Citrus Sinensis ID: 008325

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570

MMNYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIERLSRQSVFIGNCYAISPERVIGRFPGLKSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSGLLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDDQMEFSLDDRQKVGKMYLYRTLVGPRKDAPDFVWTL

ccccccHHHHHHHHHccccHHHHHHHHHHcHHHHHHHcccccEEEEcccccccHHHHHHccccccEEEcccccccccccccccccccccHHHHHHHHHHcccccEEEccccEEccHHHHHHHHccccccEEEEcccccccHHHHHHHHHHccccEEEEEEcccccccccHHHHHcccccccccEEEcccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHcccccEEEccccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccHHHHHHHHHccccccEEEEEEcccccccccHHHHHHHHHcccccEEEEcccccccHHHHHHHHHcccccccccEEccccccccccccccHHHHHHHHHHccccccEEEccccccHHHHHHHHHccccccEEEcccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHccccccEEEEEcccccHHHHHHHHHHccccEEEEEcccccccccccccccccEEEEEEEccccccccccccccc

cccHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHcccccEEEEccccccccccccccccccccHHHHHHHHHHcccccEEEcccEEEcHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHcccccEEEcccccccccccHHHHHccccccccEEEEEccccccccHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHcccHHEcccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccEEcccccccccHHHHHHHHHccccccEEEHHccccHHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccccccccHHHHHHHHHHccccccEEEccccccHHHHHHHHHHcHHHHEEEEccccccHHHHHHHHHccccccEEEEccccccHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHcccEEEEEEcccccccccccccccccEEEEEEEcccccccccccEEEc

MMNYFPDEVIEHVFDFVtsqkdrnavsLVCKSWYKierlsrqsvfigncyaispervigrfpglksltlkgkphfadfnllpydwggwvyPWVEALAKSRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELdlqeievddnrgqwiscfpdsctsLVSLNFSCLKGEINLTALERLVArspnlkslrlnravPLDTLQKLLMRapqlvdlgigsfvydpsseAYIKLKATLVKCKSIrslsgflevvpcclsaihpvcqnltslnlsyapgihgNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELqelrvfpsgvdnaavTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCildrekpdpvtmqpldegFGAIVQSCKRLRRLslsglltdQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLrkleirdspfgntallTDVGKYETMRSLWMSSCEVTLGGCQTLAkkmprlnveiineddqmefslddrqkvGKMYLYRtlvgprkdapdfvwtl

MMNYFPDEVIEHVFDfvtsqkdrnaVSLVCKSWykierlsrqsvFIGNCYAISPERVIGRFPGLKSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTSLVSLNFSCLKGEINLTALERLVARspnlkslrlnrAVPLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSGLLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKleirdspfgntalLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEiineddqmefslddrqkVGKMYLYrtlvgprkdapdfvwtl

MMNYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIERLSRQSVFIGNCYAISPERVIGRFPGLKSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKrlrrlslsgllTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDDQMEFSLDDRQKVGKMYLYRTLVGPRKDAPDFVWTL

***YFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIERLSRQSVFIGNCYAISPERVIGRFPGLKSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVYDPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSGLLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDDQMEFSLDDRQKVGKMYLYRTLVGPRKDAPDFVW**

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		570	2.2.26 [Sep-21-2011]
Q9LW29		575	Protein AUXIN SIGNALING F	yes	no	0.998	0.989	0.787	0.0
Q9LPW7		577	Protein AUXIN SIGNALING F	no	no	0.998	0.986	0.764	0.0
Q7XVM8		575	Transport inhibitor respo	yes	no	0.998	0.989	0.667	0.0
Q2R3K5		568	Transport inhibitor respo	no	no	0.989	0.992	0.605	0.0
Q570C0		594	Protein TRANSPORT INHIBIT	no	no	0.989	0.949	0.617	0.0
Q9ZR12		585	GRR1-like protein 1 OS=Ar	no	no	0.987	0.962	0.564	0.0
Q0DKP3		587	Transport inhibitor respo	no	no	0.989	0.960	0.575	1e-172
Q9LTX2		619	Transport inhibitor respo	no	no	0.984	0.906	0.535	1e-166
Q8RWQ8		623	F-box protein FBX14 OS=Ar	no	no	0.987	0.903	0.527	1e-164
O04197		592	Coronatine-insensitive pr	no	no	0.971	0.935	0.323	1e-76

>sp\|Q9LW29\|AFB2_ARATH Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana GN=AFB2 PE=1 SV=1	Back alignment and function desciption

 Score =  915 bits (2365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/575 (78%), Positives = 508/575 (88%), Gaps = 6/575 (1%)

Query: 2   MNYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIERLSRQSVFIGNCYAISPERVIGRF 61
           MNYFPDEVIEHVFDFVTS KDRNA+SLVCKSWYKIER SRQ VFIGNCYAI+PER++ RF
Sbjct: 1   MNYFPDEVIEHVFDFVTSHKDRNAISLVCKSWYKIERYSRQKVFIGNCYAINPERLLRRF 60

Query: 62  PGLKSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLELL 121
           P LKSLTLKGKPHFADFNL+P++WGG+V PW+EALA+SRVGLEELRLKRMVV+D+ LELL
Sbjct: 61  PCLKSLTLKGKPHFADFNLVPHEWGGFVLPWIEALARSRVGLEELRLKRMVVTDESLELL 120

Query: 122 SRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTS 181
           SRSFVNFKSLVLVSCEGFTTDGLA+IAANCR+LR+LDLQE E+DD+RGQW+SCFPD+CT+
Sbjct: 121 SRSFVNFKSLVLVSCEGFTTDGLASIAANCRHLRDLDLQENEIDDHRGQWLSCFPDTCTT 180

Query: 182 LVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSF 241
           LV+LNF+CL+GE NL ALERLVARSPNLKSL+LNRAVPLD L +L+  APQ+VDLG+GS+
Sbjct: 181 LVTLNFACLEGETNLVALERLVARSPNLKSLKLNRAVPLDALARLMACAPQIVDLGVGSY 240

Query: 242 VYDPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGN 301
             DP SE+Y+KL A + KC S+RSLSGFLE  P CLSA HP+C NLTSLNLSYA  IHG+
Sbjct: 241 ENDPDSESYLKLMAVIKKCTSLRSLSGFLEAAPHCLSAFHPICHNLTSLNLSYAAEIHGS 300

Query: 302 ELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPS---GVDNAAVTEEGLV 358
            LIKLI+ C+KL+RLWILDSIGD+GL VVA TCKELQELRVFPS   G  N AVTEEGLV
Sbjct: 301 HLIKLIQHCKKLQRLWILDSIGDKGLEVVASTCKELQELRVFPSDLLGGGNTAVTEEGLV 360

