...+...|++++|...++++.+..|+++...
T Consensus       184 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  246 (252)
T 2ho1_A          184 LLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ  246 (252)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence            666666666666666655 2233 445555555666666666666666666666666655443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.58  E-value=4.9e-14  Score=127.56  Aligned_cols=144  Identities=13%  Similarity=0.081  Sum_probs=84.4

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008276          365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD  444 (571)
Q Consensus       365 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  444 (571)
                      ...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.  .+.+...+..+..
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~  167 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGM  167 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHH
Confidence            3445555555556666666666666665531 224445555666666666666666666666553  2234455566666


Q ss_pred             HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 008276          445 LLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI  511 (571)
Q Consensus       445 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  511 (571)
                      .+...|++++|.+.++++ ...| +..++..+...+...|++++|...++++.+..|+++.++..+...
T Consensus       168 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l  236 (243)
T 2q7f_A          168 CLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL  236 (243)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence            666666666666666655 2222 455666666666666666666666666666666666666555443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.58  E-value=3.2e-13  Score=120.47  Aligned_cols=196  Identities=11%  Similarity=0.008  Sum_probs=133.0

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 008276          334 LRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC  410 (571)
Q Consensus       334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~  410 (571)
                      ...+..+...+...|++++|...|+.+.+   .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~   86 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL   86 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence            34455556666666666666666665542   345566667777777777777777777776631 22455666777777


Q ss_pred             hcC-CCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 008276          411 SHA-GLLEEGRYYFKIMTEQYKLVPR-IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDI  486 (571)
Q Consensus       411 ~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~  486 (571)
                      ... |++++|...++++.+. +..|+ ...+..+..++...|++++|.+.++++ ...| +...+..+...+...|++++
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  165 (225)
T 2vq2_A           87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD  165 (225)
T ss_dssp             HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence            777 7777777777777652 23333 456667777777777777777777766 3333 46677777777777788888


Q ss_pred             HHHHHHHHHhhCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276          487 GILAADHIFHLAP-NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       487 A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                      |...++++.+..| .+...+..++..+...|+.++|..+++.+.+.
T Consensus       166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  211 (225)
T 2vq2_A          166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN  211 (225)
T ss_dssp             HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            8888887777777 77777777777777778888777777777644

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.58  E-value=1.1e-12  Score=121.01  Aligned_cols=224  Identities=11%  Similarity=-0.072  Sum_probs=136.5

Q ss_pred             ChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc----CCchHHHHHHHHHHHHcCCCCChhHHH
Q 008276          263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD----LSALLLGRKIHRYVERKKLQPNLRLEN  338 (571)
Q Consensus       263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  338 (571)
                      +..++..+...|...|++++|+.+|++..+.   -+...+..+...+..    .+++++|...|+...+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            5667778888888888889998888888773   344566666666776    778888888888777664   455566


Q ss_pred             HHHHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008276          339 ALVDMYAK----CGSLTEARTVFDQMRC-QDVVSWTSMISAYGM----SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA  409 (571)
Q Consensus       339 ~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~  409 (571)
                      .+...|..    .+++++|...|+...+ .+...+..+...|..    .+++++|+..|++..+.+   +...+..+...
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~  155 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL  155 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence            66666666    6666666666665543 344555566666666    666666666666666543   34444455555


Q ss_pred             hhc----CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 008276          410 CSH----AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR----AGKVEEAYDLIKQM-PMEPNERIWGSLVAACCL  480 (571)
Q Consensus       410 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~  480 (571)
                      +..    .+++++|...|++..+.    .+...+..+...|..    .+++++|.+.+++. ... +...+..+...+..
T Consensus       156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~  230 (273)
T 1ouv_A          156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYN  230 (273)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHc
Confidence            554    56666666666665543    133445555555555    55555555555554 212 24444455555555


Q ss_pred             ----cCCHHHHHHHHHHHHhhCCC
Q 008276          481 ----YSNMDIGILAADHIFHLAPN  500 (571)
Q Consensus       481 ----~g~~~~A~~~~~~~~~~~p~  500 (571)
                          .+++++|+..++++.+.+|+
T Consensus       231 g~~~~~~~~~A~~~~~~a~~~~~~  254 (273)
T 1ouv_A          231 GEGVTRNEKQAIENFKKGCKLGAK  254 (273)
T ss_dssp             TSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             CCCcccCHHHHHHHHHHHHHcCCH
Confidence                55555555555555555553

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.58  E-value=1.9e-13  Score=117.79  Aligned_cols=165  Identities=13%  Similarity=0.081  Sum_probs=145.4

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 008276          364 DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACL  442 (571)
Q Consensus       364 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  442 (571)
                      +...|..+...|...|++++|++.|++.++  +.| +...+..+..++...|++++|...++.....  .+.+...+..+
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~   79 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL   79 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence            566788999999999999999999999998  455 5568888999999999999999999998874  34456777888


Q ss_pred             HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHH
Q 008276          443 VDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGD  520 (571)
Q Consensus       443 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  520 (571)
                      ...+...++++.|.+.+.+. ...| +...+..+...+...|++++|+..|+++++.+|.++.+|..++.+|.+.|++++
T Consensus        80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence            88999999999999999887 4444 678888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 008276          521 VKRVRKFMNSKG  532 (571)
Q Consensus       521 A~~~~~~m~~~~  532 (571)
                      |++.+++..+..
T Consensus       160 A~~~~~~al~~~  171 (184)
T 3vtx_A          160 AVKYFKKALEKE  171 (184)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCC
Confidence            999999987654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.58  E-value=1.2e-13  Score=122.56  Aligned_cols=206  Identities=12%  Similarity=-0.007  Sum_probs=116.7

Q ss_pred             CChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 008276          262 KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV  341 (571)
Q Consensus       262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  341 (571)
                      ++...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++...+.. +.+...+..+.
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg   80 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS   80 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            356677778888888888888888888887653 3456677777777777888888888887777765 34455566666


Q ss_pred             HHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHH
Q 008276          342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD-SIAFVSVLSACSHAGLLEEGR  420 (571)
Q Consensus       342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~  420 (571)
                      .++...+.         .  ...         .+...|++++|+..|++..+  ..|+ ...+..+...+...|++++|.
T Consensus        81 ~~~~~~~~---------~--~~~---------~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~  138 (217)
T 2pl2_A           81 EAYVALYR---------Q--AED---------RERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAE  138 (217)
T ss_dssp             HHHHHHHH---------T--CSS---------HHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHhhh---------h--hhh---------hcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHH
Confidence            66555400         0  000         01112566666666666655  3332 345555556666666666666


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276          421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHI  494 (571)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~  494 (571)
                      ..|+++.+. .  .+...+..+..+|...|++++|...|+++ ...| +...+..+...+...|++++|+..+++.
T Consensus       139 ~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          139 ASLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            666666554 2  45555566666666666666666666655 3333 4555556666666666666666666554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.57  E-value=2.3e-13  Score=123.96  Aligned_cols=197  Identities=10%  Similarity=-0.049  Sum_probs=166.9

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 008276          334 LRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC  410 (571)
Q Consensus       334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~  410 (571)
                      ...+..+...+...|++++|...|+.+.+   .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~  115 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence            34556666777777777777777776653   356678888889999999999999999998852 33667888899999


Q ss_pred             hcCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 008276          411 SHAGLLEEGRYYFKIMTEQYKLVP-RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIG  487 (571)
Q Consensus       411 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A  487 (571)
                      ...|++++|..+++++.+. +..| +...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|
T Consensus       116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999862 3445 4577888999999999999999999987 3344 678899999999999999999


Q ss_pred             HHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       488 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      ...++++.+..|++...+..++.++...|++++|.++++++.+..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY  239 (252)
T ss_dssp             HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            999999999999999999999999999999999999999998764

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.57  E-value=1.3e-12  Score=120.52  Aligned_cols=224  Identities=10%  Similarity=-0.051  Sum_probs=194.8

Q ss_pred             CHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHH
Q 008276          298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK----CGSLTEARTVFDQMRC-QDVVSWTSMI  372 (571)
Q Consensus       298 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li  372 (571)
                      +..++..+...+...|++++|...|+...+.   .+...+..+...|..    .+++++|...|++..+ .+...+..+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg   81 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG   81 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4567777888888999999999999999983   345677788889999    9999999999998765 4778899999


Q ss_pred             HHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008276          373 SAYGM----SGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH----AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD  444 (571)
Q Consensus       373 ~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  444 (571)
                      ..|..    .+++++|+..|++..+.+   +...+..+...+..    .+++++|...|++..+. +   +...+..+..
T Consensus        82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~  154 (273)
T 1ouv_A           82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS  154 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred             HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence            99999    999999999999999965   67788888888988    99999999999999875 3   5677788889


Q ss_pred             HHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh--
Q 008276          445 LLGR----AGKVEEAYDLIKQMPMEPNERIWGSLVAACCL----YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK--  514 (571)
Q Consensus       445 ~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--  514 (571)
                      .|..    .+++++|.+.|++.-...+...+..+...+..    .+++++|+..++++.+.+|  +..+..++.+|.+  
T Consensus       155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~  232 (273)
T 1ouv_A          155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE  232 (273)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence            9988    99999999999987212356788888999999    9999999999999999876  7789999999999  


Q ss_pred             --cCCHHHHHHHHHHHHhCCC
Q 008276          515 --AGRWGDVKRVRKFMNSKGI  533 (571)
Q Consensus       515 --~g~~~~A~~~~~~m~~~~~  533 (571)
                        .|++++|.+.+++..+.|.
T Consensus       233 ~~~~~~~~A~~~~~~a~~~~~  253 (273)
T 1ouv_A          233 GVTRNEKQAIENFKKGCKLGA  253 (273)
T ss_dssp             SSSCCSTTHHHHHHHHHHHTC
T ss_pred             CcccCHHHHHHHHHHHHHcCC
Confidence              9999999999999987763

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.57  E-value=9.1e-14  Score=125.79  Aligned_cols=197  Identities=10%  Similarity=0.059  Sum_probs=155.0

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008276          333 NLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA  409 (571)
Q Consensus       333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~  409 (571)
                      ....+..+...+...|++++|...|+++.+   .+...+..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~  100 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV  100 (243)
T ss_dssp             --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence            344556666777778888888888777653   356778888889999999999999999998852 3366788889999


Q ss_pred             hhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 008276          410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIG  487 (571)
Q Consensus       410 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A  487 (571)
                      +...|++++|...++++.+.  .+.+...+..+...+...|++++|...++++ ...| +...+..+...+...|++++|
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  178 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA  178 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999875  3456788889999999999999999999987 3334 678899999999999999999


Q ss_pred             HHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          488 ILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       488 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      +..++++.+..|.+..++..++.+|...|++++|...++++.+..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  223 (243)
T 2q7f_A          179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ  223 (243)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence            999999999999999999999999999999999999999998754

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.57  E-value=1.1e-13  Score=132.92  Aligned_cols=228  Identities=10%  Similarity=0.021  Sum_probs=195.1

Q ss_pred             HHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC-HHHHHHHHhhCCC---CChhHHHHHHHH
Q 008276          299 AISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS-LTEARTVFDQMRC---QDVVSWTSMISA  374 (571)
Q Consensus       299 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~---~~~~~~~~li~~  374 (571)
                      ...|..+...+...|++++|...++.+++.. +.+...|+.+..++...|+ +++|+..|+++.+   .+...|+.+..+
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~  175 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            3566777778888999999999999999986 5677888999999999997 9999999999874   467789999999


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCH
Q 008276          375 YGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR-AGKV  452 (571)
Q Consensus       375 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~  452 (571)
                      +...|++++|+..|+++++  +.| +...|..+..++...|++++|+..++++.+.  .+.+...|+.+..++.+ .|..
T Consensus       176 ~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~  251 (382)
T 2h6f_A          176 VEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN  251 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence            9999999999999999999  455 5668999999999999999999999999985  34567889999999999 6665


Q ss_pred             HHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC-------
Q 008276          453 EEA-----YDLIKQM-PMEP-NERIWGSLVAACCLYS--NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG-------  516 (571)
Q Consensus       453 ~~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------  516 (571)
                      ++|     ++.+++. .+.| +...|..+...+...|  ++++|+..++++ +.+|+++.++..++.+|.+.|       
T Consensus       252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~  330 (382)
T 2h6f_A          252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK  330 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred             hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence            777     4777766 5566 6788999999998888  699999999998 888999999999999999874       


Q ss_pred             --CHHHHHHHHHHH-HhCC
Q 008276          517 --RWGDVKRVRKFM-NSKG  532 (571)
Q Consensus       517 --~~~~A~~~~~~m-~~~~  532 (571)
                        .+++|+.+++++ .+.+
T Consensus       331 ~~~~~~A~~~~~~l~~~~D  349 (382)
T 2h6f_A          331 EDILNKALELCEILAKEKD  349 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHhC
Confidence              358999999998 5543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.56  E-value=2.1e-13  Score=133.82  Aligned_cols=267  Identities=13%  Similarity=0.022  Sum_probs=205.0

Q ss_pred             ChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHHhccCCchHHHHHHHHHHHHc----CCCC-C
Q 008276          263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN----AISVASVLPACGDLSALLLGRKIHRYVERK----KLQP-N  333 (571)
Q Consensus       263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~  333 (571)
                      ....+......+...|++++|...|+++.+.+ +.+    ...+..+...+...|+++.|...++.+.+.    +..| .
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            44566777888999999999999999988763 223    356777888889999999999999887643    2122 2


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCC--------------------hHHH
Q 008276          334 LRLENALVDMYAKCGSLTEARTVFDQMRC-----QD----VVSWTSMISAYGMSGQ--------------------GYDA  384 (571)
Q Consensus       334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~a  384 (571)
                      ..++..+...|...|++++|...+++..+     ++    ..++..+...|...|+                    +++|
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A  166 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA  166 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence            45677788889999999999999887763     22    3478888889999999                    9999


Q ss_pred             HHHHHHHHHC----CCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHH
Q 008276          385 VALFSKMLMS----GLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR----IEHFACLVDLLGRAGKVEEA  455 (571)
Q Consensus       385 ~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A  455 (571)
                      ...+++..+.    +..|. ..++..+...+...|++++|...+++..+...-.++    ...+..+...|...|++++|
T Consensus       167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  246 (406)
T 3sf4_A          167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA  246 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence            9998886542    11222 236778888899999999999999988754222233    24678889999999999999


Q ss_pred             HHHHHhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhHHHHHHHHHhcCCHHHH
Q 008276          456 YDLIKQM-P---MEPN----ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ------SGYYVLLSNIYAKAGRWGDV  521 (571)
Q Consensus       456 ~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A  521 (571)
                      ...+++. .   ..++    ..++..+...+...|++++|...++++.+..+..      ..++..++.+|...|++++|
T Consensus       247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  326 (406)
T 3sf4_A          247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA  326 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            9999876 1   1112    4577788888999999999999999998865332      55788999999999999999


Q ss_pred             HHHHHHHHh
Q 008276          522 KRVRKFMNS  530 (571)
Q Consensus       522 ~~~~~~m~~  530 (571)
                      .+++++..+
T Consensus       327 ~~~~~~al~  335 (406)
T 3sf4_A          327 MHFAEKHLE  335 (406)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999888653

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.56  E-value=9.4e-13  Score=117.41  Aligned_cols=208  Identities=13%  Similarity=-0.022  Sum_probs=144.0

Q ss_pred             ChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 008276          263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD  342 (571)
Q Consensus       263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  342 (571)
                      +...+..+...+...|++++|..+++++.+.. +.+...                                   +..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~-----------------------------------~~~l~~   50 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELA-----------------------------------WLVRAE   50 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH-----------------------------------HHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHH-----------------------------------HHHHHH
Confidence            34455555666666666666666666555432 223334                                   444444


Q ss_pred             HHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHH
Q 008276          343 MYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMS-GQGYDAVALFSKMLMSGLCPD-SIAFVSVLSACSHAGLLE  417 (571)
Q Consensus       343 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~  417 (571)
                      .|...|++++|...++.+.+   .+...+..+...+... |++++|...++++.+.+..|+ ...+..+...+...|+++
T Consensus        51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  130 (225)
T 2vq2_A           51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG  130 (225)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence            45555555555555544432   2445666777777888 888888888888877333444 457777888888889999


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276          418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PME--PNERIWGSLVAACCLYSNMDIGILAADHI  494 (571)
Q Consensus       418 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  494 (571)
                      +|...++++.+.  .+.+...+..++..+...|++++|.+.++++ ...  .+...+..+...+...|+.+.|...++.+
T Consensus       131 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  208 (225)
T 2vq2_A          131 LAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL  208 (225)
T ss_dssp             HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            999999888764  2345677888888999999999999998887 222  45667777777788899999999999999


Q ss_pred             HhhCCCCchhHHHH
Q 008276          495 FHLAPNQSGYYVLL  508 (571)
Q Consensus       495 ~~~~p~~~~~~~~l  508 (571)
                      .+..|+++.....+
T Consensus       209 ~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          209 QANFPYSEELQTVL  222 (225)
T ss_dssp             HHHCTTCHHHHHHH
T ss_pred             HHhCCCCHHHHHHh
Confidence            99999888776554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.56  E-value=2.2e-13  Score=125.60  Aligned_cols=228  Identities=8%  Similarity=-0.060  Sum_probs=187.4

Q ss_pred             HHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh----hHHHHHHHH
Q 008276          301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--QDV----VSWTSMISA  374 (571)
Q Consensus       301 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~li~~  374 (571)
                      .+......+...|++++|...++.+.+.. +.+...+..+..+|...|++++|...++...+  ++.    ..|..+...
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~   83 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI   83 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence            34456677889999999999999999875 44566788888999999999999999988764  222    348899999


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008276          375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE  454 (571)
Q Consensus       375 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  454 (571)
                      +...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+.  .+.+...+..+...+...+++++
T Consensus        84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~  160 (272)
T 3u4t_A           84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVK  160 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999842 235568999999999999999999999999863  34456777778734445569999


Q ss_pred             HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhC---CCC-----chhHHHHHHHHHhcCCHHHH
Q 008276          455 AYDLIKQM-PMEP-NERIWGSLVAACCLYSN---MDIGILAADHIFHLA---PNQ-----SGYYVLLSNIYAKAGRWGDV  521 (571)
Q Consensus       455 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A  521 (571)
                      |.+.|+++ ...| +...+..+...+...|+   +++|...++++.+..   |+.     ..+|..++.+|...|++++|
T Consensus       161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  240 (272)
T 3u4t_A          161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA  240 (272)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence            99999988 4455 47788888888888888   888999999999875   432     25888999999999999999


Q ss_pred             HHHHHHHHhCC
Q 008276          522 KRVRKFMNSKG  532 (571)
Q Consensus       522 ~~~~~~m~~~~  532 (571)
                      .+++++..+..
T Consensus       241 ~~~~~~al~~~  251 (272)
T 3u4t_A          241 DAAWKNILALD  251 (272)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhcC
Confidence            99999998765

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.56  E-value=5.5e-14  Score=138.31  Aligned_cols=266  Identities=12%  Similarity=-0.006  Sum_probs=208.5

Q ss_pred             hhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHhccCCchHHHHHHHHHHHHc----C-CCCChh
Q 008276          265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA----ISVASVLPACGDLSALLLGRKIHRYVERK----K-LQPNLR  335 (571)
Q Consensus       265 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~  335 (571)
                      ..+..+...+...|++++|+..|+++.+.+ +.+.    ..+..+...+...|++++|...++.+.+.    + .+....
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            345567788999999999999999998864 2232    46778888899999999999999988753    1 123346


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCCC-----C----ChhHHHHHHHHHHhcCC-----------------hHHHHHHHH
Q 008276          336 LENALVDMYAKCGSLTEARTVFDQMRC-----Q----DVVSWTSMISAYGMSGQ-----------------GYDAVALFS  389 (571)
Q Consensus       336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~~~-----------------~~~a~~~~~  389 (571)
                      .+..+...|...|++++|...+++..+     .    ...++..+...|...|+                 +++|++.++
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~  207 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ  207 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            677888999999999999999988753     1    23468888899999999                 999999998


Q ss_pred             HHHHC----CCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008276          390 KMLMS----GLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR----IEHFACLVDLLGRAGKVEEAYDLIK  460 (571)
Q Consensus       390 ~m~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~  460 (571)
                      +..+.    +..+. ..++..+...+...|++++|...+++..+...-.++    ...+..+...|...|++++|...++
T Consensus       208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  287 (411)
T 4a1s_A          208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK  287 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            87652    11122 237788888999999999999999988764221222    2377889999999999999999998


Q ss_pred             hC-CC---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhHHHHHHHHHhcCCHHHHHHHHH
Q 008276          461 QM-PM---EP----NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ------SGYYVLLSNIYAKAGRWGDVKRVRK  526 (571)
Q Consensus       461 ~~-~~---~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~  526 (571)
                      +. ..   ..    ...++..+...+...|++++|...++++++..+..      ..++..++.+|...|++++|..+++
T Consensus       288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  367 (411)
T 4a1s_A          288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE  367 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            76 11   11    24677888889999999999999999998865322      4488899999999999999999999


Q ss_pred             HHHhC
Q 008276          527 FMNSK  531 (571)
Q Consensus       527 ~m~~~  531 (571)
                      +..+.
T Consensus       368 ~al~~  372 (411)
T 4a1s_A          368 QHLQL  372 (411)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98744

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.54  E-value=3.1e-13  Score=128.72  Aligned_cols=265  Identities=14%  Similarity=0.021  Sum_probs=206.6

Q ss_pred             hHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHHhccCCchHHHHHHHHHHHHc----CCC-CChhH
Q 008276          266 SWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN----AISVASVLPACGDLSALLLGRKIHRYVERK----KLQ-PNLRL  336 (571)
Q Consensus       266 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~  336 (571)
                      .+......+...|++++|..+|+++.+.. +.+    ...+..+...+...|+++.|...++...+.    +.. ....+
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   85 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            45556778899999999999999998863 223    356778888899999999999999887643    212 22456


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCC--------------------hHHHHHH
Q 008276          337 ENALVDMYAKCGSLTEARTVFDQMRC-----QD----VVSWTSMISAYGMSGQ--------------------GYDAVAL  387 (571)
Q Consensus       337 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~a~~~  387 (571)
                      +..+...|...|++++|...+++..+     ++    ..++..+...+...|+                    +++|...
T Consensus        86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~  165 (338)
T 3ro2_A           86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL  165 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence            77888899999999999999988653     22    3378888899999999                    9999999


Q ss_pred             HHHHHHC----CCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 008276          388 FSKMLMS----GLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR----IEHFACLVDLLGRAGKVEEAYDL  458 (571)
Q Consensus       388 ~~~m~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~  458 (571)
                      +++....    +..|. ...+..+...+...|++++|...+++..+.....++    ...+..+...+...|++++|.+.
T Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  245 (338)
T 3ro2_A          166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY  245 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9887542    11222 236778888899999999999999988654221222    24778889999999999999999


Q ss_pred             HHhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhHHHHHHHHHhcCCHHHHHHH
Q 008276          459 IKQM-P---MEPN----ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ------SGYYVLLSNIYAKAGRWGDVKRV  524 (571)
Q Consensus       459 ~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~  524 (571)
                      +++. .   ..++    ..++..+...+...|++++|...++++++..+..      ..++..++.+|...|++++|..+
T Consensus       246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  325 (338)
T 3ro2_A          246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF  325 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            9876 1   1112    5577788889999999999999999998865322      44788999999999999999999


Q ss_pred             HHHHHhC
Q 008276          525 RKFMNSK  531 (571)
Q Consensus       525 ~~~m~~~  531 (571)
                      +++..+.
T Consensus       326 ~~~a~~~  332 (338)
T 3ro2_A          326 AEKHLEI  332 (338)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
Confidence            9998764

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.54  E-value=8.8e-14  Score=138.87  Aligned_cols=207  Identities=11%  Similarity=-0.001  Sum_probs=166.9

Q ss_pred             HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 008276          316 LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL-TEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKM  391 (571)
Q Consensus       316 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m  391 (571)
                      +.+...++...... +.+...+..+..+|...|++ ++|...|++..+   .+...|..+...|...|++++|+..|++.
T Consensus        85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  163 (474)
T 4abn_A           85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA  163 (474)
T ss_dssp             HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33444444433322 33555666666666667777 777777766543   34667888888899999999999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHhhcC---------CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--------CCHHH
Q 008276          392 LMSGLCPDSIAFVSVLSACSHA---------GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA--------GKVEE  454 (571)
Q Consensus       392 ~~~g~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~  454 (571)
                      .+  ..|+...+..+...+...         |++++|...++++.+.  .+.+...|..+..+|...        |++++
T Consensus       164 l~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~  239 (474)
T 4abn_A          164 LT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ  239 (474)
T ss_dssp             HT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             Hh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence            98  567778888899999998         9999999999999874  344578888999999988        99999


Q ss_pred             HHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 008276          455 AYDLIKQM-PMEP----NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKF  527 (571)
Q Consensus       455 A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  527 (571)
                      |++.|++. ...|    +...|..+..++...|++++|+..|+++++++|+++.++..++.++...|++++|.+.+.+
T Consensus       240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999988 4455    7889999999999999999999999999999999999999999999999999999975543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.53  E-value=3.6e-13  Score=124.40  Aligned_cols=245  Identities=8%  Similarity=-0.137  Sum_probs=188.8

Q ss_pred             hCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHH
Q 008276          208 QNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLY  287 (571)
Q Consensus       208 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  287 (571)
                      ..|++++|+..|+++.+.....+..                              +...+..+...+...|++++|...|
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~   66 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDE------------------------------RAQLLYERGVLYDSLGLRALARNDF   66 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHH------------------------------HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCch------------------------------hHHHHHHHHHHHHHcccHHHHHHHH
Confidence            4577888888888887653211111                              2466888899999999999999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh
Q 008276          288 LQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--QDV  365 (571)
Q Consensus       288 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~  365 (571)
                      +++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+..+|...|++++|...|+.+.+  |+.
T Consensus        67 ~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  144 (275)
T 1xnf_A           67 SQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND  144 (275)
T ss_dssp             HHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence            9998864 4467889999999999999999999999999875 45678888999999999999999999998874  555


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC-----HHHHH
Q 008276          366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR-----IEHFA  440 (571)
Q Consensus       366 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~  440 (571)
                      ......+..+...|++++|...+++.... .+++...+. ++..+...++.++|...++...+.   .|+     ...+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~  219 (275)
T 1xnf_A          145 PFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGWN-IVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNF  219 (275)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHH
Confidence            45555555667789999999999888775 334444444 667778888889999999887642   232     47788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008276          441 CLVDLLGRAGKVEEAYDLIKQM-PMEPNERIWGSLVAACCLYSNMDIGILAA  491 (571)
Q Consensus       441 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  491 (571)
                      .+...|.+.|++++|...|+++ ...|+.  +.....++...|++++|+..+
T Consensus       220 ~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          220 YLGKYYLSLGDLDSATALFKLAVANNVHN--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence            8999999999999999999988 556633  233355677888888888776

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.52  E-value=5.9e-11  Score=121.66  Aligned_cols=441  Identities=10%  Similarity=0.036  Sum_probs=284.3

Q ss_pred             ChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC--C-ChhhHHHHHHHHHHcCC---hhHHHH
Q 008276           43 DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN--K-NVVFFNVLIRSYVNNYL---YYDALH  116 (571)
Q Consensus        43 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~---~~~A~~  116 (571)
                      ...+....+++.+ ... +-|...|..++..+.+.+.++.+..+|+.+..  | ....|..-+..-.+.++   ++.+..
T Consensus        47 ~~~d~i~~lE~~l-~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~  124 (679)
T 4e6h_A           47 DESDVIGKLNDMI-EEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEP  124 (679)
T ss_dssp             CCSCHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred             CCHHHHHHHHHHH-HHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence            3445555666666 455 46999999999999999999999999998865  3 55678888888888888   999999


Q ss_pred             HHHHHHhCC-CCCCcccHHHHHHHhhcCCCh--------HHHHHHHHHHHH-hCC-CC-chhHHHHHHHHHHh-------
Q 008276          117 VYKNMSVHG-FDPDCYTYPCVLKACSGSNSL--------LVGLQIHCSVVK-VGL-DY-NLFNGNGLVAMYGK-------  177 (571)
Q Consensus       117 ~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~-~~~~~~~l~~~~~~-------  177 (571)
                      +|++..... ..|+...|..-+.-..+.++.        +...++|+..+. .|. .+ +...|...+.....       
T Consensus       125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~  204 (679)
T 4e6h_A          125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF  204 (679)
T ss_dssp             HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence            999998763 137777777766655444432        344577777665 365 44 35678887776543       


Q ss_pred             --CCCHHHHHHHHccCCC-CCc---hhHHHHHHHHHhCCC-------------chHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008276          178 --CGCLKEARRVLNDMPS-KDV---VTWNSMVAGYAQNGR-------------FDEALDVCREMESLRIKPDADTMASLL  238 (571)
Q Consensus       178 --~g~~~~A~~~~~~~~~-~~~---~~~~~li~~~~~~g~-------------~~~a~~~~~~m~~~g~~p~~~t~~~ll  238 (571)
                        .++++.+..+|+.... |..   .+|......-...+.             ++.|...+.++...            .
T Consensus       205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~------------~  272 (679)
T 4e6h_A          205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNI------------T  272 (679)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHH------------T
T ss_pred             HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHH------------H
Confidence              3457888899988775 321   233222111111111             11222222222110            0


Q ss_pred             HHhcCCCCccHHHHHHHHhhCCCCC------hhhHHHHHHHHHHcC-------CchHHHHHHHHHHHCCCCCCHHHHHHH
Q 008276          239 PSVTNTSPENVLSVKEMFLKLDNKN------LVSWNVMIAVYANNS-------MPAEAVDLYLQMEVHGIEPNAISVASV  305 (571)
Q Consensus       239 ~~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~g-------~~~~A~~~~~~m~~~g~~~~~~~~~~l  305 (571)
                      ..+.+.-......+  .....+.++      ...|...+..--..+       ..+++..+|++.+.. ++-....|...
T Consensus       273 ~~l~r~~p~~~~~~--~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~y  349 (679)
T 4e6h_A          273 KGLKRNLPITLNQA--TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNM  349 (679)
T ss_dssp             TTCCCCCCSSSTTC--CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHH
T ss_pred             HhHhhccccccccc--hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHH
Confidence            00000000000000  000000000      123444443322222       123456677777664 24466777777


Q ss_pred             HHHhccCCchHHHH-HHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------------CC-------
Q 008276          306 LPACGDLSALLLGR-KIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC-------------QD-------  364 (571)
Q Consensus       306 l~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------~~-------  364 (571)
                      +.-+...|+.+.|. .+|+...... +.+...+...+....+.|++++|.++|+.+..             |+       
T Consensus       350 a~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~  428 (679)
T 4e6h_A          350 ANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQ  428 (679)
T ss_dssp             HHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhh
Confidence            77777778888886 9999988753 55666777788888889999999999988763             31       


Q ss_pred             -----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhcCCCCCHHH
Q 008276          365 -----VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSH-AGLLEEGRYYFKIMTEQYKLVPRIEH  438 (571)
Q Consensus       365 -----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~  438 (571)
                           ...|...+....+.|+.+.|..+|.++++.-..+....|...+..-.+ .++.+.|..+|+...+.  ++.+...
T Consensus       429 ~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~  506 (679)
T 4e6h_A          429 LKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEY  506 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHH
T ss_pred             hccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHH
Confidence                 235788888888899999999999999885111223344333333233 35589999999999985  3456667


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 008276          439 FACLVDLLGRAGKVEEAYDLIKQM-PMEP----NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG  503 (571)
Q Consensus       439 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  503 (571)
                      +...++.....|+.+.|..+|++. ...|    ....|...+..-.+.|+.+.+..+.+++.+..|+++.
T Consensus       507 w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~  576 (679)
T 4e6h_A          507 INKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK  576 (679)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence            788888888999999999999987 3333    3457888888888999999999999999999998753

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.50  E-value=3.4e-13  Score=132.25  Aligned_cols=171  Identities=16%  Similarity=0.087  Sum_probs=122.6

Q ss_pred             HHHHHHHHhhCCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhcCCC
Q 008276          350 LTEARTVFDQMRC-----Q----DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL-CPD----SIAFVSVLSACSHAGL  415 (571)
Q Consensus       350 ~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~~~  415 (571)
                      +++|...++...+     +    ...++..+...+...|++++|...+++..+... .++    ..++..+...+...|+
T Consensus       163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  242 (406)
T 3sf4_A          163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE  242 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence            5666555554431     1    123577788888888999999988888765210 112    2367778888899999


Q ss_pred             HHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCC
Q 008276          416 LEEGRYYFKIMTEQYKLVPR----IEHFACLVDLLGRAGKVEEAYDLIKQM----PMEPN----ERIWGSLVAACCLYSN  483 (571)
Q Consensus       416 ~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~  483 (571)
                      +++|...+++..+...-.++    ..++..+...|...|++++|.+.+++.    ...++    ..++..+...+...|+
T Consensus       243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~  322 (406)
T 3sf4_A          243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN  322 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence            99999999887653221122    456788899999999999999998876    11122    5577888889999999


Q ss_pred             HHHHHHHHHHHHhhC------CCCchhHHHHHHHHHhcCCHHH
Q 008276          484 MDIGILAADHIFHLA------PNQSGYYVLLSNIYAKAGRWGD  520 (571)
Q Consensus       484 ~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~  520 (571)
                      +++|...++++.++.      +....++..++.++...|+...
T Consensus       323 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  365 (406)
T 3sf4_A          323 HDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS  365 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence            999999999998864      2335578888888888887643

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.46  E-value=1e-12  Score=129.24  Aligned_cols=271  Identities=11%  Similarity=-0.037  Sum_probs=185.7

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcC
Q 008276          199 WNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNS  278 (571)
Q Consensus       199 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g  278 (571)
                      +..+...+...|++++|+..|+++.+.+  |+....                            -...|..+...|...|
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~----------------------------~~~~~~~lg~~~~~~g  100 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRT----------------------------LSAIYSQLGNAYFYLG  100 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHH----------------------------HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhH----------------------------HHHHHHHHHHHHHHCC
Confidence            3445566677777777777777776532  221000                            0134566667777777


Q ss_pred             CchHHHHHHHHHHHC----CC-CCCHHHHHHHHHHhccCCchHHHHHHHHHHHHc----C-CCCChhHHHHHHHHHHhcC
Q 008276          279 MPAEAVDLYLQMEVH----GI-EPNAISVASVLPACGDLSALLLGRKIHRYVERK----K-LQPNLRLENALVDMYAKCG  348 (571)
Q Consensus       279 ~~~~A~~~~~~m~~~----g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~  348 (571)
                      ++++|...+++..+.    +. ......+..+...+...|++++|...++.+.+.    + .+....++..+...|...|
T Consensus       101 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g  180 (411)
T 4a1s_A          101 DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG  180 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC
Confidence            777777777766542    11 112355666666777777777777777766543    1 1122345666777778888


Q ss_pred             C-----------------HHHHHHHHhhCCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC--
Q 008276          349 S-----------------LTEARTVFDQMRC-----Q----DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC-PD--  399 (571)
Q Consensus       349 ~-----------------~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~--  399 (571)
                      +                 +++|...+++..+     .    ....+..+...+...|++++|+..+++..+.... ++  
T Consensus       181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  260 (411)
T 4a1s_A          181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA  260 (411)
T ss_dssp             HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence            8                 7888777766542     1    2246778888899999999999999988763110 12  


Q ss_pred             --HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC
Q 008276          400 --SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR----IEHFACLVDLLGRAGKVEEAYDLIKQM-------PMEP  466 (571)
Q Consensus       400 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p  466 (571)
                        ..++..+...+...|++++|...+++..+...-..+    ...+..+...+...|++++|.+.+++.       +..+
T Consensus       261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  340 (411)
T 4a1s_A          261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI  340 (411)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence              226788888999999999999999887664221112    467788899999999999999999877       1111


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 008276          467 -NERIWGSLVAACCLYSNMDIGILAADHIFHLAP  499 (571)
Q Consensus       467 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  499 (571)
                       ...++..+...+...|++++|...++++.++.+
T Consensus       341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  374 (411)
T 4a1s_A          341 GEARACWSLGNAHSAIGGHERALKYAEQHLQLAX  374 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence             244777888899999999999999999998775

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.44  E-value=2e-12  Score=134.25  Aligned_cols=162  Identities=18%  Similarity=0.196  Sum_probs=144.1

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 008276          365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLV  443 (571)
Q Consensus       365 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  443 (571)
                      ...|+.|...|.+.|++++|++.|++.++  +.|+ ...|..+..++.+.|++++|+..|++..+.  .+.+...|..+.
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg   84 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG   84 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence            45788899999999999999999999998  5665 558899999999999999999999999874  234568899999


Q ss_pred             HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHH
Q 008276          444 DLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDV  521 (571)
Q Consensus       444 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  521 (571)
                      .+|...|++++|++.|++. .+.| +...|..+..++...|++++|+..|+++++++|++..++..++.+|...|++++|
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence            9999999999999999987 5566 6789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 008276          522 KRVRKFMNS  530 (571)
Q Consensus       522 ~~~~~~m~~  530 (571)
                      .+.+++..+
T Consensus       165 ~~~~~kal~  173 (723)
T 4gyw_A          165 DERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998887763

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.44  E-value=3.4e-12  Score=109.94  Aligned_cols=167  Identities=12%  Similarity=0.050  Sum_probs=138.2

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008276          333 NLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA  409 (571)
Q Consensus       333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~  409 (571)
                      +..+|..+...|...|++++|.+.|++..+   .+...|..+...|.+.|++++|+..+.+..... +-+...+..+...
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~   82 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA   82 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence            556777788888888888888888887764   356778888889999999999999999988842 2345577777788


Q ss_pred             hhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 008276          410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIG  487 (571)
Q Consensus       410 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A  487 (571)
                      +...++++.+...+.+..+.  .+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+..++.+.|++++|
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence            88999999999999998874  3456678888999999999999999999987 4455 678899999999999999999


Q ss_pred             HHHHHHHHhhCCCCc
Q 008276          488 ILAADHIFHLAPNQS  502 (571)
Q Consensus       488 ~~~~~~~~~~~p~~~  502 (571)
                      +..|+++++++|+++
T Consensus       161 ~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          161 VKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHhCCccCH
Confidence            999999999998654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.43  E-value=3.8e-12  Score=123.77  Aligned_cols=235  Identities=9%  Similarity=-0.014  Sum_probs=120.9

Q ss_pred             HHHHHHHcCCchHHHHHHHHHHHCCC-CC----CHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 008276          270 MIAVYANNSMPAEAVDLYLQMEVHGI-EP----NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMY  344 (571)
Q Consensus       270 l~~~~~~~g~~~~A~~~~~~m~~~g~-~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  344 (571)
                      ....+...|++++|+..+++..+.-. .+    ...++..+...+...|+++.|...+....+.........        
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--------  180 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN--------  180 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH--------
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch--------
Confidence            44555666666666666666654210 11    123444455555555555555555555443210000000        


Q ss_pred             HhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhhcCCCHHHH
Q 008276          345 AKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS----GLCPD-SIAFVSVLSACSHAGLLEEG  419 (571)
Q Consensus       345 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a  419 (571)
                                       .....+++.+...|...|++++|+..+++..+.    +-.+. ..++..+...+...|++++|
T Consensus       181 -----------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  243 (383)
T 3ulq_A          181 -----------------IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA  243 (383)
T ss_dssp             -----------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             -----------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence                             001124455555566666666666666555431    10110 12455566666666666666


Q ss_pred             HHHHHHHHHhc---CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-----CC-CHHHHHHHHHHHHhcCC---HH
Q 008276          420 RYYFKIMTEQY---KL-VPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PM-----EP-NERIWGSLVAACCLYSN---MD  485 (571)
Q Consensus       420 ~~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-----~p-~~~~~~~l~~~~~~~g~---~~  485 (571)
                      ...+++..+..   +. +....++..+...+.+.|++++|.+.+++. ..     .| ....+..+...+...|+   ++
T Consensus       244 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  323 (383)
T 3ulq_A          244 IPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQ  323 (383)
T ss_dssp             HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHH
T ss_pred             HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHH
Confidence            66666654410   11 222345666666666666666666666654 10     11 12223445555666666   55


Q ss_pred             HHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          486 IGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       486 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      +|+..+++. ...|....++..++.+|...|++++|..++++..+
T Consensus       324 ~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          324 GFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            566655554 22233445666777777777777777777777653

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.42  E-value=5.9e-11  Score=111.43  Aligned_cols=219  Identities=11%  Similarity=0.050  Sum_probs=153.1

Q ss_pred             hHHHHHHHHHHHCCCCCCHHHHHHHHHHhc-------cCCch-------HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 008276          281 AEAVDLYLQMEVHGIEPNAISVASVLPACG-------DLSAL-------LLGRKIHRYVERKKLQPNLRLENALVDMYAK  346 (571)
Q Consensus       281 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  346 (571)
                      ++|..+|++..... +-+...|..+...+.       ..|++       ++|..+|+...+.-.+.+...|..++..+.+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            57777888877642 345556666655543       34665       7888888888873224455677778888888


Q ss_pred             cCCHHHHHHHHhhCCC--C-Chh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh-cCCCHHHHHH
Q 008276          347 CGSLTEARTVFDQMRC--Q-DVV-SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS-HAGLLEEGRY  421 (571)
Q Consensus       347 ~~~~~~a~~~~~~~~~--~-~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~~~~~~a~~  421 (571)
                      .|++++|..+|+++.+  | +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|..
T Consensus       112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~  190 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK  190 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence            8888888888887764  3 233 68888888888888888888888888742 233444443333322 3688888888


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          422 YFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-P---MEP--NERIWGSLVAACCLYSNMDIGILAADHIF  495 (571)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  495 (571)
                      +|++..+..  +.+...|..++..+.+.|++++|..+|++. .   ..|  ....|..++....+.|+.+.|..+++++.
T Consensus       191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~  268 (308)
T 2ond_A          191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            888887642  345677788888888888888888888877 2   244  35677777887788888888888888888


Q ss_pred             hhCCCCch
Q 008276          496 HLAPNQSG  503 (571)
Q Consensus       496 ~~~p~~~~  503 (571)
                      +..|++..
T Consensus       269 ~~~p~~~~  276 (308)
T 2ond_A          269 TAFREEYE  276 (308)
T ss_dssp             HHTTTTTS
T ss_pred             HHcccccc
Confidence            88876543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.42  E-value=4.2e-12  Score=120.73  Aligned_cols=235  Identities=15%  Similarity=0.055  Sum_probs=155.0