Query: 359 AISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFG 418
           AISAGCPKLHS+LYFCQQMTNAAL+TVAKN  NF RFRLCIL+  KPD VT QPLDEGFG
Sbjct: 361 AISAGCPKLHSILYFCQQMTNAALVTVAKNCPNFIRFRLCILEPNKPDHVTSQPLDEGFG 420

Query: 419 AIVQSCKRLRRLSLSGLLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRK 478
           AIV++CK LRRLSLSGLLTDQVFLYIGMYA QLEMLSIAFAG++DKGMLYVLNGCKK++K
Sbjct: 421 AIVKACKSLRRLSLSGLLTDQVFLYIGMYANQLEMLSIAFAGDTDKGMLYVLNGCKKMKK 480

Query: 479 LEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDDQ-- 536
           LEIRDSPFG+TALL DV KYETMRSLWMSSCEVTL GC+ LA+K P LNVEIINE+D   
Sbjct: 481 LEIRDSPFGDTALLADVSKYETMRSLWMSSCEVTLSGCKRLAEKAPWLNVEIINENDNNR 540

Query: 537 -MEFSLDDRQKVGKMYLYRTLVGPRKDAPDFVWTL 570
             E   + RQKV K+YLYRT+VG R DAP FVW L
Sbjct: 541 MEENGHEGRQKVDKLYLYRTVVGTRMDAPPFVWIL 575

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Confers sensitivity to the virulent bacterial pathogen P.syringae (By similarity). Auxin receptor that mediates Aux/IAA proteins proteasomal degradation and auxin-regulated transcription. Involved in embryogenesis regulation by auxin.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9LPW7\|AFB3_ARATH Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana GN=AFB3 PE=1 SV=1	Back alignment and function description

>sp\|Q7XVM8\|TIR1B_ORYSJ Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica GN=Os04g0395600 PE=2 SV=1	Back alignment and function description

>sp\|Q2R3K5\|TIRC_ORYSJ Transport inhibitor response 1-like protein Os11g0515500 OS=Oryza sativa subsp. japonica GN=Os11g0515500 PE=2 SV=1	Back alignment and function description

>sp\|Q570C0\|TIR1_ARATH Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana GN=TIR1 PE=1 SV=2	Back alignment and function description

>sp\|Q9ZR12\|GRH1_ARATH GRR1-like protein 1 OS=Arabidopsis thaliana GN=GRH1 PE=1 SV=1	Back alignment and function description

>sp\|Q0DKP3\|TIR1A_ORYSJ Transport inhibitor response 1-like protein Os05g0150500 OS=Oryza sativa subsp. japonica GN=Os05g0150500 PE=2 SV=2	Back alignment and function description

>sp\|Q9LTX2\|TIR1L_ARATH Transport inhibitor response 1-like protein OS=Arabidopsis thaliana GN=At5g49980 PE=1 SV=1	Back alignment and function description

>sp\|Q8RWQ8\|FBX14_ARATH F-box protein FBX14 OS=Arabidopsis thaliana GN=FBX14 PE=2 SV=1	Back alignment and function description

>sp\|O04197\|COI1_ARATH Coronatine-insensitive protein 1 OS=Arabidopsis thaliana GN=COI1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		570
219879372		569	transport inhibitor response protein [Ci	0.998	1.0	0.991	0.0
377684868		572	transport inhibitor response protein [Pr	0.998	0.994	0.840	0.0
225451571		572	PREDICTED: protein AUXIN SIGNALING F-BOX	0.998	0.994	0.837	0.0
356571615		572	PREDICTED: protein AUXIN SIGNALING F-BOX	1.0	0.996	0.809	0.0
224060319		571	f-box family protein [Populus trichocarp	0.998	0.996	0.795	0.0
356561325		572	PREDICTED: protein AUXIN SIGNALING F-BOX	1.0	0.996	0.802	0.0
224129024		571	f-box family protein [Populus trichocarp	0.998	0.996	0.793	0.0
255543607		571	TRANSPORT INHIBITOR RESPONSE 1 protein,	0.998	0.996	0.823	0.0
357508349		571	Protein AUXIN SIGNALING F-BOX [Medicago	0.998	0.996	0.798	0.0
110225915		571	auxin-responsive factor TIR1-like protei	0.998	0.996	0.789	0.0

>gi\|219879372\|gb\|ACL51018.1\| transport inhibitor response protein [Citrus trifoliata]	Back alignment and taxonomy information

 Score = 1158 bits (2996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/569 (99%), Positives = 566/569 (99%)

Query: 2   MNYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIERLSRQSVFIGNCYAISPERVIGRF 61
           MNYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIERLSR SVFIGNCYAISPERVIGRF
Sbjct: 1   MNYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIERLSRHSVFIGNCYAISPERVIGRF 60

Query: 62  PGLKSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLELL 121
           PGLKSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLELL
Sbjct: 61  PGLKSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLELL 120

Query: 122 SRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTS 181
           SRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTS
Sbjct: 121 SRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTS 180

Query: 182 LVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSF 241
           LVSLNFSCLKGEINLTALERLVARSPNLK+LRLNRAVPLDTLQKLLMRAPQLVDLGIGSF
Sbjct: 181 LVSLNFSCLKGEINLTALERLVARSPNLKNLRLNRAVPLDTLQKLLMRAPQLVDLGIGSF 240

Query: 242 VYDPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGN 301
           VYDPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGN
Sbjct: 241 VYDPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGN 300

Query: 302 ELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAIS 361
           ELIKLIRFCRKLERLW+LDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAIS
Sbjct: 301 ELIKLIRFCRKLERLWVLDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAIS 360

Query: 362 AGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIV 421
           AGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIV
Sbjct: 361 AGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIV 420

Query: 422 QSCKRLRRLSLSGLLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEI 481
           QSCK LRRLSLSGLLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEI
Sbjct: 421 QSCKHLRRLSLSGLLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEI 480

Query: 482 RDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDDQMEFSL 541
           RDSPFGNTALLTDVGKYETMRSLWMS CEVTLGGCQTLAKKMPRLNVEIINEDDQMEFSL
Sbjct: 481 RDSPFGNTALLTDVGKYETMRSLWMSPCEVTLGGCQTLAKKMPRLNVEIINEDDQMEFSL 540

Query: 542 DDRQKVGKMYLYRTLVGPRKDAPDFVWTL 570
           DDRQKVGKMYLYRTLVGPRKDAPDFVWTL
Sbjct: 541 DDRQKVGKMYLYRTLVGPRKDAPDFVWTL 569

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|377684868\|gb\|AFB74453.1\| transport inhibitor response protein [Prunus persica]	Back alignment and taxonomy information

>gi\|225451571\|ref\|XP_002274892.1\| PREDICTED: protein AUXIN SIGNALING F-BOX 3 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356571615\|ref\|XP_003553972.1\| PREDICTED: protein AUXIN SIGNALING F-BOX 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|224060319\|ref\|XP_002300140.1\| f-box family protein [Populus trichocarpa] gi\|222847398\|gb\|EEE84945.1\| f-box family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356561325\|ref\|XP_003548933.1\| PREDICTED: protein AUXIN SIGNALING F-BOX 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|224129024\|ref\|XP_002328871.1\| f-box family protein [Populus trichocarpa] gi\|222839301\|gb\|EEE77638.1\| f-box family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255543607\|ref\|XP_002512866.1\| TRANSPORT INHIBITOR RESPONSE 1 protein, putative [Ricinus communis] gi\|223547877\|gb\|EEF49369.1\| TRANSPORT INHIBITOR RESPONSE 1 protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|357508349\|ref\|XP_003624463.1\| Protein AUXIN SIGNALING F-BOX [Medicago truncatula] gi\|355499478\|gb\|AES80681.1\| Protein AUXIN SIGNALING F-BOX [Medicago truncatula]	Back alignment and taxonomy information

>gi\|110225915\|gb\|ABG56238.1\| auxin-responsive factor TIR1-like protein [Populus tomentosa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		570
UNIPROTKB\|B8Y9B4		569	TIR1 "Transport inhibitor resp	0.998	1.0	0.973	6.8e-301
UNIPROTKB\|B9RH07		571	RCOM_1445820 "TRANSPORT INHIBI	0.998	0.996	0.805	6.4e-250
UNIPROTKB\|B9GFH2		571	FBL3 "F-box family protein" [P	0.998	0.996	0.779	6.8e-246
UNIPROTKB\|B9N0V8		571	FBL4 "F-box family protein" [P	0.998	0.996	0.779	1.4e-245
UNIPROTKB\|Q0Z845		571	TIR1 "Auxin-responsive factor	0.998	0.996	0.774	3e-243
TAIR\|locus:2088464		575	AFB2 "AT3G26810" [Arabidopsis	0.998	0.989	0.772	1.3e-240
TAIR\|locus:2010366		577	AFB3 "AT1G12820" [Arabidopsis	0.992	0.980	0.750	1e-233
UNIPROTKB\|A5JVC9		590	A5JVC9 "Putative uncharacteriz	0.998	0.964	0.724	4e-225
UNIPROTKB\|A5JVD6		715	A5JVD6 "Putative uncharacteriz	0.980	0.781	0.716	5e-218
UNIPROTKB\|A2XSX3		575	OsI_15707 "Putative uncharacte	0.992	0.984	0.655	1.1e-204

UNIPROTKB\|B8Y9B4 TIR1 "Transport inhibitor response protein" [Citrus trifoliata (taxid:37690)]	Back alignment and assigned GO terms

 Score = 2888 (1021.7 bits), Expect = 6.8e-301, P = 6.8e-301
 Identities = 554/569 (97%), Positives = 556/569 (97%)

Query:     2 MNYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIERLSRQSVFIGNCYAISPERVIGRF 61
             MNYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIERLSR SVFIGNCYAISPERVIGRF
Sbjct:     1 MNYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIERLSRHSVFIGNCYAISPERVIGRF 60

Query:    62 PGLKSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLELL 121
             PGLKSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLELL
Sbjct:    61 PGLKSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLELL 120

Query:   122 SRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTS 181
             SRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTS
Sbjct:   121 SRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTS 180

Query:   182 LVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSF 241
             LVSLNFSCLKGEINLTALERLVARSPNLK+LRLNRAVPLDTLQKLLMRAPQLVDLGIGSF
Sbjct:   181 LVSLNFSCLKGEINLTALERLVARSPNLKNLRLNRAVPLDTLQKLLMRAPQLVDLGIGSF 240

Query:   242 VYDPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGN 301
             VYDPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGN
Sbjct:   241 VYDPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGN 300

Query:   302 ELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAIS 361
             ELIKLIRFCRKLERLW+LDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAIS
Sbjct:   301 ELIKLIRFCRKLERLWVLDSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAIS 360

Query:   362 AGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIV 421
             AGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIV
Sbjct:   361 AGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAIV 420

Query:   422 QSCKXXXXXXXXXXXTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEI 481
             QSCK           TDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEI
Sbjct:   421 QSCKHLRRLSLSGLLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEI 480

Query:   482 RDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDDQMEFSL 541
             RDSPFGNTALLTDVGKYETMRSLWMS CEVTLGGCQTLAKKMPRLNVEIINEDDQMEFSL
Sbjct:   481 RDSPFGNTALLTDVGKYETMRSLWMSPCEVTLGGCQTLAKKMPRLNVEIINEDDQMEFSL 540

Query:   542 DDRQKVGKMYLYRTLVGPRKDAPDFVWTL 570
             DDRQKVGKMYLYRTLVGPRKDAPDFVWTL
Sbjct:   541 DDRQKVGKMYLYRTLVGPRKDAPDFVWTL 569

GO:0000822 "inositol hexakisphosphate binding" evidence=ISS

GO:0009734 "auxin mediated signaling pathway" evidence=ISS

UNIPROTKB\|B9RH07 RCOM_1445820 "TRANSPORT INHIBITOR RESPONSE 1 protein, putative" [Ricinus communis (taxid:3988)]	Back alignment and assigned GO terms

UNIPROTKB\|B9GFH2 FBL3 "F-box family protein" [Populus trichocarpa (taxid:3694)]	Back alignment and assigned GO terms

UNIPROTKB\|B9N0V8 FBL4 "F-box family protein" [Populus trichocarpa (taxid:3694)]	Back alignment and assigned GO terms

UNIPROTKB\|Q0Z845 TIR1 "Auxin-responsive factor TIR1-like protein" [Populus tomentosa (taxid:118781)]	Back alignment and assigned GO terms

TAIR\|locus:2088464 AFB2 "AT3G26810" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2010366 AFB3 "AT1G12820" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|A5JVC9 A5JVC9 "Putative uncharacterized protein" [Brassica rapa (taxid:3711)]	Back alignment and assigned GO terms

UNIPROTKB\|A5JVD6 A5JVD6 "Putative uncharacterized protein" [Brassica rapa (taxid:3711)]	Back alignment and assigned GO terms

UNIPROTKB\|A2XSX3 OsI_15707 "Putative uncharacterized protein" [Oryza sativa Indica Group (taxid:39946)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LPW7	AFB3_ARATH	No assigned EC number	0.7642	0.9982	0.9861	no	no
Q9LW29	AFB2_ARATH	No assigned EC number	0.7878	0.9982	0.9895	yes	no
Q7XVM8	TIR1B_ORYSJ	No assigned EC number	0.6678	0.9982	0.9895	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		570
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	7e-07
smart00256		41	smart00256, FBOX, A Receptor for Ubiquitination Ta	1e-04
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	0.002
pfam12937		47	pfam12937, F-box-like, F-box-like	0.003