Q ss_pred             hHHHHHHHHHHcCCchHHHHHHHHHHHC----CCCC-CHHHHHHHHHHhccCCchHHHHHHHHHHHHcCC-CCC----hh
Q 008276          266 SWNVMIAVYANNSMPAEAVDLYLQMEVH----GIEP-NAISVASVLPACGDLSALLLGRKIHRYVERKKL-QPN----LR  335 (571)
Q Consensus       266 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~  335 (571)
                      .+..+...|...|++++|...+++....    +..| ....+..+...+...|++++|...++...+... .++    ..
T Consensus        45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  124 (338)
T 3ro2_A           45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR  124 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence            4555566666667777776666665432    1111 134455556666667777777776666554210 011    23


Q ss_pred             HHHHHHHHHHhcCC--------------------HHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHH
Q 008276          336 LENALVDMYAKCGS--------------------LTEARTVFDQMRC-----QD----VVSWTSMISAYGMSGQGYDAVA  386 (571)
Q Consensus       336 ~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~  386 (571)
                      ++..+...|...|+                    +++|...+++..+     ++    ...+..+...+...|++++|..
T Consensus       125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  204 (338)
T 3ro2_A          125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI  204 (338)
T ss_dssp             HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            55566667777777                    7777777665532     11    3357778888888999999999


Q ss_pred             HHHHHHHCCC-CCC----HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 008276          387 LFSKMLMSGL-CPD----SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR----IEHFACLVDLLGRAGKVEEAYD  457 (571)
Q Consensus       387 ~~~~m~~~g~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~  457 (571)
                      .+++..+... .++    ..++..+...+...|++++|...+++..+...-.++    ...+..+...+...|++++|..
T Consensus       205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  284 (338)
T 3ro2_A          205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID  284 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            9988765210 111    226777888888999999999999887653221222    4567788899999999999999


Q ss_pred             HHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 008276          458 LIKQM-------PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPN  500 (571)
Q Consensus       458 ~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  500 (571)
                      .++++       +..+ ...++..+...+...|++++|...++++.++.+.
T Consensus       285 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          285 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            98876       1111 2446778888999999999999999999887653

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.42  E-value=4.7e-10  Score=115.04  Aligned_cols=418  Identities=7%  Similarity=-0.022  Sum_probs=275.2

Q ss_pred             CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCC---hHHHHHHHHHHHHhC-CCCchhHH
Q 008276           93 KNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNS---LLVGLQIHCSVVKVG-LDYNLFNG  168 (571)
Q Consensus        93 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~g-~~~~~~~~  168 (571)
                      .|..+|..++..+.+.+.++.+..+|+.+... .+.....|..-+..-.+.++   ++.+..+|++.+... .+|++..|
T Consensus        64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW  142 (679)
T 4e6h_A           64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW  142 (679)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred             CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence            37889999999999999999999999999886 45566677777887778888   999999999998764 23788888


Q ss_pred             HHHHHHHHhCCCH--------HHHHHHHccCC------CC-CchhHHHHHHHHHh---------CCCchHHHHHHHHHHH
Q 008276          169 NGLVAMYGKCGCL--------KEARRVLNDMP------SK-DVVTWNSMVAGYAQ---------NGRFDEALDVCREMES  224 (571)
Q Consensus       169 ~~l~~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~  224 (571)
                      ...+....+.++.        +...++|+...      .+ +...|...+.....         .++++.+..+|++++.
T Consensus       143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~  222 (679)
T 4e6h_A          143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC  222 (679)
T ss_dssp             HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence            8888766665543        33446666532      22 34567777765432         3346778888888875


Q ss_pred             CCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHH--CCCC------
Q 008276          225 LRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEV--HGIE------  296 (571)
Q Consensus       225 ~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~--~g~~------  296 (571)
                      .....-..+|.....               +-...   +..+...++.-  ...+++.|...+.++..  .++.      
T Consensus       223 iP~~~~~~~w~~Y~~---------------fe~~~---~~~~a~~~~~e--~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~  282 (679)
T 4e6h_A          223 QPMDCLESMWQRYTQ---------------WEQDV---NQLTARRHIGE--LSAQYMNARSLYQDWLNITKGLKRNLPIT  282 (679)
T ss_dssp             SCCSSHHHHHHHHHH---------------HHHHH---CTTTHHHHHHH--HHHHHHHHHHHHHHHHHHTTTCCCCCCSS
T ss_pred             CccHHHHHHHHHHHH---------------HHHhc---CcchHHHHHHH--hhHHHHHHHHHHHHHHHHHHhHhhccccc
Confidence            211111222211110               00000   00011111111  11234444444444321  1110      


Q ss_pred             ---------C-----C---HHHHHHHHHHhccCC-------chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHH
Q 008276          297 ---------P-----N---AISVASVLPACGDLS-------ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTE  352 (571)
Q Consensus       297 ---------~-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  352 (571)
                               |     +   ...|...+.---..+       ..+.+..+|++.+... +....+|...+..+...|+.++
T Consensus       283 ~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~  361 (679)
T 4e6h_A          283 LNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDST  361 (679)
T ss_dssp             STTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTT
T ss_pred             cccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHH
Confidence                     1     0   122333332211111       1234566788887764 5577888888888888899888


Q ss_pred             HH-HHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCC---------CCCC------------HHHHHHHH
Q 008276          353 AR-TVFDQMRC--Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSG---------LCPD------------SIAFVSVL  407 (571)
Q Consensus       353 a~-~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---------~~p~------------~~~~~~l~  407 (571)
                      |. .+|+....  | +...|...+...-+.|++++|.++|+++++..         -.|+            ...|...+
T Consensus       362 a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~  441 (679)
T 4e6h_A          362 VITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM  441 (679)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence            96 99988764  4 55567788888899999999999999988731         0132            23677777


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH
Q 008276          408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG-KVEEAYDLIKQM--PMEPNERIWGSLVAACCLYSNM  484 (571)
Q Consensus       408 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~  484 (571)
                      ....+.|+.+.|..+|..+.+.. -......|...+..-.+.+ +.+.|.++|+..  ....+...|..++......|+.
T Consensus       442 ~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~  520 (679)
T 4e6h_A          442 NTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEE  520 (679)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCH
Confidence            87788899999999999998741 1223344444444444544 589999999987  3233667778888888889999


Q ss_pred             HHHHHHHHHHHhhCCC---CchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008276          485 DIGILAADHIFHLAPN---QSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI  533 (571)
Q Consensus       485 ~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  533 (571)
                      +.|..+|++++...|+   ....|..++..-.+.|+.+.+..+.+++.+.-.
T Consensus       521 ~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P  572 (679)
T 4e6h_A          521 SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP  572 (679)
T ss_dssp             HHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            9999999999998873   456788888888899999999999999987643

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.41  E-value=1.7e-11  Score=115.09  Aligned_cols=213  Identities=8%  Similarity=0.027  Sum_probs=173.3

Q ss_pred             HHHHHHHHHHHHcCCCCChhHHHHHHHHHH-------hcCCH-------HHHHHHHhhCCC---C-ChhHHHHHHHHHHh
Q 008276          316 LLGRKIHRYVERKKLQPNLRLENALVDMYA-------KCGSL-------TEARTVFDQMRC---Q-DVVSWTSMISAYGM  377 (571)
Q Consensus       316 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~---~-~~~~~~~li~~~~~  377 (571)
                      +.|..+|+.+.+.. +.+...|..++..+.       ..|++       ++|..+|++..+   | +...|..++..+.+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            67788888888764 567778887777765       35775       899999998754   3 45689999999999


Q ss_pred             cCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCCHHH
Q 008276          378 SGQGYDAVALFSKMLMSGLCPD-SI-AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG-RAGKVEE  454 (571)
Q Consensus       378 ~~~~~~a~~~~~~m~~~g~~p~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~  454 (571)
                      .|++++|..+|+++.+  +.|+ .. .|..++..+.+.|++++|..+|+++.+.  .+++...|...+.... ..|+.++
T Consensus       112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~  187 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV  187 (308)
T ss_dssp             TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred             cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999998  5664 33 7888999999999999999999999864  2344555654444432 3699999


Q ss_pred             HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CC-CCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276          455 AYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHL---AP-NQSGYYVLLSNIYAKAGRWGDVKRVRKFM  528 (571)
Q Consensus       455 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  528 (571)
                      |.++|++. ...| +...|..++..+.+.|++++|..+|+++++.   .| .....|..++..+.+.|+.++|..+++++
T Consensus       188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999987 3334 6788999999999999999999999999996   44 36778999999999999999999999999


Q ss_pred             HhCCC
Q 008276          529 NSKGI  533 (571)
Q Consensus       529 ~~~~~  533 (571)
                      .+...
T Consensus       268 ~~~~p  272 (308)
T 2ond_A          268 FTAFR  272 (308)
T ss_dssp             HHHTT
T ss_pred             HHHcc
Confidence            87653

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.41  E-value=1.7e-11  Score=105.31  Aligned_cols=163  Identities=15%  Similarity=0.052  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008276          367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL  446 (571)
Q Consensus       367 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  446 (571)
                      .|..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++.+.  .+.+...+..+...+
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~   86 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence            3455556666666777777766666553 1224556666666777777777777777776653  234556667777777


Q ss_pred             HhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 008276          447 GRAGKVEEAYDLIKQM-PM-EPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRV  524 (571)
Q Consensus       447 ~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  524 (571)
                      ...|++++|.+.++++ .. +.+...+..+...+...|++++|...++++.+..|.++.++..++.++...|++++|..+
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  166 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH  166 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence            7777777777777766 22 235667777788888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHhCC
Q 008276          525 RKFMNSKG  532 (571)
Q Consensus       525 ~~~m~~~~  532 (571)
                      +++..+..
T Consensus       167 ~~~~~~~~  174 (186)
T 3as5_A          167 FKKANELD  174 (186)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHcC
Confidence            88876543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.40  E-value=6.1e-13  Score=125.24  Aligned_cols=237  Identities=15%  Similarity=0.081  Sum_probs=127.1

Q ss_pred             ChhhHHHHHHHHHHcCCchHHHHHHHHHHHC-------CCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHc------C
Q 008276          263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVH-------GIEPNAISVASVLPACGDLSALLLGRKIHRYVERK------K  329 (571)
Q Consensus       263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~  329 (571)
                      +..++..+...+...|++++|..+++++.+.       ........+..+...+...|++++|...++.+.+.      +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            3456778888888899999999888888752       11223455666666677777777777777666543      1


Q ss_pred             C-CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHH
Q 008276          330 L-QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS------GLCP-DSI  401 (571)
Q Consensus       330 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~  401 (571)
                      . +....+                               +..+...|...|++++|...++++.+.      +..| ...
T Consensus       106 ~~~~~~~~-------------------------------~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  154 (311)
T 3nf1_A          106 DHPAVAAT-------------------------------LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK  154 (311)
T ss_dssp             TCHHHHHH-------------------------------HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CChHHHHH-------------------------------HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence            1 112233                               344444444455555555555444432      1112 122


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhc-----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-C---------CC
Q 008276          402 AFVSVLSACSHAGLLEEGRYYFKIMTEQY-----K-LVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-P---------ME  465 (571)
Q Consensus       402 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~  465 (571)
                      .+..+...+...|++++|..+++++.+..     + .+.....+..+...|...|++++|.+.++++ .         ..
T Consensus       155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  234 (311)
T 3nf1_A          155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD  234 (311)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            45555555666666666666666554420     0 1112234555666666666666666666554 1         11


Q ss_pred             CCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          466 PNE-------RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       466 p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      +..       ..+..+...+...+.+.++...++++....|....++..++.+|.+.|++++|.+++++..+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            111       11122222333455666667777777777777788888888888888888888888887754

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.38  E-value=3.5e-10  Score=109.42  Aligned_cols=264  Identities=13%  Similarity=0.020  Sum_probs=189.5

Q ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHH----HHHHHHHHhccCCchHHHHHHHHHHHHcCC-CCC----hhHH
Q 008276          267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI----SVASVLPACGDLSALLLGRKIHRYVERKKL-QPN----LRLE  337 (571)
Q Consensus       267 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~  337 (571)
                      .......+...|++++|...+++........+..    .+..+...+...|+++.|...++...+... ..+    ..++
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   96 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   96 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            3445566778999999999999987754222222    455566677888999999999988775321 111    2235


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhCCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C--CHHH
Q 008276          338 NALVDMYAKCGSLTEARTVFDQMRC-------Q----DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC--P--DSIA  402 (571)
Q Consensus       338 ~~l~~~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~~  402 (571)
                      ..+...+...|++++|...+++..+       +    ....+..+...+...|++++|...+++..+....  +  ...+
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence            5677788999999999998887652       1    1235667888899999999999999998763221  1  2346


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHH
Q 008276          403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFA-----CLVDLLGRAGKVEEAYDLIKQM-PMEPN-----ERIW  471 (571)
Q Consensus       403 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~  471 (571)
                      +..+...+...|++++|...+++.............+.     ..+..+...|++++|...+++. ...|.     ...+
T Consensus       177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  256 (373)
T 1hz4_A          177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  256 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence            77788888999999999999998875422211111121     2345577899999999999988 22221     2356


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhCCC-----C-chhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          472 GSLVAACCLYSNMDIGILAADHIFHLAPN-----Q-SGYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       472 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      ..+...+...|++++|...++++....+.     + ..++..++.++...|++++|...+++..+
T Consensus       257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            67778888999999999999998875422     1 23677888999999999999999888764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.37  E-value=1.5e-11  Score=119.58  Aligned_cols=189  Identities=8%  Similarity=-0.060  Sum_probs=139.4

Q ss_pred             HHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC--C---CC-CHHHHH
Q 008276          340 LVDMYAKCGSLTEARTVFDQMRC-----QD----VVSWTSMISAYGMSGQGYDAVALFSKMLMSG--L---CP-DSIAFV  404 (571)
Q Consensus       340 l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~---~p-~~~~~~  404 (571)
                      ....+...|++++|...|+...+     ++    ..++..+...|...|++++|+..+++..+.-  .   .+ ...++.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            33445566666666666665532     22    2457777888888888888888888876521  1   11 134788


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhC-C-----CC-C-CHHHHH
Q 008276          405 SVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI----EHFACLVDLLGRAGKVEEAYDLIKQM-P-----ME-P-NERIWG  472 (571)
Q Consensus       405 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~-p-~~~~~~  472 (571)
                      .+...|...|++++|...+++..+...-.++.    .++..+..+|...|++++|.+.+++. .     .. | ...++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            88999999999999999999887542222222    47888999999999999999999877 1     22 4 456788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhC-----CCCchhHHHHHHHHHhcCC---HHHHHHHHHHH
Q 008276          473 SLVAACCLYSNMDIGILAADHIFHLA-----PNQSGYYVLLSNIYAKAGR---WGDVKRVRKFM  528 (571)
Q Consensus       473 ~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m  528 (571)
                      .+...+...|++++|...++++++..     |.....+..++.+|...|+   +++|+.++++.
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~  332 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK  332 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            89999999999999999999998864     3334446778899999999   78888877765

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.35  E-value=1.7e-12  Score=122.12  Aligned_cols=238  Identities=10%  Similarity=0.024  Sum_probs=145.1

Q ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHHhhCCC-----------CChhhHHHHHHHHHHcCCchHHHHHHHHHHHC------
Q 008276          231 ADTMASLLPSVTNTSPENVLSVKEMFLKLDN-----------KNLVSWNVMIAVYANNSMPAEAVDLYLQMEVH------  293 (571)
Q Consensus       231 ~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------  293 (571)
                      ..++..+...+...++  .+.|...+++...           .....+..+...|...|++++|..++++....      
T Consensus        27 ~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  104 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGR--YEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG  104 (311)
T ss_dssp             HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence            4556666777777777  7777777766543           23456888999999999999999999998764      


Q ss_pred             CCCC-CHHHHHHHHHHhccCCchHHHHHHHHHHHHc------CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh
Q 008276          294 GIEP-NAISVASVLPACGDLSALLLGRKIHRYVERK------KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVV  366 (571)
Q Consensus       294 g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  366 (571)
                      +-.| ....+..+...+...|++++|...++.+.+.      +..|.                              ...
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~------------------------------~~~  154 (311)
T 3nf1_A          105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD------------------------------VAK  154 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH------------------------------HHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH------------------------------HHH
Confidence            2222 3467778888899999999999999887753      11111                              122


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc------CCC
Q 008276          367 SWTSMISAYGMSGQGYDAVALFSKMLMS------GLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQY------KLV  433 (571)
Q Consensus       367 ~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~  433 (571)
                      .+..+...+...|++++|+++++++.+.      +..|+ ..++..+...+...|++++|...++++.+..      ...
T Consensus       155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  234 (311)
T 3nf1_A          155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD  234 (311)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            3444455555555566666555555442      11222 2356666666777777777777776665420      011


Q ss_pred             CC-------HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 008276          434 PR-------IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPN  500 (571)
Q Consensus       434 ~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  500 (571)
                      +.       ...+..+...+...+.+.+|...+++. ...| ...++..+...|...|++++|...+++++++.|.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            11       111222333344445555566666665 2334 4567888999999999999999999999987764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.35  E-value=2.9e-11  Score=108.07  Aligned_cols=188  Identities=11%  Similarity=-0.073  Sum_probs=96.6

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 008276          334 LRLENALVDMYAKCGSLTEARTVFDQMRC----QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD-SIAFVSVLS  408 (571)
Q Consensus       334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~  408 (571)
                      +..+......+...|++++|...|+...+    ++...+..+..++...|++++|+..|++..+  ..|+ ...+..+..
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~   84 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSA   84 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence            34455555555555666666655555432    3444444455555555666666666665555  3333 234555555


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 008276          409 ACSHAGLLEEGRYYFKIMTEQYKLVPRI-------EHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN---ERIWGSLVAA  477 (571)
Q Consensus       409 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~  477 (571)
                      .+...|++++|...+++..+..  +.+.       ..|..+...+...|++++|++.|+++ ...|+   ...|..+...
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  162 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL  162 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence            5555566666666665555431  1222       33444555555555555555555554 33443   2334444444


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       478 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      +..     .+...++++..+.+.+...|...  .....|.+++|+.++++..+..
T Consensus       163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~  210 (228)
T 4i17_A          163 FYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS  210 (228)
T ss_dssp             HHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence            432     22333444444444443333322  2233445599999999988654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.34  E-value=8.6e-11  Score=104.98  Aligned_cols=204  Identities=11%  Similarity=0.079  Sum_probs=161.2

Q ss_pred             CCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHH
Q 008276          297 PNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--Q-DVVSWTSMIS  373 (571)
Q Consensus       297 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~  373 (571)
                      .|...+......+...|++++|...|+...+...+++...+..+..++...|++++|...|+...+  | +...|..+..
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   84 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA   84 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            456788888889999999999999999999987547777777799999999999999999998864  3 4567899999


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHH
Q 008276          374 AYGMSGQGYDAVALFSKMLMSGLCPD-S-------IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR---IEHFACL  442 (571)
Q Consensus       374 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l  442 (571)
                      .|...|++++|+..+++..+.  .|+ .       ..|..+...+...|++++|...|+++.+.   .|+   ...+..+
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l  159 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSL  159 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHH
Confidence            999999999999999999984  454 4       45777888889999999999999999853   454   5678888


Q ss_pred             HHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 008276          443 VDLLGRAGKVEEAYDLIKQM-PM-EPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY  512 (571)
Q Consensus       443 ~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  512 (571)
                      ..+|...|+.     +++++ .+ ..+...|....  ....+.+++|+..++++.+++|+++.+...+..+.
T Consensus       160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~  224 (228)
T 4i17_A          160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK  224 (228)
T ss_dssp             HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence            8888766543     23332 11 22344444333  33467799999999999999999998888776653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.33  E-value=2.9e-11  Score=120.67  Aligned_cols=209  Identities=11%  Similarity=-0.015  Sum_probs=165.5

Q ss_pred             chHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCch-HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 008276          280 PAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSAL-LLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD  358 (571)
Q Consensus       280 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  358 (571)
                      +++++..+++..... +.+...+..+...+...|++ ++|...|+.+.+.. +.+...+..+..+|...|++++|...|+
T Consensus        84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            566667777655432 34677788888888888888 88988888888875 4557788888888889999999999888


Q ss_pred             hCCC--CChhHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcC--------CCHHH
Q 008276          359 QMRC--QDVVSWTSMISAYGMS---------GQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHA--------GLLEE  418 (571)
Q Consensus       359 ~~~~--~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~--------~~~~~  418 (571)
                      ...+  |+...+..+...+...         |++++|+..|++..+.  .| +...|..+..++...        |++++
T Consensus       162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~  239 (474)
T 4abn_A          162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ  239 (474)
T ss_dssp             HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence            8764  6767788888888888         9999999999998884  44 466888888888887        88999


Q ss_pred             HHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008276          419 GRYYFKIMTEQYKLV---PRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADH  493 (571)
Q Consensus       419 a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~  493 (571)
                      |...|+++.+.  .+   .+...|..+..+|...|++++|.+.|+++ ...| +...+..+...+...|++++|+..+.+
T Consensus       240 A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          240 ALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999998874  12   36788888999999999999999999887 4455 566788888888888888888876544


Q ss_pred             H
Q 008276          494 I  494 (571)
Q Consensus       494 ~  494 (571)
                      +
T Consensus       318 ~  318 (474)
T 4abn_A          318 T  318 (474)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.32  E-value=1.1e-10  Score=113.15  Aligned_cols=161  Identities=13%  Similarity=0.011  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhccCCchHHHHHHHHHHHHcCCC-C-----Chh
Q 008276          267 WNVMIAVYANNSMPAEAVDLYLQMEVHGI-EPN----AISVASVLPACGDLSALLLGRKIHRYVERKKLQ-P-----NLR  335 (571)
Q Consensus       267 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~  335 (571)
                      +......+...|++++|+..|++..+... .++    ..++..+...+...|+++.|...++...+.... +     ...
T Consensus       104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  183 (378)
T 3q15_A          104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ  183 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence            33455677889999999999999875421 122    345666667777778888777777776642100 1     123


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHH
Q 008276          336 LENALVDMYAKCGSLTEARTVFDQMRC-----QD----VVSWTSMISAYGMSGQGYDAVALFSKMLM-----SGLCPDSI  401 (571)
Q Consensus       336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~  401 (571)
                      +++.+..+|...|++++|.+.|++..+     ++    ..++..+...|...|++++|+..+++..+     .. +....
T Consensus       184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~  262 (378)
T 3q15_A          184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPK  262 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHH
Confidence            344455555555555555555544331     11    12344444444444555555544444443     11 11123


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276          402 AFVSVLSACSHAGLLEEGRYYFKIMTE  428 (571)
Q Consensus       402 ~~~~l~~~~~~~~~~~~a~~~~~~~~~  428 (571)
                      ++..+...+.+.|++++|...+++..+
T Consensus       263 ~~~~la~~~~~~g~~~~A~~~~~~al~  289 (378)
T 3q15_A          263 VLFGLSWTLCKAGQTQKAFQFIEEGLD  289 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            344444444444444444444444433

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.32  E-value=1.6e-10  Score=99.19  Aligned_cols=168  Identities=14%  Similarity=0.018  Sum_probs=143.6

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 008276          334 LRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC  410 (571)
Q Consensus       334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~  410 (571)
                      ...+..+...+...|++++|...++.+.+   .+...+..+...+...|++++|...++++.+. .+.+...+..+...+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~   86 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-APDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH
Confidence            34566677888999999999999999875   36678889999999999999999999999885 233567888899999


Q ss_pred             hcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 008276          411 SHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGI  488 (571)
Q Consensus       411 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~  488 (571)
                      ...|++++|...++++.+.  .+.+...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999874  3456788889999999999999999999987 3334 6788999999999999999999


Q ss_pred             HHHHHHHhhCCCCchh
Q 008276          489 LAADHIFHLAPNQSGY  504 (571)
Q Consensus       489 ~~~~~~~~~~p~~~~~  504 (571)
                      ..++++.+..|++...
T Consensus       165 ~~~~~~~~~~~~~~~~  180 (186)
T 3as5_A          165 PHFKKANELDEGASVE  180 (186)
T ss_dssp             HHHHHHHHHHHCCCGG
T ss_pred             HHHHHHHHcCCCchhh
Confidence            9999999998876643

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.27  E-value=2.7e-10  Score=110.45  Aligned_cols=225  Identities=9%  Similarity=-0.039  Sum_probs=169.5

Q ss_pred             HHHHhccCCchHHHHHHHHHHHHcCC-CC----ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC-----hhHHH
Q 008276          305 VLPACGDLSALLLGRKIHRYVERKKL-QP----NLRLENALVDMYAKCGSLTEARTVFDQMRC-----QD-----VVSWT  369 (571)
Q Consensus       305 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-----~~~~~  369 (571)
                      ....+...|++++|...++.+.+... .+    ...++..+..+|...|+++.|...+++..+     ++     ..+++
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  186 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF  186 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence            34456788999999999999886421 12    245677888999999999999988887652     22     34688


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc---CCCCCHHHHHH
Q 008276          370 SMISAYGMSGQGYDAVALFSKMLMS----GLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY---KLVPRIEHFAC  441 (571)
Q Consensus       370 ~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~  441 (571)
                      .+...|...|++++|++.|++..+.    +..+ ...++..+...+...|++++|...+++..+..   +.+....++..
T Consensus       187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  266 (378)
T 3q15_A          187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG  266 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence            8999999999999999999988762    1111 12367888889999999999999999987621   22223577888


Q ss_pred             HHHHHHhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 008276          442 LVDLLGRAGKVEEAYDLIKQM----PM--EPN-ERIWGSLVAACCLYSN---MDIGILAADHIFHLAPNQSGYYVLLSNI  511 (571)
Q Consensus       442 l~~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~  511 (571)
                      +...+.+.|++++|...+++.    ..  .|. ...+..+...+...++   +++|+..+++. ...|.....+..++..
T Consensus       267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~  345 (378)
T 3q15_A          267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAV  345 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHH
Confidence            999999999999999999876    11  232 3345555566667888   77787777762 2224455678899999


Q ss_pred             HHhcCCHHHHHHHHHHHHh
Q 008276          512 YAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       512 ~~~~g~~~~A~~~~~~m~~  530 (571)
                      |...|++++|..++++..+
T Consensus       346 y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          346 FESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH
Confidence            9999999999999998764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.21  E-value=2.3e-10  Score=105.75  Aligned_cols=222  Identities=16%  Similarity=0.161  Sum_probs=152.9

Q ss_pred             ccCCchHHHHHHHHHHHHc-------CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C----ChhHHHHH
Q 008276          310 GDLSALLLGRKIHRYVERK-------KLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC-------Q----DVVSWTSM  371 (571)
Q Consensus       310 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~l  371 (571)
                      ...|+++.|...+++..+.       ..+....++..+...|...|++++|...++++.+       +    ...++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            4567777777777776652       2233456778888999999999999998887652       1    23468888


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc-----C-CCCCHHH
Q 008276          372 ISAYGMSGQGYDAVALFSKMLMS------GLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQY-----K-LVPRIEH  438 (571)
Q Consensus       372 i~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~  438 (571)
                      ...|...|++++|...++++.+.      .-.|+ ..++..+...+...|++++|..+++++.+..     + .+.....
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            89999999999999999998763      11232 4478888889999999999999999887641     1 1223467


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC-C---------CCC-CHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhhCCCC
Q 008276          439 FACLVDLLGRAGKVEEAYDLIKQM-P---------MEP-NERIWGSLVAACCLYSN------MDIGILAADHIFHLAPNQ  501 (571)
Q Consensus       439 ~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~p~~  501 (571)
                      +..+..+|...|++++|...++++ .         ..+ ....|..+.......+.      +..+...++......|..
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV  251 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence            888899999999999999998876 1         122 22334333333333222      333333333333333556


Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276          502 SGYYVLLSNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       502 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                      ..++..++.+|...|++++|..++++..+.
T Consensus       252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            678999999999999999999999988653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.20  E-value=6.3e-09  Score=100.54  Aligned_cols=193  Identities=10%  Similarity=-0.053  Sum_probs=111.1

Q ss_pred             HHHHHHHhCCCHHHHHHHHccCCC-----CC----chhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008276          170 GLVAMYGKCGCLKEARRVLNDMPS-----KD----VVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS  240 (571)
Q Consensus       170 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~  240 (571)
                      .+...+...|++++|...+++...     .+    ..++..+...+...|++++|...+++.....              
T Consensus        58 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~--------------  123 (373)
T 1hz4_A           58 VLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI--------------  123 (373)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------
Confidence            344444555555555555544332     11    1235667778888899999998888775421              


Q ss_pred             hcCCCCccHHHHHHHHhhCCC---C-ChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCC--C--CHHHHHHHHHHhccC
Q 008276          241 VTNTSPENVLSVKEMFLKLDN---K-NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIE--P--NAISVASVLPACGDL  312 (571)
Q Consensus       241 ~~~~~~~~~~~a~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~--~--~~~~~~~ll~~~~~~  312 (571)
                                      .....   + ....+..+...+...|++++|...+++.......  +  ...++..+...+...
T Consensus       124 ----------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~  187 (373)
T 1hz4_A          124 ----------------NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR  187 (373)
T ss_dssp             ----------------HHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH
T ss_pred             ----------------HHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc
Confidence                            00000   0 1245666778889999999999999988754321  1  234566666777788


Q ss_pred             CchHHHHHHHHHHHHcCCCCCh-hHHH-----HHHHHHHhcCCHHHHHHHHhhCCCCCh-------hHHHHHHHHHHhcC
Q 008276          313 SALLLGRKIHRYVERKKLQPNL-RLEN-----ALVDMYAKCGSLTEARTVFDQMRCQDV-------VSWTSMISAYGMSG  379 (571)
Q Consensus       313 ~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~li~~~~~~~  379 (571)
                      |++++|...++........++. ..+.     ..+..+...|++++|...++....++.       ..+..+...+...|
T Consensus       188 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g  267 (373)
T 1hz4_A          188 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG  267 (373)
T ss_dssp             TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcC
Confidence            8888888888877654212111 1111     122335566777777777666654211       12344455555556


Q ss_pred             ChHHHHHHHHHHH
Q 008276          380 QGYDAVALFSKML  392 (571)
Q Consensus       380 ~~~~a~~~~~~m~  392 (571)
                      ++++|...+++..
T Consensus       268 ~~~~A~~~l~~a~  280 (373)
T 1hz4_A          268 EFEPAEIVLEELN  280 (373)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            6666555555543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.19  E-value=2.2e-09  Score=95.40  Aligned_cols=62  Identities=11%  Similarity=0.120  Sum_probs=54.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008276          473 SLVAACCLYSNMDIGILAADHIFHLAPNQS---GYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK  534 (571)
Q Consensus       473 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  534 (571)
                      .+...+.+.|++++|+..|+++++..|+++   .++..++.+|.+.|++++|.+.++.+...+..
T Consensus       152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence            456678899999999999999999999886   57999999999999999999999999877543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.18  E-value=4.9e-09  Score=95.39  Aligned_cols=175  Identities=6%  Similarity=-0.006  Sum_probs=100.3

Q ss_pred             HHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276          353 ARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTE  428 (571)
Q Consensus       353 a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  428 (571)
                      |...|++...   ++...+..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            4555554442   344445566666666777777777776665543312 334566666667777777777777777654


Q ss_pred             hcCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-
Q 008276          429 QYKLVP-----RIEHFACLVDL--LGRAG--KVEEAYDLIKQM-PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHL-  497 (571)
Q Consensus       429 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-  497 (571)
                      .   .|     +..+...++.+  ....|  +.++|..+|+++ ...|+...-..++.++.+.|++++|...++.+.+. 
T Consensus       165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~  241 (310)
T 3mv2_B          165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY  241 (310)
T ss_dssp             H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred             c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            3   34     23334444444  22223  667777777766 33344222233333566677777777777766554 


Q ss_pred             ---------CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          498 ---------APNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       498 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                               +|+++.+...++.+....|+  +|.++++++++..
T Consensus       242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~  283 (310)
T 3mv2_B          242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD  283 (310)
T ss_dssp             HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence                     36666666666666666665  6667776666554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.18  E-value=1.8e-10  Score=119.57  Aligned_cols=162  Identities=10%  Similarity=0.121  Sum_probs=131.2

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 008276          333 NLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD-SIAFVSVLS  408 (571)
Q Consensus       333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~  408 (571)
                      +...++.|..+|.+.|++++|.+.|++..+   .+...|+.+...|.+.|++++|++.|++.++  +.|+ ...|..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            456677777888888888888888877653   3566788888888889999999999998888  4564 558888888


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 008276          409 ACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDI  486 (571)
Q Consensus       409 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~  486 (571)
                      ++...|++++|++.|++..+.  .+.+...|..+..+|...|++++|++.|++. .+.| +...|..+...+...|++++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence            899999999999999988874  2345678888999999999999999999887 5566 57788888999999999999


Q ss_pred             HHHHHHHHHhhC
Q 008276          487 GILAADHIFHLA  498 (571)
Q Consensus       487 A~~~~~~~~~~~  498 (571)
                      |.+.+++++++.
T Consensus       164 A~~~~~kal~l~  175 (723)
T 4gyw_A          164 YDERMKKLVSIV  175 (723)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC
Confidence            999998887754

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.18  E-value=7.1e-10  Score=103.05  Aligned_cols=171  Identities=9%  Similarity=-0.054  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCC------
Q 008276          336 LENALVDMYAKCGSLTEARTVFDQMRC-----QD----VVSWTSMISAYGMS-GQGYDAVALFSKMLMSGLCPD------  399 (571)
Q Consensus       336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~------  399 (571)
                      +++.+..+|...|++++|...+++..+     .+    ..+++.+...|... |++++|+..|++..+.  .|+      
T Consensus        79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~  156 (292)
T 1qqe_A           79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVAL  156 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHH
Confidence            344444445555555555544444332     11    23566677777775 8888888888777662  221      


Q ss_pred             -HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH---
Q 008276          400 -SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI-----EHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNER---  469 (571)
Q Consensus       400 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~---  469 (571)
                       ..++..+...+...|++++|...|++..+...-.+..     ..+..+..++...|++++|...|++. .+.|+..   
T Consensus       157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  236 (292)
T 1qqe_A          157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR  236 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence             2356777777888888888888888877642222221     24566777777888888888888876 4444321   


Q ss_pred             ---HHHHHHHHHH--hcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 008276          470 ---IWGSLVAACC--LYSNMDIGILAADHIFHLAPNQSGYYVLL  508 (571)
Q Consensus       470 ---~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  508 (571)
                         .+..++.++.  ..+++++|+..|+++..++|.....+..+
T Consensus       237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~  280 (292)
T 1qqe_A          237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI  280 (292)
T ss_dssp             -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence               2334455553  35667788887777777776544333333

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.16  E-value=6.5e-11  Score=97.72  Aligned_cols=142  Identities=11%  Similarity=0.004  Sum_probs=109.7

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 008276          372 ISAYGMSGQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG  450 (571)
Q Consensus       372 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  450 (571)
                      ...+...|++++|+..+++...  ..|+.. .+..+...|...|++++|...|++..+.  .+.+...|..+..+|...|
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~   79 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE   79 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence            3445566778888888887665  344333 5666788888889999999998888874  2446678888888899999


Q ss_pred             CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhhCCCCchhHHHHHHHHHhcCC
Q 008276          451 KVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILA-ADHIFHLAPNQSGYYVLLSNIYAKAGR  517 (571)
Q Consensus       451 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~  517 (571)
                      ++++|+..|++. .+.| +...|..+...+.+.|++++|... ++++++++|+++.+|......+...|+
T Consensus        80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            999999988887 5566 577888888889999998776654 689999999999999998888888775

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.14  E-value=1.7e-09  Score=98.81  Aligned_cols=188  Identities=10%  Similarity=0.028  Sum_probs=117.9

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 008276          333 NLRLENALVDMYAKCGSLTEARTVFDQMRC--Q-D---VVSWTSMISAYGMSGQGYDAVALFSKMLMSGL-CPD-SIAFV  404 (571)
Q Consensus       333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~  404 (571)
                      +...+..+...+.+.|++++|...|+.+.+  | +   ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            334444555566666667777666666653  2 2   34566666677777777777777777766311 112 23455


Q ss_pred             HHHHHhhc--------CCCHHHHHHHHHHHHHhcCCCCCHH-H--------------HHHHHHHHHhcCCHHHHHHHHHh
Q 008276          405 SVLSACSH--------AGLLEEGRYYFKIMTEQYKLVPRIE-H--------------FACLVDLLGRAGKVEEAYDLIKQ  461 (571)
Q Consensus       405 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~-~--------------~~~l~~~~~~~g~~~~A~~~~~~  461 (571)
                      .+..++..        .|++++|...|+++.+.+.-.+... .              +..+...|.+.|++++|+..|++
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  173 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA  173 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            55666666        7777777777777766432222221 1              14567788888999999888887


Q ss_pred             C-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhCCCCch---hHHHHHHHHHhcCCHHH
Q 008276          462 M-PMEPN----ERIWGSLVAACCLY----------SNMDIGILAADHIFHLAPNQSG---YYVLLSNIYAKAGRWGD  520 (571)
Q Consensus       462 ~-~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~  520 (571)
                      + ...|+    ...+..+..++...          |++++|+..++++++..|+++.   +...+..++...|++++
T Consensus       174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~  250 (261)
T 3qky_A          174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG  250 (261)
T ss_dssp             HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence            7 22332    44666677777655          8889999999999999988854   34445555555554443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.14  E-value=1.8e-09  Score=86.90  Aligned_cols=128  Identities=17%  Similarity=0.204  Sum_probs=88.4

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHh
Q 008276          403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PME-PNERIWGSLVAACCL  480 (571)
Q Consensus       403 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~  480 (571)
                      +..+...+...|++++|..+++.+.+.  .+.+...+..++..+...|++++|...++++ ... .+...+..+...+..
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            444555556666666666666666543  1234455566666666666777776666665 222 245667777777788


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          481 YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       481 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      .|++++|...++++.+..|.+...+..++.++...|++++|...++++.+..
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  133 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD  133 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence            8888888888888888888888888888888888888888888888876543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.14  E-value=1.9e-09  Score=98.43  Aligned_cols=168  Identities=10%  Similarity=0.000  Sum_probs=138.7

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC-HH
Q 008276          363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD----SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR-IE  437 (571)
Q Consensus       363 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~  437 (571)
                      .+...+..+...+.+.|++++|+..|+++.+.  .|+    ...+..+..++...|++++|...|+++.+.+.-.|. ..
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            45667778888999999999999999999984  343    467888899999999999999999999986443333 45


Q ss_pred             HHHHHHHHHHh--------cCCHHHHHHHHHhC-CCCCC-HHHH-----------------HHHHHHHHhcCCHHHHHHH
Q 008276          438 HFACLVDLLGR--------AGKVEEAYDLIKQM-PMEPN-ERIW-----------------GSLVAACCLYSNMDIGILA  490 (571)
Q Consensus       438 ~~~~l~~~~~~--------~g~~~~A~~~~~~~-~~~p~-~~~~-----------------~~l~~~~~~~g~~~~A~~~  490 (571)
                      .+..+..++..        .|++++|...|+++ ...|+ ...+                 ..+...+...|++++|+..
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  170 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT  170 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            67788889988        99999999999987 33342 2233                 4567788899999999999


Q ss_pred             HHHHHhhCCCC---chhHHHHHHHHHhc----------CCHHHHHHHHHHHHhCC
Q 008276          491 ADHIFHLAPNQ---SGYYVLLSNIYAKA----------GRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       491 ~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~  532 (571)
                      |+++++..|++   +.++..++.+|...          |++++|...++++.+..
T Consensus       171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~  225 (261)
T 3qky_A          171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF  225 (261)
T ss_dssp             HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence            99999999884   45889999999877          99999999999998754

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.13  E-value=5.8e-10  Score=103.64  Aligned_cols=228  Identities=11%  Similarity=0.034  Sum_probs=158.2

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHhccC-C-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 008276          282 EAVDLYLQMEVHGIEPNAISVASVLPACGDL-S-ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQ  359 (571)
Q Consensus       282 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  359 (571)
                      +|.+++.+..+. .++....+ .++   ... + ++++|...|...               ...|...|++++|...|.+
T Consensus         3 ~a~~~~~~a~k~-~~~~~~~~-~~~---~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~   62 (292)
T 1qqe_A            3 DPVELLKRAEKK-GVPSSGFM-KLF---SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLK   62 (292)
T ss_dssp             CHHHHHHHHHHH-SSCCCTHH-HHH---SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHH
T ss_pred             cHHHHHHHHHHH-hCcCCCcc-hhc---CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence            466666666554 23222222 222   211 2 478888877765               3457778999988888876


Q ss_pred             CCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhhcC-CCHHHHHHHHH
Q 008276          360 MRC-----QD----VVSWTSMISAYGMSGQGYDAVALFSKMLMS----GLCPD-SIAFVSVLSACSHA-GLLEEGRYYFK  424 (571)
Q Consensus       360 ~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~-~~~~~a~~~~~  424 (571)
                      ..+     .+    ..+|+.+...|...|++++|+..|++..+.    |-... ..++..+...|... |++++|+..|+
T Consensus        63 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~  142 (292)
T 1qqe_A           63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE  142 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence            643     12    457899999999999999999999998762    11111 34788888999996 99999999999


Q ss_pred             HHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---H-----HHHHHHHHHHHhcCCHHHHHHHH
Q 008276          425 IMTEQYKLVPR----IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN---E-----RIWGSLVAACCLYSNMDIGILAA  491 (571)
Q Consensus       425 ~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~-----~~~~~l~~~~~~~g~~~~A~~~~  491 (571)
                      +..+...-..+    ..++..+...+.+.|++++|+..|++. ...|+   .     ..|..+..++...|++++|+..+
T Consensus       143 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  222 (292)
T 1qqe_A          143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL  222 (292)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            98764221112    356888999999999999999999987 32332   1     15677788888999999999999


Q ss_pred             HHHHhhCCCCchh-----HHHHHHHHH--hcCCHHHHHHHHHHHH
Q 008276          492 DHIFHLAPNQSGY-----YVLLSNIYA--KAGRWGDVKRVRKFMN  529 (571)
Q Consensus       492 ~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~m~  529 (571)
                      +++++++|.....     +..++.++.  ..+++++|+..++++.
T Consensus       223 ~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~  267 (292)
T 1qqe_A          223 QEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (292)
T ss_dssp             HGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence            9999999876553     345566664  4678999998886553

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.10  E-value=3.2e-09  Score=97.87  Aligned_cols=206  Identities=11%  Similarity=0.019  Sum_probs=118.8

Q ss_pred             hhhHHHHHHHHHHcCCchHHHHHHHHHHHC------CCCC-CHHHHHHHHHHhccCCchHHHHHHHHHHHHcC----CCC
Q 008276          264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVH------GIEP-NAISVASVLPACGDLSALLLGRKIHRYVERKK----LQP  332 (571)
Q Consensus       264 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~  332 (571)
                      ..++..+...|...|++++|+..+++..+.      +-.| ...++..+...+...|++++|...++.+.+..    .+.
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  122 (283)
T 3edt_B           43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF  122 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence            456778888888999999999988887653      1112 23456666666777777777777766655431    000


Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHHHHH
Q 008276          333 NLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS------GLCPD-SIAFVS  405 (571)
Q Consensus       333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~  405 (571)
                      +.                            ....++..+...|...|++++|...++++.+.      +-.|+ ..++..
T Consensus       123 ~~----------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  174 (283)
T 3edt_B          123 HP----------------------------DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN  174 (283)
T ss_dssp             CH----------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             Ch----------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            00                            01234555556666666666666666666552      11232 336667


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhc------CCCC-CHHHHHHHHHHHHhcC------CHHHHHHHHHhCC-CCC-CHHH
Q 008276          406 VLSACSHAGLLEEGRYYFKIMTEQY------KLVP-RIEHFACLVDLLGRAG------KVEEAYDLIKQMP-MEP-NERI  470 (571)
Q Consensus       406 l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~-~~p-~~~~  470 (571)
                      +...+...|++++|..+++++.+..      ...+ ....+..+...+...+      .+..+...++... ..| ...+
T Consensus       175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (283)
T 3edt_B          175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTT  254 (283)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            7777777788888887777766431      0111 1223333333333322      2444555555552 223 3557


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 008276          471 WGSLVAACCLYSNMDIGILAADHIFHL  497 (571)
Q Consensus       471 ~~~l~~~~~~~g~~~~A~~~~~~~~~~  497 (571)
                      +..+...|...|++++|...++++++.
T Consensus       255 ~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          255 LRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            788888899999999999999988764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.07  E-value=4.8e-10  Score=117.01  Aligned_cols=144  Identities=9%  Similarity=-0.088  Sum_probs=69.3

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008276          366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD  444 (571)
Q Consensus       366 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  444 (571)
                      ..+..+...+...|++++|+..|+++.+.  .| +...|..+..++...|++++|...|+++.+.  .+.+...+..+..
T Consensus       434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~  509 (681)
T 2pzi_A          434 ELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAA  509 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence            34444455555555555555555555442  22 2334444444555555555555555555442  1223344444555


Q ss_pred             HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 008276          445 LLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK  514 (571)
Q Consensus       445 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  514 (571)
                      ++.+.|++++ ++.|+++ ...| +...|..+..++...|++++|+..|+++++++|.+..++..++.++..
T Consensus       510 ~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          510 TAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             HHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred             HHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence            5555555555 5555444 2233 344455555555555555555555555555555555555555555444

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.07  E-value=2.9e-09  Score=98.53  Aligned_cols=174  Identities=9%  Similarity=-0.041  Sum_probs=139.5

Q ss_pred             HHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008276          351 TEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ  429 (571)
Q Consensus       351 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  429 (571)
                      +.....+......+...+..+...+...|++++|+..|++..+  ..| +...+..+...+...|++++|...++++...
T Consensus       103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~  180 (287)
T 3qou_A          103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ  180 (287)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred             HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence            3444444444444556677788888999999999999999988  455 5568888999999999999999999998754


Q ss_pred             cCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--chh
Q 008276          430 YKLVPRIEHF-ACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ--SGY  504 (571)
Q Consensus       430 ~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~  504 (571)
                         .|+.... ......+...++.++|.+.+++. ...| +...+..+...+...|++++|+..|+++++.+|++  ..+
T Consensus       181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a  257 (287)
T 3qou_A          181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT  257 (287)
T ss_dssp             ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred             ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence               4454332 23333466778888888888877 4455 67889999999999999999999999999999988  889


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          505 YVLLSNIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       505 ~~~l~~~~~~~g~~~~A~~~~~~m~  529 (571)
                      +..++.++...|+.++|...+++..
T Consensus       258 ~~~l~~~~~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          258 RXTFQEILAALGTGDALASXYRRQL  282 (287)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            9999999999999999999888754

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.05  E-value=8.9e-09  Score=82.75  Aligned_cols=131  Identities=20%  Similarity=0.264  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008276          367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL  446 (571)
Q Consensus       367 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  446 (571)
                      .|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++.+.  .+.+...+..+...+
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~   79 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY   79 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence            56777888888999999999999988742 235667888888888899999999999998874  244567788889999


Q ss_pred             HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 008276          447 GRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPN  500 (571)
Q Consensus       447 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  500 (571)
                      ...|++++|.+.++++ ...| +...+..+...+...|++++|...++++.+.+|.
T Consensus        80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            9999999999999887 3333 6778888899999999999999999999998875

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.03  E-value=9.2e-09  Score=93.58  Aligned_cols=215  Identities=9%  Similarity=-0.006  Sum_probs=149.1

Q ss_pred             HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 008276          270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGS  349 (571)
Q Consensus       270 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  349 (571)
                      +.++|...|+++..         ..-.|....+..+...+ ..+    +...++...+.+ .++...+..+..++...|+
T Consensus        51 ~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~  115 (310)
T 3mv2_B           51 KAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEELENLLKDK-QNSPYELYLLATAQAILGD  115 (310)
T ss_dssp             HHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence            34666777766532         11234433444433333 222    566677666554 4555555678888999999


Q ss_pred             HHHHHHHHhhCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHh--hc--CCC
Q 008276          350 LTEARTVFDQMRC-----QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-----DSIAFVSVLSAC--SH--AGL  415 (571)
Q Consensus       350 ~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~~~~~~l~~~~--~~--~~~  415 (571)
                      +++|.+++.....     .+...+..++..+.+.|+.+.|.+.+++|.+  ..|     +..+...++.++  ..  .++
T Consensus       116 ~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~  193 (310)
T 3mv2_B          116 LDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIEDTVSGDNEMILNLAESYIKFATNKET  193 (310)
T ss_dssp             HHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTCST
T ss_pred             HHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccccccchHHHHHHHHHHHHHHhCCcc
Confidence            9999999988743     2456788889999999999999999999988  567     355666666552  22  348


Q ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC----------CC-CHHHHHHHHHHHHhcCC
Q 008276          416 LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PM----------EP-NERIWGSLVAACCLYSN  483 (571)
Q Consensus       416 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p-~~~~~~~l~~~~~~~g~  483 (571)
                      +.+|..+|+++.+.   .|+......+..++.+.|++++|.+.++.+ ..          .| ++.++..+|......|+
T Consensus       194 ~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk  270 (310)
T 3mv2_B          194 ATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL  270 (310)
T ss_dssp             TTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence            99999999998754   455333334444889999999999999865 21          25 56677566666666777


Q ss_pred             HHHHHHHHHHHHhhCCCCchhHH
Q 008276          484 MDIGILAADHIFHLAPNQSGYYV  506 (571)
Q Consensus       484 ~~~A~~~~~~~~~~~p~~~~~~~  506 (571)
                        +|.++++++.+..|+++.+..
T Consensus       271 --~a~~l~~qL~~~~P~hp~i~d  291 (310)
T 3mv2_B          271 --DTEDLTNQLVKLDHEHAFIKH  291 (310)
T ss_dssp             --TTHHHHHHHHHTTCCCHHHHH
T ss_pred             --HHHHHHHHHHHhCCCChHHHH
Confidence              899999999999999875443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.01  E-value=4.1e-09  Score=108.11  Aligned_cols=159  Identities=14%  Similarity=0.040  Sum_probs=125.1

Q ss_pred             cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHH
Q 008276          347 CGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYY  422 (571)
Q Consensus       347 ~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~  422 (571)
                      .|++++|...+++..+   .+...|..+...+...|++++|.+.|++..+.  .| +...+..+...+...|++++|...
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4788999999998875   35678999999999999999999999999984  45 466888899999999999999999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhh
Q 008276          423 FKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLY---SNMDIGILAADHIFHL  497 (571)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~  497 (571)
                      +++..+.  .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+...   |++++|...++++++.
T Consensus        80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            9999875  2445788899999999999999999999987 4445 677888899999999   9999999999999999


Q ss_pred             CCCCchhHHHHH
Q 008276          498 APNQSGYYVLLS  509 (571)
Q Consensus       498 ~p~~~~~~~~l~  509 (571)
                      +|.+...+..++
T Consensus       158 ~p~~~~~~~~l~  169 (568)
T 2vsy_A          158 GVGAVEPFAFLS  169 (568)
T ss_dssp             TCCCSCHHHHTT
T ss_pred             CCcccChHHHhC
Confidence            999988888776

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.01  E-value=3.1e-08  Score=86.99  Aligned_cols=162  Identities=12%  Similarity=-0.059  Sum_probs=128.9

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC----CHHHHHHHHHHHHHhcCCCCCHHH
Q 008276          363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAG----LLEEGRYYFKIMTEQYKLVPRIEH  438 (571)
Q Consensus       363 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~  438 (571)
                      .++..+..+...|...+++++|+.+|++..+.|   +...+..+...|.. +    ++++|..+|++..+.    .+...
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a   87 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG   87 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence            466677777888888888999999998888865   56667777777777 6    889999999988663    35667


Q ss_pred             HHHHHHHHHh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhHH
Q 008276          439 FACLVDLLGR----AGKVEEAYDLIKQM-PMEPN---ERIWGSLVAACCL----YSNMDIGILAADHIFHLAPNQSGYYV  506 (571)
Q Consensus       439 ~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~  506 (571)
                      +..|...|..    .+++++|.+.|++. ...|.   +..+..|...|..    .+++++|+..|+++.+. |.++..+.
T Consensus        88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~  166 (212)
T 3rjv_A           88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY  166 (212)
T ss_dssp             HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred             HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence            7778888876    78899999999887 44443   6788888888887    78899999999999888 56677888


Q ss_pred             HHHHHHHhc-C-----CHHHHHHHHHHHHhCCC
Q 008276          507 LLSNIYAKA-G-----RWGDVKRVRKFMNSKGI  533 (571)
Q Consensus       507 ~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~  533 (571)
                      .|+.+|... |     ++++|...+++..+.|.
T Consensus       167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            999988764 3     89999999998887764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.98  E-value=1.2e-08  Score=95.38  Aligned_cols=219  Identities=14%  Similarity=0.022  Sum_probs=154.8

Q ss_pred             cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc-CCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 008276          277 NSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD-LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEART  355 (571)
Q Consensus       277 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  355 (571)
                      .|++++|.+++++..+.. +..          +.. .++++.|...|..+               ...|...|++++|..
T Consensus         4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~   57 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD   57 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence            467788888888776532 111          122 46777777777654               346777888888888


Q ss_pred             HHhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHhhcCCCHHHHHH
Q 008276          356 VFDQMRC-----QD----VVSWTSMISAYGMSGQGYDAVALFSKMLMSG---LCPD--SIAFVSVLSACSHAGLLEEGRY  421 (571)
Q Consensus       356 ~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~--~~~~~~l~~~~~~~~~~~~a~~  421 (571)
                      .|.+..+     .+    ..+|+.+...|...|++++|+..|++..+.-   -.+.  ..++..+...|.. |++++|+.
T Consensus        58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~  136 (307)
T 2ifu_A           58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH  136 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence            8776643     12    3468888899999999999999999876521   1121  3467788888888 99999999


Q ss_pred             HHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 008276          422 YFKIMTEQYKLVPR----IEHFACLVDLLGRAGKVEEAYDLIKQM-PM---EPN----ERIWGSLVAACCLYSNMDIGIL  489 (571)
Q Consensus       422 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~A~~  489 (571)
                      .|++..+...-..+    ..++..+...|.+.|++++|++.|++. .+   .++    ...+..++..+...|++++|..
T Consensus       137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~  216 (307)
T 2ifu_A          137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK  216 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            99988764221111    357888999999999999999999987 11   112    2356666677778899999999


Q ss_pred             HHHHHHhhCCCCchh-----HHHHHHHHHhcCCHHHHHHH
Q 008276          490 AADHIFHLAPNQSGY-----YVLLSNIYAKAGRWGDVKRV  524 (571)
Q Consensus       490 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~  524 (571)
                      .|++++ ..|.....     ...++.++ ..|+.+.+.++
T Consensus       217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence            999999 88865443     33455544 56777766663

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.98  E-value=6e-10  Score=91.89  Aligned_cols=123  Identities=12%  Similarity=-0.028  Sum_probs=102.2

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 008276          406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPR-IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYS  482 (571)
Q Consensus       406 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g  482 (571)
                      |...+...|++++|+..++....   ..|+ ...+..+...|.+.|++++|++.|++. .+.| +..+|..+...+...|
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~   79 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE   79 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            34556677899999999988764   2333 345667899999999999999999988 5566 7889999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHH-HHHHHhC
Q 008276          483 NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRV-RKFMNSK  531 (571)
Q Consensus       483 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~  531 (571)
                      ++++|+..|+++++++|+++.+|..++.+|.+.|++++|.+. +++..+.
T Consensus        80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l  129 (150)
T 4ga2_A           80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL  129 (150)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999887765 5776654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.98  E-value=4e-09  Score=86.48  Aligned_cols=97  Identities=11%  Similarity=0.004  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 008276          436 IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA  513 (571)
Q Consensus       436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  513 (571)
                      ...+..+...+.+.|++++|+..|+++ ...| +...|..+..++...|++++|+..|+++++++|+++.+|..++.+|.
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~  115 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence            356777788888888888888888887 4455 67788888888888999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhCC
Q 008276          514 KAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       514 ~~g~~~~A~~~~~~m~~~~  532 (571)
                      ..|++++|...|++..+..
T Consensus       116 ~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          116 RLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HTTCHHHHHHHHHHHHHHC
T ss_pred             HcCCHHHHHHHHHHHHHhC
Confidence            9999999999988887654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.97  E-value=4.3e-09  Score=89.52  Aligned_cols=157  Identities=9%  Similarity=0.018  Sum_probs=99.9

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-H
Q 008276          369 TSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL-L  446 (571)
Q Consensus       369 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~  446 (571)
                      ..+...+...|++++|+..|++..+  ..| +...+..+...+...|++++|...++.+....   |+...+..+... +
T Consensus        10 ~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~   84 (176)
T 2r5s_A           10 LKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKLEL   84 (176)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHHHH
Confidence            3344455566666666666666554  233 33455566666666666666666666655431   233222222111 1


Q ss_pred             HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--chhHHHHHHHHHhcCCHHHHH
Q 008276          447 GRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ--SGYYVLLSNIYAKAGRWGDVK  522 (571)
Q Consensus       447 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~  522 (571)
                      ...+...+|...+++. ...| +...+..+...+...|++++|+..|+++++.+|+.  ...+..++.++...|+.++|.
T Consensus        85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            1222223356666655 3455 57788888888889999999999999999988764  558889999999999999999


Q ss_pred             HHHHHHHh
Q 008276          523 RVRKFMNS  530 (571)
Q Consensus       523 ~~~~~m~~  530 (571)
                      ..+++...
T Consensus       165 ~~y~~al~  172 (176)
T 2r5s_A          165 SKYRRQLY  172 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.97  E-value=6.1e-09  Score=82.75  Aligned_cols=108  Identities=7%  Similarity=-0.049  Sum_probs=74.1

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 008276          402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACC  479 (571)
Q Consensus       402 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~  479 (571)
                      .+......+.+.|++++|+..|++..+.  .+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++.
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            5556666677777777777777776653  2345566667777777777777777777765 3344 4666777777777


Q ss_pred             hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 008276          480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNI  511 (571)
Q Consensus       480 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  511 (571)
                      ..|++++|+..|+++++++|++..++..+..+
T Consensus        93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            77777777777777777777777777666554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.94  E-value=2e-08  Score=87.98  Aligned_cols=128  Identities=9%  Similarity=0.035  Sum_probs=98.4

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 008276          369 TSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG  447 (571)
Q Consensus       369 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  447 (571)
                      ..+...|.+.|++++|+..|++..+  ..| +...+..+...+...|++++|...|+++.+.  .+.+...+..+..+|.
T Consensus        58 ~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~  133 (208)
T 3urz_A           58 TELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYY  133 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence            4488889999999999999999998  455 5668888999999999999999999999874  2445678888888887


Q ss_pred             hcCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 008276          448 RAGK--VEEAYDLIKQMPMEPNE--RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ  501 (571)
Q Consensus       448 ~~g~--~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  501 (571)
                      ..|.  .+.+...+++.. .|++  ..+.....++...|++++|+..|++++++.|++
T Consensus       134 ~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          134 LTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             HHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence            6654  445566666662 3443  344445566677899999999999999999963

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.93  E-value=3.5e-08  Score=103.00  Aligned_cols=188  Identities=14%  Similarity=0.038  Sum_probs=140.2

Q ss_pred             ccCCchHHHHHHHHHHH--------HcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhc
Q 008276          310 GDLSALLLGRKIHRYVE--------RKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMS  378 (571)
Q Consensus       310 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~  378 (571)
                      ...|++++|.+.++.+.        +.. +.+...+..+..+|...|++++|...|+++.+   .+...|..+..++...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence            67788899998888887        433 45567777888888999999999999988774   4667888888899999


Q ss_pred             CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008276          379 GQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYD  457 (571)
Q Consensus       379 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  457 (571)
                      |++++|++.|++..+  ..| +...+..+..++...|++++ ...|+++.+.  .+.+...|..+..++.+.|++++|++
T Consensus       481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999888  445 45678888888999999999 9999988874  24456788889999999999999999


Q ss_pred             HHHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhhCCCCch
Q 008276          458 LIKQM-PMEPN-ERIWGSLVAACCLYSN-----MDIGILAADHIFHLAPNQSG  503 (571)
Q Consensus       458 ~~~~~-~~~p~-~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~  503 (571)
                      .|+++ ...|+ ...|..+..++...++     .+...+..+......+.++.
T Consensus       556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~  608 (681)
T 2pzi_A          556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR  608 (681)
T ss_dssp             HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred             HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence            99988 66775 5567777777766555     23333334444444444433

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.93  E-value=1.9e-08  Score=103.12  Aligned_cols=146  Identities=12%  Similarity=-0.021  Sum_probs=90.2

Q ss_pred             CCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 008276          312 LSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALF  388 (571)
Q Consensus       312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~  388 (571)
                      .|++++|...++++.+.. +.+...+..+...|...|++++|.+.+++..+   .+...|..+...|...|++++|.+.|
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            356777777777776654 34556677777777777788888777777654   34566777777777778888888877


Q ss_pred             HHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 008276          389 SKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA---GKVEEAYDLIKQM  462 (571)
Q Consensus       389 ~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~  462 (571)
                      ++..+.  .| +...+..+..++...|++++|.+.+++..+.  .+.+...+..+..++...   |+.++|.+.+++.
T Consensus        81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a  154 (568)
T 2vsy_A           81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA  154 (568)
T ss_dssp             HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            777773  33 4556777777777777888888777777664  233456677777777777   7777777777766

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.91  E-value=2.7e-08  Score=87.06  Aligned_cols=159  Identities=11%  Similarity=0.025  Sum_probs=118.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHH----------------HHHHhhcCCCHHHHHHHHHHHHHhcC
Q 008276          369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDS-IAFVS----------------VLSACSHAGLLEEGRYYFKIMTEQYK  431 (571)
Q Consensus       369 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~  431 (571)
                      ......+...|++++|+..|++..+  ..|+. ..|..                +..++...|++++|...|++..+.  
T Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--   83 (208)
T 3urz_A            8 LQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--   83 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence            3344556677788888888877777  44543 34555                888899999999999999999875  


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCCCchhHHH
Q 008276          432 LVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSN--MDIGILAADHIFHLAPNQSGYYVL  507 (571)
Q Consensus       432 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~  507 (571)
                      .+.+...+..+..++...|++++|+..|+++ ...| +..+|..+...+...|+  .+.+...++++....| ....+..
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~  162 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYR  162 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHH
Confidence            3456788999999999999999999999988 5566 67788888888766554  4456666666553322 2235667


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          508 LSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       508 l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      .+.++...|++++|+..+++..+..
T Consensus       163 ~g~~~~~~~~~~~A~~~~~~al~l~  187 (208)
T 3urz_A          163 DGLSKLFTTRYEKARNSLQKVILRF  187 (208)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhC
Confidence            7888889999999999999987654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.90  E-value=2.4e-07  Score=85.17  Aligned_cols=230  Identities=9%  Similarity=-0.010  Sum_probs=131.3

Q ss_pred             HHcCCc-hHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC--chHHHHHHHHHHHHcCCCCChhHHHHHHHHH----Hhc
Q 008276          275 ANNSMP-AEAVDLYLQMEVHGIEPNAISVASVLPACGDLS--ALLLGRKIHRYVERKKLQPNLRLENALVDMY----AKC  347 (571)
Q Consensus       275 ~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~  347 (571)
                      .+.|.+ ++|++++++++..+ +-+...++.--..+...+  +++++...++.+...+ +-+..+|+.-...+    ...
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l  120 (306)
T 3dra_A           43 MKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN  120 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence            344444 57888888887743 223445555555566666  7888888888877765 33444554333333    333


Q ss_pred             ---CCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCC----
Q 008276          348 ---GSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGY--DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL----  415 (571)
Q Consensus       348 ---~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~----  415 (571)
                         ++++++..+++.+.+   .+...|+.-.-.+.+.|.++  ++++.++++.+... -|...|+.-...+...+.    
T Consensus       121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~  199 (306)
T 3dra_A          121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATD  199 (306)
T ss_dssp             TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCH
T ss_pred             cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchh
Confidence               566666666666653   35555666555566666666  66666666666422 244455555445555554    


Q ss_pred             --HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCHHHH
Q 008276          416 --LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE-AYDLIKQM-PM----EPNERIWGSLVAACCLYSNMDIG  487 (571)
Q Consensus       416 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~~~A  487 (571)
                        ++++++.++.+...  .+-|...|+.+...+.+.|+..+ +.++..++ ..    ..++..+..++..+.+.|+.++|
T Consensus       200 ~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A  277 (306)
T 3dra_A          200 NTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES  277 (306)
T ss_dssp             HHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence              66666666666553  23455556666666666655333 33445544 11    12455566666666666666666


Q ss_pred             HHHHHHHHh-hCCCCchhHHHHH
Q 008276          488 ILAADHIFH-LAPNQSGYYVLLS  509 (571)
Q Consensus       488 ~~~~~~~~~-~~p~~~~~~~~l~  509 (571)
                      +++++.+.+ .+|.....|...+
T Consensus       278 ~~~~~~l~~~~Dpir~~yW~~~~  300 (306)
T 3dra_A          278 RTVYDLLKSKYNPIRSNFWDYQI  300 (306)
T ss_dssp             HHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             HHHHHHHHhccChHHHHHHHHHH
Confidence            666666664 5666555555443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.90  E-value=8.9e-09  Score=96.35  Aligned_cols=197  Identities=8%  Similarity=-0.038  Sum_probs=148.8

Q ss_pred             cCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 008276          311 DLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSK  390 (571)
Q Consensus       311 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  390 (571)
                      ..|++++|.+++++..+.... .      +   +...++++.|...|..           ....|...|++++|...|.+
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~-~------~---~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~   61 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKT-S------F---MKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ   61 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCC-C------S---SSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccc-c------c---cCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence            357788899999888764311 1      0   1114788888887765           45678889999999999998


Q ss_pred             HHHC----CCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 008276          391 MLMS----GLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR----IEHFACLVDLLGRAGKVEEAYDLIKQ  461 (571)
Q Consensus       391 m~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~  461 (571)
                      ..+.    |-.+. ..+|..+...|...|++++|...|++..+.+.-..+    ..++..+..+|.. |++++|++.+++
T Consensus        62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~  140 (307)
T 2ifu_A           62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ  140 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence            7663    11111 347888889999999999999999988764221212    3567888899988 999999999987


Q ss_pred             C-CCC-----C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc------hhHHHHHHHHHhcCCHHHHHHHHHH
Q 008276          462 M-PME-----P--NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS------GYYVLLSNIYAKAGRWGDVKRVRKF  527 (571)
Q Consensus       462 ~-~~~-----p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~  527 (571)
                      . .+.     +  ...++..+...+...|++++|+..|++++++.|.+.      ..+..++.++...|++++|...+++
T Consensus       141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~  220 (307)
T 2ifu_A          141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE  220 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            7 111     1  145788889999999999999999999999765433      3677778888889999999999999


Q ss_pred             HH
Q 008276          528 MN  529 (571)
Q Consensus       528 m~  529 (571)
                      ..
T Consensus       221 al  222 (307)
T 2ifu_A          221 SY  222 (307)
T ss_dssp             HT
T ss_pred             Hh
Confidence            87

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.90  E-value=1.2e-08  Score=80.94  Aligned_cols=101  Identities=11%  Similarity=0.117  Sum_probs=90.7

Q ss_pred             CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 008276          432 LVPRI-EHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL  508 (571)
Q Consensus       432 ~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  508 (571)
                      +.|+. ..+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            34443 56778899999999999999999987 5555 788999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          509 SNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       509 ~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      +.+|...|++++|.+.+++..+..
T Consensus        88 g~~~~~~~~~~~A~~~~~~al~l~  111 (126)
T 4gco_A           88 AACLVAMREWSKAQRAYEDALQVD  111 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHC
Confidence            999999999999999999988654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.90  E-value=5.2e-07  Score=83.66  Aligned_cols=160  Identities=10%  Similarity=-0.001  Sum_probs=120.4

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC----HHHHH
Q 008276          370 SMISAYGMSGQGYDAVALFSKMLMSGL-CPDSI----AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR----IEHFA  440 (571)
Q Consensus       370 ~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~  440 (571)
                      ..+..+...|++++|..++++..+... .|+..    .+..+...+...+++++|...++++.+...-.++    ..+++
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            346677888999999999998887421 22211    2334666677788999999999998874222233    23688


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC-----C--CC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhH
Q 008276          441 CLVDLLGRAGKVEEAYDLIKQM-----P--ME-P-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ------SGYY  505 (571)
Q Consensus       441 ~l~~~~~~~g~~~~A~~~~~~~-----~--~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~  505 (571)
                      .+...|...|++++|...++++     .  .. + ...++..+...|...|++++|+..+++++++.+..      ..+|
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            8999999999999999888876     1  11 1 23477888899999999999999999998865322      5689


Q ss_pred             HHHHHHHHhcCC-HHHHHHHHHHHH
Q 008276          506 VLLSNIYAKAGR-WGDVKRVRKFMN  529 (571)
Q Consensus       506 ~~l~~~~~~~g~-~~~A~~~~~~m~  529 (571)
                      ..++.+|.+.|+ +++|.+.+++..
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            999999999995 699999988876

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.87  E-value=5.7e-09  Score=85.68  Aligned_cols=91  Identities=11%  Similarity=0.089  Sum_probs=41.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 008276          439 FACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG  516 (571)
Q Consensus       439 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  516 (571)
                      +..+...+...|++++|...|+++ ...| +...|..+..++...|++++|+..|+++++++|+++.++..++.+|...|
T Consensus        24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g  103 (148)
T 2vgx_A           24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXG  103 (148)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence            333444444444444444444443 2222 34444444444444444444444444444444444444444444444444


Q ss_pred             CHHHHHHHHHHHH
Q 008276          517 RWGDVKRVRKFMN  529 (571)
Q Consensus       517 ~~~~A~~~~~~m~  529 (571)
                      ++++|...+++..
T Consensus       104 ~~~~A~~~~~~al  116 (148)
T 2vgx_A          104 ELAEAESGLFLAQ  116 (148)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            4444444444443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.87  E-value=4.4e-07  Score=90.31  Aligned_cols=376  Identities=8%  Similarity=-0.064  Sum_probs=195.6

Q ss_pred             hCC-ChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC--CChhhHHHHHHHHHHcCC-hhHHH
Q 008276           40 KYP-DIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN--KNVVFFNVLIRSYVNNYL-YYDAL  115 (571)
Q Consensus        40 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~-~~~A~  115 (571)
                      +.| +++.|+.+|+... ..-  |.              |+++.+..+|++...  |+...|...+....+.+. .+...
T Consensus         6 ~~~~~i~~aR~vyer~l-~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~   68 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHAR-RLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLY   68 (493)
T ss_dssp             ------CCHHHHHHHHH-HHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTH
T ss_pred             HcCcchHHHHHHHHHHH-HHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHH
Confidence            446 3777888888776 322  11              788888888887654  777788887777776663 34456


Q ss_pred             HHHHHHHhC-CCCC-CcccHHHHHHHhhc----CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHc
Q 008276          116 HVYKNMSVH-GFDP-DCYTYPCVLKACSG----SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLN  189 (571)
Q Consensus       116 ~~~~~m~~~-g~~p-~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  189 (571)
                      .+|+..... |..| +...|...+.-+..    .++.+.+..+|+..+......-...|......-. ......+..++ 
T Consensus        69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~-~~~~~~~~~~~-  146 (493)
T 2uy1_A           69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFEL-ELNKITGKKIV-  146 (493)
T ss_dssp             HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH-HHCHHHHHHHH-
T ss_pred             HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHH-HhccccHHHHH-
Confidence            677766553 3222 44555555554432    2456667777777765211111112221111111 11111122111 


Q ss_pred             cCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHH
Q 008276          190 DMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNV  269 (571)
Q Consensus       190 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  269 (571)
                                    .-..  +.+..|..+++.+...                              +..   .+...|..
T Consensus       147 --------------~~~~--~~y~~ar~~y~~~~~~------------------------------~~~---~s~~~W~~  177 (493)
T 2uy1_A          147 --------------GDTL--PIFQSSFQRYQQIQPL------------------------------IRG---WSVKNAAR  177 (493)
T ss_dssp             --------------HHHH--HHHHHHHHHHHHHHHH------------------------------HHT---CSHHHHHH
T ss_pred             --------------HHHh--HHHHHHHHHHHHHHHH------------------------------Hhh---ccHHHHHH
Confidence                          1110  1233344444333210                              000   01122322


Q ss_pred             HHHHHHHcC-------CchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 008276          270 MIAVYANNS-------MPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD  342 (571)
Q Consensus       270 l~~~~~~~g-------~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  342 (571)
                      .+..-...+       ..+++..+|++++... +-+...|...+.-+...|+.+.|..+++.....  +.+...+..   
T Consensus       178 y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~---  251 (493)
T 2uy1_A          178 LIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY---  251 (493)
T ss_dssp             HHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH---
T ss_pred             HHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH---
Confidence            222211110       0234556666666542 334556666666666677777777777777766  333332221   


Q ss_pred             HHHhcCCHHHH-HHHHhhCC------------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008276          343 MYAKCGSLTEA-RTVFDQMR------------CQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA  409 (571)
Q Consensus       343 ~~~~~~~~~~a-~~~~~~~~------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~  409 (571)
                       |....+.++. ..+.+...            ......|...+....+.++.+.|..+|+++ .. ...+...|...+..
T Consensus       252 -y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~l  328 (493)
T 2uy1_A          252 -YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFI  328 (493)
T ss_dssp             -HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHH
T ss_pred             -HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHH
Confidence             2111111111 11111110            011234666666666777888898998888 32 12344444332222


Q ss_pred             hhc-CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008276          410 CSH-AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGI  488 (571)
Q Consensus       410 ~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~  488 (571)
                      -.. .++.+.|..+|+...+.+  +.++..+...++...+.|+.+.|..+|+++.  .....|...+..-...|+.+.+.
T Consensus       329 E~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r  404 (493)
T 2uy1_A          329 EYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFR  404 (493)
T ss_dssp             HHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHH
Confidence            122 236888999998888753  2334556667777788888899999998872  35667777777777788888888


Q ss_pred             HHHHHHHh
Q 008276          489 LAADHIFH  496 (571)
Q Consensus       489 ~~~~~~~~  496 (571)
                      .+++++.+
T Consensus       405 ~v~~~~~~  412 (493)
T 2uy1_A          405 ELVDQKMD  412 (493)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887765

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.86  E-value=6.6e-08  Score=84.94  Aligned_cols=128  Identities=9%  Similarity=-0.107  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008276          367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL  446 (571)
Q Consensus       367 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  446 (571)
                      .+..+...+...|++++|+..|++.    +.|+...+..+...+...|++++|...+++..+.  .+.+...+..+..+|
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~   81 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence            3555666777888888888888766    3557777777888888888888888888887764  244556777778888


Q ss_pred             HhcCCHHHHHHHHHhC-CCCC-----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 008276          447 GRAGKVEEAYDLIKQM-PMEP-----------------NERIWGSLVAACCLYSNMDIGILAADHIFHLAPN  500 (571)
Q Consensus       447 ~~~g~~~~A~~~~~~~-~~~p-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  500 (571)
                      ...|++++|.+.|++. ...|                 ....+..+..++...|++++|...++++.+..|.
T Consensus        82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  153 (213)
T 1hh8_A           82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  153 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence            8888888888887766 2222                 1256677777777788888888888888777764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.86  E-value=1.7e-06  Score=79.59  Aligned_cols=213  Identities=11%  Similarity=0.081  Sum_probs=170.2

Q ss_pred             chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC--CHHHHHHHHhhCCC---CChhHHHHHHHHH----Hhc---CCh
Q 008276          314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG--SLTEARTVFDQMRC---QDVVSWTSMISAY----GMS---GQG  381 (571)
Q Consensus       314 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~li~~~----~~~---~~~  381 (571)
                      ..++|...++.++..+ +-+..+++.--.++...+  +++++++.++.+..   .+...|+.-...+    ...   +++
T Consensus        48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~  126 (306)
T 3dra_A           48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP  126 (306)
T ss_dssp             CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred             CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence            3467888888888876 455667787777888888  99999999999875   3555676655555    455   789


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC------HH
Q 008276          382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE--EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK------VE  453 (571)
Q Consensus       382 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~  453 (571)
                      ++++++++++.+.. +-|..+|+.-.-.+...|.++  +++++++++.+.  .+-|...|+....++.+.|+      ++
T Consensus       127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~  203 (306)
T 3dra_A          127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTID  203 (306)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHH
Confidence            99999999999852 336678877777777788888  999999999985  34577788877777777776      89


Q ss_pred             HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhhC---CCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 008276          454 EAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDI-GILAADHIFHLA---PNQSGYYVLLSNIYAKAGRWGDVKRVRKF  527 (571)
Q Consensus       454 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  527 (571)
                      ++++.++++ ...| |...|+.+...+.+.|+... ...+.+++.+++   |.++.++..++.+|.+.|+.++|.++++.
T Consensus       204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~  283 (306)
T 3dra_A          204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL  283 (306)
T ss_dssp             HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence            999999877 4456 88899998888888887544 666888777776   88899999999999999999999999999


Q ss_pred             HHh
Q 008276          528 MNS  530 (571)
Q Consensus       528 m~~  530 (571)
                      +.+
T Consensus       284 l~~  286 (306)
T 3dra_A          284 LKS  286 (306)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            876

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.86  E-value=3.5e-08  Score=83.74  Aligned_cols=156  Identities=10%  Similarity=-0.048  Sum_probs=114.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhc
Q 008276          337 ENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSA-CSH  412 (571)
Q Consensus       337 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-~~~  412 (571)
                      +..+...+...|++++|...|+...+   .+...+..+...+...|++++|+..+++..+.  .|+...+...... +..
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ   86 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence            34556677888999999999988875   45677888888889999999999999887763  3444333222211 112


Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 008276          413 AGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN---ERIWGSLVAACCLYSNMDIGI  488 (571)
Q Consensus       413 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~A~  488 (571)
                      .+....|...+++..+.  .+.+...+..+..++...|++++|...|+++ ...|+   ...+..+...+...|+.++|.
T Consensus        87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            22233467888887764  2345678888899999999999999999887 55554   457888888899999999999


Q ss_pred             HHHHHHHh
Q 008276          489 LAADHIFH  496 (571)
Q Consensus       489 ~~~~~~~~  496 (571)
                      ..|++++.
T Consensus       165 ~~y~~al~  172 (176)
T 2r5s_A          165 SKYRRQLY  172 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.86  E-value=4.6e-08  Score=86.81  Aligned_cols=187  Identities=9%  Similarity=-0.057  Sum_probs=105.0

Q ss_pred             HHHHHHHHhccCCchHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChh----HHHHHH
Q 008276          301 SVASVLPACGDLSALLLGRKIHRYVERKKLQP--NLRLENALVDMYAKCGSLTEARTVFDQMRC--QDVV----SWTSMI  372 (571)
Q Consensus       301 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~----~~~~li  372 (571)
                      .+..+...+...|++++|...|+.+.+.....  ....+..+..+|.+.|++++|...|+.+.+  |+..    .+..+.
T Consensus         6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g   85 (225)
T 2yhc_A            6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG   85 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence            34444555666677777777777766643211  123455556666666666666666666543  2211    233333


Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHH---------------
Q 008276          373 SAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIE---------------  437 (571)
Q Consensus       373 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---------------  437 (571)
                      .++...+..     .+            ..|..+...+...|++++|...|+++.+.+.-.+...               
T Consensus        86 ~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~  148 (225)
T 2yhc_A           86 LTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAK  148 (225)
T ss_dssp             HHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHH
Confidence            333331100     00            0000111111224455555555555554321111111               


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 008276          438 HFACLVDLLGRAGKVEEAYDLIKQM-PMEPN----ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY  504 (571)
Q Consensus       438 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  504 (571)
                      ....+...|.+.|++++|+..|+++ ...|+    ...+..+..++.+.|+.++|+..++++....|++...
T Consensus       149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~  220 (225)
T 2yhc_A          149 YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH  220 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence            1134677888999999999999987 33443    2567888899999999999999999999888876543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.83  E-value=1.2e-07  Score=87.99  Aligned_cols=162  Identities=9%  Similarity=-0.036  Sum_probs=111.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCC--CCC--HHH
Q 008276          368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDS-----IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKL--VPR--IEH  438 (571)
Q Consensus       368 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~~~  438 (571)
                      +...+..+...|++++|.+.+.+..+.....+.     ..+..+...+...|++++|...+++..+....  .+.  ..+
T Consensus        78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  157 (293)
T 2qfc_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence            344556677788888888888877764222111     12334555567778888888888887643111  111  347


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------Cch
Q 008276          439 FACLVDLLGRAGKVEEAYDLIKQM----PMEPN-----ERIWGSLVAACCLYSNMDIGILAADHIFHLAPN------QSG  503 (571)
Q Consensus       439 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~  503 (571)
                      ++.+...|...|++++|...++++    ...|+     ..++..+...|...|++++|+..++++++..+.      -..
T Consensus       158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~  237 (293)
T 2qfc_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ  237 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            778888888888888888888765    11222     257778888888999999999999988876421      155


Q ss_pred             hHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 008276          504 YYVLLSNIYAKAGRWGDV-KRVRKFMN  529 (571)
Q Consensus       504 ~~~~l~~~~~~~g~~~~A-~~~~~~m~  529 (571)
                      +|..++.+|.+.|++++| ...+++..
T Consensus       238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          238 LYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            788889999999999999 77676654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.83  E-value=9.4e-08  Score=80.00  Aligned_cols=126  Identities=6%  Similarity=-0.033  Sum_probs=100.2

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 008276          402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACC  479 (571)
Q Consensus       402 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~  479 (571)
                      .+..+...+...|++++|...|++..+.  .+.+...+..+..++...|++++|.+.+++. ...| +...|..+...+.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            4566667777788888888888887764  2345677778888888888888888888876 3334 6778888888999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH--HHhcCCHHHHHHHHHHHH
Q 008276          480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNI--YAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       480 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~  529 (571)
                      ..|++++|...++++.+..|.+...+..+..+  +...|++++|...++...
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            99999999999999999999998888555554  788899999999988765

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.82  E-value=2.1e-07  Score=85.88  Aligned_cols=161  Identities=9%  Similarity=-0.041  Sum_probs=102.7

Q ss_pred             CHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHH-HHHH
Q 008276          298 NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--QDVVSWTS-MISA  374 (571)
Q Consensus       298 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~-li~~  374 (571)
                      +...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...++.+..  |+...... ....
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~  194 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE  194 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence            34445555556666777777777777776664 34556666777777777888888877777764  44332222 2223


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 008276          375 YGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVE  453 (571)
Q Consensus       375 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  453 (571)
                      +...++.++|+..+++..+.  .| +...+..+...+...|++++|...|.++.+...-..+...+..++..|...|+.+
T Consensus       195 l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~  272 (287)
T 3qou_A          195 LLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD  272 (287)
T ss_dssp             HHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred             HHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence            55666677777777777763  34 4556777777777777777777777777765222222556667777777777776


Q ss_pred             HHHHHHHh
Q 008276          454 EAYDLIKQ  461 (571)
Q Consensus       454 ~A~~~~~~  461 (571)
                      +|...+++
T Consensus       273 ~a~~~~r~  280 (287)
T 3qou_A          273 ALASXYRR  280 (287)
T ss_dssp             HHHHHHHH
T ss_pred             cHHHHHHH
Confidence            66666554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.77  E-value=1.9e-07  Score=73.66  Aligned_cols=115  Identities=22%  Similarity=0.248  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 008276          400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAA  477 (571)
Q Consensus       400 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~  477 (571)
                      ...+..+...+...|++++|...++++.+.  .+.+...+..+...+...|++++|...++++ ...| +...+..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence            346667777777888888888888887764  2345667777888888888888888888776 2233 67778888888


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 008276          478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG  516 (571)
Q Consensus       478 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  516 (571)
                      +...|++++|...++++.+..|.++..+..++.++...|
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            899999999999999999999999988888888776654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.77  E-value=3.4e-08  Score=83.96  Aligned_cols=126  Identities=8%  Similarity=0.043  Sum_probs=72.5

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCH--
Q 008276          376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL-LGRAGKV--  452 (571)
Q Consensus       376 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--  452 (571)
                      ...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+++.+..  +.+...+..+..+ +...|++  
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence            34566666666666666531 2244566666666666677777777776666531  2344555556666 5566666  


Q ss_pred             HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 008276          453 EEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY  504 (571)
Q Consensus       453 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  504 (571)
                      ++|...++++ ...| +...+..+...+...|++++|+..++++++..|++...
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  151 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR  151 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence            6666666655 3333 45556666666666666666666666666666665443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.76  E-value=4.8e-07  Score=79.33  Aligned_cols=131  Identities=9%  Similarity=-0.035  Sum_probs=100.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCH
Q 008276          337 ENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLL  416 (571)
Q Consensus       337 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~  416 (571)
                      +..+...+...|++++|...|++...++...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~   87 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY   87 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence            44566777888888888888888887888888888888888888888888888888742 23556788888888888888


Q ss_pred             HHHHHHHHHHHHhcCCCC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 008276          417 EEGRYYFKIMTEQYKLVP--------------RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNE  468 (571)
Q Consensus       417 ~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~  468 (571)
                      ++|...|++..+...-.+              ....+..+..++...|++++|.+.|+++ ...|+.
T Consensus        88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            888888888877422111              1267778888888888888888888877 555643