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 57/225 (25%), Positives = 86/225 (38%), Gaps = 53/225 (23%)

Query: 280 IHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILDS--IGDRGLGVVAFTCKEL 337
           +  +   L  L L   P    +  +  +  C KL++L +  S  I D GL  +A +C  L
Sbjct: 23  LRILHSGLEWLELYMCPIS--DPPLDQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNL 80

Query: 338 QELRVFPSGVDNAAVTEEGLVAISAGCPKLHSL----LYFCQQMTNAALITVAKNNSNFT 393
           Q L +     +N  +T+ G+VA++  CPKL ++          +T+ +L  + KN +   
Sbjct: 81  QVLDL--RACEN--ITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQ 136

Query: 394 RFRLCILDREKPDPVTMQPLDEGFGAIVQSC-KRLRRLSLSG--LLTDQVFLYIGMYAEQ 450
                  D      VT    D+G   +   C K L RLSL+    LTDQ           
Sbjct: 137 TVGFAGCD------VT----DKGVWELASGCSKSLERLSLNNCRNLTDQ----------- 175

Query: 451 LEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDV 495
               SI          +   N    L  LE R        L+TD 
Sbjct: 176 ----SIP--------AILASNYFPNLSVLEFR-----GCPLITDF 203

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl\|CDD\|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|221867 pfam12937, F-box-like, F-box-like	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		570
KOG4341		483	consensus F-box protein containing LRR [General fu	100.0
KOG4341		483	consensus F-box protein containing LRR [General fu	99.94
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.91
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.82
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.82
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.71
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.67
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.65
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.59
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.58
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.57
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.56
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.28
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.27
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.21
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.1
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	99.07
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	98.98
PF12937		47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.98
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	98.98
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	98.92
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.78
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.75
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.71
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.65
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.61
PF00646		48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.5
smart00256		41	FBOX A Receptor for Ubiquitination Targets.	98.46
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.44
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.35
KOG0472		565	consensus Leucine-rich repeat protein [Function un	98.34
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	98.31
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.29
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.21
KOG3864		221	consensus Uncharacterized conserved protein [Funct	98.19
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.18
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.13
KOG4237		498	consensus Extracellular matrix protein slit, conta	97.94
KOG4237		498	consensus Extracellular matrix protein slit, conta	97.88
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.83
KOG4308		478	consensus LRR-containing protein [Function unknown	97.73
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.71
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	97.7
KOG4308		478	consensus LRR-containing protein [Function unknown	97.68
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	97.5
KOG3864		221	consensus Uncharacterized conserved protein [Funct	97.47
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.32
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	97.21
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	97.2
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.13
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.91
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.42
KOG0617		264	consensus Ras suppressor protein (contains leucine	96.35
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	96.26
KOG2123		388	consensus Uncharacterized conserved protein [Funct	96.24
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.17
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.01
KOG2123		388	consensus Uncharacterized conserved protein [Funct	96.0
PLN03215		373	ascorbic acid mannose pathway regulator 1; Provisi	95.99
KOG2997		366	consensus F-box protein FBX9 [General function pre	95.96
KOG0617		264	consensus Ras suppressor protein (contains leucine	95.86
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	95.79
KOG0472		565	consensus Leucine-rich repeat protein [Function un	95.58
PLN03150		623	hypothetical protein; Provisional	95.55
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	95.51
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.4
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	95.22
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	95.02
PLN03150		623	hypothetical protein; Provisional	94.96
KOG0281		499	consensus Beta-TrCP (transducin repeats containing	94.85
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	94.82
PF13013		109	F-box-like_2: F-box-like domain	94.39
PRK15386		426	type III secretion protein GogB; Provisional	94.28
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	93.44
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	92.9
KOG3763		585	consensus mRNA export factor TAP/MEX67 [RNA proces	92.4
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	91.92
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	91.71
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	90.74
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	90.58
KOG3763		585	consensus mRNA export factor TAP/MEX67 [RNA proces	90.08
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	89.53
KOG0274		537	consensus Cdc4 and related F-box and WD-40 protein	88.95
PRK15386		426	type III secretion protein GogB; Provisional	87.54
PF13504		17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	87.15

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=9.9e-36  Score=269.61  Aligned_cols=377  Identities=24%  Similarity=0.361  Sum_probs=274.3

Q ss_pred             CCcHHHHHHHHhhcCChhhhhHHHHHhHHHHHHhh--cccceEEeccccccchHHHHhhCCCCceeeeCCCCCcccCCCC
Q 008325            4 YFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIER--LSRQSVFIGNCYAISPERVIGRFPGLKSLTLKGKPHFADFNLL   81 (570)
Q Consensus         4 ~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~l~~l~l~~~~~~~~~~~~   81 (570)
                      .||+|++..||++|+ .+.+.+++++|+.|+..+.  ..|.++++......                ..           
T Consensus        74 ~LPpEl~lkvFS~LD-tksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rD----------------v~-----------  125 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLD-TKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRD----------------VD-----------  125 (483)
T ss_pred             cCCHHHHHHHHHHHh-HHHHHHHHHHHHHhhhhhhccccceeeehhcchhc----------------CC-----------
Confidence            599999999999999 8999999999999999863  45555544332110                00           


Q ss_pred             CCCCCCCcchHHHHHHhhC-CCCCEEEeCCC-ccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEec
Q 008325           82 PYDWGGWVYPWVEALAKSR-VGLEELRLKRM-VVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDL  159 (570)
Q Consensus        82 ~~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l  159 (570)
                              .+++..+..+| ..|++|.++++ .+.+..+..+...||+++.|.+.+|..+++..+..+.+.|++|++|++
T Consensus       126 --------g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L  197 (483)
T KOG4341|consen  126 --------GGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNL  197 (483)
T ss_pred             --------CcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhh
Confidence                    01123333333 35666666666 566666666666666666666666666666666666666666666665


Q ss_pred             cccccccccccccccccCCCCcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCCCchhHHHHHhhCCCceeecCc
Q 008325          160 QEIEVDDNRGQWISCFPDSCTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIG  239 (570)
Q Consensus       160 ~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~  239 (570)
                      ..|.                             .+++..+..+...|++|++|+++.|+.                    
T Consensus       198 ~~c~-----------------------------~iT~~~Lk~la~gC~kL~~lNlSwc~q--------------------  228 (483)
T KOG4341|consen  198 HSCS-----------------------------SITDVSLKYLAEGCRKLKYLNLSWCPQ--------------------  228 (483)
T ss_pred             cccc-----------------------------hhHHHHHHHHHHhhhhHHHhhhccCch--------------------
Confidence            5542                             223333334444444444444444431                    


Q ss_pred             ccccCCChHHHHHHHHHHhhcCCcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEec
Q 008325          240 SFVYDPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWIL  319 (570)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~  319 (570)
                                                      +..+++..+..++..++.+.+.||.....+.+                
T Consensus       229 --------------------------------i~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l----------------  260 (483)
T KOG4341|consen  229 --------------------------------ISGNGVQALQRGCKELEKLSLKGCLELELEAL----------------  260 (483)
T ss_pred             --------------------------------hhcCcchHHhccchhhhhhhhcccccccHHHH----------------
Confidence                                            11122333334444444444445554444333                


Q ss_pred             cccchhhHHHHHhcCCCCceeecccCCCCCCCcCHHHHHHHHccChhhHHH-HHhcccCChHHHHHHHhcCCCCceeeee
Q 008325          320 DSIGDRGLGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAISAGCPKLHSL-LYFCQQMTNAALITVAKNNSNFTRFRLC  398 (570)
Q Consensus       320 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~~~~~L~~L-l~~~~~l~~~~~~~l~~~~~~L~~L~l~  398 (570)
                              .....+++.+.++++.    +|+.++|.++..+...|..|+.| ..+|..+++..+.++.+++++|+.|.+.
T Consensus       261 --------~~~~~~~~~i~~lnl~----~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~  328 (483)
T KOG4341|consen  261 --------LKAAAYCLEILKLNLQ----HCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELS  328 (483)
T ss_pred             --------HHHhccChHhhccchh----hhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEecc
Confidence                    3344466777788877    78899999988888889999999 8999999999999999999999999998


Q ss_pred             eecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCC--cccHHHHHHHHhcccccceeecccCC-CChHHHHHHHhc---
Q 008325          399 ILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSG--LLTDQVFLYIGMYAEQLEMLSIAFAG-NSDKGMLYVLNG---  472 (570)
Q Consensus       399 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~--~i~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~---  472 (570)
                      .|.     .++    +.++..+..+++.|+.+++-+  .++|..+..++.+|+.|+.|.+++|. |||+|+.++...   
T Consensus       329 ~c~-----~fs----d~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~  399 (483)
T KOG4341|consen  329 GCQ-----QFS----DRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS  399 (483)
T ss_pred             ccc-----hhh----hhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence            775     677    889999999999999999977  77888899999999999999999998 799999888553   


Q ss_pred             CccCceEEecCCCCChHHHHHHHhccccccEEEeecc-cCChhHHHHHHhhCCceEEEEeecC
Q 008325          473 CKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSC-EVTLGGCQTLAKKMPRLNVEIINED  534 (570)
Q Consensus       473 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~i~~~~~~~l~~~~p~~~~~~~~~~  534 (570)
                      ...|+.+.+.+|+.+.+...+.+..|++|+.+++.+| +++.+++..++.++|..+|+.+.-.
T Consensus       400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~  462 (483)
T KOG4341|consen  400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFAP  462 (483)
T ss_pred             ccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhccC
Confidence            5789999999997777676788999999999999999 5999999999999999999877543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]	Back alignment and domain information

>smart00256 FBOX A Receptor for Ubiquitination Targets	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional	Back alignment and domain information

>KOG2997 consensus F-box protein FBX9 [General function prediction only]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>PF13013 F-box-like_2: F-box-like domain	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		570
2p1m_B		594	Tir1-ask1 Complex Structure Length = 594		0.0
3ogk_B		592	Structure Of Coi1-Ask1 In Complex With Coronatine A		1e-73

>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure Length = 594

Back alignment and structure

Iteration: 1

Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/570 (60%), Positives = 430/570 (75%), Gaps = 6/570 (1%) Query: 5 FPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIERLSRQSVFIGNCYAISPERVIGRFPGL 64 FP+EV+EHVF F+ KDRN+VSLVCKSWY+IER R+ VFIGNCYA+SP VI RFP + Sbjct: 9 FPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKV 68 Query: 65 KSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLELLSRS 124 +S+ LKGKPHFADFNL+P WGG+VYPW+EA++ S LEE+RLKRMVV+DDCLEL+++S Sbjct: 69 RSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKS 128 Query: 125 FVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCTSLVS 184 F NFK LVL SCEGF+TDGLAAIAA CR L+ELDL+E +VDD G W+S FPD+ TSLVS Sbjct: 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVS 188 Query: 185 LNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGSFVYD 244 LN SCL E++ +ALERLV R PNLKSL+LNRAVPL+ L LL RAPQL +LG G + + Sbjct: 189 LNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE 248 Query: 245 PSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELI 304 + Y L L CK +R LSGF + VP L A++ VC LT+LNLSYA + +L+ Sbjct: 249 VRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA-TVQSYDLV 307 Query: 305 KLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPSGV----DNAAVTEEGLVAI 360 KL+ C KL+RLW+LD I D GL V+A TCK+L+ELRVFPS N A+TE+GLV++ Sbjct: 308 KLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 Query: 361 SAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEGFGAI 420 S GCPKL S+LYFC+QMTNAALIT+A+N N TRFRLCI++ + PD +T++PLD GFGAI Sbjct: 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI 427 Query: 421 VQSCKXXXXXXXXXXXTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLE 480 V+ CK TD+VF YIG YA+++EMLS+AFAG+SD GM +VL+GC LRKLE Sbjct: 428 VEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE 487 Query: 481 IRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDDQMEFS 540 IRD PFG+ ALL + K ETMRSLWMSSC V+ G C+ L +KMP+LNVE+I+E + S Sbjct: 488 IRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPD-S 546 Query: 541 LDDRQKVGKMYLYRTLVGPRKDAPDFVWTL 570 + V ++++YRT+ GPR D P FVW + Sbjct: 547 RPESCPVERVFIYRTVAGPRFDMPGFVWNM 576

PyMOL of 2p1m

>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An Incomplete Jaz1 Degron Length = 592

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		570
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	0.0
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	1e-171
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	1e-28
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	3e-17
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	6e-17
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	1e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-14
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-12
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-07
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-05
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-04
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-05
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-05
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-04
1fs1_A		53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	3e-04
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-04

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

 Score =  556 bits (1435), Expect = 0.0
 Identities = 352/574 (61%), Positives = 441/574 (76%), Gaps = 6/574 (1%)

Query: 1   MMNYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIERLSRQSVFIGNCYAISPERVIGR 60
           +   FP+EV+EHVF F+   KDRN+VSLVCKSWY+IER  R+ VFIGNCYA+SP  VI R
Sbjct: 5   IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRR 64

Query: 61  FPGLKSLTLKGKPHFADFNLLPYDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLEL 120
           FP ++S+ LKGKPHFADFNL+P  WGG+VYPW+EA++ S   LEE+RLKRMVV+DDCLEL
Sbjct: 65  FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124