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.76  E-value=1.3e-07  Score=75.26  Aligned_cols=117  Identities=11%  Similarity=0.058  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 008276          400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAA  477 (571)
Q Consensus       400 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~  477 (571)
                      ...+..+...+...|++++|...++++...  .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   89 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence            346666777777888888888888887764  2345677778888888888888888888876 3334 57788888889


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCH
Q 008276          478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRW  518 (571)
Q Consensus       478 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  518 (571)
                      +...|++++|...++++.+..|.++..+..++.++...|++
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999888875

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.75  E-value=8.4e-08  Score=90.80  Aligned_cols=94  Identities=13%  Similarity=0.069  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 008276          436 IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA  513 (571)
Q Consensus       436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  513 (571)
                      ...|..+..+|.+.|++++|+..++++ ...| +...|..+..++...|++++|+..|+++++++|++..++..++.++.
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  275 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  275 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            467788888899999999999998887 4445 67888999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHH-HHHHHHHH
Q 008276          514 KAGRWGDV-KRVRKFMN  529 (571)
Q Consensus       514 ~~g~~~~A-~~~~~~m~  529 (571)
                      +.|++++| ...++.|.
T Consensus       276 ~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          276 RIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999 44666664

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.75  E-value=7.5e-08  Score=78.36  Aligned_cols=103  Identities=14%  Similarity=-0.029  Sum_probs=52.0

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 008276          402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACC  479 (571)
Q Consensus       402 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~  479 (571)
                      .+..+...+...|++++|...|+.+...  .+.+...|..+..+|...|++++|+..|++. ...| ++..+..+..++.
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   97 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            3444444555555555555555555542  1233444555555555555555555555554 2223 3344444555555


Q ss_pred             hcCCHHHHHHHHHHHHhhCCCCchhHH
Q 008276          480 LYSNMDIGILAADHIFHLAPNQSGYYV  506 (571)
Q Consensus       480 ~~g~~~~A~~~~~~~~~~~p~~~~~~~  506 (571)
                      ..|++++|+..|++++++.|+++....
T Consensus        98 ~~g~~~~A~~~~~~al~~~p~~~~~~~  124 (142)
T 2xcb_A           98 QLGDLDGAESGFYSARALAAAQPAHEA  124 (142)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence            555555555555555555555444433

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.75  E-value=1.3e-07  Score=75.67  Aligned_cols=116  Identities=7%  Similarity=-0.030  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 008276          400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAA  477 (571)
Q Consensus       400 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~  477 (571)
                      ...+..+...+...|++++|...|++..+.  .+.+...+..+..++...|++++|.+.++++ ...| +...+..+...
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   93 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA   93 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            335556666666666666666666666542  2334556666666666677777777666665 2233 56677777788


Q ss_pred             HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 008276          478 CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR  517 (571)
Q Consensus       478 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  517 (571)
                      +...|++++|+..++++.+.+|.+...+..++.++...|+
T Consensus        94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            8888888888888888888888888888888888777664

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.74  E-value=1.3e-07  Score=77.28  Aligned_cols=105  Identities=10%  Similarity=0.012  Sum_probs=89.3

Q ss_pred             CCCCH-HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 008276          396 LCPDS-IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWG  472 (571)
Q Consensus       396 ~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~  472 (571)
                      +.|+. ..+..+...+...|++++|...|+++.+.  .+.+...|..+..+|...|++++|++.|+++ .+.| ++..|.
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~  108 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF  108 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence            44543 37778888899999999999999999874  3456788999999999999999999999988 5555 577888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 008276          473 SLVAACCLYSNMDIGILAADHIFHLAPNQS  502 (571)
Q Consensus       473 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  502 (571)
                      .+..++...|++++|+..|++++++.|+++
T Consensus       109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999999999999999998754

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.73  E-value=2.2e-06  Score=75.02  Aligned_cols=158  Identities=8%  Similarity=-0.015  Sum_probs=124.1

Q ss_pred             ChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC----chHHHHHHHHHHHHcCCCCChhHHH
Q 008276          263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS----ALLLGRKIHRYVERKKLQPNLRLEN  338 (571)
Q Consensus       263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~  338 (571)
                      ++.++..+...|...+++++|+.+|++..+.|   +...+..+...|.. +    ++++|...|+...+.+   +...+.
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~   89 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI   89 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            56778888889999999999999999998865   55667777777777 6    8999999999998765   456667


Q ss_pred             HHHHHHHh----cCCHHHHHHHHhhCCCC-C----hhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 008276          339 ALVDMYAK----CGSLTEARTVFDQMRCQ-D----VVSWTSMISAYGM----SGQGYDAVALFSKMLMSGLCPDSIAFVS  405 (571)
Q Consensus       339 ~l~~~~~~----~~~~~~a~~~~~~~~~~-~----~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~  405 (571)
                      .|...|..    .+++++|..+|+...+. +    +..+..|...|..    .+++++|+.+|++..+.  ..+...+..
T Consensus        90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~  167 (212)
T 3rjv_A           90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW  167 (212)
T ss_dssp             HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred             HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence            77777776    78899999999888763 2    5778888888888    78899999999998885  234445666


Q ss_pred             HHHHhhcC------CCHHHHHHHHHHHHHh
Q 008276          406 VLSACSHA------GLLEEGRYYFKIMTEQ  429 (571)
Q Consensus       406 l~~~~~~~------~~~~~a~~~~~~~~~~  429 (571)
                      |...|...      .++++|..+|+...+.
T Consensus       168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             HHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence            66666542      2889999999888775

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.73  E-value=4.7e-08  Score=80.10  Aligned_cols=118  Identities=12%  Similarity=-0.002  Sum_probs=93.3

Q ss_pred             HHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 008276          387 LFSKMLMSGLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PM  464 (571)
Q Consensus       387 ~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~  464 (571)
                      .|+++.+  +.|+ ...+..+...+...|++++|...|+.+...  .+.+...|..+..++...|++++|++.|+++ ..
T Consensus         9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   84 (148)
T 2vgx_A            9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM   84 (148)
T ss_dssp             SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            3445444  4453 346777788888999999999999998874  3456778888999999999999999999887 44


Q ss_pred             CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 008276          465 EP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL  508 (571)
Q Consensus       465 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  508 (571)
                      .| +...|..+..++...|++++|+..|++++++.|+++......
T Consensus        85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  129 (148)
T 2vgx_A           85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELS  129 (148)
T ss_dssp             STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence            45 567888889999999999999999999999999887664433

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.73  E-value=8.6e-08  Score=76.11  Aligned_cols=91  Identities=11%  Similarity=0.034  Sum_probs=45.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 008276          439 FACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG  516 (571)
Q Consensus       439 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  516 (571)
                      +..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.++...|
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~   86 (126)
T 3upv_A            7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK   86 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence            334444444455555555544444 2222 34444455555555555555555555555555555555555555555555


Q ss_pred             CHHHHHHHHHHHH
Q 008276          517 RWGDVKRVRKFMN  529 (571)
Q Consensus       517 ~~~~A~~~~~~m~  529 (571)
                      ++++|...+++..
T Consensus        87 ~~~~A~~~~~~al   99 (126)
T 3upv_A           87 EYASALETLDAAR   99 (126)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            5555555555444

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.70  E-value=2.6e-06  Score=84.74  Aligned_cols=337  Identities=8%  Similarity=-0.033  Sum_probs=189.6

Q ss_pred             CCHHHHHHHHccCCC--CCchhHHHHHHHHHhCCC-chHHHHHHHHHHHC-CCCC-CHHHHHHHHHHhcCCC--CccHHH
Q 008276          179 GCLKEARRVLNDMPS--KDVVTWNSMVAGYAQNGR-FDEALDVCREMESL-RIKP-DADTMASLLPSVTNTS--PENVLS  251 (571)
Q Consensus       179 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~-g~~p-~~~t~~~ll~~~~~~~--~~~~~~  251 (571)
                      |+++.+..+|++...  |++..|...+....+.++ .+....+|+..... |..| +...|...+.-+....  ...++.
T Consensus        28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~  107 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK  107 (493)
T ss_dssp             TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence            566666666666554  566666666655555442 34556667766653 4333 5566666665543321  223677


Q ss_pred             HHHHHhhCCCCChhhHHHHHHHHHH---c--------------CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC--
Q 008276          252 VKEMFLKLDNKNLVSWNVMIAVYAN---N--------------SMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL--  312 (571)
Q Consensus       252 a~~~~~~~~~~~~~~~~~l~~~~~~---~--------------g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~--  312 (571)
                      ++.+|++....-...+..+-..|..   .              +.+..|..+++++...-...+...|...+.--...  
T Consensus       108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~  187 (493)
T 2uy1_A          108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM  187 (493)
T ss_dssp             HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence            8888877753111111222222211   1              12223344444433210001223444443332111  


Q ss_pred             C--c---hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CChh-HHHHHHHHHHhcCChHHHH
Q 008276          313 S--A---LLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC-QDVV-SWTSMISAYGMSGQGYDAV  385 (571)
Q Consensus       313 ~--~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~-~~~~li~~~~~~~~~~~a~  385 (571)
                      +  +   .+.+..+|+.++... +.+...|...+..+.+.|+.+.|..++++... |... .|.    .|....+.++. 
T Consensus       188 ~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~-  261 (493)
T 2uy1_A          188 KLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV-  261 (493)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH-
T ss_pred             cCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH-
Confidence            1  1   344667888877754 55577777777878888899999888886543 3322 222    22222222222 


Q ss_pred             HHHHHHHHC---------CCCC---CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CH
Q 008276          386 ALFSKMLMS---------GLCP---DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG-KV  452 (571)
Q Consensus       386 ~~~~~m~~~---------g~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~  452 (571)
                        ++.+.+.         +..+   ....|...+....+.++.+.|..+|+++ +. . ..+...|...+..-...+ +.
T Consensus       262 --~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~  336 (493)
T 2uy1_A          262 --YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSR  336 (493)
T ss_dssp             --HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCS
T ss_pred             --HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCCh
Confidence              2222221         0011   1235666666666678899999999988 43 2 234455544443333334 69


Q ss_pred             HHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          453 EEAYDLIKQM--PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       453 ~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      +.|..+|+..  ....++..|...+.-....|+.+.|..+|+++    +.+...|...+..-...|+.+.+..+++++.+
T Consensus       337 ~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          337 ATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999877  22224556677777777899999999999987    34567788888877888999999998888864

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.69  E-value=3.6e-08  Score=90.75  Aligned_cols=189  Identities=11%  Similarity=-0.014  Sum_probs=125.2

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 008276          333 NLRLENALVDMYAKCGSLTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLS  408 (571)
Q Consensus       333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~  408 (571)
                      +...+..+...+...|++++|...|+...+  | +...|..+...|.+.|++++|+..+++..+.  .| +...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            344555666777777888888777776653  3 5667788888888888888888888888773  44 4557778888


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008276          409 ACSHAGLLEEGRYYFKIMTEQYKLVP---RIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMD  485 (571)
Q Consensus       409 ~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  485 (571)
                      ++...|++++|...|++..+...-.+   ....+..+  ...+...+..    .......++......+ ..+ ..|+++
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l-~~l-~~~~~~  152 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYL-TRL-IAAERE  152 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHH-HHH-HHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHH-HHH-HHHHHH
Confidence            88888899999888888765421111   11112111  1112212221    1112223333333333 222 368999


Q ss_pred             HHHHHHHHHHhhCCCCchhHHHHHHHHHhc-CCHHHHHHHHHHHHhC
Q 008276          486 IGILAADHIFHLAPNQSGYYVLLSNIYAKA-GRWGDVKRVRKFMNSK  531 (571)
Q Consensus       486 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~  531 (571)
                      +|++.++++.+.+|++......+...+.+. +++++|.++|.+..+.
T Consensus       153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            999999999999998887777887777776 7899999999988753

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.68  E-value=8.9e-08  Score=75.31  Aligned_cols=94  Identities=15%  Similarity=0.041  Sum_probs=83.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 008276          439 FACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG  516 (571)
Q Consensus       439 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  516 (571)
                      +..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...|
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            456777888999999999999988 4455 78888889999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhCC
Q 008276          517 RWGDVKRVRKFMNSKG  532 (571)
Q Consensus       517 ~~~~A~~~~~~m~~~~  532 (571)
                      ++++|+..+++..+..
T Consensus       100 ~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A          100 NANAALASLRAWLLSQ  115 (121)
T ss_dssp             HHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            9999999999987653

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.67  E-value=1.2e-06  Score=81.19  Aligned_cols=164  Identities=10%  Similarity=-0.072  Sum_probs=120.3

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-Ch------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--H
Q 008276          335 RLENALVDMYAKCGSLTEARTVFDQMRC--Q-DV------VSWTSMISAYGMSGQGYDAVALFSKMLMSGL---CPD--S  400 (571)
Q Consensus       335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~  400 (571)
                      ..+...+..+...|++++|.+.++...+  + ..      ..+..+...+...|++++|+..+++..+...   .+.  .
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            3444566778888999999888875432  1 11      2244466667888999999999999886321   112  3


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHhC-CC------CC-C
Q 008276          401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR-----IEHFACLVDLLGRAGKVEEAYDLIKQM-PM------EP-N  467 (571)
Q Consensus       401 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p-~  467 (571)
                      .+|+.+...|...|++++|...++++.+.....|+     ..++..+...|...|++++|...+++. .+      .. -
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~  235 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            47888899999999999999999998732111222     257888999999999999999999876 11      11 2


Q ss_pred             HHHHHHHHHHHHhcCCHHHH-HHHHHHHHhhC
Q 008276          468 ERIWGSLVAACCLYSNMDIG-ILAADHIFHLA  498 (571)
Q Consensus       468 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~  498 (571)
                      ..+|..+...+...|++++| ...++++..+.
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            56788889999999999999 78888887643

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.67  E-value=4.3e-06  Score=77.42  Aligned_cols=204  Identities=9%  Similarity=-0.093  Sum_probs=138.2

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhH---HHHHHHHHHhcCCHHHHHHHHhhCCC
Q 008276          286 LYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRL---ENALVDMYAKCGSLTEARTVFDQMRC  362 (571)
Q Consensus       286 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~  362 (571)
                      .+..+......|+..+...+...+.-.-+         .+.......+...   +...+..+...|++++|..+++...+
T Consensus        33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~  103 (293)
T 3u3w_A           33 EVSRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK  103 (293)
T ss_dssp             HHHHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence            34444433346777776666665533211         1111111222222   22346678889999999999988654


Q ss_pred             --C-Ch------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276          363 --Q-DV------VSWTSMISAYGMSGQGYDAVALFSKMLMSGLC-PD----SIAFVSVLSACSHAGLLEEGRYYFKIMTE  428 (571)
Q Consensus       363 --~-~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  428 (571)
                        + +.      ..+..+...+...+++++|+..|+++.+.... ++    ..+++.+...|...|++++|..+|+++.+
T Consensus       104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  183 (293)
T 3u3w_A          104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK  183 (293)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence              1 11      12344666777788999999999999884222 22    23688899999999999999999999875


Q ss_pred             hc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHHH
Q 008276          429 QY----KLVPR-IEHFACLVDLLGRAGKVEEAYDLIKQM-------PMEPN-ERIWGSLVAACCLYSN-MDIGILAADHI  494 (571)
Q Consensus       429 ~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~-~~~A~~~~~~~  494 (571)
                      ..    +..+. ..++..+...|.+.|++++|.+.+++.       +..+. ..+|..+..++...|+ +++|+..++++
T Consensus       184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A  263 (293)
T 3u3w_A          184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            21    11111 247888999999999999999998876       22222 6688889999999995 69999999998


Q ss_pred             HhhC
Q 008276          495 FHLA  498 (571)
Q Consensus       495 ~~~~  498 (571)
                      +.+.
T Consensus       264 l~i~  267 (293)
T 3u3w_A          264 SFFF  267 (293)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8743

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.65  E-value=9e-08  Score=77.89  Aligned_cols=96  Identities=11%  Similarity=0.036  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 008276          436 IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA  513 (571)
Q Consensus       436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  513 (571)
                      ...+..+...+.+.|++++|...|+++ ...| +...|..+..++...|++++|+..|+++++++|+++.++..++.+|.
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   97 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            355667788888999999999999887 4455 67788888888999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhC
Q 008276          514 KAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       514 ~~g~~~~A~~~~~~m~~~  531 (571)
                      ..|++++|...+++..+.
T Consensus        98 ~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           98 QLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHh
Confidence            999999999999887654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.64  E-value=1.9e-07  Score=78.14  Aligned_cols=110  Identities=11%  Similarity=-0.020  Sum_probs=93.7

Q ss_pred             CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 008276          399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVA  476 (571)
Q Consensus       399 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~  476 (571)
                      +...+..+...+...|++++|...|++..+.  .+.+...|..+..+|.+.|++++|+..|++. ...| +...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            4457888888999999999999999999875  2446788899999999999999999999987 4455 5788999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 008276          477 ACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSN  510 (571)
Q Consensus       477 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  510 (571)
                      ++...|++++|+..|+++++++|++...|.....
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  121 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL  121 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            9999999999999999999999999886655543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.64  E-value=3.5e-07  Score=73.72  Aligned_cols=94  Identities=7%  Similarity=-0.028  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 008276          436 IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA  513 (571)
Q Consensus       436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  513 (571)
                      ...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|+..++++++.+|.++.++..++.+|.
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   88 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            334444444444444444444444443 2222 33444444444445555555555555555555555555555555555


Q ss_pred             hcCCHHHHHHHHHHHH
Q 008276          514 KAGRWGDVKRVRKFMN  529 (571)
Q Consensus       514 ~~g~~~~A~~~~~~m~  529 (571)
                      ..|++++|...+++..
T Consensus        89 ~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           89 EMESYDEAIANLQRAY  104 (137)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHH
Confidence            5555555555554443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.63  E-value=1.7e-07  Score=84.19  Aligned_cols=124  Identities=7%  Similarity=-0.062  Sum_probs=73.2

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhc
Q 008276          406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNE----RIWGSLVAACCLY  481 (571)
Q Consensus       406 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~  481 (571)
                      +...+...|++++|.++|+.+...   .|+......+...+.+.+++++|+..|++....|+.    ..+..+..++...
T Consensus       108 yA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L  184 (282)
T 4f3v_A          108 FAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL  184 (282)
T ss_dssp             HHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence            445556666777777776666532   233324445555666677777777777655222222    2455566666667


Q ss_pred             CCHHHHHHHHHHHHhhC--CC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          482 SNMDIGILAADHIFHLA--PN-QSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       482 g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      |++++|+..|+++....  |. .+......+.++.+.|+.++|..+|+++....
T Consensus       185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            77777777777665432  33 33456666666777777777777777666544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.63  E-value=2.9e-07  Score=79.75  Aligned_cols=96  Identities=14%  Similarity=-0.001  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 008276          437 EHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK  514 (571)
Q Consensus       437 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  514 (571)
                      ..+..+..+|...|++++|+..+++. ...| +...+..+..++...|++++|+..|++++++.|.+..++..+..++..
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  168 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  168 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            56777888888889999998888877 3344 677888899999999999999999999999999999999999999999


Q ss_pred             cCCHHHHH-HHHHHHHhCC
Q 008276          515 AGRWGDVK-RVRKFMNSKG  532 (571)
Q Consensus       515 ~g~~~~A~-~~~~~m~~~~  532 (571)
                      .|+.+++. ..++.|...+
T Consensus       169 ~~~~~~~~~~~~~~~f~~~  187 (198)
T 2fbn_A          169 LKEARKKDKLTFGGMFDKG  187 (198)
T ss_dssp             HHHHHC-------------
T ss_pred             HHHHHHHHHHHHHHHhccc
Confidence            98888877 5566665443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.62  E-value=2.2e-07  Score=71.59  Aligned_cols=98  Identities=11%  Similarity=0.117  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHH
Q 008276          436 IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPN--QSGYYVLLSNI  511 (571)
Q Consensus       436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~  511 (571)
                      ...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|+..++++.+..|.  +...+..++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA   85 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence            345566777777888888888888776 3233 5677788888888899999999999999999888  88899999999


Q ss_pred             HHhc-CCHHHHHHHHHHHHhCCC
Q 008276          512 YAKA-GRWGDVKRVRKFMNSKGI  533 (571)
Q Consensus       512 ~~~~-g~~~~A~~~~~~m~~~~~  533 (571)
                      +... |++++|.+.+++..+...
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             HHHHhCCHHHHHHHHHHHhhccc
Confidence            9999 999999999988876653

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.61  E-value=3.9e-07  Score=72.23  Aligned_cols=111  Identities=8%  Similarity=-0.082  Sum_probs=85.2

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 008276          401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAAC  478 (571)
Q Consensus       401 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~  478 (571)
                      ..+..+...+...|++++|...|++..+.  .+.+...|..+..++.+.|++++|+..+++. ...| +...|..+..++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            35666667777888888888888887764  2445677788888888888888888888876 4445 577888888888


Q ss_pred             HhcCCHHHHHHHHHHHHhhC------CCCchhHHHHHHHHH
Q 008276          479 CLYSNMDIGILAADHIFHLA------PNQSGYYVLLSNIYA  513 (571)
Q Consensus       479 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~  513 (571)
                      ...|++++|+..++++++++      |.+..++..+..+..
T Consensus        83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence            89999999999999999988      877777777766543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.60  E-value=5.6e-07  Score=71.87  Aligned_cols=99  Identities=8%  Similarity=0.049  Sum_probs=90.0

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 008276          434 PRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI  511 (571)
Q Consensus       434 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  511 (571)
                      .+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|+..++++.+..|.+..++..++.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   93 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA   93 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            34577888999999999999999999987 5555 788899999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhCC
Q 008276          512 YAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       512 ~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      +...|++++|...+++..+..
T Consensus        94 ~~~~~~~~~A~~~~~~~~~~~  114 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALDLD  114 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhhHHHHHHHHHHHHHhC
Confidence            999999999999999987653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.60  E-value=2.9e-07  Score=78.11  Aligned_cols=122  Identities=11%  Similarity=0.023  Sum_probs=97.4

Q ss_pred             hhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--
Q 008276          410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAA-CCLYSNM--  484 (571)
Q Consensus       410 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~~--  484 (571)
                      +...|++++|...++...+.  .+.+...+..+...|...|++++|...|+++ ...| +...+..+... +...|++  
T Consensus        20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence            45678888899999888774  2456678888999999999999999999887 3334 66777778888 7788888  


Q ss_pred             HHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008276          485 DIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI  533 (571)
Q Consensus       485 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  533 (571)
                      ++|+..++++++.+|.++.++..++.+|...|++++|...+++..+...
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  146 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS  146 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence            9999999999999999999999999999999999999999998887653

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.60  E-value=1.3e-06  Score=75.83  Aligned_cols=128  Identities=9%  Similarity=0.002  Sum_probs=61.3

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhcC---CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC-C----H
Q 008276          402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYK---LVP-RIEHFACLVDLLGRAGKVEEAYDLIKQM-P---MEP-N----E  468 (571)
Q Consensus       402 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p-~----~  468 (571)
                      .+..+...+...|++++|...+++..+...   ..+ ....+..+...+...|++++|.+.+++. .   ..+ +    .
T Consensus        28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  107 (203)
T 3gw4_A           28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS  107 (203)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence            444444455555555555555554433110   111 1233444555555555555555555443 0   011 1    2


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCc----hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          469 RIWGSLVAACCLYSNMDIGILAADHIFHLA--PNQS----GYYVLLSNIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       469 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~  529 (571)
                      ..+..+...+...|++++|...++++++..  ..++    .++..++.++...|++++|.+.+++..
T Consensus       108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  174 (203)
T 3gw4_A          108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR  174 (203)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            234445555555666666666666655432  1111    124556666666666666666665554

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.59  E-value=2.5e-07  Score=73.47  Aligned_cols=95  Identities=9%  Similarity=-0.013  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-------hHHH
Q 008276          437 EHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG-------YYVL  507 (571)
Q Consensus       437 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~  507 (571)
                      ..+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++++|.+..       +|..
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            45667788888889999999888877 4455 6778888889999999999999999999998876543       6777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhC
Q 008276          508 LSNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       508 l~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                      ++.++...|++++|++.+++..+.
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhh
Confidence            888888999999999999887653

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.58  E-value=1.1e-06  Score=68.21  Aligned_cols=108  Identities=9%  Similarity=0.050  Sum_probs=62.1

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 008276          402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACC  479 (571)
Q Consensus       402 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~  479 (571)
                      .+..+...+...|++++|...++.....  .+.+...+..+...+...|++++|...+++. ...| +...+..+..++.
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            4444555555566666666666665543  1234455555556666666666666666554 2223 4555566666666


Q ss_pred             hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 008276          480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNI  511 (571)
Q Consensus       480 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  511 (571)
                      ..|++++|...++++.+.+|.++..+..++.+
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            66666666666666666666666665555443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.58  E-value=1.1e-06  Score=78.90  Aligned_cols=137  Identities=9%  Similarity=-0.089  Sum_probs=97.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHH
Q 008276          368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR--IEHFACLVDL  445 (571)
Q Consensus       368 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~  445 (571)
                      +-.+...+...|++++|.++|+.+...  .|+......+...+.+.+++++|+..|+..... . .|.  ...+..+..+
T Consensus       105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a  180 (282)
T 4f3v_A          105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA  180 (282)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence            344566677788888888888777663  354445555556777888888888888755431 1 111  2356778888


Q ss_pred             HHhcCCHHHHHHHHHhC--C-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 008276          446 LGRAGKVEEAYDLIKQM--P-MEPN--ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS  509 (571)
Q Consensus       446 ~~~~g~~~~A~~~~~~~--~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  509 (571)
                      +...|++++|++.|++.  + ..|.  ...+.....++.+.|+.++|...|+++...+|. ..++..|.
T Consensus       181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence            88899999999988887  2 1143  335666777788899999999999999999997 66666653

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.57  E-value=6.5e-07  Score=74.79  Aligned_cols=97  Identities=13%  Similarity=0.038  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 008276          436 IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA  513 (571)
Q Consensus       436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  513 (571)
                      ...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|++..+|..++.+|.
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            455666677777777777777777766 3334 56666777777777777777777777777777777777777777777


Q ss_pred             hcCCHHHHHHHHHHHHhCC
Q 008276          514 KAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       514 ~~g~~~~A~~~~~~m~~~~  532 (571)
                      ..|++++|...+++..+..
T Consensus        91 ~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           91 DMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhC
Confidence            7777777777777766543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.55  E-value=1.1e-06  Score=68.34  Aligned_cols=98  Identities=12%  Similarity=0.135  Sum_probs=88.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 008276          435 RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY  512 (571)
Q Consensus       435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  512 (571)
                      ....+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|.++..+..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            3456778889999999999999999987 3344 7788889999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhCC
Q 008276          513 AKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       513 ~~~g~~~~A~~~~~~m~~~~  532 (571)
                      ...|++++|...+++..+.+
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~  102 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHE  102 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHhhHHHHHHHHHHHHHcC
Confidence            99999999999999988664

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.54  E-value=6.5e-05  Score=69.82  Aligned_cols=231  Identities=9%  Similarity=0.010  Sum_probs=145.1

Q ss_pred             HHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-C-C
Q 008276          273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS-ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKC-G-S  349 (571)
Q Consensus       273 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~  349 (571)
                      ...+.+..++|++++++++..+ +-+...++.--..+...+ .++++..+++.+...+ +-+..+|+.-..++... + +
T Consensus        63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~  140 (349)
T 3q7a_A           63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD  140 (349)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred             HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence            3344456678999999998754 334455666555566667 5899999999998876 45666777665556555 5 7


Q ss_pred             HHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCC---
Q 008276          350 LTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGY--------DAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL---  415 (571)
Q Consensus       350 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~---  415 (571)
                      ++++.++++.+.+   .|...|+.-.-.+.+.|.++        ++++.++++.+.. .-|...|+.....+.+.+.   
T Consensus       141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~  219 (349)
T 3q7a_A          141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET  219 (349)
T ss_dssp             CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence            8888888888876   35556666555555555555        8888888888853 2266677777777766665   


Q ss_pred             ----HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHhC-CC------
Q 008276          416 ----LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV--------------------EEAYDLIKQM-PM------  464 (571)
Q Consensus       416 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~------  464 (571)
                          ++++++.++++...  .+-|...|+.+-..+.+.|+.                    ....+...++ +.      
T Consensus       220 ~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (349)
T 3q7a_A          220 SSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT  297 (349)
T ss_dssp             CHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred             chHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence                67788888777763  345566676666666666543                    2233333333 11      


Q ss_pred             -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhCCCCchhHHHH
Q 008276          465 -EPNERIWGSLVAACCLYSNMDIGILAADHIF-HLAPNQSGYYVLL  508 (571)
Q Consensus       465 -~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l  508 (571)
                       .+.+..+..++..|...|+.++|.++++.+. +.+|-....|.-.
T Consensus       298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~  343 (349)
T 3q7a_A          298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFR  343 (349)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence             1345556666666666666666666666664 4455555444443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.54  E-value=1.3e-06  Score=71.24  Aligned_cols=110  Identities=9%  Similarity=-0.039  Sum_probs=70.5

Q ss_pred             CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 008276          399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR----IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWG  472 (571)
Q Consensus       399 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~  472 (571)
                      +...+..+...+...|++++|...|++..+.   .|+    ...+..+..+|...|++++|...+++. ...| +...|.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence            3446666666677777777777777776642   344    455666666677777777777766665 3333 455666


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 008276          473 SLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNI  511 (571)
Q Consensus       473 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  511 (571)
                      .+..++...|++++|...++++++.+|++..++..+..+
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI  142 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            666666677777777777777777777666666555544

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.54  E-value=8.8e-07  Score=76.84  Aligned_cols=153  Identities=12%  Similarity=-0.015  Sum_probs=97.4

Q ss_pred             hcCCHHHHHH---HHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHhhcCCCHH
Q 008276          346 KCGSLTEART---VFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLM----SGLCP-DSIAFVSVLSACSHAGLLE  417 (571)
Q Consensus       346 ~~~~~~~a~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p-~~~~~~~l~~~~~~~~~~~  417 (571)
                      ..|++++|.+   .+..-.......+..+...+...|++++|...+++..+    .+..| ...++..+...+...|+++
T Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   83 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD   83 (203)
T ss_dssp             ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            4566666666   44332223445666777777777777777777777655    12222 2336667777788888888


Q ss_pred             HHHHHHHHHHHhcCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCH
Q 008276          418 EGRYYFKIMTEQYKLVP-R----IEHFACLVDLLGRAGKVEEAYDLIKQM----PMEPN----ERIWGSLVAACCLYSNM  484 (571)
Q Consensus       418 ~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~  484 (571)
                      +|...+++..+.....+ +    ...+..+...+...|++++|...+++.    ...++    ..++..+...+...|++
T Consensus        84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  163 (203)
T 3gw4_A           84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL  163 (203)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence            88888877665311112 2    245677778888888888888887765    11112    23456677778888999


Q ss_pred             HHHHHHHHHHHhhC
Q 008276          485 DIGILAADHIFHLA  498 (571)
Q Consensus       485 ~~A~~~~~~~~~~~  498 (571)
                      ++|...++++.++.
T Consensus       164 ~~A~~~~~~al~~~  177 (203)
T 3gw4_A          164 LEAQQHWLRARDIF  177 (203)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99988888887654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.54  E-value=4.8e-07  Score=73.14  Aligned_cols=61  Identities=15%  Similarity=0.115  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhh-------CCCCchhH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          470 IWGSLVAACCLYSNMDIGILAADHIFHL-------APNQSGYY----VLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       470 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      .|..+..++.+.|++++|+..+++++++       +|++..+|    ...+.++...|++++|+..|++..+
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            7888888888888888888888888888       89888888    8999999999999999998888764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.52  E-value=1.3e-06  Score=68.57  Aligned_cols=97  Identities=21%  Similarity=0.281  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 008276          436 IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA  513 (571)
Q Consensus       436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  513 (571)
                      ...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|+..++++.+..|.++..+..++.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            467888999999999999999999987 3334 67888999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHhCC
Q 008276          514 KAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       514 ~~g~~~~A~~~~~~m~~~~  532 (571)
                      ..|++++|..+++++.+..
T Consensus        89 ~~~~~~~A~~~~~~~~~~~  107 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELD  107 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHC
T ss_pred             HhcCHHHHHHHHHHHHHhC
Confidence            9999999999999987654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.52  E-value=2e-06  Score=70.13  Aligned_cols=98  Identities=13%  Similarity=0.017  Sum_probs=69.0

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 008276          434 PRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN----ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL  508 (571)
Q Consensus       434 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  508 (571)
                      .+...+..+...+...|++++|.+.|++. ...|+    ...|..+...+...|++++|+..++++++..|.++..+..+
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  105 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR  105 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence            34566666777777777777777777766 55565    45666666677777777777777777777777777777777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhC
Q 008276          509 SNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       509 ~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                      +.+|...|++++|...+++..+.
T Consensus       106 a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          106 SQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHc
Confidence            77777777777777777776654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.51  E-value=2.2e-06  Score=71.40  Aligned_cols=128  Identities=10%  Similarity=-0.014  Sum_probs=95.4

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 008276          366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL  445 (571)
Q Consensus       366 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  445 (571)
                      ..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.  .+.+...+..+..+
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~   90 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence            346667777888888888888888888742 235667888888888889999999998888774  24456778888888


Q ss_pred             HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH--HHHHHhcCCHHHHHHHHHHHHh
Q 008276          446 LGRAGKVEEAYDLIKQM-PMEP-NERIWGSL--VAACCLYSNMDIGILAADHIFH  496 (571)
Q Consensus       446 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~  496 (571)
                      +...|++++|.+.++++ ...| +...+..+  +..+...|++++|+..+++...
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            88899999999888877 3334 44455333  3336678888888888887655

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.49  E-value=1e-06  Score=70.92  Aligned_cols=113  Identities=8%  Similarity=-0.086  Sum_probs=84.7

Q ss_pred             CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 008276          399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVA  476 (571)
Q Consensus       399 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~  476 (571)
                      +...+..+...+...|++++|...|+...+.  .+.+...+..+..++...|++++|...+++. ...| +...|..+..
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   85 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   85 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            5567777777888888888888888887764  2345677778888888888888888888876 3344 5678888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCC-----CchhHHHHHHHHH
Q 008276          477 ACCLYSNMDIGILAADHIFHLAPN-----QSGYYVLLSNIYA  513 (571)
Q Consensus       477 ~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~  513 (571)
                      ++...|++++|+..++++++..|+     +..+...+..+..
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~  127 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK  127 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence            888899999999999999888876     5555555544433

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.49  E-value=1e-05  Score=75.11  Aligned_cols=215  Identities=10%  Similarity=0.029  Sum_probs=156.0

Q ss_pred             CchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhhCCC---CChhHHHHHHHHHHhc-C-ChHHHHH
Q 008276          313 SALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG-SLTEARTVFDQMRC---QDVVSWTSMISAYGMS-G-QGYDAVA  386 (571)
Q Consensus       313 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~-~-~~~~a~~  386 (571)
                      +..++|.++++.++..+ +-+..+++.--.++...| .+++++.+++.+..   .+...|+.-...+.+. + +++++++
T Consensus        68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~  146 (349)
T 3q7a_A           68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE  146 (349)
T ss_dssp             CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence            34567888899998876 456667777777777778 59999999998875   4666788877777776 6 8999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHhhcCCCHH--------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-------
Q 008276          387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLE--------EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK-------  451 (571)
Q Consensus       387 ~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------  451 (571)
                      +++++.+.. +-|...|+.-.-.+...+.++        ++++.++++.+.  .+-|...|+....++.+.++       
T Consensus       147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~  223 (349)
T 3q7a_A          147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRS  223 (349)
T ss_dssp             HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHH
Confidence            999999853 226667766555555545555        899999999874  35577888888888888776       


Q ss_pred             HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhhC------CCCch
Q 008276          452 VEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNM--------------------DIGILAADHIFHLA------PNQSG  503 (571)
Q Consensus       452 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~------p~~~~  503 (571)
                      ++++++.++++ ...| |...|+.+-..+.+.|+.                    .....+...+....      +.++.
T Consensus       224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  303 (349)
T 3q7a_A          224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL  303 (349)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence            68888888776 4456 788888877777776654                    22333333332222      46777


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276          504 YYVLLSNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       504 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                      +...++.+|...|+.++|.++++.+.++
T Consensus       304 al~~l~d~~~~~~~~~~a~~~~~~l~~~  331 (349)
T 3q7a_A          304 ALEYLADSFIEQNRVDDAAKVFEKLSSE  331 (349)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence            8899999999999999999999998643

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.48  E-value=1.4e-06  Score=86.24  Aligned_cols=96  Identities=15%  Similarity=0.112  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 008276          436 IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA  513 (571)
Q Consensus       436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  513 (571)
                      ...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++++|+..|+++++++|++..++..++.++.
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  396 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK  396 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            467788889999999999999999887 4445 67888999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHH-HHHHHHhC
Q 008276          514 KAGRWGDVKR-VRKFMNSK  531 (571)
Q Consensus       514 ~~g~~~~A~~-~~~~m~~~  531 (571)
                      +.|++++|.+ .++.|..+
T Consensus       397 ~~~~~~~a~~~~~~~~f~k  415 (457)
T 1kt0_A          397 KAKEHNERDRRIYANMFKK  415 (457)
T ss_dssp             HHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            9999998874 56666544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.44  E-value=2.4e-06  Score=67.70  Aligned_cols=98  Identities=12%  Similarity=0.071  Sum_probs=88.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 008276          435 RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY  512 (571)
Q Consensus       435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  512 (571)
                      +...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|+..++++.+..|+++..+..++.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            4467788889999999999999999987 3344 6788889999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhCC
Q 008276          513 AKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       513 ~~~g~~~~A~~~~~~m~~~~  532 (571)
                      ...|++++|...+++..+..
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~  110 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELD  110 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS
T ss_pred             HHhCCHHHHHHHHHHHHhcC
Confidence            99999999999999987654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.42  E-value=1.5e-06  Score=69.11  Aligned_cols=105  Identities=10%  Similarity=-0.032  Sum_probs=64.3

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 008276          405 SVLSACSHAGLLEEGRYYFKIMTEQYKLVPR-IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN----ERIWGSLVAAC  478 (571)
Q Consensus       405 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~  478 (571)
                      .+...+...|++++|...|+.+.+.....+. ...+..+..++...|++++|...|+++ ...|+    ...+..+..++
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~   86 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ   86 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence            3455566777777777777777664221111 145556667777777777777777665 22332    44566666666


Q ss_pred             HhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 008276          479 CLYSNMDIGILAADHIFHLAPNQSGYYVLLS  509 (571)
Q Consensus       479 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  509 (571)
                      ...|++++|...++++++..|+++.......
T Consensus        87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~  117 (129)
T 2xev_A           87 YGEGKNTEAQQTLQQVATQYPGSDAARVAQE  117 (129)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            7777777777777777777776655544443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.41  E-value=7e-07  Score=88.74  Aligned_cols=120  Identities=7%  Similarity=-0.036  Sum_probs=97.2

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 008276          406 VLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSN  483 (571)
Q Consensus       406 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~  483 (571)
                      +...+...|++++|.+.++++.+.  .+.+...+..+..+|.+.|++++|++.+++. ...| +...|..+..++...|+
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            344566788999999999988874  2345678888999999999999999999887 4455 67788899999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCchhHHHHHHH--HHhcCCHHHHHHHHHH
Q 008276          484 MDIGILAADHIFHLAPNQSGYYVLLSNI--YAKAGRWGDVKRVRKF  527 (571)
Q Consensus       484 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~  527 (571)
                      +++|+..++++++..|++..++..++.+  +.+.|++++|++.+++
T Consensus        90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~  135 (477)
T 1wao_1           90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH  135 (477)
T ss_dssp             HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            9999999999999999999999998888  8888999999999873

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.41  E-value=2.7e-06  Score=80.40  Aligned_cols=128  Identities=9%  Similarity=-0.069  Sum_probs=99.0

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276          365 VVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD----------------SIAFVSVLSACSHAGLLEEGRYYFKIMTE  428 (571)
Q Consensus       365 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  428 (571)
                      ...|..+...+.+.|++++|+..|++..+.  .|+                ...|..+..++.+.|++++|...++++.+
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  224 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE  224 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445677777888888888888888888773  343                36788888888889999999999988887


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 008276          429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIG-ILAADHIFH  496 (571)
Q Consensus       429 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~  496 (571)
                      .  .+.+...+..+..+|...|++++|+..|+++ .+.| +...+..+...+...|+.++| ...|+++..
T Consensus       225 ~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          225 L--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             h--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4  2446678888888899999999999988887 4455 567788888888888888888 456666654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.38  E-value=4.2e-07  Score=70.97  Aligned_cols=90  Identities=11%  Similarity=0.067  Sum_probs=44.7

Q ss_pred             CCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 008276          413 AGLLEEGRYYFKIMTEQYK--LVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGI  488 (571)
Q Consensus       413 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~  488 (571)
                      .|++++|+..|++..+. +  .+.+...+..+..+|...|++++|++.|++. ...| +...+..+..++...|++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            35555666666655542 1  1122344555555555555555555555554 2223 3445555555555555555555


Q ss_pred             HHHHHHHhhCCCCch
Q 008276          489 LAADHIFHLAPNQSG  503 (571)
Q Consensus       489 ~~~~~~~~~~p~~~~  503 (571)
                      ..++++++..|+++.
T Consensus        82 ~~~~~al~~~p~~~~   96 (117)
T 3k9i_A           82 ELLLKIIAETSDDET   96 (117)
T ss_dssp             HHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHhCCCcHH
Confidence            555555555555543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.38  E-value=1.4e-06  Score=72.60  Aligned_cols=111  Identities=12%  Similarity=-0.037  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcC----------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 008276          400 SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK----------------LVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-  462 (571)
Q Consensus       400 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-  462 (571)
                      ...+......+.+.|++++|...|........                .+.+...|..+..+|.+.|++++|+..++++ 
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            34566777778888888888888888765300                1112245666667777777777777777665 


Q ss_pred             CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc-hhHHHHHH
Q 008276          463 PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS-GYYVLLSN  510 (571)
Q Consensus       463 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~  510 (571)
                      ...| +...|..+..++...|++++|+..|+++++++|+++ .+...+..
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~  140 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKI  140 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            3344 456666667777777777777777777777777666 33444433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.38  E-value=7.9e-05  Score=68.91  Aligned_cols=162  Identities=7%  Similarity=0.023  Sum_probs=70.5

Q ss_pred             hHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCC-HHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 008276          366 VSWTSMISAYGMSG--QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGL-LEEGRYYFKIMTEQYKLVPRIEHFACL  442 (571)
Q Consensus       366 ~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l  442 (571)
                      .+|+.-.-.+...+  .+++++.++.++.+.. +-|...|+.-...+...|. ++++++.++.+.+.  .+-|...|+..
T Consensus       109 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R  185 (331)
T 3dss_A          109 GTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYR  185 (331)
T ss_dssp             HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHH
T ss_pred             HHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence            33443333333333  2445555555555421 1133344433333334444 34555555554442  12333334333