Query: 121 LSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQEIEVDDNRGQWISCFPDSCT 180
           +++SF NFK LVL SCEGF+TDGLAAIAA CR L+ELDL+E +VDD  G W+S FPD+ T
Sbjct: 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184

Query: 181 SLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGS 240
           SLVSLN SCL  E++ +ALERLV R PNLKSL+LNRAVPL+ L  LL RAPQL +LG G 
Sbjct: 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244

Query: 241 FVYDPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHG 300
           +  +   + Y  L   L  CK +R LSGF + VP  L A++ VC  LT+LNLSYA  +  
Sbjct: 245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQS 303

Query: 301 NELIKLIRFCRKLERLWILDSIGDRGLGVVAFTCKELQELRVFPS----GVDNAAVTEEG 356
            +L+KL+  C KL+RLW+LD I D GL V+A TCK+L+ELRVFPS       N A+TE+G
Sbjct: 304 YDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363

Query: 357 LVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFRLCILDREKPDPVTMQPLDEG 416
           LV++S GCPKL S+LYFC+QMTNAALIT+A+N  N TRFRLCI++ + PD +T++PLD G
Sbjct: 364 LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG 423

Query: 417 FGAIVQSCKRLRRLSLSGLLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKL 476
           FGAIV+ CK LRRLSLSGLLTD+VF YIG YA+++EMLS+AFAG+SD GM +VL+GC  L
Sbjct: 424 FGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSL 483

Query: 477 RKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDDQ 536
           RKLEIRD PFG+ ALL +  K ETMRSLWMSSC V+ G C+ L +KMP+LNVE+I+E   
Sbjct: 484 RKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543

Query: 537 MEFSLDDRQKVGKMYLYRTLVGPRKDAPDFVWTL 570
            + S  +   V ++++YRT+ GPR D P FVW +
Sbjct: 544 PD-SRPESCPVERVFIYRTVAGPRFDMPGFVWNM 576

PyMOL of 2p1m

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		570
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	100.0
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	100.0
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	100.0
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	99.98
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.93
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.83
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.82
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	99.82
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.82
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.81
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.8
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.8
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.8
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.79
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	99.78
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.78
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	99.77
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	99.77
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.77
1o6v_A		466	Internalin A; bacterial infection, extracellular r	99.76
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.76
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.74
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.73
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	99.72
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.72
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.71
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	99.71
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.69
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.69
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	99.68
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.68
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.67
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	99.67
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.67
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	99.67
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	99.67
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.66
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	99.64
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.64
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	99.62
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.61
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	99.61
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.57
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	99.53
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.52
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.51
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.49
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	99.49
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.45
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.44
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.42
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.42
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.4
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.39
4g8a_A		635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.39
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	99.38
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	99.36
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	99.34
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.29
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.29
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.28
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.27
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.27
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.27
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	99.25
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.25
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	99.25
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	99.24
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.23
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	99.22
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.22
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.19
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	99.18
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.18
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.18
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.18
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.16
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	99.15
1ogq_A		313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.15
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	99.06
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	99.06
1ozn_A		285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.05
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	99.05
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	99.05
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	99.03
4glp_A		310	Monocyte differentiation antigen CD14; alpha beta	99.01
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	99.0
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	98.96
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	98.96
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	98.95
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	98.9
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	98.89
1fs1_A		53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.87
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	98.86
3rfs_A		272	Internalin B, repeat modules, variable lymphocyte	98.85
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	98.82
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.8
2z62_A		276	TOLL-like receptor 4, variable lymphocyte recepto;	98.7
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.68
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	98.68
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	98.68
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.67
2o6q_A		270	Variable lymphocyte receptor A; leucine-rich repea	98.67
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.67
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.64
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.64
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	98.62
3m19_A		251	Variable lymphocyte receptor A diversity region; a	98.58
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	98.56
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.55
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	98.54
1p9a_G		290	Platelet glycoprotein IB alpha chain precursor; pl	98.52
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	98.47
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.46
3m19_A		251	Variable lymphocyte receptor A diversity region; a	98.42
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	98.4
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.34
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.3
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.27
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	98.26
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.22
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	98.21
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.13
3cvr_A		571	Invasion plasmid antigen; leucine rich repeat and	98.06
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	98.06
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	98.04
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	98.01
3e6j_A		229	Variable lymphocyte receptor diversity region; var	98.0
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.97
3l2o_B		312	F-box only protein 4; small G protein fold, UBL co	97.95
2o6s_A		208	Variable lymphocyte receptor B; leucine-rich repea	97.93
3e6j_A		229	Variable lymphocyte receptor diversity region; var	97.92
2e31_A		297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.89
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	97.88
2v70_A		220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.88
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	97.87
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	97.85
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	97.84
2v9t_B		220	SLIT homolog 2 protein N-product; structural prote	97.82
2xot_A		361	Amphoterin-induced protein 1; cell adhesion, neuro	97.77
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	97.75
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	97.54
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	97.54
2o6r_A		177	Variable lymphocyte receptor B; leucine-rich repea	97.38
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.37
3v7d_B		464	Cell division control protein 4; WD 40 domain, pho	97.36
2wfh_A		193	SLIT homolog 2 protein C-product; developmental pr	97.34
1w8a_A		192	SLIT protein; signaling protein, secreted protein,	97.29
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	97.29
3rw6_A		267	Nuclear RNA export factor 1; retroviral constituti	97.26
2ovr_B		445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.21
4b8c_D		727	Glucose-repressible alcohol dehydrogenase transcr	97.16
1p22_A		435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.15
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	97.12
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	96.7
4fdw_A		401	Leucine rich hypothetical protein; putative cell s	96.55
4fs7_A		394	Uncharacterized protein; leucine-rich repeats, pro	96.51
3g39_A		170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.4
2r9u_A		174	Variable lymphocyte receptor; adaptive immunity, V	96.36
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	95.97
2ifg_A		347	High affinity nerve growth factor receptor; TRK, T	94.99
4gt6_A		394	Cell surface protein; leucine rich repeats, putati	85.16

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

Probab=100.00  E-value=1.5e-62  Score=516.75  Aligned_cols=568  Identities=62%  Similarity=1.084  Sum_probs=507.2

Q ss_pred             CCCCCcHHHHHHHHhhcCChhhhhHHHHHhHHHHHHhhcccceEEeccccccchHHHHhhCCCCceeeeCCCCCcccCCC
Q 008325            1 MMNYFPDEVIEHVFDFVTSQKDRNAVSLVCKSWYKIERLSRQSVFIGNCYAISPERVIGRFPGLKSLTLKGKPHFADFNL   80 (570)
Q Consensus         1 ~i~~LP~eil~~If~~L~~~~~~~~~s~Vcr~W~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~l~l~~~~~~~~~~~   80 (570)
                      ++++||+|||.+||+||+..+|+.++++|||+|+++..+.+..+.+..++...+..+..+|++++++++++++.+.+.++
T Consensus         5 ~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l   84 (594)
T 2p1m_B            5 IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNL   84 (594)
T ss_dssp             -----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTC
T ss_pred             chhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhccc
Confidence            46899999999999999978999999999999999988888899999998888899999999999999999999999999