Q ss_pred             HHHHHhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHH
Q 008276          443 VDLLGRA--------------GKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLY-----------SNMDIGILAADHIF  495 (571)
Q Consensus       443 ~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~  495 (571)
                      ..++.+.              +.++++++.+.+. ...| |...|+-+-..+.+.           +.++++++.+++++
T Consensus       186 ~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ell  265 (331)
T 3dss_A          186 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQ  265 (331)
T ss_dssp             HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHH
Confidence            3333332              2344555555444 2233 444454433333332           23556666666666


Q ss_pred             hhCCCCchhHHHHHHHHH---hcCCHHHHHHHHHHHHh
Q 008276          496 HLAPNQSGYYVLLSNIYA---KAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       496 ~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~  530 (571)
                      +..|++.-.+..++....   ..|..+++...+.++.+
T Consensus       266 e~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~  303 (331)
T 3dss_A          266 ELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA  303 (331)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred             hhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence            666665433333322211   24555566666665554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.37  E-value=1.9e-06  Score=68.41  Aligned_cols=109  Identities=4%  Similarity=-0.054  Sum_probs=69.4

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC----CCC----HHHHH
Q 008276          402 AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PM----EPN----ERIWG  472 (571)
Q Consensus       402 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~  472 (571)
                      .+..+...+...|++++|...|+...+.  .+.+...+..+...+...|++++|...++++ ..    .++    ..++.
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            4455555566666666666666666553  2334555666666666666666666666655 11    112    55667


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 008276          473 SLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA  513 (571)
Q Consensus       473 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  513 (571)
                      .+...+...|++++|...++++.+..| ++..+..+..+..
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~  123 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK  123 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence            777778888888888888888888877 5666666655543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.36  E-value=1.7e-06  Score=67.85  Aligned_cols=98  Identities=12%  Similarity=0.053  Sum_probs=66.6

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 008276          403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCL  480 (571)
Q Consensus       403 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~  480 (571)
                      +..+...+...|++++|...|+++.+.  .+.+...|..+..++...|++++|+..|++. ...| +...+..+..++..
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            344555667777888888887777763  2345667777777777788888888877776 4445 56677777777888


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCc
Q 008276          481 YSNMDIGILAADHIFHLAPNQS  502 (571)
Q Consensus       481 ~g~~~~A~~~~~~~~~~~p~~~  502 (571)
                      .|++++|+..++++++.+|.+.
T Consensus        98 ~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHHC------
T ss_pred             cCCHHHHHHHHHHHHHhCcCCC
Confidence            8888888888888888777653

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.36  E-value=9.5e-05  Score=68.36  Aligned_cols=241  Identities=8%  Similarity=0.008  Sum_probs=164.8

Q ss_pred             hhHHHHHH---HHHHcCCch-HHHHHHHHHHHCCCCCCH-HHHHHHHHHhccCCc----------hHHHHHHHHHHHHcC
Q 008276          265 VSWNVMIA---VYANNSMPA-EAVDLYLQMEVHGIEPNA-ISVASVLPACGDLSA----------LLLGRKIHRYVERKK  329 (571)
Q Consensus       265 ~~~~~l~~---~~~~~g~~~-~A~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~  329 (571)
                      ..|..+..   ...+.|.++ +|+++++.++..  .|+. ..|+.--..+...+.          ++++..+++.+...+
T Consensus        27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~  104 (331)
T 3dss_A           27 KLYQSATQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN  104 (331)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence            34444443   334566665 799999999875  4544 344433222222222          678888888888876


Q ss_pred             CCCChhHHHHHHHHHHhcC--CHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHH
Q 008276          330 LQPNLRLENALVDMYAKCG--SLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQ-GYDAVALFSKMLMSGLCPDSIAF  403 (571)
Q Consensus       330 ~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~  403 (571)
                       +-+..+|+.-.-++...+  .++++..+++.+.+   .|...|+.-.-.+...|. ++++++.+.++++..+ -|...|
T Consensus       105 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW  182 (331)
T 3dss_A          105 -PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSW  182 (331)
T ss_dssp             -TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHH
T ss_pred             -CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHH
Confidence             557778877666777777  48999999998875   467788887777788888 5899999999998532 255566


Q ss_pred             HHHHHHhhcC--------------CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHH
Q 008276          404 VSVLSACSHA--------------GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRA-----------GKVEEAYDL  458 (571)
Q Consensus       404 ~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~  458 (571)
                      +.....+...              +.++++++.++.....  .+-|...|+-+-..+.+.           +.++++++.
T Consensus       183 ~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~  260 (331)
T 3dss_A          183 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES  260 (331)
T ss_dssp             HHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence            6655554433              4578899999988874  355666776555555554           457888888


Q ss_pred             HHhC-CCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 008276          459 IKQM-PMEPNERIWGSLVAA-----CCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY  512 (571)
Q Consensus       459 ~~~~-~~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  512 (571)
                      ++++ ...|+. .|..+..+     ....|..++....+.++.+++|....-|.-+...+
T Consensus       261 ~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~  319 (331)
T 3dss_A          261 CKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF  319 (331)
T ss_dssp             HHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence            8887 556754 34332222     22467888999999999999998888887765543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.35  E-value=2.9e-06  Score=65.15  Aligned_cols=100  Identities=13%  Similarity=0.002  Sum_probs=74.3

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 008276          401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP---NERIWGSLVA  476 (571)
Q Consensus       401 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~  476 (571)
                      ..+..+...+...|++++|...++++.+.  .+.+...+..+..++...|++++|.+.+++. ...|   +...+..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            35556666777778888888888777764  2345566777788888888888888888776 3333   4677788888


Q ss_pred             HHHhc-CCHHHHHHHHHHHHhhCCCCc
Q 008276          477 ACCLY-SNMDIGILAADHIFHLAPNQS  502 (571)
Q Consensus       477 ~~~~~-g~~~~A~~~~~~~~~~~p~~~  502 (571)
                      .+... |++++|++.++++.+..|+++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            88888 888888888888888887654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.35  E-value=7.7e-06  Score=64.81  Aligned_cols=92  Identities=13%  Similarity=0.086  Sum_probs=62.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHHHHHH
Q 008276          441 CLVDLLGRAGKVEEAYDLIKQM-PMEPN-E---RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ---SGYYVLLSNIY  512 (571)
Q Consensus       441 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~  512 (571)
                      .+...+...|++++|.+.|+++ ...|+ .   ..+..+..++...|++++|+..++++++..|++   +.++..++.++
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~   86 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ   86 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence            3556666777777777777766 22332 2   356666667777777777777777777777776   56677777777


Q ss_pred             HhcCCHHHHHHHHHHHHhCC
Q 008276          513 AKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       513 ~~~g~~~~A~~~~~~m~~~~  532 (571)
                      ...|++++|...++++.+..
T Consensus        87 ~~~g~~~~A~~~~~~~~~~~  106 (129)
T 2xev_A           87 YGEGKNTEAQQTLQQVATQY  106 (129)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS
T ss_pred             HHcCCHHHHHHHHHHHHHHC
Confidence            77777777777777776543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.34  E-value=3.8e-06  Score=80.32  Aligned_cols=137  Identities=12%  Similarity=0.009  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008276          367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLL  446 (571)
Q Consensus       367 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  446 (571)
                      .+..+...+.+.|++++|+..|++.++.  .+...          .....       +...+  ..+.+...|..+..+|
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~~--~~~~~~~~~~nla~~~  283 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGAK--LQPVALSCVLNIGACK  283 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHGG--GHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHHH--HHHHHHHHHHHHHHHH
Confidence            4556666666777777777777666551  11100          00000       11100  0112346788899999


Q ss_pred             HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 008276          447 GRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRV  524 (571)
Q Consensus       447 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  524 (571)
                      .+.|++++|++.++++ ...| +...|..+..++...|++++|+..|+++++++|++..++..+..++...++.+++.+.
T Consensus       284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988 6666 6788899999999999999999999999999999999999999999999988887654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.33  E-value=3.2e-06  Score=67.06  Aligned_cols=97  Identities=10%  Similarity=0.054  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------chhHH
Q 008276          436 IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ-------SGYYV  506 (571)
Q Consensus       436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~  506 (571)
                      ...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|.+       ..++.
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            356778889999999999999999987 3334 67888899999999999999999999999988766       78899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          507 LLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       507 ~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      .++.+|...|++++|...+++..+..
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~  109 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEH  109 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            99999999999999999999988754

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.32  E-value=3.7e-06  Score=77.23  Aligned_cols=112  Identities=8%  Similarity=-0.109  Sum_probs=92.3

Q ss_pred             CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 008276          399 DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVA  476 (571)
Q Consensus       399 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~  476 (571)
                      +...+..+...+...|++++|...|+++.+.  .+.+...|..+..+|.+.|++++|...++++ ...| +...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            4567788888899999999999999999874  2346788889999999999999999999987 5566 6778888999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 008276          477 ACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY  512 (571)
Q Consensus       477 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  512 (571)
                      ++...|++++|+..|+++.+++|+++..+...+...
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~  116 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA  116 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHH
Confidence            999999999999999999999987755444343333

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.31  E-value=3.9e-06  Score=66.45  Aligned_cols=96  Identities=7%  Similarity=0.001  Sum_probs=50.1

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC----C----HHHHHH
Q 008276          403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP----N----ERIWGS  473 (571)
Q Consensus       403 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~----~~~~~~  473 (571)
                      +..+...+.+.|++++|+..|++..+.  .+.+...|..+..+|...|++++|++.+++. .+.|    +    ..+|..
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            334444444455555555555544432  1223344444555555555555555554443 1111    1    124555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 008276          474 LVAACCLYSNMDIGILAADHIFHLAPN  500 (571)
Q Consensus       474 l~~~~~~~g~~~~A~~~~~~~~~~~p~  500 (571)
                      +..++...|++++|+..|+++++..|+
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            666677778888888888887777663

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.31  E-value=1.9e-06  Score=71.70  Aligned_cols=61  Identities=3%  Similarity=0.029  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          470 IWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       470 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      .|..+..++.+.|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+
T Consensus        65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  125 (162)
T 3rkv_A           65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR  125 (162)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence            4445555555555555555555555555555555555555555555555555555555443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.30  E-value=1.5e-06  Score=82.13  Aligned_cols=147  Identities=12%  Similarity=-0.021  Sum_probs=77.2

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 008276          366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDL  445 (571)
Q Consensus       366 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  445 (571)
                      ..+..+...+.+.|++++|+..|++..+  ..|+...       +...++.+++...+.           ...|..+..+
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~  239 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence            3466666777777888888888888776  3454332       223333333332221           1367778888


Q ss_pred             HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH-HhcCCHHHHH
Q 008276          446 LGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY-AKAGRWGDVK  522 (571)
Q Consensus       446 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~  522 (571)
                      |.+.|++++|+..+++. ...| +...|..+..+|...|++++|+..|+++++++|++..++..+..+. ...+..+.+.
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~  319 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK  319 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888877 4445 6778888888888899999999999998888888888888887774 3456777788


Q ss_pred             HHHHHHHhCC
Q 008276          523 RVRKFMNSKG  532 (571)
Q Consensus       523 ~~~~~m~~~~  532 (571)
                      ..++.|....
T Consensus       320 ~~~~~~l~~~  329 (338)
T 2if4_A          320 EMYKGIFKGK  329 (338)
T ss_dssp             ----------
T ss_pred             HHHHHhhCCC
Confidence            8888776554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.30  E-value=4.3e-06  Score=69.19  Aligned_cols=128  Identities=13%  Similarity=0.013  Sum_probs=73.8

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC----CHHH
Q 008276          403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR----IEHFACLVDLLGRAGKVEEAYDLIKQM----PMEP----NERI  470 (571)
Q Consensus       403 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p----~~~~  470 (571)
                      +..+...+...|++++|...+++..+...-.++    ...+..+...+...|++++|.+.+++.    ...+    ....
T Consensus        12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~   91 (164)
T 3ro3_A           12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS   91 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            344444444555555555555444332111111    124455555566666666666655554    0011    1335


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCC------CCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          471 WGSLVAACCLYSNMDIGILAADHIFHLAP------NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       471 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      +..+...+...|++++|...++++++..+      .....+..++.++...|++++|.+.+++..+
T Consensus        92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            56666677777888888888877776431      1234677888888888888888888887654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.29  E-value=1.2e-05  Score=79.11  Aligned_cols=163  Identities=9%  Similarity=-0.102  Sum_probs=109.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHhhcCCCHHHHHHHHHHHHHhc---CCCCC-HHH
Q 008276          368 WTSMISAYGMSGQGYDAVALFSKMLMSG-LCPDSI----AFVSVLSACSHAGLLEEGRYYFKIMTEQY---KLVPR-IEH  438 (571)
Q Consensus       368 ~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~  438 (571)
                      +..+...|...|++++|.+++..+...- ..++..    ..+.+...+...|+++.+..+++......   +..+. ..+
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  137 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL  137 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence            5667777888888888888887765521 111111    23333344556788888888887765421   22222 456


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCC----ch
Q 008276          439 FACLVDLLGRAGKVEEAYDLIKQM-------PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLA---PNQ----SG  503 (571)
Q Consensus       439 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~----~~  503 (571)
                      +..++..|...|++++|..+++++       ..++ ...++..++..|...|++++|...++++....   +..    ..
T Consensus       138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  217 (434)
T 4b4t_Q          138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE  217 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence            778888888899999998888765       1122 24567778888888999999999998887754   222    23


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          504 YYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       504 ~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      .+..++..+...|++++|...+.+..+
T Consensus       218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          218 LDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            566777777888999999888777653

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.28  E-value=9.1e-07  Score=76.56  Aligned_cols=96  Identities=11%  Similarity=-0.070  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 008276          437 EHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-N----------------ERIWGSLVAACCLYSNMDIGILAADHIFHLA  498 (571)
Q Consensus       437 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  498 (571)
                      ..+..+...+...|++++|.+.|++. ...| +                ...|..+..++...|++++|+..++++++.+
T Consensus        39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  118 (198)
T 2fbn_A           39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID  118 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            44556666777777777777777765 2222 1                2678888889999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          499 PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       499 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      |++..++..++.+|...|++++|...+++..+..
T Consensus       119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  152 (198)
T 2fbn_A          119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN  152 (198)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999987654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.24  E-value=9.8e-07  Score=68.83  Aligned_cols=83  Identities=10%  Similarity=0.034  Sum_probs=58.0

Q ss_pred             cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHH
Q 008276          449 AGKVEEAYDLIKQM-PM---EP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKR  523 (571)
Q Consensus       449 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  523 (571)
                      .|++++|+..|++. ..   .| +...|..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|..
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            56677777777766 43   24 445667777777777888888888888777777777777777777777888888877


Q ss_pred             HHHHHHhC
Q 008276          524 VRKFMNSK  531 (571)
Q Consensus       524 ~~~~m~~~  531 (571)
                      .+++..+.
T Consensus        83 ~~~~al~~   90 (117)
T 3k9i_A           83 LLLKIIAE   90 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            77776654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.23  E-value=4.3e-05  Score=77.30  Aligned_cols=167  Identities=8%  Similarity=-0.026  Sum_probs=131.4

Q ss_pred             HHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCC-
Q 008276          350 LTEARTVFDQMRC--Q-DVVSWTSMISAYGMSGQ----------GYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAG-  414 (571)
Q Consensus       350 ~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~-  414 (571)
                      .++|.+.++.+..  | +...|+.--..+...|+          ++++++.++++.+.  .| +..+|..-...+.+.+ 
T Consensus        45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSS
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccc
Confidence            4556666666653  3 34456666556655555          89999999999884  44 5668887777788888 


Q ss_pred             -CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---------
Q 008276          415 -LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG-KVEEAYDLIKQM-PMEP-NERIWGSLVAACCLY---------  481 (571)
Q Consensus       415 -~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---------  481 (571)
                       +++++...++++.+.  .+-+...|+....++.+.| .++++++.++++ ...| +..+|+.....+...         
T Consensus       123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~  200 (567)
T 1dce_A          123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ  200 (567)
T ss_dssp             CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred             ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence             779999999999885  3456788888888888888 899999999888 6666 788888877776653         


Q ss_pred             -----CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHH
Q 008276          482 -----SNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGD  520 (571)
Q Consensus       482 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  520 (571)
                           +.++++++.+++++..+|.+..+|..+..++.+.|+.++
T Consensus       201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence                 567999999999999999999999999999999888555

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.20  E-value=4.5e-06  Score=78.86  Aligned_cols=150  Identities=12%  Similarity=0.017  Sum_probs=81.3

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 008276          334 LRLENALVDMYAKCGSLTEARTVFDQMRC--QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACS  411 (571)
Q Consensus       334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~  411 (571)
                      ...+..+...+.+.|++++|...|+....  |+...       +...++.+++...+.          ...|..+..++.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~  241 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI  241 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence            34566777888899999999999998664  32221       122333344333221          136778888899


Q ss_pred             cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCCHHHHH
Q 008276          412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN-ERIWGSLVAA-CCLYSNMDIGI  488 (571)
Q Consensus       412 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~-~~~~g~~~~A~  488 (571)
                      +.|++++|+..+++..+.  .+.+...|..+..+|...|++++|...|+++ .+.|+ ...+..+... ....+..+.+.
T Consensus       242 ~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~  319 (338)
T 2if4_A          242 KLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK  319 (338)
T ss_dssp             TTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998874  2446778888999999999999999999988 66664 4455555544 23467788888


Q ss_pred             HHHHHHHhhCCCCc
Q 008276          489 LAADHIFHLAPNQS  502 (571)
Q Consensus       489 ~~~~~~~~~~p~~~  502 (571)
                      ..|++++...|.++
T Consensus       320 ~~~~~~l~~~p~~~  333 (338)
T 2if4_A          320 EMYKGIFKGKDEGG  333 (338)
T ss_dssp             --------------
T ss_pred             HHHHHhhCCCCCCC
Confidence            99999998888654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.20  E-value=1.3e-05  Score=66.27  Aligned_cols=132  Identities=18%  Similarity=0.114  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC----HH
Q 008276          367 SWTSMISAYGMSGQGYDAVALFSKMLMSGLC-PD----SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR----IE  437 (571)
Q Consensus       367 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~  437 (571)
                      ++..+...+...|++++|+..+++..+.... ++    ..++..+...+...|++++|...+++..+.....++    ..
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            4555666666777777777777666542100 11    125666667777778888888777776543211112    34


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 008276          438 HFACLVDLLGRAGKVEEAYDLIKQM-------PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLA  498 (571)
Q Consensus       438 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  498 (571)
                      .+..+...+...|++++|.+.+++.       +..+ ...++..+...+...|++++|...++++.++.
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  159 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  159 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            5667777788888888888777765       1111 23456677778888999999999998887754

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.17  E-value=6.4e-07  Score=68.99  Aligned_cols=93  Identities=14%  Similarity=0.005  Sum_probs=75.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhHH
Q 008276          435 RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ------SGYYV  506 (571)
Q Consensus       435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~  506 (571)
                      +...+..+...+...|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|++      ...+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            4556777888888888888888888877 3344 67788888889999999999999999999999988      77788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHH
Q 008276          507 LLSNIYAKAGRWGDVKRVRKF  527 (571)
Q Consensus       507 ~l~~~~~~~g~~~~A~~~~~~  527 (571)
                      .++.++...|++++|.+.+++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            888888888877777665543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.15  E-value=7.4e-06  Score=66.21  Aligned_cols=73  Identities=12%  Similarity=0.084  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC-CC-------CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 008276          438 HFACLVDLLGRAGKVEEAYDLIKQM-PM-------EPN-ERIW----GSLVAACCLYSNMDIGILAADHIFHLAPNQSGY  504 (571)
Q Consensus       438 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  504 (571)
                      .|..+..++.+.|++++|+..+++. .+       .|+ ...|    .....++...|++++|+..|++++++.|.+..+
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~  138 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE  138 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence            6667777777777777777666655 34       774 5577    888999999999999999999999999988776


Q ss_pred             HHHHHH
Q 008276          505 YVLLSN  510 (571)
Q Consensus       505 ~~~l~~  510 (571)
                      +..+..
T Consensus       139 ~~~~~~  144 (159)
T 2hr2_A          139 TPGKER  144 (159)
T ss_dssp             CTTHHH
T ss_pred             HHHHHH
Confidence            655533

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.13  E-value=2.2e-05  Score=77.48  Aligned_cols=124  Identities=10%  Similarity=0.022  Sum_probs=92.3

Q ss_pred             HhhcCCCHHHHHHHHHHHHHhcC--CC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHH
Q 008276          409 ACSHAGLLEEGRYYFKIMTEQYK--LV---PR-IEHFACLVDLLGRAGKVEEAYDLIKQM---------PMEPN-ERIWG  472 (571)
Q Consensus       409 ~~~~~~~~~~a~~~~~~~~~~~~--~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~  472 (571)
                      .+...|++++|..++++..+...  +.   |+ ..+++.|+.+|...|++++|+.++++.         +..|+ ..+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            34567888888887777654311  11   22 256788888888888888888877765         23343 45688


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCchh---HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          473 SLVAACCLYSNMDIGILAADHIFH-----LAPNQSGY---YVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       473 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      .|...|...|++++|+.+++++++     ++|+++.+   ...+..++...|++++|..++.++.++-
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888899999999999999998876     56777664   4577788889999999999999998754

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.12  E-value=1.5e-05  Score=59.85  Aligned_cols=64  Identities=14%  Similarity=0.117  Sum_probs=52.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      +...|..+...+...|++++|+..|+++++.+|+++.+|..++.+|...|++++|.+.+++..+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            5667777888888888888888888888888888888888888888888888888888877654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.08  E-value=6.4e-05  Score=73.83  Aligned_cols=159  Identities=9%  Similarity=0.011  Sum_probs=118.7

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 008276          372 ISAYGMSGQGYDAVALFSKMLMSGLCPD----------------SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR  435 (571)
Q Consensus       372 i~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  435 (571)
                      ...+.+.|++++|++.|.++.+......                ...+..+...|...|++++|.+.+..+.+..+..++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            3456778899999999988887422211                124777889999999999999999988764333333


Q ss_pred             H----HHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-----
Q 008276          436 I----EHFACLVDLLGRAGKVEEAYDLIKQM-------PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLA-----  498 (571)
Q Consensus       436 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----  498 (571)
                      .    .+.+.+...+...|+.++|.+++++.       +..+ ...++..+...+...|++++|...++++....     
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            2    23344455556678999999888765       2233 35677889999999999999999999987642     


Q ss_pred             -CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          499 -PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       499 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                       |....++..++.+|...|++++|..++++...
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  203 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART  203 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence             23345888999999999999999999988764

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.08  E-value=2.4e-05  Score=60.48  Aligned_cols=79  Identities=11%  Similarity=-0.026  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          419 GRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFH  496 (571)
Q Consensus       419 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  496 (571)
                      |...|++..+.  .+.+...+..+...|...|++++|+..|++. ...| +...|..+..++...|++++|...|+++++
T Consensus         4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44455555431  2233455555555555566666665555554 2223 344555555555555666666666665555


Q ss_pred             hCC
Q 008276          497 LAP  499 (571)
Q Consensus       497 ~~p  499 (571)
                      ..|
T Consensus        82 ~~~   84 (115)
T 2kat_A           82 AAQ   84 (115)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            544

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.03  E-value=3.6e-05  Score=56.33  Aligned_cols=81  Identities=23%  Similarity=0.298  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 008276          436 IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA  513 (571)
Q Consensus       436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  513 (571)
                      ...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|+..++++.+.+|.++.++..++.++.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            456667777888888888888888776 3334 56778888888888999999999999999999988888888888877


Q ss_pred             hcC
Q 008276          514 KAG  516 (571)
Q Consensus       514 ~~g  516 (571)
                      ..|
T Consensus        89 ~~g   91 (91)
T 1na3_A           89 KQG   91 (91)
T ss_dssp             HHC
T ss_pred             hcC
Confidence            654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.02  E-value=4.1e-06  Score=67.57  Aligned_cols=85  Identities=9%  Similarity=0.047  Sum_probs=64.6

Q ss_pred             hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 008276          448 RAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSN----------MDIGILAADHIFHLAPNQSGYYVLLSNIYAKA  515 (571)
Q Consensus       448 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  515 (571)
                      +.+.+++|++.+++. ...| +...|..+..++...++          +++|+..|+++++++|++..+|..++.+|...
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            344556666665555 3344 55556555555555544          57999999999999999999999999999987


Q ss_pred             C-----------CHHHHHHHHHHHHhCC
Q 008276          516 G-----------RWGDVKRVRKFMNSKG  532 (571)
Q Consensus       516 g-----------~~~~A~~~~~~m~~~~  532 (571)
                      |           ++++|+..|++..+-.
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~  121 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQ  121 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence            5           8999999999988764

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.99  E-value=3e-05  Score=76.91  Aligned_cols=83  Identities=10%  Similarity=0.013  Sum_probs=39.1

Q ss_pred             HHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHH
Q 008276          344 YAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEG  419 (571)
Q Consensus       344 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a  419 (571)
                      +.+.|++++|.+.|++..+   .+...|..+..+|.+.|++++|++.+++..+.  .| +...+..+..++...|++++|
T Consensus        16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA   93 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAA   93 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence            3344555555555544432   23344445555555555555555555555442  22 233444444445555555555


Q ss_pred             HHHHHHHHH
Q 008276          420 RYYFKIMTE  428 (571)
Q Consensus       420 ~~~~~~~~~  428 (571)
                      .+.|+++.+
T Consensus        94 ~~~~~~al~  102 (477)
T 1wao_1           94 LRDYETVVK  102 (477)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555444

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.98  E-value=2.5e-05  Score=74.61  Aligned_cols=113  Identities=6%  Similarity=-0.052  Sum_probs=84.4

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 008276          401 IAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEP-NERIWGSLVAACC  479 (571)
Q Consensus       401 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~  479 (571)
                      ..+..+...+.+.|++++|...|+++.+..   +...          .....+++.      ...| +..+|..+..++.
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~------~~~~~~~~~~~nla~~~~  284 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGA------KLQPVALSCVLNIGACKL  284 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence            456666677777777887777777776520   0000          001111111      1233 4568888999999


Q ss_pred             hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          480 LYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       480 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      +.|++++|+..++++++++|++..+|..++.+|...|++++|+..+++..+..
T Consensus       285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~  337 (370)
T 1ihg_A          285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA  337 (370)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999987654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.97  E-value=5.9e-05  Score=74.48  Aligned_cols=125  Identities=9%  Similarity=-0.069  Sum_probs=90.3

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008276          366 VSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPD----------------SIAFVSVLSACSHAGLLEEGRYYFKIMTEQ  429 (571)
Q Consensus       366 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  429 (571)
                      ..|..+...+.+.|++++|+..|++.++.  .|+                ...|..+..++.+.|++++|+..++++.+.
T Consensus       269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            35666777777788888888888877763  333                367778888888888888888888888774


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHH
Q 008276          430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGIL-AADHI  494 (571)
Q Consensus       430 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~-~~~~~  494 (571)
                        .+.+...|..+..+|...|++++|+..|+++ .+.| +...+..+..++.+.++.+++.. .++++
T Consensus       347 --~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  412 (457)
T 1kt0_A          347 --DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM  412 (457)
T ss_dssp             --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             --CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              2445677888888888888888888888887 5666 45677777777777777776653 34443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.96  E-value=8.8e-05  Score=75.03  Aligned_cols=151  Identities=9%  Similarity=-0.005  Sum_probs=124.7

Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCC----------HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 008276          378 SGQGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSHAGL----------LEEGRYYFKIMTEQYKLVPRIEHFACLVDLL  446 (571)
Q Consensus       378 ~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  446 (571)
                      ....++|++.++++.+  +.|+.. .|+.--.++...++          ++++...++.+.+.  .+-+..+|..-..++
T Consensus        42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l  117 (567)
T 1dce_A           42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL  117 (567)
T ss_dssp             TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence            3445688999999999  566544 66666566666666          89999999999884  355678888888889


Q ss_pred             HhcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc------
Q 008276          447 GRAG--KVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYS-NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA------  515 (571)
Q Consensus       447 ~~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------  515 (571)
                      .+.|  +++++++.++++ ...| +..+|+.-...+.+.| .++++++.++++++.+|.+..+|...+.++.+.      
T Consensus       118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~  197 (567)
T 1dce_A          118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS  197 (567)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence            9999  779999999998 5455 7889998888888888 899999999999999999999999999998874      


Q ss_pred             --------CCHHHHHHHHHHHHhCC
Q 008276          516 --------GRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       516 --------g~~~~A~~~~~~m~~~~  532 (571)
                              +++++|++++++.....
T Consensus       198 ~~~~~~~~~~~~eel~~~~~ai~~~  222 (567)
T 1dce_A          198 GPQGRLPENVLLKELELVQNAFFTD  222 (567)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred             cccccccHHHHHHHHHHHHHHHhhC
Confidence                    56789999988887554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.93  E-value=8.6e-05  Score=54.44  Aligned_cols=72  Identities=10%  Similarity=0.018  Sum_probs=62.2

Q ss_pred             CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 008276          465 EPNERIWGSLVAACCLYSN---MDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIKKMP  537 (571)
Q Consensus       465 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~  537 (571)
                      .+++..+..+..++...++   .++|..+++++++.+|+++.+...++..+.+.|++++|+.+|+++.+.... .|
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~   77 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NL   77 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Cc
Confidence            3477788888888765554   799999999999999999999999999999999999999999999988755 44

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.86  E-value=3.8e-05  Score=61.94  Aligned_cols=108  Identities=12%  Similarity=0.115  Sum_probs=64.9

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-
Q 008276          415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK----------VEEAYDLIKQM-PMEP-NERIWGSLVAACCLY-  481 (571)
Q Consensus       415 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-  481 (571)
                      .+++|.+.++...+.  .+.+...|..+..++...++          +++|+..|++. .+.| +..+|..+..+|... 
T Consensus        17 ~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           17 LFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence            445555555555542  12344445545555554443          34666666665 4455 455666677776655 


Q ss_pred             ----------CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276          482 ----------SNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       482 ----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                                |++++|+..|+++++++|++......+-.       .++|.++.-+....
T Consensus        95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~-------~~ka~el~~~~~~~  147 (158)
T 1zu2_A           95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM-------TAKAPQLHAEAYKQ  147 (158)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH-------HHTHHHHHHHHHHS
T ss_pred             ccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH-------HHhCHhccCccccc
Confidence                      58999999999999999988755444432       25555555554433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.81  E-value=0.0001  Score=56.19  Aligned_cols=66  Identities=8%  Similarity=-0.071  Sum_probs=61.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      +...|..+...+...|++++|+..++++++..|.++.++..++.+|...|++++|+..+++..+..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   68 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT   68 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            456788888999999999999999999999999999999999999999999999999999998664

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.75  E-value=0.00012  Score=56.49  Aligned_cols=75  Identities=11%  Similarity=0.060  Sum_probs=44.4

Q ss_pred             HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          455 AYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       455 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  529 (571)
                      |++.|++. ...| +...|..+...+...|++++|+..++++++.+|.+..+|..++.+|...|++++|...+++..
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34444443 3333 455556666666666666666666666666666666666666666666666666666666554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.67  E-value=0.00022  Score=70.35  Aligned_cols=124  Identities=13%  Similarity=0.022  Sum_probs=87.9

Q ss_pred             HHHhcCChHHHHHHHHHHHHC---CCCCC---H-HHHHHHHHHhhcCCCHHHHHHHHHHHHHhc----C-CCCCH-HHHH
Q 008276          374 AYGMSGQGYDAVALFSKMLMS---GLCPD---S-IAFVSVLSACSHAGLLEEGRYYFKIMTEQY----K-LVPRI-EHFA  440 (571)
Q Consensus       374 ~~~~~~~~~~a~~~~~~m~~~---g~~p~---~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~-~~~~  440 (571)
                      .+...|++++|+.++++.++.   -+.|+   . .+++.|...|...|++++|..++++..+..    | ..|+. .+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            355678888888888876652   12222   2 378888888889999999988888765421    1 22333 5688


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 008276          441 CLVDLLGRAGKVEEAYDLIKQM---------PMEPNE-RIWGSLVAACCLYSNMDIGILAADHIFHL  497 (571)
Q Consensus       441 ~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  497 (571)
                      .|..+|...|++++|+.++++.         +..|+. .+...+..++...+.+++|+.+|.++.+.
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999888876         223432 24455566677889999999999998763

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.67  E-value=0.0005  Score=54.96  Aligned_cols=109  Identities=9%  Similarity=-0.103  Sum_probs=51.8

Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 008276          380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR----AGKVEEA  455 (571)
Q Consensus       380 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A  455 (571)
                      ++++|+++|++..+.| .|+..    +...|...+.+++|.+.|++..+.    .+...+..|...|..    .+++++|
T Consensus        10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A           10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence            4566666666666654 22222    444455555556666666655542    234444445555544    4445555


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhh
Q 008276          456 YDLIKQMPMEPNERIWGSLVAACCL----YSNMDIGILAADHIFHL  497 (571)
Q Consensus       456 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~  497 (571)
                      .+.|++.-...++..+..|...|..    .++.++|...|+++.+.
T Consensus        81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            5544444111233334444444443    34444444444444443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.64  E-value=0.00023  Score=51.81  Aligned_cols=66  Identities=20%  Similarity=0.233  Sum_probs=60.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      +...+..+...+...|++++|+..++++++..|.++.++..++.++...|++++|...+++..+..
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~   73 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD   73 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            355778888889999999999999999999999999999999999999999999999999987654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.47  E-value=0.0022  Score=51.14  Aligned_cols=112  Identities=8%  Similarity=-0.114  Sum_probs=92.0

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 008276          414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCL----YSNMDIGIL  489 (571)
Q Consensus       414 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~  489 (571)
                      +++++|.+.|++..+. + .++..    +...|...+.+++|.+.|++.-...+...+..|...|..    .+++++|..
T Consensus         9 ~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A            9 KDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            4678999999998875 4 33333    778888888899999999988323577888888888887    789999999


Q ss_pred             HHHHHHhhCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 008276          490 AADHIFHLAPNQSGYYVLLSNIYAK----AGRWGDVKRVRKFMNSKGI  533 (571)
Q Consensus       490 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~  533 (571)
                      .|+++.+.  .++.++..|+..|..    .+++++|.+++++..+.|.
T Consensus        83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            99999887  467889999999999    8999999999999988774

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.46  E-value=0.0041  Score=57.76  Aligned_cols=138  Identities=14%  Similarity=-0.011  Sum_probs=76.3

Q ss_pred             CChhHHHHHHHHH--HhcC---ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhc----CC----CHHHHHHHHHHHHH
Q 008276          363 QDVVSWTSMISAY--GMSG---QGYDAVALFSKMLMSGLCPDSI-AFVSVLSACSH----AG----LLEEGRYYFKIMTE  428 (571)
Q Consensus       363 ~~~~~~~~li~~~--~~~~---~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~----~~----~~~~a~~~~~~~~~  428 (571)
                      .+...|...+++.  ...+   ...+|..+|++.++  ..|+.. .|..+..++..    .+    ........++....
T Consensus       192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a  269 (372)
T 3ly7_A          192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT  269 (372)
T ss_dssp             SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence            3555565555443  2222   35788899999888  567643 44444333321    00    01111111221111


Q ss_pred             hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 008276          429 QYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS  502 (571)
Q Consensus       429 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  502 (571)
                      ....+.+...|..+...+...|++++|...++++ ...|+...|..+...+.-.|++++|.+.|+++..++|..+
T Consensus       270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            1122445566666666666667777777777766 3446666666666666677777777777777777777543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.41  E-value=0.0005  Score=66.56  Aligned_cols=61  Identities=8%  Similarity=0.100  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCch---hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          469 RIWGSLVAACCLYSNMDIGILAADHIFH-----LAPNQSG---YYVLLSNIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       469 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~  529 (571)
                      .+++.+..+|...|++++|+.+++++++     ++|+++.   .++.|+.+|...|++++|..++++..
T Consensus       341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            4566666667677777777777776665     3344443   46677777777777777777777664

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.40  E-value=6.5e-07  Score=84.17  Aligned_cols=118  Identities=8%  Similarity=0.021  Sum_probs=74.2

Q ss_pred             ChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhc
Q 008276           63 NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG  142 (571)
Q Consensus        63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  142 (571)
                      .+.+|..|.++....+++.+|++.|-+  ..|+..|..++....+.|.+++-+..+...++.  .-++..=+.|+-+|++
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk  128 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAK  128 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHT
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHh
Confidence            455677777777777777777665533  335556777777777777777777766655544  2344444567777777


Q ss_pred             CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccC
Q 008276          143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDM  191 (571)
Q Consensus       143 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  191 (571)
                      .++..+.++++.       .|+..-...+.+-|...|.++.|.-+|..+
T Consensus       129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~i  170 (624)
T 3lvg_A          129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV  170 (624)
T ss_dssp             SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred             hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence            776655444332       355555556666677777777776666655

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.38  E-value=0.00042  Score=51.74  Aligned_cols=66  Identities=12%  Similarity=-0.006  Sum_probs=45.4

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 008276          434 PRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAP  499 (571)
Q Consensus       434 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  499 (571)
                      .+...+..+..+|...|++++|++.|+++ ...| +...|..+..+|...|++++|+..+++++++.|
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            34556667777777777777777777766 3334 455677777777777777777777777776654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.33  E-value=0.00072  Score=50.17  Aligned_cols=80  Identities=13%  Similarity=0.112  Sum_probs=62.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 008276          441 CLVDLLGRAGKVEEAYDLIKQM-PMEP-NER-IWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR  517 (571)
Q Consensus       441 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  517 (571)
                      .....+.+.|++++|.+.++++ ...| +.. .|..+..++...|++++|+..|+++++.+|++..++..        +.
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~   76 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM   76 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence            3566778899999999999887 4455 566 88888888999999999999999999999988877633        44


Q ss_pred             HHHHHHHHHHH
Q 008276          518 WGDVKRVRKFM  528 (571)
Q Consensus       518 ~~~A~~~~~~m  528 (571)
                      +.+|...+++.
T Consensus        77 ~~~a~~~~~~~   87 (99)
T 2kc7_A           77 VMDILNFYNKD   87 (99)
T ss_dssp             HHHHHHHHCCT
T ss_pred             HHHHHHHHHHH
Confidence            55666665543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.33  E-value=0.001  Score=49.30  Aligned_cols=53  Identities=8%  Similarity=0.057  Sum_probs=27.3

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276          408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIE-HFACLVDLLGRAGKVEEAYDLIKQM  462 (571)
Q Consensus       408 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~  462 (571)
                      ..+...|++++|...++++.+.  .+.+.. .+..+..+|...|++++|.+.|++.
T Consensus         8 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a   61 (99)
T 2kc7_A            8 KELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA   61 (99)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3444555555555555555542  122334 4555555555555555555555554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.31  E-value=0.00097  Score=64.69  Aligned_cols=60  Identities=5%  Similarity=0.135  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCch---hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          470 IWGSLVAACCLYSNMDIGILAADHIFH-----LAPNQSG---YYVLLSNIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       470 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~  529 (571)
                      +++.+..+|...|++++|+.+++++++     .+|+++.   .+..|+.+|...|++++|..++++..
T Consensus       331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            445555555555555555555555544     2233333   35555666666666666666555544

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=97.24  E-value=0.027  Score=42.97  Aligned_cols=141  Identities=9%  Similarity=0.001  Sum_probs=94.9

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008276          375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE  454 (571)
Q Consensus       375 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  454 (571)
                      +.-.|..++..++..+....   .+..-|+-++--....-+-+-..+.++.+-+.+.+              ..+|++..
T Consensus        17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr   79 (172)
T 1wy6_A           17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS   79 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred             HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence            34456677777777666553   13334444554444445555555555555432221              12444444


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008276          455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK  534 (571)
Q Consensus       455 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  534 (571)
                      ...-+-.++  .+....+..+..+...|+-+.-.+++..+....+.++.....++.+|.+.|+..+|.+++++..++|++
T Consensus        80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            444444442  244556777888889999999999999887777889999999999999999999999999999999975

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.21  E-value=0.0024  Score=61.86  Aligned_cols=95  Identities=12%  Similarity=-0.011  Sum_probs=67.2

Q ss_pred             cCCCHHHHHHHHHHHHHhc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 008276          412 HAGLLEEGRYYFKIMTEQY--KLVPR----IEHFACLVDLLGRAGKVEEAYDLIKQM---------PMEPN-ERIWGSLV  475 (571)
Q Consensus       412 ~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~  475 (571)
                      ..|++++|..++++..+..  -+.|+    ..+++.+..+|...|++++|+.++++.         +..|+ ..+++.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            4567788887777765431  12222    256778888888888888888887765         23443 44688888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHh-----hCCCCchhHH
Q 008276          476 AACCLYSNMDIGILAADHIFH-----LAPNQSGYYV  506 (571)
Q Consensus       476 ~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~  506 (571)
                      ..|...|++++|+.+++++++     ++|+++.+-.
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  425 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE  425 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            889999999999999998877     4577775544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.15  E-value=0.0045  Score=60.03  Aligned_cols=101  Identities=12%  Similarity=-0.027  Sum_probs=72.2

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHH
Q 008276          407 LSACSHAGLLEEGRYYFKIMTEQY--KLVPR----IEHFACLVDLLGRAGKVEEAYDLIKQM---------PMEPN-ERI  470 (571)
Q Consensus       407 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~  470 (571)
                      +..+...|++++|...+++..+..  -+.|+    ..+++.++.+|...|++++|+.+++++         +..|+ ..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            344556778888888887776431  12222    256788888888888888888887765         23343 446


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCchhHHH
Q 008276          471 WGSLVAACCLYSNMDIGILAADHIFH-----LAPNQSGYYVL  507 (571)
Q Consensus       471 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~~  507 (571)
                      ++.|...|...|++++|+.+++++++     ++|+++.+-..
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~  415 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL  415 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            78888899999999999999998877     56887765544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.05  E-value=0.0022  Score=56.99  Aligned_cols=88  Identities=10%  Similarity=0.142  Sum_probs=65.1

Q ss_pred             HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhhCCCC-chhHHHHHHHHHh-cCCHHH
Q 008276          452 VEEAYDLIKQM-PMEPN---ERIWGSLVAACCL-----YSNMDIGILAADHIFHLAPNQ-SGYYVLLSNIYAK-AGRWGD  520 (571)
Q Consensus       452 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~-~g~~~~  520 (571)
                      ...|...+++. .+.|+   ...|..+...|.+     .|+.++|.+.|+++++++|+. ..++...+..++. .|+.++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            34555666655 55665   4567777777777     488888888888888888864 8888888888877 488888


Q ss_pred             HHHHHHHHHhCCCCCCCce
Q 008276          521 VKRVRKFMNSKGIKKMPGA  539 (571)
Q Consensus       521 A~~~~~~m~~~~~~~~~~~  539 (571)
                      |.+++++.........|+.
T Consensus       259 a~~~L~kAL~a~p~~~P~~  277 (301)
T 3u64_A          259 FDEALDRALAIDPESVPHN  277 (301)
T ss_dssp             HHHHHHHHHHCCGGGCSSC
T ss_pred             HHHHHHHHHcCCCCCCCCh
Confidence            8888888887776654553

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.89  E-value=0.0093  Score=55.36  Aligned_cols=133  Identities=14%  Similarity=0.050  Sum_probs=92.3

Q ss_pred             CCCCHHHHHHHHHHhh--cC---CCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHh---cC-----C---HHHHHHH
Q 008276          396 LCPDSIAFVSVLSACS--HA---GLLEEGRYYFKIMTEQYKLVPRI-EHFACLVDLLGR---AG-----K---VEEAYDL  458 (571)
Q Consensus       396 ~~p~~~~~~~l~~~~~--~~---~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g-----~---~~~A~~~  458 (571)
                      .+.+...|...+++..  ..   .+..+|..+|+++.+.   .|+. ..+..+..+|.-   .+     .   ...+.+.
T Consensus       190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a  266 (372)
T 3ly7_A          190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN  266 (372)
T ss_dssp             SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence            4556667777776643  22   3457899999999875   5553 444444333321   11     1   1122222


Q ss_pred             HHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          459 IKQMP-MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       459 ~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      ...+. ...++.+|..+...+...|++++|...+++++.++| +...|..++.++.-.|++++|.+.+++....+
T Consensus       267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~  340 (372)
T 3ly7_A          267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR  340 (372)
T ss_dssp             HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            22332 244788888888888888999999999999999996 57788899999999999999999999887654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.88  E-value=0.0059  Score=44.48  Aligned_cols=68  Identities=16%  Similarity=0.095  Sum_probs=52.3

Q ss_pred             CCCHHHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 008276          433 VPRIEHFACLVDLLGRAGK---VEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPN  500 (571)
Q Consensus       433 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  500 (571)
                      +.++..+..+..++...++   .++|..++++. ...| ++..+..+...+.+.|++++|+..|+++++.+|+
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4566777777777765544   68888888877 5555 5677777788888899999999999999888887

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.80  E-value=0.012  Score=44.03  Aligned_cols=75  Identities=13%  Similarity=0.060  Sum_probs=54.7

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 008276          435 RIEHFACLVDLLGRAGKVEEAYDLIKQM-----P----MEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY  505 (571)
Q Consensus       435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  505 (571)
                      +...+..+...+.+.|+++.|...|+.+     +    -.+....+..+..++.+.|+++.|...++++.++.|++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            3344455666666677777766666654     1    123466788899999999999999999999999999998776


Q ss_pred             HHHH
Q 008276          506 VLLS  509 (571)
Q Consensus       506 ~~l~  509 (571)
                      ..+.
T Consensus        84 ~n~~   87 (104)
T 2v5f_A           84 GNLK   87 (104)
T ss_dssp             HHHH
T ss_pred             hhHH
Confidence            5553

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.70  E-value=0.097  Score=55.73  Aligned_cols=155  Identities=15%  Similarity=0.060  Sum_probs=93.3

Q ss_pred             HHHHHcCCchHHHH-HHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCH
Q 008276          272 AVYANNSMPAEAVD-LYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSL  350 (571)
Q Consensus       272 ~~~~~~g~~~~A~~-~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  350 (571)
                      ......+++++|.+ ++..      .++......++..+.+.|..+.|.++.+.       +.     .-.......|++
T Consensus       607 ~~~~~~~~~~~a~~~~l~~------i~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~  668 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVLPN------VEGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQL  668 (814)
T ss_dssp             HHHHHTTCHHHHHHHTGGG------CCCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCH
T ss_pred             hHHHHhCCHHHHHHHHHhc------CCchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCH
Confidence            34456778888876 4411      11122235666666777777777765531       11     112345667889


Q ss_pred             HHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 008276          351 TEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQY  430 (571)
Q Consensus       351 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  430 (571)
                      +.|.++.+.+.  +...|..+...+.+.++++.|.+.|.++..         |..+...+...++.+...++-+..... 
T Consensus       669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-  736 (814)
T 3mkq_A          669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-  736 (814)
T ss_dssp             HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-
Confidence            99988877764  567888899999999999999988887644         334444455566666555554444332 


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276          431 KLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM  462 (571)
Q Consensus       431 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  462 (571)
                      +   +   ++.-..+|.+.|++++|++++.++
T Consensus       737 ~---~---~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          737 G---K---FNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             T---C---HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             C---c---hHHHHHHHHHcCCHHHHHHHHHHc
Confidence            1   1   122334455566666666665554

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.70  E-value=0.0057  Score=48.66  Aligned_cols=93  Identities=10%  Similarity=-0.015  Sum_probs=69.5

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHH
Q 008276          414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG---KVEEAYDLIKQM-PME-P--NERIWGSLVAACCLYSNMDI  486 (571)
Q Consensus       414 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~  486 (571)
                      .....+.+.|.+.... + .++..+...+..++++.+   +.++++.+|++. ... |  +...+-.+.-++.+.|++++
T Consensus        12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~   89 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK   89 (152)
T ss_dssp             HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence            3456677777776653 3 477788888888999988   666899888887 223 5  34555667777899999999


Q ss_pred             HHHHHHHHHhhCCCCchhHHHH
Q 008276          487 GILAADHIFHLAPNQSGYYVLL  508 (571)
Q Consensus       487 A~~~~~~~~~~~p~~~~~~~~l  508 (571)
                      |.+.++++++.+|++..+....
T Consensus        90 A~~y~~~lL~ieP~n~QA~~Lk  111 (152)
T 1pc2_A           90 ALKYVRGLLQTEPQNNQAKELE  111 (152)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHH
Confidence            9999999999999887665543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.60  E-value=0.012  Score=46.73  Aligned_cols=66  Identities=8%  Similarity=0.028  Sum_probs=39.6

Q ss_pred             CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhC-C-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276          466 PNERIWGSLVAACCLYS---NMDIGILAADHIFHLA-P-NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       466 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                      ++..+...+..++++.+   +.++++.+++.+.+.+ | .+...+..++-+|.+.|++++|+++++.+.+.
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i  100 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  100 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            45555555666666655   4446666666666665 4 34556666666666666666666666666543

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=96.21  E-value=0.00015  Score=68.50  Aligned_cols=243  Identities=10%  Similarity=0.072  Sum_probs=156.2

Q ss_pred             cccCChhHHHHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccCC--CChhhHHHHHH
Q 008276           26 YTLLSGDACNDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEITN--KNVVFFNVLIR  103 (571)
Q Consensus        26 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~  103 (571)
                      ..+..|..|+++..+.+.+.+|.+.|-    +.+   |+..|..++....+.|.+++-.+.+.-..+  +++..=+.|+-
T Consensus        52 n~p~VWs~LgkAqL~~~~v~eAIdsyI----kA~---Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~  124 (624)
T 3lvg_A           52 NEPAVWSQLAKAQLQKGMVKEAIDSYI----KAD---DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIF  124 (624)
T ss_dssp             CCCCCSSSHHHHTTTSSSCTTTTTSSC----CCS---CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHH
T ss_pred             CCccHHHHHHHHHHccCchHHHHHHHH----hCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence            345678889999998898888877665    222   667788999999999999999988876654  46667788999


Q ss_pred             HHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhC--------------------CCC
Q 008276          104 SYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVG--------------------LDY  163 (571)
Q Consensus       104 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g--------------------~~~  163 (571)
                      +|++.++..+-.+++       -.|+..-...+.+-|...|.++.|+-+|..+-...                    -.-
T Consensus       125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn  197 (624)
T 3lvg_A          125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN  197 (624)
T ss_dssp             HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred             HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999998876644332       24666667777777777777777665554321100                    023


Q ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHccC-CCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 008276          164 NLFNGNGLVAMYGKCGCLKEARRVLNDM-PSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVT  242 (571)
Q Consensus       164 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~  242 (571)
                      ++.||-.+..+|...+++.-|.-+--.+ ..+|  -...++..|-..|.+++-+.+++.-... -......|+.|--.|+
T Consensus       198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvhad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYs  274 (624)
T 3lvg_A          198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS  274 (624)
T ss_dssp             SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHhCchHHHHHHHhcchhcccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHH
Confidence            4556666666676666665553322111 1111  1122444566677788877777766531 2356667777777787


Q ss_pred             CCCCccHHHHHHHHhh-CCC-------CChhhHHHHHHHHHHcCCchHHHH
Q 008276          243 NTSPENVLSVKEMFLK-LDN-------KNLVSWNVMIAVYANNSMPAEAVD  285 (571)
Q Consensus       243 ~~~~~~~~~a~~~~~~-~~~-------~~~~~~~~l~~~~~~~g~~~~A~~  285 (571)
                      +-....+-+-.++|.. +.-       .....|.-++-.|.+-.+++.|..
T Consensus       275 KY~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l  325 (624)
T 3lvg_A          275 KFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  325 (624)
T ss_dssp             SSCTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence            7765444443333332 222       244578888888888888887754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.16  E-value=0.064  Score=57.12  Aligned_cols=130  Identities=11%  Similarity=-0.028  Sum_probs=74.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHH
Q 008276          338 NALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE  417 (571)
Q Consensus       338 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~  417 (571)
                      ..++..+.+.|.++.|.++.+.     .   ..-.......|+++.|.++.+.      ..+...|..+...+.+.++++
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~~~~  698 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLTD------ESAEMKWRALGDASLQRFNFK  698 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcCCHH
Confidence            5566666777777777766532     1   1112334566777777776533      235667777777777777777


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276          418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHI  494 (571)
Q Consensus       418 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  494 (571)
                      .|.++|.++..          |..+...+...|+.+...++.+......+   ++....++.+.|++++|++++.++
T Consensus       699 ~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~---~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          699 LAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETTGK---FNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc---hHHHHHHHHHcCCHHHHHHHHHHc
Confidence            77777776632          33455555556666655444433311111   233334455667777777766544

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=95.91  E-value=1.7  Score=43.93  Aligned_cols=114  Identities=7%  Similarity=-0.063  Sum_probs=64.7

Q ss_pred             CChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008276          379 GQGYDAVALFSKMLMSGLCPDSI----AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE  454 (571)
Q Consensus       379 ~~~~~a~~~~~~m~~~g~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  454 (571)
                      .+.+.|...|....... ..+..    ....+.......+...++...+......   ..+.....-.+....+.|+++.
T Consensus       228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~  303 (618)
T 1qsa_A          228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG  303 (618)
T ss_dssp             HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred             cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence            36788888887776532 22322    2233333344445345555566554332   2333334444555557788888


Q ss_pred             HHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          455 AYDLIKQMPMEP--NERIWGSLVAACCLYSNMDIGILAADHIFH  496 (571)
Q Consensus       455 A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  496 (571)
                      |...|+.++..+  .....-=+.+++...|+.++|..+|+++.+
T Consensus       304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            888888884332  222222244566677888888888888764

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.81  E-value=0.053  Score=40.35  Aligned_cols=66  Identities=9%  Similarity=-0.076  Sum_probs=55.7

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-------CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          467 NERIWGSLVAACCLYSNMDIGILAADHIFHLA-------PNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      +......+...+...|+++.|..-|+.+++..       +....++..++.+|.+.|++++|..++++..+..
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~   76 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            44555678888999999999999999998853       3456789999999999999999999999987643

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=95.51  E-value=3  Score=43.97  Aligned_cols=149  Identities=10%  Similarity=-0.050  Sum_probs=71.6

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHhcC
Q 008276          375 YGMSGQGYDAVALFSKMLMSGLCPDSIA--FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHF--ACLVDLLGRAG  450 (571)
Q Consensus       375 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g  450 (571)
                      +.-.|+.+....++..+.+.  . +...  ...+.-++...|+.+.+..+.+.+...  ..|....-  .++.-+|+-.|
T Consensus       500 ~vGTgn~~ai~~LL~~~~e~--~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTG  574 (963)
T 4ady_A          500 MLGTGKPEAIHDMFTYSQET--Q-HGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTG  574 (963)
T ss_dssp             HTTCCCHHHHHHHHHHHHHC--S-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSC
T ss_pred             hcccCCHHHHHHHHHHHhcc--C-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCC
Confidence            33456666666666665553  1 2222  222233344567777777777776542  12222221  12334455666


Q ss_pred             CHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH--hcCCH-HHHHHHH
Q 008276          451 KVEEAYDLIKQMPMEPNERIWGSLVA--ACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA--KAGRW-GDVKRVR  525 (571)
Q Consensus       451 ~~~~A~~~~~~~~~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~-~~A~~~~  525 (571)
                      +.....+++..+...++...-...+-  ++...|+.+.+.++++.+.+..  ++.+....+.++.  ..|+. .+|...+
T Consensus       575 n~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L  652 (963)
T 4ady_A          575 NNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVL  652 (963)
T ss_dssp             CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred             CHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence            76666667766622333333222222  2333555555555544333322  3344444434333  34443 5677777


Q ss_pred             HHHHh
Q 008276          526 KFMNS  530 (571)
Q Consensus       526 ~~m~~  530 (571)
                      ..+..
T Consensus       653 ~~L~~  657 (963)
T 4ady_A          653 DPLTK  657 (963)
T ss_dssp             HHHHT
T ss_pred             HHHcc
Confidence            77753

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.51  E-value=0.16  Score=38.71  Aligned_cols=92  Identities=10%  Similarity=-0.028  Sum_probs=60.4

Q ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHH
Q 008276          415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE---AYDLIKQM-PME-P--NERIWGSLVAACCLYSNMDIG  487 (571)
Q Consensus       415 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A  487 (571)
                      ....+.+.|...... + .++..+-..+..++++.....+   ++.+++++ ... |  .....-.|.-++.+.|++++|
T Consensus        16 ~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence            344555555555443 3 2666666667777777776555   67777766 222 3  223344456678899999999


Q ss_pred             HHHHHHHHhhCCCCchhHHHH
Q 008276          488 ILAADHIFHLAPNQSGYYVLL  508 (571)
Q Consensus       488 ~~~~~~~~~~~p~~~~~~~~l  508 (571)
                      .+.++.+++..|.+..+....
T Consensus        94 ~~~~~~lL~~eP~n~QA~~Lk  114 (126)
T 1nzn_A           94 LKYVRGLLQTEPQNNQAKELE  114 (126)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHH
Confidence            999999999999887765543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.36  E-value=0.48  Score=38.66  Aligned_cols=50  Identities=10%  Similarity=0.088  Sum_probs=23.6

Q ss_pred             HHHHhhCCChHHHHHHHHHHHHhhcCCCChhHHHHHHHHhhcCCChHHHHHHHcccC
Q 008276           35 NDILDKYPDIKTLKKLHAQIIINQHLHSNPSIGLKLMRTYGACGQMVDTRHVFDEIT   91 (571)
Q Consensus        35 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~   91 (571)
                      ..+....|+++.|.++...+-       +...|..|.......|+++-|.++|....
T Consensus        12 F~LAL~lg~l~~A~e~a~~l~-------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKLN-------DSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHHHhcCCHHHHHHHHHHhC-------CHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            334444555555555443321       34445555555555555555555554433

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.18  E-value=0.084  Score=41.35  Aligned_cols=99  Identities=10%  Similarity=0.003  Sum_probs=45.7

Q ss_pred             CHHHHHHHHHHhhcCCCH------HHHHHHHHHHHHhcCCCCCHH-HHHHHHHH------HHhcCCHHHHHHHHHhC---
Q 008276          399 DSIAFVSVLSACSHAGLL------EEGRYYFKIMTEQYKLVPRIE-HFACLVDL------LGRAGKVEEAYDLIKQM---  462 (571)
Q Consensus       399 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~---  462 (571)
                      |..+|-..+....+.|+.      ++..++|++...  .++|+.. .|...+..      +...++.++|.++|+.+   
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~   89 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN   89 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            444666666666655666      666666666655  4444421 11111111      12224455555555444   


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 008276          463 PMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPN  500 (571)
Q Consensus       463 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  500 (571)
                      ..+- ...|.....--.+.|+.+.|.+++.+++...|.
T Consensus        90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            1111 333433333344455555555555555555543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.16  E-value=1.1  Score=36.64  Aligned_cols=126  Identities=13%  Similarity=0.030  Sum_probs=61.9

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008276          376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEA  455 (571)
Q Consensus       376 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  455 (571)
                      .+.|+++.|.++.+++      .+...|..|.......|+++-|.+.|.+...          +..+.-.|...|+.+.-
T Consensus        16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L   79 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKL   79 (177)
T ss_dssp             HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHH
T ss_pred             HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHH
Confidence            3456666666555543      2455666666666666666666666665532          23344444455555544


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276          456 YDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM  528 (571)
Q Consensus       456 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  528 (571)
                      .++-+....+-   -++.....+...|++++++++|.+.-+        +..-+......|-.+.|.++.+++
T Consensus        80 ~kla~iA~~~g---~~n~af~~~l~lGdv~~~i~lL~~~~r--------~~eA~~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           80 SKMQNIAQTRE---DFGSMLLNTFYNNSTKERSSIFAEGGS--------LPLAYAVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHTCHHHHHHHHHHTTC--------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHCc---cHHHHHHHHHHcCCHHHHHHHHHHCCC--------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence            44433221111   123333444556666666666654322        111111122356666777776655

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.06  E-value=0.36  Score=49.79  Aligned_cols=54  Identities=9%  Similarity=-0.008  Sum_probs=50.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          476 AACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       476 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  529 (571)
                      ..|...|+++.|+.+.+++....|.+..+|..|+.+|...|+++.|+-.+..+.
T Consensus       345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            446678999999999999999999999999999999999999999999999884

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.86  E-value=0.05  Score=48.40  Aligned_cols=81  Identities=14%  Similarity=0.149  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHHHh-cCCH
Q 008276          417 EEGRYYFKIMTEQYKLVPR---IEHFACLVDLLGR-----AGKVEEAYDLIKQM-PMEP--NERIWGSLVAACCL-YSNM  484 (571)
Q Consensus       417 ~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~-~g~~  484 (571)
                      ..|...+++..+.   .|+   ...|..+...|..     -|+.++|.+.|++. .+.|  +..++..+...++. .|+.
T Consensus       180 ~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          180 HAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            4555555555543   444   3456667777766     37777777777776 4455  25566666666666 4778


Q ss_pred             HHHHHHHHHHHhhCCC
Q 008276          485 DIGILAADHIFHLAPN  500 (571)
Q Consensus       485 ~~A~~~~~~~~~~~p~  500 (571)
                      +++.+.+++++...|.
T Consensus       257 ~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          257 AGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHcCCCC
Confidence            8888888888776654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=94.81  E-value=0.1  Score=39.86  Aligned_cols=81  Identities=7%  Similarity=-0.037  Sum_probs=62.8

Q ss_pred             HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhC-C-CCchhHHHHHHHHHhcCCHHHHHHH
Q 008276          452 VEEAYDLIKQM--PMEPNERIWGSLVAACCLYSNMDI---GILAADHIFHLA-P-NQSGYYVLLSNIYAKAGRWGDVKRV  524 (571)
Q Consensus       452 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~  524 (571)
                      +..+.+-+.+.  .-.|+..+--.+.+++.+..+...   ++.+++.+.+.+ | ........|+-++.+.|++++|+++
T Consensus        17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~   96 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   96 (126)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            34444444433  124778888888999998887765   999999988877 5 4667888999999999999999999


Q ss_pred             HHHHHhCC
Q 008276          525 RKFMNSKG  532 (571)
Q Consensus       525 ~~~m~~~~  532 (571)
                      ++.+.+..
T Consensus        97 ~~~lL~~e  104 (126)
T 1nzn_A           97 VRGLLQTE  104 (126)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            99998654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=93.95  E-value=0.72  Score=36.22  Aligned_cols=97  Identities=13%  Similarity=0.219  Sum_probs=56.9

Q ss_pred             CChhHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCCHH----HHHHHHH---HhhcCCCHHHHHHHHHHHHHh
Q 008276          363 QDVVSWTSMISAYGMSGQG------YDAVALFSKMLMSGLCPDSI----AFVSVLS---ACSHAGLLEEGRYYFKIMTEQ  429 (571)
Q Consensus       363 ~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~g~~p~~~----~~~~l~~---~~~~~~~~~~a~~~~~~~~~~  429 (571)
                      .|..+|-..+...-+.|+.      ++..++|++.... ++|+..    .|..+.-   .+...++.++|.++|+.+...
T Consensus        11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~   89 (161)
T 4h7y_A           11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN   89 (161)
T ss_dssp             CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            4566677766666666777      6777777776664 555431    1111110   112336777777777777553


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276          430 YKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM  462 (571)
Q Consensus       430 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  462 (571)
                       .-.- ...|....+--.++|++..|.+++.+.
T Consensus        90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A  120 (161)
T 4h7y_A           90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA  120 (161)
T ss_dssp             -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence             2122 556666666666777777777777765

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.64  E-value=0.21  Score=47.62  Aligned_cols=54  Identities=13%  Similarity=0.079  Sum_probs=26.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276          475 VAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFM  528 (571)
Q Consensus       475 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  528 (571)
                      +.++...|++++++..++.+...+|-+...|..++.+|.+.|+..+|++.|+++
T Consensus       178 ~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~  231 (388)
T 2ff4_A          178 AEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  231 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            334444455555555555555555555445555555555555555555444444

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=93.54  E-value=8.8  Score=40.58  Aligned_cols=164  Identities=10%  Similarity=0.082  Sum_probs=80.6

Q ss_pred             hccCCchHHHHHHHHHHHHcCCCCChhHHHHHH--HHHHhcCCHHHHHHHHhhCCC-CChhH-HH---HHHHHHHhcCCh
Q 008276          309 CGDLSALLLGRKIHRYVERKKLQPNLRLENALV--DMYAKCGSLTEARTVFDQMRC-QDVVS-WT---SMISAYGMSGQG  381 (571)
Q Consensus       309 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~-~~~~~-~~---~li~~~~~~~~~  381 (571)
                      +.-.|+.+....++..+.+..   +..+...+.  -++...|+.+.+..+++.+.. .+... |.   ++.-+|+..|+.
T Consensus       500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~  576 (963)
T 4ady_A          500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN  576 (963)
T ss_dssp             HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH
T ss_pred             hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH
Confidence            445566666666666665532   222222222  233355666666666555542 23322 22   233456667776


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 008276          382 YDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV-EEAYDLIK  460 (571)
Q Consensus       382 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~  460 (571)
                      .....++..+... ...+......+.-++...|+.+.+.++++.+.+.  ..|.+..-..+.-+....|.. .++.+++.
T Consensus       577 ~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~  653 (963)
T 4ady_A          577 SAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLD  653 (963)
T ss_dssp             HHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred             HHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence            6666677777663 2222223333333444455556666666655542  234443333333334434432 56667777


Q ss_pred             hCCCCCCHHHHHHHHHHH
Q 008276          461 QMPMEPNERIWGSLVAAC  478 (571)
Q Consensus       461 ~~~~~p~~~~~~~l~~~~  478 (571)
                      .+..++|..+-..-+.++
T Consensus       654 ~L~~D~d~~Vrq~Ai~AL  671 (963)
T 4ady_A          654 PLTKDPVDFVRQAAMIAL  671 (963)
T ss_dssp             HHHTCSSHHHHHHHHHHH
T ss_pred             HHccCCCHHHHHHHHHHH
Confidence            764455555443333333

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=93.31  E-value=1.5  Score=34.09  Aligned_cols=74  Identities=11%  Similarity=0.063  Sum_probs=46.0

Q ss_pred             CCCHHHHHHHHHHHHhcCCHH---HHHHHHHhC-CCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 008276          433 VPRIEHFACLVDLLGRAGKVE---EAYDLIKQM-PMEP-N-ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV  506 (571)
Q Consensus       433 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  506 (571)
                      .|+..+-..+..++.+....+   +++.+++.+ ...| + -...-.|.-++.+.|++++|.+..+.+++..|++..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            466666666677777766543   456666665 2223 2 223334555677788888888888888888887765443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=92.88  E-value=0.62  Score=35.69  Aligned_cols=73  Identities=11%  Similarity=0.062  Sum_probs=39.3

Q ss_pred             CCHHHHHHHHHHHHhcCCH---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 008276          434 PRIEHFACLVDLLGRAGKV---EEAYDLIKQM-PMEP--NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV  506 (571)
Q Consensus       434 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  506 (571)
                      |+..+--.+..++.+....   .+++.+++++ ...|  ....+-.+.-++.+.|++++|.+..+.+++..|++..+..
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~  116 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  116 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence            4444444555556555543   3455555554 2223  2233444555666666666666666666666666655433

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=92.82  E-value=0.72  Score=36.97  Aligned_cols=124  Identities=14%  Similarity=0.084  Sum_probs=63.0

Q ss_pred             CCCCCCHH--HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHhC--
Q 008276          394 SGLCPDSI--AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRI-------EHFACLVDLLGRAGKVEEAYDLIKQM--  462 (571)
Q Consensus       394 ~g~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~--  462 (571)
                      .|+.|...  ++..-++.+...+.++.|+-+.+.+....+..|+.       .++..+.+++...|++..|...|++.  
T Consensus        12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            34445333  33444566677777887777777655432333331       24455667777777777777777664  


Q ss_pred             --CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          463 --PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       463 --~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  529 (571)
                        ..-+ +......+. .   ......       -.. .+.+.+.-..++.+|.+.|++++|+.+++.+.
T Consensus        92 ~~k~l~k~~s~~~~~~-~---~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip  149 (167)
T 3ffl_A           92 QKKALSKTSKVRPSTG-N---SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIP  149 (167)
T ss_dssp             HHHCC-------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred             HHHHHhcCCCcccccc-c---cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence              1001 111110000 0   000000       000 12334567789999999999999999998654

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=92.54  E-value=2.8  Score=32.19  Aligned_cols=138  Identities=9%  Similarity=-0.002  Sum_probs=76.1

Q ss_pred             HHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHH
Q 008276          274 YANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEA  353 (571)
Q Consensus       274 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  353 (571)
                      +.-.|..++..+++.+....   .+..-|+.++--....-+-+-..++++.+-+.   .|.          ..+|++...
T Consensus        17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrV   80 (172)
T 1wy6_A           17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV   80 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred             HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHH
Confidence            34456777777777766652   34455555554444444444444444443321   111          122333333


Q ss_pred             HHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 008276          354 RTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQ  429 (571)
Q Consensus       354 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  429 (571)
                      ...+-.+. .+.......++.+...|+-++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.++-++
T Consensus        81 i~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k  154 (172)
T 1wy6_A           81 VECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK  154 (172)
T ss_dssp             HHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            33333322 2233445556667777777777777777433 25667777777777777777777777777777665

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=91.86  E-value=7.1  Score=35.33  Aligned_cols=113  Identities=8%  Similarity=-0.043  Sum_probs=67.5

Q ss_pred             HHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHHHHH----HHHHHhCCCCCCcccHHHHHHHhh
Q 008276           66 IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHV----YKNMSVHGFDPDCYTYPCVLKACS  141 (571)
Q Consensus        66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~g~~p~~~~~~~li~~~~  141 (571)
                      .|.++..-|.+.+++++|++++..           -...+.+.|++..|-++    .+.+.+.+++++......++..+.
T Consensus        35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~  103 (312)
T 2wpv_A           35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA  103 (312)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            455666777778888888876432           23455666776665554    455566677777777777776655


Q ss_pred             cCCC-----hHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhCCCHHHHHHHHc
Q 008276          142 GSNS-----LLVGLQIHCSVVKVGL--DYNLFNGNGLVAMYGKCGCLKEARRVLN  189 (571)
Q Consensus       142 ~~~~-----~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~  189 (571)
                      ....     .+-..+...+-.+.|-  .-++..+..+...|.+.|++.+|+..|-
T Consensus       104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            4321     1122222333333321  1256677777777777777777777664

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.60  E-value=5  Score=38.81  Aligned_cols=182  Identities=12%  Similarity=0.091  Sum_probs=115.7

Q ss_pred             CCHHHHHHHHhhCCC---------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh----hcCC
Q 008276          348 GSLTEARTVFDQMRC---------QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC----SHAG  414 (571)
Q Consensus       348 ~~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~----~~~~  414 (571)
                      |+++.|.+.+-.+.+         ........++..|...|+++...+.+.-+....-.. ......+++.+    ....
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence            678888877655432         234457778899999999999988887666532222 22223333332    2223


Q ss_pred             CHH--HHHHHHHHHHHhc--CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCC---HHHHHHHHHHHH
Q 008276          415 LLE--EGRYYFKIMTEQY--KLVP---RIEHFACLVDLLGRAGKVEEAYDLIKQM-----PMEPN---ERIWGSLVAACC  479 (571)
Q Consensus       415 ~~~--~a~~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~---~~~~~~l~~~~~  479 (571)
                      ..+  .-..+.+.+....  .+-.   .......|...+...|++.+|.+++..+     +..+.   ...+..-++.|.
T Consensus       109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l  188 (445)
T 4b4t_P          109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI  188 (445)
T ss_dssp             TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            222  2222222221100  1111   1234567889999999999999999987     22221   345666778899


Q ss_pred             hcCCHHHHHHHHHHHHh---hCCCCc----hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          480 LYSNMDIGILAADHIFH---LAPNQS----GYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       480 ~~g~~~~A~~~~~~~~~---~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      ..+|+.+|..++.++..   ..+..+    ..+...+..+...++|.+|-+.|.+..+
T Consensus       189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            99999999999998753   123332    3667888888899999999988877753

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=90.67  E-value=1.4  Score=35.29  Aligned_cols=31  Identities=16%  Similarity=0.171  Sum_probs=20.7

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 008276          435 RIEHFACLVDLLGRAGKVEEAYDLIKQMPME  465 (571)
Q Consensus       435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  465 (571)
                      +.+.-..+..+|.+.|++++|+.+++.++.+
T Consensus       121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k  151 (167)
T 3ffl_A          121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSR  151 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred             hHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence            3444455677777777777887777777433

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=89.74  E-value=5.9  Score=30.78  Aligned_cols=68  Identities=12%  Similarity=0.051  Sum_probs=47.2

Q ss_pred             CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          465 EPNERIWGSLVAACCLYSN---MDIGILAADHIFHLAPN-QSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       465 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      .|+..+--.+.+++.+..+   ..+++.+++.+.+..|. .......|+-++.+.|++++|+++.+.+.+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e  107 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  107 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            4666666666777766554   34677777777777663 45566677778888888888888887777553

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=89.25  E-value=1.7  Score=31.31  Aligned_cols=63  Identities=10%  Similarity=0.210  Sum_probs=48.9

Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008276          380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD  444 (571)
Q Consensus       380 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  444 (571)
                      +.-+..+-++.+....+.|++......+++|.+.+++..|.++++.++.+.+..  ..+|..+++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence            455677777778888889999999999999999999999999999988753333  345655554

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=89.25  E-value=14  Score=34.86  Aligned_cols=163  Identities=10%  Similarity=-0.017  Sum_probs=90.4

Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHHHHHc-CCCC---ChhHHHHHHHHHHhcC-CHHHHHHHHhhCCC---CChhHH---
Q 008276          300 ISVASVLPACGDLSALLLGRKIHRYVERK-KLQP---NLRLENALVDMYAKCG-SLTEARTVFDQMRC---QDVVSW---  368 (571)
Q Consensus       300 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~---  368 (571)
                      .....+...|.+.|+.++...++...... +.-+   .......+++.+.... ..+.-.++..+..+   .+-.+|   
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~   99 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556677777788887777777665431 1111   2233455666665532 33333333333321   111223   


Q ss_pred             ---HHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHhhcCCCHHHHHHHHHHHHHhc-CCCCCHHHH
Q 008276          369 ---TSMISAYGMSGQGYDAVALFSKMLMS--GLCPDS---IAFVSVLSACSHAGLLEEGRYYFKIMTEQY-KLVPRIEHF  439 (571)
Q Consensus       369 ---~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~  439 (571)
                         ..++..|...|++.+|.+++.++.+.  ......   ..+..-++.|...+++..+...+....... .+.+++...
T Consensus       100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~  179 (394)
T 3txn_A          100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ  179 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence               14677788888888888888777663  111111   245555666777888888888887765432 222333222


Q ss_pred             ----HHHHHHHH-hcCCHHHHHHHHHhC
Q 008276          440 ----ACLVDLLG-RAGKVEEAYDLIKQM  462 (571)
Q Consensus       440 ----~~l~~~~~-~~g~~~~A~~~~~~~  462 (571)
                          ..-...+. ..+++..|...|-+.
T Consensus       180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea  207 (394)
T 3txn_A          180 GALDLQSGILHAADERDFKTAFSYFYEA  207 (394)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence                22233445 677888887777654

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=89.15  E-value=4.7  Score=28.83  Aligned_cols=88  Identities=13%  Similarity=0.057  Sum_probs=64.8

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 008276          142 GSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE  221 (571)
Q Consensus       142 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  221 (571)
                      -....++|..|-+.+...+.  ...+--.-+..+...|++++|..+.+...-||...|-+|..  .+.|..+++..-+.+
T Consensus        18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~   93 (115)
T 2uwj_G           18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAG   93 (115)
T ss_dssp             TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence            45567888888888887663  22222333456788999999999999999999999877655  478888888888888


Q ss_pred             HHHCCCCCCHHHH
Q 008276          222 MESLRIKPDADTM  234 (571)
Q Consensus       222 m~~~g~~p~~~t~  234 (571)
                      +..+| .|....|
T Consensus        94 la~sg-~p~~q~F  105 (115)
T 2uwj_G           94 LGGSS-DPALADF  105 (115)
T ss_dssp             HHTCS-SHHHHHH
T ss_pred             HHhCC-CHHHHHH
Confidence            87765 3443333

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=89.06  E-value=2.7  Score=32.25  Aligned_cols=67  Identities=12%  Similarity=0.053  Sum_probs=38.2

Q ss_pred             CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276          465 EPNERIWGSLVAACCLYSN---MDIGILAADHIFHLAP-NQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       465 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                      .|+..+--.+.+++.+..+   ..+++.+++.+.+.+| .....+..++-++.+.|++++|+++.+.+.+.
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            3455555555555555443   3356666666666555 23445556666666666666666666666543

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=88.88  E-value=5  Score=28.75  Aligned_cols=88  Identities=13%  Similarity=-0.008  Sum_probs=63.8

Q ss_pred             cCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHH
Q 008276          142 GSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCRE  221 (571)
Q Consensus       142 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  221 (571)
                      -....++|..|-+.+...+.  ...+--.-+..+...|++++|..+.+...-||...|-+|...  +.|..+++..-+.+
T Consensus        19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~   94 (116)
T 2p58_C           19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNR   94 (116)
T ss_dssp             TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence            45567888888888887663  222223334567889999999999999999999998877654  67888888888877


Q ss_pred             HHHCCCCCCHHHH
Q 008276          222 MESLRIKPDADTM  234 (571)
Q Consensus       222 m~~~g~~p~~~t~  234 (571)
                      +..+| .|....|
T Consensus        95 la~sg-~p~~q~F  106 (116)
T 2p58_C           95 LARSQ-DPRIQTF  106 (116)
T ss_dssp             HTTCC-CHHHHHH
T ss_pred             HHhCC-CHHHHHH
Confidence            77665 3443333

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=88.32  E-value=1.8  Score=44.72  Aligned_cols=127  Identities=18%  Similarity=0.116  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHhcCC-HHHHHHHHhhCCCCCh--hHH--HHHHHHHHhcC-ChHHHHHHHHHHHHC------CCCCCHH--
Q 008276          336 LENALVDMYAKCGS-LTEARTVFDQMRCQDV--VSW--TSMISAYGMSG-QGYDAVALFSKMLMS------GLCPDSI--  401 (571)
Q Consensus       336 ~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~--~~~--~~li~~~~~~~-~~~~a~~~~~~m~~~------g~~p~~~--  401 (571)
                      ....++..+...++ .+.|..+|+++.+.++  ..+  ..++..+.+.+ +--+|..++.+..+.      ...+...  
T Consensus       250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~  329 (754)
T 4gns_B          250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS  329 (754)
T ss_dssp             HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence            33455555555655 5778888888765322  222  22222222222 223456666555431      1222110  


Q ss_pred             ---------HHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 008276          402 ---------AFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPM  464 (571)
Q Consensus       402 ---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  464 (571)
                               ....-.+-|...|+++.|+.+-++....  .+.+..+|..|+.+|...|+++.|+-.++.++.
T Consensus       330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm  399 (754)
T 4gns_B          330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMPR  399 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred             ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence                     1111123355678888888888887753  344567888888888888888888888888753

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=87.50  E-value=7.4  Score=42.97  Aligned_cols=81  Identities=7%  Similarity=-0.026  Sum_probs=40.0

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHH
Q 008276          403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR---IEHFACLVDLLGRAGKVEEAYDLIKQMP-MEPNERIWGSLVAAC  478 (571)
Q Consensus       403 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~  478 (571)
                      |..++..+.+.+.++.+.++-+...+..+-.++   ...|..+.+.+...|++++|-..+-.++ ..-...++..|+...
T Consensus       902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~l  981 (1139)
T 4fhn_B          902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQL  981 (1139)
T ss_dssp             HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            444555555566666666555555443111111   1135555666666666666666555441 112344555555555


Q ss_pred             HhcCC
Q 008276          479 CLYSN  483 (571)
Q Consensus       479 ~~~g~  483 (571)
                      +..|.
T Consensus       982 ce~~~  986 (1139)
T 4fhn_B          982 TKQGK  986 (1139)
T ss_dssp             HHHCC
T ss_pred             HhCCC
Confidence            54443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=87.38  E-value=8  Score=42.71  Aligned_cols=64  Identities=6%  Similarity=-0.131  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CCch----hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          469 RIWGSLVAACCLYSNMDIGILAADHIFHLAP-NQSG----YYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       469 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      ..|..++..+.+.+-++.+.++.+.+++..+ ++..    .|..+...+...|++++|...+-.+.+..
T Consensus       900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~  968 (1139)
T 4fhn_B          900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP  968 (1139)
T ss_dssp             HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence            3455566666666666666666666666442 2221    45566666666777777766666555443

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=87.08  E-value=18  Score=33.04  Aligned_cols=113  Identities=11%  Similarity=-0.022  Sum_probs=67.6

Q ss_pred             HHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHHHHHH----HHHHhCCCCCCcccHHHHHHHhh
Q 008276           66 IGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVY----KNMSVHGFDPDCYTYPCVLKACS  141 (571)
Q Consensus        66 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~----~~m~~~g~~p~~~~~~~li~~~~  141 (571)
                      +|.++..-|.+.+++++|++++-           .-...+.+.|+...+-++-    +.+.+.++++|......++..+.
T Consensus        37 ~~RTi~~Ry~~~k~y~eAidLL~-----------~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~  105 (336)
T 3lpz_A           37 ETRLVAARYSKQGNWAAAVDILA-----------SVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR  105 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            44556667778888888887643           2334566667766655544    55566677888777777777665


Q ss_pred             cCCCh-HHHHHHHHHH----HHhC--CCCchhHHHHHHHHHHhCCCHHHHHHHHc
Q 008276          142 GSNSL-LVGLQIHCSV----VKVG--LDYNLFNGNGLVAMYGKCGCLKEARRVLN  189 (571)
Q Consensus       142 ~~~~~-~~a~~~~~~~----~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  189 (571)
                      ....- ..-..+.+.+    .+.|  ..-++..+..+...|.+.+++.+|+..|-
T Consensus       106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i  160 (336)
T 3lpz_A          106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV  160 (336)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            54421 1112233333    2333  22355666777777777777777777663

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=86.15  E-value=14  Score=30.98  Aligned_cols=155  Identities=9%  Similarity=0.030  Sum_probs=96.2

Q ss_pred             CCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHh
Q 008276           61 HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKAC  140 (571)
Q Consensus        61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~  140 (571)
                      .++..+....+..+.+.|..+....+.+.+..++...-...+.++.+.++.+ +...+..+..   .++...-...+.++
T Consensus        30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL  105 (211)
T 3ltm_A           30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVAL  105 (211)
T ss_dssp             CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence            4566777777777777777555556666666777777777777777777643 4444444443   35555555666666


Q ss_pred             hcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHH
Q 008276          141 SGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR  220 (571)
Q Consensus       141 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  220 (571)
                      .+.++.+.. ..+..+..   .++..+-...+.++.+.|+.+....+.+.+..++...-...+.++.+.+. .++...+.
T Consensus       106 ~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~  180 (211)
T 3ltm_A          106 GQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAME  180 (211)
T ss_dssp             HHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHH
T ss_pred             HHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHH
Confidence            666664433 33333332   46666666777777777776555555555555676666667777777765 55666666


Q ss_pred             HHHH
Q 008276          221 EMES  224 (571)
Q Consensus       221 ~m~~  224 (571)
                      .+.+
T Consensus       181 ~~l~  184 (211)
T 3ltm_A          181 KLAE  184 (211)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=86.03  E-value=2.3  Score=37.23  Aligned_cols=57  Identities=14%  Similarity=0.265  Sum_probs=37.7

Q ss_pred             HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 008276          445 LLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ  501 (571)
Q Consensus       445 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  501 (571)
                      .+.+.|++++|++....- .-.| |...-..|+..+|-.|++++|.+-++...+++|..
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~   64 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY   64 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence            345667777777665544 3344 56666667777777777777777777777777653

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=85.47  E-value=18  Score=31.66  Aligned_cols=52  Identities=15%  Similarity=0.036  Sum_probs=26.5

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276          376 GMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE  428 (571)
Q Consensus       376 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  428 (571)
                      .+.|..+++++....-++. -+-|...-..+++.+|-.|+++.|..-++...+
T Consensus         8 l~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~   59 (273)
T 1zbp_A            8 LSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIK   59 (273)
T ss_dssp             TTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            3455555555555554443 122444444455555555555555555555543

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=85.39  E-value=6.4  Score=28.35  Aligned_cols=49  Identities=12%  Similarity=0.200  Sum_probs=37.2

Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 008276          461 QMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLS  509 (571)
Q Consensus       461 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  509 (571)
                      .+..-|++....+.+++|.+.+|+..|+++++-+...-.+...+|..++
T Consensus        38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l   86 (109)
T 1v54_E           38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI   86 (109)
T ss_dssp             TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred             ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence            3366788888888888888888888888888887776654555566553

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=85.27  E-value=5.9  Score=30.27  Aligned_cols=63  Identities=11%  Similarity=0.276  Sum_probs=49.6

Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008276          380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD  444 (571)
Q Consensus       380 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  444 (571)
                      |.-+..+-++.+...++.|++......+++|-+.+++..|.++|+-++.+.+  +...+|..+++
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq  130 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ  130 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence            4456667777777888999999999999999999999999999999987533  33445655554

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=84.60  E-value=7.4  Score=36.79  Aligned_cols=69  Identities=9%  Similarity=0.039  Sum_probs=47.4

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHH----hcCCCCCHHH
Q 008276          369 TSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE----QYKLVPRIEH  438 (571)
Q Consensus       369 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~  438 (571)
                      ..++..+...|++++++..+..+... -+-+...+..++.++...|+..+|.+.|+.+.+    ..|+.|+..+
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            34556667778888888777777663 233666777888888888888888877776543    3367777654

>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A

Probab=84.39  E-value=38  Score=34.40  Aligned_cols=17  Identities=6%  Similarity=0.218  Sum_probs=14.6

Q ss_pred             HHhcCCHHHHHHHHHHH
Q 008276          512 YAKAGRWGDVKRVRKFM  528 (571)
Q Consensus       512 ~~~~g~~~~A~~~~~~m  528 (571)
                      +.+.|+|++|++.++++
T Consensus       548 ~~~~g~~~~AL~~i~~L  564 (661)
T 2qx5_A          548 LYFNKQWQETLSQMELL  564 (661)
T ss_dssp             HHHTTCHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHhC
Confidence            47899999999998864

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=83.99  E-value=13  Score=30.80  Aligned_cols=30  Identities=0%  Similarity=-0.292  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 008276          468 ERIWGSLVAACCLYSNMDIGILAADHIFHL  497 (571)
Q Consensus       468 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  497 (571)
                      ...|......+-..|++++|..+|+..++.
T Consensus       115 AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~  144 (202)
T 3esl_A          115 SLFYEEFSKLLENAQFFLEAKVLLELGAEN  144 (202)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            334444444444455555555555555443

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=82.10  E-value=30  Score=31.55  Aligned_cols=126  Identities=10%  Similarity=0.036  Sum_probs=65.3

Q ss_pred             HHHHHCCCCCCHHHHHHHHHHhccCCchH-HHHHHHHHHH----HcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 008276          288 LQMEVHGIEPNAISVASVLPACGDLSALL-LGRKIHRYVE----RKK--LQPNLRLENALVDMYAKCGSLTEARTVFDQM  360 (571)
Q Consensus       288 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  360 (571)
                      +-+.+.++++|......++..+.....-+ .-.++.+.++    +.|  ..-++.....+...|.+.+++.+|+..|-.-
T Consensus        83 evy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg  162 (336)
T 3lpz_A           83 DTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLG  162 (336)
T ss_dssp             HHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhc
Confidence            33444556666666666655554433211 1122333332    223  2345667778888999999999998888533


Q ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276          361 RCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTE  428 (571)
Q Consensus       361 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  428 (571)
                      ..++...+..++--+...+...              .++...-..++ -|...++...|..+++...+
T Consensus       163 ~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~  215 (336)
T 3lpz_A          163 TKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS  215 (336)
T ss_dssp             CTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence            3333355544444333332211              11222222233 34556788888777666554

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.92  E-value=41  Score=32.35  Aligned_cols=184  Identities=11%  Similarity=0.077  Sum_probs=112.9

Q ss_pred             CCchHHHHHHHHHHHC-----CCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHH----HHHhcC
Q 008276          278 SMPAEAVDLYLQMEVH-----GIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVD----MYAKCG  348 (571)
Q Consensus       278 g~~~~A~~~~~~m~~~-----g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~  348 (571)
                      |+++.|++-+-.+.+.     ...........++..|...++++...+.+..+.+..-.. ......+++    ......
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence            4566676666555432     233455667777777888888887777666555432121 122223332    222222


Q ss_pred             C--HHHHHHHHhhCCC---C-------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHhh
Q 008276          349 S--LTEARTVFDQMRC---Q-------DVVSWTSMISAYGMSGQGYDAVALFSKMLMS--GLCPD---SIAFVSVLSACS  411 (571)
Q Consensus       349 ~--~~~a~~~~~~~~~---~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~~~~~l~~~~~  411 (571)
                      .  .+.-..+.+.+..   .       .......|...+...|++.+|..++..+...  |..+.   ...+...++.|.
T Consensus       109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l  188 (445)
T 4b4t_P          109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI  188 (445)
T ss_dssp             TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            2  2222333333321   1       1223466788899999999999999998642  32222   235667788899


Q ss_pred             cCCCHHHHHHHHHHHHHh-cCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 008276          412 HAGLLEEGRYYFKIMTEQ-YKLVPRI----EHFACLVDLLGRAGKVEEAYDLIKQM  462 (571)
Q Consensus       412 ~~~~~~~a~~~~~~~~~~-~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~  462 (571)
                      ..+++..|..++.++... ....+.+    ..+...+..+...+++.+|.+.|.++
T Consensus       189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~  244 (445)
T 4b4t_P          189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI  244 (445)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            999999999999987532 1222222    45677888888999999998887766

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=80.77  E-value=23  Score=29.33  Aligned_cols=155  Identities=9%  Similarity=0.033  Sum_probs=88.6

Q ss_pred             CCChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHh
Q 008276           61 HSNPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKAC  140 (571)
Q Consensus        61 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~  140 (571)
                      .++..+....+..+...+..+....+.+.+..++...-...+.++.+.+..+ +...+..+..   .++...-...+.++
T Consensus        25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL  100 (201)
T 3ltj_A           25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVAL  100 (201)
T ss_dssp             CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence            3455666666666666666555555555566666666666667777776643 3334444433   24555555566666


Q ss_pred             hcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHH
Q 008276          141 SGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCR  220 (571)
Q Consensus       141 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  220 (571)
                      .+.++.+....+. .+..   .++..+-...+.++.+.|+.+....+.+.+..++...-...+.++...|. +++...+.
T Consensus       101 ~~~~~~~~~~~L~-~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~  175 (201)
T 3ltj_A          101 GQIGDERAVEPLI-KALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAME  175 (201)
T ss_dssp             HHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHH
T ss_pred             HHhCcHHHHHHHH-HHHc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHH
Confidence            6666543333332 2322   45666666667777777765544445555555666666666666666665 45555555


Q ss_pred             HHHH
Q 008276          221 EMES  224 (571)
Q Consensus       221 ~m~~  224 (571)
                      .+..
T Consensus       176 ~~l~  179 (201)
T 3ltj_A          176 KLAE  179 (201)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5554

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=80.02  E-value=34  Score=30.89  Aligned_cols=180  Identities=12%  Similarity=0.094  Sum_probs=97.2

Q ss_pred             HHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHH
Q 008276          175 YGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKE  254 (571)
Q Consensus       175 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~  254 (571)
                      -...|++=+|.+.           |.++..-|.+.+++++|++++..--                               
T Consensus        23 ~I~~G~yYEAhQ~-----------~Rtl~~Ry~~~~~~~eAidlL~~ga-------------------------------   60 (312)
T 2wpv_A           23 KIKAGDYYEAHQT-----------LRTIANRYVRSKSYEHAIELISQGA-------------------------------   60 (312)
T ss_dssp             HHHHTCHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHH-------------------------------
T ss_pred             HhhccChHHHHHH-----------HHHHHHHHHHhcCHHHHHHHHHHHH-------------------------------
Confidence            3455666666665           4566667777777877777764431                               


Q ss_pred             HHhhCCCCChhhHHHHHHHHHHcCCchHHHH----HHHHHHHCCCCCCHHHHHHHHHHhccCCchH-HHHHHHHHHH---
Q 008276          255 MFLKLDNKNLVSWNVMIAVYANNSMPAEAVD----LYLQMEVHGIEPNAISVASVLPACGDLSALL-LGRKIHRYVE---  326 (571)
Q Consensus       255 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~----~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~---  326 (571)
                                       ..+.+.|+...|-+    +++-+.+.+++++......++..+......+ .-.++.+.++   
T Consensus        61 -----------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS  123 (312)
T 2wpv_A           61 -----------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWS  123 (312)
T ss_dssp             -----------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHH
T ss_pred             -----------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHH
Confidence                             12334444444333    3444455667777766666666654432111 1123333333   


Q ss_pred             -HcCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCCH
Q 008276          327 -RKKL--QPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMS---GQGYDAVALFSKMLMSGLCPDS  400 (571)
Q Consensus       327 -~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~p~~  400 (571)
                       +.|.  .-++.....+...|.+.+++.+|+..|-.-...|...+..++--+...   |...++              +.
T Consensus       124 ~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dl  189 (312)
T 2wpv_A          124 IKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AE  189 (312)
T ss_dssp             HHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HH
T ss_pred             hhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchH--------------HH
Confidence             3321  236677778888899999999988877633322344444444333332   222111              11


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276          401 IAFVSVLSACSHAGLLEEGRYYFKIMTE  428 (571)
Q Consensus       401 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~  428 (571)
                      ..-..++ -|.-.++...|..+++...+
T Consensus       190 f~~RaVL-~yL~l~n~~~A~~~~~~f~~  216 (312)
T 2wpv_A          190 FFSRLVF-NYLFISNISFAHESKDIFLE  216 (312)
T ss_dssp             HHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence            1112222 34456788888888877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	571
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-07

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 41/343 (11%), Positives = 101/343 (29%), Gaps = 11/343 (3%)

Query: 181 LKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPS 240
            +   ++    P  +      + + + Q  R D +        +++  P      S L +
Sbjct: 19  ERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFST--LAIKQNPLLAEAYSNLGN 75

Query: 241 VTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI 300
           V     +   +++     L  K       +    A  +       +   +      P+  
Sbjct: 76  VYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY 135

Query: 301 SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFD-- 358
            V S L         L   K       +         + L  ++   G +  A   F+  
Sbjct: 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA 195

Query: 359 -QMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE 417
             +    + ++ ++ +    +     AVA + +  +S     ++   ++       GL++
Sbjct: 196 VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA-LSLSPNHAVVHGNLACVYYEQGLID 254

Query: 418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPNERIWGSLVAA 477
                ++   E     P  + +  L + L   G V EA D                   A
Sbjct: 255 LAIDTYRRAIELQPHFP--DAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312

Query: 478 CCLYS--NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRW 518
                  N++  +        + P  +  +  L+++  + G+ 
Sbjct: 313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 355

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	571
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.93
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.9
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.65
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.64
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.27
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.22
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.17
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.15
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.12
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.1
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.1
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.09
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.09
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.91
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.8
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.79
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.79
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.72
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.71
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.69
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.68
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.64
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.63
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.61
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.56
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.53
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.52
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.36
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.34
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.33
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.3
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.29
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.27
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.26
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.19
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.17
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.15
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.14
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.11
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.11
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.06
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.05
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.03
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.0
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.85
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.84
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.77
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.76
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.69
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.66
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.49
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.48
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.47
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.2
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	97.02
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	96.09
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.75
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.59
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.51
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.05
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.81
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.75
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	89.32
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	83.09

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=9.6e-23  Score=196.85  Aligned_cols=375  Identities=11%  Similarity=0.060  Sum_probs=286.3

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 008276          101 LIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGC  180 (571)
Q Consensus       101 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~  180 (571)
                      +...+.+.|++++|++.|+++.+.. +-+...+..+...+.+.|++++|...++.+++.. +.+..++..+..+|.+.|+
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence            4456777888888888888887652 2245566777777778888888888888887764 3456677777777778888


Q ss_pred             HHHHHHHHccCCC---CCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHh
Q 008276          181 LKEARRVLNDMPS---KDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFL  257 (571)
Q Consensus       181 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~  257 (571)
                      +++|+..+.....   .+...+..........+....+.............                             
T Consensus        83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------  133 (388)
T d1w3ba_          83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-----------------------------  133 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-----------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc-----------------------------
Confidence            8888777766653   23333444444444455555555444444332211                             


Q ss_pred             hCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHH
Q 008276          258 KLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLE  337 (571)
Q Consensus       258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  337 (571)
                           ...............+....+...+.+..... +-+...+..+...+...|+++.|...++...+.. +.+...+
T Consensus       134 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~  206 (388)
T d1w3ba_         134 -----LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAY  206 (388)
T ss_dssp             -----CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             -----cccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHH
Confidence                 22334444555666677777777777766543 3455677777788888899999999998888765 4466778


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcC
Q 008276          338 NALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHA  413 (571)
Q Consensus       338 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~  413 (571)
                      ..+...+...|++++|...++....   .+...+..+...+.+.|++++|+..|+++.+  +.| +..++..+...+...
T Consensus       207 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~  284 (388)
T d1w3ba_         207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEK  284 (388)
T ss_dssp             HHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence            8888899999999999998887653   4666788889999999999999999999998  455 456888899999999


Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 008276          414 GLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAA  491 (571)
Q Consensus       414 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~  491 (571)
                      |++++|...++....  ..+.+...+..+...+...|++++|++.|++. ...| +..++..+...+...|++++|+..|
T Consensus       285 ~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  362 (388)
T d1w3ba_         285 GSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY  362 (388)
T ss_dssp             SCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             CCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999887  44567788889999999999999999999987 6667 5778899999999999999999999


Q ss_pred             HHHHhhCCCCchhHHHHHHHHHhcCC
Q 008276          492 DHIFHLAPNQSGYYVLLSNIYAKAGR  517 (571)
Q Consensus       492 ~~~~~~~p~~~~~~~~l~~~~~~~g~  517 (571)
                      +++++++|+++.+|..++.+|.+.|+
T Consensus       363 ~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         363 KEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999998885

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.9e-20  Score=180.53  Aligned_cols=373  Identities=11%  Similarity=0.030  Sum_probs=295.9

Q ss_pred             HHHHhhcCCChHHHHHHHcccCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhcCCCh
Q 008276           70 LMRTYGACGQMVDTRHVFDEITN--K-NVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSGSNSL  146 (571)
Q Consensus        70 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~  146 (571)
                      +...+.+.|++++|.+.|+.+.+  | +...+..+...+.+.|++++|+..|++..+.. +-+..++..+...+...|++
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~   83 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence            56677889999999999998753  3 67789999999999999999999999998753 33556788889999999999


Q ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCC---CCCchhHHHHHHHHHhCCCchHHHHHHHHHH
Q 008276          147 LVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMP---SKDVVTWNSMVAGYAQNGRFDEALDVCREME  223 (571)
Q Consensus       147 ~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  223 (571)
                      ++|...+....+.. +.+..............+....+........   .................+....+...+....
T Consensus        84 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (388)
T d1w3ba_          84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             cccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence            99999999998876 3344444445555555555555544443322   2344555666666777777777777777665


Q ss_pred             HCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHH
Q 008276          224 SLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVA  303 (571)
Q Consensus       224 ~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~  303 (571)
                      ..  .|+                                +...+..+...+...|++++|...+.+..+.. +-+...+.
T Consensus       163 ~~--~~~--------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~  207 (388)
T d1w3ba_         163 ET--QPN--------------------------------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYI  207 (388)
T ss_dssp             HH--CTT--------------------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             cc--Ccc--------------------------------hhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHH
Confidence            43  222                                34567777888889999999999999988753 33567788


Q ss_pred             HHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCC
Q 008276          304 SVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQ  380 (571)
Q Consensus       304 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~  380 (571)
                      .+...+...|++++|...++...+.+ +.+...+..+...+.+.|++++|...|++..+   .+...|..+...+...|+
T Consensus       208 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  286 (388)
T d1w3ba_         208 NLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS  286 (388)
T ss_dssp             HHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC
T ss_pred             HHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            88889999999999999999988876 45667777888999999999999999988653   456789999999999999


Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008276          381 GYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIK  460 (571)
Q Consensus       381 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  460 (571)
                      +++|++.++..... .+.+...+..+...+...|++++|...|++..+.  .+.+...+..+..+|.+.|++++|.+.|+
T Consensus       287 ~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~  363 (388)
T d1w3ba_         287 VAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYK  363 (388)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999998885 3456678888999999999999999999998763  34456788899999999999999999999


Q ss_pred             hC-CCCC-CHHHHHHHHHHHHhcCC
Q 008276          461 QM-PMEP-NERIWGSLVAACCLYSN  483 (571)
Q Consensus       461 ~~-~~~p-~~~~~~~l~~~~~~~g~  483 (571)
                      ++ .+.| +..+|..+..++.+.||
T Consensus       364 ~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         364 EAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            87 7778 57789999999888775

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=9.2e-15  Score=136.52  Aligned_cols=242  Identities=12%  Similarity=-0.030  Sum_probs=148.9

Q ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 008276          267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAK  346 (571)
Q Consensus       267 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  346 (571)
                      .-.....+.+.|++++|+..|+++++.. +-+..+|..+..++...|+++.|...+..+.+.. +.+...+..+..+|..
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~   99 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN   99 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccc
Confidence            3356777888899999999998888754 3356777778888888888888888888887765 3455666667777777


Q ss_pred             cCCHHHHHHHHhhCCC--CChhH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHH
Q 008276          347 CGSLTEARTVFDQMRC--QDVVS-WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYF  423 (571)
Q Consensus       347 ~~~~~~a~~~~~~~~~--~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~  423 (571)
                      .|++++|.+.++....  |+... +.......                    ...+.......+..+...+.+.++...+
T Consensus       100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~  159 (323)
T d1fcha_         100 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELF  159 (323)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHH
Confidence            7777777777766542  11100 00000000                    0000000011111222334455666666


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 008276          424 KIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ  501 (571)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  501 (571)
                      ....+......+...+..+...+...|++++|+..+++. ...| +..+|..+...+...|++++|+..++++++.+|++
T Consensus       160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  239 (323)
T d1fcha_         160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY  239 (323)
T ss_dssp             HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc
Confidence            665554333445566666666677777777777777665 3333 45566666667777777777777777777777777


Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          502 SGYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       502 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      +.+|..++.+|.+.|++++|++.|++..+
T Consensus       240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         240 IRSRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            77777777777777777777777766654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.5e-14  Score=133.46  Aligned_cols=263  Identities=11%  Similarity=0.014  Sum_probs=191.7

Q ss_pred             HhcCCCCccHHHHHHHHhhCC---CCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchH
Q 008276          240 SVTNTSPENVLSVKEMFLKLD---NKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALL  316 (571)
Q Consensus       240 ~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~  316 (571)
                      .+.+.|+  .+.|...|++..   +.+..+|..+..+|...|++++|...|.+..+.. +-+...+..+...+...|+++
T Consensus        28 ~~~~~g~--~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~  104 (323)
T d1fcha_          28 RRLQEGD--LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQR  104 (323)
T ss_dssp             HHHHTTC--HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccccc
Confidence            3455556  899999998875   4467789999999999999999999999998754 335678888888999999999


Q ss_pred             HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 008276          317 LGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGL  396 (571)
Q Consensus       317 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~  396 (571)
                      +|.+.++.+....... ............                ..+.......+..+...+.+.+|.+.+.+..+...
T Consensus       105 ~A~~~~~~~~~~~~~~-~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p  167 (323)
T d1fcha_         105 QACEILRDWLRYTPAY-AHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP  167 (323)
T ss_dssp             HHHHHHHHHHHTSTTT-GGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             ccccchhhHHHhccch-HHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence            9999999988764211 111100000000                00111111122234455667888888888776322


Q ss_pred             -CCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 008276          397 -CPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGS  473 (571)
Q Consensus       397 -~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~  473 (571)
                       .++...+..+...+...|++++|...+++....  .+.+...|..+..+|...|++++|.+.|+++ ...| +..+|..
T Consensus       168 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  245 (323)
T d1fcha_         168 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN  245 (323)
T ss_dssp             TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHH
Confidence             235667888888899999999999999998874  2445678889999999999999999999987 5556 6778999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCchh-----------HHHHHHHHHhcCCHHHHHHH
Q 008276          474 LVAACCLYSNMDIGILAADHIFHLAPNQSGY-----------YVLLSNIYAKAGRWGDVKRV  524 (571)
Q Consensus       474 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~A~~~  524 (571)
                      +..+|.+.|++++|+..|++++++.|++...           |..+..++...|+.+.+...
T Consensus       246 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~  307 (323)
T d1fcha_         246 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA  307 (323)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999999999999999999988876553           45567777777777655443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=8.2e-10  Score=103.54  Aligned_cols=264  Identities=13%  Similarity=0.006  Sum_probs=193.4

Q ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHHhccCCchHHHHHHHHHHHHcCCC-C----ChhHH
Q 008276          267 WNVMIAVYANNSMPAEAVDLYLQMEVHGIEPN----AISVASVLPACGDLSALLLGRKIHRYVERKKLQ-P----NLRLE  337 (571)
Q Consensus       267 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~  337 (571)
                      .......+...|++++|+.++++..+.....+    ...+..+..++...|++++|...++...+.... +    ....+
T Consensus        15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   94 (366)
T d1hz4a_          15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   94 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence            34456678899999999999999887532212    245666777889999999999999988753211 1    12345


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhCCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----CCHHH
Q 008276          338 NALVDMYAKCGSLTEARTVFDQMRC-------Q----DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLC----PDSIA  402 (571)
Q Consensus       338 ~~l~~~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----p~~~~  402 (571)
                      ..+...+...|++..+...+.....       +    ....+..+...+...|+++.+...+.........    .....
T Consensus        95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  174 (366)
T d1hz4a_          95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  174 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence            5667788899999999888876532       1    1234666778889999999999999988763221    22345


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-----CHHHH
Q 008276          403 FVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR-----IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-----NERIW  471 (571)
Q Consensus       403 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~  471 (571)
                      +......+...+++..+...+...........+     ...+..+...+...|++++|...+++. ...|     ....+
T Consensus       175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  254 (366)
T d1hz4a_         175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  254 (366)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence            666667778889999999888776553222221     234566777888999999999999987 2222     23456


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhh------CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          472 GSLVAACCLYSNMDIGILAADHIFHL------APNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       472 ~~l~~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      ..+..++...|++++|...+++++..      .|....++..++.+|...|++++|.+.+++..+
T Consensus       255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            66788899999999999999998753      255567889999999999999999999988754

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=5.6e-11  Score=110.79  Aligned_cols=233  Identities=6%  Similarity=-0.077  Sum_probs=173.6

Q ss_pred             HHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC--CchHHHHHHHHHHHHcCCCCChhHHH-HHHHHHHhcCC
Q 008276          273 VYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDL--SALLLGRKIHRYVERKKLQPNLRLEN-ALVDMYAKCGS  349 (571)
Q Consensus       273 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~  349 (571)
                      .+...|++++|+.++++..+.. +-+...+..+..++...  ++++++...+..+.+.. +++...+. .....+...+.
T Consensus        82 ~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~  159 (334)
T d1dcea1          82 PEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVA  159 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccc
Confidence            3455667889999999988754 33555666555555444  46899999999999876 34455543 45567778899


Q ss_pred             HHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q 008276          350 LTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIM  426 (571)
Q Consensus       350 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~  426 (571)
                      ++.|...++.+.+   .+...|+.+...+.+.|++++|...+++..+  +.|+..   .+...+...+..+++...+...
T Consensus       160 ~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~  234 (334)
T d1dcea1         160 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRW  234 (334)
T ss_dssp             HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHH
Confidence            9999999999886   3567899999999999999988777665555  223222   2223344556667788888777


Q ss_pred             HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 008276          427 TEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGY  504 (571)
Q Consensus       427 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  504 (571)
                      ...  .+++...+..++..+...|+.++|...+.+. ...| +..+|..+...+...|++++|+..++++++++|.+...
T Consensus       235 l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y  312 (334)
T d1dcea1         235 LLG--RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY  312 (334)
T ss_dssp             HHS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHh--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHH
Confidence            663  3444555666777888889999999999877 5566 56678888899999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 008276          505 YVLLSNIYAK  514 (571)
Q Consensus       505 ~~~l~~~~~~  514 (571)
                      |..+...+.-
T Consensus       313 ~~~L~~~~~~  322 (334)
T d1dcea1         313 LDDLRSKFLL  322 (334)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhH
Confidence            9988777664

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=9.8e-09  Score=95.95  Aligned_cols=294  Identities=11%  Similarity=-0.051  Sum_probs=182.6

Q ss_pred             HHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCch
Q 008276          202 MVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPA  281 (571)
Q Consensus       202 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  281 (571)
                      ....+...|++++|++++++..+..  |+.....                           ...++..+..+|...|+++
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~---------------------------~~~a~~~lg~~~~~~g~~~   68 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEEL--PPGWFYS---------------------------RIVATSVLGEVLHCKGELT   68 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHH---------------------------HHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHH---------------------------HHHHHHHHHHHHHHCCCHH
Confidence            3455667777777777777766532  2210000                           0124555666777777777


Q ss_pred             HHHHHHHHHHHCCC-CCC----HHHHHHHHHHhccCCchHHHHHHHHHHHHc----CCCCC---hhHHHHHHHHHHhcCC
Q 008276          282 EAVDLYLQMEVHGI-EPN----AISVASVLPACGDLSALLLGRKIHRYVERK----KLQPN---LRLENALVDMYAKCGS  349 (571)
Q Consensus       282 ~A~~~~~~m~~~g~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~  349 (571)
                      +|...|++..+... .++    ...+..+...+...|++..+...+......    .....   ...+..+...+...|+
T Consensus        69 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  148 (366)
T d1hz4a_          69 RSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR  148 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcc
Confidence            77777776654210 111    233444555666777777777777665531    11111   1234456667778888


Q ss_pred             HHHHHHHHhhCCC--------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHhhcCCC
Q 008276          350 LTEARTVFDQMRC--------QDVVSWTSMISAYGMSGQGYDAVALFSKMLMS--GLCPD----SIAFVSVLSACSHAGL  415 (571)
Q Consensus       350 ~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~----~~~~~~l~~~~~~~~~  415 (571)
                      ++.+...+.....        .....+..+...+...+++..+...+.+....  .....    ...+..+...+...|+
T Consensus       149 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (366)
T d1hz4a_         149 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD  228 (366)
T ss_dssp             HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhccc
Confidence            8888877766542        12334555666777888888888887765542  11111    1245556667778899


Q ss_pred             HHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHH
Q 008276          416 LEEGRYYFKIMTEQYKLVP--RIEHFACLVDLLGRAGKVEEAYDLIKQM-------PMEP-NERIWGSLVAACCLYSNMD  485 (571)
Q Consensus       416 ~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~  485 (571)
                      ++.|...++.........+  ....+..+..++...|++++|...++++       +..| ...++..+...+...|+++
T Consensus       229 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  308 (366)
T d1hz4a_         229 KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS  308 (366)
T ss_dssp             HHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHH
Confidence            9999998888765311111  2245666788889999999998888765       3334 3456777888899999999


Q ss_pred             HHHHHHHHHHhhCCC---------CchhHHHHHHHHHhcCCHHHHHHH
Q 008276          486 IGILAADHIFHLAPN---------QSGYYVLLSNIYAKAGRWGDVKRV  524 (571)
Q Consensus       486 ~A~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~A~~~  524 (571)
                      +|...+++++++.+.         .......+...+...++.+++.+.
T Consensus       309 ~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         309 DAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            999999998876532         122344555666777877777643

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3e-10  Score=104.22  Aligned_cols=224  Identities=11%  Similarity=0.050  Sum_probs=171.1

Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhhCCC---CChhHHHHHHHHH
Q 008276          300 ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCG-SLTEARTVFDQMRC---QDVVSWTSMISAY  375 (571)
Q Consensus       300 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~li~~~  375 (571)
                      ..++.+...+.+.+.+++|...++.+++.+ +-+...|+....++...| ++++|...++...+   .+..+|..+...+
T Consensus        44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence            556666667788889999999999999986 556677888888887766 58999999988764   4677899999999


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---
Q 008276          376 GMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK---  451 (571)
Q Consensus       376 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---  451 (571)
                      .+.|++++|++.++++.+  +.| +...|..+...+...|++++|+..++.+.+.  .+.+...|+.+..++.+.+.   
T Consensus       123 ~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccch
Confidence            999999999999999998  445 5668888999999999999999999999874  24456777777777766665   


Q ss_pred             ---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc--hhHHHHHHHHHhc--CCHHHHH
Q 008276          452 ---VEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS--GYYVLLSNIYAKA--GRWGDVK  522 (571)
Q Consensus       452 ---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~--g~~~~A~  522 (571)
                         +++|++.+.++ ...| +...|..+...+. ....+++...++.+.++.|...  ..+..++.+|...  +..+.+.
T Consensus       199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~  277 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE  277 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred             hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence               57788887776 4456 6777777766554 4456788888998888887543  4455667776543  6667777


Q ss_pred             HHHHHHH
Q 008276          523 RVRKFMN  529 (571)
Q Consensus       523 ~~~~~m~  529 (571)
                      ..+++..
T Consensus       278 ~~~~ka~  284 (315)
T d2h6fa1         278 DILNKAL  284 (315)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=6.5e-10  Score=99.19  Aligned_cols=221  Identities=10%  Similarity=-0.100  Sum_probs=128.7

Q ss_pred             CchHHHHHHHHHHHCCCCC---CHHHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 008276          279 MPAEAVDLYLQMEVHGIEP---NAISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEART  355 (571)
Q Consensus       279 ~~~~A~~~~~~m~~~g~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  355 (571)
                      +.+.++.-+++........   ...++..+..++.+.|++++|...|+..++.. +.+..++..+..+|.+.|++++|..
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence            3445555556655432111   12345555666777777777777777777765 4556677777777888888888888


Q ss_pred             HHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 008276          356 VFDQMRC--Q-DVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYK  431 (571)
Q Consensus       356 ~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  431 (571)
                      .|+++.+  | +..++..+...+...|++++|...|++..+.  .| +......+..++.+.+..+....+.......  
T Consensus        93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  168 (259)
T d1xnfa_          93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--  168 (259)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--
T ss_pred             hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--
Confidence            8777663  3 4556777778888888888888888888774  34 3333333334444445544444444444432  


Q ss_pred             CCCCHHHHHHHHHHHHhcCC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 008276          432 LVPRIEHFACLVDLLGRAGK----VEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYY  505 (571)
Q Consensus       432 ~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  505 (571)
                       .+....+. ++..+.....    .+.+...+... ...| ...+|..+...+...|++++|+..|+++++.+|++...|
T Consensus       169 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  246 (259)
T d1xnfa_         169 -DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH  246 (259)
T ss_dssp             -CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred             -chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence             12221222 2222221111    22222222111 1122 234566677888888999999999999888888775444


Q ss_pred             H
Q 008276          506 V  506 (571)
Q Consensus       506 ~  506 (571)
                      .
T Consensus       247 ~  247 (259)
T d1xnfa_         247 R  247 (259)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=4.5e-10  Score=100.25  Aligned_cols=215  Identities=13%  Similarity=0.000  Sum_probs=150.8

Q ss_pred             CchHHHHHHHHHHHHcCC-CC--ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHH
Q 008276          313 SALLLGRKIHRYVERKKL-QP--NLRLENALVDMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVA  386 (571)
Q Consensus       313 ~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~  386 (571)
                      .+.+.+...++++..... .+  ...++..+..+|.+.|++++|...|++..+   .++.+|+.+..+|.+.|++++|++
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence            345556666666665322 11  234666778899999999999999998874   467889999999999999999999


Q ss_pred             HHHHHHHCCCCCC-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 008276          387 LFSKMLMSGLCPD-SIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PM  464 (571)
Q Consensus       387 ~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~  464 (571)
                      .|+++.+  +.|+ ..++..+..++...|++++|...|+...+.  .+.+......+...+.+.+..+.+..+.... ..
T Consensus        93 ~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (259)
T d1xnfa_          93 AFDSVLE--LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS  168 (259)
T ss_dssp             HHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred             hhhHHHH--HHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence            9999999  4554 557888999999999999999999999875  2334444444455555666555554444433 11


Q ss_pred             CCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          465 EPNERIWGSLVAACC----LYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       465 ~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      .+....+. ++..+.    ..+..+.+...+.......|....+|..++..|...|++++|...+++.....
T Consensus       169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  239 (259)
T d1xnfa_         169 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN  239 (259)
T ss_dssp             CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            22222222 222222    23334455555555555667777789999999999999999999999988665

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.9e-09  Score=97.54  Aligned_cols=226  Identities=10%  Similarity=-0.008  Sum_probs=168.9

Q ss_pred             hhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC-chHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 008276          264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS-ALLLGRKIHRYVERKKLQPNLRLENALVD  342 (571)
Q Consensus       264 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  342 (571)
                      ..+++.+...+.+.+.+++|+++++++++.. +-+...|+....++...| ++++|...++.+.+.. +-+..+|..+..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~  120 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence            3467778888999999999999999999863 335567777777777776 5899999999999886 567888999999


Q ss_pred             HHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCC---
Q 008276          343 MYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGL---  415 (571)
Q Consensus       343 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~---  415 (571)
                      .+.+.|++++|.+.++.+.+   .+...|..+...+.+.|++++|++.++++++  +.| +...|+.+...+.+.+.   
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~~p~n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HCCccHHHHHHHHHHHHHccccch
Confidence            99999999999999999875   4678999999999999999999999999999  455 45577776666555444   


Q ss_pred             ---HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh--cCCHHH
Q 008276          416 ---LEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM----PMEPNERIWGSLVAACCL--YSNMDI  486 (571)
Q Consensus       416 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~--~g~~~~  486 (571)
                         +++|...+..+.+.  .+.+...|..+...+... ..+++.+.++..    +...+...+..++..|..  .++.+.
T Consensus       199 ~~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~  275 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN  275 (315)
T ss_dssp             HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred             hhhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHH
Confidence               67899999888774  244667777776665544 356666666554    222345556666665543  244445


Q ss_pred             HHHHHHHHHh
Q 008276          487 GILAADHIFH  496 (571)
Q Consensus       487 A~~~~~~~~~  496 (571)
                      +...++++.+
T Consensus       276 ~~~~~~ka~~  285 (315)
T d2h6fa1         276 KEDILNKALE  285 (315)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=9.8e-09  Score=93.85  Aligned_cols=186  Identities=11%  Similarity=0.080  Sum_probs=127.1

Q ss_pred             chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C-hhHHHHHHHHHHhcCChHHHHHHHH
Q 008276          314 ALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRC--Q-D-VVSWTSMISAYGMSGQGYDAVALFS  389 (571)
Q Consensus       314 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~-~~~~~~li~~~~~~~~~~~a~~~~~  389 (571)
                      ..+.+..+|+...+...+.+...+...+..+.+.|+.+.|..+|+.+.+  | + ...|...+..+.+.|+.+.|.++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            3567777787777655455566677777777788888888888877653  2 2 3357777777778888888888888


Q ss_pred             HHHHCCCCCCHHHHHHHHHH-hhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----CC
Q 008276          390 KMLMSGLCPDSIAFVSVLSA-CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM----PM  464 (571)
Q Consensus       390 ~m~~~g~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~  464 (571)
                      ++++.+. .+...|...... +...|+.+.|..+|+.+.+.  .+.+...|...+..+.+.|+++.|+.+|++.    +.
T Consensus       159 ~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         159 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            8777532 233334333322 23457788888888888764  3445667777788888888888888888775    23


Q ss_pred             CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 008276          465 EP--NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQS  502 (571)
Q Consensus       465 ~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  502 (571)
                      .|  ....|...+..-...|+.+.+..+++++.+..|...
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~  275 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence            33  244677777776777888888888888877776543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=1e-08  Score=93.70  Aligned_cols=181  Identities=8%  Similarity=0.065  Sum_probs=143.7

Q ss_pred             CHHHHHHHHhhCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHH
Q 008276          349 SLTEARTVFDQMRC----QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFK  424 (571)
Q Consensus       349 ~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~  424 (571)
                      ..++|..+|+...+    .+...|...+..+...|+++.|..+|+++++.........|...+..+.+.|+.+.|.++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            45778888877543    35567888889999999999999999999985333334578889999999999999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 008276          425 IMTEQYKLVPRIEHFACLVDL-LGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ  501 (571)
Q Consensus       425 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  501 (571)
                      ++.+.  .+.+...|...+.. +...|+.+.|..+|+.+ ...| +...|..++..+...|+.+.|..+|+++++..|.+
T Consensus       159 ~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         159 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            99864  33344555444443 33468999999999988 3233 67889999999999999999999999999987655


Q ss_pred             c----hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008276          502 S----GYYVLLSNIYAKAGRWGDVKRVRKFMNSK  531 (571)
Q Consensus       502 ~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  531 (571)
                      +    ..|...+..-...|+.+.+..+.+++.+.
T Consensus       237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4    37888888878899999999999998764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.91  E-value=1.5e-09  Score=100.91  Aligned_cols=252  Identities=6%  Similarity=-0.096  Sum_probs=180.5

Q ss_pred             HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHH-HHH---HHHHhc-------cCCchHHHHHHHHHHHHcCCCCChhHHH
Q 008276          270 MIAVYANNSMPAEAVDLYLQMEVHGIEPNAIS-VAS---VLPACG-------DLSALLLGRKIHRYVERKKLQPNLRLEN  338 (571)
Q Consensus       270 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~---ll~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~  338 (571)
                      ++......+..++|++++.+..+.  .|+..+ |+.   ++....       ..|.++++..+++.+.+.+ +.+...+.
T Consensus        35 ~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~  111 (334)
T d1dcea1          35 VFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH  111 (334)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHH
Confidence            333333344558999999999874  566543 322   222222       2345788888999888875 55666777


Q ss_pred             HHHHHHHhcC--CHHHHHHHHhhCCC---CChhHHH-HHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhh
Q 008276          339 ALVDMYAKCG--SLTEARTVFDQMRC---QDVVSWT-SMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACS  411 (571)
Q Consensus       339 ~l~~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~  411 (571)
                      .+..++...+  ++++|...++.+.+   ++...+. .....+...+.+++|+..++++.+.  .| +...|..+...+.
T Consensus       112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--~p~~~~a~~~l~~~~~  189 (334)
T d1dcea1         112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLP  189 (334)
T ss_dssp             HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHH
T ss_pred             HhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence            6766666655  58899998888754   3455554 4446777789999999999998884  44 5668888888888


Q ss_pred             cCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008276          412 HAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM--PMEPNERIWGSLVAACCLYSNMDIGIL  489 (571)
Q Consensus       412 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~  489 (571)
                      ..|++++|...++...+.   .|+   ...+...+...+..+++...+...  ...++...+..++..+...|+.++|..
T Consensus       190 ~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~  263 (334)
T d1dcea1         190 QLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCK  263 (334)
T ss_dssp             HHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHH
Confidence            889888877666555432   111   112334455567777777776665  223345566667777888899999999


Q ss_pred             HHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          490 AADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       490 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      .+.+..+.+|.+..++..++.+|...|++++|.+++++..+.+
T Consensus       264 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld  306 (334)
T d1dcea1         264 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD  306 (334)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999999987654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=1.6e-08  Score=85.99  Aligned_cols=120  Identities=8%  Similarity=-0.082  Sum_probs=85.2

Q ss_pred             CCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 008276          398 PDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLV  475 (571)
Q Consensus       398 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~  475 (571)
                      |+...+......+.+.|++++|+..|+++.+.  .+.+...|..+..+|.+.|++++|+..|+++ .+.| +..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence            56666777777788888888888888877764  2445677777888888888888888888776 6666 566777777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHH
Q 008276          476 AACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWG  519 (571)
Q Consensus       476 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  519 (571)
                      .+|...|++++|+..|++++++.|++...+...+..+...++..
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~  123 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK  123 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHh
Confidence            88888888888888888888777665555554555444443333

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=4.3e-08  Score=74.59  Aligned_cols=101  Identities=10%  Similarity=0.064  Sum_probs=51.3

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 008276          408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMD  485 (571)
Q Consensus       408 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~  485 (571)
                      ..+...|++++|+..|+.+.+.  .+.+...|..+..+|...|++++|+..+.+. .+.| +...|..+..++...|+++
T Consensus        11 ~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~   88 (117)
T d1elwa_          11 NKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE   88 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence            3344555555555555555442  2333444555555555555555555555544 2222 4445555555555555555


Q ss_pred             HHHHHHHHHHhhCCCCchhHHHHHH
Q 008276          486 IGILAADHIFHLAPNQSGYYVLLSN  510 (571)
Q Consensus       486 ~A~~~~~~~~~~~p~~~~~~~~l~~  510 (571)
                      +|+..|+++++++|+++.++..+..
T Consensus        89 ~A~~~~~~a~~~~p~~~~~~~~l~~  113 (117)
T d1elwa_          89 EAKRTYEEGLKHEANNPQLKEGLQN  113 (117)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            5555555555555555555554443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=3.7e-08  Score=74.97  Aligned_cols=93  Identities=13%  Similarity=0.114  Sum_probs=85.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 008276          440 ACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGR  517 (571)
Q Consensus       440 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  517 (571)
                      ..-...+.+.|++++|+..|+++ ...| +...|..+..++...|++++|+..++++++++|+++..|..++.++...|+
T Consensus         7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           7 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence            34567788999999999999998 5556 788899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCC
Q 008276          518 WGDVKRVRKFMNSKG  532 (571)
Q Consensus       518 ~~~A~~~~~~m~~~~  532 (571)
                      +++|+..+++..+..
T Consensus        87 ~~~A~~~~~~a~~~~  101 (117)
T d1elwa_          87 FEEAKRTYEEGLKHE  101 (117)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999999988654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.72  E-value=3.1e-08  Score=74.71  Aligned_cols=89  Identities=16%  Similarity=0.071  Sum_probs=81.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCH
Q 008276          441 CLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRW  518 (571)
Q Consensus       441 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  518 (571)
                      .+...+.+.|++++|...|+++ ...| +..+|..+..++.+.|++++|+..++++++++|++..+|..++.+|...|++
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence            4677788999999999999988 5556 6889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 008276          519 GDVKRVRKFMN  529 (571)
Q Consensus       519 ~~A~~~~~~m~  529 (571)
                      ++|.+.+++.+
T Consensus       101 ~~A~~~l~~~l  111 (112)
T d1hxia_         101 NAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998763

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.3e-07  Score=76.60  Aligned_cols=119  Identities=7%  Similarity=-0.043  Sum_probs=97.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 008276          404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLY  481 (571)
Q Consensus       404 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~  481 (571)
                      ......+.+.|++++|...|+++.+.  .+.+...|..+..+|...|++++|...|+++ ...| +..+|..++.++...
T Consensus        14 ~~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          14 KTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence            33455677899999999999999875  3456788889999999999999999999987 5556 667899999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH--hcCCHHHHHHH
Q 008276          482 SNMDIGILAADHIFHLAPNQSGYYVLLSNIYA--KAGRWGDVKRV  524 (571)
Q Consensus       482 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~  524 (571)
                      |++++|+..++++.+++|+++.++..+..+..  ..+.+++|...
T Consensus        92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          92 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999998888776643  44556666654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=4.2e-07  Score=75.89  Aligned_cols=139  Identities=8%  Similarity=-0.082  Sum_probs=92.6

Q ss_pred             HHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHH
Q 008276          342 DMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGR  420 (571)
Q Consensus       342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~  420 (571)
                      ..+...|+++.|.+.|+.+..++..+|..+...|...|++++|++.|++.++  +.| +...|..+..++.+.|++++|.
T Consensus        13 ~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A~   90 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLAI   90 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHHH
Confidence            3456778888888888888778888888888888888888888888888887  444 3457777888888888888888


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 008276          421 YYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEPN-ERIWGSLVAACCLYSNMDIGILAADHIFHLAP  499 (571)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  499 (571)
                      ..|++....  .+.+...      .+...|           ...+++ ..++..+..++.+.|++++|.+.++++.++.|
T Consensus        91 ~~~~kAl~~--~~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~  151 (192)
T d1hh8a_          91 KDLKEALIQ--LRGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  151 (192)
T ss_dssp             HHHHHHHHT--TTTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHh--CccCchH------HHHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            888877652  1111100      000000           001111 23444566677778888888888888887776


Q ss_pred             CC
Q 008276          500 NQ  501 (571)
Q Consensus       500 ~~  501 (571)
                      ..
T Consensus       152 ~~  153 (192)
T d1hh8a_         152 EP  153 (192)
T ss_dssp             SG
T ss_pred             Cc
Confidence            54

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.68  E-value=5e-08  Score=82.75  Aligned_cols=95  Identities=9%  Similarity=-0.001  Sum_probs=74.8

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC-CHHHHH
Q 008276          363 QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVP-RIEHFA  440 (571)
Q Consensus       363 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~  440 (571)
                      |+...+......+.+.|++++|+..|++.++.  .| +...|..+..+|.+.|++++|+..|+.+.+   +.| +...|.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~   76 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHF   76 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHH
Confidence            55566667778888888888888888888874  34 555788888888888888888888888874   334 457788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC
Q 008276          441 CLVDLLGRAGKVEEAYDLIKQM  462 (571)
Q Consensus       441 ~l~~~~~~~g~~~~A~~~~~~~  462 (571)
                      .+..+|...|++++|+..|+++
T Consensus        77 ~lg~~~~~l~~~~~A~~~~~~a   98 (201)
T d2c2la1          77 FLGQCQLEMESYDEAIANLQRA   98 (201)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHH
Confidence            8888888888888888888876

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=4.3e-07  Score=75.85  Aligned_cols=122  Identities=9%  Similarity=0.001  Sum_probs=88.2

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 008276          408 SACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMD  485 (571)
Q Consensus       408 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~  485 (571)
                      ..+...|+++.|++.|..+     .+|+..+|..+..+|...|++++|++.|++. .+.| +...|..+..++.+.|+++
T Consensus        13 ~~~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~   87 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD   87 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHH
Confidence            3445667777777777654     2355666777777777777777777777776 4445 5667777777777888888


Q ss_pred             HHHHHHHHHHhhCCCC----------------chhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008276          486 IGILAADHIFHLAPNQ----------------SGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK  534 (571)
Q Consensus       486 ~A~~~~~~~~~~~p~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  534 (571)
                      +|+..|++++...|.+                ..++..++.++.+.|++++|.+.++...+....
T Consensus        88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            8888888877654433                245778899999999999999999988765433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.63  E-value=2.2e-07  Score=83.77  Aligned_cols=188  Identities=11%  Similarity=0.033  Sum_probs=113.6

Q ss_pred             HHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHH
Q 008276          341 VDMYAKCGSLTEARTVFDQMRC-----QD----VVSWTSMISAYGMSGQGYDAVALFSKMLMS----GLCP-DSIAFVSV  406 (571)
Q Consensus       341 ~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l  406 (571)
                      ...|...+++++|.+.|.+..+     .+    ..+|..+..+|.+.|++++|++.+++..+.    |... ...++..+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  123 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence            4556667777777777665542     12    246777778888888888888888776542    1110 12345555


Q ss_pred             HHHhh-cCCCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-------CH-HHHH
Q 008276          407 LSACS-HAGLLEEGRYYFKIMTEQYKLVPR----IEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-------NE-RIWG  472 (571)
Q Consensus       407 ~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------~~-~~~~  472 (571)
                      ...|. ..|++++|...+++..+......+    ..++..++..+...|++++|.+.|+++ ...|       .. ..+.
T Consensus       124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (290)
T d1qqea_         124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL  203 (290)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence            55554 358888888888776542111111    245677788888888888888888876 1111       11 1233


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-----hHHHHHHHHHh--cCCHHHHHHHHHHH
Q 008276          473 SLVAACCLYSNMDIGILAADHIFHLAPNQSG-----YYVLLSNIYAK--AGRWGDVKRVRKFM  528 (571)
Q Consensus       473 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~m  528 (571)
                      ..+..+...|+++.|...++++.+.+|....     ....++.++..  .+++++|+..|+++
T Consensus       204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~  266 (290)
T d1qqea_         204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            4444566788888888888888887764332     23455555554  35677887777544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.7e-07  Score=75.84  Aligned_cols=94  Identities=14%  Similarity=0.070  Sum_probs=85.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 008276          439 FACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAG  516 (571)
Q Consensus       439 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  516 (571)
                      +......|.+.|++++|+..|+++ ...| +...|..+...|...|++++|+..|+++++++|.+..+|..++.++...|
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence            344566788999999999999988 5556 78889999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhCC
Q 008276          517 RWGDVKRVRKFMNSKG  532 (571)
Q Consensus       517 ~~~~A~~~~~~m~~~~  532 (571)
                      ++++|...+++.....
T Consensus        93 ~~~eA~~~~~~a~~~~  108 (159)
T d1a17a_          93 KFRAALRDYETVVKVK  108 (159)
T ss_dssp             CHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHcC
Confidence            9999999999988654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=8.3e-07  Score=72.40  Aligned_cols=133  Identities=12%  Similarity=0.058  Sum_probs=95.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 008276          368 WTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLG  447 (571)
Q Consensus       368 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  447 (571)
                      +......+.+.|++++|+..|++.++.  .|...            +....-......+        ...+|+.+..+|.
T Consensus        16 l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~------------~~~~~~~~~~~~~--------~~~~~~nla~~y~   73 (170)
T d1p5qa1          16 VKERGTVYFKEGKYKQALLQYKKIVSW--LEYES------------SFSNEEAQKAQAL--------RLASHLNLAMCHL   73 (170)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCC------------CCCSHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhcc------------ccchHHHhhhchh--------HHHHHHHHHHHHH
Confidence            444556677777777777777776652  11100            0000001111111        1235677888999


Q ss_pred             hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHH
Q 008276          448 RAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVK  522 (571)
Q Consensus       448 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~  522 (571)
                      +.|++++|+..+++. .+.| ++.+|..+..++...|++++|+..|+++++++|+++.+...+..+..+.+...+..
T Consensus        74 k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1          74 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999887 5566 78899999999999999999999999999999999999999988877766555543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2.7e-07  Score=70.21  Aligned_cols=107  Identities=12%  Similarity=-0.010  Sum_probs=82.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCCCH---HHHHHHHH
Q 008276          404 VSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGK---VEEAYDLIKQM-PMEPNE---RIWGSLVA  476 (571)
Q Consensus       404 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~~---~~~~~l~~  476 (571)
                      ..++..+...+++++|.+.|++....  -+.++.++..+..++.+.++   +++|+++++++ ...|++   .+|..+..
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~   80 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   80 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            34667777888899999999988874  34566778888888877554   45688888886 444433   36777888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 008276          477 ACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY  512 (571)
Q Consensus       477 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  512 (571)
                      +|.+.|++++|+..|+++++++|++..+......+.
T Consensus        81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID  116 (122)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            999999999999999999999999988776665443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.52  E-value=1.6e-06  Score=77.93  Aligned_cols=173  Identities=10%  Similarity=-0.022  Sum_probs=129.7

Q ss_pred             CHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhhcCCCHHHHHHHH
Q 008276          349 SLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMS----GLCPD-SIAFVSVLSACSHAGLLEEGRYYF  423 (571)
Q Consensus       349 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~  423 (571)
                      ++++|.++|.           .....|...|++++|.+.|.++.+.    +-.++ ..+|..+..+|.+.|++++|...+
T Consensus        32 ~~~~Aa~~y~-----------~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~  100 (290)
T d1qqea_          32 KFEEAADLCV-----------QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL  100 (290)
T ss_dssp             HHHHHHHHHH-----------HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHH-----------HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence            4566666644           4577889999999999999988762    22222 247888999999999999999999


Q ss_pred             HHHHHhcCCCCC----HHHHHHHHHHHHh-cCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 008276          424 KIMTEQYKLVPR----IEHFACLVDLLGR-AGKVEEAYDLIKQM-------PMEP-NERIWGSLVAACCLYSNMDIGILA  490 (571)
Q Consensus       424 ~~~~~~~~~~~~----~~~~~~l~~~~~~-~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~  490 (571)
                      +...+...-..+    ...+..+...|.. .|++++|.+.+++.       +..+ -..++..+...+...|++++|+..
T Consensus       101 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~  180 (290)
T d1qqea_         101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI  180 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHH
Confidence            987654222222    3456667777754 69999999999876       1111 134577888899999999999999


Q ss_pred             HHHHHhhCCCCch-------hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          491 ADHIFHLAPNQSG-------YYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       491 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      |+++....|.+..       .+...+.++...|+++.|...+++..+..
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~  229 (290)
T d1qqea_         181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED  229 (290)
T ss_dssp             HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred             HHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            9999998866542       35667777888999999999999887654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.36  E-value=6.3e-06  Score=66.86  Aligned_cols=93  Identities=13%  Similarity=0.069  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 008276          437 EHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK  514 (571)
Q Consensus       437 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  514 (571)
                      ..|..+..+|.+.|++++|+..++++ ...| +..+|..+..++...|++++|+..|+++++++|+++.+...+..+...
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  144 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK  144 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            35667888899999999999999987 4455 788899999999999999999999999999999999999998888777


Q ss_pred             cCCHHH-HHHHHHHHH
Q 008276          515 AGRWGD-VKRVRKFMN  529 (571)
Q Consensus       515 ~g~~~~-A~~~~~~m~  529 (571)
                      .+...+ ..+.+..|-
T Consensus       145 ~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1         145 AKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHH
Confidence            665543 445555554

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=3.3e-06  Score=68.67  Aligned_cols=64  Identities=6%  Similarity=-0.090  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          469 RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       469 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      .+|..+..+|.+.|++++|+..++++++++|+++.+|..++.+|...|++++|+..|++..+..
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  126 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY  126 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            3567788889999999999999999999999999999999999999999999999999998754

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.33  E-value=3.1e-06  Score=68.86  Aligned_cols=87  Identities=11%  Similarity=0.047  Sum_probs=72.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 008276          435 RIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIY  512 (571)
Q Consensus       435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  512 (571)
                      ....+..+..++.+.|++++|+..++++ .+.| +..+|..+..++...|++++|+..|+++++++|++..++..+..+.
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~  155 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK  155 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3456777888999999999999999887 6666 6778999999999999999999999999999999999888888776


Q ss_pred             HhcCCHHHH
Q 008276          513 AKAGRWGDV  521 (571)
Q Consensus       513 ~~~g~~~~A  521 (571)
                      .+.....++
T Consensus       156 ~~l~~~~~~  164 (169)
T d1ihga1         156 QKIKAQKDK  164 (169)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            655544443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.30  E-value=3.8e-06  Score=66.97  Aligned_cols=77  Identities=12%  Similarity=0.017  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 008276          437 EHFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYA  513 (571)
Q Consensus       437 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  513 (571)
                      .+|..+..+|.+.|++++|++.++++ .+.| +..+|..+..++...|++++|+..|+++++++|++..+...+..+..
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            35667788888888888888888876 4455 67788888888888888888888888888888888887777655543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.29  E-value=0.00013  Score=63.84  Aligned_cols=230  Identities=10%  Similarity=-0.064  Sum_probs=128.9

Q ss_pred             ChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc----CCchHHHHHHHHHHHHcCCCCChhHHH
Q 008276          263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGD----LSALLLGRKIHRYVERKKLQPNLRLEN  338 (571)
Q Consensus       263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  338 (571)
                      |+..+..|...+.+.+++++|+++|++..+.|   +...+..+...|..    ..+...+...+....+.+.   .....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a~~   74 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGCH   74 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cchhh
Confidence            45667777777888888888888888887765   33344444444432    3455555555555554431   11111


Q ss_pred             HHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh----hcCC
Q 008276          339 ALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSAC----SHAG  414 (571)
Q Consensus       339 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~----~~~~  414 (571)
                      .+...+..                           ......+.+.|...++...+.|....   ...+...+    ....
T Consensus        75 ~l~~~~~~---------------------------~~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~~~~~  124 (265)
T d1ouva_          75 LLGNLYYS---------------------------GQGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYHDGKVVTR  124 (265)
T ss_dssp             HHHHHHHH---------------------------TSSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCSSSCC
T ss_pred             cccccccc---------------------------ccccchhhHHHHHHHhhhhhhhhhhH---HHhhcccccCCCcccc
Confidence            22111111                           00113455566666666665442211   11111111    2234


Q ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 008276          415 LLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR----AGKVEEAYDLIKQMPMEPNERIWGSLVAACCL----YSNMDI  486 (571)
Q Consensus       415 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~  486 (571)
                      ....+...+.....    ..+...+..+...|..    ..+...+...++......+......+...+..    ..++++
T Consensus       125 ~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~  200 (265)
T d1ouva_         125 DFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKE  200 (265)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred             hhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhh
Confidence            45555555555443    2344555556666654    34555666666655223355555555555544    568888


Q ss_pred             HHHHHHHHHhhCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC
Q 008276          487 GILAADHIFHLAPNQSGYYVLLSNIYAK----AGRWGDVKRVRKFMNSKGIK  534 (571)
Q Consensus       487 A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~  534 (571)
                      |+..|+++.+.+  ++..+..|+..|.+    ..+.++|.++|++..+.|..
T Consensus       201 A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         201 ALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             HHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             hhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence            888888887775  46678888888876    34788888888888777643

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.8e-06  Score=66.43  Aligned_cols=92  Identities=11%  Similarity=0.065  Sum_probs=69.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-------hHHHHH
Q 008276          439 FACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSG-------YYVLLS  509 (571)
Q Consensus       439 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~l~  509 (571)
                      +..+...+.+.|++++|++.|.+. ...| +...|..+..+|.+.|++++|+..++++++++|+++.       +|..++
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            345667777888888888888776 4444 5777888888888888888888888888888876655       444566


Q ss_pred             HHHHhcCCHHHHHHHHHHHHh
Q 008276          510 NIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       510 ~~~~~~g~~~~A~~~~~~m~~  530 (571)
                      ..+...+++++|++.+++...
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHh
Confidence            667777788888888877654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1e-06  Score=66.91  Aligned_cols=93  Identities=5%  Similarity=0.013  Sum_probs=78.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCC--chhHHHHHHHH
Q 008276          440 ACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYS---NMDIGILAADHIFHLAPNQ--SGYYVLLSNIY  512 (571)
Q Consensus       440 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~  512 (571)
                      ..++..+...+++++|.+.|++. ...| ++.++..+..++.+.+   ++++|+.+++++++.+|++  ..++..++.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            45778888999999999999988 4455 7788889999988654   5567999999999988654  44889999999


Q ss_pred             HhcCCHHHHHHHHHHHHhCC
Q 008276          513 AKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       513 ~~~g~~~~A~~~~~~m~~~~  532 (571)
                      .+.|++++|+++|+++.+..
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~  102 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTE  102 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhhhHHHHHHHHHHHHhC
Confidence            99999999999999998754

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.19  E-value=1.3e-05  Score=63.72  Aligned_cols=64  Identities=13%  Similarity=-0.044  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          469 RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       469 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      .+|..+..+|.+.|++++|+..++++++++|.+..+|..++.+|...|++++|+..|++..+-.
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~  131 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN  131 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            4677788899999999999999999999999999999999999999999999999999987654

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.17  E-value=0.0019  Score=57.67  Aligned_cols=284  Identities=12%  Similarity=0.083  Sum_probs=135.4

Q ss_pred             ChhHHHHHHHHhhcCCChHHHHHHHcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHhhc
Q 008276           63 NPSIGLKLMRTYGACGQMVDTRHVFDEITNKNVVFFNVLIRSYVNNYLYYDALHVYKNMSVHGFDPDCYTYPCVLKACSG  142 (571)
Q Consensus        63 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  142 (571)
                      +..-...++..|-+.|.++.|..+|..+..     |..++..+.+.++++.|.+++.+..      +..+|..+...|.+
T Consensus        13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~   81 (336)
T d1b89a_          13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVD   81 (336)
T ss_dssp             ----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHh
Confidence            333344555666666777777777665443     6666666677777777666665431      44566666666665


Q ss_pred             CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHccCCC---CCchhHHHHHHHHHhCCCchHHHHHH
Q 008276          143 SNSLLVGLQIHCSVVKVGLDYNLFNGNGLVAMYGKCGCLKEARRVLNDMPS---KDVVTWNSMVAGYAQNGRFDEALDVC  219 (571)
Q Consensus       143 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~  219 (571)
                      ......+     .+...+...+......++..|-..|.+++...+++....   .+...++.++..|++.+. ++..+.+
T Consensus        82 ~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~-~kl~e~l  155 (336)
T d1b89a_          82 GKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-QKMREHL  155 (336)
T ss_dssp             TTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-HHHHHHH
T ss_pred             CcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh-HHHHHHH
Confidence            5544332     111222233444445667777777777777777775432   355566777777776542 3333333


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHhcCCCCccHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH
Q 008276          220 REMESLRIKPDADTMASLLPSVTNTSPENVLSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNA  299 (571)
Q Consensus       220 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~  299 (571)
                      ...   ...-|   ...++..|-..                    ..|..++..|.+.|+++.|..++-   ++  .++.
T Consensus       156 ~~~---s~~y~---~~k~~~~c~~~--------------------~l~~elv~Ly~~~~~~~~A~~~~i---~~--~~~~  204 (336)
T d1b89a_         156 ELF---WSRVN---IPKVLRAAEQA--------------------HLWAELVFLYDKYEEYDNAIITMM---NH--PTDA  204 (336)
T ss_dssp             HHH---STTSC---HHHHHHHHHTT--------------------TCHHHHHHHHHHTTCHHHHHHHHH---HS--TTTT
T ss_pred             Hhc---cccCC---HHHHHHHHHHc--------------------CChHHHHHHHHhcCCHHHHHHHHH---Hc--chhh
Confidence            222   11112   11122222222                    225566777777777777766542   21  2222


Q ss_pred             HHHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcC
Q 008276          300 ISVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALVDMYAKCGSLTEARTVFDQMRCQDVVSWTSMISAYGMSG  379 (571)
Q Consensus       300 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~  379 (571)
                      .-....+..+.+..+.+...++.....+.  .|  ...+.++......-+..+..+.++                  +.+
T Consensus       205 ~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~------------------k~~  262 (336)
T d1b89a_         205 WKEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFS------------------KVK  262 (336)
T ss_dssp             CCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHH------------------HTT
T ss_pred             hhHHHHHHHHHccCChHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHHH------------------hcC
Confidence            22233344455555555555544444432  12  223444444444444444444433                  344


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHH
Q 008276          380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEG  419 (571)
Q Consensus       380 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a  419 (571)
                      +..-...+++.....|   +....+.+...|...++++.-
T Consensus       263 ~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l  299 (336)
T d1b89a_         263 QLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQAL  299 (336)
T ss_dssp             CTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHH
Confidence            4444444554444433   234555555556666655443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.15  E-value=1.1e-05  Score=65.86  Aligned_cols=121  Identities=12%  Similarity=0.057  Sum_probs=85.3

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008276          405 SVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKV-EEAYDLIKQMPMEPNERIWGSLVAACCLYSN  483 (571)
Q Consensus       405 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~  483 (571)
                      .........|++++|...|......+.-.+-...         ..+.+ .....-++.    .....+..+...+...|+
T Consensus        16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~---------~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~   82 (179)
T d2ff4a2          16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL---------RDFQFVEPFATALVE----DKVLAHTAKAEAEIACGR   82 (179)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG---------TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcccccccC---------cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence            3344567788888888888888764221110000         00110 000111111    123467778889999999


Q ss_pred             HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCCc
Q 008276          484 MDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN-----SKGIKKMPG  538 (571)
Q Consensus       484 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~  538 (571)
                      +++|+..++++++.+|.+...|..++.+|.+.|++++|++.|+++.     +-|+.|.|.
T Consensus        83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~  142 (179)
T d2ff4a2          83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  142 (179)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence            9999999999999999999999999999999999999999999985     458877664

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.14  E-value=6.7e-06  Score=66.82  Aligned_cols=66  Identities=6%  Similarity=-0.084  Sum_probs=60.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          467 NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       467 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      ....|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|+..+++..+..
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~  141 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA  141 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            455677788889999999999999999999999999999999999999999999999999988753

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.11  E-value=0.0018  Score=56.34  Aligned_cols=92  Identities=12%  Similarity=-0.047  Sum_probs=60.9

Q ss_pred             HHHHHHHHhcCCCCccHHHHHHHHhhCC-CCChhhHHHHHHHHHH----cCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008276          233 TMASLLPSVTNTSPENVLSVKEMFLKLD-NKNLVSWNVMIAVYAN----NSMPAEAVDLYLQMEVHGIEPNAISVASVLP  307 (571)
Q Consensus       233 t~~~ll~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~  307 (571)
                      .+..|-..+...++  .++|.+.|++.. ..+..++..|...|..    ..++..|..++......+ .|.  ....+..
T Consensus         4 ~~~~lG~~~~~~~d--~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-~~~--a~~~l~~   78 (265)
T d1ouva_           4 ELVGLGAKSYKEKD--FTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSN--GCHLLGN   78 (265)
T ss_dssp             HHHHHHHHHHHTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHH--HHHHHHH
T ss_pred             HHHHHHHHHHHCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-ccc--hhhcccc
Confidence            34444444444555  888999888875 3567777788888877    568899999999888766 222  2222222


Q ss_pred             H----hccCCchHHHHHHHHHHHHcC
Q 008276          308 A----CGDLSALLLGRKIHRYVERKK  329 (571)
Q Consensus       308 ~----~~~~~~~~~a~~~~~~~~~~~  329 (571)
                      .    .....+.+.+...++...+.|
T Consensus        79 ~~~~~~~~~~~~~~a~~~~~~a~~~g  104 (265)
T d1ouva_          79 LYYSGQGVSQNTNKALQYYSKACDLK  104 (265)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             ccccccccchhhHHHHHHHhhhhhhh
Confidence            2    234567788888888877765

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.11  E-value=0.0019  Score=57.68  Aligned_cols=129  Identities=9%  Similarity=0.031  Sum_probs=54.0

Q ss_pred             HHHHHHHhCCCHHHHHHHHccCCCCCchhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCccH
Q 008276          170 GLVAMYGKCGCLKEARRVLNDMPSKDVVTWNSMVAGYAQNGRFDEALDVCREMESLRIKPDADTMASLLPSVTNTSPENV  249 (571)
Q Consensus       170 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~  249 (571)
                      .+.+.|.+.|.++.|..+|..+.     -|.-++..+.+.++++.|.+++.+.      -+..+|..+...+.....  .
T Consensus        19 ~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e--~   85 (336)
T d1b89a_          19 QVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKE--F   85 (336)
T ss_dssp             ----------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTC--H
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcH--H
Confidence            34444555555555555554332     2444455555555555555555433      122333333333332222  1


Q ss_pred             HHHHHHHhhCCCCChhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC
Q 008276          250 LSVKEMFLKLDNKNLVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLS  313 (571)
Q Consensus       250 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~  313 (571)
                      ..+ .+.......++.....++..|-..|.+++...++...... -..+...++.++..|++.+
T Consensus        86 ~la-~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_          86 RLA-QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             HHH-HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred             HHH-HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence            110 0000111112333445666666667777666666655432 2345555566666665543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=5.3e-07  Score=87.81  Aligned_cols=59  Identities=12%  Similarity=-0.073  Sum_probs=29.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          471 WGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       471 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  529 (571)
                      +..+...+...|++++|+..|+++.+++|++...|..++.++...|+..+|...+.+..
T Consensus       155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral  213 (497)
T d1ya0a1         155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI  213 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            33444444444555555555555555555555555555555555555555554444444

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.05  E-value=3.2e-05  Score=62.53  Aligned_cols=64  Identities=6%  Similarity=-0.058  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          469 RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       469 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      .+|..+..+|.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...++++.+-.
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~  128 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN  128 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            3566677888999999999999999999999999999999999999999999999999988654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.03  E-value=1.6e-05  Score=59.24  Aligned_cols=86  Identities=10%  Similarity=-0.108  Sum_probs=44.9

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 008276          372 ISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAG  450 (571)
Q Consensus       372 i~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  450 (571)
                      ...+.+.|++++|+..|++.++  ..| +...|..+..++.+.|++++|+..|++..+.  .+.+...+..+...|...|
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHCC
Confidence            3444555555555555555555  233 3445555555555555555555555555542  2233445555555555555


Q ss_pred             CHHHHHHHHHh
Q 008276          451 KVEEAYDLIKQ  461 (571)
Q Consensus       451 ~~~~A~~~~~~  461 (571)
                      ++++|.+.+++
T Consensus        99 ~~~~A~~~l~~  109 (112)
T d1hxia_          99 NANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            55555555543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.00  E-value=8.8e-06  Score=63.94  Aligned_cols=44  Identities=14%  Similarity=0.232  Sum_probs=34.4

Q ss_pred             CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008276          483 NMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGI  533 (571)
Q Consensus       483 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  533 (571)
                      ++++|...|+++++++|++..++..|...       ..|.+++.+..++|+
T Consensus       101 ~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~~  144 (145)
T d1zu2a1         101 NFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQGL  144 (145)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred             hHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence            46889999999999999998877777665       456677777666664

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=5.5e-05  Score=54.12  Aligned_cols=75  Identities=13%  Similarity=0.059  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 008276          437 EHFACLVDLLGRAGKVEEAYDLIKQM----P----MEPN-ERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVL  507 (571)
Q Consensus       437 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  507 (571)
                      ..+..+...+.+.|++++|...|++.    +    ..++ ..++..+..++.+.|++++|+..++++++++|+++.++..
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N   85 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence            33445677777888888887777765    1    1222 5678889999999999999999999999999999998888


Q ss_pred             HHHH
Q 008276          508 LSNI  511 (571)
Q Consensus       508 l~~~  511 (571)
                      +...
T Consensus        86 l~~~   89 (95)
T d1tjca_          86 LKYF   89 (95)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.84  E-value=4.8e-05  Score=60.53  Aligned_cols=88  Identities=16%  Similarity=0.036  Sum_probs=62.3

Q ss_pred             HHHHHhcCCHHHHHHHHHhC----CCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--------
Q 008276          443 VDLLGRAGKVEEAYDLIKQM----PMEPN----------ERIWGSLVAACCLYSNMDIGILAADHIFHLAPN--------  500 (571)
Q Consensus       443 ~~~~~~~g~~~~A~~~~~~~----~~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--------  500 (571)
                      ...+.+.|++++|+..|++.    +..|+          ..+|+.+..+|...|++++|+..+++++++.|.        
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            33445556666666666554    11111          356777888888899999999888888875421        


Q ss_pred             ---CchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008276          501 ---QSGYYVLLSNIYAKAGRWGDVKRVRKFMNS  530 (571)
Q Consensus       501 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  530 (571)
                         ...++..++.+|...|++++|...|++..+
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence               123577889999999999999999998764

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=0.00013  Score=55.56  Aligned_cols=56  Identities=11%  Similarity=-0.046  Sum_probs=28.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 008276          371 MISAYGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTE  428 (571)
Q Consensus       371 li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  428 (571)
                      +...+.+.|++++|+..|++.++.  .| +...+..+..+|...|++++|...++++.+
T Consensus        10 ~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_          10 LGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            344455555555555555555552  22 333445555555555555555555555443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.76  E-value=1.2e-05  Score=63.04  Aligned_cols=85  Identities=8%  Similarity=0.006  Sum_probs=59.3

Q ss_pred             hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 008276          448 RAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCL----------YSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKA  515 (571)
Q Consensus       448 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  515 (571)
                      +.+.+++|+..|++. ...| +..++..+..++..          .+.+++|+..|+++++++|++..+|..++.+|...
T Consensus         9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~   88 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   88 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence            344455555555554 3333 44444444444432          34568899999999999999999999999999877


Q ss_pred             CC-----------HHHHHHHHHHHHhCC
Q 008276          516 GR-----------WGDVKRVRKFMNSKG  532 (571)
Q Consensus       516 g~-----------~~~A~~~~~~m~~~~  532 (571)
                      |+           +++|.+.|++..+-.
T Consensus        89 g~~~~~~~~~~~~~~~A~~~~~kal~l~  116 (145)
T d1zu2a1          89 AFLTPDETEAKHNFDLATQFFQQAVDEQ  116 (145)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccchhhHHHHHHhHHHhhhhhhcccccC
Confidence            64           688888888877544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=7.2e-06  Score=79.59  Aligned_cols=205  Identities=11%  Similarity=-0.061  Sum_probs=91.0

Q ss_pred             hhhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccCCchHHHHHHHHHHHHcCCCCChhHHHHHH-
Q 008276          264 LVSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAI-SVASVLPACGDLSALLLGRKIHRYVERKKLQPNLRLENALV-  341 (571)
Q Consensus       264 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-  341 (571)
                      ..++..+..++...|++++|   |++++..  .|+.. .+.. ...+- ...+..+...++...+....++..-..... 
T Consensus        20 a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~-e~~Lw-~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~   92 (497)
T d1ya0a1          20 TDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKV-EQDLW-NHAFKNQITTLQGQAKNRANPNRSEVQANLS   92 (497)
T ss_dssp             TCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTH-HHHHH-HHHTHHHHHHHHHHHSCSSCTTTTHHHHHHH
T ss_pred             HHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhH-HHHHH-HHHHHHHHHHHHHhcccccCccHHHHHHHHH
Confidence            34555566667777777665   5555432  22211 1100 00000 011334455555555433233322221111 


Q ss_pred             -HHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHH
Q 008276          342 -DMYAKCGSLTEARTVFDQMRC---QDVVSWTSMISAYGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLE  417 (571)
Q Consensus       342 -~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~  417 (571)
                       ......+.++.+...+....+   ++...+..+...+.+.|+.++|...+.+....  .| ..++..+...+...++++
T Consensus        93 ~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~~~~LG~l~~~~~~~~  169 (497)
T d1ya0a1          93 LFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHCLVHLGDIARYRNQTS  169 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHH--HH-HHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHHHHHHHHHHHHcccHH
Confidence             112233455566555555433   34445666666667777777777766655441  11 235666666777777777


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHh
Q 008276          418 EGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM--PMEPNERIWGSLVAACCL  480 (571)
Q Consensus       418 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~  480 (571)
                      +|...|++..+.  .+.+...|+.+...+...|+..+|...|.+.  -..|-+.++..|...+.+
T Consensus       170 ~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         170 QAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            777777777653  2334466777777777777777777777665  223456666666665543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.66  E-value=6.1e-05  Score=65.49  Aligned_cols=127  Identities=13%  Similarity=-0.024  Sum_probs=80.1

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCH
Q 008276          375 YGMSGQGYDAVALFSKMLMSGLCP-DSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPR-IEHFACLVDLLGRAGKV  452 (571)
Q Consensus       375 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~  452 (571)
                      ..+.|++++|+..+++.++.  .| |...+..+...++..|++++|...++...+.   .|+ ...+..+...+...+..
T Consensus         6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~   80 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQAR   80 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhcccc
Confidence            34568888888888888884  44 5567888888888888888888888888764   343 34444455555444444


Q ss_pred             HHHHHHHHhC--CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 008276          453 EEAYDLIKQM--PMEP-NERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV  506 (571)
Q Consensus       453 ~~A~~~~~~~--~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  506 (571)
                      +++..-....  ...| +...+......+...|+.++|...++++.+..|..+..+.
T Consensus        81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~  137 (264)
T d1zbpa1          81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN  137 (264)
T ss_dssp             HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred             HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence            4443322221  1122 2233334445566778888888888888888777665543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.49  E-value=0.0005  Score=54.33  Aligned_cols=91  Identities=13%  Similarity=0.016  Sum_probs=54.6

Q ss_pred             hhcCCCHHHHHHHHHHHHHhcCCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC----
Q 008276          410 CSHAGLLEEGRYYFKIMTEQYKLVPR----------IEHFACLVDLLGRAGKVEEAYDLIKQM--------PMEPN----  467 (571)
Q Consensus       410 ~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~----  467 (571)
                      +...|++++|+..|++..+.....|+          ...|+.+..+|...|++++|.+.+++.        ...++    
T Consensus        19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~   98 (156)
T d2hr2a1          19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL   98 (156)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence            33445555555555555443222221          234556666666666666666655543        11221    


Q ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 008276          468 -ERIWGSLVAACCLYSNMDIGILAADHIFHLAPN  500 (571)
Q Consensus       468 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  500 (571)
                       ...+..+..+|...|++++|+..|++++++.|.
T Consensus        99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          99 WISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence             224666788899999999999999999987643

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.48  E-value=5.7e-05  Score=65.70  Aligned_cols=121  Identities=12%  Similarity=-0.007  Sum_probs=87.3

Q ss_pred             hhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 008276          410 CSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQM-PMEPN-ERIWGSLVAACCLYSNMDIG  487 (571)
Q Consensus       410 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A  487 (571)
                      ..+.|++++|+..+++..+  ..+.+...+..+...|+..|++++|.+.++.. ...|+ ...+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence            4577999999999999987  44667789999999999999999999999988 55674 44555555554444433333


Q ss_pred             HHHHHHHHhh-CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          488 ILAADHIFHL-APNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       488 ~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      .......... .|+....+...+..+...|+.++|.+.++++.+..
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            2222211112 24444556667778889999999999999988764

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.47  E-value=0.00091  Score=54.01  Aligned_cols=57  Identities=14%  Similarity=0.214  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008276          438 HFACLVDLLGRAGKVEEAYDLIKQM-PMEP-NERIWGSLVAACCLYSNMDIGILAADHI  494 (571)
Q Consensus       438 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~  494 (571)
                      .+..++..+.+.|++++|+..++++ ...| +...|..++.++...|+..+|++.|+++
T Consensus        69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          69 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3445555666666666666666555 3344 5556666666666666666666666655

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00062  Score=48.35  Aligned_cols=64  Identities=9%  Similarity=-0.103  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------chhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          469 RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQ-------SGYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       469 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      ..+-.+...+.+.|++++|+..|++++++.|.+       ..++..++.++.+.|++++|+..++++.+..
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            334467888999999999999999999876433       4578999999999999999999999998764

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=97.02  E-value=0.03  Score=40.25  Aligned_cols=141  Identities=9%  Similarity=-0.010  Sum_probs=93.8

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008276          375 YGMSGQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEE  454 (571)
Q Consensus       375 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  454 (571)
                      +...|..++..+++.+....   .+..-|+-++--....-+-+...+.++.+-+.+.+.|              +++...
T Consensus        12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~   74 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS   74 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred             HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence            44567777777777766653   2334455555444555556666666666644322222              222233


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008276          455 AYDLIKQMPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMNSKGIK  534 (571)
Q Consensus       455 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  534 (571)
                      ...-+-.+  ..+...++..+..+.+.|+-+.-.++++.+.+.+..++.+...++.+|.+.|...++.+++.+..++|++
T Consensus        75 vv~C~~~~--n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          75 VVECGVIN--NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHHHT--TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHh--cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            33222222  2234455667788889999999999999988888788999999999999999999999999999999874

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=96.09  E-value=0.54  Score=43.49  Aligned_cols=32  Identities=13%  Similarity=-0.091  Sum_probs=22.0

Q ss_pred             ChhhHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 008276          263 NLVSWNVMIAVYANNSMPAEAVDLYLQMEVHG  294 (571)
Q Consensus       263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g  294 (571)
                      +...-+....+....|+.++|...+..+-..|
T Consensus       101 ~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~  132 (450)
T d1qsaa1         101 TTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG  132 (450)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence            44555566777778888888887777665544

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.76  Score=42.45  Aligned_cols=203  Identities=9%  Similarity=-0.049  Sum_probs=109.0

Q ss_pred             CchHHHHHHHHHHHHcCCCCChhHHHHHH----HHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHH
Q 008276          313 SALLLGRKIHRYVERKKLQPNLRLENALV----DMYAKCGSLTEARTVFDQMRC--QDVVSWTSMISAYGMSGQGYDAVA  386 (571)
Q Consensus       313 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~  386 (571)
                      .+.+.+...+......... +..-...+-    ..+...+..+.+...+.....  .+.....-.+......+++..+..
T Consensus       228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~  306 (450)
T d1qsaa1         228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNT  306 (450)
T ss_dssp             HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHH
Confidence            4566677776666554322 222222111    122234455556555544332  344444444555566677777777


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 008276          387 LFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGRAGKVEEAYDLIKQMPMEP  466 (571)
Q Consensus       387 ~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p  466 (571)
                      .+..|... ..-...-..-+.+++...|+.+.|...|..+..    .++  .|..|..  .+.|..-.. . ....+..+
T Consensus       307 ~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa--~~Lg~~~~~-~-~~~~~~~~  375 (450)
T d1qsaa1         307 WLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAA--QRIGEEYEL-K-IDKAPQNV  375 (450)
T ss_dssp             HHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHH--HHTTCCCCC-C-CCCCCSCC
T ss_pred             HHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHH--HHcCCCCCC-C-cCCCCccH
Confidence            77766432 111233333456777778888888888877753    233  2332222  122210000 0 00001111


Q ss_pred             CH-HH---HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008276          467 NE-RI---WGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLLSNIYAKAGRWGDVKRVRKFMN  529 (571)
Q Consensus       467 ~~-~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  529 (571)
                      .. ..   -..-+..+...|....|...+..+....  ++.-...++....+.|.++.|+....+..
T Consensus       376 ~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~~  440 (450)
T d1qsaa1         376 DSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAGK  440 (450)
T ss_dssp             CCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence            11 00   1123455678899999999998887543  45677788888999999999998877653

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.59  E-value=0.031  Score=40.69  Aligned_cols=73  Identities=10%  Similarity=0.038  Sum_probs=45.5

Q ss_pred             CCHHHHHHHHHHHHhcC---CHHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 008276          434 PRIEHFACLVDLLGRAG---KVEEAYDLIKQM-PMEP-NE-RIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYV  506 (571)
Q Consensus       434 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  506 (571)
                      ++..+--....++.+..   +.++++.+|+++ ...| +. ..+-.|.-+|.+.|++++|...++++++++|++..+..
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~  111 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  111 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence            44555555666666554   345667777666 2233 32 35555666777777777777777777777777765543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.51  E-value=0.095  Score=39.15  Aligned_cols=50  Identities=6%  Similarity=-0.086  Sum_probs=30.8

Q ss_pred             CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 008276          482 SNMDIGILAADHIFHLAPNQSGYYVLLSNIYAK----AGRWGDVKRVRKFMNSKGI  533 (571)
Q Consensus       482 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~  533 (571)
                      .|.++|...|+++.+.+  ++.....|+..|.+    ..+.++|.+++++..+.|.
T Consensus        73 ~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          73 KDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            35666666666666544  34456666666655    3467777777777666653

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.05  E-value=0.16  Score=36.44  Aligned_cols=65  Identities=8%  Similarity=-0.048  Sum_probs=43.7

Q ss_pred             hhHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHcCC
Q 008276          265 VSWNVMIAVYANNSMPAEAVDLYLQMEVHGIEPNAISVASVLPACGDLSALLLGRKIHRYVERKKL  330 (571)
Q Consensus       265 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  330 (571)
                      .....-++.+.++|+-+.-.++++.+.+.+ +|++.....+..+|.+.|+..++..++.++-+.|+
T Consensus        87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            344555666777777777777777766543 66677777777777777777777777777766664

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.81  E-value=0.12  Score=37.49  Aligned_cols=68  Identities=12%  Similarity=0.048  Sum_probs=48.2

Q ss_pred             CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhCCCCc-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008276          465 EPNERIWGSLVAACCLY---SNMDIGILAADHIFHLAPNQS-GYYVLLSNIYAKAGRWGDVKRVRKFMNSKG  532 (571)
Q Consensus       465 ~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  532 (571)
                      .|...+--.+..++.++   .+.++|+.+++.+.+.+|.+. ..+..|+.+|.+.|++++|+++++.+.+..
T Consensus        32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie  103 (124)
T d2pqrb1          32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  103 (124)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            34555555666666654   345678888888887777654 577788888888888888888888777543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.75  E-value=0.33  Score=36.00  Aligned_cols=112  Identities=10%  Similarity=-0.044  Sum_probs=75.1

Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHH
Q 008276          379 GQGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVDLLGR----AGKVEE  454 (571)
Q Consensus       379 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~  454 (571)
                      .|+++|+++|++..+.|..   .....+.  .....+.++|..++++..+. +   ++.....|...|..    ..+.++
T Consensus         7 kd~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~   77 (133)
T d1klxa_           7 KDLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRK   77 (133)
T ss_dssp             HHHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             cCHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHH
Confidence            3678888888888887632   2222232  34456788899988888764 3   45555566666654    456889


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCC
Q 008276          455 AYDLIKQMPMEPNERIWGSLVAACCL----YSNMDIGILAADHIFHLAP  499 (571)
Q Consensus       455 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p  499 (571)
                      |.++|++.-..-++.....|...|..    ..|.++|...|+++.+.+.
T Consensus        78 A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          78 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            99999887222345555556666554    4688999999999888764

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.32  E-value=1.3  Score=29.95  Aligned_cols=63  Identities=11%  Similarity=0.276  Sum_probs=48.8

Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 008276          380 QGYDAVALFSKMLMSGLCPDSIAFVSVLSACSHAGLLEEGRYYFKIMTEQYKLVPRIEHFACLVD  444 (571)
Q Consensus       380 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  444 (571)
                      +.-++.+-+..+....+.|++......+++|.+.+++..|.++++.++.+.+  ++...|..++.
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq   83 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ   83 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence            4556777777777888899999999999999999999999999999887533  33445555443

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.09  E-value=4.5  Score=27.21  Aligned_cols=47  Identities=13%  Similarity=0.228  Sum_probs=35.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 008276          462 MPMEPNERIWGSLVAACCLYSNMDIGILAADHIFHLAPNQSGYYVLL  508 (571)
Q Consensus       462 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  508 (571)
                      +..-|++....+.+++|.+.+|+..|+++++-+...--++...|..+
T Consensus        35 ~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yi   81 (105)
T d1v54e_          35 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV   81 (105)
T ss_dssp             SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred             cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            36678888888888888888888888888888776553345566555