Q ss_pred             CCCCCCCCcchHHHHHHhhCCCCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHHHhCCCCCEEecc
Q 008325           81 LPYDWGGWVYPWVEALAKSRVGLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIAANCRYLRELDLQ  160 (570)
Q Consensus        81 ~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~  160 (570)
                      .|..|++...+|+..+...+++|++|+++++.+++..+..+++.+++|++|++.+|..++..++..+...|++|++|+++
T Consensus        85 ~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~  164 (594)
T 2p1m_B           85 VPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR  164 (594)
T ss_dssp             SCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECT
T ss_pred             ccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCc
Confidence            99999999999999999999999999999999999999999878999999999999888888898988899999999999


Q ss_pred             ccccccccccccccccCCCCcccEEEeccccCCCCHHHHHHHHHhCCCCceeecCCCCCchhHHHHHhhCCCceeecCcc
Q 008325          161 EIEVDDNRGQWISCFPDSCTSLVSLNFSCLKGEINLTALERLVARSPNLKSLRLNRAVPLDTLQKLLMRAPQLVDLGIGS  240 (570)
Q Consensus       161 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~  240 (570)
                      +|.+.+.+..++..+...+++|++|+++++...++...+..+...+++|+.|++++|..+.++...+..+++|++|+++.
T Consensus       165 ~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~  244 (594)
T 2p1m_B          165 ESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG  244 (594)
T ss_dssp             TCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSB
T ss_pred             CCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccccc
Confidence            99988888888888888999999999997754578888999888899999999999987888999999999999999988


Q ss_pred             cccCCChHHHHHHHHHHhhcCCcccccCCcccChhhHHhHhhhCCCCCEEecCCCCCCChHHHHHHHhcCCCCCEEEecc
Q 008325          241 FVYDPSSEAYIKLKATLVKCKSIRSLSGFLEVVPCCLSAIHPVCQNLTSLNLSYAPGIHGNELIKLIRFCRKLERLWILD  320 (570)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~  320 (570)
                      +...........+...+..+++|+.|.++.......+..+...+++|++|++++|. +++..+..++..+++|+.|++.+
T Consensus       245 ~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~  323 (594)
T 2p1m_B          245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLD  323 (594)
T ss_dssp             CCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEG
T ss_pred             ccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcC
Confidence            77655556677777788899999999766677777788777889999999999999 99999988889999999999999


Q ss_pred             ccchhhHHHHHhcCCCCceeecccCC----CCCCCcCHHHHHHHHccChhhHHHHHhcccCChHHHHHHHhcCCCCceee
Q 008325          321 SIGDRGLGVVAFTCKELQELRVFPSG----VDNAAVTEEGLVAISAGCPKLHSLLYFCQQMTNAALITVAKNNSNFTRFR  396 (570)
Q Consensus       321 ~~~~~~~~~~~~~~~~L~~L~l~~~~----~~~~~l~~~~l~~l~~~~~~L~~Ll~~~~~l~~~~~~~l~~~~~~L~~L~  396 (570)
                      +.++.++..+...+++|++|++..++    .++..+++.++..+...|++|+.|...|+.+++.++..+...+++|+.|+
T Consensus       324 ~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~  403 (594)
T 2p1m_B          324 YIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFR  403 (594)
T ss_dssp             GGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEE
T ss_pred             ccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeE
Confidence            98888888888889999999994210    14778999999999888999999977899999999999988899999999


Q ss_pred             eeeecCCCCCCCCCCcchhhHHHHHhcCccCcEEecCCcccHHHHHHHHhcccccceeecccCCCChHHHHHHHhcCccC
Q 008325          397 LCILDREKPDPVTMQPLDEGFGAIVQSCKRLRRLSLSGLLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKL  476 (570)
Q Consensus       397 l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~L~~L~l~~~i~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L  476 (570)
                      +++++..+|..+++.+.+.++..++..+++|+.|++++.+++.++..++..+++|+.|++++|.+++.++..++.+|++|
T Consensus       404 L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L  483 (594)
T 2p1m_B          404 LCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSL  483 (594)
T ss_dssp             EEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTC
T ss_pred             eecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCc
Confidence            99654445668887777888999999999999999999999999999998899999999999999999999998899999


Q ss_pred             ceEEecCCCCChHHHHHHHhccccccEEEeecccCChhHHHHHHhhCCceEEEEeecCCccccccccccccceEEEEEec
Q 008325          477 RKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDDQMEFSLDDRQKVGKMYLYRTL  556 (570)
Q Consensus       477 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (570)
                      ++|++++|.+++.++...+.++++|+.|++++|+++.+|++.+...+|.++++++.++...+ ..++....++++.||++
T Consensus       484 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~  562 (594)
T 2p1m_B          484 RKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPD-SRPESCPVERVFIYRTV  562 (594)
T ss_dssp             CEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGG-GSCTTSBCSEEEEEECS
T ss_pred             CEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCccc-cccccchhhhhhhhhcc
Confidence            99999999999888877888899999999999999999999999999999999998765322 33466788899999999


Q ss_pred             CCCCCCCCCCcccC
Q 008325          557 VGPRKDAPDFVWTL  570 (570)
Q Consensus       557 ~~~~~~~~~~~~~~  570 (570)
                      .|+|.++|+|++++
T Consensus       563 ~~~~~~~p~~~~~l  576 (594)
T 2p1m_B          563 AGPRFDMPGFVWNM  576 (594)
T ss_dssp             SCSCSCCCTTEEEC
T ss_pred             CCCCCCCCCceEec
Confidence            99999999999875

PyMOL of 2p1m

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}	Back alignment and structure

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}	Back alignment and structure

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4	Back alignment and structure

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}	Back alignment and structure

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}	Back alignment and structure

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}	Back alignment and structure

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A	Back alignment and structure

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*	Back alignment and structure

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*	Back alignment and structure

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}	Back alignment and structure

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A	Back alignment and structure

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*	Back alignment and structure

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A	Back alignment and structure

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}	Back alignment and structure

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D	Back alignment and structure

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7	Back alignment and structure

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		570
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1fs1a1		41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	0.001

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 2e-05
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 5/91 (5%)

Query: 103 LEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIA---ANCRYLRELDL 159
           ++ L ++   +SD     L       + + L  C G T      I+        L EL+L
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNL 62

Query: 160 QEIEVDDNRGQWI-SCFPDSCTSLVSLNFSC 189
           +  E+ D     +          +  L+   
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

PyMOL of d1z7xw1

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		570
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.91
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.87
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.87
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.84
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.76
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.65
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.4
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.23
d1fs1a1		41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.18
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.91
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.86
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.85
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.82
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.79
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.76
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.7
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.68
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.66
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.64
d1nexb1		100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.6
d2ovrb1		102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.58
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.57
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.53
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.51
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	98.51
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.5
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.49
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.46
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.43
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	98.38
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	98.31
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.29
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.28
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	98.23
d1p22a1		118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.21
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	98.19
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	97.97
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.95
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.85
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.62
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	97.53
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	97.45
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.41
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.37
d2ifga3		156	High affinity nerve growth factor receptor, N-term	96.42
d2ifga3		156	High affinity nerve growth factor receptor, N-term	95.87

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.3e-22  Score=198.94  Aligned_cols=406  Identities=17%  Similarity=0.169  Sum_probs=223.7

Q ss_pred             CCCEEEeCCCccCHHHHHHHHhhCCCccEEEecCCCCCChHHHHHHH---HhCCCCCEEecccccccccccccccccc-C
Q 008325          102 GLEELRLKRMVVSDDCLELLSRSFVNFKSLVLVSCEGFTTDGLAAIA---ANCRYLRELDLQEIEVDDNRGQWISCFP-D  177 (570)
Q Consensus       102 ~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~  177 (570)
                      +|++|+++++.+++..+..+...++++++|+|.+| ++++.++..+.   ..+++|++|++++|.+++.+...+.... .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            35555555555555555555545555555555555 35554443332   4455555555555555544444333222 2


Q ss_pred             CCCcccEEEeccccCCCCHHH---HHHHHHhCCCCceeecCCCCCchh-H---HHHHhhC-CCceeecCcccccCCChHH
Q 008325          178 SCTSLVSLNFSCLKGEINLTA---LERLVARSPNLKSLRLNRAVPLDT-L---QKLLMRA-PQLVDLGIGSFVYDPSSEA  249 (570)
Q Consensus       178 ~~~~L~~L~l~~~~~~~~~~~---l~~l~~~~~~L~~L~l~~~~~~~~-l---~~~~~~~-~~L~~L~l~~~~~~~~~~~  249 (570)
                      ...+|++|+++++  .+++.+   +......+++|++|+++++.-... .   ...+... ............  .....
T Consensus        82 ~~~~L~~L~L~~n--~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~~  157 (460)
T d1z7xw1          82 PSCKIQKLSLQNC--CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS--LSAAS  157 (460)
T ss_dssp             TTCCCCEEECTTS--CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC--CBGGG
T ss_pred             CCCCCCEEECCCC--Cccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccc--cchhh
Confidence            2335555555544  233322   222233445555555555431111 1   1111111 011111111110  01122


Q ss_pred             HHHHHHHHhhcCCccccc-CCcccChhhHHhH----hhhCCCCCEEecCCCCCCChHH---HHHHHhcCCCCCEEEeccc
Q 008325          250 YIKLKATLVKCKSIRSLS-GFLEVVPCCLSAI----HPVCQNLTSLNLSYAPGIHGNE---LIKLIRFCRKLERLWILDS  321 (570)
Q Consensus       250 ~~~~~~~~~~~~~L~~L~-~~~~~~~~~l~~~----~~~~~~L~~L~l~~~~~l~~~~---l~~l~~~~~~L~~L~l~~~  321 (570)
                      .............++.+. ......+......    .........+++..+. ....+   ........+.++.+.+.++
T Consensus       158 ~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~~~~~~~l~~~~n  236 (460)
T d1z7xw1         158 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSN  236 (460)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred             hccccccccccccccccccccccccccccccccccccccccccccccccccc-ccchhhhcccccccccccccccchhhc
Confidence            223333333444444443 2222222222221    1222356667777665 33322   3334456677777777765


Q ss_pred             c-chhh----HHHHHhcCCCCceeecccCCCCCCCcCHHHHHHHHc---cChhhHHHHHhcccCChHHHHHHHh----cC
Q 008325          322 I-GDRG----LGVVAFTCKELQELRVFPSGVDNAAVTEEGLVAISA---GCPKLHSLLYFCQQMTNAALITVAK----NN  389 (570)
Q Consensus       322 ~-~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~l~~l~~---~~~~L~~Ll~~~~~l~~~~~~~l~~----~~  389 (570)
                      . .+.+    ........++++.++++     .+.+..........   ..+.++.+....+.+++.++..+..    ..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~l~~l~l~-----~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~  311 (460)
T d1z7xw1         237 KLGDVGMAELCPGLLHPSSRLRTLWIW-----ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPG  311 (460)
T ss_dssp             BCHHHHHHHHHHHHTSTTCCCCEEECT-----TSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTT
T ss_pred             cccccccchhhcccccccccccccccc-----cccccccccccccccccccccccccccccccccccccchhhccccccc
Confidence            2 2222    22333445678888887     44555554443332   2444444434455677776666543    34


Q ss_pred             CCCceeeeeeecCCCCCCCCCCcchhhH---HHHHhcCccCcEEecCC-cccHHHHHHHHh----cccccceeecccCCC
Q 008325          390 SNFTRFRLCILDREKPDPVTMQPLDEGF---GAIVQSCKRLRRLSLSG-LLTDQVFLYIGM----YAEQLEMLSIAFAGN  461 (570)
Q Consensus       390 ~~L~~L~l~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~L~~L~l~~-~i~~~~~~~l~~----~~~~L~~L~l~~~~i  461 (570)
                      +.|+.+.++.+      .++    +.+.   ..+...+++|++|+|++ .+++.++..++.    ..+.|++|++++|.+
T Consensus       312 ~~L~~l~l~~~------~l~----~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i  381 (460)
T d1z7xw1         312 CQLESLWVKSC------SFT----AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV  381 (460)
T ss_dssp             CCCCEEECTTS------CCB----GGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             ccccccccccc------chh----hhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCC
Confidence            57899988876      455    4443   34456778999999998 889988887764    356799999999999


Q ss_pred             ChHHHHHHHh---cCccCceEEecCCCCChHHHHHHHhcc----ccccEEEeecccCChhHHH---HHHhhCCceEE
Q 008325          462 SDKGMLYVLN---GCKKLRKLEIRDSPFGNTALLTDVGKY----ETMRSLWMSSCEVTLGGCQ---TLAKKMPRLNV  528 (570)
Q Consensus       462 ~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~i~~~~~~---~l~~~~p~~~~  528 (570)
                      ++.++.+++.   .+++|++|+|++|.+++.++..+.+.+    .+|+.|++.++.++.++.+   .+.+..|.+++
T Consensus       382 ~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~  458 (460)
T d1z7xw1         382 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV  458 (460)
T ss_dssp             CHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEE
T ss_pred             ChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence            9998877654   489999999999999998876665444    3799999999998765544   45667787764

PyMOL of d1z7xw1

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure