Citrus Sinensis ID: 008363

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------57
Protein Sequence
MSTEKASSSNSSLKTPVRSRKLKSKARVEKHSHDICQPLSNVNEDEEPPTANHQIYHGSERDSAVCDVLGDFLSKPSLVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKTVHDAGERSMRSFLIESNSSKSPNDKKGKNVLSSDNQPLALCYGNEPGEESEGDMTLAALKNKQKPKSRSSSKKKEEDDQAMVCIDEEATDIQGKENEKGEAGNGIEVLPPKVVAMHRVRWNMNKGSERWLCYGGAGGIIRCQEIRVPDIDKKMGKKIQK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccEEEEEEEEccccccccccccccEEEEEEccccEEEEEccccccHHHHHccccccccccccccccccccccEEEEccccccEEEEEEcccccccEEEEEEcccEEEEEEcccccccccccccEEEEcccccEEEEEEccccccccccEEEEEEccccEEEEEcccccccEEEEccccccEEEEEEccccccEEEEEccccEEEEEcccccccccccccccccccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEcccccccccccccccccEEEEEEcccccEEEEcccccccccccccccccccccEEEEEEccccEEEcccccccEEEEccccccEEEEccccccccccccHHHHHHcccccccccccccccccccccEEEccccccccccccccccccccccEEccccEEEEEEEEEEcccccccEEEEEccccEEEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEccccccEEEEEEccccccccEEcccccccccccccccccccccccEEEEccccccHHHHHHHcccccccccccccccccccccEEEEEEEEcccEEEEEEEccccccccccccccEEEEEEEcccEEEEEEcccHHHHHHHHHccccccccccEEEEEEEEEEcEEEccccccccEEEEccccccccEEEEEccccEEEEEEEcccccccccccEEEEEcccccEEEEEEcccccccccccEEEEEccccEEEEEccccccccHcccccccEEEEHcccccccEEEEEEccccEEEEEcHHHHcccccccccccccccccEEEEEccccEEEEEEEcccccEEEEEEccccEEEEEEcHHHHccccccccccEEEEccccccccEEEEccccccccccccccccccccHHHHHcccccccccccccccccccccccccccEEcccccccccccccHHHHcccccccccccccccccccccccEEEEEccccccccccccccccccccccccccEEEEEEEEEcccccccEEEEEcccccEEEEEEEEcccccHHHHHHHHc
Coil and Loop (DISEMBL)
mstekasssnsslktpvrsrkLKSKARVEkhshdicqplsnvnedeepptanhqiyhgserdsaVCDVLgdflskpslvscpipkdialPRVVLCLAHngkvawdvkwkpynavdckckqRLGYLAVLLGngslevwevPLLRTMKAIYLSsmkegtdprfvklepvfrcsmlkcggtqsipltmewstspphdyllagchDGTVALWKFVasdssidsrpllcfsadtlpiravswapaesdsdsaNVILTAghgglkfwdirdpfrplwdihpapkfiygldwlpdpgcvilsfdDGAMRIVSLLKAaydvpatgkpfagtkqqglhlvncsSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVekdhsrnrpmhflcgsvtedesaitvntpldntpvplkktvhdagersMRSFLiesnsskspndkkgknvlssdnqplalcygnepgeesegdMTLAALKnkqkpksrssskkkeeddqaMVCIdeeatdiqgkenekgeagngievlppKVVAMHRVRWNMnkgserwlcyggaggiircqeirvpdidkkmgkkiqk
Flexible Loop (DISEMBL)
mstekasssnsslktpvrsrklkskarvekhshdicqplsnvnedeeppTANHQIYHGSERDSAVCDVLGDFLSKPSLVSCPIPKDIALPRVVLCLAHNGkvawdvkwkpyNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLssmkegtdprFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWapaesdsdsANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKavekdhsrnrpMHFLCGSVTEDESAITvntpldntpvplKKTVHDAGERSMRSFliesnsskspndkkgknvlssdnqpLALCYGNEPGEESEGDMTLAALknkqkpksrssskkkeeddqamvcideeatdiqgkenekgeagngievlppKVVAMHRVRWNMNKGSERWLCYGGaggiircqeirvpdidkkmgkkiqk
Low Complexity Region (SEG)
MSTEKASSSNSSLKTPVRSRKLKSKARVEKHSHDICQPLSNVNEDEEPPTANHQIYHGSERDSAVCDVLGDFLSKPSLVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKTVHDAGERSMRSFLIESNSSKSPNDKKGKNVLSSDNQPLALCYGNEPGEESEGDMTLAALknkqkpksrssskkkEEDDQAMVCIDEEATDIQgkenekgeagngieVLPPKVVAMHRVRWNMNKGSERWLCYGGAGGIIRCQEIRVPDIDKKMGKKIQK
Disordered region (IsUnstruct)
**************************************************************SAVCDVLGDFLSKPSLVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA*****SANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV*********MHFLCGSVT******************************************************************************************************************************IEVLPPKVVAMHRVRWNMNKGSERWLCYGGAGGIIRCQEIRVPD***********
Disordered Region (DISOPRED)
************************************************************R*SAVCDVLGDFLSKP***********ALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKTVHDAGERSMRSFLI**************NVLSSDNQPLALCYGNEPGEESEGDMTLAAL*******************************************NGIEVLPPKVVAMHRVRWNMNKGSERWLCYGGAGGIIRCQEIRVPDID*********
Disordered Region (DISEMBL)
*******************************SHDICQPLSNVNEDEEPPTANHQIYHGSERDSAVCDVLGDFLSKPSLVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKTVHDAGERSMRSFLIESN************VLSSDNQPLALCYGNEPGEESEGDMTLAAL********************AMVCIDEEATDIQGKENEKGEAGNGIEVLPPKVVAMHRVRWNMNKGSERWLCYGGAGGIIRCQEIRVPDIDK********
Disordered Region (DISPRO)
**********SSLKTPVRSR*****ARVEKHSHDICQPLSNVNEDEEPPTANHQIYHGSERDSAVCDVLGDFLSKPSLVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKTVHDAGERSMRSFLIES*SS******KGKN*****NQPLA*CYGN**********************************QAM***DEE****************GIEVLPPKVVAMHRVRWNMNKGSERWLCYGGAGGIIRCQEIRVPDIDKKMGKKIQK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTEKASSSNSSLKTPVRSRKLKSKARVEKHSHDICQPLSNVNEDEEPPTANHQIYHGSERDSAVCDVLGDFLSKPSLVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKTVHDAGERSMRSFLIESNSSKSPNDKKGKNVLSSDNQPLALCYGNEPGEESEGDMTLAALKNKQKPKSRSSSKKKEEDDQAMVCIDEEATDIQGKENEKGEAGNGIEVLPPKVVAMHRVRWNMNKGSERWLCYGGAGGIIRCQEIRVPDIDKKMGKKIQK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	568	2.2.26 [Sep-21-2011]
Q8BL74	907	General transcription fac	yes	no	0.522	0.327	0.223	4e-10
Q8WUA4	911	General transcription fac	yes	no	0.542	0.338	0.216	7e-09
Q5RDC3	911	General transcription fac	yes	no	0.542	0.338	0.216	1e-08

>sp|Q8BL74|TF3C2_MOUSE General transcription factor 3C polypeptide 2 OS=Mus musculus GN=Gtf3c2 PE=1 SV=2

 Score = 67.0 bits (162), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 86/385 (22%), Positives = 143/385 (37%), Gaps = 88/385 (22%)

Query: 183 LTMEWSTSPPHDYLLAGCHDGTVALW---------KFVASDSSIDSRPLLCFSADTLPIR 233
           L++ W  + PH +L AG ++G V  W         +   SD S+   P  CF A    +R
Sbjct: 554 LSLAWMPTRPHHHLAAGYYNGMVVFWNLPTNSPLQRIRLSDGSLKLYPFQCFLAHDQAVR 613

Query: 234 AVSWAPAESDSDSANVILTAGHG-GLKFWDIRDPFRPLWDIHPAPKFIYG-LDWLPDPGC 291
            + W  A S     + +++AG    +KFWD+R P+ P+  I    +F+   L WL     
Sbjct: 614 TIQWCKANS-----HFLVSAGSDRKIKFWDLRRPYEPINCIK---RFLSTELSWLLPYNG 665

Query: 292 VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVA 351
           V ++ D+          A+Y +       AG      +        +WS+  S   G VA
Sbjct: 666 VTVAQDN--------CYASYGLCGIHYIDAGYLGFKAYFTAPRKGTVWSLSGSDWLGTVA 717

Query: 352 YCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKTVH 411
                G +        A+  D + N                I V  P +    P+ K   
Sbjct: 718 AGDISGEL------IAAILPDMASN---------------PINVKKPAERR-FPIYKADL 755

Query: 412 DAGERSMRSFLIESNSSKSPNDKKGKNVLSSDNQPLALCYGNEPGEESEGDMTLAALKN- 470
              + S       S SS++PN  K +    + N    L            D  L++  N 
Sbjct: 756 IPYQDSPEDQDYSSTSSETPNPPKARTYTETINHHYLLFQ----------DTDLSSFHNL 805

Query: 471 -KQKPKSRSSSKKKEEDDQAMVCIDEEATDIQGKENEKGEAGNGIEVLPPKVVAMHRVRW 529
            +++P  R     +E +  + +C+D                         ++ A+H+VR+
Sbjct: 806 LRREPMLR----MQEGEGHSQLCLDRL-----------------------QLEAIHKVRF 838

Query: 530 NMNKGSERWLCYGGAGGIIRCQEIR 554
           + N  S  WL  GG  G++R   +R
Sbjct: 839 SPNLDSYGWLVSGGQSGLVRIHFVR 863

Required for RNA polymerase III-mediated transcription. Component of TFIIIC that initiates transcription complex assembly on tRNA and is required for transcription of 5S rRNA and other stable nuclear and cytoplasmic RNAs. May play a direct role in stabilizing interactions of TFIIIC2 with TFIIIC1.
Mus musculus (taxid: 10090)

>sp|Q8WUA4|TF3C2_HUMAN General transcription factor 3C polypeptide 2 OS=Homo sapiens GN=GTF3C2 PE=1 SV=2

 Score = 62.8 bits (151), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 86/398 (21%), Positives = 147/398 (36%), Gaps = 90/398 (22%)

Query: 183 LTMEWSTSPPHDYLLAGCHDGTVALW---------KFVASDSSIDSRPLLCFSADTLPIR 233
           L++ W  + PH +L AG ++G V  W         +   SD S+   P  CF A    +R
Sbjct: 558 LSLAWMPTRPHQHLAAGYYNGMVVFWNLPTNSPLQRIRLSDGSLKLYPFQCFLAHDQAVR 617

Query: 234 AVSWAPAESDSDSANVILTAGHG-GLKFWDIRDPFRPLWDIHPAPKFIYG-LDWLPDPGC 291
            + W  A S     + +++AG    +KFWD+R P+ P+  I    +F+   L WL     
Sbjct: 618 TLQWCKANS-----HFLVSAGSDRKIKFWDLRRPYEPINSIK---RFLSTELAWLLPYNG 669

Query: 292 VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVA 351
           V ++ D+          A+Y +       AG      +        +WS+  S   G +A
Sbjct: 670 VTVAQDN--------CYASYGLCGIHYIDAGYLGFKAYFTAPRKGTVWSLSGSDWLGTIA 721

Query: 352 YCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKTVH 411
                G +        A+  D + N                I V  P++    P+ K   
Sbjct: 722 AGDISGEL------IAAILPDMALN---------------PINVKRPVERR-FPIYKADL 759

Query: 412 DAGERSMRSFLIESNSSKSPNDKKGKNVLSSDNQPLALCYGNEPGEESEGDMTLAALKN- 470
              + S       S SS  PN  K +    + N    L            D  L +  + 
Sbjct: 760 IPYQDSPEGPDHSSASSGVPNPPKARTYTETVNHHYLLFQ----------DTDLGSFHDL 809

Query: 471 -KQKPKSRSSSKKKEEDDQAMVCIDEEATDIQGKENEKGEAGNGIEVLPPKVVAMHRVRW 529
            +++P  R     +E +  + +C+D                         ++ A+H+VR+
Sbjct: 810 LRREPMLR----MQEGEGHSQLCLDRL-----------------------QLEAIHKVRF 842

Query: 530 NMNKGSERWLCYGGAGGIIRCQEIRVPDIDKKMGKKIQ 567
           + N  S  WL  GG  G++R   +R   +   +G ++Q
Sbjct: 843 SPNLDSYGWLVSGGQSGLVRIHFVR--GLASPLGHRMQ 878

Required for RNA polymerase III-mediated transcription. Component of TFIIIC that initiates transcription complex assembly on tRNA and is required for transcription of 5S rRNA and other stable nuclear and cytoplasmic RNAs. May play a direct role in stabilizing interactions of TFIIIC2 with TFIIIC1.

Homo sapiens (taxid: 9606)

>sp|Q5RDC3|TF3C2_PONAB General transcription factor 3C polypeptide 2 OS=Pongo abelii GN=GTF3C2 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 86/398 (21%), Positives = 146/398 (36%), Gaps = 90/398 (22%)

Query: 183 LTMEWSTSPPHDYLLAGCHDGTVALW---------KFVASDSSIDSRPLLCFSADTLPIR 233
           L++ W  + PH +L AG ++G V  W         +   SD S+   P  CF A    +R
Sbjct: 558 LSLAWMPTRPHQHLAAGYYNGMVVFWNLPTNSPLQRIRLSDGSLKLYPFQCFLAHDQAVR 617

Query: 234 AVSWAPAESDSDSANVILTAGHG-GLKFWDIRDPFRPLWDIHPAPKFIYG-LDWLPDPGC 291
            + W  A S     + + +AG    +KFWD+R P+ P+  I    +F+   L WL     
Sbjct: 618 TLQWCKANS-----HFLASAGSDRKIKFWDLRRPYEPINSIK---RFLSTELAWLLPYNG 669

Query: 292 VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVA 351
           V ++ D+          A+Y +       AG      +        +WS+  S   G +A
Sbjct: 670 VTVAQDN--------CYASYGLCGIHYIDAGYLGFKAYFTAPRKGTVWSLSGSDWLGTIA 721

Query: 352 YCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKTVH 411
                G +        A+  D + N                I V  P++    P+ K   
Sbjct: 722 AGDISGEL------IAAILPDMALN---------------PINVKRPVERR-FPIYKADL 759

Query: 412 DAGERSMRSFLIESNSSKSPNDKKGKNVLSSDNQPLALCYGNEPGEESEGDMTLAALKN- 470
              + S       S SS  PN  K +    + N    L            D  L +  + 
Sbjct: 760 IPYQDSPEGPDHSSASSGVPNPPKARTYTETVNHHYLLFQ----------DTDLGSFHDL 809

Query: 471 -KQKPKSRSSSKKKEEDDQAMVCIDEEATDIQGKENEKGEAGNGIEVLPPKVVAMHRVRW 529
            +++P  R     +E +  + +C+D                         ++ A+H+VR+
Sbjct: 810 LRREPMLR----MQEGEGHSQLCLDRL-----------------------QLEAIHKVRF 842

Query: 530 NMNKGSERWLCYGGAGGIIRCQEIRVPDIDKKMGKKIQ 567
           + N  S  WL  GG  G++R   +R   +   +G ++Q
Sbjct: 843 SPNLDSYGWLVSGGQSGLVRIHFVR--GLASPLGHRMQ 878

Required for RNA polymerase III-mediated transcription. Component of TFIIIC that initiates transcription complex assembly on tRNA and is required for transcription of 5S rRNA and other stable nuclear and cytoplasmic RNAs. May play a direct role in stabilizing interactions of TFIIIC2 with TFIIIC1.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	568
255585727	847	DNA binding protein, putative [Ricinus c	0.850	0.570	0.661	0.0
359487362	942	PREDICTED: uncharacterized protein LOC10	0.968	0.583	0.582	1e-177
297736229	834	unnamed protein product [Vitis vinifera]	0.945	0.643	0.568	1e-173
356537067	1121	PREDICTED: uncharacterized protein LOC10	0.950	0.481	0.550	1e-170
224100307	437	predicted protein [Populus trichocarpa]	0.764	0.993	0.674	1e-169
18394746	815	transducin/WD-40 repeat-containing prote	0.894	0.623	0.556	1e-168
297844924	1262	predicted protein [Arabidopsis lyrata su	0.894	0.402	0.532	1e-166
449523583	983	PREDICTED: uncharacterized LOC101210135	0.885	0.511	0.574	1e-165
449463006	952	PREDICTED: uncharacterized protein LOC10	0.885	0.528	0.574	1e-165
224086793	591	predicted protein [Populus trichocarpa]	0.843	0.810	0.525	1e-138

>gi|255585727|ref|XP_002533545.1| DNA binding protein, putative [Ricinus communis] gi|223526581|gb|EEF28835.1| DNA binding protein, putative [Ricinus communis]

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/488 (66%), Positives = 384/488 (78%), Gaps = 5/488 (1%)

Query: 81  CPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVP 140
           C IPKD+ALPRVVLC+AH+ KV WDVKW+P    D KC+ R+GYLAVLLGNG LEVW+VP
Sbjct: 361 CSIPKDVALPRVVLCIAHDAKVVWDVKWQPCYGSDSKCQHRMGYLAVLLGNGFLEVWDVP 420

Query: 141 LLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC 200
           L    K IY SS +EGTDPR+VKL+PVFR S+ K G  QSIPLT+EWSTS PHDYLLAGC
Sbjct: 421 LPHVTKVIYSSSNREGTDPRYVKLKPVFRGSIAKRGEIQSIPLTVEWSTSYPHDYLLAGC 480

Query: 201 HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKF 260
           HDGTVALWKF AS  S D+RPLLCFSADT+ IRAV+WAPA SD +S NVI+T GHGGLKF
Sbjct: 481 HDGTVALWKFSASGLSGDTRPLLCFSADTVAIRAVAWAPAGSDQESDNVIVTGGHGGLKF 540

Query: 261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPF 320
           WDIRDPFRPLWD+HPAPKFIY LDWLPDP C+ILSFDDG +R++SL+KAAYD    G+P 
Sbjct: 541 WDIRDPFRPLWDLHPAPKFIYSLDWLPDPRCIILSFDDGTLRLLSLVKAAYDAHVNGQPS 600

Query: 321 AGTKQQGL-HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPM 379
            G KQQG+ ++ N SSFAIWSVQVSR TG+ AY SADGTV RFQLT KAVEK  SR+R  
Sbjct: 601 VGPKQQGIQNIFNFSSFAIWSVQVSRKTGLAAYSSADGTVCRFQLTTKAVEKSPSRHRTP 660

Query: 380 HFLCGSVTEDESAITVNTPLDNTPVPLKKTVHDAGE--RSMRSFLIESNSSKSPNDKKGK 437
           HF+ GS+++DE+AITVN PL +TP+ LKK V+  G+  RSMRS L+ESN +K  N  K  
Sbjct: 661 HFMVGSLSKDEAAITVNIPLPDTPLTLKKPVNTVGDNPRSMRS-LLESNQTKRANINKA- 718

Query: 438 NVLSSDNQPLALCYGNEPGEESEGDMTLAALKNKQKPKSRSSSKKKEEDDQAMVCIDEEA 497
           N L++DNQ LALC  N+PG +SE D +LAA +++ K KS+S SKK   +D A+VCIDE  
Sbjct: 719 NALAADNQLLALCDVNDPGVQSESDESLAAFRSRTKSKSKSISKKMTGEDLALVCIDEGQ 778

Query: 498 TDIQGKENEKGEAGNGIEVLPPKVVAMHRVRWNMNKGSERWLCYGGAGGIIRCQEIRVPD 557
            + + KE  K E  N IEV+PPK++AMHRVRWN+NKGSERWLC GGA GI+RCQEI + D
Sbjct: 779 NNRRQKEIVKAEVANEIEVIPPKIIAMHRVRWNINKGSERWLCSGGAAGIVRCQEIILSD 838

Query: 558 IDKKMGKK 565
            DK + +K
Sbjct: 839 TDKLLARK 846

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487362|ref|XP_003633578.1| PREDICTED: uncharacterized protein LOC100852537 [Vitis vinifera]

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 333/572 (58%), Positives = 412/572 (72%), Gaps = 22/572 (3%)

Query: 7   SSSNSSLKTPVRSRKLKSKARVEKHSHDICQPLSNVNEDEEPPTANHQIYHGSERDSAVC 66
           ++ NS+ KTP   R+ K K RV  +S +   PLS  N+++E   AN Q +  SE    + 
Sbjct: 380 AACNSAPKTPTERRRSKRKTRVVNYSDESSLPLSTQNKNKESSPANFQTHINSEEHPMMS 439

Query: 67  --DVLGDFLSKPSLVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGY 124
             D+  +     S  +  IP D+ALPR+VLCLAHNGKVAWDVKW+P +  D +CK R+GY
Sbjct: 440 SDDMPQNSSFGISSANDSIPNDVALPRIVLCLAHNGKVAWDVKWRPSSMSDLECKHRMGY 499

Query: 125 LAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT 184
           LAVLLGNGSLEVWEVP L T+K IY SS KEGTDPRF+KL+PVFRCS LK G  QSIPLT
Sbjct: 500 LAVLLGNGSLEVWEVPSLHTIKVIYSSSKKEGTDPRFIKLKPVFRCSNLKYGDRQSIPLT 559

Query: 185 MEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDS 244
           +EWS   PHD ++AGCHDGTVALWKF A+ S  D+RPLLCFSADT+PIRA++WAP E+D 
Sbjct: 560 VEWSAFSPHDLIVAGCHDGTVALWKFSANGSFEDTRPLLCFSADTVPIRALAWAPVETDP 619

Query: 245 DSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIV 304
           +SAN+I+TAGH G+KFWDIRDPFRPLW+I+P  + IY +DWLPDP C+ILSFDDG +RI 
Sbjct: 620 ESANIIVTAGHAGVKFWDIRDPFRPLWEINPVRRVIYSVDWLPDPRCIILSFDDGTLRIF 679

Query: 305 SLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL 364
           SL K A DVP TGKPF+GT+Q GL   +CS F IWSVQVSR TG+ AYCSADGTV +FQL
Sbjct: 680 SLAKIANDVPVTGKPFSGTQQPGLICYSCSPFPIWSVQVSRATGLAAYCSADGTVRQFQL 739

Query: 365 TAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKTVHDAGE--RSMRSFL 422
           T KAVEKD SRN+  HFLCGS+TED S +T+NTPL   P  +KK ++  G+  RS+R  +
Sbjct: 740 TIKAVEKD-SRNKAPHFLCGSLTEDNSVLTINTPLSTIPFVVKKALNQWGDTPRSIRG-I 797

Query: 423 IESNSSKSPNDKKGKNVLSSDNQPLALCYGNEPGE---------ESEGDMTLAALKNKQK 473
            ESN +K  N++K      S++QPL LC  ++  +         E  G  T AA K KQK
Sbjct: 798 SESNQAKRVNNQK------SNDQPLDLCEDDDDDDDDDDNDSSIEVSGS-TKAASKRKQK 850

Query: 474 PKSRSSSKKKEEDDQAMVCIDEEATDIQGKENEKGEAGNGIEVLPPKVVAMHRVRWNMNK 533
            KS+SSSKK  + DQA +C  EEA +++ KE+ K E GN IEV P K+VA+HRVRWNMNK
Sbjct: 851 TKSKSSSKKNPKKDQAALCSYEEAENLENKEDRKEEGGNEIEVFPSKIVALHRVRWNMNK 910

Query: 534 GSERWLCYGGAGGIIRCQEIRVPDIDKKMGKK 565
           GSE WLCYGGA GI+RCQ+I    + K + K+
Sbjct: 911 GSEGWLCYGGAAGIVRCQKITAGVLKKDLVKR 942

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736229|emb|CBI24867.3| unnamed protein product [Vitis vinifera]

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 327/575 (56%), Positives = 404/575 (70%), Gaps = 38/575 (6%)

Query: 4   EKASSSNSSLKTPVRSRKLKSKARVEKHSHDICQPLSNVNEDEEPPTANHQIYHGSERDS 63
           E A+    + KTP   R+ K K RV  +S +   PLS  N+++E   AN Q +  SE   
Sbjct: 285 EAANKQEKAPKTPTERRRSKRKTRVVNYSDESSLPLSTQNKNKESSPANFQTHINSEEHP 344

Query: 64  AVC--DVLGDFLSKPSLVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQR 121
            +   D+  +     S  +  IP D+ALPR+VLCLAHNGKVAWDVKW+P +  D +CK R
Sbjct: 345 MMSSDDMPQNSSFGISSANDSIPNDVALPRIVLCLAHNGKVAWDVKWRPSSMSDLECKHR 404

Query: 122 LGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181
           +GYLAVLLGNGSLEVWEVP L T+K IY SS KEGTDPRF+KL+PVFRCS LK G  QSI
Sbjct: 405 MGYLAVLLGNGSLEVWEVPSLHTIKVIYSSSKKEGTDPRFIKLKPVFRCSNLKYGDRQSI 464

Query: 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDS---------SIDSRPLLCFSADTLPI 232
           PLT+EWS   PHD ++AGCHDGTVALWKF A+ S         + D+RPLLCFSADT+PI
Sbjct: 465 PLTVEWSAFSPHDLIVAGCHDGTVALWKFSANGSFEGSGTMQVTSDTRPLLCFSADTVPI 524

Query: 233 RAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCV 292
           RA++WAP E+D +SAN+I+TAGH G+KFWDIRDPFRPLW+I+P  + IY +DWLPDP C+
Sbjct: 525 RALAWAPVETDPESANIIVTAGHAGVKFWDIRDPFRPLWEINPVRRVIYSVDWLPDPRCI 584

Query: 293 ILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAY 352
           ILSFDDG +RI SL K A DVP TGKPF+GT+Q GL   +CS F IWSVQVSR TG+ AY
Sbjct: 585 ILSFDDGTLRIFSLAKIANDVPVTGKPFSGTQQPGLICYSCSPFPIWSVQVSRATGLAAY 644

Query: 353 CSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKTVHD 412
           CSADGTV +FQLT KAVEKD SRN+  HFLCGS+TED S +T+NTPL   P  +KK ++ 
Sbjct: 645 CSADGTVRQFQLTIKAVEKD-SRNKAPHFLCGSLTEDNSVLTINTPLSTIPFVVKKALNQ 703

Query: 413 AGE--RSMRSFLIESNSSKSPNDKKGKNVLSSDNQPLALCYGNEPGEESEGDMTLAALKN 470
            G+  RS+R  + ESN +K  N++K      S++QPL L                 + K 
Sbjct: 704 WGDTPRSIRG-ISESNQAKRVNNQK------SNDQPLDL-----------------SSKR 739

Query: 471 KQKPKSRSSSKKKEEDDQAMVCIDEEATDIQGKENEKGEAGNGIEVLPPKVVAMHRVRWN 530
           KQK KS+SSSKK  + DQA +C  EEA +++ KE+ K E GN IEV P K+VA+HRVRWN
Sbjct: 740 KQKTKSKSSSKKNPKKDQAALCSYEEAENLENKEDRKEEGGNEIEVFPSKIVALHRVRWN 799

Query: 531 MNKGSERWLCYGGAGGIIRCQEIRVPDIDKKMGKK 565
           MNKGSE WLCYGGA GI+RCQ+I    + K + K+
Sbjct: 800 MNKGSEGWLCYGGAAGIVRCQKITAGVLKKDLVKR 834

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537067|ref|XP_003537052.1| PREDICTED: uncharacterized protein LOC100816953 [Glycine max]

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 312/567 (55%), Positives = 395/567 (69%), Gaps = 27/567 (4%)

Query: 3    TEKASSSNSSLKTPVRSRKLK-SKARVE-KHSHDICQPLSNVNEDEEPPTANHQIYHGSE 60
            T++A S+ +++ T ++S  LK +   +E ++S D  QPL   NE      ANHQ +   E
Sbjct: 577  TKEAVSACNTISTTLKSSGLKINHTEMEGRYSQDRSQPLQYENE------ANHQPHWSFE 630

Query: 61   RDSAVCDVLGDFLSKPSLVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQ 120
                        L  P   +C IP+D+ LPRVV CLAHNGKVAWDVKW+P N  D  CK 
Sbjct: 631  ------------LEAPP-ATCSIPEDVTLPRVVSCLAHNGKVAWDVKWRPTNISDSFCKH 677

Query: 121  RLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQS 180
            R+G+LAVLLGNGSLEVWEVPL   ++AIY+   KEGTDPRF+KLEPVF+CSMLK GG QS
Sbjct: 678  RMGHLAVLLGNGSLEVWEVPLPHVLRAIYMH--KEGTDPRFIKLEPVFKCSMLKRGGLQS 735

Query: 181  IPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA 240
            IPLT+EWS +PPHDYLLAGCHDGTVALWKF  S SS  ++P+L F  DT+PIR V+WAP 
Sbjct: 736  IPLTVEWSVTPPHDYLLAGCHDGTVALWKFCTSSSSKYTKPVLIFGGDTVPIRTVAWAPF 795

Query: 241  ESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGA 300
            E D +S+N+I+TAGH GLKFWD+R+PFRPL  ++P P+ IY LDWL +P C+I+SF+DG 
Sbjct: 796  EGDPESSNIIVTAGHEGLKFWDLRNPFRPLRSLNPMPRIIYSLDWLSNPSCIIMSFEDGT 855

Query: 301  MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVH 360
            MR +SL+KAA D+P TG+ ++G KQ GLH    SSFAIWSVQVSRLTGMVAYC  DG V 
Sbjct: 856  MRTISLVKAANDLPVTGEIYSGKKQPGLHGSAYSSFAIWSVQVSRLTGMVAYCGVDGAVI 915

Query: 361  RFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKTVHDAG-ERSMR 419
            RFQLT K+VE DHSRNR   FLCGSVTE++S + +NTPL + P   KK         S R
Sbjct: 916  RFQLTTKSVETDHSRNRSRRFLCGSVTEEDSTLIINTPLSDAPFQWKKPPEKGRCAESFR 975

Query: 420  SFLIESNSSKSPNDKKGKNVLSSDNQPLALCYGNEPGEESEGDMTLAALKNKQKPKSRSS 479
              L +SN  +S +++  +   + D+Q LA+  G + G ES  +  L ++K  ++PK  S 
Sbjct: 976  DLLAKSNPFRSASNQMAE-TSNPDSQTLAIGAGEDVGLESGSEEALCSVKQPKRPKLNSG 1034

Query: 480  SKKKEEDDQAMVCIDEEATDIQGK-ENEKGEAGNGIEVLPPKVVAMHRVRWNMNKGSERW 538
             KKK E   A+VC D++A  I  + +NEK + GN  E  PPKV A+HRVRWNMNKGSERW
Sbjct: 1035 RKKKPE-GLALVCGDDDAPPITPEADNEKSDFGNIPETFPPKVAALHRVRWNMNKGSERW 1093

Query: 539  LCYGGAGGIIRCQEIRVPDIDKKMGKK 565
            LC+GGA G++RCQEI   +IDK+   K
Sbjct: 1094 LCFGGACGLVRCQEIVYSNIDKRWALK 1120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100307|ref|XP_002311825.1| predicted protein [Populus trichocarpa] gi|222851645|gb|EEE89192.1| predicted protein [Populus trichocarpa]

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 301/446 (67%), Positives = 358/446 (80%), Gaps = 12/446 (2%)

Query: 122 LGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181
           +GYLAVLLGNGSLEVW+VPL   MK++Y SS  EGTDPRFVK++PVFRCS LKCGG QSI
Sbjct: 1   MGYLAVLLGNGSLEVWDVPLPHAMKSVYSSSNLEGTDPRFVKIKPVFRCSTLKCGGIQSI 60

Query: 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAE 241
           PL +EWSTS PHDYLLAGCHDGTVALWKF AS +S D+RPLLCFSADT+PIRA++W P+E
Sbjct: 61  PLAVEWSTSYPHDYLLAGCHDGTVALWKFSASGASGDTRPLLCFSADTVPIRAIAWVPSE 120

Query: 242 SDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAM 301
           SD +S N+ILTAGH GLKFWDIRDPFRPLWD+HPAPK IY LDWLPDP C+ILSFDDG M
Sbjct: 121 SDQESPNLILTAGHLGLKFWDIRDPFRPLWDLHPAPKLIYSLDWLPDPRCIILSFDDGTM 180

Query: 302 RIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHR 361
           R++SL +AAYD    G+P  G KQ G+H+VNCSSFAIWSVQVSRLTGMVAYCSADGTV R
Sbjct: 181 RLLSLARAAYDAAVNGQPSVGPKQLGMHVVNCSSFAIWSVQVSRLTGMVAYCSADGTVCR 240

Query: 362 FQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKTVHDAGE--RSMR 419
           FQLT KAVEKD SR+R  HF CGS++EDESAI V TPL +TP+PLKK V+D G   +S +
Sbjct: 241 FQLTTKAVEKDPSRHRAPHFGCGSLSEDESAIIVGTPLPDTPLPLKKPVNDVGNNPKSKQ 300

Query: 420 SFLIESNSSKSPNDKKGKNVLSSDNQPLALCYGNEPGEESEGDMTLAALKNKQKPKSRSS 479
              + + ++K P         +SD+ PLALCYG++PG +   D TL A K+K+KPKS+S 
Sbjct: 301 RLSVSNKAAKIP---------TSDDPPLALCYGDDPGMDHGSDETLTATKSKRKPKSKSG 351

Query: 480 SKKKEEDDQAMVCIDEEATDIQGKENEKGEAGNGIEVLPPKVVAMHRVRWNMNKGSERWL 539
           SK+ E +DQA+VCID+E  D++ K   K  AGN +E +PPK+VAMHRVRWNMNKGSERWL
Sbjct: 352 SKQMEGEDQALVCIDDE-QDVKQKGGGKEGAGNVVESIPPKMVAMHRVRWNMNKGSERWL 410

Query: 540 CYGGAGGIIRCQEIRVPDIDKKMGKK 565
           C GGA GI+RCQEI++ D D  + +K
Sbjct: 411 CSGGAAGIVRCQEIKMFDADICLARK 436

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394746|ref|NP_564086.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|334182693|ref|NP_001185037.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|332191737|gb|AEE29858.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|332191738|gb|AEE29859.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]

 Score =  599 bits (1544), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 308/553 (55%), Positives = 386/553 (69%), Gaps = 45/553 (8%)

Query: 7   SSSNSSLKTPVRSRKLKSKARVEKHSHDICQPLSNVNEDEEPPTANHQIYHGSERDSAVC 66
           SS N+++K PVR ++ K+K+  E      C P+               I   SE      
Sbjct: 292 SSDNANIKLPVRRKRQKTKSTEES-----CTPM---------------ILEYSE------ 325

Query: 67  DVLGDFLSKPSLVSCPIPKDI-ALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYL 125
             +G+  SKPS     I +DI ALPRVVLCLAHNGKV WD+KW+P  A D   K  +GYL
Sbjct: 326 -AVGNVPSKPS---SGISEDIVALPRVVLCLAHNGKVVWDMKWRPSYAGDSLNKHSMGYL 381

Query: 126 AVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTM 185
           AVLLGNGSLEVW+VP+ +   A+YLSS K  TDPRFVKL PVF+CS LKCG T+SIPLT+
Sbjct: 382 AVLLGNGSLEVWDVPMPKATSALYLSSKKAATDPRFVKLAPVFKCSNLKCGDTKSIPLTV 441

Query: 186 EWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSD 245
           EWST    D+LLAGCHDGTVALWKF  + SS D+RPLL FSADT PIRAV+WAP ESD +
Sbjct: 442 EWSTLGNPDFLLAGCHDGTVALWKFSTTKSSEDTRPLLFFSADTAPIRAVAWAPGESDQE 501

Query: 246 SANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVS 305
           SAN++ TAGH GLKFWD+RDPFRPLWD+HP P+FIY LDWL DP CV+LSFDDG +RI+S
Sbjct: 502 SANIVATAGHAGLKFWDLRDPFRPLWDLHPVPRFIYSLDWLQDPSCVLLSFDDGTLRILS 561

Query: 306 LLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365
           L+K AYDVPATG+P+  TKQQGL + NCS+F IWS+QVSRLTG+ AYC+ADG++  F+LT
Sbjct: 562 LVKVAYDVPATGRPYPNTKQQGLSVYNCSTFPIWSIQVSRLTGIAAYCTADGSIFHFELT 621

Query: 366 AKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKTVHDAGE--RSMRSFLI 423
            KAVEKD +RNR  H+LCG +T  +S   V++P+ + P+ LKK V + GE  R +RS L 
Sbjct: 622 TKAVEKD-TRNRTPHYLCGQLTMKDSTFIVHSPVPDIPIVLKKPVGETGEKQRCLRSLLN 680

Query: 424 ESNSSKSPNDKKGKNVLSSDNQPLALCYGNEPGEESEGDMTLAALKNKQKPKSRSSSKKK 483
           ES S  + N         SD QPLA  +  +PG ESE + T       +  K +++++ +
Sbjct: 681 ESPSRYASN--------VSDVQPLAFAHVEDPGLESESEGTNNKAAKSKAKKGKNNARAE 732

Query: 484 E-EDDQAMVCIDEEATDIQGKENEKGEAGNGI--EVLPPKVVAMHRVRWNMNKGSERWLC 540
           E E+ +A+VC+ E+  + +G+        NG+  E  PPK+VAMHRVRWNMNKGSERWLC
Sbjct: 733 EDENSRALVCVKEDGGEEEGRRKAASNNSNGMKAEGFPPKMVAMHRVRWNMNKGSERWLC 792

Query: 541 YGGAGGIIRCQEI 553
           YGGA GI+RCQEI
Sbjct: 793 YGGAAGIVRCQEI 805

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844924|ref|XP_002890343.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297336185|gb|EFH66602.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  592 bits (1527), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 314/590 (53%), Positives = 388/590 (65%), Gaps = 82/590 (13%)

Query: 2    STEKASSSNSSLKTPVRSRKLKSKARVEKHSHDICQPLSNVNEDEEPPTANHQIYHGSER 61
            S +  SS N+++K PVR ++ K+K   E      C+P+   N +                
Sbjct: 707  SGQVLSSENANIKLPVRRKRQKTKGTEES-----CKPMLLENSE---------------- 745

Query: 62   DSAVCDVLGDFLSKPSLVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQR 121
              AV +V G+        S  I + IALPRVVLCLAHNGKVAWD+KW+P  A D   K R
Sbjct: 746  --AVGNVPGE-------PSPGISQGIALPRVVLCLAHNGKVAWDMKWRPLYANDSLKKHR 796

Query: 122  LGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181
            +GYLAVLLGNGSLEVW+VP+ +    +YLSS K  TDPRFVKL PVF+CS LKCG T+SI
Sbjct: 797  MGYLAVLLGNGSLEVWDVPMPQATSTLYLSSKKAATDPRFVKLAPVFKCSNLKCGDTKSI 856

Query: 182  PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAE 241
            PLT+EWSTS   D+LLAGCHDGTVALWKF  + SS D+RPLL FSADT PIRAV+WAP E
Sbjct: 857  PLTVEWSTSGNPDFLLAGCHDGTVALWKFSTTKSSEDTRPLLFFSADTAPIRAVAWAPGE 916

Query: 242  SDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPG----------- 290
            SD +SAN++ TAGH GLKFWD+RDPFRPLWD+HP P+FIY LDWL DP            
Sbjct: 917  SDQESANIVATAGHAGLKFWDLRDPFRPLWDLHPVPRFIYSLDWLQDPKYQSLLYPQLII 976

Query: 291  --------------------CVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL 330
                                CV+LSFDDG +RI+SL+K AYDVPATG+P+  TKQQGL +
Sbjct: 977  QSLDQWFEVLIKYGVLNICRCVLLSFDDGTLRILSLVKVAYDVPATGRPYPNTKQQGLSV 1036

Query: 331  VNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDE 390
             NCS+F IWS+QVSRLTG+ AYC+ DG++  F+LT KAVEKD +RNR  HFLCG +T  +
Sbjct: 1037 YNCSTFPIWSIQVSRLTGIAAYCTGDGSIFHFELTTKAVEKD-TRNRTPHFLCGQLTMKD 1095

Query: 391  SAITVNTPLDNTPVPLKKTVHDAGE--RSMRSFLIESNSSKSPNDKKGKNVLSSDNQPLA 448
            S   V++P+ + P+ LKK V + GE  R +RS L E     SPN +   NV  SD QPLA
Sbjct: 1096 STFIVHSPVPDIPIVLKKPVGETGEKQRCLRSLLNE-----SPN-RYASNV--SDVQPLA 1147

Query: 449  LCYGNEPGEESEGDMTLAALKNKQKPKSRSSSKKK-----EEDDQAMVCIDEEATDIQGK 503
              +  +PG ESE + T     N + PKS+S    K     +E+ +A+VC+ E+  + + K
Sbjct: 1148 FGHEEDPGLESEFEGT-----NNKAPKSKSKKGTKNIGEEDENSRALVCVKEDGGEGRRK 1202

Query: 504  ENEKGEAGNGIEVLPPKVVAMHRVRWNMNKGSERWLCYGGAGGIIRCQEI 553
            E      G  +E  PPK+VAMHRVRWNMNKGSERWLCYGGA GI+RCQEI
Sbjct: 1203 EASNNNNGTKVEGFPPKLVAMHRVRWNMNKGSERWLCYGGAAGIVRCQEI 1252

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523583|ref|XP_004168803.1| PREDICTED: uncharacterized LOC101210135 [Cucumis sativus]

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 300/522 (57%), Positives = 370/522 (70%), Gaps = 19/522 (3%)

Query: 59  SERDSAVC-DVLGDFLSKPSLVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCK 117
           S  D+ +C D+  + +   S +   IP+ +ALPRVVLCLAHNGKVAWD+KWKP NA    
Sbjct: 465 SGEDNLLCKDISENVVLDASSIEFSIPESVALPRVVLCLAHNGKVAWDLKWKPMNACTDN 524

Query: 118 CKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGG 177
           CK R+GYLAVLLGNGSLEVWEVP    +KAIY     EGTDPRF+KL+P+FRCS L+   
Sbjct: 525 CKHRMGYLAVLLGNGSLEVWEVPFPHAVKAIYSKFNGEGTDPRFMKLKPIFRCSRLRTTN 584

Query: 178 TQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSW 237
           TQSIPLT+EWS +PP+DYLLAGCHDGTVALWKF A+ S  D+RPLL FSADT+PIRAV+W
Sbjct: 585 TQSIPLTVEWSRTPPYDYLLAGCHDGTVALWKFSANSSCEDTRPLLRFSADTVPIRAVAW 644

Query: 238 APAESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD 297
           AP+ESD +SANVILTAGHGGLKFWD+RDPFRPLWD+HPAP+ IY LDWLP+P CV LSFD
Sbjct: 645 APSESDLESANVILTAGHGGLKFWDLRDPFRPLWDLHPAPRIIYSLDWLPNPRCVFLSFD 704

Query: 298 DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADG 357
           DG +R++SLLKAA DVPATG+PF   KQ+GLH   CSS+AIWS+QVSR TGMVAYC ADG
Sbjct: 705 DGTLRLLSLLKAANDVPATGRPFTAIKQKGLHTYICSSYAIWSIQVSRQTGMVAYCGADG 764

Query: 358 TVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKTVHDAGE-R 416
            V RFQLT KA +K++SR+R  H++C  +TE+ES IT  +P  N P+PLKK  + +    
Sbjct: 765 AVVRFQLTTKAADKENSRHRTPHYVCEYLTEEESIITFRSPPPNVPIPLKKLSNKSEHPL 824

Query: 417 SMRSFLIESNSSKSPNDKKGKNVLSSDNQPLALCYGNEPGEE--SEGDMTLAALKNKQKP 474
           SMR+ L +S  S   N+ K     + +N+   +C   +   E  SE  +T    KN+ +P
Sbjct: 825 SMRAILSDSVQS---NEDKTATASTLENE-ATICSDVDVRVESGSEDTLTPTKKKNRTQP 880

Query: 475 KSRSSSKKKE-------EDDQAMVCIDEEATDIQGKENEKGEA----GNGIEVLPPKVVA 523
           K +   +K E       +DD  M    +  TD   +     +A    G+  E LPPK VA
Sbjct: 881 KCKEGVEKLELECSDEPKDDAHMDADVDAQTDAVLEAQMDADALPTSGDHFENLPPKSVA 940

Query: 524 MHRVRWNMNKGSERWLCYGGAGGIIRCQEIRVPDIDKKMGKK 565
           MHRVRWNMN GSE WLCYGGA GI+RC+EI +  +D K+ KK
Sbjct: 941 MHRVRWNMNIGSEEWLCYGGAAGILRCREIVLSALDMKLMKK 982

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463006|ref|XP_004149225.1| PREDICTED: uncharacterized protein LOC101210135 [Cucumis sativus]

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 300/522 (57%), Positives = 370/522 (70%), Gaps = 19/522 (3%)

Query: 59  SERDSAVC-DVLGDFLSKPSLVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCK 117
           S  D+ +C D+  + +   S +   IP+ +ALPRVVLCLAHNGKVAWD+KWKP NA    
Sbjct: 434 SGEDNLLCKDISENVVLDASSIEFSIPESVALPRVVLCLAHNGKVAWDLKWKPMNACTDN 493

Query: 118 CKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGG 177
           CK R+GYLAVLLGNGSLEVWEVP    +KAIY     EGTDPRF+KL+P+FRCS L+   
Sbjct: 494 CKHRMGYLAVLLGNGSLEVWEVPFPHAVKAIYSKFNGEGTDPRFMKLKPIFRCSRLRTTN 553

Query: 178 TQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSW 237
           TQSIPLT+EWS +PP+DYLLAGCHDGTVALWKF A+ S  D+RPLL FSADT+PIRAV+W
Sbjct: 554 TQSIPLTVEWSRTPPYDYLLAGCHDGTVALWKFSANSSCEDTRPLLRFSADTVPIRAVAW 613

Query: 238 APAESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD 297
           AP+ESD +SANVILTAGHGGLKFWD+RDPFRPLWD+HPAP+ IY LDWLP+P CV LSFD
Sbjct: 614 APSESDLESANVILTAGHGGLKFWDLRDPFRPLWDLHPAPRIIYSLDWLPNPRCVFLSFD 673

Query: 298 DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADG 357
           DG +R++SLLKAA DVPATG+PF   KQ+GLH   CSS+AIWS+QVSR TGMVAYC ADG
Sbjct: 674 DGTLRLLSLLKAANDVPATGRPFTAIKQKGLHTYICSSYAIWSIQVSRQTGMVAYCGADG 733

Query: 358 TVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKTVHDAGE-R 416
            V RFQLT KA +K++SR+R  H++C  +TE+ES IT  +P  N P+PLKK  + +    
Sbjct: 734 AVVRFQLTTKAADKENSRHRTPHYVCEYLTEEESIITFRSPPPNVPIPLKKLSNKSEHPL 793

Query: 417 SMRSFLIESNSSKSPNDKKGKNVLSSDNQPLALCYGNEPGEE--SEGDMTLAALKNKQKP 474
           SMR+ L +S  S   N+ K     + +N+   +C   +   E  SE  +T    KN+ +P
Sbjct: 794 SMRAILSDSVQS---NEDKPATASTLENE-ATICSDVDVRVESGSEDTLTPTKKKNRTQP 849

Query: 475 KSRSSSKKKE-------EDDQAMVCIDEEATDIQGKENEKGEA----GNGIEVLPPKVVA 523
           K +   +K E       +DD  M    +  TD   +     +A    G+  E LPPK VA
Sbjct: 850 KCKEGVEKLELECSDEPKDDAHMDADVDAQTDAVLEAQMDADALPTSGDHFENLPPKSVA 909

Query: 524 MHRVRWNMNKGSERWLCYGGAGGIIRCQEIRVPDIDKKMGKK 565
           MHRVRWNMN GSE WLCYGGA GI+RC+EI +  +D K+ KK
Sbjct: 910 MHRVRWNMNIGSEEWLCYGGAAGILRCREIVLSALDMKLMKK 951

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086793|ref|XP_002307964.1| predicted protein [Populus trichocarpa] gi|222853940|gb|EEE91487.1| predicted protein [Populus trichocarpa]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 281/535 (52%), Positives = 349/535 (65%), Gaps = 56/535 (10%)

Query: 3   TEKASSSNSSLKTPVRSRKLKSKARVEKHSHDI-CQPLSNVNEDEE-------PPTANHQ 54
           T+K S  NS+L+T  +SR+LKSKAR   +   + C  L   NED+          T N+Q
Sbjct: 103 TKKLSDCNSNLRTTAQSRRLKSKARKGSNYDGVACPLLLTHNEDDNVSLDINSTSTVNYQ 162

Query: 55  IYHGSERDSAVCDVLGDFLSKPSLVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAV 114
            +  S  ++A+     D +S     +  IPKD    RVVLCLAHN KVAWD         
Sbjct: 163 THENSGLNTAMLAYGSDNVSLDINSTSSIPKDADSARVVLCLAHNEKVAWD--------- 213

Query: 115 DCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174
                 R+GYLAVLLGNGSLEVW+VPL   MK++Y SS  EGTDPRFVKL+PVFRCS LK
Sbjct: 214 -----HRMGYLAVLLGNGSLEVWDVPLPHAMKSVYSSSNGEGTDPRFVKLKPVFRCSTLK 268

Query: 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRA 234
           CGG QS+      ++                     + S  S D+RPLLCFSADT+ IRA
Sbjct: 269 CGGIQSLETPFRRNSD--------------------LESSLSHDTRPLLCFSADTVTIRA 308

Query: 235 VSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVIL 294
           ++W P+ESD  S N+ILTA H  LKFWD+RD FRPLWD+HPAPK IY LDWLPDP C+IL
Sbjct: 309 ITWVPSESDQGSPNLILTARHWCLKFWDMRDSFRPLWDLHPAPKLIYSLDWLPDPRCIIL 368

Query: 295 SFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCS 354
           S DDG MR++SL KAAYD    G+P  G KQ G+H+ NCSSFAIWS+QVSRLTGMVAYCS
Sbjct: 369 SLDDGTMRLLSLAKAAYDAAVNGQPSVGPKQLGMHVFNCSSFAIWSIQVSRLTGMVAYCS 428

Query: 355 ADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKTVHDAG 414
           ADGTV RFQLT K VEKD S++R  HF CGS++EDESAI V TPL + P+PLK+ V+D G
Sbjct: 429 ADGTVCRFQLTTKVVEKDPSKHRAPHFACGSLSEDESAIVVGTPLPDGPLPLKRLVNDVG 488

Query: 415 E--RSMRSFLIESNSSKSPNDKKGKNVLSSDNQPLALCYGNEPGEESEGDMTLAALKNKQ 472
              +S +   + + ++K P         +SD+QPLALCYG++PG     D TL A K+K+
Sbjct: 489 NNPKSKQPLSVSNKAAKIP---------TSDDQPLALCYGDDPGMYDGSDETLTASKSKK 539

Query: 473 KPKSRSSSKKKEEDDQAMVCIDEEATDIQGKENEKGEAGNGIEVLPPKVVAMHRV 527
           KPKS+S  KK+E +D A+ CI++   D + K   K  AGN IE +PPK+VAMHRV
Sbjct: 540 KPKSKSGGKKQEGEDLALTCIEQ---DDKQKGRGKDGAGNVIESIPPKIVAMHRV 591

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	568
TAIR|locus:505006132	815	AT1G19485 [Arabidopsis thalian	0.848	0.591	0.582	2.7e-156
UNIPROTKB|Q8WUA4	911	GTF3C2 "General transcription	0.316	0.197	0.271	5.9e-10
UNIPROTKB|F1MEI8	913	GTF3C2 "Uncharacterized protei	0.306	0.190	0.276	1.6e-09
MGI|MGI:1919002	907	Gtf3c2 "general transcription	0.309	0.194	0.263	9.5e-09
RGD|1560392	951	Gtf3c2 "general transcription	0.309	0.185	0.263	1.1e-08
DICTYBASE|DDB_G0279565	1094	DDB_G0279565 [Dictyostelium di	0.156	0.081	0.336	2.2e-07
MGI|MGI:1345961	461	Coro1a "coronin, actin binding	0.285	0.351	0.276	1.4e-05
RGD|620009	461	Coro1a "coronin, actin binding	0.285	0.351	0.276	2.3e-05
UNIPROTKB|H3BRJ0	249	CORO1A "Coronin" [Homo sapiens	0.244	0.558	0.275	8.1e-05
UNIPROTKB|E2QSZ5	461	CORO1A "Coronin" [Canis lupus	0.244	0.301	0.282	8.1e-05

TAIR|locus:505006132 AT1G19485 [Arabidopsis thaliana (taxid:3702)]

 Score = 1491 (529.9 bits), Expect = 2.7e-156, Sum P(2) = 2.7e-156
 Identities = 292/501 (58%), Positives = 355/501 (70%)

Query:    67 DVLGDFLSKPSLVSCPIPKDI-ALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYL 125
             + +G+  SKPS     I +DI ALPRVVLCLAHNGKV WD+KW+P  A D   K  +GYL
Sbjct:   325 EAVGNVPSKPS---SGISEDIVALPRVVLCLAHNGKVVWDMKWRPSYAGDSLNKHSMGYL 381

Query:   126 AVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTM 185
             AVLLGNGSLEVW+VP+ +   A+YLSS K  TDPRFVKL PVF+CS LKCG T+SIPLT+
Sbjct:   382 AVLLGNGSLEVWDVPMPKATSALYLSSKKAATDPRFVKLAPVFKCSNLKCGDTKSIPLTV 441

Query:   186 EWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSD 245
             EWST    D+LLAGCHDGTVALWKF  + SS D+RPLL FSADT PIRAV+WAP ESD +
Sbjct:   442 EWSTLGNPDFLLAGCHDGTVALWKFSTTKSSEDTRPLLFFSADTAPIRAVAWAPGESDQE 501

Query:   246 SANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVS 305
             SAN++ TAGH GLKFWD+RDPFRPLWD+HP P+FIY LDWL DP CV+LSFDDG +RI+S
Sbjct:   502 SANIVATAGHAGLKFWDLRDPFRPLWDLHPVPRFIYSLDWLQDPSCVLLSFDDGTLRILS 561

Query:   306 LLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365
             L+K AYDVPATG+P+  TKQQGL + NCS+F IWS+QVSRLTG+ AYC+ADG++  F+LT
Sbjct:   562 LVKVAYDVPATGRPYPNTKQQGLSVYNCSTFPIWSIQVSRLTGIAAYCTADGSIFHFELT 621

Query:   366 AKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKTVHDAGE--RSMRSFLI 423
              KAVEKD +RNR  H+LCG +T  +S   V++P+ + P+ LKK V + GE  R +RS L 
Sbjct:   622 TKAVEKD-TRNRTPHYLCGQLTMKDSTFIVHSPVPDIPIVLKKPVGETGEKQRCLRSLLN 680

Query:   424 ESNSSKSPNDKKGKNVLSSDNQPLALCYGNEPGEESEGDMTL-AALXXXXXXXXXXXXXX 482
             ES S      +   NV  SD QPLA  +  +PG ESE + T   A               
Sbjct:   681 ESPS------RYASNV--SDVQPLAFAHVEDPGLESESEGTNNKAAKSKAKKGKNNARAE 732

Query:   483 XEEDDQAMVCIDEEATDIQXXXXXXXXXXXXXXV--LPPKVVAMHRVRWNMNKGSERWLC 540
              +E+ +A+VC+ E+  + +                  PPK+VAMHRVRWNMNKGSERWLC
Sbjct:   733 EDENSRALVCVKEDGGEEEGRRKAASNNSNGMKAEGFPPKMVAMHRVRWNMNKGSERWLC 792

Query:   541 YGGAGGIIRCQEIRVPDIDKK 561
             YGGA GI+RCQEI  P  D K
Sbjct:   793 YGGAAGIVRCQEI-APTSDWK 812

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|Q8WUA4 GTF3C2 "General transcription factor 3C polypeptide 2" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
 Identities = 60/221 (27%), Positives = 98/221 (44%)

Query:    99 NGKVAWDVKWKPYNAVDC-----KCK--QRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLS 151
             NG + WD+K+ P  A +      K     RLG LA+   +G + ++ +P     +A+   
Sbjct:   467 NGCI-WDLKFCPSGAWELPGTPRKAPLLPRLGLLALACSDGKVLLFSLP---HPEALLAQ 522

Query:   152 SMKEGTDPRFVKLEPVFRCSMLKCGGTQSI-P------LTMEWSTSPPHDYLLAGCHDGT 204
                +   P   K++ V   + L+ G  Q+  P      L++ W  + PH +L AG ++G 
Sbjct:   523 QPPDAVKPAIYKVQCV---ATLQVGSMQATDPSECGQCLSLAWMPTRPHQHLAAGYYNGM 579

Query:   205 VALWKFVA---------SDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH 255
             V  W             SD S+   P  CF A    +R + W  A S     + +++AG 
Sbjct:   580 VVFWNLPTNSPLQRIRLSDGSLKLYPFQCFLAHDQAVRTLQWCKANS-----HFLVSAGS 634

Query:   256 GG-LKFWDIRDPFRPLWDIHPAPKFIYG-LDWL-PDPGCVI 293
                +KFWD+R P+ P   I+   +F+   L WL P  G  +
Sbjct:   635 DRKIKFWDLRRPYEP---INSIKRFLSTELAWLLPYNGVTV 672

GO:0000127 "transcription factor TFIIIC complex" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IDA

GO:0003677 "DNA binding" evidence=IDA

GO:0006383 "transcription from RNA polymerase III promoter" evidence=IDA;TAS

GO:0042791 "5S class rRNA transcription from RNA polymerase III type 1 promoter" evidence=IC

GO:0042797 "tRNA transcription from RNA polymerase III promoter" evidence=IC

GO:0005654 "nucleoplasm" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

UNIPROTKB|F1MEI8 GTF3C2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 153 (58.9 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
 Identities = 58/210 (27%), Positives = 91/210 (43%)

Query:   103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFV 162
             AW++   P  A       RLG LA+   +G + ++ +P     +A+      +   P   
Sbjct:   482 AWELPGTPRKA---PLLPRLGLLALACSDGKVLLFSLP---HPEALLAQQPLDAVKPAIY 535

Query:   163 KLEPVFRCSMLKCGGTQ-SIP------LTMEWSTSPPHDYLLAGCHDGTVALWKFVA--- 212
             K+  V   + L+ G  Q S P      L++ W  + PH +L AG ++G V LW       
Sbjct:   536 KVHCV---ATLQVGSMQASEPSECGQCLSLAWMPTRPHHHLAAGYYNGMVVLWNLPTNSP 592

Query:   213 ------SDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRD 265
                   SD S+   P  CF A    +R + W  A S     + + +AG    +KFWD+R 
Sbjct:   593 LQRIRLSDGSLKLYPFQCFLAHDQAVRTLQWCKANS-----HFLASAGSDRKIKFWDLRR 647

Query:   266 PFRPLWDIHPAPKFIYG-LDWL-PDPGCVI 293
             P+ P   I+   +F+   L WL P  G  +
Sbjct:   648 PYEP---INSIKRFLSTELAWLLPYNGVTV 674

GO:0006383 "transcription from RNA polymerase III promoter" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000127 "transcription factor TFIIIC complex" evidence=IEA

MGI|MGI:1919002 Gtf3c2 "general transcription factor IIIC, polypeptide 2, beta" [Mus musculus (taxid:10090)]

 Score = 151 (58.2 bits), Expect = 9.5e-09, Sum P(3) = 9.5e-09
 Identities = 57/216 (26%), Positives = 94/216 (43%)

Query:   104 WDVKWKPYNAVD-------CKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEG 156
             WD+K+ P  A +            RLG LA+   +G + ++ +P     +A+      + 
Sbjct:   467 WDLKFCPSGAWEHPETLRKAPLLPRLGLLALACSDGKVLLFSLP---HPEALLAQQPPDA 523

Query:   157 TDPRFVKLEPVFRCSMLKCGGTQ-SIP------LTMEWSTSPPHDYLLAGCHDGTVALWK 209
               P   K++ +   + L+ G  Q S P      L++ W  + PH +L AG ++G V  W 
Sbjct:   524 MKPAIYKVQCL---ATLQVGSVQASDPSECGQCLSLAWMPTRPHHHLAAGYYNGMVVFWN 580

Query:   210 FVA---------SDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LK 259
                         SD S+   P  CF A    +R + W  A S     + +++AG    +K
Sbjct:   581 LPTNSPLQRIRLSDGSLKLYPFQCFLAHDQAVRTIQWCKANS-----HFLVSAGSDRKIK 635

Query:   260 FWDIRDPFRPLWDIHPAPKFIYG-LDWL-PDPGCVI 293
             FWD+R P+ P   I+   +F+   L WL P  G  +
Sbjct:   636 FWDLRRPYEP---INCIKRFLSTELSWLLPYNGVTV 668

GO:0000127 "transcription factor TFIIIC complex" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=ISO

GO:0006383 "transcription from RNA polymerase III promoter" evidence=ISO

RGD|1560392 Gtf3c2 "general transcription factor IIIC, polypeptide 2, beta" [Rattus norvegicus (taxid:10116)]

 Score = 151 (58.2 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
 Identities = 57/216 (26%), Positives = 94/216 (43%)

Query:   104 WDVKWKPYNAVD-------CKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEG 156
             WD+K+ P  A +            RLG LA+   +G + ++ +P     +A+      + 
Sbjct:   511 WDLKFCPSGAWEHPETLRKAPLLPRLGLLALACSDGKVLLFSLP---HPEALLAQQPPDA 567

Query:   157 TDPRFVKLEPVFRCSMLKCGGTQ-SIP------LTMEWSTSPPHDYLLAGCHDGTVALWK 209
               P   K++ +   + L+ G  Q S P      L++ W  + PH +L AG ++G V  W 
Sbjct:   568 MKPAIYKVQCL---ATLQVGSVQASDPSECGQCLSLAWMPTRPHHHLAAGYYNGMVVFWN 624

Query:   210 FVA---------SDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LK 259
                         SD S+   P  CF A    +R + W  A S     + +++AG    +K
Sbjct:   625 LPTNSPLQRIRLSDGSLKLYPFQCFLAHDQAVRTIQWCKANS-----HFLVSAGSDRKIK 679

Query:   260 FWDIRDPFRPLWDIHPAPKFIYG-LDWL-PDPGCVI 293
             FWD+R P+ P   I+   +F+   L WL P  G  +
Sbjct:   680 FWDLRRPYEP---INCIKRFLSTELSWLLPYNGVTV 712

GO:0000127 "transcription factor TFIIIC complex" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=ISO

GO:0006383 "transcription from RNA polymerase III promoter" evidence=ISO

GO:0003677 "DNA binding" evidence=ISO

DICTYBASE|DDB_G0279565 DDB_G0279565 [Dictyostelium discoideum (taxid:44689)]

 Score = 149 (57.5 bits), Expect = 2.2e-07, Sum P(4) = 2.2e-07
 Identities = 32/95 (33%), Positives = 53/95 (55%)

Query:    84 PKDIALPRVVLCLAHNGKVAWDVKWKPYNAV--DCKCKQ--RLGYLAVLLGNGSLEVWEV 139
             P D + P++V  + H G   WD+KW PY     D + K   RLG L+ LLG+G++++W +
Sbjct:   635 PSDTSCPKLVYSITHEGNCCWDLKWMPYGGYYEDKETKSPIRLGVLSALLGDGTVKIWPI 694

Query:   140 PLLRTM-KAIYLSSMKEGTD-PRFVKLEPVFRCSM 172
             P    + K     + K  T   +F+K++P+F  S+
Sbjct:   695 PHPDFVEKQFNNDNSKTKTQLTKFLKIKPIFDQSL 729

GO:0044351 "macropinocytosis" evidence=RCA

MGI|MGI:1345961 Coro1a "coronin, actin binding protein 1A" [Mus musculus (taxid:10090)]

 Score = 134 (52.2 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 50/181 (27%), Positives = 79/181 (43%)

Query:   173 LKCGGTQSIPLTMEWSTSPPHDYLLA-GCHDGTVALWKFVASDSSIDSR-PLLCFSADTL 230
             L CG T  + L + W   P +D ++A G  D TV +W+       +  R P++     T 
Sbjct:    76 LVCGHTAPV-LDIAWC--PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132

Query:   231 PIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLW---DIHPAPKFIYGLDWL 286
              +  V+W P      + NV+L+AG    +  WD+      L    D+HP    IY +DW 
Sbjct:   133 RVGIVAWHPT-----AQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT--IYSVDWS 185

Query:   287 PDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL 346
              D   +  S  D  +R++   K    V    +P  GT+   +H V  S   I +   SR+
Sbjct:   186 RDGALICTSCRDKRVRVIEPRKGTV-VAEKDRPHEGTRP--VHAVFVSEGKILTTGFSRM 242

Query:   347 T 347
             +
Sbjct:   243 S 243

GO:0001772 "immunological synapse" evidence=IDA

GO:0001845 "phagolysosome assembly" evidence=ISO;IBA

GO:0001891 "phagocytic cup" evidence=ISO;IBA

GO:0003779 "actin binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005884 "actin filament" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0006816 "calcium ion transport" evidence=IMP

GO:0006909 "phagocytosis" evidence=ISO

GO:0007015 "actin filament organization" evidence=IMP

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0008064 "regulation of actin polymerization or depolymerization" evidence=IMP

GO:0008092 "cytoskeletal protein binding" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016477 "cell migration" evidence=IMP

GO:0030027 "lamellipodium" evidence=ISO;IBA

GO:0030036 "actin cytoskeleton organization" evidence=ISO

GO:0030335 "positive regulation of cell migration" evidence=IMP

GO:0030595 "leukocyte chemotaxis" evidence=IMP

GO:0030833 "regulation of actin filament polymerization" evidence=IMP

GO:0030864 "cortical actin cytoskeleton" evidence=ISO;IBA

GO:0031252 "cell leading edge" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0031589 "cell-substrate adhesion" evidence=ISO

GO:0032796 "uropod organization" evidence=IMP

GO:0034097 "response to cytokine stimulus" evidence=IMP

GO:0042102 "positive regulation of T cell proliferation" evidence=IMP

GO:0042802 "identical protein binding" evidence=IGI

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043029 "T cell homeostasis" evidence=IMP

GO:0043234 "protein complex" evidence=ISO

GO:0043548 "phosphatidylinositol 3-kinase binding" evidence=ISO

GO:0045335 "phagocytic vesicle" evidence=ISO;IBA

GO:0048873 "homeostasis of number of cells within a tissue" evidence=IMP

GO:0050870 "positive regulation of T cell activation" evidence=IMP

GO:0050918 "positive chemotaxis" evidence=ISO;IBA

GO:0051015 "actin filament binding" evidence=ISO;IDA

GO:0051126 "negative regulation of actin nucleation" evidence=ISO;IBA

GO:0071353 "cellular response to interleukin-4" evidence=IDA

RGD|620009 Coro1a "coronin, actin binding protein 1A" [Rattus norvegicus (taxid:10116)]

 Score = 132 (51.5 bits), Expect = 2.3e-05, P = 2.3e-05
 Identities = 50/181 (27%), Positives = 79/181 (43%)

Query:   173 LKCGGTQSIPLTMEWSTSPPHDYLLA-GCHDGTVALWKFVASDSSIDSR-PLLCFSADTL 230
             L CG T  + L + W   P +D ++A G  D TV +W+       +  R P++     T 
Sbjct:    76 LVCGHTAPV-LDIAWC--PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVVTLEGHTK 132

Query:   231 PIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLW---DIHPAPKFIYGLDWL 286
              +  V+W P      + NV+L+AG    +  WD+      L    D+HP    IY +DW 
Sbjct:   133 RVGIVAWHPT-----AQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT--IYSVDWS 185

Query:   287 PDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL 346
              D   +  S  D  +R++   K    V    +P  GT+   +H V  S   I +   SR+
Sbjct:   186 RDGALICTSCRDKRVRVIEPRKGTV-VAEKERPHEGTRP--VHAVFVSEGKILTTGFSRM 242

Query:   347 T 347
             +
Sbjct:   243 S 243

GO:0001772 "immunological synapse" evidence=IEA;ISO

GO:0001845 "phagolysosome assembly" evidence=ISO;IBA

GO:0001891 "phagocytic cup" evidence=ISO;IBA

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO

GO:0005884 "actin filament" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006816 "calcium ion transport" evidence=IEA;ISO

GO:0006909 "phagocytosis" evidence=ISO

GO:0007015 "actin filament organization" evidence=IEA;ISO

GO:0008022 "protein C-terminus binding" evidence=IEA;ISO

GO:0008064 "regulation of actin polymerization or depolymerization" evidence=ISO

GO:0008092 "cytoskeletal protein binding" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0008360 "regulation of cell shape" evidence=ISO;IBA

GO:0016477 "cell migration" evidence=ISO

GO:0030027 "lamellipodium" evidence=ISO;IBA

GO:0030036 "actin cytoskeleton organization" evidence=ISO

GO:0030217 "T cell differentiation" evidence=NAS

GO:0030335 "positive regulation of cell migration" evidence=IEA;ISO

GO:0030595 "leukocyte chemotaxis" evidence=ISO;IBA

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA;ISO

GO:0030864 "cortical actin cytoskeleton" evidence=ISO;IBA

GO:0031252 "cell leading edge" evidence=ISO

GO:0031589 "cell-substrate adhesion" evidence=IEA;ISO

GO:0032796 "uropod organization" evidence=ISO;IBA

GO:0034097 "response to cytokine stimulus" evidence=IEA;ISO

GO:0042102 "positive regulation of T cell proliferation" evidence=IEA;ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0043029 "T cell homeostasis" evidence=IEA;ISO

GO:0043234 "protein complex" evidence=ISO

GO:0043548 "phosphatidylinositol 3-kinase binding" evidence=IEA;ISO

GO:0045335 "phagocytic vesicle" evidence=ISO;IBA

GO:0048873 "homeostasis of number of cells within a tissue" evidence=IEA;ISO

GO:0050870 "positive regulation of T cell activation" evidence=ISO

GO:0050918 "positive chemotaxis" evidence=ISO;IBA

GO:0051015 "actin filament binding" evidence=ISO;IBA

GO:0051126 "negative regulation of actin nucleation" evidence=ISO;IBA

GO:0071353 "cellular response to interleukin-4" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0015629 "actin cytoskeleton" evidence=ISO

UNIPROTKB|H3BRJ0 CORO1A "Coronin" [Homo sapiens (taxid:9606)]

 Score = 122 (48.0 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 43/156 (27%), Positives = 69/156 (44%)

Query:   175 CGGTQSIPLTMEWSTSPPHDYLLA-GCHDGTVALWKFVASDSSIDSR-PLLCFSADTLPI 232
             CG T  + L + W   P +D ++A G  D TV +W+       +  R P++     T  +
Sbjct:    78 CGHTAPV-LDIAWC--PHNDNVIASGSEDCTVMVWEIPDGGLMLPLREPVVTLEGHTKRV 134

Query:   233 RAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLW---DIHPAPKFIYGLDWLPD 288
               V+W      + + NV+L+AG    +  WD+      L    ++HP    IY +DW  D
Sbjct:   135 GIVAW-----HTTAQNVLLSAGCDNVIMVWDVGTGAAMLTLGPEVHPDT--IYSVDWSRD 187

Query:   289 PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTK 324
              G +  S  D  +RI+   K    V    +P  GT+
Sbjct:   188 GGLICTSCRDKRVRIIEPRKGTV-VAEKDRPHEGTR 222

GO:0005884 "actin filament" evidence=IEA

GO:0001772 "immunological synapse" evidence=IEA

GO:0006816 "calcium ion transport" evidence=IEA

GO:0007015 "actin filament organization" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0030595 "leukocyte chemotaxis" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:0032796 "uropod organization" evidence=IEA

GO:0034097 "response to cytokine stimulus" evidence=IEA

GO:0042102 "positive regulation of T cell proliferation" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043029 "T cell homeostasis" evidence=IEA

GO:0048873 "homeostasis of number of cells within a tissue" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

UNIPROTKB|E2QSZ5 CORO1A "Coronin" [Canis lupus familiaris (taxid:9615)]

 Score = 127 (49.8 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 44/156 (28%), Positives = 69/156 (44%)

Query:   175 CGGTQSIPLTMEWSTSPPHDYLLA-GCHDGTVALWKFVASDSSIDSR-PLLCFSADTLPI 232
             CG T  + L + W   P +D ++A G  D TV +W+      ++  R P++     T  +
Sbjct:    78 CGHTAPV-LDIAWC--PHNDNVIASGSEDCTVMVWEIPDGGLTLPLREPVVTLEGHTKRV 134

Query:   233 RAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLW---DIHPAPKFIYGLDWLPD 288
               V+W P      + NV+L+AG    +  WD+      L    D+HP    IY +DW  D
Sbjct:   135 GIVAWHPT-----AQNVLLSAGCDNVILVWDVGTGAAVLTLGSDVHPDT--IYSVDWSRD 187

Query:   289 PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTK 324
                +  S  D  +RI+   K    V    +P  GT+
Sbjct:   188 GALICTSCRDKRVRIIEPRKGTV-VAEKDRPHEGTR 222

GO:0051126 "negative regulation of actin nucleation" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0050918 "positive chemotaxis" evidence=IEA

GO:0048873 "homeostasis of number of cells within a tissue" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=IEA

GO:0043548 "phosphatidylinositol 3-kinase binding" evidence=IEA

GO:0043029 "T cell homeostasis" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042102 "positive regulation of T cell proliferation" evidence=IEA

GO:0034097 "response to cytokine stimulus" evidence=IEA

GO:0032796 "uropod organization" evidence=IEA

GO:0031589 "cell-substrate adhesion" evidence=IEA

GO:0030864 "cortical actin cytoskeleton" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0030595 "leukocyte chemotaxis" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0007015 "actin filament organization" evidence=IEA

GO:0006816 "calcium ion transport" evidence=IEA

GO:0005884 "actin filament" evidence=IEA

GO:0001891 "phagocytic cup" evidence=IEA

GO:0001845 "phagolysosome assembly" evidence=IEA

GO:0001772 "immunological synapse" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_VIII2628 hypothetical protein (437 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	568
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.002
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 35/172 (20%), Positives = 59/172 (34%), Gaps = 30/172 (17%)

Query: 190 SPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV 249
           SP    L  G  DGT+ +W             L      T P+R V+       S     
Sbjct: 18  SPDGKLLATGSGDGTIKVWDL------ETGELLRTLKGHTGPVRDVAA------SADGTY 65

Query: 250 ILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK 308
           + +      ++ WD+      +  +     ++  + + PD   +  S  D  +++     
Sbjct: 66  LASGSSDKTIRLWDLETG-ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV----- 119

Query: 309 AAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVH 360
             +DV  TGK         L  +   +  + SV  S     VA  S DGT+ 
Sbjct: 120 --WDVE-TGKC--------LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 36/176 (20%), Positives = 70/176 (39%), Gaps = 40/176 (22%)

Query: 190 SPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLC---FSADTLPIRAVSWAPAESDSDS 246
           SP   ++ +   DGT+ LW         D R   C    +  T  + +V+++P     D 
Sbjct: 144 SPDGTFVASSSQDGTIKLW---------DLRTGKCVATLTGHTGEVNSVAFSP-----DG 189

Query: 247 ANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSL 306
             ++ ++  G +K WD+    + L  +      +  + + PD   +    +DG +R+   
Sbjct: 190 EKLLSSSSDGTIKLWDLST-GKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRV--- 245

Query: 307 LKAAYDVPATGKP---FAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTV 359
               +D+  TG+     +G              ++ S+  S     +A  SADGT+
Sbjct: 246 ----WDL-RTGECVQTLSGHTN-----------SVTSLAWSPDGKRLASGSADGTI 285

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 40/175 (22%), Positives = 65/175 (37%), Gaps = 31/175 (17%)

Query: 188 STSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA 247
           S SP    L +G  DGT+ LW     D    S  L   S  +  + +V+++P        
Sbjct: 248 SFSPDGSLLASGSSDGTIRLW-----DLRSSSSLLRTLSGHSSSVLSVAFSPDG------ 296

Query: 248 NVILTAGH-GGLKFWDIRDP-FRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIV 304
            ++ +    G ++ WD+          +      +  L + PD   ++    DDG +R+ 
Sbjct: 297 KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW 356

Query: 305 SLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTV 359
            L         TGKP    +             + SV  S    +V+  S DGTV
Sbjct: 357 DL--------RTGKPLKTLEGHS---------NVLSVSFSPDGRVVSSGSTDGTV 394

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.5 bits (93), Expect = 0.002
 Identities = 51/257 (19%), Positives = 87/257 (33%), Gaps = 31/257 (12%)

Query: 190 SPPHDYLLAGC-HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSAN 248
           SP    L+A    DGT+ LW    S   +    L   S     + + S        D + 
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDL--STGKLLRSTLSGHSDSV--VSSFSP-------DGSL 255

Query: 249 VILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK 308
           +   +  G ++ WD+R     L  +      +  + + PD   +     DG +R+  L  
Sbjct: 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL-- 313

Query: 309 AAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVS-RLTGMVAYCSADGTVHRFQLTAK 367
                  TGK  +    +G          + S+  S   + +V+  S DGT+  + L   
Sbjct: 314 ------ETGKLLSSLTLKG------HEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG 361

Query: 368 AVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKTVHDAGERSMRSFLIESNS 427
              K    +  +  +  S    +  +  +   D T V L      +  R++        S
Sbjct: 362 KPLKTLEGHSNVLSVSFS---PDGRVVSSGSTDGT-VRLWDLSTGSLLRNLDGHTSRVTS 417

Query: 428 SKSPNDKKGKNVLSSDN 444
                D K     SSDN
Sbjct: 418 LDFSPDGKSLASGSSDN 434

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 40.1 bits (92), Expect = 0.003
 Identities = 39/188 (20%), Positives = 76/188 (40%), Gaps = 24/188 (12%)

Query: 186 EWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSD 245
             + SP  + LL+G  DGT+ LW     +  I S            +  ++ +    D +
Sbjct: 70  SIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKS----LEGLHDSSVSKLALS--SPDGN 123

Query: 246 SANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVIL-SFDDGAMRIV 304
           S  +  ++  G +K WD+  P + +  +    + +  L + PD   +   S  DG +++ 
Sbjct: 124 SILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLW 183

Query: 305 SLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVS-RLTGMVAYCSADGTVHRFQ 363
            L         TGKP        L  +   +  + S+  S     ++A  S+DGT+  + 
Sbjct: 184 DL--------RTGKP--------LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227

Query: 364 LTAKAVEK 371
           L+   + +
Sbjct: 228 LSTGKLLR 235

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	568
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.98
KOG0286	343	consensus G-protein beta subunit [General function	99.98
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.97
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.97
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG0266	456	consensus WD40 repeat-containing protein [General	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.96
KOG0266	456	consensus WD40 repeat-containing protein [General	99.95
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.95
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.95
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.94
PLN00181	793	protein SPA1-RELATED; Provisional	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0645	312	consensus WD40 repeat protein [General function pr	99.94
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.94
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.94
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.94
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.94
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.94
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.93
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.93
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.93
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.93
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.92
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.92
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.92
KOG0296	399	consensus Angio-associated migratory cell protein	99.92
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.92
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.92
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.92
KOG0296	399	consensus Angio-associated migratory cell protein	99.92
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.91
PTZ00421	493	coronin; Provisional	99.91
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.91
PTZ00420	568	coronin; Provisional	99.91
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.91
PLN00181	793	protein SPA1-RELATED; Provisional	99.91
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.91
KOG0641	350	consensus WD40 repeat protein [General function pr	99.91
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.91
KOG0643	327	consensus Translation initiation factor 3, subunit	99.91
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.91
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.91
KOG0643	327	consensus Translation initiation factor 3, subunit	99.91
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.9
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.9
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.9
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.9
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.9
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.9
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.9
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.9
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.9
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.89
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.89
KOG0646	476	consensus WD40 repeat protein [General function pr	99.89
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.89
KOG0289	506	consensus mRNA splicing factor [General function p	99.88
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.88
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.88
KOG0289	506	consensus mRNA splicing factor [General function p	99.88
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.88
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.88
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.88
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.88
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.88
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.88
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.88
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.88
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.88
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.87
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.87
KOG0641	350	consensus WD40 repeat protein [General function pr	99.87
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.87
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.87
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.86
KOG2055	514	consensus WD40 repeat protein [General function pr	99.86
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.86
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.86
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.86
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.84
KOG0267	825	consensus Microtubule severing protein katanin p80	99.84
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.84
KOG2096	420	consensus WD40 repeat protein [General function pr	99.84
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.83
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.83
KOG0639	705	consensus Transducin-like enhancer of split protei	99.83
KOG4328	498	consensus WD40 protein [Function unknown]	99.83
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.82
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.82
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.81
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.81
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.81
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.8
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.79
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.79
KOG1273	405	consensus WD40 repeat protein [General function pr	99.79
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.79
KOG2096	420	consensus WD40 repeat protein [General function pr	99.78
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.78
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.77
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.77
KOG2055	514	consensus WD40 repeat protein [General function pr	99.77
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.77
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.77
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.77
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.76
KOG2048	691	consensus WD40 repeat protein [General function pr	99.76
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.76
KOG1188	376	consensus WD40 repeat protein [General function pr	99.76
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.76
KOG1539	910	consensus WD repeat protein [General function pred	99.75
KOG1539	910	consensus WD repeat protein [General function pred	99.75
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.75
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.74
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.74
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.73
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.72
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.72
KOG0646	476	consensus WD40 repeat protein [General function pr	99.72
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.71
KOG0639	705	consensus Transducin-like enhancer of split protei	99.71
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.71
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.7
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.7
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.7
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.7
KOG2048	691	consensus WD40 repeat protein [General function pr	99.7
KOG1274	933	consensus WD40 repeat protein [General function pr	99.69
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.69
KOG1310	758	consensus WD40 repeat protein [General function pr	99.69
KOG4328	498	consensus WD40 protein [Function unknown]	99.69
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.68
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.66
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.66
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.66
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.66
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.65
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.65
KOG4227	609	consensus WD40 repeat protein [General function pr	99.64
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.63
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.61
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.61
COG2319	466	FOG: WD40 repeat [General function prediction only	99.6
KOG1273	405	consensus WD40 repeat protein [General function pr	99.59
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.59
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.58
KOG1188	376	consensus WD40 repeat protein [General function pr	99.56
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.56
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.56
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.56
KOG0649	325	consensus WD40 repeat protein [General function pr	99.56
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.55
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.55
COG2319	466	FOG: WD40 repeat [General function prediction only	99.55
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.54
KOG1310	758	consensus WD40 repeat protein [General function pr	99.53
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.51
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.51
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.49
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.49
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.48
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.48
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.48
KOG0649	325	consensus WD40 repeat protein [General function pr	99.47
PRK01742	429	tolB translocation protein TolB; Provisional	99.47
KOG2139	445	consensus WD40 repeat protein [General function pr	99.46
KOG4227	609	consensus WD40 repeat protein [General function pr	99.44
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.43
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.43
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.43
KOG1963	792	consensus WD40 repeat protein [General function pr	99.43
PRK01742	429	tolB translocation protein TolB; Provisional	99.42
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.41
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.4
KOG1334	559	consensus WD40 repeat protein [General function pr	99.4
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.38
PRK11028	330	6-phosphogluconolactonase; Provisional	99.38
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.36
KOG2321	703	consensus WD40 repeat protein [General function pr	99.36
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.35
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.35
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.34
PRK11028	330	6-phosphogluconolactonase; Provisional	99.34
PRK02889	427	tolB translocation protein TolB; Provisional	99.34
KOG1963	792	consensus WD40 repeat protein [General function pr	99.33
PRK03629	429	tolB translocation protein TolB; Provisional	99.33
PRK02889	427	tolB translocation protein TolB; Provisional	99.32
PRK05137	435	tolB translocation protein TolB; Provisional	99.32
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.3
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.3
PRK04922	433	tolB translocation protein TolB; Provisional	99.3
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.29
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.28
PRK05137	435	tolB translocation protein TolB; Provisional	99.27
KOG2139	445	consensus WD40 repeat protein [General function pr	99.26
KOG4547	541	consensus WD40 repeat-containing protein [General	99.26
PRK04922	433	tolB translocation protein TolB; Provisional	99.25
PRK03629	429	tolB translocation protein TolB; Provisional	99.24
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.15
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.14
PRK01029	428	tolB translocation protein TolB; Provisional	99.14
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.12
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.1
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.08
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.08
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.08
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.07
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.04
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.02
PRK00178	430	tolB translocation protein TolB; Provisional	99.02
KOG2315	566	consensus Predicted translation initiation factor	99.0
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.99
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.99
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.99
PRK04792	448	tolB translocation protein TolB; Provisional	98.98
PRK00178	430	tolB translocation protein TolB; Provisional	98.98
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.98
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.93
PRK04792	448	tolB translocation protein TolB; Provisional	98.93
KOG2321	703	consensus WD40 repeat protein [General function pr	98.92
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.91
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.91
KOG1334	559	consensus WD40 repeat protein [General function pr	98.9
KOG2695	425	consensus WD40 repeat protein [General function pr	98.82
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.81
PRK01029	428	tolB translocation protein TolB; Provisional	98.78
KOG2315	566	consensus Predicted translation initiation factor	98.76
KOG4547	541	consensus WD40 repeat-containing protein [General	98.72
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.7
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.7
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.7
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.69
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.69
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.64
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.64
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.63
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.6
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.58
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.56
KOG2695	425	consensus WD40 repeat protein [General function pr	98.55
PRK04043	419	tolB translocation protein TolB; Provisional	98.54
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.52
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.52
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.51
COG4946	668	Uncharacterized protein related to the periplasmic	98.51
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.48
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.47
KOG2314	698	consensus Translation initiation factor 3, subunit	98.47
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.44
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.44
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.43
COG4946	668	Uncharacterized protein related to the periplasmic	98.42
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.42
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.42
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.4
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.38
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.36
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.33
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.33
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.32
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.3
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.29
PRK04043	419	tolB translocation protein TolB; Provisional	98.28
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.25
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.18
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.17
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.09
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.07
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.05
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.04
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.03
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.01
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.01
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.01
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.94
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.93
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.9
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.89
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.88
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.85
KOG2314	698	consensus Translation initiation factor 3, subunit	97.81
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.73
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.71
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.7
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.66
PRK02888	635	nitrous-oxide reductase; Validated	97.66
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.57
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.56
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.56
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.54
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.53
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.48
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.48
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.39
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.35
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.35
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.27
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.25
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.23
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.23
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.2
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.2
KOG3621	726	consensus WD40 repeat-containing protein [General	97.12
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.02
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.0
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.93
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.92
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.89
KOG3621	726	consensus WD40 repeat-containing protein [General	96.88
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.7
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.7
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.68
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.67
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.53
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.51
KOG2395	644	consensus Protein involved in vacuole import and d	96.49
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.4
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.39
COG3391	381	Uncharacterized conserved protein [Function unknow	96.21
KOG2395	644	consensus Protein involved in vacuole import and d	96.02
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.01
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.86
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.8
PRK02888	635	nitrous-oxide reductase; Validated	95.78
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.7
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.66
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.59
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.58
KOG2444	238	consensus WD40 repeat protein [General function pr	95.54
KOG2444	238	consensus WD40 repeat protein [General function pr	95.38
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.22
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.1
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.09
PRK13616	591	lipoprotein LpqB; Provisional	95.09
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.08
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.05
PRK13616	591	lipoprotein LpqB; Provisional	95.03
COG3391	381	Uncharacterized conserved protein [Function unknow	94.85
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.82
PHA02713	557	hypothetical protein; Provisional	94.81
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.66
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.6
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	94.57
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	94.54
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.48
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.45
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	94.39
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.25
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.18
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.77
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.64
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.4
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.09
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.07
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.06
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	92.53
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	92.51
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	92.39
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.1
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	91.98
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	91.7
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.56
PHA02713	557	hypothetical protein; Provisional	91.03
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.29
PHA03098	534	kelch-like protein; Provisional	90.2
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	90.19
KOG2247	615	consensus WD40 repeat-containing protein [General	90.16
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	90.16
PLN00033	398	photosystem II stability/assembly factor; Provisio	89.73
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	89.61
COG5167	776	VID27 Protein involved in vacuole import and degra	89.32
KOG2377	657	consensus Uncharacterized conserved protein [Funct	89.18
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	89.07
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	88.64
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	88.47
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	88.25
COG5276	370	Uncharacterized conserved protein [Function unknow	87.87
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	87.69
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	87.49
PF14727	418	PHTB1_N: PTHB1 N-terminus	87.06
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	86.97
KOG2377	657	consensus Uncharacterized conserved protein [Funct	86.75
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	86.66
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	86.63
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	86.27
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	86.08
PRK13684	334	Ycf48-like protein; Provisional	85.92
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	85.23
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	85.17
COG5167	776	VID27 Protein involved in vacuole import and degra	85.16
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	85.07
PHA03098	534	kelch-like protein; Provisional	84.18
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	83.97
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	83.81
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	83.34
PHA02790	480	Kelch-like protein; Provisional	82.8
PRK13684	334	Ycf48-like protein; Provisional	82.76
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	82.34
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	81.73
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	80.97

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.1e-36  Score=281.99  Aligned_cols=272  Identities=15%  Similarity=0.240  Sum_probs=234.2

Q ss_pred             ceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCcee-eEEeccCC---------------
Q 008363           90 PRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTM-KAIYLSSM---------------  153 (568)
Q Consensus        90 p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~-~~l~~~~~---------------  153 (568)
                      ..+..+.+|.. .|.+|+|+|++          ..||+|+.||+|++||..+++++ +.|.+|..               
T Consensus       148 Tp~~t~KgH~~-WVlcvawsPDg----------k~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~  216 (480)
T KOG0271|consen  148 TPLFTCKGHKN-WVLCVAWSPDG----------KKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPP  216 (480)
T ss_pred             CcceeecCCcc-EEEEEEECCCc----------chhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCC
Confidence            44667899999 88899999999          89999999999999999886554 55666665               


Q ss_pred             ----ccCCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC
Q 008363          154 ----KEGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA  227 (568)
Q Consensus       154 ----~~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~  227 (568)
                          ++++.|+.+++|+...  |...+.||+.+| +||.|-  .+ .+|++|+.|++|++|+...+      .+.+.+++
T Consensus       217 ~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~V-TCvrwG--G~-gliySgS~DrtIkvw~a~dG------~~~r~lkG  286 (480)
T KOG0271|consen  217 CRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASV-TCVRWG--GE-GLIYSGSQDRTIKVWRALDG------KLCRELKG  286 (480)
T ss_pred             ccceecccCCCCEEEEEccCceEEEEeccCccce-EEEEEc--CC-ceEEecCCCceEEEEEccch------hHHHhhcc
Confidence                6778899999999877  888999999999 999998  55 49999999999999999866      88999999


Q ss_pred             CCCCeeEEEEcc-----------CCCC-------------------CCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCC
Q 008363          228 DTLPIRAVSWAP-----------AESD-------------------SDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPA  276 (568)
Q Consensus       228 h~~~V~~v~~~p-----------~~~~-------------------~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h  276 (568)
                      |...|+.|+.+.           .+..                   ..++..+++|++|. +.+|+.....+++..+.+|
T Consensus       287 HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH  366 (480)
T KOG0271|consen  287 HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH  366 (480)
T ss_pred             cchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhch
Confidence            999999998772           2200                   01345799999998 9999998887899999999


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCC
Q 008363          277 PKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD  356 (568)
Q Consensus       277 ~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D  356 (568)
                      ..-|+.+.||||+++|++++.|..|+|||-+        +|+.+        .+|.||-++|+.++|+.|.++|++||.|
T Consensus       367 q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~--------tGk~l--------asfRGHv~~VYqvawsaDsRLlVS~SkD  430 (480)
T KOG0271|consen  367 QALVNHVSFSPDGRYIASASFDKSVKLWDGR--------TGKFL--------ASFRGHVAAVYQVAWSADSRLLVSGSKD  430 (480)
T ss_pred             hhheeeEEECCCccEEEEeecccceeeeeCC--------Ccchh--------hhhhhccceeEEEEeccCccEEEEcCCC
Confidence            9999999999999999999999999999995        58665        6999999999999999999999999999


Q ss_pred             CeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccC
Q 008363          357 GTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPL  399 (568)
Q Consensus       357 g~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~  399 (568)
                      .++++|++.+.++..+...+ .....|.-+++||..++.+...
T Consensus       431 sTLKvw~V~tkKl~~DLpGh-~DEVf~vDwspDG~rV~sggkd  472 (480)
T KOG0271|consen  431 STLKVWDVRTKKLKQDLPGH-ADEVFAVDWSPDGQRVASGGKD  472 (480)
T ss_pred             ceEEEEEeeeeeecccCCCC-CceEEEEEecCCCceeecCCCc
Confidence            99999999998888774333 3456677899999988776443

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.6e-35  Score=279.20  Aligned_cols=265  Identities=16%  Similarity=0.177  Sum_probs=232.6

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC----------------ccCCCC
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM----------------KEGTDP  159 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~----------------~~~~~~  159 (568)
                      ++-+. .+..+.|++++          ..||||+.+|.++||+.++...+.+|++|..                ++++.|
T Consensus       172 ~gd~r-Pis~~~fS~ds----------~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~D  240 (459)
T KOG0272|consen  172 VGDTR-PISGCSFSRDS----------KHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASAD  240 (459)
T ss_pred             ccCCC-cceeeEeecCC----------CeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccC
Confidence            34444 55589999999          8999999999999999999999999999876                567899


Q ss_pred             ceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEE
Q 008363          160 RFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSW  237 (568)
Q Consensus       160 ~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~  237 (568)
                      +.+++|....  .+..+.||...| ..++|+  |+|++|+++|.|.+-++||+.++      ..+....||+..|.+++|
T Consensus       241 gtvklw~~~~e~~l~~l~gH~~RV-s~VafH--PsG~~L~TasfD~tWRlWD~~tk------~ElL~QEGHs~~v~~iaf  311 (459)
T KOG0272|consen  241 GTVKLWKLSQETPLQDLEGHLARV-SRVAFH--PSGKFLGTASFDSTWRLWDLETK------SELLLQEGHSKGVFSIAF  311 (459)
T ss_pred             CceeeeccCCCcchhhhhcchhhh-eeeeec--CCCceeeecccccchhhcccccc------hhhHhhcccccccceeEe
Confidence            9999998876  677788999999 999999  88999999999999999999987      666677899999999999


Q ss_pred             ccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCC
Q 008363          238 APAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPAT  316 (568)
Q Consensus       238 ~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~  316 (568)
                      +++|      .+++|||.|. -+|||+|++ +++..+.+|...|.+|+|+|+|..|++|+.|++++|||+|..       
T Consensus       312 ~~DG------SL~~tGGlD~~~RvWDlRtg-r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r-------  377 (459)
T KOG0272|consen  312 QPDG------SLAATGGLDSLGRVWDLRTG-RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR-------  377 (459)
T ss_pred             cCCC------ceeeccCccchhheeecccC-cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc-------
Confidence            9999      7999999999 999999999 999999999999999999999999999999999999999763       


Q ss_pred             CCCccCccccceEEEecCCCCEEEEEEecC-CCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEE
Q 008363          317 GKPFAGTKQQGLHLVNCSSFAIWSVQVSRL-TGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITV  395 (568)
Q Consensus       317 g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~-~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~  395 (568)
                               ..+.++.+|...|+.|.|+|. |.+|+|++.|++++||...+....+....+.. .+++..++.++..|+.
T Consensus       378 ---------~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~-kV~s~Dis~d~~~i~t  447 (459)
T KOG0272|consen  378 ---------SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG-KVISLDISPDSQAIAT  447 (459)
T ss_pred             ---------ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc-ceEEEEeccCCceEEE
Confidence                     235799999999999999994 79999999999999999988776665444433 3455568888888888


Q ss_pred             cccCCCCCc
Q 008363          396 NTPLDNTPV  404 (568)
Q Consensus       396 ~~~~~~~~~  404 (568)
                      .++...+.+
T Consensus       448 ~s~DRT~KL  456 (459)
T KOG0272|consen  448 SSFDRTIKL  456 (459)
T ss_pred             eccCceeee
Confidence            777666644

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-34  Score=271.82  Aligned_cols=267  Identities=14%  Similarity=0.198  Sum_probs=230.7

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCCc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDPR  160 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~~  160 (568)
                      ..+|.+.++ +++|+|++          ..||+|++|.++|+||+.+...+.+..+|..              ++|+.++
T Consensus       111 ~~GH~e~Vl-~~~fsp~g----------~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg  179 (480)
T KOG0271|consen  111 IAGHGEAVL-SVQFSPTG----------SRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDG  179 (480)
T ss_pred             cCCCCCcEE-EEEecCCC----------ceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCC
Confidence            458999777 99999999          8999999999999999999989999988887              7899999


Q ss_pred             eEEEeecce---ecccccCCcCccceEEEEccC---CCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeE
Q 008363          161 FVKLEPVFR---CSMLKCGGTQSIPLTMEWSTS---PPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRA  234 (568)
Q Consensus       161 ~v~~~~~~~---~~~~~~~h~~~V~~~v~~s~~---~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~  234 (568)
                      .|.+|+..+   ....+.+|...| ++++|.|.   |..++||+++.||+|+|||+..+      .++..+.+|+.+|+|
T Consensus       180 ~I~lwdpktg~~~g~~l~gH~K~I-t~Lawep~hl~p~~r~las~skDg~vrIWd~~~~------~~~~~lsgHT~~VTC  252 (480)
T KOG0271|consen  180 SIRLWDPKTGQQIGRALRGHKKWI-TALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG------TCVRTLSGHTASVTC  252 (480)
T ss_pred             eEEEecCCCCCcccccccCcccce-eEEeecccccCCCccceecccCCCCEEEEEccCc------eEEEEeccCccceEE
Confidence            999999776   345678999999 99999874   66789999999999999999976      899999999999999


Q ss_pred             EEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEc-----------CCCC------------
Q 008363          235 VSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWL-----------PDPG------------  290 (568)
Q Consensus       235 v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~s-----------p~~~------------  290 (568)
                      |.|--.+       +|+||+.|+ |++|+...+ .....+.+|...|+.|+.+           |.++            
T Consensus       253 vrwGG~g-------liySgS~DrtIkvw~a~dG-~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~A  324 (480)
T KOG0271|consen  253 VRWGGEG-------LIYSGSQDRTIKVWRALDG-KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKA  324 (480)
T ss_pred             EEEcCCc-------eEEecCCCceEEEEEccch-hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHH
Confidence            9999886       999999999 999999987 8889999999999999877           3333            


Q ss_pred             -------------EEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCC
Q 008363          291 -------------CVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADG  357 (568)
Q Consensus       291 -------------~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg  357 (568)
                                   .|++|++|.++.+|+.....               +++..+.+|...|+.+.||||+++||++|.|.
T Consensus       325 l~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k---------------kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk  389 (480)
T KOG0271|consen  325 LERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK---------------KPITRMTGHQALVNHVSFSPDGRYIASASFDK  389 (480)
T ss_pred             HHHHHHhhccCcceeEEecCCceEEEecccccc---------------cchhhhhchhhheeeEEECCCccEEEEeeccc
Confidence                         49999999999999985422               55678899999999999999999999999999


Q ss_pred             eEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccCCCCC
Q 008363          358 TVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTP  403 (568)
Q Consensus       358 ~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~  403 (568)
                      .|++|+..++++......+-.+.+. .+++.|...+.+++....+.
T Consensus       390 SVkLW~g~tGk~lasfRGHv~~VYq-vawsaDsRLlVS~SkDsTLK  434 (480)
T KOG0271|consen  390 SVKLWDGRTGKFLASFRGHVAAVYQ-VAWSADSRLLVSGSKDSTLK  434 (480)
T ss_pred             ceeeeeCCCcchhhhhhhccceeEE-EEeccCccEEEEcCCCceEE
Confidence            9999999999887664444433333 46778877777777666553

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.3e-34  Score=276.10  Aligned_cols=244  Identities=15%  Similarity=0.212  Sum_probs=218.5

Q ss_pred             CcccCCCCCCCcceEEEeeccCCceeeEEEEccC-CCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC---
Q 008363           78 LVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPY-NAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM---  153 (568)
Q Consensus        78 ~~~~~~~~~~~~p~~~~~~~h~~~~v~~v~~sp~-~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~---  153 (568)
                      .+...+......+.+..+.+|.+.+. ++.|+|. ..         ..||+|+.||+|++|++.+...+..|.+|..   
T Consensus       196 sG~~kvW~~~~~~~~~~l~gH~~~v~-~~~fhP~~~~---------~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs  265 (459)
T KOG0272|consen  196 SGLVKVWSVPQCNLLQTLRGHTSRVG-AAVFHPVDSD---------LNLATASADGTVKLWKLSQETPLQDLEGHLARVS  265 (459)
T ss_pred             CCceeEeecCCcceeEEEecccccee-eEEEccCCCc---------cceeeeccCCceeeeccCCCcchhhhhcchhhhe
Confidence            34455555566688889999999777 9999998 33         6899999999999999999888888877655   


Q ss_pred             -----------ccCCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCc
Q 008363          154 -----------KEGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSR  220 (568)
Q Consensus       154 -----------~~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~  220 (568)
                                 .+++.|...++|++.+  ......||...| ++++|+  ++|.++++|+.|..-+|||++++      .
T Consensus       266 ~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v-~~iaf~--~DGSL~~tGGlD~~~RvWDlRtg------r  336 (459)
T KOG0272|consen  266 RVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGV-FSIAFQ--PDGSLAATGGLDSLGRVWDLRTG------R  336 (459)
T ss_pred             eeeecCCCceeeecccccchhhcccccchhhHhhccccccc-ceeEec--CCCceeeccCccchhheeecccC------c
Confidence                       6788999999999988  344556999999 999999  99999999999999999999988      9


Q ss_pred             eeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcC-CCCEEEEEeCC
Q 008363          221 PLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLP-DPGCVILSFDD  298 (568)
Q Consensus       221 ~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp-~~~~l~s~~~d  298 (568)
                      ++..+.+|..+|.+|+|+|+|      ..|||||.|+ ++|||+|.. .++.++.+|..-|+.|+|+| .|.+|++++.|
T Consensus       337 ~im~L~gH~k~I~~V~fsPNG------y~lATgs~Dnt~kVWDLR~r-~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD  409 (459)
T KOG0272|consen  337 CIMFLAGHIKEILSVAFSPNG------YHLATGSSDNTCKVWDLRMR-SELYTIPAHSNLVSQVKYSPQEGYFLVTASYD  409 (459)
T ss_pred             EEEEecccccceeeEeECCCc------eEEeecCCCCcEEEeeeccc-ccceecccccchhhheEecccCCeEEEEcccC
Confidence            999999999999999999999      9999999999 999999977 78999999999999999999 78999999999


Q ss_pred             CcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363          299 GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQ  363 (568)
Q Consensus       299 g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd  363 (568)
                      ++++||..+.        .        +++.++.||.+.|.++.+++++.+|+|++.|.++++|.
T Consensus       410 ~t~kiWs~~~--------~--------~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  410 NTVKIWSTRT--------W--------SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cceeeecCCC--------c--------ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999853        4        44579999999999999999999999999999999995

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.7e-33  Score=288.15  Aligned_cols=208  Identities=20%  Similarity=0.343  Sum_probs=192.3

Q ss_pred             ceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecce
Q 008363           90 PRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFR  169 (568)
Q Consensus        90 p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~  169 (568)
                      .......+|.+ .|+.+.|+|+.          ++|++|+.|++||+|.+.+..++-.+                     
T Consensus       442 ~~~~~L~GH~G-PVyg~sFsPd~----------rfLlScSED~svRLWsl~t~s~~V~y---------------------  489 (707)
T KOG0263|consen  442 GTSRTLYGHSG-PVYGCSFSPDR----------RFLLSCSEDSSVRLWSLDTWSCLVIY---------------------  489 (707)
T ss_pred             ceeEEeecCCC-ceeeeeecccc----------cceeeccCCcceeeeecccceeEEEe---------------------
Confidence            34455789999 66699999999          89999999999999999998777665                     


Q ss_pred             ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcE
Q 008363          170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV  249 (568)
Q Consensus       170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~  249 (568)
                           .||..+| +.++|+  |-|-++|||+.|++.++|.....      .+++.|.+|-+.|.|+.|+|+.      +|
T Consensus       490 -----~GH~~PV-wdV~F~--P~GyYFatas~D~tArLWs~d~~------~PlRifaghlsDV~cv~FHPNs------~Y  549 (707)
T KOG0263|consen  490 -----KGHLAPV-WDVQFA--PRGYYFATASHDQTARLWSTDHN------KPLRIFAGHLSDVDCVSFHPNS------NY  549 (707)
T ss_pred             -----cCCCcce-eeEEec--CCceEEEecCCCceeeeeecccC------CchhhhcccccccceEEECCcc------cc
Confidence                 8999999 999999  77999999999999999999865      8999999999999999999999      99


Q ss_pred             EEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363          250 ILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       250 las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                      +|+||.|. ||+||+.++ ..++.|.||.++|.+|+|||+|++|++|+.||.|.+||+.        +|+++        
T Consensus       550 ~aTGSsD~tVRlWDv~~G-~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~--------~~~~v--------  612 (707)
T KOG0263|consen  550 VATGSSDRTVRLWDVSTG-NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA--------NGSLV--------  612 (707)
T ss_pred             cccCCCCceEEEEEcCCC-cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC--------CCcch--------
Confidence            99999998 999999998 8899999999999999999999999999999999999994        46665        


Q ss_pred             EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                      ..+.+|++.|.+|.|+.+|..||+|+.|.+|++||+..
T Consensus       613 ~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  613 KQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             hhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            58899999999999999999999999999999999953

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.6e-30  Score=237.45  Aligned_cols=267  Identities=19%  Similarity=0.227  Sum_probs=222.2

Q ss_pred             EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCC
Q 008363           93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTD  158 (568)
Q Consensus        93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~  158 (568)
                      ..+.+|.+.+ .++.|+++.          +.|++++.||.+.|||.-+......+.-+..              +.|..
T Consensus        49 r~LkGH~~Ki-~~~~ws~Ds----------r~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGL  117 (343)
T KOG0286|consen   49 RTLKGHLNKI-YAMDWSTDS----------RRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGL  117 (343)
T ss_pred             EEecccccce-eeeEecCCc----------CeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCc
Confidence            3467999955 599999999          8999999999999999988666555543333              66778


Q ss_pred             CceEEEeecce--------ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCC
Q 008363          159 PRFVKLEPVFR--------CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTL  230 (568)
Q Consensus       159 ~~~v~~~~~~~--------~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~  230 (568)
                      +....++++..        ....+.+|++.+ .|+.|-  +| .+|++|+.|.+..+||+.++      +.+..|.+|.+
T Consensus       118 dN~Csiy~ls~~d~~g~~~v~r~l~gHtgyl-ScC~f~--dD-~~ilT~SGD~TCalWDie~g------~~~~~f~GH~g  187 (343)
T KOG0286|consen  118 DNKCSIYPLSTRDAEGNVRVSRELAGHTGYL-SCCRFL--DD-NHILTGSGDMTCALWDIETG------QQTQVFHGHTG  187 (343)
T ss_pred             CceeEEEecccccccccceeeeeecCcccee-EEEEEc--CC-CceEecCCCceEEEEEcccc------eEEEEecCCcc
Confidence            88888877763        234578999999 999987  44 69999999999999999987      89999999999


Q ss_pred             CeeEEEEcc-CCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363          231 PIRAVSWAP-AESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK  308 (568)
Q Consensus       231 ~V~~v~~~p-~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~  308 (568)
                      .|.+++++| ++      +.|+||+.|+ .+|||+|.+ .++..|.+|...|++|+|.|+|.-+++|++|++.++||+|.
T Consensus       188 DV~slsl~p~~~------ntFvSg~cD~~aklWD~R~~-~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa  260 (343)
T KOG0286|consen  188 DVMSLSLSPSDG------NTFVSGGCDKSAKLWDVRSG-QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA  260 (343)
T ss_pred             cEEEEecCCCCC------CeEEecccccceeeeeccCc-ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence            999999999 55      9999999999 999999998 99999999999999999999999999999999999999975


Q ss_pred             cccCCCCCCCCccCccccceEEEe--cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecc
Q 008363          309 AAYDVPATGKPFAGTKQQGLHLVN--CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSV  386 (568)
Q Consensus       309 ~~~~~~~~g~~~~~~~~~~l~~~~--~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~  386 (568)
                              .+.        +..|.  .-..+|++++||..|++|++|..|.++.+||.-.++..-....+ .-.+.|..+
T Consensus       261 --------D~~--------~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH-eNRvScl~~  323 (343)
T KOG0286|consen  261 --------DQE--------LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH-ENRVSCLGV  323 (343)
T ss_pred             --------CcE--------EeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc-CCeeEEEEE
Confidence                    222        23443  23468999999999999999999999999998655433322222 234678889


Q ss_pred             cCCCCceEEcccCCCCCc
Q 008363          387 TEDESAITVNTPLDNTPV  404 (568)
Q Consensus       387 ~~~~~~i~~~~~~~~~~~  404 (568)
                      ++||..+..+++...+.+
T Consensus       324 s~DG~av~TgSWDs~lri  341 (343)
T KOG0286|consen  324 SPDGMAVATGSWDSTLRI  341 (343)
T ss_pred             CCCCcEEEecchhHheee
Confidence            999999999998876643

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.98  E-value=1.2e-31  Score=274.58  Aligned_cols=274  Identities=16%  Similarity=0.223  Sum_probs=221.2

Q ss_pred             CcceEEEee-ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCc----cCCCCceE
Q 008363           88 ALPRVVLCL-AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMK----EGTDPRFV  162 (568)
Q Consensus        88 ~~p~~~~~~-~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~----~~~~~~~v  162 (568)
                      .+|.+.... -++...+.|+.|++++          .+||.|..|..|++|.+... .++.+......    ..+.+..+
T Consensus       365 ~lpSic~YT~~nt~~~v~ca~fSdds----------smlA~Gf~dS~i~~~Sl~p~-kl~~lk~~~~l~~~d~~sad~~~  433 (707)
T KOG0263|consen  365 SLPSICMYTFHNTYQGVTCAEFSDDS----------SMLACGFVDSSVRVWSLTPK-KLKKLKDASDLSNIDTESADVDV  433 (707)
T ss_pred             CCCcEEEEEEEEcCCcceeEeecCCc----------chhhccccccEEEEEecchh-hhccccchhhhccccccccchhh
Confidence            455555433 3334445599999999          79999999999999999853 22222222110    01111112


Q ss_pred             EEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC
Q 008363          163 KLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA  240 (568)
Q Consensus       163 ~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~  240 (568)
                      ...+...  ....+.||.++| +.+.|+  |+.++|++++.|++||+|.+.+.      .++..+++|..+|+++.|+|.
T Consensus       434 ~~~D~~~~~~~~~L~GH~GPV-yg~sFs--Pd~rfLlScSED~svRLWsl~t~------s~~V~y~GH~~PVwdV~F~P~  504 (707)
T KOG0263|consen  434 DMLDDDSSGTSRTLYGHSGPV-YGCSFS--PDRRFLLSCSEDSSVRLWSLDTW------SCLVIYKGHLAPVWDVQFAPR  504 (707)
T ss_pred             hhccccCCceeEEeecCCCce-eeeeec--ccccceeeccCCcceeeeecccc------eeEEEecCCCcceeeEEecCC
Confidence            2222111  233468999999 999999  88899999999999999999977      888899999999999999999


Q ss_pred             CCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCC
Q 008363          241 ESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKP  319 (568)
Q Consensus       241 ~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~  319 (568)
                      |      .+|||+|.|+ .++|..... .+++.+.+|-+.|.|+.|+|+..|+++||.|.+||+||+.        +|..
T Consensus       505 G------yYFatas~D~tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~--------~G~~  569 (707)
T KOG0263|consen  505 G------YYFATASHDQTARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVS--------TGNS  569 (707)
T ss_pred             c------eEEEecCCCceeeeeecccC-CchhhhcccccccceEEECCcccccccCCCCceEEEEEcC--------CCcE
Confidence            9      9999999999 999999876 8999999999999999999999999999999999999994        4744


Q ss_pred             ccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccC
Q 008363          320 FAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPL  399 (568)
Q Consensus       320 ~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~  399 (568)
                              ++.|.||.++|.+|+|||+|++|++|+.||.|++||+.++........+ .......+++.+|..++++...
T Consensus       570 --------VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H-t~ti~SlsFS~dg~vLasgg~D  640 (707)
T KOG0263|consen  570 --------VRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH-TGTIYSLSFSRDGNVLASGGAD  640 (707)
T ss_pred             --------EEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc-cCceeEEEEecCCCEEEecCCC
Confidence                    5799999999999999999999999999999999999998777665555 4445555899999999998887


Q ss_pred             CCCCcc
Q 008363          400 DNTPVP  405 (568)
Q Consensus       400 ~~~~~~  405 (568)
                      ..+.+.
T Consensus       641 nsV~lW  646 (707)
T KOG0263|consen  641 NSVRLW  646 (707)
T ss_pred             CeEEEE
Confidence            777655

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.98  E-value=1.7e-30  Score=237.27  Aligned_cols=231  Identities=16%  Similarity=0.200  Sum_probs=196.8

Q ss_pred             cceeecccCcccCCCCCcccCCCCCCCcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC
Q 008363           62 DSAVCDVLGDFLSKPSLVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL  141 (568)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~  141 (568)
                      +...|.+++|+.+..+.....  .+...+....+.+|++ .+.++.|.+++           .|++++.|.+.-+||+++
T Consensus       110 ~~VAcGGLdN~Csiy~ls~~d--~~g~~~v~r~l~gHtg-ylScC~f~dD~-----------~ilT~SGD~TCalWDie~  175 (343)
T KOG0286|consen  110 NFVACGGLDNKCSIYPLSTRD--AEGNVRVSRELAGHTG-YLSCCRFLDDN-----------HILTGSGDMTCALWDIET  175 (343)
T ss_pred             CeEEecCcCceeEEEeccccc--ccccceeeeeecCccc-eeEEEEEcCCC-----------ceEecCCCceEEEEEccc
Confidence            334477888876555443221  2334455556789999 77799999975           899999999999999999


Q ss_pred             CceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCce
Q 008363          142 LRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRP  221 (568)
Q Consensus       142 ~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~  221 (568)
                      ++.+..+                          .||.+.| .+|+.+|. +++.+++|+.|++.+|||++.+      .+
T Consensus       176 g~~~~~f--------------------------~GH~gDV-~slsl~p~-~~ntFvSg~cD~~aklWD~R~~------~c  221 (343)
T KOG0286|consen  176 GQQTQVF--------------------------HGHTGDV-MSLSLSPS-DGNTFVSGGCDKSAKLWDVRSG------QC  221 (343)
T ss_pred             ceEEEEe--------------------------cCCcccE-EEEecCCC-CCCeEEecccccceeeeeccCc------ce
Confidence            9999887                          8999999 99999854 8899999999999999999977      89


Q ss_pred             eEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeC--CCCCCeEEEEEcCCCCEEEEEeCC
Q 008363          222 LLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIH--PAPKFIYGLDWLPDPGCVILSFDD  298 (568)
Q Consensus       222 ~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~--~h~~~i~~l~~sp~~~~l~s~~~d  298 (568)
                      ++.|.+|.+.|++|.|.|+|      .-|++|++|+ .++||+|.. +.+..+.  .-..+|++++||-.|++|++|..|
T Consensus       222 ~qtF~ghesDINsv~ffP~G------~afatGSDD~tcRlyDlRaD-~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d  294 (343)
T KOG0286|consen  222 VQTFEGHESDINSVRFFPSG------DAFATGSDDATCRLYDLRAD-QELAVYSHDSIICGITSVAFSKSGRLLFAGYDD  294 (343)
T ss_pred             eEeecccccccceEEEccCC------CeeeecCCCceeEEEeecCC-cEEeeeccCcccCCceeEEEcccccEEEeeecC
Confidence            99999999999999999999      8999999999 999999987 5555554  234578999999999999999999


Q ss_pred             CcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363          299 GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQ  363 (568)
Q Consensus       299 g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd  363 (568)
                      .++.+||.-+        ++.        +..+.+|...|.++..+|+|..|+|||.|.+++||.
T Consensus       295 ~~c~vWDtlk--------~e~--------vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  295 FTCNVWDTLK--------GER--------VGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CceeEeeccc--------cce--------EEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            9999999833        433        468899999999999999999999999999999994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.97  E-value=2.9e-29  Score=227.93  Aligned_cols=239  Identities=15%  Similarity=0.231  Sum_probs=195.6

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCC
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGT  157 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~  157 (568)
                      +..+.+|.. .|.++..++++          ++.++++.|+++++||+.+++..+.|.+|..              ++++
T Consensus        56 ~r~~~GHsH-~v~dv~~s~dg----------~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGS  124 (315)
T KOG0279|consen   56 VRRLTGHSH-FVSDVVLSSDG----------NFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGS  124 (315)
T ss_pred             eeeeeccce-EecceEEccCC----------ceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCC
Confidence            445678999 66699999999          8999999999999999999999999999876              7899


Q ss_pred             CCceEEEeecce-ecccccCC--cCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeE
Q 008363          158 DPRFVKLEPVFR-CSMLKCGG--TQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRA  234 (568)
Q Consensus       158 ~~~~v~~~~~~~-~~~~~~~h--~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~  234 (568)
                      .|+++++|+... |......+  ...| .||.|+|.++.-+|++++.|++|++||+++.      +....+.+|++.++.
T Consensus       125 rDkTiklwnt~g~ck~t~~~~~~~~WV-scvrfsP~~~~p~Ivs~s~DktvKvWnl~~~------~l~~~~~gh~~~v~t  197 (315)
T KOG0279|consen  125 RDKTIKLWNTLGVCKYTIHEDSHREWV-SCVRFSPNESNPIIVSASWDKTVKVWNLRNC------QLRTTFIGHSGYVNT  197 (315)
T ss_pred             CcceeeeeeecccEEEEEecCCCcCcE-EEEEEcCCCCCcEEEEccCCceEEEEccCCc------chhhccccccccEEE
Confidence            999999999987 55444433  7888 9999998776789999999999999999976      778899999999999


Q ss_pred             EEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCC
Q 008363          235 VSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDV  313 (568)
Q Consensus       235 v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~  313 (568)
                      ++++|+|      .+.++|+.|+ +.+||++.+ +.+..+ +|...|.+++|+|+...|+.+ .+..|+|||+..     
T Consensus       198 ~~vSpDG------slcasGgkdg~~~LwdL~~~-k~lysl-~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~-----  263 (315)
T KOG0279|consen  198 VTVSPDG------SLCASGGKDGEAMLWDLNEG-KNLYSL-EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLES-----  263 (315)
T ss_pred             EEECCCC------CEEecCCCCceEEEEEccCC-ceeEec-cCCCeEeeEEecCCceeEeec-cCCceEEEeccc-----
Confidence            9999999      8999999999 999999987 667776 678899999999986655554 455699999943     


Q ss_pred             CCCCCCccCccccceEE-EecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          314 PATGKPFAGTKQQGLHL-VNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       314 ~~~g~~~~~~~~~~l~~-~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                         +..+...++..... .....-...+++|+++|..|+.|-.|+.|++|.+.
T Consensus       264 ---~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  264 ---KAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             ---hhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence               43332111111111 11112334678999999999999999999999984

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.97  E-value=1.7e-29  Score=225.71  Aligned_cols=230  Identities=14%  Similarity=0.207  Sum_probs=188.5

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCC-------------ccCCCCceEEEeecce----ecccccCCcCccceEE
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-------------KEGTDPRFVKLEPVFR----CSMLKCGGTQSIPLTM  185 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-------------~~~~~~~~v~~~~~~~----~~~~~~~h~~~V~~~v  185 (568)
                      -+|++++.|.+||+|...+|.|.++++-...             .......-|++.++.+    ....+.+|+..| ++|
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNV-taV   89 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNV-TAV   89 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCce-EEE
Confidence            5899999999999999999999999876554             3334555677777766    344668999999 999


Q ss_pred             EEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECC
Q 008363          186 EWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIR  264 (568)
Q Consensus       186 ~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~  264 (568)
                      .|.  .+|+.+++|+.||+++|||++..      .+.+.+ .|.++|++|..+|+.      .-|++|..++ |++||++
T Consensus        90 gF~--~dgrWMyTgseDgt~kIWdlR~~------~~qR~~-~~~spVn~vvlhpnQ------teLis~dqsg~irvWDl~  154 (311)
T KOG0315|consen   90 GFQ--CDGRWMYTGSEDGTVKIWDLRSL------SCQRNY-QHNSPVNTVVLHPNQ------TELISGDQSGNIRVWDLG  154 (311)
T ss_pred             EEe--ecCeEEEecCCCceEEEEeccCc------ccchhc-cCCCCcceEEecCCc------ceEEeecCCCcEEEEEcc
Confidence            998  89999999999999999999964      555555 567888888888887      6777887777 8888886


Q ss_pred             CC------------------------------------------------CcceeeeCCCCCCeEEEEEcCCCCEEEEEe
Q 008363          265 DP------------------------------------------------FRPLWDIHPAPKFIYGLDWLPDPGCVILSF  296 (568)
Q Consensus       265 ~~------------------------------------------------~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~  296 (568)
                      ..                                                ..|+..+..|.+.|..+.+|||+++|++++
T Consensus       155 ~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s  234 (311)
T KOG0315|consen  155 ENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS  234 (311)
T ss_pred             CCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec
Confidence            54                                                133344567899999999999999999999


Q ss_pred             CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCC
Q 008363          297 DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRN  376 (568)
Q Consensus       297 ~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~  376 (568)
                      .|.+++||++..+-               +.-..+.+|...+|..+||.+|.||+|++.|+.+++|++..++..+.+..+
T Consensus       235 sdktv~iwn~~~~~---------------kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh  299 (311)
T KOG0315|consen  235 SDKTVKIWNTDDFF---------------KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH  299 (311)
T ss_pred             CCceEEEEecCCce---------------eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCc
Confidence            99999999996541               112478899999999999999999999999999999999999888776666


Q ss_pred             Ccceeee
Q 008363          377 RPMHFLC  383 (568)
Q Consensus       377 ~~~~~~~  383 (568)
                      ..+...|
T Consensus       300 ~K~~vc~  306 (311)
T KOG0315|consen  300 HKAAVCV  306 (311)
T ss_pred             ccccEEE
Confidence            5554443

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.97  E-value=6e-29  Score=225.95  Aligned_cols=266  Identities=17%  Similarity=0.166  Sum_probs=215.2

Q ss_pred             EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC-----CceeeEEeccCC--------------
Q 008363           93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL-----LRTMKAIYLSSM--------------  153 (568)
Q Consensus        93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~-----~~~~~~l~~~~~--------------  153 (568)
                      ..+.+|++.+. .++-.+.++         ..|++++.|.++.+|++..     |..++.+.+|..              
T Consensus         9 ~tl~gh~d~Vt-~la~~~~~~---------~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~a   78 (315)
T KOG0279|consen    9 GTLEGHTDWVT-ALAIKIKNS---------DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFA   78 (315)
T ss_pred             eeecCCCceEE-EEEeecCCC---------ceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceE
Confidence            34679999555 999999876         8999999999999999865     667888888776              


Q ss_pred             ccCCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC--C
Q 008363          154 KEGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD--T  229 (568)
Q Consensus       154 ~~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h--~  229 (568)
                      .+++.|+.+++|+...  ....+.||+..| ++++|+  ++.+.|++|+.|.+|++|++...       +..++..+  .
T Consensus        79 lS~swD~~lrlWDl~~g~~t~~f~GH~~dV-lsva~s--~dn~qivSGSrDkTiklwnt~g~-------ck~t~~~~~~~  148 (315)
T KOG0279|consen   79 LSASWDGTLRLWDLATGESTRRFVGHTKDV-LSVAFS--TDNRQIVSGSRDKTIKLWNTLGV-------CKYTIHEDSHR  148 (315)
T ss_pred             EeccccceEEEEEecCCcEEEEEEecCCce-EEEEec--CCCceeecCCCcceeeeeeeccc-------EEEEEecCCCc
Confidence            6789999999999987  566789999999 999999  88999999999999999998744       44444443  7


Q ss_pred             CCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363          230 LPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK  308 (568)
Q Consensus       230 ~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~  308 (568)
                      ..|.|+.|+|+.    ...+|++++.|+ |++||+++. +....+.+|.+.++.+++||||..+++|+.||.+.|||++.
T Consensus       149 ~WVscvrfsP~~----~~p~Ivs~s~DktvKvWnl~~~-~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~  223 (315)
T KOG0279|consen  149 EWVSCVRFSPNE----SNPIIVSASWDKTVKVWNLRNC-QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE  223 (315)
T ss_pred             CcEEEEEEcCCC----CCcEEEEccCCceEEEEccCCc-chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccC
Confidence            899999999995    347999999999 999999976 77778889999999999999999999999999999999954


Q ss_pred             cccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCC--------CCcce
Q 008363          309 AAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSR--------NRPMH  380 (568)
Q Consensus       309 ~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~--------~~~~~  380 (568)
                              ++.        +.. ..|...|.+++|+|+...|+.+. +-.|+|||+.++....+...        ...|+
T Consensus       224 --------~k~--------lys-l~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~  285 (315)
T KOG0279|consen  224 --------GKN--------LYS-LEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPI  285 (315)
T ss_pred             --------Cce--------eEe-ccCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcE
Confidence                    433        234 45889999999999866665555 55699999998765543221        12344


Q ss_pred             eeeecccCCCCceEEcccCCC
Q 008363          381 FLCGSVTEDESAITVNTPLDN  401 (568)
Q Consensus       381 ~~~~s~~~~~~~i~~~~~~~~  401 (568)
                      .+.-+++.+|..+..+-....
T Consensus       286 clslaws~dG~tLf~g~td~~  306 (315)
T KOG0279|consen  286 CLSLAWSADGQTLFAGYTDNV  306 (315)
T ss_pred             EEEEEEcCCCcEEEeeecCCc
Confidence            454567788888766543333

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.3e-28  Score=222.79  Aligned_cols=216  Identities=19%  Similarity=0.380  Sum_probs=186.6

Q ss_pred             eEEEeeccCCceeeEEEEccC-CCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecce
Q 008363           91 RVVLCLAHNGKVAWDVKWKPY-NAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFR  169 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~-~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~  169 (568)
                      .+....+|.+ .+|.++|+|- |          .+||+|+.|..|+||+...+......                     
T Consensus         6 ~~~~~~gh~~-r~W~~awhp~~g----------~ilAscg~Dk~vriw~~~~~~s~~ck---------------------   53 (312)
T KOG0645|consen    6 LEQKLSGHKD-RVWSVAWHPGKG----------VILASCGTDKAVRIWSTSSGDSWTCK---------------------   53 (312)
T ss_pred             eEEeecCCCC-cEEEEEeccCCc----------eEEEeecCCceEEEEecCCCCcEEEE---------------------
Confidence            3455678998 8899999998 6          79999999999999999853221110                     


Q ss_pred             ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcE
Q 008363          170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV  249 (568)
Q Consensus       170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~  249 (568)
                       ..+-.+|+..| .+++|+  |.|++|++|+.|.++.||.-..+    +.+++.++.||...|.+++|+++|      ++
T Consensus        54 -~vld~~hkrsV-RsvAws--p~g~~La~aSFD~t~~Iw~k~~~----efecv~~lEGHEnEVK~Vaws~sG------~~  119 (312)
T KOG0645|consen   54 -TVLDDGHKRSV-RSVAWS--PHGRYLASASFDATVVIWKKEDG----EFECVATLEGHENEVKCVAWSASG------NY  119 (312)
T ss_pred             -Eeccccchhee-eeeeec--CCCcEEEEeeccceEEEeecCCC----ceeEEeeeeccccceeEEEEcCCC------CE
Confidence             00115899999 999999  77999999999999999998766    448999999999999999999999      99


Q ss_pred             EEEEcCCC-EEEEECC--CCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcccc
Q 008363          250 ILTAGHGG-LKFWDIR--DPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQ  326 (568)
Q Consensus       250 las~s~d~-v~lwD~~--~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~  326 (568)
                      ||+|+.|+ |-||.+.  ....+...+++|...|..+.|+|....|++++.|++|++|+-.. .            ....
T Consensus       120 LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~-d------------ddW~  186 (312)
T KOG0645|consen  120 LATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED-D------------DDWE  186 (312)
T ss_pred             EEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecC-C------------CCee
Confidence            99999999 9999988  44477889999999999999999999999999999999998742 1            1226


Q ss_pred             ceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          327 GLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       327 ~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      ++.++.+|...|++++|++.|..|++++.|++|+||-+.
T Consensus       187 c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  187 CVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             EEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence            788999999999999999999999999999999999864

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2e-29  Score=226.05  Aligned_cols=202  Identities=21%  Similarity=0.351  Sum_probs=175.7

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC-ceeeEEeccCCccCCCCceEEEeecceecccccCCcCc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL-RTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQS  180 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~-~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~  180 (568)
                      .+++|+|+++..         +.++++++||+++|||+... ..+..                          +..|...
T Consensus        62 ~LfdV~Wse~~e---------~~~~~a~GDGSLrl~d~~~~s~Pi~~--------------------------~kEH~~E  106 (311)
T KOG0277|consen   62 GLFDVAWSENHE---------NQVIAASGDGSLRLFDLTMPSKPIHK--------------------------FKEHKRE  106 (311)
T ss_pred             ceeEeeecCCCc---------ceEEEEecCceEEEeccCCCCcchhH--------------------------HHhhhhh
Confidence            567999999887         89999999999999996542 22322                          2789999


Q ss_pred             cceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EE
Q 008363          181 IPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LK  259 (568)
Q Consensus       181 V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~  259 (568)
                      | ++++|++. .++.+++++.||+|+||+...+      ..+++|.+|...|+..+|+|..     +++|++++.|+ ++
T Consensus       107 V-~Svdwn~~-~r~~~ltsSWD~TiKLW~~~r~------~Sv~Tf~gh~~~Iy~a~~sp~~-----~nlfas~Sgd~~l~  173 (311)
T KOG0277|consen  107 V-YSVDWNTV-RRRIFLTSSWDGTIKLWDPNRP------NSVQTFNGHNSCIYQAAFSPHI-----PNLFASASGDGTLR  173 (311)
T ss_pred             e-EEeccccc-cceeEEeeccCCceEeecCCCC------cceEeecCCccEEEEEecCCCC-----CCeEEEccCCceEE
Confidence            9 99999976 4568888899999999999866      7888999999999999999997     69999999999 99


Q ss_pred             EEECCCCCcceeeeCCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCE
Q 008363          260 FWDIRDPFRPLWDIHPAPKFIYGLDWLPD-PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAI  338 (568)
Q Consensus       260 lwD~~~~~~~~~~~~~h~~~i~~l~~sp~-~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V  338 (568)
                      +||++.+.+.+. +..|...|.++.|+.- ...|++|+.|+.|+.||+|+..               .++..+.+|..+|
T Consensus       174 lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r---------------~pl~eL~gh~~AV  237 (311)
T KOG0277|consen  174 LWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR---------------TPLFELNGHGLAV  237 (311)
T ss_pred             EEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc---------------ccceeecCCceEE
Confidence            999998866655 7789999999999984 5567778889999999999866               5678899999999


Q ss_pred             EEEEEecCC-CEEEEEeCCCeEEEEEcCCC
Q 008363          339 WSVQVSRLT-GMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       339 ~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~~  367 (568)
                      ..+.|||.. .+|++++.|-+++|||....
T Consensus       238 Rkvk~Sph~~~lLaSasYDmT~riw~~~~~  267 (311)
T KOG0277|consen  238 RKVKFSPHHASLLASASYDMTVRIWDPERQ  267 (311)
T ss_pred             EEEecCcchhhHhhhccccceEEecccccc
Confidence            999999985 89999999999999999643

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.97  E-value=1.2e-28  Score=238.30  Aligned_cols=249  Identities=18%  Similarity=0.279  Sum_probs=214.3

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCCceEEEeec
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDPRFVKLEPV  167 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~~~v~~~~~  167 (568)
                      -|.+++|+.+|          .+||+|+.||.++||+... ..+.++..|..              ++++.++++.+|+.
T Consensus       237 dVT~L~Wn~~G----------~~LatG~~~G~~riw~~~G-~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~  305 (524)
T KOG0273|consen  237 DVTSLDWNNDG----------TLLATGSEDGEARIWNKDG-NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDA  305 (524)
T ss_pred             CcceEEecCCC----------CeEEEeecCcEEEEEecCc-hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEec
Confidence            34599999999          8999999999999999876 44445544443              67889999999999


Q ss_pred             ce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCC
Q 008363          168 FR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSD  245 (568)
Q Consensus       168 ~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~  245 (568)
                      .+  +.+.+.-|...- ..|+|-   +...+++++.||.|+|+.+...      .|+.++.+|.+.|.+|.|+|.+    
T Consensus       306 ~~g~~~q~f~~~s~~~-lDVdW~---~~~~F~ts~td~~i~V~kv~~~------~P~~t~~GH~g~V~alk~n~tg----  371 (524)
T KOG0273|consen  306 HTGTVKQQFEFHSAPA-LDVDWQ---SNDEFATSSTDGCIHVCKVGED------RPVKTFIGHHGEVNALKWNPTG----  371 (524)
T ss_pred             cCceEEEeeeeccCCc-cceEEe---cCceEeecCCCceEEEEEecCC------CcceeeecccCceEEEEECCCC----
Confidence            65  666677788775 889998   4579999999999999999876      8999999999999999999999    


Q ss_pred             CCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCC---------CEEEEEeCCCcEEEEEccccccCCCC
Q 008363          246 SANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDP---------GCVILSFDDGAMRIVSLLKAAYDVPA  315 (568)
Q Consensus       246 ~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~---------~~l~s~~~dg~I~lwd~~~~~~~~~~  315 (568)
                        .+|+|+++|+ ++||..... .+...++.|...|+.+.|+|+|         ..|++++.|++|++||+.        
T Consensus       372 --~LLaS~SdD~TlkiWs~~~~-~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~--------  440 (524)
T KOG0273|consen  372 --SLLASCSDDGTLKIWSMGQS-NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE--------  440 (524)
T ss_pred             --ceEEEecCCCeeEeeecCCC-cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc--------
Confidence              8999999999 999998877 8888999999999999999975         578899999999999994        


Q ss_pred             CCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEE
Q 008363          316 TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITV  395 (568)
Q Consensus       316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~  395 (568)
                      .|        .+++.|..|..+|++|+|+|+|+|||+|+.||.|.+|+..++++-+.+........+|  ++.+|+.|..
T Consensus       441 ~g--------v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~--Wn~~G~kl~~  510 (524)
T KOG0273|consen  441 SG--------VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELC--WNAAGDKLGA  510 (524)
T ss_pred             CC--------ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEE--EcCCCCEEEE
Confidence            46        4568999999999999999999999999999999999999999988877666656664  5666666654


Q ss_pred             c
Q 008363          396 N  396 (568)
Q Consensus       396 ~  396 (568)
                      .
T Consensus       511 ~  511 (524)
T KOG0273|consen  511 C  511 (524)
T ss_pred             E
Confidence            3

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.6e-28  Score=230.49  Aligned_cols=237  Identities=14%  Similarity=0.180  Sum_probs=212.6

Q ss_pred             EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCC
Q 008363           94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDP  159 (568)
Q Consensus        94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~  159 (568)
                      ...+|.. .|+.+.|+|+-          -++++++.|++|++||..++++...+.+|.+              ++++.|
T Consensus       103 ~l~g~r~-~vt~v~~hp~~----------~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsD  171 (406)
T KOG0295|consen  103 KLAGHRS-SVTRVIFHPSE----------ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSD  171 (406)
T ss_pred             hhhcccc-ceeeeeeccCc----------eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCc
Confidence            3457777 56699999998          6899999999999999999999999999887              566777


Q ss_pred             ceEEEeecce---ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEE
Q 008363          160 RFVKLEPVFR---CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVS  236 (568)
Q Consensus       160 ~~v~~~~~~~---~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~  236 (568)
                      -.+++|+...   |.+...+|...| .++.|-  |.|++|++++.|.+|+.|++.++      .++.+|.+|...|.-++
T Consensus       172 l~~~LWd~~~~~~c~ks~~gh~h~v-S~V~f~--P~gd~ilS~srD~tik~We~~tg------~cv~t~~~h~ewvr~v~  242 (406)
T KOG0295|consen  172 LSAKLWDFDTFFRCIKSLIGHEHGV-SSVFFL--PLGDHILSCSRDNTIKAWECDTG------YCVKTFPGHSEWVRMVR  242 (406)
T ss_pred             cchhheeHHHHHHHHHHhcCcccce-eeEEEE--ecCCeeeecccccceeEEecccc------eeEEeccCchHhEEEEE
Confidence            7788998766   677888999999 999998  77899999999999999999987      99999999999999999


Q ss_pred             EccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCC---------------CCEEEEEeCCCc
Q 008363          237 WAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPD---------------PGCVILSFDDGA  300 (568)
Q Consensus       237 ~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~---------------~~~l~s~~~dg~  300 (568)
                      .+.+|      .++|+++.|. |++|-+.+. .+...++.|..+|.+++|-|.               +.++.+++.|++
T Consensus       243 v~~DG------ti~As~s~dqtl~vW~~~t~-~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt  315 (406)
T KOG0295|consen  243 VNQDG------TIIASCSNDQTLRVWVVATK-QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT  315 (406)
T ss_pred             ecCCe------eEEEecCCCceEEEEEeccc-hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce
Confidence            99999      8999999998 999999987 788889999999999999874               258999999999


Q ss_pred             EEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccC
Q 008363          301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDH  373 (568)
Q Consensus       301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~  373 (568)
                      |++||+.        +|        .|+.++.+|...|..++|+|.|+||+++..|+++++||+.+....+..
T Consensus       316 Ik~wdv~--------tg--------~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~  372 (406)
T KOG0295|consen  316 IKIWDVS--------TG--------MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTL  372 (406)
T ss_pred             EEEEecc--------CC--------eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeecc
Confidence            9999993        56        456899999999999999999999999999999999999998877653

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.96  E-value=3.5e-29  Score=238.05  Aligned_cols=222  Identities=16%  Similarity=0.298  Sum_probs=194.4

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCCceEEEeec
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDPRFVKLEPV  167 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~~~v~~~~~  167 (568)
                      +|..|.|.|+|          +.|++|+..|.+.||+..+......++.|..              +++..++.|++|..
T Consensus        98 ~V~~v~WtPeG----------RRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqp  167 (464)
T KOG0284|consen   98 PVNVVRWTPEG----------RRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQP  167 (464)
T ss_pred             ceeeEEEcCCC----------ceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEeccc
Confidence            56699999999          8999999999999999877544444555544              78999999999987


Q ss_pred             ce-ecccccC-CcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCC
Q 008363          168 FR-CSMLKCG-GTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSD  245 (568)
Q Consensus       168 ~~-~~~~~~~-h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~  245 (568)
                      .- -.+.... |...| .+++|+  |+...|++++.||+|+|||....      +..+.+.+|.-.|.+++|+|..    
T Consensus       168 nmnnVk~~~ahh~eaI-RdlafS--pnDskF~t~SdDg~ikiWdf~~~------kee~vL~GHgwdVksvdWHP~k----  234 (464)
T KOG0284|consen  168 NMNNVKIIQAHHAEAI-RDLAFS--PNDSKFLTCSDDGTIKIWDFRMP------KEERVLRGHGWDVKSVDWHPTK----  234 (464)
T ss_pred             chhhhHHhhHhhhhhh-heeccC--CCCceeEEecCCCeEEEEeccCC------chhheeccCCCCcceeccCCcc----
Confidence            54 3333344 44889 999999  66789999999999999999866      6667789999999999999998    


Q ss_pred             CCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcc
Q 008363          246 SANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTK  324 (568)
Q Consensus       246 ~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~  324 (568)
                        .+||++|.|. |++||.+++ .++.++++|...|..+.|+|++.+|+++|.|..+++||+|.+               
T Consensus       235 --gLiasgskDnlVKlWDprSg-~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---------------  296 (464)
T KOG0284|consen  235 --GLIASGSKDNLVKLWDPRSG-SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---------------  296 (464)
T ss_pred             --ceeEEccCCceeEeecCCCc-chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---------------
Confidence              7999999999 999999998 999999999999999999999999999999999999999843               


Q ss_pred             ccceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcC
Q 008363          325 QQGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       325 ~~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~  365 (568)
                       +.+.++++|...|+++.|+|-. .+|.+|+.||.|..|.+.
T Consensus       297 -kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  297 -KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             -HHHHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence             3356889999999999999984 899999999999999996

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=2.9e-28  Score=228.01  Aligned_cols=232  Identities=16%  Similarity=0.256  Sum_probs=206.2

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCCc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDPR  160 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~~  160 (568)
                      ..+|.+ +|++|++.|.+          .+|++|+.|++|+|||+.+++...++.+|..              .++.+++
T Consensus       147 i~gHlg-WVr~vavdP~n----------~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk  215 (460)
T KOG0285|consen  147 ISGHLG-WVRSVAVDPGN----------EWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDK  215 (460)
T ss_pred             hhhccc-eEEEEeeCCCc----------eeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCC
Confidence            458998 99999999998          7999999999999999999999999987765              6788999


Q ss_pred             eEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEc
Q 008363          161 FVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWA  238 (568)
Q Consensus       161 ~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~  238 (568)
                      .++.|+...  ......||-..| +||+.+  |.-+.|++|+.|.+++|||+++.      ..+.++.+|..+|..+.+.
T Consensus       216 ~VKCwDLe~nkvIR~YhGHlS~V-~~L~lh--PTldvl~t~grDst~RvWDiRtr------~~V~~l~GH~~~V~~V~~~  286 (460)
T KOG0285|consen  216 QVKCWDLEYNKVIRHYHGHLSGV-YCLDLH--PTLDVLVTGGRDSTIRVWDIRTR------ASVHVLSGHTNPVASVMCQ  286 (460)
T ss_pred             eeEEEechhhhhHHHhcccccee-EEEecc--ccceeEEecCCcceEEEeeeccc------ceEEEecCCCCcceeEEee
Confidence            999999876  667788999999 999977  66779999999999999999988      8899999999999999999


Q ss_pred             cCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCC
Q 008363          239 PAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATG  317 (568)
Q Consensus       239 p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g  317 (568)
                      |..      ..++||+.|+ |++||++.+ +.+.++..|...|.+++.+|....+++++.|. |+-|++.        .|
T Consensus       287 ~~d------pqvit~S~D~tvrlWDl~ag-kt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p--------~g  350 (460)
T KOG0285|consen  287 PTD------PQVITGSHDSTVRLWDLRAG-KTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLP--------EG  350 (460)
T ss_pred             cCC------CceEEecCCceEEEeeeccC-ceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCC--------cc
Confidence            987      6899999999 999999988 88888889999999999999988888887764 8999994        36


Q ss_pred             CCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          318 KPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       318 ~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                      ..+        +.+.+|+..|.+++...| .++++|+..|.+.+||..++..-+
T Consensus       351 ~f~--------~nlsgh~~iintl~~nsD-~v~~~G~dng~~~fwdwksg~nyQ  395 (460)
T KOG0285|consen  351 EFL--------QNLSGHNAIINTLSVNSD-GVLVSGGDNGSIMFWDWKSGHNYQ  395 (460)
T ss_pred             chh--------hccccccceeeeeeeccC-ceEEEcCCceEEEEEecCcCcccc
Confidence            554        578999999999998765 578899999999999998775443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.7e-27  Score=235.71  Aligned_cols=264  Identities=16%  Similarity=0.244  Sum_probs=219.4

Q ss_pred             ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCCceE
Q 008363           97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDPRFV  162 (568)
Q Consensus        97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~~~v  162 (568)
                      .|.. .|.+|.|+|..|          +++++-.+|.|.||+.++...++.+.-...              +.|++|..|
T Consensus        11 ~rSd-RVKsVd~HPteP----------w~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~I   79 (794)
T KOG0276|consen   11 SRSD-RVKSVDFHPTEP----------WILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQI   79 (794)
T ss_pred             ccCC-ceeeeecCCCCc----------eEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceE
Confidence            3555 555999999996          688888899999999999888777754333              678999999


Q ss_pred             EEeeccee--cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC
Q 008363          163 KLEPVFRC--SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA  240 (568)
Q Consensus       163 ~~~~~~~~--~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~  240 (568)
                      ++....+.  ...+..|...| .+++-+  |.--+++++|.|-+|++||....     ..+.++|.+|+..|.+|+|+|.
T Consensus        80 rVfnynt~ekV~~FeAH~DyI-R~iavH--Pt~P~vLtsSDDm~iKlW~we~~-----wa~~qtfeGH~HyVMqv~fnPk  151 (794)
T KOG0276|consen   80 RVFNYNTGEKVKTFEAHSDYI-RSIAVH--PTLPYVLTSSDDMTIKLWDWENE-----WACEQTFEGHEHYVMQVAFNPK  151 (794)
T ss_pred             EEEecccceeeEEeeccccce-eeeeec--CCCCeEEecCCccEEEEeeccCc-----eeeeeEEcCcceEEEEEEecCC
Confidence            98887663  44567999999 999977  66669999999999999999865     5889999999999999999999


Q ss_pred             CCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEEccccccCCCCCC
Q 008363          241 ESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDP--GCVILSFDDGAMRIVSLLKAAYDVPATG  317 (568)
Q Consensus       241 ~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~--~~l~s~~~dg~I~lwd~~~~~~~~~~~g  317 (568)
                      .     ++.|||++-|+ |++|.+.++ .+..++.+|...|+|++|-+.|  .+|++|++|.+|+|||.++        .
T Consensus       152 D-----~ntFaS~sLDrTVKVWslgs~-~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt--------k  217 (794)
T KOG0276|consen  152 D-----PNTFASASLDRTVKVWSLGSP-HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT--------K  217 (794)
T ss_pred             C-----ccceeeeeccccEEEEEcCCC-CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch--------H
Confidence            7     59999999998 999999988 8999999999999999998754  7999999999999999954        3


Q ss_pred             CCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363          318 KPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNT  397 (568)
Q Consensus       318 ~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~  397 (568)
                              +|++++.||...|..+.|+|.-.+|++||.||+++||+..+-+++.... ....+.=|.+.-..+..+++|.
T Consensus       218 --------~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn-~gleRvW~I~~~k~~~~i~vG~  288 (794)
T KOG0276|consen  218 --------SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN-YGLERVWCIAAHKGDGKIAVGF  288 (794)
T ss_pred             --------HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh-cCCceEEEEeecCCCCeEEEec
Confidence                    6778999999999999999999999999999999999998888776522 2233344444445555566654


Q ss_pred             cCCCC
Q 008363          398 PLDNT  402 (568)
Q Consensus       398 ~~~~~  402 (568)
                      ....+
T Consensus       289 Deg~i  293 (794)
T KOG0276|consen  289 DEGSV  293 (794)
T ss_pred             cCCcE
Confidence            44443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=1.2e-28  Score=229.54  Aligned_cols=245  Identities=12%  Similarity=0.196  Sum_probs=207.0

Q ss_pred             cccCCCCCCCcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-----
Q 008363           79 VSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-----  153 (568)
Q Consensus        79 ~~~~~~~~~~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-----  153 (568)
                      +...+.....+..+..+.||+|.+. |+.|..            ++|++|+.|.+|+|||+.+++++.++..|..     
T Consensus       217 nTikiWD~n~~~c~~~L~GHtGSVL-CLqyd~------------rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhl  283 (499)
T KOG0281|consen  217 NTIKIWDKNSLECLKILTGHTGSVL-CLQYDE------------RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHL  283 (499)
T ss_pred             CceEEeccccHHHHHhhhcCCCcEE-eeeccc------------eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEE
Confidence            3444444445556667789999666 888864            5899999999999999999999998887765     


Q ss_pred             -------ccCCCCceEEEeecce-----ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCce
Q 008363          154 -------KEGTDPRFVKLEPVFR-----CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRP  221 (568)
Q Consensus       154 -------~~~~~~~~v~~~~~~~-----~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~  221 (568)
                             ++.+.|+.+.+|++..     +...+.||...| ..|+|+    ..+|++++.|.+|++|++.+.      ..
T Consensus       284 rf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaV-NvVdfd----~kyIVsASgDRTikvW~~st~------ef  352 (499)
T KOG0281|consen  284 RFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV-NVVDFD----DKYIVSASGDRTIKVWSTSTC------EF  352 (499)
T ss_pred             EEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhe-eeeccc----cceEEEecCCceEEEEeccce------ee
Confidence                   6789999999999876     566788999999 999987    469999999999999999977      89


Q ss_pred             eEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 008363          222 LLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGA  300 (568)
Q Consensus       222 ~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~  300 (568)
                      ++++.+|...|.|+.+.  +      .++++|+.|. |++||+..+ .++..+.+|..-|.++.|.  .+.|++|+.||+
T Consensus       353 vRtl~gHkRGIAClQYr--~------rlvVSGSSDntIRlwdi~~G-~cLRvLeGHEeLvRciRFd--~krIVSGaYDGk  421 (499)
T KOG0281|consen  353 VRTLNGHKRGIACLQYR--D------RLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRFD--NKRIVSGAYDGK  421 (499)
T ss_pred             ehhhhcccccceehhcc--C------eEEEecCCCceEEEEecccc-HHHHHHhchHHhhhheeec--Cceeeeccccce
Confidence            99999999999988754  4      7999999998 999999988 9999999999999999997  678999999999


Q ss_pred             EEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363          301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~  367 (568)
                      |++||+.....+...       ...-|+.++..|++.|..++|  |...|++++.|.+|.|||+..+
T Consensus       422 ikvWdl~aaldpra~-------~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~  479 (499)
T KOG0281|consen  422 IKVWDLQAALDPRAP-------ASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNG  479 (499)
T ss_pred             EEEEecccccCCccc-------ccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCC
Confidence            999999654322111       122356778889999999999  6788999999999999999654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=9.1e-27  Score=244.46  Aligned_cols=242  Identities=20%  Similarity=0.364  Sum_probs=197.2

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc--eeeEEeccCCccCCCCceEEEeecceeccc
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR--TMKAIYLSSMKEGTDPRFVKLEPVFRCSML  173 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~--~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~  173 (568)
                      ..|....+.++.|+|+|          ..|++++.|+.+++|+.....  .++.+                         
T Consensus       155 ~~~~~~sv~~~~fs~~g----------~~l~~~~~~~~i~~~~~~~~~~~~~~~l-------------------------  199 (456)
T KOG0266|consen  155 AGHECPSVTCVDFSPDG----------RALAAASSDGLIRIWKLEGIKSNLLREL-------------------------  199 (456)
T ss_pred             cccccCceEEEEEcCCC----------CeEEEccCCCcEEEeecccccchhhccc-------------------------
Confidence            34433345599999999          789999999999999997755  33333                         


Q ss_pred             ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363          174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA  253 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~  253 (568)
                       .+|...| ..++|+  |++.++++|+.|++|+|||+...     ...++++.+|...|++++|+|.+      +++++|
T Consensus       200 -~~h~~~v-~~~~fs--~d~~~l~s~s~D~tiriwd~~~~-----~~~~~~l~gH~~~v~~~~f~p~g------~~i~Sg  264 (456)
T KOG0266|consen  200 -SGHTRGV-SDVAFS--PDGSYLLSGSDDKTLRIWDLKDD-----GRNLKTLKGHSTYVTSVAFSPDG------NLLVSG  264 (456)
T ss_pred             -cccccce-eeeEEC--CCCcEEEEecCCceEEEeeccCC-----CeEEEEecCCCCceEEEEecCCC------CEEEEe
Confidence             7899999 999999  88999999999999999999322     37889999999999999999999      899999


Q ss_pred             cCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363          254 GHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN  332 (568)
Q Consensus       254 s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~  332 (568)
                      +.|+ |+|||++++ .++..+.+|.+.|++++|++++++|++++.|+.|++||+..        |..      .++..+.
T Consensus       265 s~D~tvriWd~~~~-~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~--------~~~------~~~~~~~  329 (456)
T KOG0266|consen  265 SDDGTVRIWDVRTG-ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLET--------GSK------LCLKLLS  329 (456)
T ss_pred             cCCCcEEEEeccCC-eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCC--------Cce------eeeeccc
Confidence            9999 999999986 99999999999999999999999999999999999999954        431      0234666


Q ss_pred             cCCCC--EEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcc--eeeeecccCCCCceEEcccCCCC
Q 008363          333 CSSFA--IWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPM--HFLCGSVTEDESAITVNTPLDNT  402 (568)
Q Consensus       333 ~h~~~--V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~s~~~~~~~i~~~~~~~~~  402 (568)
                      ++...  +++++|+|++.+|++++.|+.+++||+..+........+...  .+........+..+.++.....+
T Consensus       330 ~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v  403 (456)
T KOG0266|consen  330 GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSV  403 (456)
T ss_pred             CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceE
Confidence            66655  999999999999999999999999999988776655444332  12222334555556665544444

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=2.5e-27  Score=228.99  Aligned_cols=235  Identities=19%  Similarity=0.327  Sum_probs=190.1

Q ss_pred             cceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecc
Q 008363           89 LPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVF  168 (568)
Q Consensus        89 ~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~  168 (568)
                      .-.+...+.|.+.+. .++++|+.+         .++|+.+..+.|.|||..+.......      .+.      ..|  
T Consensus       114 ~v~i~~~i~h~gEVn-RaRymPQnp---------~iVAt~t~~~dv~Vfd~tk~~s~~~~------~~~------~~P--  169 (422)
T KOG0264|consen  114 KVEISQKINHDGEVN-RARYMPQNP---------NIVATKTSSGDVYVFDYTKHPSKPKA------SGE------CRP--  169 (422)
T ss_pred             ceEEEEeccCCccch-hhhhCCCCC---------cEEEecCCCCCEEEEEeccCCCcccc------ccc------CCC--
Confidence            345566789999776 999999998         89999999999999999873222111      000      111  


Q ss_pred             eecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCC-CCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363          169 RCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDS-SIDSRPLLCFSADTLPIRAVSWAPAESDSDSA  247 (568)
Q Consensus       169 ~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~-~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~  247 (568)
                        ...+.||... +++|.|++...| .|++|+.|++|++||+..... .....+...+.+|+..|..++|++..     .
T Consensus       170 --dl~L~gH~~e-g~glsWn~~~~g-~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h-----~  240 (422)
T KOG0264|consen  170 --DLRLKGHEKE-GYGLSWNRQQEG-TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLH-----E  240 (422)
T ss_pred             --ceEEEeeccc-ccccccccccce-eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccc-----h
Confidence              1123788887 499999977665 999999999999999986543 23356777899999999999999986     4


Q ss_pred             cEEEEEcCCC-EEEEECCC-CCcceeeeCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEccccccCCCCCCCCccCcc
Q 008363          248 NVILTAGHGG-LKFWDIRD-PFRPLWDIHPAPKFIYGLDWLPDPG-CVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTK  324 (568)
Q Consensus       248 ~~las~s~d~-v~lwD~~~-~~~~~~~~~~h~~~i~~l~~sp~~~-~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~  324 (568)
                      .+|+++++|+ +.|||+|+ ...+.....+|.+.|+|++|+|.+. .||+|+.|++|+|||+|++.              
T Consensus       241 ~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~--------------  306 (422)
T KOG0264|consen  241 DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN--------------  306 (422)
T ss_pred             hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc--------------
Confidence            8999999999 99999996 3366677889999999999999655 55566779999999999877              


Q ss_pred             ccceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCCCeeec
Q 008363          325 QQGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       325 ~~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                       ++++++.+|...|.+|.|+|.. ..||+++.|+.+.+||+.....++
T Consensus       307 -~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq  353 (422)
T KOG0264|consen  307 -KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ  353 (422)
T ss_pred             -cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence             6678999999999999999984 899999999999999997655554

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.96  E-value=1e-26  Score=225.08  Aligned_cols=233  Identities=18%  Similarity=0.329  Sum_probs=197.0

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-------------ccCCCCce
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-------------KEGTDPRF  161 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-------------~~~~~~~~  161 (568)
                      +-.|.+ .|++++|+..|          .+|++++.||++.|||.-++...+.+..+..             +..+.+..
T Consensus       272 l~~Hkg-PI~slKWnk~G----------~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~  340 (524)
T KOG0273|consen  272 LGQHKG-PIFSLKWNKKG----------TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGC  340 (524)
T ss_pred             hhccCC-ceEEEEEcCCC----------CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCce
Confidence            346777 55599999999          8999999999999999999888887766654             34445555


Q ss_pred             EEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEcc
Q 008363          162 VKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAP  239 (568)
Q Consensus       162 v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p  239 (568)
                      +.+..+-.  ...++.||.+.| .+|.|+  |.|.+|++++.|+|++||.....      .+...+.+|+..|+.+.|+|
T Consensus       341 i~V~kv~~~~P~~t~~GH~g~V-~alk~n--~tg~LLaS~SdD~TlkiWs~~~~------~~~~~l~~Hskei~t~~wsp  411 (524)
T KOG0273|consen  341 IHVCKVGEDRPVKTFIGHHGEV-NALKWN--PTGSLLASCSDDGTLKIWSMGQS------NSVHDLQAHSKEIYTIKWSP  411 (524)
T ss_pred             EEEEEecCCCcceeeecccCce-EEEEEC--CCCceEEEecCCCeeEeeecCCC------cchhhhhhhccceeeEeecC
Confidence            55544433  556678999999 999999  78999999999999999998866      78889999999999999999


Q ss_pred             CCCCCC---CCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCC
Q 008363          240 AESDSD---SANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPA  315 (568)
Q Consensus       240 ~~~~~~---~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~  315 (568)
                      .+....   ....+++++.|. |++||+..+ .++..|..|+.+|++|+|+|+|++|++|+.||.|.+|+++        
T Consensus       412 ~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~--------  482 (524)
T KOG0273|consen  412 TGPVTSNPNMNLMLASASFDSTVKLWDVESG-VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTK--------  482 (524)
T ss_pred             CCCccCCCcCCceEEEeecCCeEEEEEccCC-ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecccc--------
Confidence            873222   235789999998 999999988 9999999999999999999999999999999999999994        


Q ss_pred             CCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          316 TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      +|+.+        +.+. ..+.|..|+|+-.|..|..+-.||.+.+.|+.
T Consensus       483 ~~~l~--------~s~~-~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  483 TGKLV--------KSYQ-GTGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             chhee--------Eeec-CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            46554        4554 44669999999999999999999999999873

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=1.7e-26  Score=242.40  Aligned_cols=234  Identities=19%  Similarity=0.311  Sum_probs=191.8

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEEC-CCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEV-PLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~-~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      .+|.. .|.+++|+|++          .+|++++.|++|+|||+ ..+.+++++                          
T Consensus       200 ~~h~~-~v~~~~fs~d~----------~~l~s~s~D~tiriwd~~~~~~~~~~l--------------------------  242 (456)
T KOG0266|consen  200 SGHTR-GVSDVAFSPDG----------SYLLSGSDDKTLRIWDLKDDGRNLKTL--------------------------  242 (456)
T ss_pred             ccccc-ceeeeEECCCC----------cEEEEecCCceEEEeeccCCCeEEEEe--------------------------
Confidence            68888 55599999999          89999999999999999 445777777                          


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG  254 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s  254 (568)
                      .+|...| ++++|+  |+|+++++|+.|++|+|||+.++      .++..+.+|...|++++|++++      ++|++++
T Consensus       243 ~gH~~~v-~~~~f~--p~g~~i~Sgs~D~tvriWd~~~~------~~~~~l~~hs~~is~~~f~~d~------~~l~s~s  307 (456)
T KOG0266|consen  243 KGHSTYV-TSVAFS--PDGNLLVSGSDDGTVRIWDVRTG------ECVRKLKGHSDGISGLAFSPDG------NLLVSAS  307 (456)
T ss_pred             cCCCCce-EEEEec--CCCCEEEEecCCCcEEEEeccCC------eEEEeeeccCCceEEEEECCCC------CEEEEcC
Confidence            8999999 999999  88899999999999999999986      8999999999999999999999      8999999


Q ss_pred             CCC-EEEEECCCCCc-ceeeeCCCCCC--eEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363          255 HGG-LKFWDIRDPFR-PLWDIHPAPKF--IYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL  330 (568)
Q Consensus       255 ~d~-v~lwD~~~~~~-~~~~~~~h~~~--i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~  330 (568)
                      .|+ |++||+.++.. ++..+.++...  +++++|+|++.+|++++.|+.+++||++.        +..        +..
T Consensus       308 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~--------~~~--------~~~  371 (456)
T KOG0266|consen  308 YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRS--------GKS--------VGT  371 (456)
T ss_pred             CCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccC--------Ccc--------eee
Confidence            999 99999998832 45666666555  89999999999999999999999999964        322        357


Q ss_pred             EecCCCC---EEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363          331 VNCSSFA---IWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNT  397 (568)
Q Consensus       331 ~~~h~~~---V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~  397 (568)
                      +.+|...   +.+...++.+.++++|+.|+.|++|++.++........+........++.+....+++.+
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s  441 (456)
T KOG0266|consen  372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSS  441 (456)
T ss_pred             ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecC
Confidence            7777764   344455677899999999999999999987665554544323333334444444444443

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.2e-27  Score=222.96  Aligned_cols=233  Identities=16%  Similarity=0.288  Sum_probs=208.3

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC-CceeeEEeccCC--------------ccCCCC
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL-LRTMKAIYLSSM--------------KEGTDP  159 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~-~~~~~~l~~~~~--------------~~~~~~  159 (568)
                      ..+|+.+ +.+|+|+..|          .+||+++.|=.+.+||+.+ .++++.+.+|..              .+++.|
T Consensus       146 LrGHt~s-v~di~~~a~G----------k~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD  214 (406)
T KOG0295|consen  146 LRGHTDS-VFDISFDASG----------KYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRD  214 (406)
T ss_pred             hhccccc-eeEEEEecCc----------cEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccc
Confidence            4689996 5599999999          8999999999999999988 667766666655              688999


Q ss_pred             ceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEE
Q 008363          160 RFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSW  237 (568)
Q Consensus       160 ~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~  237 (568)
                      ..++.|+..+  |..++.+|...| ..++-+  .||.++|+++.|.+|++|-+.++      .+...++.|.-+|-+++|
T Consensus       215 ~tik~We~~tg~cv~t~~~h~ewv-r~v~v~--~DGti~As~s~dqtl~vW~~~t~------~~k~~lR~hEh~vEci~w  285 (406)
T KOG0295|consen  215 NTIKAWECDTGYCVKTFPGHSEWV-RMVRVN--QDGTIIASCSNDQTLRVWVVATK------QCKAELREHEHPVECIAW  285 (406)
T ss_pred             cceeEEecccceeEEeccCchHhE-EEEEec--CCeeEEEecCCCceEEEEEeccc------hhhhhhhccccceEEEEe
Confidence            9999999988  889999999999 999955  99999999999999999999977      788899999999999999


Q ss_pred             ccCCCCC---------CCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 008363          238 APAESDS---------DSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLL  307 (568)
Q Consensus       238 ~p~~~~~---------~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~  307 (568)
                      .|.....         ....++++++.|+ |++||+.++ .++.++.+|...|..++|+|.|+||+++.+|+++++||++
T Consensus       286 ap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~  364 (406)
T KOG0295|consen  286 APESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK  364 (406)
T ss_pred             cccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence            9865211         1236999999999 999999999 9999999999999999999999999999999999999995


Q ss_pred             ccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          308 KAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       308 ~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                      +        +        +|+.++..|..-|+++.|+.+-.+++||+-|.++++|.-
T Consensus       365 ~--------~--------~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  365 N--------L--------QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             c--------c--------eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            4        3        566789999999999999999999999999999999963

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=3.7e-26  Score=232.25  Aligned_cols=269  Identities=18%  Similarity=0.235  Sum_probs=218.0

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC---------------ccCCCCceEEEee
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM---------------KEGTDPRFVKLEP  166 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~---------------~~~~~~~~v~~~~  166 (568)
                      -+.+.+|++..          ++||+|-..|...||+++...+++.+.-...               ..++.-+.+-+|.
T Consensus       267 kvtaa~fH~~t----------~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVwe  336 (893)
T KOG0291|consen  267 KVTAAAFHKGT----------NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWE  336 (893)
T ss_pred             ceeeeeccCCc----------eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEE
Confidence            45589999888          8999999999999999999888887755432               2233334555555


Q ss_pred             cce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCC
Q 008363          167 VFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDS  244 (568)
Q Consensus       167 ~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~  244 (568)
                      ...  +....+||...+ .+++++  |||++||+|+.||+|+|||...+      -|+.+|..|++.|+.+.|+..+   
T Consensus       337 WqsEsYVlKQQgH~~~i-~~l~YS--pDgq~iaTG~eDgKVKvWn~~Sg------fC~vTFteHts~Vt~v~f~~~g---  404 (893)
T KOG0291|consen  337 WQSESYVLKQQGHSDRI-TSLAYS--PDGQLIATGAEDGKVKVWNTQSG------FCFVTFTEHTSGVTAVQFTARG---  404 (893)
T ss_pred             eeccceeeeccccccce-eeEEEC--CCCcEEEeccCCCcEEEEeccCc------eEEEEeccCCCceEEEEEEecC---
Confidence            444  556668999999 999999  99999999999999999999977      8999999999999999999999   


Q ss_pred             CCCcEEEEEcCCC-EEEEECCCCCcceeeeCC-CCCCeEEEEEcCCCCEEEEEeCCC-cEEEEEccccccCCCCCCCCcc
Q 008363          245 DSANVILTAGHGG-LKFWDIRDPFRPLWDIHP-APKFIYGLDWLPDPGCVILSFDDG-AMRIVSLLKAAYDVPATGKPFA  321 (568)
Q Consensus       245 ~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~-h~~~i~~l~~sp~~~~l~s~~~dg-~I~lwd~~~~~~~~~~~g~~~~  321 (568)
                         +.+++.+-|| |+.||+... +..+++.. .+-...|++..|.|..+++|+.|. .|.+|++        .+|+++ 
T Consensus       405 ---~~llssSLDGtVRAwDlkRY-rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~--------qTGqll-  471 (893)
T KOG0291|consen  405 ---NVLLSSSLDGTVRAWDLKRY-RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSV--------QTGQLL-  471 (893)
T ss_pred             ---CEEEEeecCCeEEeeeeccc-ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEe--------ecCeee-
Confidence               8999999999 999999965 77777753 233457999999999999988875 5999999        568665 


Q ss_pred             CccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC--eeeccCCCCCcceeeeecccCCCCceEEcccC
Q 008363          322 GTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK--AVEKDHSRNRPMHFLCGSVTEDESAITVNTPL  399 (568)
Q Consensus       322 ~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~  399 (568)
                             -.+.||+++|.+++|+|.+..|+++|+|.+|++||+-..  ..|.-   .-.-..+..+++|+|..+++.+-.
T Consensus       472 -------DiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl---~i~sdvl~vsfrPdG~elaVaTld  541 (893)
T KOG0291|consen  472 -------DILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL---EIRSDVLAVSFRPDGKELAVATLD  541 (893)
T ss_pred             -------ehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE---eeccceeEEEEcCCCCeEEEEEec
Confidence                   589999999999999999999999999999999999644  22221   112234566899999999999888


Q ss_pred             CCCCcccccccccccc
Q 008363          400 DNTPVPLKKTVHDAGE  415 (568)
Q Consensus       400 ~~~~~~~k~~~~~~g~  415 (568)
                      +.+.+...+....+|.
T Consensus       542 gqItf~d~~~~~q~~~  557 (893)
T KOG0291|consen  542 GQITFFDIKEAVQVGS  557 (893)
T ss_pred             ceEEEEEhhhceeecc
Confidence            8887765444444433

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.95  E-value=2.1e-28  Score=232.76  Aligned_cols=229  Identities=20%  Similarity=0.293  Sum_probs=194.2

Q ss_pred             EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC---------------ccCCC
Q 008363           94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM---------------KEGTD  158 (568)
Q Consensus        94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~---------------~~~~~  158 (568)
                      ...+|+. .|+++.|++++          .++++|..+|.|++|+..- +.++.++.+..               +++++
T Consensus       133 ilQaHDs-~Vr~m~ws~~g----------~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~Sd  200 (464)
T KOG0284|consen  133 ILQAHDS-PVRTMKWSHNG----------TWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSD  200 (464)
T ss_pred             Hhhhhcc-cceeEEEccCC----------CEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecC
Confidence            3468999 77799999999          8999999999999999765 33333333331               67899


Q ss_pred             CceEEEeeccee--cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEE
Q 008363          159 PRFVKLEPVFRC--SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVS  236 (568)
Q Consensus       159 ~~~v~~~~~~~~--~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~  236 (568)
                      |..+++|+...+  ...+.||.-.| .+++|+  |.-.+||+|+.|..|++||.+++      .++.++.+|...|..+.
T Consensus       201 Dg~ikiWdf~~~kee~vL~GHgwdV-ksvdWH--P~kgLiasgskDnlVKlWDprSg------~cl~tlh~HKntVl~~~  271 (464)
T KOG0284|consen  201 DGTIKIWDFRMPKEERVLRGHGWDV-KSVDWH--PTKGLIASGSKDNLVKLWDPRSG------SCLATLHGHKNTVLAVK  271 (464)
T ss_pred             CCeEEEEeccCCchhheeccCCCCc-ceeccC--CccceeEEccCCceeEeecCCCc------chhhhhhhccceEEEEE
Confidence            999999998774  33568999999 999999  66679999999999999999987      89999999999999999


Q ss_pred             EccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEccccccCCC
Q 008363          237 WAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDP-GCVILSFDDGAMRIVSLLKAAYDVP  314 (568)
Q Consensus       237 ~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~-~~l~s~~~dg~I~lwd~~~~~~~~~  314 (568)
                      |++++      ++|+|+|.|. ++++|+|+. +.++.+++|...|+++.|+|-. ..|.+|+.||.|..|.+..      
T Consensus       272 f~~n~------N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~------  338 (464)
T KOG0284|consen  272 FNPNG------NWLLTGSKDQSCKVFDIRTM-KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGL------  338 (464)
T ss_pred             EcCCC------CeeEEccCCceEEEEehhHh-HHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccc------
Confidence            99999      9999999999 999999965 8889999999999999999965 4556678899999999841      


Q ss_pred             CCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          315 ATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       315 ~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                        -+++       ...-.+|...||+++|+|-|.+|++|+.|.++++|.-.
T Consensus       339 --~~p~-------~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  339 --EEPL-------GEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             --cccc-------cCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence              1111       11235799999999999999999999999999999763

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=6.3e-26  Score=237.38  Aligned_cols=214  Identities=17%  Similarity=0.228  Sum_probs=169.7

Q ss_pred             eeccCCceeeEEEEcc-CCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363           95 CLAHNGKVAWDVKWKP-YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML  173 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp-~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~  173 (568)
                      +.+|.+ .|++++|+| ++          .+||+|+.||+|+|||+.++......                   ......
T Consensus        71 l~GH~~-~V~~v~fsP~d~----------~~LaSgS~DgtIkIWdi~~~~~~~~~-------------------~~~l~~  120 (493)
T PTZ00421         71 LLGQEG-PIIDVAFNPFDP----------QKLFTASEDGTIMGWGIPEEGLTQNI-------------------SDPIVH  120 (493)
T ss_pred             EeCCCC-CEEEEEEcCCCC----------CEEEEEeCCCEEEEEecCCCcccccc-------------------CcceEE
Confidence            568998 555999999 66          79999999999999999874321100                   001112


Q ss_pred             ccCCcCccceEEEEccCCCC-CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363          174 KCGGTQSIPLTMEWSTSPPH-DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILT  252 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las  252 (568)
                      +.+|...| .+++|+  |++ .+|++|+.|++|+|||+.++      ..+..+.+|...|.+++|+|++      .+|++
T Consensus       121 L~gH~~~V-~~l~f~--P~~~~iLaSgs~DgtVrIWDl~tg------~~~~~l~~h~~~V~sla~spdG------~lLat  185 (493)
T PTZ00421        121 LQGHTKKV-GIVSFH--PSAMNVLASAGADMVVNVWDVERG------KAVEVIKCHSDQITSLEWNLDG------SLLCT  185 (493)
T ss_pred             ecCCCCcE-EEEEeC--cCCCCEEEEEeCCCEEEEEECCCC------eEEEEEcCCCCceEEEEEECCC------CEEEE
Confidence            37899999 999999  543 69999999999999999876      7778888999999999999999      89999


Q ss_pred             EcCCC-EEEEECCCCCcceeeeCCCCCCe-EEEEEcCCCCEEEEEe----CCCcEEEEEccccccCCCCCCCCccCcccc
Q 008363          253 AGHGG-LKFWDIRDPFRPLWDIHPAPKFI-YGLDWLPDPGCVILSF----DDGAMRIVSLLKAAYDVPATGKPFAGTKQQ  326 (568)
Q Consensus       253 ~s~d~-v~lwD~~~~~~~~~~~~~h~~~i-~~l~~sp~~~~l~s~~----~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~  326 (568)
                      ++.|+ |+|||++++ ..+..+.+|.+.+ ..+.|.+++..|++++    .|+.|++||+++..               .
T Consensus       186 gs~Dg~IrIwD~rsg-~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~---------------~  249 (493)
T PTZ00421        186 TSKDKKLNIIDPRDG-TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA---------------S  249 (493)
T ss_pred             ecCCCEEEEEECCCC-cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC---------------C
Confidence            99999 999999987 6777788887654 5788999988888765    37999999997633               2


Q ss_pred             ceEEEecC-CCCEEEEEEecCCCEEEEEe-CCCeEEEEEcCCCee
Q 008363          327 GLHLVNCS-SFAIWSVQVSRLTGMVAYCS-ADGTVHRFQLTAKAV  369 (568)
Q Consensus       327 ~l~~~~~h-~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~~~~  369 (568)
                      ++.....+ ...+....|++++.+|++++ .|+.|++||+.++..
T Consensus       250 p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~  294 (493)
T PTZ00421        250 PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL  294 (493)
T ss_pred             ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence            22333333 34566678999999998887 599999999976653

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=9.1e-28  Score=233.17  Aligned_cols=230  Identities=16%  Similarity=0.267  Sum_probs=198.3

Q ss_pred             EEEeeccCCceeeEEEEcc-CCCCcccccCcccEEEEEeCCCcEEEEECCC-CceeeEEeccCC--------------cc
Q 008363           92 VVLCLAHNGKVAWDVKWKP-YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL-LRTMKAIYLSSM--------------KE  155 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp-~~~~~~~~~~~~~~las~s~dg~V~iwd~~~-~~~~~~l~~~~~--------------~~  155 (568)
                      +..+.+|+.++. ++.|.| .+          ++|++++.|+.|+||++.. +.|++++.+|..              .+
T Consensus       207 ~~~~~gH~kgvs-ai~~fp~~~----------hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS  275 (503)
T KOG0282|consen  207 SHNLSGHTKGVS-AIQWFPKKG----------HLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLS  275 (503)
T ss_pred             eeeccCCccccc-hhhhcccee----------eEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeee
Confidence            556789999776 999999 55          8999999999999999988 999999999876              67


Q ss_pred             CCCCceEEEeecceecccccCCcCccceEEEEccCCCC-CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeE
Q 008363          156 GTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPH-DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRA  234 (568)
Q Consensus       156 ~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~  234 (568)
                      ++-|+++++|+..+.......|.+.+++|+.|+  |++ +.+++|+.|+.|+.||++++      +.++.+..|-+.|.+
T Consensus       276 ~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~--pd~~n~fl~G~sd~ki~~wDiRs~------kvvqeYd~hLg~i~~  347 (503)
T KOG0282|consen  276 ASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFH--PDNQNIFLVGGSDKKIRQWDIRSG------KVVQEYDRHLGAILD  347 (503)
T ss_pred             eecceeeeeeccccceEEEEEecCCCceeeecC--CCCCcEEEEecCCCcEEEEeccch------HHHHHHHhhhhheee
Confidence            899999999999996666677888888999998  555 79999999999999999988      888899999999999


Q ss_pred             EEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcce-------------------------------------------
Q 008363          235 VSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPL-------------------------------------------  270 (568)
Q Consensus       235 v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~-------------------------------------------  270 (568)
                      |.|-+.+      ..|+++++|+ ++||+.+.+. ++                                           
T Consensus       348 i~F~~~g------~rFissSDdks~riWe~~~~v-~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~  420 (503)
T KOG0282|consen  348 ITFVDEG------RRFISSSDDKSVRIWENRIPV-PIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL  420 (503)
T ss_pred             eEEccCC------ceEeeeccCccEEEEEcCCCc-cchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccccc
Confidence            9999999      8999999999 9999987651 11                                           


Q ss_pred             ---eeeCCCC--CCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEec
Q 008363          271 ---WDIHPAP--KFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSR  345 (568)
Q Consensus       271 ---~~~~~h~--~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp  345 (568)
                         ..+.+|.  +.-..+.|||||++|++|..||.+.+||.++        -+.        +..+..|..++..+.|+|
T Consensus       421 nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt--------~kl--------~~~lkah~~~ci~v~wHP  484 (503)
T KOG0282|consen  421 NKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT--------TKL--------VSKLKAHDQPCIGVDWHP  484 (503)
T ss_pred             CHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh--------hhh--------hhccccCCcceEEEEecC
Confidence               0112443  3446789999999999999999999999954        222        358899999999999999


Q ss_pred             CC-CEEEEEeCCCeEEEEE
Q 008363          346 LT-GMVAYCSADGTVHRFQ  363 (568)
Q Consensus       346 ~~-~~l~s~s~Dg~v~iwd  363 (568)
                      .. ..+|||+.||.|++|+
T Consensus       485 ~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  485 VEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             CCcceeEecccCceeEecC
Confidence            85 8899999999999996

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=7.2e-26  Score=201.00  Aligned_cols=235  Identities=16%  Similarity=0.192  Sum_probs=199.8

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCC
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGT  157 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~  157 (568)
                      +....+|.+ .|.+++|+-+|          ++.++|+.|.+|++|+.-.+.+++++.+|..              .++.
T Consensus        10 ~~~l~~~qg-aV~avryN~dG----------nY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~G   78 (307)
T KOG0316|consen   10 LSILDCAQG-AVRAVRYNVDG----------NYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCG   78 (307)
T ss_pred             ceeeccccc-ceEEEEEccCC----------CEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCC
Confidence            444567787 66699999999          8999999999999999999999999988765              6788


Q ss_pred             CCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEE
Q 008363          158 DPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAV  235 (568)
Q Consensus       158 ~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v  235 (568)
                      .|+.+.+|++.+  ....+.+|.+.| .+++|+  .+...+++|+.|.+|++||.++...    +|++.+......|.+|
T Consensus        79 gDk~v~vwDV~TGkv~Rr~rgH~aqV-NtV~fN--eesSVv~SgsfD~s~r~wDCRS~s~----ePiQildea~D~V~Si  151 (307)
T KOG0316|consen   79 GDKAVQVWDVNTGKVDRRFRGHLAQV-NTVRFN--EESSVVASGSFDSSVRLWDCRSRSF----EPIQILDEAKDGVSSI  151 (307)
T ss_pred             CCceEEEEEcccCeeeeeccccccee-eEEEec--CcceEEEeccccceeEEEEcccCCC----CccchhhhhcCceeEE
Confidence            999999999988  556778999999 999999  7888999999999999999998744    8999998888999999


Q ss_pred             EEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCC
Q 008363          236 SWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVP  314 (568)
Q Consensus       236 ~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~  314 (568)
                      ..+.        ..|++|+.|| ++.||+|.+ .......  ..+|++++|++|++++++++.|++|++.|-        
T Consensus       152 ~v~~--------heIvaGS~DGtvRtydiR~G-~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk--------  212 (307)
T KOG0316|consen  152 DVAE--------HEIVAGSVDGTVRTYDIRKG-TLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDK--------  212 (307)
T ss_pred             Eecc--------cEEEeeccCCcEEEEEeecc-eeehhhc--CCcceeEEecCCCCEEEEeeccceeeeccc--------
Confidence            8765        4789999999 999999988 4444444  456999999999999999999999999998        


Q ss_pred             CCCCCccCccccceEEEecCCCCEEE--EEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          315 ATGKPFAGTKQQGLHLVNCSSFAIWS--VQVSRLTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       315 ~~g~~~~~~~~~~l~~~~~h~~~V~~--l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                      .+|+++        ..+.||...-+.  .+++.....+++|+.||.|++||+....+..
T Consensus       213 ~tGklL--------~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~s  263 (307)
T KOG0316|consen  213 ETGKLL--------KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQIS  263 (307)
T ss_pred             chhHHH--------HHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeee
Confidence            468776        588888865443  4566667899999999999999997655443

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=7.8e-26  Score=229.91  Aligned_cols=209  Identities=16%  Similarity=0.305  Sum_probs=181.6

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS  171 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~  171 (568)
                      ++...+|...+. +++++|||          .++|+|+.||.|+|||...+-|+.++                       
T Consensus       343 VlKQQgH~~~i~-~l~YSpDg----------q~iaTG~eDgKVKvWn~~SgfC~vTF-----------------------  388 (893)
T KOG0291|consen  343 VLKQQGHSDRIT-SLAYSPDG----------QLIATGAEDGKVKVWNTQSGFCFVTF-----------------------  388 (893)
T ss_pred             eeecccccccee-eEEECCCC----------cEEEeccCCCcEEEEeccCceEEEEe-----------------------
Confidence            444568988566 99999999          89999999999999999999999887                       


Q ss_pred             ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC-CCCeeEEEEccCCCCCCCCcEE
Q 008363          172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD-TLPIRAVSWAPAESDSDSANVI  250 (568)
Q Consensus       172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-~~~V~~v~~~p~~~~~~~~~~l  250 (568)
                         ..|+..| +.+.|+  ..|+.+++.|-||+|+.||+..-      +..++|..- .....||+..|.|      .++
T Consensus       389 ---teHts~V-t~v~f~--~~g~~llssSLDGtVRAwDlkRY------rNfRTft~P~p~QfscvavD~sG------elV  450 (893)
T KOG0291|consen  389 ---TEHTSGV-TAVQFT--ARGNVLLSSSLDGTVRAWDLKRY------RNFRTFTSPEPIQFSCVAVDPSG------ELV  450 (893)
T ss_pred             ---ccCCCce-EEEEEE--ecCCEEEEeecCCeEEeeeeccc------ceeeeecCCCceeeeEEEEcCCC------CEE
Confidence               8899999 999999  88999999999999999999865      777777543 2346789999998      899


Q ss_pred             EEEcCCC--EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363          251 LTAGHGG--LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       251 as~s~d~--v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                      ..|+.|.  |.+|++.++ +.+-.+.+|.++|.+++|+|++..|++++.|.+|++||+-...      |.         +
T Consensus       451 ~AG~~d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~------~~---------v  514 (893)
T KOG0291|consen  451 CAGAQDSFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS------GT---------V  514 (893)
T ss_pred             EeeccceEEEEEEEeecC-eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC------ce---------e
Confidence            9999997  999999999 8899999999999999999999999999999999999994321      21         2


Q ss_pred             EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363          329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV  369 (568)
Q Consensus       329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~  369 (568)
                      .++. +...+..++|+|+|+-|++++.||.|.+||...+..
T Consensus       515 Etl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q  554 (893)
T KOG0291|consen  515 ETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQ  554 (893)
T ss_pred             eeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhcee
Confidence            3443 667889999999999999999999999999975543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.95  E-value=4.8e-28  Score=225.58  Aligned_cols=220  Identities=14%  Similarity=0.240  Sum_probs=194.6

Q ss_pred             CceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------ccCCCCceEEEeec
Q 008363          100 GKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------KEGTDPRFVKLEPV  167 (568)
Q Consensus       100 ~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------~~~~~~~~v~~~~~  167 (568)
                      ..-|+|+.+..            ..+++|..|.+|+|||..+..+++.+++|+.            ++|+.|.++++|+.
T Consensus       197 skgVYClQYDD------------~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv  264 (499)
T KOG0281|consen  197 SKGVYCLQYDD------------EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDV  264 (499)
T ss_pred             CCceEEEEecc------------hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEec
Confidence            33566888754            3699999999999999999999999999987            78999999999999


Q ss_pred             ce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCC
Q 008363          168 FR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSD  245 (568)
Q Consensus       168 ~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~  245 (568)
                      .+  ++.++.+|...| +.+.|+   + .++++++.|.+|.+||+....   +..+.+.+.||...|+.+.|+.      
T Consensus       265 ~tge~l~tlihHceaV-Lhlrf~---n-g~mvtcSkDrsiaVWdm~sps---~it~rrVLvGHrAaVNvVdfd~------  330 (499)
T KOG0281|consen  265 NTGEPLNTLIHHCEAV-LHLRFS---N-GYMVTCSKDRSIAVWDMASPT---DITLRRVLVGHRAAVNVVDFDD------  330 (499)
T ss_pred             cCCchhhHHhhhccee-EEEEEe---C-CEEEEecCCceeEEEeccCch---HHHHHHHHhhhhhheeeecccc------
Confidence            87  788889999999 999998   4 499999999999999998652   2455667889999999998864      


Q ss_pred             CCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcc
Q 008363          246 SANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTK  324 (568)
Q Consensus       246 ~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~  324 (568)
                        ++|++++.|. |++|++.+. ..+.++.+|...|.|+.+.  ++++++|+.|.+|++||+.        .|.      
T Consensus       331 --kyIVsASgDRTikvW~~st~-efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~--------~G~------  391 (499)
T KOG0281|consen  331 --KYIVSASGDRTIKVWSTSTC-EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIE--------CGA------  391 (499)
T ss_pred             --ceEEEecCCceEEEEeccce-eeehhhhcccccceehhcc--CeEEEecCCCceEEEEecc--------ccH------
Confidence              5999999998 999999988 8999999999999999987  8999999999999999994        464      


Q ss_pred             ccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363          325 QQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       325 ~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~  368 (568)
                        +++.++||+.-|.++.|  +.+.|++|+.||+|++||+..+.
T Consensus       392 --cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aal  431 (499)
T KOG0281|consen  392 --CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAAL  431 (499)
T ss_pred             --HHHHHhchHHhhhheee--cCceeeeccccceEEEEeccccc
Confidence              45799999999999999  67889999999999999997654

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.6e-26  Score=237.57  Aligned_cols=263  Identities=20%  Similarity=0.284  Sum_probs=190.0

Q ss_pred             ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEec---------------------c----
Q 008363           97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYL---------------------S----  151 (568)
Q Consensus        97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~---------------------~----  151 (568)
                      +|.+ .||+++|+++|          +|||+|+.||.|+||.+..-.....-.+                     +    
T Consensus       265 ah~g-aIw~mKFS~DG----------KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~  333 (712)
T KOG0283|consen  265 AHKG-AIWAMKFSHDG----------KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKIS  333 (712)
T ss_pred             ccCC-cEEEEEeCCCC----------ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccc
Confidence            6888 88899999999          8999999999999999876111000000                     0    


Q ss_pred             --CC--ccCCCCceEEEeec-ce----ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCcee
Q 008363          152 --SM--KEGTDPRFVKLEPV-FR----CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPL  222 (568)
Q Consensus       152 --~~--~~~~~~~~v~~~~~-~~----~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~  222 (568)
                        ..  ..+.....+.+.+. +.    ....+.||++.| +.|.|+  . .++|++++.|.||+||++...      .++
T Consensus       334 ~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DI-LDlSWS--K-n~fLLSSSMDKTVRLWh~~~~------~CL  403 (712)
T KOG0283|consen  334 SRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADI-LDLSWS--K-NNFLLSSSMDKTVRLWHPGRK------ECL  403 (712)
T ss_pred             ccccccccccCCccccCCCccccccccchhhhhccchhh-eecccc--c-CCeeEeccccccEEeecCCCc------cee
Confidence              00  01111111111110 00    233458999999 999999  4 469999999999999999977      899


Q ss_pred             EEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 008363          223 LCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAM  301 (568)
Q Consensus       223 ~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I  301 (568)
                      .+| .|...|+||+|+|..     .+||++|+-|+ ||||++... + +.....-..-|++++|.|||++.++|+.+|.+
T Consensus       404 ~~F-~HndfVTcVaFnPvD-----DryFiSGSLD~KvRiWsI~d~-~-Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C  475 (712)
T KOG0283|consen  404 KVF-SHNDFVTCVAFNPVD-----DRYFISGSLDGKVRLWSISDK-K-VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYC  475 (712)
T ss_pred             eEE-ecCCeeEEEEecccC-----CCcEeecccccceEEeecCcC-e-eEeehhhhhhheeEEeccCCceEEEEEeccEE
Confidence            999 799999999999987     49999999999 999999875 3 33333445789999999999999999999999


Q ss_pred             EEEEccccccCCCCCCCCccCccccceEEEecC------CCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCCCeeeccCC
Q 008363          302 RIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS------SFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTAKAVEKDHS  374 (568)
Q Consensus       302 ~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h------~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~~~~~~~~~  374 (568)
                      ++|+.+...+.             .. ..+..|      ...|++++|.|.. ..|++.+.|..|+|||+.+..+.....
T Consensus       476 ~fY~t~~lk~~-------------~~-~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK  541 (712)
T KOG0283|consen  476 RFYDTEGLKLV-------------SD-FHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK  541 (712)
T ss_pred             EEEEccCCeEE-------------Ee-eeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhc
Confidence            99999543211             00 111111      1279999999875 457888889999999996655544332


Q ss_pred             -CCCcceeeeecccCCCCceEEcccCCCC
Q 008363          375 -RNRPMHFLCGSVTEDESAITVNTPLDNT  402 (568)
Q Consensus       375 -~~~~~~~~~~s~~~~~~~i~~~~~~~~~  402 (568)
                       -.....-.-++++.||..|++++-...+
T Consensus       542 G~~n~~SQ~~Asfs~Dgk~IVs~seDs~V  570 (712)
T KOG0283|consen  542 GFRNTSSQISASFSSDGKHIVSASEDSWV  570 (712)
T ss_pred             ccccCCcceeeeEccCCCEEEEeecCceE
Confidence             2222233456888899999988755555

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.95  E-value=1.1e-25  Score=206.79  Aligned_cols=206  Identities=17%  Similarity=0.263  Sum_probs=178.4

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC-CceeeEEeccCCccCCCCceEEEeeccee
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEPVFRC  170 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~~~~  170 (568)
                      +....+|.+ .|+.+.|+|+|          .+||+|+.|..|.||++.. -+....+                      
T Consensus        40 ~m~l~gh~g-eI~~~~F~P~g----------s~~aSgG~Dr~I~LWnv~gdceN~~~l----------------------   86 (338)
T KOG0265|consen   40 IMLLPGHKG-EIYTIKFHPDG----------SCFASGGSDRAIVLWNVYGDCENFWVL----------------------   86 (338)
T ss_pred             hhhcCCCcc-eEEEEEECCCC----------CeEeecCCcceEEEEeccccccceeee----------------------
Confidence            344578888 66699999999          7999999999999999765 2222222                      


Q ss_pred             cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363          171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI  250 (568)
Q Consensus       171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l  250 (568)
                          .+|.+.| +.+.|.  ++++.|++++.|.+|+.||++++      +.++.+++|..-|+++.-+..|     +.++
T Consensus        87 ----kgHsgAV-M~l~~~--~d~s~i~S~gtDk~v~~wD~~tG------~~~rk~k~h~~~vNs~~p~rrg-----~~lv  148 (338)
T KOG0265|consen   87 ----KGHSGAV-MELHGM--RDGSHILSCGTDKTVRGWDAETG------KRIRKHKGHTSFVNSLDPSRRG-----PQLV  148 (338)
T ss_pred             ----cccccee-Eeeeec--cCCCEEEEecCCceEEEEecccc------eeeehhccccceeeecCccccC-----CeEE
Confidence                7999999 999999  89999999999999999999988      8999999999999999855555     5889


Q ss_pred             EEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363          251 LTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH  329 (568)
Q Consensus       251 as~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~  329 (568)
                      .|+++|+ ++|||+|+. .++.++. ..-.++++.|..++..+++|+-|+.|++||+|+        +        ..++
T Consensus       149 ~SgsdD~t~kl~D~R~k-~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~--------~--------d~~~  210 (338)
T KOG0265|consen  149 CSGSDDGTLKLWDIRKK-EAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRK--------N--------DGLY  210 (338)
T ss_pred             EecCCCceEEEEeeccc-chhhccc-cceeEEEEEecccccceeeccccCceeeecccc--------C--------cceE
Confidence            9999999 999999976 6665553 355689999999999999999999999999976        2        3457


Q ss_pred             EEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          330 LVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       330 ~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                      ++.||..+|+.+..+|+|.++.+-+.|.++++||+..
T Consensus       211 ~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp  247 (338)
T KOG0265|consen  211 TLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP  247 (338)
T ss_pred             EeecccCceeeEEeccCCCccccccccceEEEEEecc
Confidence            9999999999999999999999999999999999963

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=2.1e-27  Score=222.81  Aligned_cols=286  Identities=15%  Similarity=0.170  Sum_probs=230.2

Q ss_pred             CCCcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------
Q 008363           86 DIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------  153 (568)
Q Consensus        86 ~~~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------  153 (568)
                      -...|.+..+.+|..|+- +++=+|...         ..+|+|+.||.|+|||+....++.++..|..            
T Consensus        53 ~fakPFv~~L~gHrdGV~-~lakhp~~l---------s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~  122 (433)
T KOG0268|consen   53 VFAKPFVGSLDGHRDGVS-CLAKHPNKL---------STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSF  122 (433)
T ss_pred             Hhhccchhhccccccccc-hhhcCcchh---------hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccce
Confidence            345677777889999766 999999875         7899999999999999999999988877764            


Q ss_pred             ccCCCCceEEEeeccee-cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCe
Q 008363          154 KEGTDPRFVKLEPVFRC-SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPI  232 (568)
Q Consensus       154 ~~~~~~~~v~~~~~~~~-~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V  232 (568)
                      +..++|..++.|.+... ..+..+ ...+ +.++-+  ..+..++|++.+  |.|||....      .|+..+.-....|
T Consensus       123 ~tvgdDKtvK~wk~~~~p~~tilg-~s~~-~gIdh~--~~~~~FaTcGe~--i~IWD~~R~------~Pv~smswG~Dti  190 (433)
T KOG0268|consen  123 FTVGDDKTVKQWKIDGPPLHTILG-KSVY-LGIDHH--RKNSVFATCGEQ--IDIWDEQRD------NPVSSMSWGADSI  190 (433)
T ss_pred             EEecCCcceeeeeccCCcceeeec-cccc-cccccc--cccccccccCce--eeecccccC------CccceeecCCCce
Confidence            56778888888875431 111111 1222 445433  445678888754  889998765      7888887778889


Q ss_pred             eEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccccc
Q 008363          233 RAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAY  311 (568)
Q Consensus       233 ~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~  311 (568)
                      .++.|+|..     ..+|++|+.|+ |.|||+|+. .|+..+. -.-.-+.|+|+|.+-.++++++|..++.||+|.+. 
T Consensus       191 ~svkfNpvE-----TsILas~~sDrsIvLyD~R~~-~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~-  262 (433)
T KOG0268|consen  191 SSVKFNPVE-----TSILASCASDRSIVLYDLRQA-SPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS-  262 (433)
T ss_pred             eEEecCCCc-----chheeeeccCCceEEEecccC-Cccceee-eeccccceecCccccceeeccccccceehhhhhhc-
Confidence            999999997     38899998888 999999988 6664432 12334789999988788888999999999999876 


Q ss_pred             CCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCC
Q 008363          312 DVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDES  391 (568)
Q Consensus       312 ~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~  391 (568)
                                    .++..+.+|.++|.+++|+|.|+-+++||.|.+|+||.+..+.....+-..+..+..|..++.|..
T Consensus       263 --------------~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsk  328 (433)
T KOG0268|consen  263 --------------RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSK  328 (433)
T ss_pred             --------------ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEecccc
Confidence                          556799999999999999999999999999999999999988877777778999999999999999


Q ss_pred             ceEEcccCCCCCcccccccccccc
Q 008363          392 AITVNTPLDNTPVPLKKTVHDAGE  415 (568)
Q Consensus       392 ~i~~~~~~~~~~~~~k~~~~~~g~  415 (568)
                      .|.+|+...++.+....+...+|.
T Consensus       329 yi~SGSdd~nvRlWka~Aseklgv  352 (433)
T KOG0268|consen  329 YIISGSDDGNVRLWKAKASEKLGV  352 (433)
T ss_pred             EEEecCCCcceeeeecchhhhcCC
Confidence            999999999998887766555554

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=3.5e-26  Score=232.28  Aligned_cols=230  Identities=16%  Similarity=0.218  Sum_probs=198.5

Q ss_pred             EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc----eeeEEeccCC---------------c
Q 008363           94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR----TMKAIYLSSM---------------K  154 (568)
Q Consensus        94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~----~~~~l~~~~~---------------~  154 (568)
                      ...+|+. .|.++....+|          -+|++|+.|.+|++|.+..+.    ++....+|..               +
T Consensus       360 ii~GH~e-~vlSL~~~~~g----------~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffv  428 (775)
T KOG0319|consen  360 IIPGHTE-AVLSLDVWSSG----------DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFV  428 (775)
T ss_pred             EEeCchh-heeeeeecccC----------cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEE
Confidence            5679999 45488855555          599999999999999884422    3333344443               7


Q ss_pred             cCCCCceEEEeecce-----------ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeE
Q 008363          155 EGTDPRFVKLEPVFR-----------CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLL  223 (568)
Q Consensus       155 ~~~~~~~v~~~~~~~-----------~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~  223 (568)
                      +++.|.++++|+...           +......|...| .||+.+  |+..+||+||.|.+.+||++...      ..+.
T Consensus       429 svS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdI-N~Vaia--~ndkLiAT~SqDktaKiW~le~~------~l~~  499 (775)
T KOG0319|consen  429 SVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDI-NCVAIA--PNDKLIATGSQDKTAKIWDLEQL------RLLG  499 (775)
T ss_pred             EecCCceEEEecCCCcccccccceehhhHHHHhhcccc-cceEec--CCCceEEecccccceeeecccCc------eEEE
Confidence            889999999998765           222445799999 999988  77889999999999999999955      8889


Q ss_pred             EeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 008363          224 CFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMR  302 (568)
Q Consensus       224 ~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~  302 (568)
                      ++.+|+..|.+|.|+|..      +++||+|.|+ |+||.+.+. .++.+|.||...|..+.|-.++..|++++.||.|+
T Consensus       500 vLsGH~RGvw~V~Fs~~d------q~laT~SgD~TvKIW~is~f-SClkT~eGH~~aVlra~F~~~~~qliS~~adGliK  572 (775)
T KOG0319|consen  500 VLSGHTRGVWCVSFSKND------QLLATCSGDKTVKIWSISTF-SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIK  572 (775)
T ss_pred             EeeCCccceEEEEecccc------ceeEeccCCceEEEEEeccc-eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEE
Confidence            999999999999999998      8999999999 999999987 99999999999999999999999999999999999


Q ss_pred             EEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          303 IVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       303 lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                      ||++.        ++        .|+.++..|+..||+++.++.+.+++||+.||.|.+|.=.+
T Consensus       573 lWnik--------t~--------eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  573 LWNIK--------TN--------ECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             EEecc--------ch--------hhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence            99994        35        45579999999999999999999999999999999996543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.94  E-value=1.7e-24  Score=243.85  Aligned_cols=270  Identities=15%  Similarity=0.201  Sum_probs=204.8

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC----c----eeeEEeccC--------------C
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL----R----TMKAIYLSS--------------M  153 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~----~----~~~~l~~~~--------------~  153 (568)
                      ..|.+ .|++++|+|++          .+||+|+.|+.|+||++...    .    ....+..+.              -
T Consensus       480 ~~~~~-~V~~i~fs~dg----------~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l  548 (793)
T PLN00181        480 LNSSN-LVCAIGFDRDG----------EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQV  548 (793)
T ss_pred             cCCCC-cEEEEEECCCC----------CEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEE
Confidence            34777 66699999999          89999999999999997531    1    111111111              1


Q ss_pred             ccCCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCC
Q 008363          154 KEGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLP  231 (568)
Q Consensus       154 ~~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~  231 (568)
                      +.++.++.+++|+..+  ....+.+|...| ++++|+|. ++.+|++|+.||+|++||+.++      ..+..+..| ..
T Consensus       549 as~~~Dg~v~lWd~~~~~~~~~~~~H~~~V-~~l~~~p~-~~~~L~Sgs~Dg~v~iWd~~~~------~~~~~~~~~-~~  619 (793)
T PLN00181        549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRV-WSIDYSSA-DPTLLASGSDDGSVKLWSINQG------VSIGTIKTK-AN  619 (793)
T ss_pred             EEEeCCCeEEEEECCCCeEEEEecCCCCCE-EEEEEcCC-CCCEEEEEcCCCEEEEEECCCC------cEEEEEecC-CC
Confidence            4677899999999865  455667999999 99999832 5789999999999999999866      667777654 67


Q ss_pred             eeEEEEcc-CCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccc
Q 008363          232 IRAVSWAP-AESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKA  309 (568)
Q Consensus       232 V~~v~~~p-~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~  309 (568)
                      |.++.|++ ++      .+|++|+.|+ |++||++....++..+.+|...|+++.|. ++.+|++++.|++|+|||++..
T Consensus       620 v~~v~~~~~~g------~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~  692 (793)
T PLN00181        620 ICCVQFPSESG------RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMS  692 (793)
T ss_pred             eEEEEEeCCCC------CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCC
Confidence            99999965 45      8999999999 99999998755677788999999999997 6889999999999999999642


Q ss_pred             ccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc--CC----------CCC
Q 008363          310 AYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD--HS----------RNR  377 (568)
Q Consensus       310 ~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~--~~----------~~~  377 (568)
                      .     .+     ....++..+.+|...+.+++|+|++.+|++|+.|+.|++|+.........  ..          ...
T Consensus       693 ~-----~~-----~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~  762 (793)
T PLN00181        693 I-----SG-----INETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDA  762 (793)
T ss_pred             c-----cc-----cCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCC
Confidence            1     00     01134578999999999999999999999999999999999764321100  00          011


Q ss_pred             cceeeeecccCCCCceEEcccCCCC
Q 008363          378 PMHFLCGSVTEDESAITVNTPLDNT  402 (568)
Q Consensus       378 ~~~~~~~s~~~~~~~i~~~~~~~~~  402 (568)
                      ...+.+..+++++..++.+...+.+
T Consensus       763 ~~~V~~v~ws~~~~~lva~~~dG~I  787 (793)
T PLN00181        763 SQFISSVCWRGQSSTLVAANSTGNI  787 (793)
T ss_pred             CcEEEEEEEcCCCCeEEEecCCCcE
Confidence            1234556677777777766655544

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=1.5e-24  Score=228.03  Aligned_cols=220  Identities=15%  Similarity=0.197  Sum_probs=164.7

Q ss_pred             CcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCce-eeEEeccCCccCCCCceEEEee
Q 008363           88 ALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRT-MKAIYLSSMKEGTDPRFVKLEP  166 (568)
Q Consensus        88 ~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~-~~~l~~~~~~~~~~~~~v~~~~  166 (568)
                      ..+.+..+.+|.+ .|++++|+|+.+         .+||+|+.||+|+|||+.++.. ...+                  
T Consensus        63 r~~~v~~L~gH~~-~V~~lafsP~~~---------~lLASgS~DgtIrIWDi~t~~~~~~~i------------------  114 (568)
T PTZ00420         63 RKPPVIKLKGHTS-SILDLQFNPCFS---------EILASGSEDLTIRVWEIPHNDESVKEI------------------  114 (568)
T ss_pred             CCceEEEEcCCCC-CEEEEEEcCCCC---------CEEEEEeCCCeEEEEECCCCCcccccc------------------
Confidence            3455666789998 555999999743         7999999999999999986422 1110                  


Q ss_pred             cceecccccCCcCccceEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCC
Q 008363          167 VFRCSMLKCGGTQSIPLTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSD  245 (568)
Q Consensus       167 ~~~~~~~~~~h~~~V~~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~  245 (568)
                       ......+.+|...| .+++|+  |++. +|++|+.||+|+|||+.++      ..+..+. |...|.+++|+|+|    
T Consensus       115 -~~p~~~L~gH~~~V-~sVaf~--P~g~~iLaSgS~DgtIrIWDl~tg------~~~~~i~-~~~~V~SlswspdG----  179 (568)
T PTZ00420        115 -KDPQCILKGHKKKI-SIIDWN--PMNYYIMCSSGFDSFVNIWDIENE------KRAFQIN-MPKKLSSLKWNIKG----  179 (568)
T ss_pred             -ccceEEeecCCCcE-EEEEEC--CCCCeEEEEEeCCCeEEEEECCCC------cEEEEEe-cCCcEEEEEECCCC----
Confidence             00111227899999 999999  6665 4679999999999999876      4555554 56789999999999    


Q ss_pred             CCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEE-----EEEcCCCCEEEEEeCCC----cEEEEEccccccCCCC
Q 008363          246 SANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYG-----LDWLPDPGCVILSFDDG----AMRIVSLLKAAYDVPA  315 (568)
Q Consensus       246 ~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~-----l~~sp~~~~l~s~~~dg----~I~lwd~~~~~~~~~~  315 (568)
                        .+|++++.|+ |+|||++++ ..+..+.+|.+.+.+     ..|++++.+|++++.|+    .|+|||++...     
T Consensus       180 --~lLat~s~D~~IrIwD~Rsg-~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~-----  251 (568)
T PTZ00420        180 --NLLSGTCVGKHMHIIDPRKQ-EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT-----  251 (568)
T ss_pred             --CEEEEEecCCEEEEEECCCC-cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC-----
Confidence              8999999998 999999987 777788899876543     23468999999988764    79999997532     


Q ss_pred             CCCCccCccccceEEE--ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363          316 TGKPFAGTKQQGLHLV--NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       316 ~g~~~~~~~~~~l~~~--~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~  368 (568)
                        ++        +..+  ..+.+.+......+++.++++|+.|++|++|++..+.
T Consensus       252 --~p--------l~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        252 --SA--------LVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             --Cc--------eEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence              22        3333  3334444444444558899999999999999997653

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=3.3e-25  Score=225.27  Aligned_cols=271  Identities=17%  Similarity=0.181  Sum_probs=217.1

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCCc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDPR  160 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~~  160 (568)
                      ..|..+++. +++|.-...         ++||+++..+.+++|++.+..|. .+.+|+.              ++++.|.
T Consensus       319 ivG~ndEI~-Dm~~lG~e~---------~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~  387 (775)
T KOG0319|consen  319 IVGYNDEIL-DMKFLGPEE---------SHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDK  387 (775)
T ss_pred             hcCCchhhe-eeeecCCcc---------ceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCc
Confidence            345566455 888864433         79999999999999999997777 6677765              5788999


Q ss_pred             eEEEeecce------ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCC---CceeEEeeCCCCC
Q 008363          161 FVKLEPVFR------CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSID---SRPLLCFSADTLP  231 (568)
Q Consensus       161 ~v~~~~~~~------~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~---~~~~~~~~~h~~~  231 (568)
                      .+++|....      |.....||+..| .+|+++.. .-.+|+++|.|++|++|++...+....   ..+..+...|...
T Consensus       388 svilWr~~~~~~~~~~~a~~~gH~~sv-gava~~~~-~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKd  465 (775)
T KOG0319|consen  388 SVILWRLNNNCSKSLCVAQANGHTNSV-GAVAGSKL-GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKD  465 (775)
T ss_pred             eEEEEEecCCcchhhhhhhhccccccc-ceeeeccc-CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhccc
Confidence            999997622      555667999999 99998733 235899999999999999986322111   1111244579999


Q ss_pred             eeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccc
Q 008363          232 IRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAA  310 (568)
Q Consensus       232 V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~  310 (568)
                      |++|+++|+.      .+|||||.|. .+||++.+. ..+.++.+|...|.++.|+|..+.+++++.|++|+||.+.++ 
T Consensus       466 IN~Vaia~nd------kLiAT~SqDktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f-  537 (775)
T KOG0319|consen  466 INCVAIAPND------KLIATGSQDKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF-  537 (775)
T ss_pred             ccceEecCCC------ceEEecccccceeeecccCc-eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc-
Confidence            9999999998      8999999999 999999955 888999999999999999999999999999999999999553 


Q ss_pred             cCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCC
Q 008363          311 YDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDE  390 (568)
Q Consensus       311 ~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~  390 (568)
                                     .|+.+|.||+..|..+.|-.++..|++++.||.|++|++.+...+.....+.-..+.. +.++..
T Consensus       538 ---------------SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL-~~~~~~  601 (775)
T KOG0319|consen  538 ---------------SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWAL-SVSPLL  601 (775)
T ss_pred             ---------------eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEE-eecCcc
Confidence                           4678999999999999999999999999999999999999999988777665554442 234444


Q ss_pred             CceEEcccCCCC
Q 008363          391 SAITVNTPLDNT  402 (568)
Q Consensus       391 ~~i~~~~~~~~~  402 (568)
                      ..+..+...+.+
T Consensus       602 ~~~~tgg~Dg~i  613 (775)
T KOG0319|consen  602 DMFVTGGGDGRI  613 (775)
T ss_pred             ceeEecCCCeEE
Confidence            455554444444

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=7.1e-25  Score=198.68  Aligned_cols=222  Identities=18%  Similarity=0.314  Sum_probs=177.5

Q ss_pred             EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC--CceeeEEeccCCccCCCCceEEEeecceec
Q 008363           94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL--LRTMKAIYLSSMKEGTDPRFVKLEPVFRCS  171 (568)
Q Consensus        94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~--~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~  171 (568)
                      +.-+|.. .|++++|+|.|          ++||+++.|.++.||.-..  .+++.+|                       
T Consensus        56 ld~~hkr-sVRsvAwsp~g----------~~La~aSFD~t~~Iw~k~~~efecv~~l-----------------------  101 (312)
T KOG0645|consen   56 LDDGHKR-SVRSVAWSPHG----------RYLASASFDATVVIWKKEDGEFECVATL-----------------------  101 (312)
T ss_pred             ccccchh-eeeeeeecCCC----------cEEEEeeccceEEEeecCCCceeEEeee-----------------------
Confidence            3347888 77799999999          8999999999999998765  3444444                       


Q ss_pred             ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363          172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la  251 (568)
                         .||...| .|++|+  ++|.+||+++.|..|-||.+....   +..+...+..|+..|..+.|+|..      .+|+
T Consensus       102 ---EGHEnEV-K~Vaws--~sG~~LATCSRDKSVWiWe~dedd---Efec~aVL~~HtqDVK~V~WHPt~------dlL~  166 (312)
T KOG0645|consen  102 ---EGHENEV-KCVAWS--ASGNYLATCSRDKSVWIWEIDEDD---EFECIAVLQEHTQDVKHVIWHPTE------DLLF  166 (312)
T ss_pred             ---eccccce-eEEEEc--CCCCEEEEeeCCCeEEEEEecCCC---cEEEEeeeccccccccEEEEcCCc------ceeE
Confidence               8999999 999999  899999999999999999998442   357888999999999999999998      8999


Q ss_pred             EEcCCC-EEEEECCCC--CcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCcc-------
Q 008363          252 TAGHGG-LKFWDIRDP--FRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFA-------  321 (568)
Q Consensus       252 s~s~d~-v~lwD~~~~--~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~-------  321 (568)
                      |+|+|. |++|+-...  ..++.++.+|...|.+++|+|.|..|++++.|++|+||-+...-... ..+..+.       
T Consensus       167 S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~-~sr~~Y~v~W~~~~  245 (312)
T KOG0645|consen  167 SCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGM-HSRALYDVPWDNGV  245 (312)
T ss_pred             EeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchh-cccceEeeeecccc
Confidence            999998 999987622  27789999999999999999999999999999999999843110000 0111110       


Q ss_pred             --------------------Cccccce-EEEecCCCCEEEEEEecC-CCEEEEEeCCCeEEEEEcC
Q 008363          322 --------------------GTKQQGL-HLVNCSSFAIWSVQVSRL-TGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       322 --------------------~~~~~~l-~~~~~h~~~V~~l~~sp~-~~~l~s~s~Dg~v~iwd~~  365 (568)
                                          +.....+ ..-..|...|++++|.|. ..+|++|+.||.|++|.+.
T Consensus       246 IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  246 IASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             eEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence                                0000001 122367889999999996 6899999999999999874

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.94  E-value=3.4e-24  Score=210.15  Aligned_cols=262  Identities=19%  Similarity=0.295  Sum_probs=209.0

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCCc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDPR  160 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~~  160 (568)
                      +.+|.+ .+.+++|+|++          .+|++++.||.|++|++.++.....+..+..              +.++.++
T Consensus         5 ~~~h~~-~i~~~~~~~~~----------~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~   73 (289)
T cd00200           5 LKGHTG-GVTCVAFSPDG----------KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDK   73 (289)
T ss_pred             hcccCC-CEEEEEEcCCC----------CEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCC
Confidence            347887 56699999998          7999999999999999988765555554433              3455688


Q ss_pred             eEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEc
Q 008363          161 FVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWA  238 (568)
Q Consensus       161 ~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~  238 (568)
                      .+.+|+...  .......|...+ .++.|+  +++.++++++.||.|.+||+.+.      .....+..|...|.+++|+
T Consensus        74 ~i~i~~~~~~~~~~~~~~~~~~i-~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~i~~~~~~  144 (289)
T cd00200          74 TIRLWDLETGECVRTLTGHTSYV-SSVAFS--PDGRILSSSSRDKTIKVWDVETG------KCLTTLRGHTDWVNSVAFS  144 (289)
T ss_pred             eEEEEEcCcccceEEEeccCCcE-EEEEEc--CCCCEEEEecCCCeEEEEECCCc------EEEEEeccCCCcEEEEEEc
Confidence            888888875  444556788888 999999  66778888888999999999865      7777888899999999999


Q ss_pred             cCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCC
Q 008363          239 PAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATG  317 (568)
Q Consensus       239 p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g  317 (568)
                      |++      .++++++.++ |++||++.. ..+..+..|...|.+++|+|+++.|++++.|+.|++||++.        +
T Consensus       145 ~~~------~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~--------~  209 (289)
T cd00200         145 PDG------TFVASSSQDGTIKLWDLRTG-KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST--------G  209 (289)
T ss_pred             CcC------CEEEEEcCCCcEEEEEcccc-ccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCC--------C
Confidence            987      7899888777 999999976 66777778888999999999999999999999999999953        3


Q ss_pred             CCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363          318 KPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNT  397 (568)
Q Consensus       318 ~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~  397 (568)
                      +.        +..+..|...|.+++|+|++.++++++.||.|++|++.++........+ .....+..+++++..+.+++
T Consensus       210 ~~--------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~  280 (289)
T cd00200         210 KC--------LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH-TNSVTSLAWSPDGKRLASGS  280 (289)
T ss_pred             ce--------ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc-CCcEEEEEECCCCCEEEEec
Confidence            23        3466678889999999999888888888999999999876655443322 22345556777766666655


Q ss_pred             cCC
Q 008363          398 PLD  400 (568)
Q Consensus       398 ~~~  400 (568)
                      ...
T Consensus       281 ~d~  283 (289)
T cd00200         281 ADG  283 (289)
T ss_pred             CCC
Confidence            433

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.8e-25  Score=230.50  Aligned_cols=232  Identities=13%  Similarity=0.221  Sum_probs=202.6

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCCceEEEeec
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDPRFVKLEPV  167 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~~~v~~~~~  167 (568)
                      .+..++|+|..|          +++++-..|.|++||..-+.++..+..|..              ++|++|-.|++|..
T Consensus        11 RvKglsFHP~rP----------wILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY   80 (1202)
T KOG0292|consen   11 RVKGLSFHPKRP----------WILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY   80 (1202)
T ss_pred             cccceecCCCCC----------EEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence            555899999996          799999999999999999888888877766              89999999999987


Q ss_pred             ce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCC
Q 008363          168 FR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSD  245 (568)
Q Consensus       168 ~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~  245 (568)
                      ..  |+.++.||-..| .++.|+  +.--+|+++|.|.||+||+..+.      +++.++.||...|.|..|+|..    
T Consensus        81 k~rrclftL~GHlDYV-Rt~~FH--heyPWIlSASDDQTIrIWNwqsr------~~iavltGHnHYVMcAqFhptE----  147 (1202)
T KOG0292|consen   81 KTRRCLFTLLGHLDYV-RTVFFH--HEYPWILSASDDQTIRIWNWQSR------KCIAVLTGHNHYVMCAQFHPTE----  147 (1202)
T ss_pred             ccceehhhhcccccee-EEeecc--CCCceEEEccCCCeEEEEeccCC------ceEEEEecCceEEEeeccCCcc----
Confidence            66  999999999999 999999  66679999999999999999987      9999999999999999999987    


Q ss_pred             CCcEEEEEcCCC-EEEEECCCCC----------------------------cceeeeCCCCCCeEEEEEcCCCCEEEEEe
Q 008363          246 SANVILTAGHGG-LKFWDIRDPF----------------------------RPLWDIHPAPKFIYGLDWLPDPGCVILSF  296 (568)
Q Consensus       246 ~~~~las~s~d~-v~lwD~~~~~----------------------------~~~~~~~~h~~~i~~l~~sp~~~~l~s~~  296 (568)
                        .+++|+|-|. ||+||+..-.                            ...+.+.+|...|+-++|+|.-..|++|+
T Consensus       148 --DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~  225 (1202)
T KOG0292|consen  148 --DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA  225 (1202)
T ss_pred             --ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC
Confidence              8999999998 9999985421                            00145679999999999999999999999


Q ss_pred             CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          297 DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       297 ~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                      +|+.|++|.+...+              --.+-+..+|...|.++-|+|...+|++.|.|++|+|||++...-.+.
T Consensus       226 DDRqVKlWrmnetK--------------aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~t  287 (1202)
T KOG0292|consen  226 DDRQVKLWRMNETK--------------AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQT  287 (1202)
T ss_pred             CcceeeEEEecccc--------------ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceee
Confidence            99999999984311              123457789999999999999999999999999999999986654443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.4e-25  Score=221.96  Aligned_cols=231  Identities=13%  Similarity=0.197  Sum_probs=199.6

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCC
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGT  157 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~  157 (568)
                      ++..+.-..-+|++.+|-+..          +++++|++|..|+||+..+++.+..+..|..              .+++
T Consensus        47 mVksfeV~~~PvRa~kfiaRk----------nWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsS  116 (794)
T KOG0276|consen   47 MVKSFEVSEVPVRAAKFIARK----------NWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSS  116 (794)
T ss_pred             eeeeeeecccchhhheeeecc----------ceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecC
Confidence            333444444577788898887          8999999999999999999999999988876              6889


Q ss_pred             CCceEEEeecce---ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeE
Q 008363          158 DPRFVKLEPVFR---CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRA  234 (568)
Q Consensus       158 ~~~~v~~~~~~~---~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~  234 (568)
                      +|-.+++|+-..   |.+++.||+..| ++|+|+|. |.+.+|++|-|++|+||.+.+.      .+..++.+|...|+|
T Consensus       117 DDm~iKlW~we~~wa~~qtfeGH~HyV-Mqv~fnPk-D~ntFaS~sLDrTVKVWslgs~------~~nfTl~gHekGVN~  188 (794)
T KOG0276|consen  117 DDMTIKLWDWENEWACEQTFEGHEHYV-MQVAFNPK-DPNTFASASLDRTVKVWSLGSP------HPNFTLEGHEKGVNC  188 (794)
T ss_pred             CccEEEEeeccCceeeeeEEcCcceEE-EEEEecCC-CccceeeeeccccEEEEEcCCC------CCceeeeccccCcce
Confidence            999999998765   899999999999 99999976 5579999999999999999877      788899999999999


Q ss_pred             EEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCC
Q 008363          235 VSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDV  313 (568)
Q Consensus       235 v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~  313 (568)
                      |.|-+.|    ...+|+||++|. |+|||.++. .|+.++.+|...|..++|+|.-..|++|+.||+|+||+..+..   
T Consensus       189 Vdyy~~g----dkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~---  260 (794)
T KOG0276|consen  189 VDYYTGG----DKPYLISGADDLTIKVWDYQTK-SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK---  260 (794)
T ss_pred             EEeccCC----CcceEEecCCCceEEEeecchH-HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCccee---
Confidence            9999877    446999999998 999999987 9999999999999999999999999999999999999985433   


Q ss_pred             CCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEE
Q 008363          314 PATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHR  361 (568)
Q Consensus       314 ~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~i  361 (568)
                           +        -.++...-..|||++-.+.++.++.|...|.|.+
T Consensus       261 -----l--------E~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  261 -----L--------EKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             -----h--------hhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence                 1        1244455678999999998888888887776654

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.94  E-value=2.1e-24  Score=211.58  Aligned_cols=250  Identities=17%  Similarity=0.197  Sum_probs=198.9

Q ss_pred             ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363           97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG  176 (568)
Q Consensus        97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~  176 (568)
                      .|.. .|.+++|+|+|          .++|+.+.||.|.|||-.+++.+..|...                       .+
T Consensus       188 ~Hsk-FV~~VRysPDG----------~~Fat~gsDgki~iyDGktge~vg~l~~~-----------------------~a  233 (603)
T KOG0318|consen  188 EHSK-FVNCVRYSPDG----------SRFATAGSDGKIYIYDGKTGEKVGELEDS-----------------------DA  233 (603)
T ss_pred             cccc-ceeeEEECCCC----------CeEEEecCCccEEEEcCCCccEEEEecCC-----------------------CC
Confidence            4555 88899999999          89999999999999999999998887432                       68


Q ss_pred             CcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCC-------------------------------------CCC
Q 008363          177 GTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSS-------------------------------------IDS  219 (568)
Q Consensus       177 h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~-------------------------------------~~~  219 (568)
                      |.+.| ++|+|+  ||+..|++++.|.+++|||+.+..+.                                     .+.
T Consensus       234 HkGsI-falsWs--PDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~  310 (603)
T KOG0318|consen  234 HKGSI-FALSWS--PDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDP  310 (603)
T ss_pred             ccccE-EEEEEC--CCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCC
Confidence            99999 999999  99999999999999999999876531                                     223


Q ss_pred             ceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCccee----------ee---------------
Q 008363          220 RPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLW----------DI---------------  273 (568)
Q Consensus       220 ~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~----------~~---------------  273 (568)
                      .++..+.+|...|++++.++++      .+|.||+.|| |.-||..++.....          .+               
T Consensus       311 ~~~~~i~GHnK~ITaLtv~~d~------~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd  384 (603)
T KOG0318|consen  311 SVLKVISGHNKSITALTVSPDG------KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDD  384 (603)
T ss_pred             ChhheecccccceeEEEEcCCC------CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCC
Confidence            3566788999999999999999      8999999999 99999876521100          00               


Q ss_pred             -----------------------------------------------CCC--------CCCeEEEEEcCCCCEEEEEeCC
Q 008363          274 -----------------------------------------------HPA--------PKFIYGLDWLPDPGCVILSFDD  298 (568)
Q Consensus       274 -----------------------------------------------~~h--------~~~i~~l~~sp~~~~l~s~~~d  298 (568)
                                                                     +.+        .-...+++++|++..++.|+.|
T Consensus       385 ~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~D  464 (603)
T KOG0318|consen  385 TLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQD  464 (603)
T ss_pred             eEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEeccc
Confidence                                                           001        0123467888999999999999


Q ss_pred             CcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCc
Q 008363          299 GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRP  378 (568)
Q Consensus       299 g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~  378 (568)
                      +.|+||.+..        +.+      ........|.++|++++|||++.|||+|...+.+.+||+.+.......-.--.
T Consensus       465 gkvhvysl~g--------~~l------~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHt  530 (603)
T KOG0318|consen  465 GKVHVYSLSG--------DEL------KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHT  530 (603)
T ss_pred             ceEEEEEecC--------Ccc------cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeee
Confidence            9999999942        121      22235667999999999999999999999999999999988766322112234


Q ss_pred             ceeeeecccCCCCceEEcccCCCCC
Q 008363          379 MHFLCGSVTEDESAITVNTPLDNTP  403 (568)
Q Consensus       379 ~~~~~~s~~~~~~~i~~~~~~~~~~  403 (568)
                      ..+.|.++++++..++.++-...+-
T Consensus       531 akI~~~aWsP~n~~vATGSlDt~Vi  555 (603)
T KOG0318|consen  531 AKINCVAWSPNNKLVATGSLDTNVI  555 (603)
T ss_pred             eeEEEEEeCCCceEEEeccccceEE
Confidence            5678999999999999887666553

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=4.4e-26  Score=204.58  Aligned_cols=209  Identities=18%  Similarity=0.303  Sum_probs=180.9

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS  171 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~  171 (568)
                      +..+..|..++. ++.|++...         ..+++++-||+|+||+...++.++++                       
T Consensus        97 i~~~kEH~~EV~-Svdwn~~~r---------~~~ltsSWD~TiKLW~~~r~~Sv~Tf-----------------------  143 (311)
T KOG0277|consen   97 IHKFKEHKREVY-SVDWNTVRR---------RIFLTSSWDGTIKLWDPNRPNSVQTF-----------------------  143 (311)
T ss_pred             hhHHHhhhhheE-Eeccccccc---------eeEEeeccCCceEeecCCCCcceEee-----------------------
Confidence            455678999666 999999765         67888899999999999998888887                       


Q ss_pred             ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363          172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la  251 (568)
                         .||...| +...|+|+. .+++++++.||++++||++..     ++.+. +..|...|.++.|+...     +++++
T Consensus       144 ---~gh~~~I-y~a~~sp~~-~nlfas~Sgd~~l~lwdvr~~-----gk~~~-i~ah~~Eil~cdw~ky~-----~~vl~  207 (311)
T KOG0277|consen  144 ---NGHNSCI-YQAAFSPHI-PNLFASASGDGTLRLWDVRSP-----GKFMS-IEAHNSEILCCDWSKYN-----HNVLA  207 (311)
T ss_pred             ---cCCccEE-EEEecCCCC-CCeEEEccCCceEEEEEecCC-----CceeE-EEeccceeEeecccccC-----CcEEE
Confidence               8899999 999999884 469999999999999999866     24444 88999999999999886     58999


Q ss_pred             EEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363          252 TAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDP-GCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH  329 (568)
Q Consensus       252 s~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~-~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~  329 (568)
                      ||+.|+ |+.||+|.-..++..+.+|.-.|..+.|||.. ..|++++.|-+++|||.....               .++.
T Consensus       208 Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d---------------s~~e  272 (311)
T KOG0277|consen  208 TGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD---------------SAIE  272 (311)
T ss_pred             ecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch---------------hhhh
Confidence            999999 99999999888999999999999999999975 466778899999999995422               3345


Q ss_pred             EEecCCCCEEEEEEecC-CCEEEEEeCCCeEEEEEc
Q 008363          330 LVNCSSFAIWSVQVSRL-TGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       330 ~~~~h~~~V~~l~~sp~-~~~l~s~s~Dg~v~iwd~  364 (568)
                      ++..|+.-|..+.|++. +.++|+++.|+.++||+-
T Consensus       273 ~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  273 TVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhccceEEeccccccccCceeeecccccceeeecc
Confidence            77789999999999987 589999999999999984

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.94  E-value=4.8e-25  Score=208.28  Aligned_cols=242  Identities=16%  Similarity=0.224  Sum_probs=198.4

Q ss_pred             CcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------
Q 008363           88 ALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------  153 (568)
Q Consensus        88 ~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------  153 (568)
                      .-|....++.|+. .|.+|.-.  +          ++|++|+.||.++|||... ++...+.+|..              
T Consensus        94 ~aP~pl~~~~hdD-WVSsv~~~--~----------~~IltgsYDg~~riWd~~G-k~~~~~~Ght~~ik~v~~v~~n~~~  159 (423)
T KOG0313|consen   94 TAPKPLQCFLHDD-WVSSVKGA--S----------KWILTGSYDGTSRIWDLKG-KSIKTIVGHTGPIKSVAWVIKNSSS  159 (423)
T ss_pred             CCCCccccccchh-hhhhhccc--C----------ceEEEeecCCeeEEEecCC-ceEEEEecCCcceeeeEEEecCCcc
Confidence            3455666778888 77677666  3          6899999999999999875 77778888776              


Q ss_pred             ---ccCCCCceEEEeecce------ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCC---------
Q 008363          154 ---KEGTDPRFVKLEPVFR------CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDS---------  215 (568)
Q Consensus       154 ---~~~~~~~~v~~~~~~~------~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~---------  215 (568)
                         ++++.++.+.+|....      +.....||...| -+|+-.  ++|..+++|+.|.+|.||+..+...         
T Consensus       160 ~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V-~sVsv~--~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~  236 (423)
T KOG0313|consen  160 CLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSV-DSVSVD--SSGTRFCSGSWDTMLKIWSVETDEEDELESSSNR  236 (423)
T ss_pred             ceEEEecCCceEEEEEecCchhhhhHHhHhcccccce-eEEEec--CCCCeEEeecccceeeecccCCCccccccccchh
Confidence               5678999999987654      333445999999 999966  8999999999999999999332211         


Q ss_pred             ----------CCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEE
Q 008363          216 ----------SIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLD  284 (568)
Q Consensus       216 ----------~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~  284 (568)
                                .....++..+.+|..+|.+|.|++.       ..+.+++.|. |+.||+.++ .....+.+ ...++++.
T Consensus       237 rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~-------~v~yS~SwDHTIk~WDletg-~~~~~~~~-~ksl~~i~  307 (423)
T KOG0313|consen  237 RRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA-------TVIYSVSWDHTIKVWDLETG-GLKSTLTT-NKSLNCIS  307 (423)
T ss_pred             hhhhhhhhhcccccCceEEecccccceeeEEEcCC-------CceEeecccceEEEEEeecc-cceeeeec-CcceeEee
Confidence                      1234578889999999999999996       5999999998 999999988 55555533 55689999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEE
Q 008363          285 WLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQ  363 (568)
Q Consensus       285 ~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd  363 (568)
                      ++|..++|++|+.|..|+|||.|+..      |..+       .++|.+|...|.++.|+|.. .+|++++.|+++++||
T Consensus       308 ~~~~~~Ll~~gssdr~irl~DPR~~~------gs~v-------~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWD  374 (423)
T KOG0313|consen  308 YSPLSKLLASGSSDRHIRLWDPRTGD------GSVV-------SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWD  374 (423)
T ss_pred             cccccceeeecCCCCceeecCCCCCC------Ccee-------EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEE
Confidence            99999999999999999999998743      5544       36899999999999999986 7899999999999999


Q ss_pred             cCCCe
Q 008363          364 LTAKA  368 (568)
Q Consensus       364 ~~~~~  368 (568)
                      +++..
T Consensus       375 vRS~k  379 (423)
T KOG0313|consen  375 VRSTK  379 (423)
T ss_pred             eccCC
Confidence            97654

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.93  E-value=6.1e-25  Score=212.59  Aligned_cols=229  Identities=14%  Similarity=0.283  Sum_probs=184.0

Q ss_pred             EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363           94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML  173 (568)
Q Consensus        94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~  173 (568)
                      .+.+|..+. +.++|++...         ..|++++.|++|.+||+......             +..+.      ....
T Consensus       172 ~L~gH~~eg-~glsWn~~~~---------g~Lls~~~d~~i~lwdi~~~~~~-------------~~~~~------p~~~  222 (422)
T KOG0264|consen  172 RLKGHEKEG-YGLSWNRQQE---------GTLLSGSDDHTICLWDINAESKE-------------DKVVD------PKTI  222 (422)
T ss_pred             EEEeecccc-cccccccccc---------eeEeeccCCCcEEEEeccccccC-------------Ccccc------ceEE
Confidence            457888843 4899999886         79999999999999999873321             00111      1122


Q ss_pred             ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363          174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA  253 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~  253 (568)
                      +.+|...| -.++|++... .+|++++.|+.+.|||+++.    ..++.....+|++.|+|++|+|.+     ..+||||
T Consensus       223 ~~~h~~~V-eDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~----~~~~~~~~~ah~~~vn~~~fnp~~-----~~ilAT~  291 (422)
T KOG0264|consen  223 FSGHEDVV-EDVAWHPLHE-DLFGSVGDDGKLMIWDTRSN----TSKPSHSVKAHSAEVNCVAFNPFN-----EFILATG  291 (422)
T ss_pred             eecCCcce-ehhhccccch-hhheeecCCCeEEEEEcCCC----CCCCcccccccCCceeEEEeCCCC-----CceEEec
Confidence            38999999 9999998754 69999999999999999963    237778888999999999999997     4899999


Q ss_pred             cCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEccccccCCC-CCCCCccCccccceEE
Q 008363          254 GHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPG-CVILSFDDGAMRIVSLLKAAYDVP-ATGKPFAGTKQQGLHL  330 (568)
Q Consensus       254 s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~-~l~s~~~dg~I~lwd~~~~~~~~~-~~g~~~~~~~~~~l~~  330 (568)
                      |.|+ |.|||+|+...++..+.+|...|..|.|+|+.. .|++++.|+.+.+||+.......+ ..++   ......+..
T Consensus       292 S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~---dgppEllF~  368 (422)
T KOG0264|consen  292 SADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE---DGPPELLFI  368 (422)
T ss_pred             cCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc---cCCcceeEE
Confidence            9998 999999999899999999999999999999765 556678899999999976543211 0000   011244678


Q ss_pred             EecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcC
Q 008363          331 VNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       331 ~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~  365 (568)
                      ..||...|..+.|+|+. ..|++++.|+.+.||+..
T Consensus       369 HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  369 HGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            88999999999999996 678899999999999985

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=7.8e-25  Score=225.75  Aligned_cols=236  Identities=13%  Similarity=0.231  Sum_probs=200.1

Q ss_pred             EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCC
Q 008363           93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTD  158 (568)
Q Consensus        93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~  158 (568)
                      ..+..|+| .|+.|+|+|.+          -++++|++|-.|+||+..+.+|+.++.+|-.              ++.++
T Consensus        45 ~rFdeHdG-pVRgv~FH~~q----------plFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASD  113 (1202)
T KOG0292|consen   45 DRFDEHDG-PVRGVDFHPTQ----------PLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASD  113 (1202)
T ss_pred             hhhhccCC-ccceeeecCCC----------CeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccC
Confidence            34678999 77799999999          4999999999999999999999998888876              78999


Q ss_pred             CceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCC---C-----------------
Q 008363          159 PRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDS---S-----------------  216 (568)
Q Consensus       159 ~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~---~-----------------  216 (568)
                      |++|++|...+  |...+.||...| +|.+|+  |..++++++|-|.+|+|||+..-..   .                 
T Consensus       114 DQTIrIWNwqsr~~iavltGHnHYV-McAqFh--ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dL  190 (1202)
T KOG0292|consen  114 DQTIRIWNWQSRKCIAVLTGHNHYV-MCAQFH--PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDL  190 (1202)
T ss_pred             CCeEEEEeccCCceEEEEecCceEE-EeeccC--CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhh
Confidence            99999999876  888999999999 999999  6667999999999999999863211   0                 


Q ss_pred             ---CCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCE
Q 008363          217 ---IDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGC  291 (568)
Q Consensus       217 ---~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~  291 (568)
                         .+.-....+.||...|+-++|+|.-      .+|+||++|. |++|.+.... ..+.+..+|...|.++-|+|....
T Consensus       191 fg~~DaVVK~VLEGHDRGVNwaAfhpTl------pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~l  264 (1202)
T KOG0292|consen  191 FGQTDAVVKHVLEGHDRGVNWAAFHPTL------PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDL  264 (1202)
T ss_pred             cCCcCeeeeeeecccccccceEEecCCc------ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccce
Confidence               0122335778999999999999998      7999999999 9999987542 345677899999999999999999


Q ss_pred             EEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          292 VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       292 l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      |++.|.|++|++||+.+                ..+++++......-|.++.+|..++++.| .|+-+.+|.++
T Consensus       265 IlSnsEDksirVwDm~k----------------Rt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkle  321 (1202)
T KOG0292|consen  265 ILSNSEDKSIRVWDMTK----------------RTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLE  321 (1202)
T ss_pred             eEecCCCccEEEEeccc----------------ccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEc
Confidence            99999999999999954                14567888778899999999998866655 57777788774

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.93  E-value=1.2e-24  Score=199.97  Aligned_cols=227  Identities=13%  Similarity=0.175  Sum_probs=193.8

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC---------------ccCCCC
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM---------------KEGTDP  159 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~---------------~~~~~~  159 (568)
                      ..+|.+.+. .+.|++++          +.|++++.|.+|+.||+++|++.+.+.+|..               .++++|
T Consensus        86 lkgHsgAVM-~l~~~~d~----------s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD  154 (338)
T KOG0265|consen   86 LKGHSGAVM-ELHGMRDG----------SHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDD  154 (338)
T ss_pred             eccccceeE-eeeeccCC----------CEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCC
Confidence            359999555 99999999          8999999999999999999999999988876               578999


Q ss_pred             ceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEE
Q 008363          160 RFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSW  237 (568)
Q Consensus       160 ~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~  237 (568)
                      +.+++|++..  +.+++ ...-.+ +++.|.  ..++.+.+|+-|+.|++||++..      ..+.++.||...|+.|..
T Consensus       155 ~t~kl~D~R~k~~~~t~-~~kyql-tAv~f~--d~s~qv~sggIdn~ikvWd~r~~------d~~~~lsGh~DtIt~lsl  224 (338)
T KOG0265|consen  155 GTLKLWDIRKKEAIKTF-ENKYQL-TAVGFK--DTSDQVISGGIDNDIKVWDLRKN------DGLYTLSGHADTITGLSL  224 (338)
T ss_pred             ceEEEEeecccchhhcc-ccceeE-EEEEec--ccccceeeccccCceeeeccccC------cceEEeecccCceeeEEe
Confidence            9999999985  32222 234456 899999  77889999999999999999876      788999999999999999


Q ss_pred             ccCCCCCCCCcEEEEEcCCC-EEEEECCCC---CcceeeeCCCCCC----eEEEEEcCCCCEEEEEeCCCcEEEEEcccc
Q 008363          238 APAESDSDSANVILTAGHGG-LKFWDIRDP---FRPLWDIHPAPKF----IYGLDWLPDPGCVILSFDDGAMRIVSLLKA  309 (568)
Q Consensus       238 ~p~~~~~~~~~~las~s~d~-v~lwD~~~~---~~~~~~~~~h~~~----i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~  309 (568)
                      ++.|      .++.+-+-|. +++||++-.   .+++..+.+|...    ...++|+|+++.+-+|+.|..+++||... 
T Consensus       225 s~~g------s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~-  297 (338)
T KOG0265|consen  225 SRYG------SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS-  297 (338)
T ss_pred             ccCC------CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc-
Confidence            9999      8999999998 999999843   2556677665432    35789999999999999999999999832 


Q ss_pred             ccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          310 AYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       310 ~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                              +       ..+..+.||.+.|.+++|+|...+|.+++.|.+|++=++
T Consensus       298 --------r-------~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei  337 (338)
T KOG0265|consen  298 --------R-------RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI  337 (338)
T ss_pred             --------c-------cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence                    1       335688999999999999999999999999999987443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.4e-23  Score=216.55  Aligned_cols=265  Identities=18%  Similarity=0.214  Sum_probs=199.8

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC-ceeeEEeccCC------------ccCCCCce
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL-RTMKAIYLSSM------------KEGTDPRF  161 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~-~~~~~l~~~~~------------~~~~~~~~  161 (568)
                      ..+|++|.. .|+|.|+|          .+|++++.||.|++|+.... +.-.++..+..            +.++.+..
T Consensus         9 Ryaht~G~t-~i~~d~~g----------efi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~t   77 (933)
T KOG1274|consen    9 RYAHTGGLT-LICYDPDG----------EFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNT   77 (933)
T ss_pred             hhhccCceE-EEEEcCCC----------CEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccce
Confidence            468998877 99999999          79999999999999987653 22222210111            55667777


Q ss_pred             EEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEcc
Q 008363          162 VKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAP  239 (568)
Q Consensus       162 v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p  239 (568)
                      +..++.-.  ....+...+.++ .+++++  .+|.++|.|+.|-.|++.++...      .....+.+|.++|.+|.|+|
T Consensus        78 v~~y~fps~~~~~iL~Rftlp~-r~~~v~--g~g~~iaagsdD~~vK~~~~~D~------s~~~~lrgh~apVl~l~~~p  148 (933)
T KOG1274|consen   78 VLRYKFPSGEEDTILARFTLPI-RDLAVS--GSGKMIAAGSDDTAVKLLNLDDS------SQEKVLRGHDAPVLQLSYDP  148 (933)
T ss_pred             EEEeeCCCCCccceeeeeeccc-eEEEEe--cCCcEEEeecCceeEEEEecccc------chheeecccCCceeeeeEcC
Confidence            77666544  233445566777 889988  88999999999999999999866      77888999999999999999


Q ss_pred             CCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCC-------C-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccc
Q 008363          240 AESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHP-------A-PKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAA  310 (568)
Q Consensus       240 ~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~-------h-~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~  310 (568)
                      .+      ++||+.+.|| |++||+.++ ....++.+       - ...+..++|+|++..++..+.|+.|.+|+.....
T Consensus       149 ~~------~fLAvss~dG~v~iw~~~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we  221 (933)
T KOG1274|consen  149 KG------NFLAVSSCDGKVQIWDLQDG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE  221 (933)
T ss_pred             CC------CEEEEEecCceEEEEEcccc-hhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce
Confidence            99      9999999999 999999977 44333321       1 3456789999999999999999999999985422


Q ss_pred             cCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCC
Q 008363          311 YDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDE  390 (568)
Q Consensus       311 ~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~  390 (568)
                              ..      .......|...+..++|+|+|.|||+++.||.|.|||.++..  +   ......+.|-++.+.+
T Consensus       222 --------~~------f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~--~---~~~~~~Vc~~aw~p~~  282 (933)
T KOG1274|consen  222 --------LQ------FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE--R---HEFKRAVCCEAWKPNA  282 (933)
T ss_pred             --------eh------eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch--h---ccccceeEEEecCCCC
Confidence                    21      001223344559999999999999999999999999998721  1   2233445566888999


Q ss_pred             CceEEcccCCCCCcc
Q 008363          391 SAITVNTPLDNTPVP  405 (568)
Q Consensus       391 ~~i~~~~~~~~~~~~  405 (568)
                      +.|.+....+..++.
T Consensus       283 n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  283 NAITLITALGTLGVS  297 (933)
T ss_pred             CeeEEEeeccccccC
Confidence            988886665555443

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=4.6e-24  Score=215.75  Aligned_cols=227  Identities=18%  Similarity=0.330  Sum_probs=192.7

Q ss_pred             ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEec-cCC------------ccCCCCceEE
Q 008363           97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYL-SSM------------KEGTDPRFVK  163 (568)
Q Consensus        97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~-~~~------------~~~~~~~~v~  163 (568)
                      .+.. -+.++.|+++|          .+||+|..+|.|.|||..+.+.+..+.+ |..            .+|+.++.+.
T Consensus       215 ~~~~-~vtSv~ws~~G----------~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~  283 (484)
T KOG0305|consen  215 FGEE-LVTSVKWSPDG----------SHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKIL  283 (484)
T ss_pred             cCCC-ceEEEEECCCC----------CEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEE
Confidence            3344 55699999999          8999999999999999999888888777 443            5678888888


Q ss_pred             Eeecce---ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC
Q 008363          164 LEPVFR---CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA  240 (568)
Q Consensus       164 ~~~~~~---~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~  240 (568)
                      .+++..   ......+|...| ..+.|+  +++.+||+|+.|+.+.|||....      .+...+..|.+.|.+++|+|.
T Consensus       284 ~~dvR~~~~~~~~~~~H~qeV-CgLkws--~d~~~lASGgnDN~~~Iwd~~~~------~p~~~~~~H~aAVKA~awcP~  354 (484)
T KOG0305|consen  284 NHDVRISQHVVSTLQGHRQEV-CGLKWS--PDGNQLASGGNDNVVFIWDGLSP------EPKFTFTEHTAAVKALAWCPW  354 (484)
T ss_pred             EEEEecchhhhhhhhccccee-eeeEEC--CCCCeeccCCCccceEeccCCCc------cccEEEeccceeeeEeeeCCC
Confidence            888766   223477999999 999999  99999999999999999999655      788899999999999999999


Q ss_pred             CCCCCCCcEEEEEcC--CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEE--eCCCcEEEEEccccccCCCC
Q 008363          241 ESDSDSANVILTAGH--GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS--FDDGAMRIVSLLKAAYDVPA  315 (568)
Q Consensus       241 ~~~~~~~~~las~s~--d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~--~~dg~I~lwd~~~~~~~~~~  315 (568)
                      .     ..+||+|+.  |+ |++||+.++ ..+..+. -...|.+|.|++..+-|+++  ..++.|.||+...+      
T Consensus       355 q-----~~lLAsGGGs~D~~i~fwn~~~g-~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~------  421 (484)
T KOG0305|consen  355 Q-----SGLLATGGGSADRCIKFWNTNTG-ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM------  421 (484)
T ss_pred             c-----cCceEEcCCCcccEEEEEEcCCC-cEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc------
Confidence            7     489999865  67 999999987 5565553 35679999999999888876  33889999999432      


Q ss_pred             CCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          316 TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                                ..+..+.+|...|..++++|+|..|++|+.|.++++|++-.
T Consensus       422 ----------~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  422 ----------KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             ----------ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence                      34568999999999999999999999999999999999954

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=1.3e-24  Score=205.20  Aligned_cols=236  Identities=20%  Similarity=0.359  Sum_probs=183.0

Q ss_pred             cceEEE-eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeec
Q 008363           89 LPRVVL-CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPV  167 (568)
Q Consensus        89 ~p~~~~-~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~  167 (568)
                      .|.+.. .+.|.+. +..++-++.+..        .+.|+-+..|.|+||++..  .++.+...    +.........|+
T Consensus       140 ~P~~~~~~i~h~g~-~NRvr~~~~~~~--------~~~aswse~G~V~Vw~l~~--~l~~l~~~----~~~~~~s~~~Pl  204 (440)
T KOG0302|consen  140 KPQIEMKSIPHYGG-INRVRVSRLGNE--------VLCASWSENGRVQVWDLAP--HLNALSEP----GLEVKDSEFRPL  204 (440)
T ss_pred             cccccccccccccc-cceeeecccCCc--------ceeeeecccCcEEEEEchh--hhhhhcCc----cccccccccCce
Confidence            455543 4678884 448887776522        6888889999999999976  22221111    111111233444


Q ss_pred             ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363          168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA  247 (568)
Q Consensus       168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~  247 (568)
                      +++    .+|... ++.|+|+|...| .|++|..-+.|++|...++.+..+..   .|.+|+..|-.|+|+|...     
T Consensus       205 ~t~----~ghk~E-Gy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~vd~~---Pf~gH~~SVEDLqWSptE~-----  270 (440)
T KOG0302|consen  205 FTF----NGHKGE-GYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSWKVDQR---PFTGHTKSVEDLQWSPTED-----  270 (440)
T ss_pred             EEe----cccCcc-ceeeeccccccc-ccccCccccceEeeeeccCceeecCc---cccccccchhhhccCCccC-----
Confidence            444    788877 599999986665 78999989999999999886643333   4557999999999999873     


Q ss_pred             cEEEEEcCCC-EEEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccc
Q 008363          248 NVILTAGHGG-LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQ  325 (568)
Q Consensus       248 ~~las~s~d~-v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~  325 (568)
                      .+|||||.|+ |+|||+|... .+......|.+.|+.|.|+..-.+|++|++||+++|||+|.+.     .|        
T Consensus       271 ~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~-----~~--------  337 (440)
T KOG0302|consen  271 GVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK-----SG--------  337 (440)
T ss_pred             ceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc-----CC--------
Confidence            8999999999 9999999873 3444457999999999999998899999999999999999877     34        


Q ss_pred             cceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCC
Q 008363          326 QGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       326 ~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~  366 (568)
                      +++..|+.|..+|++|.|+|.. ..|+++|.|..|.|||+..
T Consensus       338 ~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  338 QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            4457999999999999999985 8899999999999999953

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.5e-24  Score=208.72  Aligned_cols=233  Identities=15%  Similarity=0.219  Sum_probs=188.6

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      .++++.|..||          .+||+|...|.|+|||+.+...++.+                          .+|+.++
T Consensus        70 ~v~s~~fR~DG----------~LlaaGD~sG~V~vfD~k~r~iLR~~--------------------------~ah~apv  113 (487)
T KOG0310|consen   70 VVYSVDFRSDG----------RLLAAGDESGHVKVFDMKSRVILRQL--------------------------YAHQAPV  113 (487)
T ss_pred             ceeEEEeecCC----------eEEEccCCcCcEEEeccccHHHHHHH--------------------------hhccCce
Confidence            67799999999          89999999999999997664444444                          7899998


Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF  260 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l  260 (568)
                       ..+.|+|. ++..|++|+.|+.+++||+.+.      .....+.+|+..|+|.+|+|..     +.+++|||+|+ |++
T Consensus       114 -~~~~f~~~-d~t~l~s~sDd~v~k~~d~s~a------~v~~~l~~htDYVR~g~~~~~~-----~hivvtGsYDg~vrl  180 (487)
T KOG0310|consen  114 -HVTKFSPQ-DNTMLVSGSDDKVVKYWDLSTA------YVQAELSGHTDYVRCGDISPAN-----DHIVVTGSYDGKVRL  180 (487)
T ss_pred             -eEEEeccc-CCeEEEecCCCceEEEEEcCCc------EEEEEecCCcceeEeeccccCC-----CeEEEecCCCceEEE
Confidence             99999865 4568899999999999999977      4556889999999999999986     47999999999 999


Q ss_pred             EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE
Q 008363          261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS  340 (568)
Q Consensus       261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~  340 (568)
                      ||+|.....+..+ .|..+|.++.+.|.|..|++++. ..|++||+-.        |..+       +..+..|...|+|
T Consensus       181 ~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~--------G~ql-------l~~~~~H~KtVTc  243 (487)
T KOG0310|consen  181 WDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTT--------GGQL-------LTSMFNHNKTVTC  243 (487)
T ss_pred             EEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecC--------Ccee-------hhhhhcccceEEE
Confidence            9999875555566 78999999999999998888764 5799999932        3322       2344559999999


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccCCCC
Q 008363          341 VQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNT  402 (568)
Q Consensus       341 l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~  402 (568)
                      +++..++..|++++.|+.|++||+.+-++... -..+.|.+ ..++++++..+.+|-..+.+
T Consensus       244 L~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s-~~~~~pvL-siavs~dd~t~viGmsnGlv  303 (487)
T KOG0310|consen  244 LRLASDSTRLLSGSLDRHVKVFDTTNYKVVHS-WKYPGPVL-SIAVSPDDQTVVIGMSNGLV  303 (487)
T ss_pred             EEeecCCceEeecccccceEEEEccceEEEEe-eeccccee-eEEecCCCceEEEeccccee
Confidence            99999999999999999999999877666543 22333333 34678888898887554444

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.93  E-value=4.3e-23  Score=202.44  Aligned_cols=255  Identities=18%  Similarity=0.218  Sum_probs=193.9

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC-ceee----EEeccCC-------------
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL-RTMK----AIYLSSM-------------  153 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~-~~~~----~l~~~~~-------------  153 (568)
                      ...+..|.. .+.-.+|+|.|          -++|+|...|.|||||.... ..++    .|.++-.             
T Consensus        52 ~~iYtEH~~-~vtVAkySPsG----------~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~a  120 (603)
T KOG0318|consen   52 VDIYTEHAH-QVTVAKYSPSG----------FYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAA  120 (603)
T ss_pred             eeeeccccc-eeEEEEeCCCc----------eEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEE
Confidence            455678877 44489999999          79999999999999998773 2222    2222111             


Q ss_pred             ccCCCCce--EEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCC
Q 008363          154 KEGTDPRF--VKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLP  231 (568)
Q Consensus       154 ~~~~~~~~--v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~  231 (568)
                      +.....++  +-+|+.-.....+.||...| .+++|-|+.. -++++|+.|++|.+|+=..      .+...++..|+.-
T Consensus       121 vGEGrerfg~~F~~DSG~SvGei~GhSr~i-ns~~~KpsRP-fRi~T~sdDn~v~ffeGPP------FKFk~s~r~HskF  192 (603)
T KOG0318|consen  121 VGEGRERFGHVFLWDSGNSVGEITGHSRRI-NSVDFKPSRP-FRIATGSDDNTVAFFEGPP------FKFKSSFREHSKF  192 (603)
T ss_pred             EecCccceeEEEEecCCCccceeeccceeE-eeeeccCCCc-eEEEeccCCCeEEEeeCCC------eeeeecccccccc
Confidence            11112222  33556555666778999999 9999997755 4899999999999998432      2555678889999


Q ss_pred             eeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeC---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 008363          232 IRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIH---PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLL  307 (568)
Q Consensus       232 V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~---~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~  307 (568)
                      |+++.|+|+|      .+|||++.|+ |.+||-.++ ..+..+.   +|.+.|++|+|+||+..+++++.|.+++|||+.
T Consensus       193 V~~VRysPDG------~~Fat~gsDgki~iyDGktg-e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs  265 (603)
T KOG0318|consen  193 VNCVRYSPDG------SRFATAGSDGKIYIYDGKTG-EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVS  265 (603)
T ss_pred             eeeEEECCCC------CeEEEecCCccEEEEcCCCc-cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEee
Confidence            9999999999      8999999999 999999988 6676776   899999999999999999999999999999985


Q ss_pred             ccccC----CCCC--CCCc---c------------------CccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 008363          308 KAAYD----VPAT--GKPF---A------------------GTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVH  360 (568)
Q Consensus       308 ~~~~~----~~~~--g~~~---~------------------~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~  360 (568)
                      ..+-.    ...+  .+++   +                  -.....+.++.||...|+++..+|++.+|++|+.||.|.
T Consensus       266 ~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~  345 (603)
T KOG0318|consen  266 TNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHIN  345 (603)
T ss_pred             ccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEE
Confidence            43210    0000  0000   0                  001124567889999999999999999999999999999


Q ss_pred             EEEcCCCeeecc
Q 008363          361 RFQLTAKAVEKD  372 (568)
Q Consensus       361 iwd~~~~~~~~~  372 (568)
                      -|+..++...+.
T Consensus       346 ~W~~~~g~~~~~  357 (603)
T KOG0318|consen  346 SWDSGSGTSDRL  357 (603)
T ss_pred             EEecCCcccccc
Confidence            999988766543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.1e-22  Score=188.94  Aligned_cols=246  Identities=15%  Similarity=0.149  Sum_probs=189.7

Q ss_pred             CceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC----------------ccCCCCceEE
Q 008363          100 GKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM----------------KEGTDPRFVK  163 (568)
Q Consensus       100 ~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~----------------~~~~~~~~v~  163 (568)
                      .+.+.++.|+++|          .+|++++.|.+|+|||..++..++++.....                .+...+..|+
T Consensus        14 ~~~i~sl~fs~~G----------~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr   83 (311)
T KOG1446|consen   14 NGKINSLDFSDDG----------LLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR   83 (311)
T ss_pred             CCceeEEEecCCC----------CEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence            3356699999999          7999999999999999999999888865533                2334567777


Q ss_pred             Eeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCC
Q 008363          164 LEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAE  241 (568)
Q Consensus       164 ~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~  241 (568)
                      +-.+..  +++.+.||...| .+|+-+  |-++.+++++.|++|++||++..      ++...+....  -..++|.|.|
T Consensus        84 yLsl~dNkylRYF~GH~~~V-~sL~~s--P~~d~FlS~S~D~tvrLWDlR~~------~cqg~l~~~~--~pi~AfDp~G  152 (311)
T KOG1446|consen   84 YLSLHDNKYLRYFPGHKKRV-NSLSVS--PKDDTFLSSSLDKTVRLWDLRVK------KCQGLLNLSG--RPIAAFDPEG  152 (311)
T ss_pred             EEEeecCceEEEcCCCCceE-EEEEec--CCCCeEEecccCCeEEeeEecCC------CCceEEecCC--CcceeECCCC
Confidence            777766  778889999999 999988  77789999999999999999966      5655553323  3457899999


Q ss_pred             CCCCCCcEEEEEcCCC-EEEEECCCC-CcceeeeC---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCC
Q 008363          242 SDSDSANVILTAGHGG-LKFWDIRDP-FRPLWDIH---PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPAT  316 (568)
Q Consensus       242 ~~~~~~~~las~s~d~-v~lwD~~~~-~~~~~~~~---~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~  316 (568)
                            -+||.+.... |+|||+|.- ..|..++.   +-....+.|.|+|||++|+.++..+.+++.|.        -+
T Consensus       153 ------LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDA--------f~  218 (311)
T KOG1446|consen  153 ------LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDA--------FD  218 (311)
T ss_pred             ------cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEc--------cC
Confidence                  7888888876 999999975 34554443   23556789999999999999999999999998        34


Q ss_pred             CCCccCccccceEEEecCCCCE---EEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccC
Q 008363          317 GKPFAGTKQQGLHLVNCSSFAI---WSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTE  388 (568)
Q Consensus       317 g~~~~~~~~~~l~~~~~h~~~V---~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~  388 (568)
                      |...        .++.++...-   ...+|+|+++++++|+.||+|.+|+++++...............|..+.+
T Consensus       219 G~~~--------~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP  285 (311)
T KOG1446|consen  219 GTVK--------STFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP  285 (311)
T ss_pred             CcEe--------eeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC
Confidence            6543        5666655332   57789999999999999999999999887655433332333334443333

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.92  E-value=6.1e-24  Score=222.78  Aligned_cols=229  Identities=18%  Similarity=0.275  Sum_probs=201.0

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------ccCCCCceE
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------KEGTDPRFV  162 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------~~~~~~~~v  162 (568)
                      +.+|.+ .||++++..-+          .+|++|+.|.+++|||+.+++|...+.+|..            .+|+.|..+
T Consensus       245 l~GH~g-~V~~l~~~~~~----------~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tV  313 (537)
T KOG0274|consen  245 LVGHFG-GVWGLAFPSGG----------DKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTV  313 (537)
T ss_pred             ccCCCC-CceeEEEecCC----------CEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceE
Confidence            789999 77799998745          7999999999999999999999999999887            678899999


Q ss_pred             EEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC
Q 008363          163 KLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA  240 (568)
Q Consensus       163 ~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~  240 (568)
                      ++|.+..  ++.+..+|...| .++..+    +.++++|+.||+|++||+.+.      +++..+.+|+..|+++.+...
T Consensus       314 kVW~v~n~~~l~l~~~h~~~V-~~v~~~----~~~lvsgs~d~~v~VW~~~~~------~cl~sl~gH~~~V~sl~~~~~  382 (537)
T KOG0274|consen  314 KVWDVTNGACLNLLRGHTGPV-NCVQLD----EPLLVSGSYDGTVKVWDPRTG------KCLKSLSGHTGRVYSLIVDSE  382 (537)
T ss_pred             EEEeccCcceEEEeccccccE-EEEEec----CCEEEEEecCceEEEEEhhhc------eeeeeecCCcceEEEEEecCc
Confidence            9999986  777888899999 999965    679999999999999999976      999999999999999988775


Q ss_pred             CCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCC
Q 008363          241 ESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKP  319 (568)
Q Consensus       241 ~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~  319 (568)
                             ..+++|+.|+ |++||+++..+++.++.+|...+..+.+.  +++|++++.|++|++||..        ++  
T Consensus       383 -------~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~~~Lvs~~aD~~Ik~WD~~--------~~--  443 (537)
T KOG0274|consen  383 -------NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--DNFLVSSSADGTIKLWDAE--------EG--  443 (537)
T ss_pred             -------ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc--cceeEeccccccEEEeecc--------cC--
Confidence                   3899999999 99999998767889999999988777655  7899999999999999993        35  


Q ss_pred             ccCccccceEEEec-CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          320 FAGTKQQGLHLVNC-SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       320 ~~~~~~~~l~~~~~-h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                            ++++.+.+ |.+.|+.+++.  ...+++++.||++++||+.++...+.
T Consensus       444 ------~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~  489 (537)
T KOG0274|consen  444 ------ECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRT  489 (537)
T ss_pred             ------ceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhh
Confidence                  34578887 67899988885  46799999999999999987765554

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.92  E-value=1.7e-24  Score=202.84  Aligned_cols=196  Identities=17%  Similarity=0.265  Sum_probs=167.6

Q ss_pred             ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcE
Q 008363          170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV  249 (568)
Q Consensus       170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~  249 (568)
                      ......+|.+.| .||++.  |...+|++|+.|++|+|||+.++      ++..++.+|-..|..+++++..      .|
T Consensus       143 l~rVi~gHlgWV-r~vavd--P~n~wf~tgs~DrtikIwDlatg------~LkltltGhi~~vr~vavS~rH------pY  207 (460)
T KOG0285|consen  143 LYRVISGHLGWV-RSVAVD--PGNEWFATGSADRTIKIWDLATG------QLKLTLTGHIETVRGVAVSKRH------PY  207 (460)
T ss_pred             ehhhhhhccceE-EEEeeC--CCceeEEecCCCceeEEEEcccC------eEEEeecchhheeeeeeecccC------ce
Confidence            344558999999 999988  66789999999999999999988      8888999999999999999998      79


Q ss_pred             EEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363          250 ILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       250 las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                      +.+++.|+ |+.||+... +.++.+++|-..|++++.+|.-..|++|+.|.++++||+|.        .        ..+
T Consensus       208 lFs~gedk~VKCwDLe~n-kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt--------r--------~~V  270 (460)
T KOG0285|consen  208 LFSAGEDKQVKCWDLEYN-KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT--------R--------ASV  270 (460)
T ss_pred             EEEecCCCeeEEEechhh-hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc--------c--------ceE
Confidence            99999999 999999987 88899999999999999999999999999999999999975        2        346


Q ss_pred             EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEccc
Q 008363          329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTP  398 (568)
Q Consensus       329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~  398 (568)
                      +.+.||..+|.++.+.|....+++||.|++|++||+..++....... -.....|.++.++...+++.++
T Consensus       271 ~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~-hkksvral~lhP~e~~fASas~  339 (460)
T KOG0285|consen  271 HVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTH-HKKSVRALCLHPKENLFASASP  339 (460)
T ss_pred             EEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeec-ccceeeEEecCCchhhhhccCC
Confidence            79999999999999999999999999999999999987765543222 2223344455666666665544

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.92  E-value=2.7e-23  Score=195.65  Aligned_cols=252  Identities=14%  Similarity=0.211  Sum_probs=198.9

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeeccee
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRC  170 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~  170 (568)
                      .++.+..|.+ .+++++.+|+.          +++|+|+.|..-.||++.++.....+                      
T Consensus        56 S~~tF~~H~~-svFavsl~P~~----------~l~aTGGgDD~AflW~~~~ge~~~el----------------------  102 (399)
T KOG0296|consen   56 SLVTFDKHTD-SVFAVSLHPNN----------NLVATGGGDDLAFLWDISTGEFAGEL----------------------  102 (399)
T ss_pred             ceeehhhcCC-ceEEEEeCCCC----------ceEEecCCCceEEEEEccCCcceeEe----------------------
Confidence            5677889999 55699999977          79999999999999999998877666                      


Q ss_pred             cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363          171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI  250 (568)
Q Consensus       171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l  250 (568)
                          .+|..+| +++.|+  .+|.+||+|..+|.|+||...++      .....+...-..|--+.|+|.+      .+|
T Consensus       103 ----tgHKDSV-t~~~Fs--hdgtlLATGdmsG~v~v~~~stg------~~~~~~~~e~~dieWl~WHp~a------~il  163 (399)
T KOG0296|consen  103 ----TGHKDSV-TCCSFS--HDGTLLATGDMSGKVLVFKVSTG------GEQWKLDQEVEDIEWLKWHPRA------HIL  163 (399)
T ss_pred             ----cCCCCce-EEEEEc--cCceEEEecCCCccEEEEEcccC------ceEEEeecccCceEEEEecccc------cEE
Confidence                8999999 999999  89999999999999999999987      5555554455668889999998      899


Q ss_pred             EEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccC--C------CC------
Q 008363          251 LTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYD--V------PA------  315 (568)
Q Consensus       251 as~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~--~------~~------  315 (568)
                      +.|+.|| |.+|.+.+. .....+.+|..++++=.|.|+|+.++++..||+|++|++..-..-  .      +.      
T Consensus       164 lAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~  242 (399)
T KOG0296|consen  164 LAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLN  242 (399)
T ss_pred             EeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccc
Confidence            9999999 999999986 667788999999999999999999999999999999997432100  0      00      


Q ss_pred             ---------------------CCCCcc--------------------------------------------CccccceEE
Q 008363          316 ---------------------TGKPFA--------------------------------------------GTKQQGLHL  330 (568)
Q Consensus       316 ---------------------~g~~~~--------------------------------------------~~~~~~l~~  330 (568)
                                           +|+.+.                                            ......++.
T Consensus       243 ~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~  322 (399)
T KOG0296|consen  243 LAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRH  322 (399)
T ss_pred             cccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhe
Confidence                                 000000                                            000011222


Q ss_pred             EecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363          331 VNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNT  397 (568)
Q Consensus       331 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~  397 (568)
                      .-.|..+|+.+.|-+ ..+|++++.||.|++||.+++.+...+..+.. ++++.+++++.+.+...+
T Consensus       323 ~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~-~Il~f~ls~~~~~vvT~s  387 (399)
T KOG0296|consen  323 ICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQM-GILDFALSPQKRLVVTVS  387 (399)
T ss_pred             eccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCch-heeEEEEcCCCcEEEEec
Confidence            335777888999988 78899999999999999999988887666543 456667777766655443

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.92  E-value=7.6e-25  Score=202.54  Aligned_cols=231  Identities=17%  Similarity=0.257  Sum_probs=193.7

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT  184 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~  184 (568)
                      |..|+|++          ++|++|+.||-|.||++.+|+..+.+.-.            ..+      .+.-+...| .|
T Consensus       218 cA~FSPDg----------qyLvsgSvDGFiEVWny~~GKlrKDLkYQ------------Aqd------~fMMmd~aV-lc  268 (508)
T KOG0275|consen  218 CARFSPDG----------QYLVSGSVDGFIEVWNYTTGKLRKDLKYQ------------AQD------NFMMMDDAV-LC  268 (508)
T ss_pred             heeeCCCC----------ceEeeccccceeeeehhccchhhhhhhhh------------hhc------ceeecccce-EE
Confidence            88999999          89999999999999999998766554211            001      115577888 99


Q ss_pred             EEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee-CCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEE
Q 008363          185 MEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS-ADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWD  262 (568)
Q Consensus       185 v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD  262 (568)
                      +.|+  .|..+||+|+.||.|++|.+.++      .|++.|. +|+..|+++.|+.++      ..+.+++.|. +++.-
T Consensus       269 i~FS--RDsEMlAsGsqDGkIKvWri~tG------~ClRrFdrAHtkGvt~l~FSrD~------SqiLS~sfD~tvRiHG  334 (508)
T KOG0275|consen  269 ISFS--RDSEMLASGSQDGKIKVWRIETG------QCLRRFDRAHTKGVTCLSFSRDN------SQILSASFDQTVRIHG  334 (508)
T ss_pred             Eeec--ccHHHhhccCcCCcEEEEEEecc------hHHHHhhhhhccCeeEEEEccCc------chhhcccccceEEEec
Confidence            9999  89999999999999999999988      8999886 899999999999999      7899999998 99999


Q ss_pred             CCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe--cCCCCEEE
Q 008363          263 IRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN--CSSFAIWS  340 (568)
Q Consensus       263 ~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~--~h~~~V~~  340 (568)
                      +.++ +++..+.+|...|+...|.+||.++++++.||+|++|+..        ++++        +.+|+  +...+|.+
T Consensus       335 lKSG-K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~K--------tteC--------~~Tfk~~~~d~~vns  397 (508)
T KOG0275|consen  335 LKSG-KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGK--------TTEC--------LSTFKPLGTDYPVNS  397 (508)
T ss_pred             cccc-hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCc--------chhh--------hhhccCCCCccccee
Confidence            9988 9999999999999999999999999999999999999994        4544        45555  34568888


Q ss_pred             EEEecCC-CEEEEEeCCCeEEEEEcCCCeeeccCCCC-CcceeeeecccCCCCceEE
Q 008363          341 VQVSRLT-GMVAYCSADGTVHRFQLTAKAVEKDHSRN-RPMHFLCGSVTEDESAITV  395 (568)
Q Consensus       341 l~~sp~~-~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~i~~  395 (568)
                      +..-|.. ..++.|....+|+|.++....+....+.. ....|.+..+++.|+-+..
T Consensus       398 v~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYc  454 (508)
T KOG0275|consen  398 VILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYC  454 (508)
T ss_pred             EEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEE
Confidence            8888875 78999999999999999876655543433 3457888889998887654

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.92  E-value=3.7e-23  Score=185.28  Aligned_cols=218  Identities=16%  Similarity=0.262  Sum_probs=181.6

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-------------ccCC
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-------------KEGT  157 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-------------~~~~  157 (568)
                      .+..+.+|+..+. +|.|.-+|          +++++|+.||+++|||+....+.+.+.....             +++.
T Consensus        75 Pv~t~e~h~kNVt-aVgF~~dg----------rWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~d  143 (311)
T KOG0315|consen   75 PVATFEGHTKNVT-AVGFQCDG----------RWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGD  143 (311)
T ss_pred             ceeEEeccCCceE-EEEEeecC----------eEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeec
Confidence            3556789988555 99999999          8999999999999999999777666544322             6788


Q ss_pred             CCceEEEeecce--eccccc-CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeE
Q 008363          158 DPRFVKLEPVFR--CSMLKC-GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRA  234 (568)
Q Consensus       158 ~~~~v~~~~~~~--~~~~~~-~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~  234 (568)
                      .++.|++|++..  |...+. .....| .++...  ++|.+++.+..-|...+|++-.........++..|++|++.+..
T Consensus       144 qsg~irvWDl~~~~c~~~liPe~~~~i-~sl~v~--~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~  220 (311)
T KOG0315|consen  144 QSGNIRVWDLGENSCTHELIPEDDTSI-QSLTVM--PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILR  220 (311)
T ss_pred             CCCcEEEEEccCCccccccCCCCCcce-eeEEEc--CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEE
Confidence            999999999876  333222 233556 778866  89999999999999999999876665667888999999999999


Q ss_pred             EEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCC
Q 008363          235 VSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDV  313 (568)
Q Consensus       235 v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~  313 (568)
                      +.++|++      ++||++|.|. ++||++.+-.+....+.+|...+..++||.||+||++++.|+.+++||+..     
T Consensus       221 C~lSPd~------k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~-----  289 (311)
T KOG0315|consen  221 CLLSPDV------KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSA-----  289 (311)
T ss_pred             EEECCCC------cEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccccc-----
Confidence            9999999      9999999998 999999977555577889999999999999999999999999999999954     


Q ss_pred             CCCCCCccCccccceEEEecCCCCEEEEEEe
Q 008363          314 PATGKPFAGTKQQGLHLVNCSSFAIWSVQVS  344 (568)
Q Consensus       314 ~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~s  344 (568)
                         |+.        ++.+.+|..+..|++..
T Consensus       290 ---~k~--------v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  290 ---GKE--------VRQYQGHHKAAVCVALN  309 (311)
T ss_pred             ---Cce--------eeecCCcccccEEEEee
Confidence               544        36888988877776653

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.92  E-value=7.7e-24  Score=200.18  Aligned_cols=226  Identities=14%  Similarity=0.231  Sum_probs=173.5

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      +.||...+. +|...+++          ..+++|+.|.+|.||+... .....+.............-+.....+...++
T Consensus       189 ~~GHk~~V~-sVsv~~sg----------tr~~SgS~D~~lkiWs~~~-~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl  256 (423)
T KOG0313|consen  189 CRGHKRSVD-SVSVDSSG----------TRFCSGSWDTMLKIWSVET-DEEDELESSSNRRRKKQKREKEGGTRTPLVTL  256 (423)
T ss_pred             hccccccee-EEEecCCC----------CeEEeecccceeeecccCC-CccccccccchhhhhhhhhhhcccccCceEEe
Confidence            459999666 99999999          8999999999999999443 11111111111000000000111111133345


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG  254 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s  254 (568)
                      .||+.+| .+|.|+  + ...+.+++.|.+|+.||+.++      .....+.+ ...++++..+|..      ++||+|+
T Consensus       257 ~GHt~~V-s~V~w~--d-~~v~yS~SwDHTIk~WDletg------~~~~~~~~-~ksl~~i~~~~~~------~Ll~~gs  319 (423)
T KOG0313|consen  257 EGHTEPV-SSVVWS--D-ATVIYSVSWDHTIKVWDLETG------GLKSTLTT-NKSLNCISYSPLS------KLLASGS  319 (423)
T ss_pred             cccccce-eeEEEc--C-CCceEeecccceEEEEEeecc------cceeeeec-CcceeEeeccccc------ceeeecC
Confidence            8999999 999999  3 579999999999999999987      56666544 5668999999988      8999999


Q ss_pred             CCC-EEEEECCCCCc--ceeeeCCCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363          255 HGG-LKFWDIRDPFR--PLWDIHPAPKFIYGLDWLPDPGC-VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL  330 (568)
Q Consensus       255 ~d~-v~lwD~~~~~~--~~~~~~~h~~~i~~l~~sp~~~~-l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~  330 (568)
                      .|. |++||.|++..  ....+.+|...|.++.|+|...+ |++++.|+++++||+|...               .++..
T Consensus       320 sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k---------------~plyd  384 (423)
T KOG0313|consen  320 SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK---------------APLYD  384 (423)
T ss_pred             CCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC---------------Cccee
Confidence            999 99999998753  34778899999999999997665 5567889999999998744               45679


Q ss_pred             EecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          331 VNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       331 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      +.+|...|.++.|.. +.+|++||.|.+|+|+...
T Consensus       385 I~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  385 IAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             eccCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence            999999999999974 6789999999999999763

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.92  E-value=3e-23  Score=195.33  Aligned_cols=243  Identities=16%  Similarity=0.168  Sum_probs=191.5

Q ss_pred             CCcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-------------
Q 008363           87 IALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-------------  153 (568)
Q Consensus        87 ~~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-------------  153 (568)
                      ..-+.+..+.+|...++ ++.|+.++          .+||+|..+|.|+||...++.....+...-.             
T Consensus        94 ~~ge~~~eltgHKDSVt-~~~Fshdg----------tlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~i  162 (399)
T KOG0296|consen   94 STGEFAGELTGHKDSVT-CCSFSHDG----------TLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHI  162 (399)
T ss_pred             cCCcceeEecCCCCceE-EEEEccCc----------eEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccE
Confidence            33446667889999666 99999999          8999999999999999999877776642111             


Q ss_pred             -ccCCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCC--------------
Q 008363          154 -KEGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSS--------------  216 (568)
Q Consensus       154 -~~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~--------------  216 (568)
                       +.|+.++.+-.|.+-.  ..+.+.||..++ ++=.|.  |+|..+++|+.||+|++|++.++.+.              
T Consensus       163 llAG~~DGsvWmw~ip~~~~~kv~~Gh~~~c-t~G~f~--pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~  239 (399)
T KOG0296|consen  163 LLAGSTDGSVWMWQIPSQALCKVMSGHNSPC-TCGEFI--PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCI  239 (399)
T ss_pred             EEeecCCCcEEEEECCCcceeeEecCCCCCc-cccccc--CCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcc
Confidence             6788999999888766  567788999997 999988  88999999999999999999877431              


Q ss_pred             -----------------------CCCceeEEee--------CCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECC
Q 008363          217 -----------------------IDSRPLLCFS--------ADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIR  264 (568)
Q Consensus       217 -----------------------~~~~~~~~~~--------~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~  264 (568)
                                             ..++.+..+.        .|...+.+|.|.|..   ..-.++|+|+-|| |.|||+.
T Consensus       240 ~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s---s~lpL~A~G~vdG~i~iyD~a  316 (399)
T KOG0296|consen  240 SLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS---SKLPLAACGSVDGTIAIYDLA  316 (399)
T ss_pred             ccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc---cccchhhcccccceEEEEecc
Confidence                                   0111111111        122233344443332   1125788899999 9999998


Q ss_pred             CCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEe
Q 008363          265 DPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVS  344 (568)
Q Consensus       265 ~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~s  344 (568)
                      ..  .++..-.|...|..+.|.+ ..+|++++.+|.|+.||.|        +|++        +.++.||...|.+++++
T Consensus       317 ~~--~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaR--------tG~l--------~~~y~GH~~~Il~f~ls  377 (399)
T KOG0296|consen  317 AS--TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDAR--------TGQL--------KFTYTGHQMGILDFALS  377 (399)
T ss_pred             cc--hhheeccCCCceEEEEEcC-cchheeeccCceEEeeecc--------ccce--------EEEEecCchheeEEEEc
Confidence            64  4455558899999999998 7899999999999999996        4755        47999999999999999


Q ss_pred             cCCCEEEEEeCCCeEEEEEcC
Q 008363          345 RLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       345 p~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      |+.++++|+|.|++.+||++.
T Consensus       378 ~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  378 PQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             CCCcEEEEecCCCeEEEEecC
Confidence            999999999999999999873

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.92  E-value=1.8e-22  Score=197.92  Aligned_cols=228  Identities=19%  Similarity=0.328  Sum_probs=188.8

Q ss_pred             EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCC
Q 008363           93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTD  158 (568)
Q Consensus        93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~  158 (568)
                      .....|.. .+..+.|+|++          .+|++++.||.|++|++.+++.+..+..+..              +.+..
T Consensus        45 ~~~~~~~~-~i~~~~~~~~~----------~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  113 (289)
T cd00200          45 RTLKGHTG-PVRDVAASADG----------TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSR  113 (289)
T ss_pred             EEEecCCc-ceeEEEECCCC----------CEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecC
Confidence            34456777 44599999998          7999999999999999998766666655542              23444


Q ss_pred             CceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEE
Q 008363          159 PRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVS  236 (568)
Q Consensus       159 ~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~  236 (568)
                      +..+.+|+...  .......|...+ .+++|+  +++.++++++.||.|++||+...      +++..+..|...|.++.
T Consensus       114 ~~~i~~~~~~~~~~~~~~~~~~~~i-~~~~~~--~~~~~l~~~~~~~~i~i~d~~~~------~~~~~~~~~~~~i~~~~  184 (289)
T cd00200         114 DKTIKVWDVETGKCLTTLRGHTDWV-NSVAFS--PDGTFVASSSQDGTIKLWDLRTG------KCVATLTGHTGEVNSVA  184 (289)
T ss_pred             CCeEEEEECCCcEEEEEeccCCCcE-EEEEEc--CcCCEEEEEcCCCcEEEEEcccc------ccceeEecCccccceEE
Confidence            77888888753  444455788888 999999  66788888888999999999865      67778888999999999


Q ss_pred             EccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCC
Q 008363          237 WAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPA  315 (568)
Q Consensus       237 ~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~  315 (568)
                      |+|++      ..|++++.++ |++||++.. ..+..+..|...+.+++|+|++.++++++.||.|++||+..       
T Consensus       185 ~~~~~------~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~-------  250 (289)
T cd00200         185 FSPDG------EKLLSSSSDGTIKLWDLSTG-KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT-------  250 (289)
T ss_pred             ECCCc------CEEEEecCCCcEEEEECCCC-ceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC-------
Confidence            99998      7888888888 999999976 66777778888999999999988888888899999999953       


Q ss_pred             CCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363          316 TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQ  363 (568)
Q Consensus       316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd  363 (568)
                       ++        .+..+..|...|.+++|+|++.+|++++.||.|++|+
T Consensus       251 -~~--------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         251 -GE--------CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             -ce--------eEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence             32        2356778999999999999999999999999999996

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=8.8e-23  Score=188.80  Aligned_cols=206  Identities=14%  Similarity=0.227  Sum_probs=161.9

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeeccee
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRC  170 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~  170 (568)
                      .+..+.+|.+ .+.+++.+  +          .++|+|+.|-+|+|||++....+..+                      
T Consensus        35 ~lF~~~aH~~-sitavAVs--~----------~~~aSGssDetI~IYDm~k~~qlg~l----------------------   79 (362)
T KOG0294|consen   35 PLFAFSAHAG-SITALAVS--G----------PYVASGSSDETIHIYDMRKRKQLGIL----------------------   79 (362)
T ss_pred             cccccccccc-ceeEEEec--c----------eeEeccCCCCcEEEEeccchhhhcce----------------------
Confidence            3455678999 55488886  4          58999999999999999997766665                      


Q ss_pred             cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363          171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI  250 (568)
Q Consensus       171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l  250 (568)
                          ..|.+.| +++.|.+.....+|++|+.||.|.+|+...      ..++..+++|.+.|+.|+.+|.+      ++-
T Consensus        80 ----l~Hagsi-taL~F~~~~S~shLlS~sdDG~i~iw~~~~------W~~~~slK~H~~~Vt~lsiHPS~------KLA  142 (362)
T KOG0294|consen   80 ----LSHAGSI-TALKFYPPLSKSHLLSGSDDGHIIIWRVGS------WELLKSLKAHKGQVTDLSIHPSG------KLA  142 (362)
T ss_pred             ----eccccce-EEEEecCCcchhheeeecCCCcEEEEEcCC------eEEeeeecccccccceeEecCCC------ceE
Confidence                7789999 999998443334999999999999999874      38999999999999999999999      888


Q ss_pred             EEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCC---------------------------------------C
Q 008363          251 LTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDP---------------------------------------G  290 (568)
Q Consensus       251 as~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~---------------------------------------~  290 (568)
                      ++.+.|+ +++||+-.+. ....+. -...-+.|.|+|.|                                       .
T Consensus       143 LsVg~D~~lr~WNLV~Gr-~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~  220 (362)
T KOG0294|consen  143 LSVGGDQVLRTWNLVRGR-VAFVLN-LKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGS  220 (362)
T ss_pred             EEEcCCceeeeehhhcCc-cceeec-cCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCc
Confidence            8999998 9999997763 222111 01112335555544                                       5


Q ss_pred             EEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEe--cCCCEEEEEeCCCeEEEEEcCC
Q 008363          291 CVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVS--RLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       291 ~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~s--p~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                      +|++|++|+.|.+||...        +        .++..+.+|...|-++.+-  |++.+|+|+|.||.|++||++.
T Consensus       221 ~L~vG~d~~~i~~~D~ds--------~--------~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~  282 (362)
T KOG0294|consen  221 ELLVGGDNEWISLKDTDS--------D--------TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM  282 (362)
T ss_pred             eEEEecCCceEEEeccCC--------C--------ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence            677788888888888743        2        4457899999999998854  4578999999999999999954

>PTZ00421 coronin; Provisional

Probab=99.91  E-value=3.1e-22  Score=209.69  Aligned_cols=208  Identities=15%  Similarity=0.181  Sum_probs=159.3

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD  202 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D  202 (568)
                      ..+++++.+..+..|+...+..+..+..    .|..+         .....+.+|.+.| ++++|+|. ++.+|++|+.|
T Consensus        33 ~~~~~~n~~~~a~~w~~~gg~~v~~~~~----~G~~~---------~~~~~l~GH~~~V-~~v~fsP~-d~~~LaSgS~D   97 (493)
T PTZ00421         33 SNTIACNDRFIAVPWQQLGSTAVLKHTD----YGKLA---------SNPPILLGQEGPI-IDVAFNPF-DPQKLFTASED   97 (493)
T ss_pred             CCcEeECCceEEEEEecCCceEEeeccc----cccCC---------CCCceEeCCCCCE-EEEEEcCC-CCCEEEEEeCC
Confidence            4577778888888888766433221100    00000         0011237999999 99999932 67899999999


Q ss_pred             CeEEEEEccCCCCC-CCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCe
Q 008363          203 GTVALWKFVASDSS-IDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFI  280 (568)
Q Consensus       203 g~I~iwd~~~~~~~-~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i  280 (568)
                      |+|+|||+...... ....++..+.+|...|.+|+|+|.+     .++|++++.|+ |+|||+.++ ..+..+.+|...|
T Consensus        98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-----~~iLaSgs~DgtVrIWDl~tg-~~~~~l~~h~~~V  171 (493)
T PTZ00421         98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-----MNVLASAGADMVVNVWDVERG-KAVEVIKCHSDQI  171 (493)
T ss_pred             CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-----CCEEEEEeCCCEEEEEECCCC-eEEEEEcCCCCce
Confidence            99999999754221 1124677889999999999999985     26999999999 999999987 7778888999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCC-EEEEEEecCCCEEEEEe----C
Q 008363          281 YGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFA-IWSVQVSRLTGMVAYCS----A  355 (568)
Q Consensus       281 ~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~-V~~l~~sp~~~~l~s~s----~  355 (568)
                      ++++|+|++.+|++++.|++|+|||++.        ++.        +..+.+|.+. +..+.|.+++..|++++    .
T Consensus       172 ~sla~spdG~lLatgs~Dg~IrIwD~rs--------g~~--------v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~  235 (493)
T PTZ00421        172 TSLEWNLDGSLLCTTSKDKKLNIIDPRD--------GTI--------VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQ  235 (493)
T ss_pred             EEEEEECCCCEEEEecCCCEEEEEECCC--------CcE--------EEEEecCCCCcceEEEEcCCCCeEEEEecCCCC
Confidence            9999999999999999999999999964        433        3577888765 45678999887777765    4


Q ss_pred             CCeEEEEEcCCC
Q 008363          356 DGTVHRFQLTAK  367 (568)
Q Consensus       356 Dg~v~iwd~~~~  367 (568)
                      |+.|++||+...
T Consensus       236 Dr~VklWDlr~~  247 (493)
T PTZ00421        236 QRQIMLWDTRKM  247 (493)
T ss_pred             CCeEEEEeCCCC
Confidence            799999999754

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.91  E-value=2.2e-23  Score=191.98  Aligned_cols=234  Identities=15%  Similarity=0.273  Sum_probs=177.9

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS  171 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~  171 (568)
                      ..+...|.+ ++++.+|+|+|          .++|+|+.|-+|+|.|++..-...  ......++....   -.|   ..
T Consensus       105 t~ylt~HK~-~cR~aafs~DG----------~lvATGsaD~SIKildvermlaks--~~~em~~~~~qa---~hP---vI  165 (430)
T KOG0640|consen  105 TKYLTSHKS-PCRAAAFSPDG----------SLVATGSADASIKILDVERMLAKS--KPKEMISGDTQA---RHP---VI  165 (430)
T ss_pred             eEEEeeccc-ceeeeeeCCCC----------cEEEccCCcceEEEeehhhhhhhc--chhhhccCCccc---CCc---eE
Confidence            344567888 66699999999          899999999999999998411000  000000111100   011   23


Q ss_pred             ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363          172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la  251 (568)
                      .++..|...| .+++|+  |...+|++|+.|++|++||+.....   .+....| ....+|.+|.|+|.|      .+|+
T Consensus       166 RTlYDH~dev-n~l~FH--Pre~ILiS~srD~tvKlFDfsK~sa---KrA~K~~-qd~~~vrsiSfHPsG------efll  232 (430)
T KOG0640|consen  166 RTLYDHVDEV-NDLDFH--PRETILISGSRDNTVKLFDFSKTSA---KRAFKVF-QDTEPVRSISFHPSG------EFLL  232 (430)
T ss_pred             eehhhccCcc-cceeec--chhheEEeccCCCeEEEEecccHHH---HHHHHHh-hccceeeeEeecCCC------ceEE
Confidence            4458999999 999999  7788999999999999999974421   1222233 346789999999999      8998


Q ss_pred             EEcCCC-EEEEECCCCCcceeee---CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccc
Q 008363          252 TAGHGG-LKFWDIRDPFRPLWDI---HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQG  327 (568)
Q Consensus       252 s~s~d~-v~lwD~~~~~~~~~~~---~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~  327 (568)
                      .|.+.- +++||+.+- ++...-   ..|.+.|+++.+++.++..++++.||.|+|||-        +.++++       
T Consensus       233 vgTdHp~~rlYdv~T~-QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDG--------VS~rCv-------  296 (430)
T KOG0640|consen  233 VGTDHPTLRLYDVNTY-QCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDG--------VSNRCV-------  296 (430)
T ss_pred             EecCCCceeEEeccce-eEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeecc--------ccHHHH-------
Confidence            888877 999999976 655333   378999999999999999999999999999997        345443       


Q ss_pred             eEEEe-cCC-CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCC
Q 008363          328 LHLVN-CSS-FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHS  374 (568)
Q Consensus       328 l~~~~-~h~-~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~  374 (568)
                       .++. .|. ..|.+..|..+++||++.+.|..|++|++.+++..+.+.
T Consensus       297 -~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt  344 (430)
T KOG0640|consen  297 -RTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT  344 (430)
T ss_pred             -HHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence             4443 454 579999999999999999999999999999988776654

>PTZ00420 coronin; Provisional

Probab=99.91  E-value=3.9e-22  Score=209.86  Aligned_cols=188  Identities=16%  Similarity=0.231  Sum_probs=147.4

Q ss_pred             EeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEE
Q 008363          128 LLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVAL  207 (568)
Q Consensus       128 ~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~i  207 (568)
                      |+.++.|+||+......+..+                          .+|...| ++++|+|. ++.+|++|+.||+|+|
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L--------------------------~gH~~~V-~~lafsP~-~~~lLASgS~DgtIrI  101 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKL--------------------------KGHTSSI-LDLQFNPC-FSEILASGSEDLTIRV  101 (568)
T ss_pred             CCceeEEEeeecCCCceEEEE--------------------------cCCCCCE-EEEEEcCC-CCCEEEEEeCCCeEEE
Confidence            556778888887665444444                          8899999 99999933 2679999999999999


Q ss_pred             EEccCCCCC--CCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEE
Q 008363          208 WKFVASDSS--IDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLD  284 (568)
Q Consensus       208 wd~~~~~~~--~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~  284 (568)
                      ||+.+....  ....++..+.+|...|.+|+|+|++.     .+|++++.|+ |+|||++++ ..+..+. |...|.+++
T Consensus       102 WDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~-----~iLaSgS~DgtIrIWDl~tg-~~~~~i~-~~~~V~Sls  174 (568)
T PTZ00420        102 WEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNY-----YIMCSSGFDSFVNIWDIENE-KRAFQIN-MPKKLSSLK  174 (568)
T ss_pred             EECCCCCccccccccceEEeecCCCcEEEEEECCCCC-----eEEEEEeCCCeEEEEECCCC-cEEEEEe-cCCcEEEEE
Confidence            999754210  01134567889999999999999872     4678999998 999999987 5555554 567899999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE-----EEEecCCCEEEEEeCCC--
Q 008363          285 WLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS-----VQVSRLTGMVAYCSADG--  357 (568)
Q Consensus       285 ~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~-----l~~sp~~~~l~s~s~Dg--  357 (568)
                      |+|+|.+|++++.|+.|+|||++.        ++.        +..+.+|.+.+.+     ..|++++.+|++++.|+  
T Consensus       175 wspdG~lLat~s~D~~IrIwD~Rs--------g~~--------i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~  238 (568)
T PTZ00420        175 WNIKGNLLSGTCVGKHMHIIDPRK--------QEI--------ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNN  238 (568)
T ss_pred             ECCCCCEEEEEecCCEEEEEECCC--------CcE--------EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCC
Confidence            999999999999999999999964        433        4678889876433     34568889999988775  


Q ss_pred             --eEEEEEcCC
Q 008363          358 --TVHRFQLTA  366 (568)
Q Consensus       358 --~v~iwd~~~  366 (568)
                        .|+|||+..
T Consensus       239 ~R~VkLWDlr~  249 (568)
T PTZ00420        239 MREMKLWDLKN  249 (568)
T ss_pred             ccEEEEEECCC
Confidence              799999984

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=5.3e-24  Score=217.45  Aligned_cols=200  Identities=23%  Similarity=0.432  Sum_probs=167.6

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC---ceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL---RTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~---~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      +|+|.....         ++||+++..|.|.+||+...   ..+.                          .+..|...+
T Consensus        92 DVkW~~~~~---------NlIAT~s~nG~i~vWdlnk~~rnk~l~--------------------------~f~EH~Rs~  136 (839)
T KOG0269|consen   92 DVKWGQLYS---------NLIATCSTNGVISVWDLNKSIRNKLLT--------------------------VFNEHERSA  136 (839)
T ss_pred             hcccccchh---------hhheeecCCCcEEEEecCccccchhhh--------------------------Hhhhhccce
Confidence            788885443         79999999999999999872   2222                          237899999


Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF  260 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l  260 (568)
                       .+++|++... .+|++|+.||+|++||++..      ....++.+....|++|+|+|..     ++.|+++.+.| |.+
T Consensus       137 -~~ldfh~tep-~iliSGSQDg~vK~~DlR~~------~S~~t~~~nSESiRDV~fsp~~-----~~~F~s~~dsG~lql  203 (839)
T KOG0269|consen  137 -NKLDFHSTEP-NILISGSQDGTVKCWDLRSK------KSKSTFRSNSESIRDVKFSPGY-----GNKFASIHDSGYLQL  203 (839)
T ss_pred             -eeeeeccCCc-cEEEecCCCceEEEEeeecc------cccccccccchhhhceeeccCC-----CceEEEecCCceEEE
Confidence             9999997744 69999999999999999977      6667777888999999999986     58999999999 999


Q ss_pred             EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE
Q 008363          261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS  340 (568)
Q Consensus       261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~  340 (568)
                      ||+|.+.++...+..|.++|.++.|+|++.+|++||.|+.|+|||...        ++.      .+++++. ...+|..
T Consensus       204 WDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~--------~~~------~~~~tIn-Tiapv~r  268 (839)
T KOG0269|consen  204 WDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTD--------SRA------KPKHTIN-TIAPVGR  268 (839)
T ss_pred             eeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccC--------CCc------cceeEEe-ecceeee
Confidence            999999899999999999999999999999999999999999999942        222      2334443 4478999


Q ss_pred             EEEecCC-CEEEEEe--CCCeEEEEEcCCC
Q 008363          341 VQVSRLT-GMVAYCS--ADGTVHRFQLTAK  367 (568)
Q Consensus       341 l~~sp~~-~~l~s~s--~Dg~v~iwd~~~~  367 (568)
                      |.|-|.. ..|++++  .|-.|+|||+...
T Consensus       269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRP  298 (839)
T KOG0269|consen  269 VKWRPARSYHLATCSMVVDTSVHVWDVRRP  298 (839)
T ss_pred             eeeccCccchhhhhhccccceEEEEeeccc
Confidence            9999985 6677776  5788999999644

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.91  E-value=2.7e-22  Score=225.92  Aligned_cols=231  Identities=15%  Similarity=0.184  Sum_probs=181.8

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC---------------ccCCCCceEEEee
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM---------------KEGTDPRFVKLEP  166 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~---------------~~~~~~~~v~~~~  166 (568)
                      .+.+++|+|...         .+||+++.||+|+|||+.+++.+..+.+|..               ++++.++.+++|+
T Consensus       534 ~v~~l~~~~~~~---------~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd  604 (793)
T PLN00181        534 KLSGICWNSYIK---------SQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWS  604 (793)
T ss_pred             ceeeEEeccCCC---------CEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEE
Confidence            455999998643         7999999999999999999888777766543               5678899999999


Q ss_pred             cce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCC
Q 008363          167 VFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDS  244 (568)
Q Consensus       167 ~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~  244 (568)
                      ...  +......+ ..+ .++.|++ ++|.+|++|+.||+|++||++..     ..++..+.+|...|.++.|. ++   
T Consensus       605 ~~~~~~~~~~~~~-~~v-~~v~~~~-~~g~~latgs~dg~I~iwD~~~~-----~~~~~~~~~h~~~V~~v~f~-~~---  672 (793)
T PLN00181        605 INQGVSIGTIKTK-ANI-CCVQFPS-ESGRSLAFGSADHKVYYYDLRNP-----KLPLCTMIGHSKTVSYVRFV-DS---  672 (793)
T ss_pred             CCCCcEEEEEecC-CCe-EEEEEeC-CCCCEEEEEeCCCeEEEEECCCC-----CccceEecCCCCCEEEEEEe-CC---
Confidence            865  33333333 567 8999952 46889999999999999999865     13566778999999999997 44   


Q ss_pred             CCCcEEEEEcCCC-EEEEECCCC-----CcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCC
Q 008363          245 DSANVILTAGHGG-LKFWDIRDP-----FRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGK  318 (568)
Q Consensus       245 ~~~~~las~s~d~-v~lwD~~~~-----~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~  318 (568)
                         .+|++++.|+ |++||++..     ..++..+.+|...+++++|+|++.+|++|+.|+.|++|+....        .
T Consensus       673 ---~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~--------~  741 (793)
T PLN00181        673 ---STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP--------M  741 (793)
T ss_pred             ---CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC--------C
Confidence               6899999999 999999853     2567788899999999999999999999999999999997431        1


Q ss_pred             CccCcc---ccce--EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          319 PFAGTK---QQGL--HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       319 ~~~~~~---~~~l--~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                      ++....   ...+  .....|...|.+++|+|++.+|++|+.||.|+||++
T Consensus       742 ~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        742 PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            110000   0000  122446678999999999999999999999999997

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=2.5e-23  Score=208.77  Aligned_cols=220  Identities=17%  Similarity=0.251  Sum_probs=186.2

Q ss_pred             cEEEEEeCCCcEEEEECCCCc------eeeEEeccCC--------------ccCCCCceEEEeecce----ecccccCCc
Q 008363          123 GYLAVLLGNGSLEVWEVPLLR------TMKAIYLSSM--------------KEGTDPRFVKLEPVFR----CSMLKCGGT  178 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~------~~~~l~~~~~--------------~~~~~~~~v~~~~~~~----~~~~~~~h~  178 (568)
                      ++|.+|+.||.|++|++..-.      ++..+..|..              ++++.|..|++|....    |..+...|.
T Consensus        38 ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~  117 (735)
T KOG0308|consen   38 RYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHK  117 (735)
T ss_pred             ceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhccc
Confidence            689999999999999987621      3455555554              6889999999999876    778888999


Q ss_pred             CccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCC----CCCCceeEEee-CCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363          179 QSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDS----SIDSRPLLCFS-ADTLPIRAVSWAPAESDSDSANVILTA  253 (568)
Q Consensus       179 ~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~----~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~~~~las~  253 (568)
                      ..| .||++- .++..++|+|+-|+.|.|||++++..    ..+......+. ++...|++++.++.+      ..|++|
T Consensus       118 DYV-kcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~------t~ivsG  189 (735)
T KOG0308|consen  118 DYV-KCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG------TIIVSG  189 (735)
T ss_pred             chh-eeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc------eEEEec
Confidence            999 999971 26778999999999999999996622    01112222333 888999999999999      899999


Q ss_pred             cCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363          254 GHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN  332 (568)
Q Consensus       254 s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~  332 (568)
                      +..+ |++||.++. ..+..+.+|+..|..+..++||+.+++++.||+|++||+          |+.      .|+.++.
T Consensus       190 gtek~lr~wDprt~-~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdL----------gqQ------rCl~T~~  252 (735)
T KOG0308|consen  190 GTEKDLRLWDPRTC-KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDL----------GQQ------RCLATYI  252 (735)
T ss_pred             CcccceEEeccccc-cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeec----------ccc------ceeeeEE
Confidence            9999 999999988 677778899999999999999999999999999999999          322      6788999


Q ss_pred             cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363          333 CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       333 ~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~  367 (568)
                      .|...||++..+|.-..+.+|+.||.|..=|+.+.
T Consensus       253 vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  253 VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            99999999999999999999999999999999763

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.6e-21  Score=172.29  Aligned_cols=238  Identities=17%  Similarity=0.235  Sum_probs=182.8

Q ss_pred             CcceEEEee--ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceee-----EEeccCC-------
Q 008363           88 ALPRVVLCL--AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMK-----AIYLSSM-------  153 (568)
Q Consensus        88 ~~p~~~~~~--~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~-----~l~~~~~-------  153 (568)
                      ..|..+.+.  .|..+.|+|.+|+|.|          .+||+|+.|.+|++..+....+..     .+.-|..       
T Consensus        75 ~~pp~v~~kr~khhkgsiyc~~ws~~g----------eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~f  144 (350)
T KOG0641|consen   75 KQPPSVLCKRNKHHKGSIYCTAWSPCG----------ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAF  144 (350)
T ss_pred             cCCCeEEeeeccccCccEEEEEecCcc----------CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEE
Confidence            344444433  3555588899999999          799999999999997665422211     1111111       


Q ss_pred             ------------ccCCCCceEEEeecce--ecccccCCcCccceEE-EEccCCCCCEEEEEeCCCeEEEEEccCCCCCCC
Q 008363          154 ------------KEGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTM-EWSTSPPHDYLLAGCHDGTVALWKFVASDSSID  218 (568)
Q Consensus       154 ------------~~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v-~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~  218 (568)
                                  ..|..+..|.+.+-.+  ....+.||++-| +++ .|+    |-++++|+.|.+|++||++-.     
T Consensus       145 ld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghi-lalyswn----~~m~~sgsqdktirfwdlrv~-----  214 (350)
T KOG0641|consen  145 LDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHI-LALYSWN----GAMFASGSQDKTIRFWDLRVN-----  214 (350)
T ss_pred             ecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccE-EEEEEec----CcEEEccCCCceEEEEeeecc-----
Confidence                        2234455555544433  344567999998 765 676    679999999999999999855     


Q ss_pred             CceeEEeeC--C-----CCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCC
Q 008363          219 SRPLLCFSA--D-----TLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPG  290 (568)
Q Consensus       219 ~~~~~~~~~--h-----~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~  290 (568)
                       .++.++..  |     ++.|.+++..|.|      .+|++|..|. ..+||+|.+ +++..+..|...|.++.|+|...
T Consensus       215 -~~v~~l~~~~~~~glessavaav~vdpsg------rll~sg~~dssc~lydirg~-r~iq~f~phsadir~vrfsp~a~  286 (350)
T KOG0641|consen  215 -SCVNTLDNDFHDGGLESSAVAAVAVDPSG------RLLASGHADSSCMLYDIRGG-RMIQRFHPHSADIRCVRFSPGAH  286 (350)
T ss_pred             -ceeeeccCcccCCCcccceeEEEEECCCc------ceeeeccCCCceEEEEeeCC-ceeeeeCCCccceeEEEeCCCce
Confidence             55554421  2     3579999999999      9999999998 999999977 99999999999999999999999


Q ss_pred             EEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          291 CVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       291 ~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      ||++++.|..|++-|++         |.+-   .+-++.....|...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus       287 yllt~syd~~ikltdlq---------gdla---~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  287 YLLTCSYDMKIKLTDLQ---------GDLA---HELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EEEEecccceEEEeecc---------cchh---hcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            99999999999999994         3331   123455677899999999999999889999999999999873

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.91  E-value=2.8e-23  Score=186.10  Aligned_cols=272  Identities=13%  Similarity=0.130  Sum_probs=222.1

Q ss_pred             EEeeccCCceeeEEEEcc---CCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------cc
Q 008363           93 VLCLAHNGKVAWDVKWKP---YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KE  155 (568)
Q Consensus        93 ~~~~~h~~~~v~~v~~sp---~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~  155 (568)
                      +.|.+|+..+| +++|+|   +|          -+|++++.||.-.+-+-++|.-+.++.+|..              ++
T Consensus         8 l~c~ghtrpvv-dl~~s~itp~g----------~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aas   76 (334)
T KOG0278|consen    8 LTCHGHTRPVV-DLAFSPITPDG----------YFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAAS   76 (334)
T ss_pred             eEEcCCCccee-EEeccCCCCCc----------eEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhh
Confidence            45789999888 999986   45          6999999999999999999999999999876              56


Q ss_pred             CCCCceEEEeecceec-ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeE
Q 008363          156 GTDPRFVKLEPVFRCS-MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRA  234 (568)
Q Consensus       156 ~~~~~~v~~~~~~~~~-~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~  234 (568)
                      ++.|-..++|+..+.. .....|...| .+++|+  .|..+|++|+.+..++|||++..     ..+...+.+|.+.|..
T Consensus        77 aaadftakvw~a~tgdelhsf~hkhiv-k~~af~--~ds~~lltgg~ekllrvfdln~p-----~App~E~~ghtg~Ir~  148 (334)
T KOG0278|consen   77 AAADFTAKVWDAVTGDELHSFEHKHIV-KAVAFS--QDSNYLLTGGQEKLLRVFDLNRP-----KAPPKEISGHTGGIRT  148 (334)
T ss_pred             hcccchhhhhhhhhhhhhhhhhhhhee-eeEEec--ccchhhhccchHHHhhhhhccCC-----CCCchhhcCCCCccee
Confidence            6777778888887632 2334688888 999999  88999999999999999999865     3567788999999999


Q ss_pred             EEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCC
Q 008363          235 VSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDV  313 (568)
Q Consensus       235 v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~  313 (568)
                      +.|+...      +.|+|..+|+ ||+||.+++ ..+..+. ...+|+++.++++|++|.+ ...+.|.+||...+.   
T Consensus       149 v~wc~eD------~~iLSSadd~tVRLWD~rTg-t~v~sL~-~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~---  216 (334)
T KOG0278|consen  149 VLWCHED------KCILSSADDKTVRLWDHRTG-TEVQSLE-FNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFG---  216 (334)
T ss_pred             EEEeccC------ceEEeeccCCceEEEEeccC-cEEEEEe-cCCCCcceeeccCCCEEEE-ecCceeEEecccccc---
Confidence            9999988      7888888888 999999998 5565553 3567999999999996555 566789999996533   


Q ss_pred             CCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCce
Q 008363          314 PATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAI  393 (568)
Q Consensus       314 ~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i  393 (568)
                                   .+..+. -...|.+...+|+...++.|+.|+.++.||+.++.....+.........|..++++|+..
T Consensus       217 -------------~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~y  282 (334)
T KOG0278|consen  217 -------------LLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELY  282 (334)
T ss_pred             -------------ceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCcee
Confidence                         112322 345688899999999999999999999999999876655444445567899999999999


Q ss_pred             EEcccCCCCCcccccc
Q 008363          394 TVNTPLDNTPVPLKKT  409 (568)
Q Consensus       394 ~~~~~~~~~~~~~k~~  409 (568)
                      ++++..+.+.+.+--+
T Consensus       283 AsGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  283 ASGSEDGTIRLWQTTP  298 (334)
T ss_pred             eccCCCceEEEEEecC
Confidence            9999988887766444

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.91  E-value=1.1e-22  Score=184.05  Aligned_cols=250  Identities=16%  Similarity=0.179  Sum_probs=192.7

Q ss_pred             CcccCCCCCcccCCCCCCCcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEe
Q 008363           70 GDFLSKPSLVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIY  149 (568)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~  149 (568)
                      |-++++.......++....-.++-.+.+|++ .||++...-+.          ..|++|+.|.+++|||+++|+++..+.
T Consensus        23 DLlFscaKD~~~~vw~s~nGerlGty~GHtG-avW~~Did~~s----------~~liTGSAD~t~kLWDv~tGk~la~~k   91 (327)
T KOG0643|consen   23 DLLFSCAKDSTPTVWYSLNGERLGTYDGHTG-AVWCCDIDWDS----------KHLITGSADQTAKLWDVETGKQLATWK   91 (327)
T ss_pred             cEEEEecCCCCceEEEecCCceeeeecCCCc-eEEEEEecCCc----------ceeeeccccceeEEEEcCCCcEEEEee
Confidence            3344444333333334445567888899999 88999999888          799999999999999999999987752


Q ss_pred             ccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeC-----CCeEEEEEccCCCCCC-CCceeE
Q 008363          150 LSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH-----DGTVALWKFVASDSSI-DSRPLL  223 (568)
Q Consensus       150 ~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~-----Dg~I~iwd~~~~~~~~-~~~~~~  223 (568)
                                                 ....| ..+.|+  .+|++++....     .+.|.++|++...... ...|+.
T Consensus        92 ---------------------------~~~~V-k~~~F~--~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~  141 (327)
T KOG0643|consen   92 ---------------------------TNSPV-KRVDFS--FGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYL  141 (327)
T ss_pred             ---------------------------cCCee-EEEeec--cCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceE
Confidence                                       23445 889998  77877776653     4679999998543211 235677


Q ss_pred             EeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 008363          224 CFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMR  302 (568)
Q Consensus       224 ~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~  302 (568)
                      .+..+.+.++.+-|.|.+      .+|++|..++ |..||++++...+.....|...|+.|+++||..++++++.|.+-+
T Consensus       142 kI~t~~skit~a~Wg~l~------~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttak  215 (327)
T KOG0643|consen  142 KIPTPDSKITSALWGPLG------ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAK  215 (327)
T ss_pred             EecCCccceeeeeecccC------CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccce
Confidence            888888999999999999      8999999999 999999998777777788999999999999999999999999999


Q ss_pred             EEEcccccc------CCCCC---------------CCC---ccCc---------------cccceEEEecCCCCEEEEEE
Q 008363          303 IVSLLKAAY------DVPAT---------------GKP---FAGT---------------KQQGLHLVNCSSFAIWSVQV  343 (568)
Q Consensus       303 lwd~~~~~~------~~~~~---------------g~~---~~~~---------------~~~~l~~~~~h~~~V~~l~~  343 (568)
                      +||.+.+.-      +.|+.               |+.   +..+               -.+.+..+++|-++|++|+|
T Consensus       216 l~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAf  295 (327)
T KOG0643|consen  216 LVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAF  295 (327)
T ss_pred             eeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEE
Confidence            999876531      11111               000   0000               01234557899999999999


Q ss_pred             ecCCCEEEEEeCCCeEEEEEcCC
Q 008363          344 SRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       344 sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                      +|+|+..++|+.||.|++.-+..
T Consensus       296 hPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  296 HPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             CCCCcccccCCCCceEEEEEecc
Confidence            99999999999999999987643

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=2.9e-23  Score=197.98  Aligned_cols=207  Identities=21%  Similarity=0.330  Sum_probs=162.3

Q ss_pred             EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363           94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML  173 (568)
Q Consensus        94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~  173 (568)
                      .+..|.. -||-+.||++|          ++||+++.|.+..||.+.....+.                 +      ..+
T Consensus       219 il~~htd-EVWfl~FS~nG----------kyLAsaSkD~Taiiw~v~~d~~~k-----------------l------~~t  264 (519)
T KOG0293|consen  219 ILQDHTD-EVWFLQFSHNG----------KYLASASKDSTAIIWIVVYDVHFK-----------------L------KKT  264 (519)
T ss_pred             hHhhCCC-cEEEEEEcCCC----------eeEeeccCCceEEEEEEecCccee-----------------e------eee
Confidence            3567888 78899999999          899999999999999987633211                 1      122


Q ss_pred             ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe-eCCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363          174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF-SADTLPIRAVSWAPAESDSDSANVILT  252 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~~~~~~las  252 (568)
                      +.||..+| ..+.|+  ||.++|++++.|..+.+||+.++      ...+.+ .+|...+.+++|.|++      ..|++
T Consensus       265 lvgh~~~V-~yi~wS--PDdryLlaCg~~e~~~lwDv~tg------d~~~~y~~~~~~S~~sc~W~pDg------~~~V~  329 (519)
T KOG0293|consen  265 LVGHSQPV-SYIMWS--PDDRYLLACGFDEVLSLWDVDTG------DLRHLYPSGLGFSVSSCAWCPDG------FRFVT  329 (519)
T ss_pred             eecccCce-EEEEEC--CCCCeEEecCchHheeeccCCcc------hhhhhcccCcCCCcceeEEccCC------ceeEe
Confidence            28999999 999999  88999999999999999999988      555544 2346789999999999      88999


Q ss_pred             EcCCC-EEEEECCCCCc---------ceeee-------------------------------CCCCCCeEEEEEcCCC--
Q 008363          253 AGHGG-LKFWDIRDPFR---------PLWDI-------------------------------HPAPKFIYGLDWLPDP--  289 (568)
Q Consensus       253 ~s~d~-v~lwD~~~~~~---------~~~~~-------------------------------~~h~~~i~~l~~sp~~--  289 (568)
                      |+.|+ +..||+.....         .+..+                               .....+|++++.|.++  
T Consensus       330 Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~  409 (519)
T KOG0293|consen  330 GSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKL  409 (519)
T ss_pred             cCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcE
Confidence            99998 99999865310         00000                               0123456666666655  


Q ss_pred             -------------------------------------------CEEEEEeCCCcEEEEEccccccCCCCCCCCccCcccc
Q 008363          290 -------------------------------------------GCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQ  326 (568)
Q Consensus       290 -------------------------------------------~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~  326 (568)
                                                                 .++++|++|+.|+||+..        +|++       
T Consensus       410 ~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~--------sgkl-------  474 (519)
T KOG0293|consen  410 ALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI--------SGKL-------  474 (519)
T ss_pred             EEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc--------CCce-------
Confidence                                                       567778888888888874        4655       


Q ss_pred             ceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcC
Q 008363          327 GLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       327 ~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~  365 (568)
                       +..+.||...|++|+|+|.. .++|++|.||+|+||-..
T Consensus       475 -l~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  475 -LAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             -eEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence             47999999999999999986 789999999999999874

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.91  E-value=2e-22  Score=197.20  Aligned_cols=256  Identities=15%  Similarity=0.150  Sum_probs=183.9

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS  171 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~  171 (568)
                      -+.+.+|+. .|.++++.|.|          ..|++|+.|.+|++||+.........            +-.+.      
T Consensus       160 Ei~l~hgtk-~Vsal~~Dp~G----------aR~~sGs~Dy~v~~wDf~gMdas~~~------------fr~l~------  210 (641)
T KOG0772|consen  160 EIQLKHGTK-IVSALAVDPSG----------ARFVSGSLDYTVKFWDFQGMDASMRS------------FRQLQ------  210 (641)
T ss_pred             eEeccCCce-EEEEeeecCCC----------ceeeeccccceEEEEecccccccchh------------hhccC------
Confidence            344455665 77799999999          79999999999999999874322110            00011      


Q ss_pred             ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCC------CCCceeEEeeCCCCCeeEEEEccCCCCCC
Q 008363          172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSS------IDSRPLLCFSADTLPIRAVSWAPAESDSD  245 (568)
Q Consensus       172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~------~~~~~~~~~~~h~~~V~~v~~~p~~~~~~  245 (568)
                         ......| .+++|+  +.|+.|++.+....++|+|-......      .-+.-+..-+||...++|.+|+|...   
T Consensus       211 ---P~E~h~i-~sl~ys--~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k---  281 (641)
T KOG0772|consen  211 ---PCETHQI-NSLQYS--VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK---  281 (641)
T ss_pred             ---ccccccc-ceeeec--CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcc---
Confidence               1222345 789999  67888888888889999996543221      01112234468999999999999974   


Q ss_pred             CCcEEEEEcCCC-EEEEECCCCCcceeeeC-----CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCC
Q 008363          246 SANVILTAGHGG-LKFWDIRDPFRPLWDIH-----PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKP  319 (568)
Q Consensus       246 ~~~~las~s~d~-v~lwD~~~~~~~~~~~~-----~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~  319 (568)
                        ..|+|++.|+ +|+||+......+..+.     +..-.+++++|+|||..|++|+.||.|.+|+.+...      -++
T Consensus       282 --~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~------v~p  353 (641)
T KOG0772|consen  282 --EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRT------VRP  353 (641)
T ss_pred             --cceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcc------ccc
Confidence              8899999999 99999998765554443     334467999999999999999999999999985422      111


Q ss_pred             ccCccccceEEEecCCC--CEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee---ccCCCCCcceeeeecccCCCCceE
Q 008363          320 FAGTKQQGLHLVNCSSF--AIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE---KDHSRNRPMHFLCGSVTEDESAIT  394 (568)
Q Consensus       320 ~~~~~~~~l~~~~~h~~--~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~---~~~~~~~~~~~~~~s~~~~~~~i~  394 (568)
                             .+..-..|..  .|+||.||++|++|++-+.|+++++|||...+..   ...-..+.+...| .|+++...|.
T Consensus       354 -------~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc-~FSPd~kli~  425 (641)
T KOG0772|consen  354 -------VMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDC-CFSPDDKLIL  425 (641)
T ss_pred             -------ceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCcc-ccCCCceEEE
Confidence                   1234567876  8999999999999999999999999999764322   1111223333334 5889988888


Q ss_pred             EcccCCC
Q 008363          395 VNTPLDN  401 (568)
Q Consensus       395 ~~~~~~~  401 (568)
                      .|+...+
T Consensus       426 TGtS~~~  432 (641)
T KOG0772|consen  426 TGTSAPN  432 (641)
T ss_pred             ecccccC
Confidence            8765443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.91  E-value=3.4e-22  Score=180.95  Aligned_cols=214  Identities=21%  Similarity=0.261  Sum_probs=184.0

Q ss_pred             EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecc
Q 008363           93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSM  172 (568)
Q Consensus        93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~  172 (568)
                      +...+|.. .+..|+|+.+|          .+|.+|+.|.++.||-.-+|+.+.++                        
T Consensus         4 i~l~GHER-plTqiKyN~eG----------DLlFscaKD~~~~vw~s~nGerlGty------------------------   48 (327)
T KOG0643|consen    4 ILLQGHER-PLTQIKYNREG----------DLLFSCAKDSTPTVWYSLNGERLGTY------------------------   48 (327)
T ss_pred             cccccCcc-ccceEEecCCC----------cEEEEecCCCCceEEEecCCceeeee------------------------
Confidence            34578999 55599999999          79999999999999998888988887                        


Q ss_pred             cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363          173 LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILT  252 (568)
Q Consensus       173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las  252 (568)
                        .||++.| +|++..  .+..++++|+.|.+++|||+.++      +++..++ -..+|..+.|++.+      ++++.
T Consensus        49 --~GHtGav-W~~Did--~~s~~liTGSAD~t~kLWDv~tG------k~la~~k-~~~~Vk~~~F~~~g------n~~l~  110 (327)
T KOG0643|consen   49 --DGHTGAV-WCCDID--WDSKHLITGSADQTAKLWDVETG------KQLATWK-TNSPVKRVDFSFGG------NLILA  110 (327)
T ss_pred             --cCCCceE-EEEEec--CCcceeeeccccceeEEEEcCCC------cEEEEee-cCCeeEEEeeccCC------cEEEE
Confidence              8999999 999876  77889999999999999999988      7777774 36779999999999      67666


Q ss_pred             EcCC-----C-EEEEECCCCC------cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCc
Q 008363          253 AGHG-----G-LKFWDIRDPF------RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPF  320 (568)
Q Consensus       253 ~s~d-----~-v~lwD~~~~~------~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~  320 (568)
                      +.++     + |.++|++...      .|+..+..+...++.+-|.|-+.+|++|..||.|..||+++        |..+
T Consensus       111 ~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~--------g~~~  182 (327)
T KOG0643|consen  111 STDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDART--------GKEL  182 (327)
T ss_pred             EehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEccc--------Ccee
Confidence            6542     5 9999999432      56777878889999999999999999999999999999965        4332


Q ss_pred             cCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCC
Q 008363          321 AGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHS  374 (568)
Q Consensus       321 ~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~  374 (568)
                             +.....|...|+.|+++++..+++|+|.|.+-++||+.+-.+.+.+.
T Consensus       183 -------v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~  229 (327)
T KOG0643|consen  183 -------VDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT  229 (327)
T ss_pred             -------eechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence                   35667799999999999999999999999999999998887776644

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=6.3e-23  Score=189.45  Aligned_cols=252  Identities=16%  Similarity=0.265  Sum_probs=197.0

Q ss_pred             cceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEE------CCCCceeeEEeccCC---------
Q 008363           89 LPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWE------VPLLRTMKAIYLSSM---------  153 (568)
Q Consensus        89 ~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd------~~~~~~~~~l~~~~~---------  153 (568)
                      -..+..+.+|.|.+. +|+|++.+          .+++++++|++..||.      ++....-....+...         
T Consensus       180 g~CL~~Y~GH~GSVN-sikfh~s~----------~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~  248 (481)
T KOG0300|consen  180 GACLATYTGHTGSVN-SIKFHNSG----------LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNR  248 (481)
T ss_pred             ccceeeeccccccee-eEEecccc----------ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccc
Confidence            346777889999655 99999999          7999999999999998      332111111111000         


Q ss_pred             ----ccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCC
Q 008363          154 ----KEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADT  229 (568)
Q Consensus       154 ----~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~  229 (568)
                          ...++...+++     .+..+.+|...| .+.+|-  ..|+.+++++.|.+..+||+.++      .++..+.+|.
T Consensus       249 d~d~~~~sD~~tiRv-----Pl~~ltgH~~vV-~a~dWL--~gg~Q~vTaSWDRTAnlwDVEtg------e~v~~LtGHd  314 (481)
T KOG0300|consen  249 DTDSSEKSDGHTIRV-----PLMRLTGHRAVV-SACDWL--AGGQQMVTASWDRTANLWDVETG------EVVNILTGHD  314 (481)
T ss_pred             ccccccccCCceeee-----eeeeeeccccce-Eehhhh--cCcceeeeeeccccceeeeeccC------ceeccccCcc
Confidence                01122222222     233448999999 999999  78999999999999999999988      8899999999


Q ss_pred             CCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363          230 LPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK  308 (568)
Q Consensus       230 ~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~  308 (568)
                      ...+.+.-+|..      .++++.+.|. .++||++..-..+..|++|...|+++.|.-+.+ +++|++|.+|++||+++
T Consensus       315 ~ELtHcstHptQ------rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrN  387 (481)
T KOG0300|consen  315 SELTHCSTHPTQ------RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRN  387 (481)
T ss_pred             hhccccccCCcc------eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeecc
Confidence            999999999998      8999999998 999999976677789999999999999997655 89999999999999998


Q ss_pred             cccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcce---eeeec
Q 008363          309 AAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMH---FLCGS  385 (568)
Q Consensus       309 ~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~---~~~~s  385 (568)
                      +.               .++.++. ...+++.++++..+..|+.--.+..|++||++..++.+.+...+..|   ..|.+
T Consensus       388 MR---------------splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~A  451 (481)
T KOG0300|consen  388 MR---------------SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCA  451 (481)
T ss_pred             cc---------------Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeee
Confidence            76               4456665 45688999999888899999999999999999888777664444433   23444


Q ss_pred             ccC
Q 008363          386 VTE  388 (568)
Q Consensus       386 ~~~  388 (568)
                      +.+
T Consensus       452 W~e  454 (481)
T KOG0300|consen  452 WLE  454 (481)
T ss_pred             ccc
Confidence            444

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=3.1e-24  Score=217.47  Aligned_cols=232  Identities=18%  Similarity=0.248  Sum_probs=196.0

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      +.+|.. .+.++..-..+          ..+++|+.|..+-||.+....++..+                          
T Consensus        24 ~~~hsa-av~~lk~~~s~----------r~~~~Gg~~~k~~L~~i~kp~~i~S~--------------------------   66 (825)
T KOG0267|consen   24 FVAHSA-AVGCLKIRKSS----------RSLVTGGEDEKVNLWAIGKPNAITSL--------------------------   66 (825)
T ss_pred             hhhhhh-hhceeeeeccc----------eeeccCCCceeeccccccCCchhhee--------------------------
Confidence            356666 44466664455          78999999999999999887666555                          


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG  254 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s  254 (568)
                      .+|...| -+|.|+  .+..+|++|+.+|+|++||+...      +.++++.+|...+.+|.|+|.+      .++|+|+
T Consensus        67 ~~hespI-eSl~f~--~~E~LlaagsasgtiK~wDleeA------k~vrtLtgh~~~~~sv~f~P~~------~~~a~gS  131 (825)
T KOG0267|consen   67 TGHESPI-ESLTFD--TSERLLAAGSASGTIKVWDLEEA------KIVRTLTGHLLNITSVDFHPYG------EFFASGS  131 (825)
T ss_pred             eccCCcc-eeeecC--cchhhhcccccCCceeeeehhhh------hhhhhhhccccCcceeeeccce------EEecccc
Confidence            8899999 999998  77789999999999999999976      8888999999999999999999      8999999


Q ss_pred             CCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec
Q 008363          255 HGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC  333 (568)
Q Consensus       255 ~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~  333 (568)
                      .|+ +++||++.. .|.+.+.+|...+.++.|+|+|++++.+++|.+++|||+.        .|+..        ..|..
T Consensus       132 tdtd~~iwD~Rk~-Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~--------agk~~--------~ef~~  194 (825)
T KOG0267|consen  132 TDTDLKIWDIRKK-GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT--------AGKLS--------KEFKS  194 (825)
T ss_pred             ccccceehhhhcc-CceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccc--------ccccc--------ccccc
Confidence            999 999999965 7888999999999999999999999999999999999994        36554        58999


Q ss_pred             CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEc
Q 008363          334 SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVN  396 (568)
Q Consensus       334 h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~  396 (568)
                      |++.|..+.|+|..-++++||.|++|++||+++..+..... .......|..+.+++..+..|
T Consensus       195 ~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~-~~~~~v~~~~fn~~~~~~~~G  256 (825)
T KOG0267|consen  195 HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK-PETDGVRSLAFNPDGKIVLSG  256 (825)
T ss_pred             ccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC-CccCCceeeeecCCceeeecC
Confidence            99999999999999999999999999999998765544322 224455666777766655544

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=3.7e-22  Score=183.72  Aligned_cols=230  Identities=19%  Similarity=0.355  Sum_probs=170.2

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC-CceeeEEeccCCccCCCCceEEEeecceecccccCCcCc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQS  180 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~  180 (568)
                      .|.+|+|||...         .+|++++.||+||+|+++. +.....                         ....|.++
T Consensus        29 sIS~l~FSP~~~---------~~~~A~SWD~tVR~wevq~~g~~~~k-------------------------a~~~~~~P   74 (347)
T KOG0647|consen   29 SISALAFSPQAD---------NLLAAGSWDGTVRIWEVQNSGQLVPK-------------------------AQQSHDGP   74 (347)
T ss_pred             chheeEeccccC---------ceEEecccCCceEEEEEecCCcccch-------------------------hhhccCCC
Confidence            566999999553         6888999999999999987 333211                         11678899


Q ss_pred             cceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EE
Q 008363          181 IPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LK  259 (568)
Q Consensus       181 V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~  259 (568)
                      | ++++|+  .+|..+++|+.|+.+++||+.++       .+..+..|.++|.++.|-+..    ....|+|||.|+ |+
T Consensus        75 v-L~v~Ws--ddgskVf~g~~Dk~~k~wDL~S~-------Q~~~v~~Hd~pvkt~~wv~~~----~~~cl~TGSWDKTlK  140 (347)
T KOG0647|consen   75 V-LDVCWS--DDGSKVFSGGCDKQAKLWDLASG-------QVSQVAAHDAPVKTCHWVPGM----NYQCLVTGSWDKTLK  140 (347)
T ss_pred             e-EEEEEc--cCCceEEeeccCCceEEEEccCC-------CeeeeeecccceeEEEEecCC----CcceeEeccccccee
Confidence            9 999999  99999999999999999999976       456677999999999998876    234899999999 99


Q ss_pred             EEECCCCCcceeeeC-----------------------------------------CCCCCeEEEEEcCCCCEEEEEeCC
Q 008363          260 FWDIRDPFRPLWDIH-----------------------------------------PAPKFIYGLDWLPDPGCVILSFDD  298 (568)
Q Consensus       260 lwD~~~~~~~~~~~~-----------------------------------------~h~~~i~~l~~sp~~~~l~s~~~d  298 (568)
                      +||+|.. .++.++.                                         ...-.+.||+..++....+.|+-+
T Consensus       141 fWD~R~~-~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE  219 (347)
T KOG0647|consen  141 FWDTRSS-NPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE  219 (347)
T ss_pred             ecccCCC-CeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence            9999976 4443331                                         011234566666666666777777


Q ss_pred             CcEEEEEccccccCCCCCCCCccCccccceEEEecCC---------CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363          299 GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS---------FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV  369 (568)
Q Consensus       299 g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~---------~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~  369 (568)
                      |.+.+..+...        .+      ..-.+|++|+         .+|++|+|+|....|+|+|.||++.+||-....-
T Consensus       220 Grv~iq~id~~--------~~------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~k  285 (347)
T KOG0647|consen  220 GRVAIQYIDDP--------NP------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTK  285 (347)
T ss_pred             ceEEEEecCCC--------Cc------cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhh
Confidence            77777666431        11      1113666776         2578899999999999999999999999876544


Q ss_pred             eccCCCCCcceeeeecccCCCCceEE
Q 008363          370 EKDHSRNRPMHFLCGSVTEDESAITV  395 (568)
Q Consensus       370 ~~~~~~~~~~~~~~~s~~~~~~~i~~  395 (568)
                      .+....... .+.|.++..+|..++-
T Consensus       286 Lk~s~~~~q-pItcc~fn~~G~ifaY  310 (347)
T KOG0647|consen  286 LKTSETHPQ-PITCCSFNRNGSIFAY  310 (347)
T ss_pred             hhccCcCCC-ccceeEecCCCCEEEE
Confidence            444333333 3456678888877654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.90  E-value=3.7e-23  Score=185.31  Aligned_cols=232  Identities=17%  Similarity=0.220  Sum_probs=186.7

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-------------ccCC
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-------------KEGT  157 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-------------~~~~  157 (568)
                      -+-.+.+|.+ .||......+.          ..-|+++.|-+-+|||.-+|..+..+....-             +.|+
T Consensus        51 wigtfeghkg-avw~~~l~~na----------~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg  119 (334)
T KOG0278|consen   51 WIGTFEGHKG-AVWSATLNKNA----------TRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGG  119 (334)
T ss_pred             cEEeeeccCc-ceeeeecCchh----------hhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccc
Confidence            4667899999 88899998887          6889999999999999999887766532111             5566


Q ss_pred             CCceEEEeecce---ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeE
Q 008363          158 DPRFVKLEPVFR---CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRA  234 (568)
Q Consensus       158 ~~~~v~~~~~~~---~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~  234 (568)
                      ....+++.+..+   ......+|++.| ..+-|.  .....|++++.|++||+||.+++      ..++.+. ...+|++
T Consensus       120 ~ekllrvfdln~p~App~E~~ghtg~I-r~v~wc--~eD~~iLSSadd~tVRLWD~rTg------t~v~sL~-~~s~VtS  189 (334)
T KOG0278|consen  120 QEKLLRVFDLNRPKAPPKEISGHTGGI-RTVLWC--HEDKCILSSADDKTVRLWDHRTG------TEVQSLE-FNSPVTS  189 (334)
T ss_pred             hHHHhhhhhccCCCCCchhhcCCCCcc-eeEEEe--ccCceEEeeccCCceEEEEeccC------cEEEEEe-cCCCCcc
Confidence            777777766555   334557999999 999998  66678999999999999999988      6666663 3677999


Q ss_pred             EEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCC
Q 008363          235 VSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVP  314 (568)
Q Consensus       235 v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~  314 (568)
                      +..+++|      .+|.++...+|.+||..+- ..+..+. -+..|.+...+|+...+++|+.|..++.||..       
T Consensus       190 lEvs~dG------~ilTia~gssV~Fwdaksf-~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~-------  254 (334)
T KOG0278|consen  190 LEVSQDG------RILTIAYGSSVKFWDAKSF-GLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYN-------  254 (334)
T ss_pred             eeeccCC------CEEEEecCceeEEeccccc-cceeecc-CccccccccccCCCceEEecCcceEEEEEecc-------
Confidence            9999998      5555554445999999865 5555442 35668999999999999999999999999994       


Q ss_pred             CCCCCccCccccceEEE-ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363          315 ATGKPFAGTKQQGLHLV-NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       315 ~~g~~~~~~~~~~l~~~-~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~  367 (568)
                       +|+.+        ..+ .+|.++|.||.|+|+|...++||.||+|++|....+
T Consensus       255 -TgeEi--------~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~  299 (334)
T KOG0278|consen  255 -TGEEI--------GSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG  299 (334)
T ss_pred             -CCcee--------eecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence             56554        343 899999999999999999999999999999998543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.90  E-value=2.6e-22  Score=181.17  Aligned_cols=210  Identities=16%  Similarity=0.237  Sum_probs=172.3

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      ..+|.. .+.+|+|+-+|          ..|++|+.|+++.+|++........+                        ..
T Consensus        16 ~~~~~~-~v~Sv~wn~~g----------~~lasgs~dktv~v~n~e~~r~~~~~------------------------~~   60 (313)
T KOG1407|consen   16 LQGHVQ-KVHSVAWNCDG----------TKLASGSFDKTVSVWNLERDRFRKEL------------------------VY   60 (313)
T ss_pred             hhhhhh-cceEEEEcccC----------ceeeecccCCceEEEEecchhhhhhh------------------------cc
Confidence            356777 45599999999          89999999999999999986444332                        12


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG  254 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s  254 (568)
                      .+|...| -.+.|.|.. .++|++++.|.+|++||++.+      ++........+. .-+.|+|+|      .+++.++
T Consensus        61 ~gh~~sv-dql~w~~~~-~d~~atas~dk~ir~wd~r~~------k~~~~i~~~~en-i~i~wsp~g------~~~~~~~  125 (313)
T KOG1407|consen   61 RGHTDSV-DQLCWDPKH-PDLFATASGDKTIRIWDIRSG------KCTARIETKGEN-INITWSPDG------EYIAVGN  125 (313)
T ss_pred             cCCCcch-hhheeCCCC-CcceEEecCCceEEEEEeccC------cEEEEeeccCcc-eEEEEcCCC------CEEEEec
Confidence            7899998 899999763 369999999999999999977      777766443333 457889988      7888888


Q ss_pred             CCC-EEEEECCCC----------------------------------------CcceeeeCCCCCCeEEEEEcCCCCEEE
Q 008363          255 HGG-LKFWDIRDP----------------------------------------FRPLWDIHPAPKFIYGLDWLPDPGCVI  293 (568)
Q Consensus       255 ~d~-v~lwD~~~~----------------------------------------~~~~~~~~~h~~~i~~l~~sp~~~~l~  293 (568)
                      .|- |.+.|.++.                                        .+++..+..|+....||.|+|+|++++
T Consensus       126 kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA  205 (313)
T KOG1407|consen  126 KDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFA  205 (313)
T ss_pred             CcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEe
Confidence            776 888887653                                        144555678999999999999999999


Q ss_pred             EEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee
Q 008363          294 LSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE  370 (568)
Q Consensus       294 s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~  370 (568)
                      +|+.|-.+-|||+..                +.|++.+..+.-+|..+.|+-+|++||++|.|..|-|=++++|...
T Consensus       206 ~GsADAlvSLWD~~E----------------LiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~  266 (313)
T KOG1407|consen  206 TGSADALVSLWDVDE----------------LICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRV  266 (313)
T ss_pred             eccccceeeccChhH----------------hhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeE
Confidence            999999999999943                2577899999999999999999999999999999999888877543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.90  E-value=3.5e-22  Score=209.54  Aligned_cols=230  Identities=17%  Similarity=0.242  Sum_probs=198.5

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeE-EeccCC--------------ccCCCCc
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKA-IYLSSM--------------KEGTDPR  160 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~-l~~~~~--------------~~~~~~~  160 (568)
                      .+|....+.+..|. +           +++++++.|++|++|+..++..+.. +.+|..              ++|+.|.
T Consensus       204 ~~~~~~~~~~~q~~-~-----------~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~  271 (537)
T KOG0274|consen  204 LGTDDHVVLCLQLH-D-----------GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDK  271 (537)
T ss_pred             cccCcchhhhheee-c-----------CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCC
Confidence            33444355477777 3           4899999999999999999888887 888876              6789999


Q ss_pred             eEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEc
Q 008363          161 FVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWA  238 (568)
Q Consensus       161 ~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~  238 (568)
                      .+++|+..+  |...+.||...| .++...    ..++++|+.|.+|++|++.++      .++..+.+|.++|++|..+
T Consensus       272 t~rvWd~~sg~C~~~l~gh~stv-~~~~~~----~~~~~sgs~D~tVkVW~v~n~------~~l~l~~~h~~~V~~v~~~  340 (537)
T KOG0274|consen  272 TERVWDCSTGECTHSLQGHTSSV-RCLTID----PFLLVSGSRDNTVKVWDVTNG------ACLNLLRGHTGPVNCVQLD  340 (537)
T ss_pred             cEEeEecCCCcEEEEecCCCceE-EEEEcc----CceEeeccCCceEEEEeccCc------ceEEEeccccccEEEEEec
Confidence            999999777  888999999999 999854    558999999999999999977      8999999999999999998


Q ss_pred             cCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCC
Q 008363          239 PAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATG  317 (568)
Q Consensus       239 p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g  317 (568)
                        +      .++++|+.|+ |++||+.+. +++..+.+|...|+++.+.+. ..+++|+.|++|++||++...       
T Consensus       341 --~------~~lvsgs~d~~v~VW~~~~~-~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~-------  403 (537)
T KOG0274|consen  341 --E------PLLVSGSYDGTVKVWDPRTG-KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR-------  403 (537)
T ss_pred             --C------CEEEEEecCceEEEEEhhhc-eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh-------
Confidence              4      6999999999 999999976 999999999999999988865 889999999999999996521       


Q ss_pred             CCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCC
Q 008363          318 KPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSR  375 (568)
Q Consensus       318 ~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~  375 (568)
                              +|+.++.+|...|..+.+  .+++|++++.|++|++||..++...+....
T Consensus       404 --------~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~  451 (537)
T KOG0274|consen  404 --------KCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG  451 (537)
T ss_pred             --------hhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeecc
Confidence                    466899999999977665  678999999999999999998887766444

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.90  E-value=2.7e-23  Score=198.41  Aligned_cols=253  Identities=18%  Similarity=0.180  Sum_probs=198.4

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc--eeeEEeccCC--------------ccCCC
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR--TMKAIYLSSM--------------KEGTD  158 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~--~~~~l~~~~~--------------~~~~~  158 (568)
                      ...|.+++- ++.|.++.          ..|++|+.|..|++|++...+  .+.+|.+...              +..+.
T Consensus       171 ld~h~gev~-~v~~l~~s----------dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~  239 (459)
T KOG0288|consen  171 LDAHEGEVH-DVEFLRNS----------DTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASN  239 (459)
T ss_pred             hhccccccc-eeEEccCc----------chhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecC
Confidence            457888665 99999997          699999999999999998755  4555555422              56788


Q ss_pred             CceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEE
Q 008363          159 PRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVS  236 (568)
Q Consensus       159 ~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~  236 (568)
                      +..+++|++..  ...++.||+..| +++.|.  .....+++|+.|.+|++||+...      .|..++.. .+.+.+|.
T Consensus       240 d~~~r~Wnvd~~r~~~TLsGHtdkV-t~ak~~--~~~~~vVsgs~DRtiK~WDl~k~------~C~kt~l~-~S~cnDI~  309 (459)
T KOG0288|consen  240 DKNLRLWNVDSLRLRHTLSGHTDKV-TAAKFK--LSHSRVVSGSADRTIKLWDLQKA------YCSKTVLP-GSQCNDIV  309 (459)
T ss_pred             CCceeeeeccchhhhhhhcccccce-eeehhh--ccccceeeccccchhhhhhhhhh------heeccccc-cccccceE
Confidence            88999999877  566788999999 999988  44445999999999999999966      66665532 44577777


Q ss_pred             EccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCC
Q 008363          237 WAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPA  315 (568)
Q Consensus       237 ~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~  315 (568)
                      .+  .      ..++||..|+ |++||+++. .++.....+. .|+++..++++..|++++.|.++.+.|+|...     
T Consensus       310 ~~--~------~~~~SgH~DkkvRfwD~Rs~-~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e-----  374 (459)
T KOG0288|consen  310 CS--I------SDVISGHFDKKVRFWDIRSA-DKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE-----  374 (459)
T ss_pred             ec--c------eeeeecccccceEEEeccCC-ceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeeccccc-----
Confidence            66  3      5899999998 999999988 7776665544 89999999999999999999999999997632     


Q ss_pred             CCCCccCccccceEEEec----CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcc-eeeeecccCCC
Q 008363          316 TGKPFAGTKQQGLHLVNC----SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPM-HFLCGSVTEDE  390 (568)
Q Consensus       316 ~g~~~~~~~~~~l~~~~~----h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~s~~~~~  390 (568)
                         .        .+.+..    .....+.+.|||++.|+++||.||.|+||++.+++++........+ .+.|.++.+.|
T Consensus       375 ---I--------~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG  443 (459)
T KOG0288|consen  375 ---I--------RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSG  443 (459)
T ss_pred             ---E--------EEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCC
Confidence               1        122221    1123788999999999999999999999999999999875544433 56666777666


Q ss_pred             CceE
Q 008363          391 SAIT  394 (568)
Q Consensus       391 ~~i~  394 (568)
                      ..+.
T Consensus       444 ~~Ll  447 (459)
T KOG0288|consen  444 SGLL  447 (459)
T ss_pred             chhh
Confidence            5543

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.90  E-value=5.7e-22  Score=201.88  Aligned_cols=181  Identities=17%  Similarity=0.224  Sum_probs=159.9

Q ss_pred             ccCCCCceEEEeecceecc--------------cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCC
Q 008363          154 KEGTDPRFVKLEPVFRCSM--------------LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDS  219 (568)
Q Consensus       154 ~~~~~~~~v~~~~~~~~~~--------------~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~  219 (568)
                      +.++.|.++++|+......              ....-...| .|+.++  |||.+||++--|.+|+||-+.+-      
T Consensus       470 vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddv-L~v~~S--pdgk~LaVsLLdnTVkVyflDtl------  540 (888)
T KOG0306|consen  470 VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDV-LCVSVS--PDGKLLAVSLLDNTVKVYFLDTL------  540 (888)
T ss_pred             EEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccE-EEEEEc--CCCcEEEEEeccCeEEEEEecce------
Confidence            6788999999998654211              111234667 899988  99999999999999999999966      


Q ss_pred             ceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCC
Q 008363          220 RPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDD  298 (568)
Q Consensus       220 ~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d  298 (568)
                      +....+.||.-||.||..+|++      ++++|||.|. |++|-+.-+ .|-..+.+|.+.|+++.|.|....++++|.|
T Consensus       541 KFflsLYGHkLPV~smDIS~DS------klivTgSADKnVKiWGLdFG-DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD  613 (888)
T KOG0306|consen  541 KFFLSLYGHKLPVLSMDISPDS------KLIVTGSADKNVKIWGLDFG-DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKD  613 (888)
T ss_pred             eeeeeecccccceeEEeccCCc------CeEEeccCCCceEEeccccc-hhhhhhhcccCceeEEEEcccceeEEEecCc
Confidence            7788899999999999999999      8999999999 999999877 8888999999999999999999999999999


Q ss_pred             CcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          299 GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       299 g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                      +.|+-||-.++                ..++.+.+|...||+++.+|+|.+++++|.|.+|++|.-..
T Consensus       614 ~kvKqWDg~kF----------------e~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  614 GKVKQWDGEKF----------------EEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             ceEEeechhhh----------------hhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            99999998553                45679999999999999999999999999999999998765

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=3.5e-22  Score=194.87  Aligned_cols=206  Identities=17%  Similarity=0.226  Sum_probs=173.1

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS  171 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~  171 (568)
                      +..+.+|+. .++.+.|+|++.         ..|++|++|+.+++||+.+......+                       
T Consensus       103 LR~~~ah~a-pv~~~~f~~~d~---------t~l~s~sDd~v~k~~d~s~a~v~~~l-----------------------  149 (487)
T KOG0310|consen  103 LRQLYAHQA-PVHVTKFSPQDN---------TMLVSGSDDKVVKYWDLSTAYVQAEL-----------------------  149 (487)
T ss_pred             HHHHhhccC-ceeEEEecccCC---------eEEEecCCCceEEEEEcCCcEEEEEe-----------------------
Confidence            344668988 677999999886         78999999999999999996643344                       


Q ss_pred             ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363          172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la  251 (568)
                         .+|+..| .|.+|+|..+ .++++|++||+|++||++..     ...+..+ .|..+|..+.|-|.|      .+||
T Consensus       150 ---~~htDYV-R~g~~~~~~~-hivvtGsYDg~vrl~DtR~~-----~~~v~el-nhg~pVe~vl~lpsg------s~ia  212 (487)
T KOG0310|consen  150 ---SGHTDYV-RCGDISPAND-HIVVTGSYDGKVRLWDTRSL-----TSRVVEL-NHGCPVESVLALPSG------SLIA  212 (487)
T ss_pred             ---cCCccee-EeeccccCCC-eEEEecCCCceEEEEEeccC-----CceeEEe-cCCCceeeEEEcCCC------CEEE
Confidence               8999999 9999996644 58999999999999999966     2455555 789999999999998      7999


Q ss_pred             EEcCCCEEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363          252 TAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV  331 (568)
Q Consensus       252 s~s~d~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~  331 (568)
                      +++...|++||+-++.+.+..+..|...|+|+++..++..|++++-|+.|++||+.+.                +-++.+
T Consensus       213 sAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~----------------Kvv~s~  276 (487)
T KOG0310|consen  213 SAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY----------------KVVHSW  276 (487)
T ss_pred             EcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce----------------EEEEee
Confidence            9998889999999876666666679999999999999999999999999999998442                223343


Q ss_pred             ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          332 NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       332 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                      . -.++|.+++.+|++..++.|..||.+.+-..
T Consensus       277 ~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~  308 (487)
T KOG0310|consen  277 K-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR  308 (487)
T ss_pred             e-cccceeeEEecCCCceEEEecccceeeeehh
Confidence            3 5689999999999999999999999887643

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1.2e-22  Score=181.69  Aligned_cols=246  Identities=16%  Similarity=0.184  Sum_probs=186.7

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc---eeeEEeccCCccCCCCceEEEeecceecc
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR---TMKAIYLSSMKEGTDPRFVKLEPVFRCSM  172 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~---~~~~l~~~~~~~~~~~~~v~~~~~~~~~~  172 (568)
                      ..|.. .|+++...-.|          ..||||+.|++|+|+.+....   .+.+|                        
T Consensus         8 t~H~D-~IHda~lDyyg----------krlATcsSD~tVkIf~v~~n~~s~ll~~L------------------------   52 (299)
T KOG1332|consen    8 TQHED-MIHDAQLDYYG----------KRLATCSSDGTVKIFEVRNNGQSKLLAEL------------------------   52 (299)
T ss_pred             hhhhh-hhhHhhhhhhc----------ceeeeecCCccEEEEEEcCCCCceeeeEe------------------------
Confidence            45666 66677766677          899999999999999998733   33333                        


Q ss_pred             cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363          173 LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILT  252 (568)
Q Consensus       173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las  252 (568)
                        .||.++| +.++|.--.-|.+||++++||.|.||.-..+.+    .....+..|.+.|++|+|.|.+    ..-+||+
T Consensus        53 --~Gh~GPV-wqv~wahPk~G~iLAScsYDgkVIiWke~~g~w----~k~~e~~~h~~SVNsV~waphe----ygl~Lac  121 (299)
T KOG1332|consen   53 --TGHSGPV-WKVAWAHPKFGTILASCSYDGKVIIWKEENGRW----TKAYEHAAHSASVNSVAWAPHE----YGLLLAC  121 (299)
T ss_pred             --cCCCCCe-eEEeecccccCcEeeEeecCceEEEEecCCCch----hhhhhhhhhcccceeecccccc----cceEEEE
Confidence              8999999 999997333688999999999999999887744    6677888999999999999987    4578999


Q ss_pred             EcCCC-EEEEECCCCC--cceeeeCCCCCCeEEEEEcCC---C-----------CEEEEEeCCCcEEEEEccccccCCCC
Q 008363          253 AGHGG-LKFWDIRDPF--RPLWDIHPAPKFIYGLDWLPD---P-----------GCVILSFDDGAMRIVSLLKAAYDVPA  315 (568)
Q Consensus       253 ~s~d~-v~lwD~~~~~--~~~~~~~~h~~~i~~l~~sp~---~-----------~~l~s~~~dg~I~lwd~~~~~~~~~~  315 (568)
                      ++.|| |.|.+.+...  ..-.....|.-.|++++|.|-   |           +.|++|+.|+.|+||+..+       
T Consensus       122 asSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~-------  194 (299)
T KOG1332|consen  122 ASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDS-------  194 (299)
T ss_pred             eeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCC-------
Confidence            99999 9999888652  222445689999999999996   4           5699999999999999854       


Q ss_pred             CCCCccCccccceEEEecCCCCEEEEEEecCC----CEEEEEeCCCeEEEEEcCCC--eeeccCCCCCcce-eeeecccC
Q 008363          316 TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT----GMVAYCSADGTVHRFQLTAK--AVEKDHSRNRPMH-FLCGSVTE  388 (568)
Q Consensus       316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~----~~l~s~s~Dg~v~iwd~~~~--~~~~~~~~~~~~~-~~~~s~~~  388 (568)
                       ++-      ..-.++.+|.+-|+.++|.|.-    .+||+||.||+|.||-....  ..+.... +..|. .--.+++.
T Consensus       195 -~~w------~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll-~~f~~~~w~vSWS~  266 (299)
T KOG1332|consen  195 -DSW------KLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLL-EEFPDVVWRVSWSL  266 (299)
T ss_pred             -cch------hhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccc-ccCCcceEEEEEec
Confidence             221      1113589999999999999983    68999999999999987521  1111111 11111 22337778


Q ss_pred             CCCceEEcccCCCC
Q 008363          389 DESAITVNTPLDNT  402 (568)
Q Consensus       389 ~~~~i~~~~~~~~~  402 (568)
                      .|+.|++.--...+
T Consensus       267 sGn~LaVs~GdNkv  280 (299)
T KOG1332|consen  267 SGNILAVSGGDNKV  280 (299)
T ss_pred             cccEEEEecCCcEE
Confidence            88887775444444

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=1.4e-21  Score=180.60  Aligned_cols=237  Identities=17%  Similarity=0.239  Sum_probs=179.7

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      -|.+|.|+|.+          +.|++++.||++++|++........                           ..|..++
T Consensus        15 ~IS~v~f~~~~----------~~LLvssWDgslrlYdv~~~~l~~~---------------------------~~~~~pl   57 (323)
T KOG1036|consen   15 GISSVKFSPSS----------SDLLVSSWDGSLRLYDVPANSLKLK---------------------------FKHGAPL   57 (323)
T ss_pred             ceeeEEEcCcC----------CcEEEEeccCcEEEEeccchhhhhh---------------------------eecCCce
Confidence            45599999988          6888889999999999998644332                           5678888


Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF  260 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l  260 (568)
                       ++++|.  + ...+++|+.||.|+.+|+.++       ....+..|..+|.+|.+++..      ..+++||.|+ |++
T Consensus        58 -L~c~F~--d-~~~~~~G~~dg~vr~~Dln~~-------~~~~igth~~~i~ci~~~~~~------~~vIsgsWD~~ik~  120 (323)
T KOG1036|consen   58 -LDCAFA--D-ESTIVTGGLDGQVRRYDLNTG-------NEDQIGTHDEGIRCIEYSYEV------GCVISGSWDKTIKF  120 (323)
T ss_pred             -eeeecc--C-CceEEEeccCceEEEEEecCC-------cceeeccCCCceEEEEeeccC------CeEEEcccCccEEE
Confidence             999988  4 469999999999999999976       334566899999999999887      7999999999 999


Q ss_pred             EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCcc-------------------
Q 008363          261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFA-------------------  321 (568)
Q Consensus       261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~-------------------  321 (568)
                      ||.|.. .+...+. ....|.++..+  +..|++|+.|..|.+||+|++..+.......++                   
T Consensus       121 wD~R~~-~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS  196 (323)
T KOG1036|consen  121 WDPRNK-VVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS  196 (323)
T ss_pred             Eecccc-ccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe
Confidence            999974 4444443 34478888877  888999999999999999988654311111110                   


Q ss_pred             ----------C---ccccceEEEecCC---------CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcc
Q 008363          322 ----------G---TKQQGLHLVNCSS---------FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPM  379 (568)
Q Consensus       322 ----------~---~~~~~l~~~~~h~---------~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~  379 (568)
                                .   ..+..-..|++|.         .+|++|+|+|-.+.|+||+.||.|.+||+.+.+-.....+. ..
T Consensus       197 ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~-~~  275 (323)
T KOG1036|consen  197 IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY-ET  275 (323)
T ss_pred             ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC-CC
Confidence                      0   0001112455665         37999999999999999999999999999876544443322 12


Q ss_pred             eeeeecccCCCCceEEcc
Q 008363          380 HFLCGSVTEDESAITVNT  397 (568)
Q Consensus       380 ~~~~~s~~~~~~~i~~~~  397 (568)
                      .+...+++.+|+.+++++
T Consensus       276 SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  276 SISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             ceEEEEeccCCCeEEEEe
Confidence            244558899999998864

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=1.7e-22  Score=186.57  Aligned_cols=210  Identities=18%  Similarity=0.233  Sum_probs=182.1

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      +.+|.. -||.++-....          .++.+++.|.+.+||.++++.|+..+                          
T Consensus       144 ~~GHkD-GiW~Vaa~~tq----------pi~gtASADhTA~iWs~Esg~CL~~Y--------------------------  186 (481)
T KOG0300|consen  144 LEGHKD-GIWHVAADSTQ----------PICGTASADHTARIWSLESGACLATY--------------------------  186 (481)
T ss_pred             hccccc-ceeeehhhcCC----------cceeecccccceeEEeeccccceeee--------------------------
Confidence            568988 56788887766          59999999999999999999999887                          


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEc------cCCC-----C-------------------C----CCCc
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKF------VASD-----S-------------------S----IDSR  220 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~------~~~~-----~-------------------~----~~~~  220 (568)
                      .||.+.| .++.|+  +.+.++++++.|++..||..      ....     .                   .    ....
T Consensus       187 ~GH~GSV-Nsikfh--~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRv  263 (481)
T KOG0300|consen  187 TGHTGSV-NSIKFH--NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRV  263 (481)
T ss_pred             cccccce-eeEEec--cccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeee
Confidence            8999999 999999  78899999999999999972      1100     0                   0    1123


Q ss_pred             eeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 008363          221 PLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDG  299 (568)
Q Consensus       221 ~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg  299 (568)
                      ++..+.+|.+.|.+..|...+      ..+++++.|. ..+||+.++ .++..+.+|....+.++-+|..+++++++.|.
T Consensus       264 Pl~~ltgH~~vV~a~dWL~gg------~Q~vTaSWDRTAnlwDVEtg-e~v~~LtGHd~ELtHcstHptQrLVvTsSrDt  336 (481)
T KOG0300|consen  264 PLMRLTGHRAVVSACDWLAGG------QQMVTASWDRTANLWDVETG-EVVNILTGHDSELTHCSTHPTQRLVVTSSRDT  336 (481)
T ss_pred             eeeeeeccccceEehhhhcCc------ceeeeeeccccceeeeeccC-ceeccccCcchhccccccCCcceEEEEeccCc
Confidence            677889999999999999998      8999999998 999999998 88999999999999999999999999999999


Q ss_pred             cEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363          300 AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       300 ~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~  367 (568)
                      +.++||+|..-               +.+..|+||...|+++.|..+. .+++|+.|.+|++||+.+.
T Consensus       337 TFRLWDFReaI---------------~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNM  388 (481)
T KOG0300|consen  337 TFRLWDFREAI---------------QSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNM  388 (481)
T ss_pred             eeEeccchhhc---------------ceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccc
Confidence            99999997422               5667999999999999998754 5899999999999999654

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.89  E-value=4.5e-22  Score=201.25  Aligned_cols=223  Identities=19%  Similarity=0.287  Sum_probs=192.7

Q ss_pred             EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-------------ccCCCCc
Q 008363           94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-------------KEGTDPR  160 (568)
Q Consensus        94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-------------~~~~~~~  160 (568)
                      .+.+|.+=+...++|-+...         ..|++|+.|+.|.+|.......+.+|.+|..             ++++-|.
T Consensus        52 ~~~~~~g~i~~~i~y~e~~~---------~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~  122 (745)
T KOG0301|consen   52 AFEGPKGFIANSICYAESDK---------GRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDS  122 (745)
T ss_pred             ecccCcceeeccceeccccC---------cceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEeccccc
Confidence            34567773443378876332         4799999999999999999999999999877             6889999


Q ss_pred             eEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC
Q 008363          161 FVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA  240 (568)
Q Consensus       161 ~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~  240 (568)
                      ++++|+...|...+.+|+..| +++..-  |++ .++|||.|.+|++|.-.        +.+++|.+|+..|+.+++-++
T Consensus       123 TakvW~~~~l~~~l~gH~asV-WAv~~l--~e~-~~vTgsaDKtIklWk~~--------~~l~tf~gHtD~VRgL~vl~~  190 (745)
T KOG0301|consen  123 TAKVWRIGELVYSLQGHTASV-WAVASL--PEN-TYVTGSADKTIKLWKGG--------TLLKTFSGHTDCVRGLAVLDD  190 (745)
T ss_pred             ceEEecchhhhcccCCcchhe-eeeeec--CCC-cEEeccCcceeeeccCC--------chhhhhccchhheeeeEEecC
Confidence            999999999999999999999 999977  665 99999999999999854        788999999999999999999


Q ss_pred             CCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCC
Q 008363          241 ESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKP  319 (568)
Q Consensus       241 ~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~  319 (568)
                      +       -|+||+.|| |++|++. + .++..+.+|+..|+++...+++..++++++|++++||+.          +  
T Consensus       191 ~-------~flScsNDg~Ir~w~~~-g-e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~----------~--  249 (745)
T KOG0301|consen  191 S-------HFLSCSNDGSIRLWDLD-G-EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKK----------D--  249 (745)
T ss_pred             C-------CeEeecCCceEEEEecc-C-ceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeec----------C--
Confidence            5       789999999 9999994 4 788889999999999998888899999999999999998          2  


Q ss_pred             ccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          320 FAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       320 ~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                            .+.+.+.-....||++.+-++|. |++|+.||.|+||...
T Consensus       250 ------e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  250 ------ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             ------ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence                  33456665566899999988776 7788889999999875

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=9.8e-22  Score=190.72  Aligned_cols=231  Identities=19%  Similarity=0.266  Sum_probs=185.2

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      ..--.| ++.+++-+|.|          .+|+.|+..|.|++|.+.+|..+..+                          
T Consensus        77 ~~v~Pg-~v~al~s~n~G----------~~l~ag~i~g~lYlWelssG~LL~v~--------------------------  119 (476)
T KOG0646|consen   77 YIVLPG-PVHALASSNLG----------YFLLAGTISGNLYLWELSSGILLNVL--------------------------  119 (476)
T ss_pred             hccccc-ceeeeecCCCc----------eEEEeecccCcEEEEEeccccHHHHH--------------------------
Confidence            334455 66699999999          78888889999999999999988776                          


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCC---CCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVAS---DSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~---~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la  251 (568)
                      ..|-..| +|+.|+  .||.+|++|+.||.|.+|.+..-   .......+++.|..|+-+|+++...+.+    ...+++
T Consensus       120 ~aHYQ~I-TcL~fs--~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg----~~~rl~  192 (476)
T KOG0646|consen  120 SAHYQSI-TCLKFS--DDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGG----TNARLY  192 (476)
T ss_pred             Hhhccce-eEEEEe--CCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCC----ccceEE
Confidence            7899999 999999  89999999999999999987421   1112457899999999999999998875    346899


Q ss_pred             EEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCC-CCCCCccCccccceE
Q 008363          252 TAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVP-ATGKPFAGTKQQGLH  329 (568)
Q Consensus       252 s~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~-~~g~~~~~~~~~~l~  329 (568)
                      |+|.|. +++||+..+ ..+.++ ..+..+++++.+|-++.+++|+.+|.|.+.++....-... +. +.........+.
T Consensus       193 TaS~D~t~k~wdlS~g-~LLlti-~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~-~k~~~~~~t~~~  269 (476)
T KOG0646|consen  193 TASEDRTIKLWDLSLG-VLLLTI-TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVN-QKGRHEENTQIN  269 (476)
T ss_pred             EecCCceEEEEEeccc-eeeEEE-ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccc-ccccccccceee
Confidence            999998 999999987 444443 2367799999999999999999999999998865431000 00 000011223456


Q ss_pred             EEecCCC--CEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          330 LVNCSSF--AIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       330 ~~~~h~~--~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                      .+.||.+  +|+|++++-||.+|++|+.||.|.|||+.+....+.
T Consensus       270 ~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt  314 (476)
T KOG0646|consen  270 VLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT  314 (476)
T ss_pred             eeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence            7889998  999999999999999999999999999987766654

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=9.4e-22  Score=175.94  Aligned_cols=223  Identities=20%  Similarity=0.343  Sum_probs=175.3

Q ss_pred             eEEEeeccCCceeeEEEEcc--CCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecc
Q 008363           91 RVVLCLAHNGKVAWDVKWKP--YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVF  168 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp--~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~  168 (568)
                      .+..+.+|.| ++|.++|-.  .|          .+||+++.||.|.||.-.+++-.+. +.                  
T Consensus        48 ll~~L~Gh~G-PVwqv~wahPk~G----------~iLAScsYDgkVIiWke~~g~w~k~-~e------------------   97 (299)
T KOG1332|consen   48 LLAELTGHSG-PVWKVAWAHPKFG----------TILASCSYDGKVIIWKEENGRWTKA-YE------------------   97 (299)
T ss_pred             eeeEecCCCC-CeeEEeecccccC----------cEeeEeecCceEEEEecCCCchhhh-hh------------------
Confidence            4556789999 888999976  55          8999999999999999988743322 11                  


Q ss_pred             eecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCC------
Q 008363          169 RCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAES------  242 (568)
Q Consensus       169 ~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~------  242 (568)
                           ...|...| .+|+|.|+.-|-.|++|+.||.|.|.+++....   ........+|.-.|+++.|.|..-      
T Consensus        98 -----~~~h~~SV-NsV~wapheygl~LacasSDG~vsvl~~~~~g~---w~t~ki~~aH~~GvnsVswapa~~~g~~~~  168 (299)
T KOG1332|consen   98 -----HAAHSASV-NSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG---WTTSKIVFAHEIGVNSVSWAPASAPGSLVD  168 (299)
T ss_pred             -----hhhhcccc-eeecccccccceEEEEeeCCCcEEEEEEcCCCC---ccchhhhhccccccceeeecCcCCCccccc
Confidence                 16899999 999999988888999999999999999986521   133445678999999999999731      


Q ss_pred             --CCCCCcEEEEEcCCC-EEEEECCCCCcce-eeeCCCCCCeEEEEEcCCC----CEEEEEeCCCcEEEEEccccccCCC
Q 008363          243 --DSDSANVILTAGHGG-LKFWDIRDPFRPL-WDIHPAPKFIYGLDWLPDP----GCVILSFDDGAMRIVSLLKAAYDVP  314 (568)
Q Consensus       243 --~~~~~~~las~s~d~-v~lwD~~~~~~~~-~~~~~h~~~i~~l~~sp~~----~~l~s~~~dg~I~lwd~~~~~~~~~  314 (568)
                        -....+.|+||+.|. |+||+..+..-.+ .++.+|.+.|..++|.|.-    .+|++++.||+|.||-.+.-.    
T Consensus       169 ~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~----  244 (299)
T KOG1332|consen  169 QGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY----  244 (299)
T ss_pred             cCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc----
Confidence              001236799999999 9999998764233 4588999999999999964    689999999999999886311    


Q ss_pred             CCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          315 ATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       315 ~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                         ++      .....+..-...++.+.||..|.+|+.++.|+.|.+|.-.
T Consensus       245 ---e~------wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  245 ---EP------WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             ---Cc------ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence               11      1112333355789999999999999999999999999754

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.88  E-value=2.3e-21  Score=186.33  Aligned_cols=197  Identities=16%  Similarity=0.193  Sum_probs=170.2

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT  184 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~  184 (568)
                      ++..+|..          ..+++|+.|..+.++|.+.++.+..+                          .||...| +.
T Consensus       224 ald~~~s~----------~~ilTGG~d~~av~~d~~s~q~l~~~--------------------------~Gh~kki-~~  266 (506)
T KOG0289|consen  224 ALDIIPSS----------SKILTGGEDKTAVLFDKPSNQILATL--------------------------KGHTKKI-TS  266 (506)
T ss_pred             EEeecCCC----------CcceecCCCCceEEEecchhhhhhhc--------------------------cCcceEE-EE
Confidence            67777775          68999999999999999998888776                          8999998 99


Q ss_pred             EEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEEC
Q 008363          185 MEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDI  263 (568)
Q Consensus       185 v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~  263 (568)
                      +.++  ++...+++++.|-.|+||.....      ........|..+|+.+..+|.|      .||++++.|+ ..+.|+
T Consensus       267 v~~~--~~~~~v~~aSad~~i~vws~~~~------s~~~~~~~h~~~V~~ls~h~tg------eYllsAs~d~~w~Fsd~  332 (506)
T KOG0289|consen  267 VKFH--KDLDTVITASADEIIRVWSVPLS------SEPTSSRPHEEPVTGLSLHPTG------EYLLSASNDGTWAFSDI  332 (506)
T ss_pred             EEec--cchhheeecCCcceEEeeccccc------cCccccccccccceeeeeccCC------cEEEEecCCceEEEEEc
Confidence            9988  77889999999999999998765      4556677899999999999999      9999999999 999999


Q ss_pred             CCCCcceeeeCC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEE
Q 008363          264 RDPFRPLWDIHP--APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSV  341 (568)
Q Consensus       264 ~~~~~~~~~~~~--h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l  341 (568)
                      +++ ..+.....  ..-.+++.+|+|||..+.+|..||.|+|||+..        +.        .+..|.+|+++|..+
T Consensus       333 ~~g-~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks--------~~--------~~a~Fpght~~vk~i  395 (506)
T KOG0289|consen  333 SSG-SQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS--------QT--------NVAKFPGHTGPVKAI  395 (506)
T ss_pred             cCC-cEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC--------cc--------ccccCCCCCCceeEE
Confidence            988 55433322  233479999999999999999999999999954        22        236889999999999


Q ss_pred             EEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363          342 QVSRLTGMVAYCSADGTVHRFQLTAKAV  369 (568)
Q Consensus       342 ~~sp~~~~l~s~s~Dg~v~iwd~~~~~~  369 (568)
                      +|+.+|-+|++++.|+.|++||++..+.
T Consensus       396 ~FsENGY~Lat~add~~V~lwDLRKl~n  423 (506)
T KOG0289|consen  396 SFSENGYWLATAADDGSVKLWDLRKLKN  423 (506)
T ss_pred             EeccCceEEEEEecCCeEEEEEehhhcc
Confidence            9999999999999999999999975443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.88  E-value=2.9e-21  Score=205.19  Aligned_cols=273  Identities=14%  Similarity=0.153  Sum_probs=195.2

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEe--CCCcEEEEECCC-CceeeEEeccCCccCCCCceEEEeecceec
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLL--GNGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEPVFRCS  171 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s--~dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~  171 (568)
                      ..+|.+..|++|..+|++          ..+|+|+  .||.++||+... .......            ...   +...+
T Consensus         8 wv~H~~~~IfSIdv~pdg----------~~~aTgGq~~d~~~~iW~~~~vl~~~~~~------------~~~---l~k~l   62 (942)
T KOG0973|consen    8 WVNHNEKSIFSIDVHPDG----------VKFATGGQVLDGGIVIWSQDPVLDEKEEK------------NEN---LPKHL   62 (942)
T ss_pred             ccccCCeeEEEEEecCCc----------eeEecCCccccccceeeccccccchhhhh------------hcc---cchhh
Confidence            468999899999999999          8999999  899999999875 1111000            000   00112


Q ss_pred             ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCC------------CCCCCceeEEeeCCCCCeeEEEEcc
Q 008363          172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASD------------SSIDSRPLLCFSADTLPIRAVSWAP  239 (568)
Q Consensus       172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~------------~~~~~~~~~~~~~h~~~V~~v~~~p  239 (568)
                      .....|.+.| .|+.|+  +||.+||+|++|+.|.||......            .....+.+..+.+|.+.|.+++|+|
T Consensus        63 ~~m~~h~~sv-~CVR~S--~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp  139 (942)
T KOG0973|consen   63 CTMDDHDGSV-NCVRFS--PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP  139 (942)
T ss_pred             eeeccccCce-eEEEEC--CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence            2236799999 999999  999999999999999999987310            0123457888999999999999999


Q ss_pred             CCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccC------
Q 008363          240 AESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYD------  312 (568)
Q Consensus       240 ~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~------  312 (568)
                      ++      .+||+++.|. |.+|+.++. ..+..+.+|.+.|-.+.|.|-|+||++-++|++|++|++.++.-.      
T Consensus       140 ~~------~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~p  212 (942)
T KOG0973|consen  140 DD------SLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKP  212 (942)
T ss_pred             Cc------cEEEEecccceEEEEccccc-eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccc
Confidence            98      8999999999 999999988 889999999999999999999999999999999999996542100      


Q ss_pred             ---CC-----------CCCCCcc----------------CccccceEEEecCCCCEEEEEEecC-----CC---------
Q 008363          313 ---VP-----------ATGKPFA----------------GTKQQGLHLVNCSSFAIWSVQVSRL-----TG---------  348 (568)
Q Consensus       313 ---~~-----------~~g~~~~----------------~~~~~~l~~~~~h~~~V~~l~~sp~-----~~---------  348 (568)
                         .+           ..|+.+.                ......-..+-||..++.++.|+|.     ..         
T Consensus       213 f~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~  292 (942)
T KOG0973|consen  213 FEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNC  292 (942)
T ss_pred             hhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCc
Confidence               00           0122111                0011112346699999999999983     12         


Q ss_pred             ---EEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccCCCC
Q 008363          349 ---MVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNT  402 (568)
Q Consensus       349 ---~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~  402 (568)
                         .+|+||.|++|-||.....+-.--...--...+...++++||-.|...+..+.+
T Consensus       293 ~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV  349 (942)
T KOG0973|consen  293 YYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTV  349 (942)
T ss_pred             ceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeE
Confidence               689999999999999854321110000001122333566666665554444333

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.88  E-value=6.5e-21  Score=194.29  Aligned_cols=276  Identities=15%  Similarity=0.142  Sum_probs=213.5

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------ccCCC
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------KEGTD  158 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------~~~~~  158 (568)
                      .-....+|... |+++++|.+.          ..+++|+ .++|+||+..+.+|++++.-.-.            +.|..
T Consensus       365 ~~i~~~GHR~d-VRsl~vS~d~----------~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k  432 (888)
T KOG0306|consen  365 SNIEIGGHRSD-VRSLCVSSDS----------ILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTK  432 (888)
T ss_pred             ceeeeccchhh-eeEEEeecCc----------eeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEecc
Confidence            34456799994 5599999998          4566554 58999999999999998743211            44555


Q ss_pred             CceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCC-CCCCce-e-----EEeeCCC
Q 008363          159 PRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDS-SIDSRP-L-----LCFSADT  229 (568)
Q Consensus       159 ~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~-~~~~~~-~-----~~~~~h~  229 (568)
                      .+.+.+.+...  ...+...|.+.| ++++-+  |++..+++|+.|.+|++||+.-... ....+. +     +++ .-.
T Consensus       433 ~Gel~vfdlaS~~l~Eti~AHdgaI-Wsi~~~--pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~  508 (888)
T KOG0306|consen  433 NGELQVFDLASASLVETIRAHDGAI-WSISLS--PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELE  508 (888)
T ss_pred             CCceEEEEeehhhhhhhhhccccce-eeeeec--CCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-ecc
Confidence            66666666655  233455899999 999977  8999999999999999999752211 000011 1     122 235


Q ss_pred             CCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363          230 LPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK  308 (568)
Q Consensus       230 ~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~  308 (568)
                      ..|.|+.++|++      .+||.+--|. |++|-+.+- +-...+.||.-+|.|+..+||+..|++|+.|..|++|-++-
T Consensus       509 ddvL~v~~Spdg------k~LaVsLLdnTVkVyflDtl-KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdF  581 (888)
T KOG0306|consen  509 DDVLCVSVSPDG------KLLAVSLLDNTVKVYFLDTL-KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDF  581 (888)
T ss_pred             ccEEEEEEcCCC------cEEEEEeccCeEEEEEecce-eeeeeecccccceeEEeccCCcCeEEeccCCCceEEecccc
Confidence            679999999999      8999999998 999998876 66678889999999999999999999999999999998843


Q ss_pred             cccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccC
Q 008363          309 AAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTE  388 (568)
Q Consensus       309 ~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~  388 (568)
                              |.+        ...+.+|...|.++.|.|...++++||.|+.|+.||-..-...+....+ ....-|-++++
T Consensus       582 --------GDC--------HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H-~~ev~cLav~~  644 (888)
T KOG0306|consen  582 --------GDC--------HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH-HSEVWCLAVSP  644 (888)
T ss_pred             --------chh--------hhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccc-hheeeeeEEcC
Confidence                    644        4688899999999999999999999999999999998765555443333 23455778899


Q ss_pred             CCCceEEcccCCCCCccc
Q 008363          389 DESAITVNTPLDNTPVPL  406 (568)
Q Consensus       389 ~~~~i~~~~~~~~~~~~~  406 (568)
                      .|..+...+....+.+..
T Consensus       645 ~G~~vvs~shD~sIRlwE  662 (888)
T KOG0306|consen  645 NGSFVVSSSHDKSIRLWE  662 (888)
T ss_pred             CCCeEEeccCCceeEeee
Confidence            999988888877776554

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.88  E-value=5.6e-21  Score=183.62  Aligned_cols=210  Identities=16%  Similarity=0.248  Sum_probs=174.4

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS  171 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~  171 (568)
                      +..+.||.-.+. .+.|+|+.          ..+++++.|-.|+||.+....+...+                       
T Consensus       254 l~~~~Gh~kki~-~v~~~~~~----------~~v~~aSad~~i~vws~~~~s~~~~~-----------------------  299 (506)
T KOG0289|consen  254 LATLKGHTKKIT-SVKFHKDL----------DTVITASADEIIRVWSVPLSSEPTSS-----------------------  299 (506)
T ss_pred             hhhccCcceEEE-EEEeccch----------hheeecCCcceEEeeccccccCcccc-----------------------
Confidence            445779999565 99999999          78999999999999999886554443                       


Q ss_pred             ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC--CCCCeeEEEEccCCCCCCCCcE
Q 008363          172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA--DTLPIRAVSWAPAESDSDSANV  249 (568)
Q Consensus       172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~~~~~~  249 (568)
                         ..|...| +.+.-+  |.|++|++++.||+..+.|++++      ..+.....  ..-.+++.+|+|+|      .+
T Consensus       300 ---~~h~~~V-~~ls~h--~tgeYllsAs~d~~w~Fsd~~~g------~~lt~vs~~~s~v~~ts~~fHpDg------Li  361 (506)
T KOG0289|consen  300 ---RPHEEPV-TGLSLH--PTGEYLLSASNDGTWAFSDISSG------SQLTVVSDETSDVEYTSAAFHPDG------LI  361 (506)
T ss_pred             ---ccccccc-eeeeec--cCCcEEEEecCCceEEEEEccCC------cEEEEEeeccccceeEEeeEcCCc------eE
Confidence               6788898 999977  88999999999999999999977      55544432  23458999999999      89


Q ss_pred             EEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363          250 ILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       250 las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                      |++|..|+ |+|||+..+ ..+..|.+|.++|..|+|+-+|.+|+++++|+.|++||+|+..        .        +
T Consensus       362 fgtgt~d~~vkiwdlks~-~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~--------n--------~  424 (506)
T KOG0289|consen  362 FGTGTPDGVVKIWDLKSQ-TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK--------N--------F  424 (506)
T ss_pred             EeccCCCceEEEEEcCCc-cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc--------c--------c
Confidence            99999999 999999988 5788899999999999999999999999999999999998743        1        2


Q ss_pred             EEEecC-CCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee
Q 008363          329 HLVNCS-SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE  370 (568)
Q Consensus       329 ~~~~~h-~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~  370 (568)
                      .++.-. ...|.++.|.+.|.+|+.++.|=.|++++-.+..+.
T Consensus       425 kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~  467 (506)
T KOG0289|consen  425 KTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWT  467 (506)
T ss_pred             ceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccce
Confidence            233322 247899999999999999998888888876554443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.88  E-value=6.4e-22  Score=193.66  Aligned_cols=211  Identities=20%  Similarity=0.340  Sum_probs=163.8

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      ..+|...+. +.+|+|...         ..+++++.||++|||++...+....+.             +-.+.       
T Consensus       264 TKGHia~lt-~g~whP~~k---------~~FlT~s~DgtlRiWdv~~~k~q~qVi-------------k~k~~-------  313 (641)
T KOG0772|consen  264 TKGHIAELT-CGCWHPDNK---------EEFLTCSYDGTLRIWDVNNTKSQLQVI-------------KTKPA-------  313 (641)
T ss_pred             cCCceeeee-ccccccCcc---------cceEEecCCCcEEEEecCCchhheeEE-------------eeccC-------
Confidence            457888454 999999986         789999999999999998844322211             11110       


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeE-EeeCCCC--CeeEEEEccCCCCCCCCcEEE
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLL-CFSADTL--PIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~--~V~~v~~~p~~~~~~~~~~la  251 (568)
                      .+-.-.+ ++++|+  ++|.+||+|+.||.|.+|+......    .+.. .-.+|..  .|+||+|+++|      ++|+
T Consensus       314 ~g~Rv~~-tsC~~n--rdg~~iAagc~DGSIQ~W~~~~~~v----~p~~~vk~AH~~g~~Itsi~FS~dg------~~Ll  380 (641)
T KOG0772|consen  314 GGKRVPV-TSCAWN--RDGKLIAAGCLDGSIQIWDKGSRTV----RPVMKVKDAHLPGQDITSISFSYDG------NYLL  380 (641)
T ss_pred             CCcccCc-eeeecC--CCcchhhhcccCCceeeeecCCccc----ccceEeeeccCCCCceeEEEecccc------chhh
Confidence            2333444 899999  9999999999999999999864422    3333 4467887  89999999999      9999


Q ss_pred             EEcCCC-EEEEECCCCCcceeeeCCCCC--CeEEEEEcCCCCEEEEEeC------CCcEEEEEccccccCCCCCCCCccC
Q 008363          252 TAGHGG-LKFWDIRDPFRPLWDIHPAPK--FIYGLDWLPDPGCVILSFD------DGAMRIVSLLKAAYDVPATGKPFAG  322 (568)
Q Consensus       252 s~s~d~-v~lwD~~~~~~~~~~~~~h~~--~i~~l~~sp~~~~l~s~~~------dg~I~lwd~~~~~~~~~~~g~~~~~  322 (568)
                      |-+.|. +++||+|+..+++....+-..  +-+.++|||+.+.|++|..      .|++.+||..++.            
T Consensus       381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d------------  448 (641)
T KOG0772|consen  381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD------------  448 (641)
T ss_pred             hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee------------
Confidence            999998 999999999888876654433  3478999999999999854      5679999985533            


Q ss_pred             ccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          323 TKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       323 ~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                          .+..+.-....|..+.|+|.-+.|+.++.||++++|-=
T Consensus       449 ----~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd  486 (641)
T KOG0772|consen  449 ----TVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYD  486 (641)
T ss_pred             ----eEEEecCCCceEEEEeecchhhheeeecCCCceEEEEC
Confidence                23455556788899999999889999999999999854

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.88  E-value=3e-21  Score=182.54  Aligned_cols=226  Identities=19%  Similarity=0.327  Sum_probs=169.6

Q ss_pred             CcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeec
Q 008363           88 ALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPV  167 (568)
Q Consensus        88 ~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~  167 (568)
                      ....+..+.+|.+ -=+.++|||-..         +.|++|.--+.|++|...++.-...                    
T Consensus       200 ~~~Pl~t~~ghk~-EGy~LdWSp~~~---------g~LlsGDc~~~I~lw~~~~g~W~vd--------------------  249 (440)
T KOG0302|consen  200 EFRPLFTFNGHKG-EGYGLDWSPIKT---------GRLLSGDCVKGIHLWEPSTGSWKVD--------------------  249 (440)
T ss_pred             ccCceEEecccCc-cceeeecccccc---------cccccCccccceEeeeeccCceeec--------------------
Confidence            3445667788887 445999999654         6899998889999999988543311                    


Q ss_pred             ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363          168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA  247 (568)
Q Consensus       168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~  247 (568)
                         ...+.+|+.+| -.|+|+|..+ ..|++||.||+|+|||++.+..    +.....++|.+.|+.|.|+...      
T Consensus       250 ---~~Pf~gH~~SV-EDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~----~~~~~~kAh~sDVNVISWnr~~------  314 (440)
T KOG0302|consen  250 ---QRPFTGHTKSV-EDLQWSPTED-GVFASCSCDGSIRIWDIRSGPK----KAAVSTKAHNSDVNVISWNRRE------  314 (440)
T ss_pred             ---Cccccccccch-hhhccCCccC-ceEEeeecCceEEEEEecCCCc----cceeEeeccCCceeeEEccCCc------
Confidence               11227899999 9999998866 4999999999999999997732    4445558999999999999998      


Q ss_pred             cEEEEEcCCC-EEEEECCCCC--cceeeeCCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEccccccC----CCCCCCC
Q 008363          248 NVILTAGHGG-LKFWDIRDPF--RPLWDIHPAPKFIYGLDWLPD-PGCVILSFDDGAMRIVSLLKAAYD----VPATGKP  319 (568)
Q Consensus       248 ~~las~s~d~-v~lwD~~~~~--~~~~~~~~h~~~i~~l~~sp~-~~~l~s~~~dg~I~lwd~~~~~~~----~~~~g~~  319 (568)
                      .+||+|++|| ++|||+|+-.  .++..|.-|..+|++|.|+|. ...|+++|.|.+|.|||+..-..+    .+..+. 
T Consensus       315 ~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~-  393 (440)
T KOG0302|consen  315 PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEG-  393 (440)
T ss_pred             ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccc-
Confidence            6999999999 9999999643  778899999999999999995 456777788999999999643321    000010 


Q ss_pred             ccCccccceEEEecC--CCCEEEEEEecC-CCEEEEEeCCCeEEEE
Q 008363          320 FAGTKQQGLHLVNCS--SFAIWSVQVSRL-TGMVAYCSADGTVHRF  362 (568)
Q Consensus       320 ~~~~~~~~l~~~~~h--~~~V~~l~~sp~-~~~l~s~s~Dg~v~iw  362 (568)
                      +..-..+   .+..|  ...|-.|.|++. ..+|++.+.||.-.+.
T Consensus       394 L~dlPpQ---LLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk  436 (440)
T KOG0302|consen  394 LQDLPPQ---LLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK  436 (440)
T ss_pred             hhcCCce---eEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence            1111112   22334  346788999998 4889999999864443

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=1.4e-21  Score=173.77  Aligned_cols=213  Identities=15%  Similarity=0.193  Sum_probs=177.8

Q ss_pred             cCCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCe
Q 008363          155 EGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPI  232 (568)
Q Consensus       155 ~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V  232 (568)
                      .+..++++++|...+  +..+..+|...| ..++-+  .|...|++|+.|..|.+||+.++      +.++.|.+|.+.|
T Consensus        34 tcGsdrtvrLWNp~rg~liktYsghG~EV-lD~~~s--~Dnskf~s~GgDk~v~vwDV~TG------kv~Rr~rgH~aqV  104 (307)
T KOG0316|consen   34 TCGSDRTVRLWNPLRGALIKTYSGHGHEV-LDAALS--SDNSKFASCGGDKAVQVWDVNTG------KVDRRFRGHLAQV  104 (307)
T ss_pred             EcCCCceEEeecccccceeeeecCCCcee-eecccc--ccccccccCCCCceEEEEEcccC------eeeeeccccccee
Confidence            467899999999988  788889999999 888866  78889999999999999999988      8999999999999


Q ss_pred             eEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccc
Q 008363          233 RAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAA  310 (568)
Q Consensus       233 ~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~  310 (568)
                      +.++|+...      .++++|+-|. +++||.|+.. .|++.+....+.|.++...  +..|++|+.||+++.||+|.  
T Consensus       105 NtV~fNees------SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~--  174 (307)
T KOG0316|consen  105 NTVRFNEES------SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRK--  174 (307)
T ss_pred             eEEEecCcc------eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeec--
Confidence            999999998      7999999998 9999999764 7888888888999999987  67899999999999999976  


Q ss_pred             cCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceee-eecccCC
Q 008363          311 YDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFL-CGSVTED  389 (568)
Q Consensus       311 ~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~s~~~~  389 (568)
                            |+..          -..-..+|+++.|+++++.++.++.|++|++.|-+++++.+.+..++...+. -..+...
T Consensus       175 ------G~l~----------sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qs  238 (307)
T KOG0316|consen  175 ------GTLS----------SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQS  238 (307)
T ss_pred             ------ceee----------hhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccc
Confidence                  5332          2234468999999999999999999999999999999998887766554433 2234444


Q ss_pred             CCceEEcccCCCC
Q 008363          390 ESAITVNTPLDNT  402 (568)
Q Consensus       390 ~~~i~~~~~~~~~  402 (568)
                      ...+..++-.+.+
T Consensus       239 dthV~sgSEDG~V  251 (307)
T KOG0316|consen  239 DTHVFSGSEDGKV  251 (307)
T ss_pred             ceeEEeccCCceE
Confidence            4444444443333

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.88  E-value=9.6e-22  Score=191.47  Aligned_cols=205  Identities=20%  Similarity=0.245  Sum_probs=164.1

Q ss_pred             ccCCCCceEEEeecce---ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCC
Q 008363          154 KEGTDPRFVKLEPVFR---CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTL  230 (568)
Q Consensus       154 ~~~~~~~~v~~~~~~~---~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~  230 (568)
                      ++++.|..|++|.+..   |+.++.||...| ..+.|+  .+|..|++++.|+.|++||+.++      +++..|.. ..
T Consensus       231 LS~gmD~~vklW~vy~~~~~lrtf~gH~k~V-rd~~~s--~~g~~fLS~sfD~~lKlwDtETG------~~~~~f~~-~~  300 (503)
T KOG0282|consen  231 LSGGMDGLVKLWNVYDDRRCLRTFKGHRKPV-RDASFN--NCGTSFLSASFDRFLKLWDTETG------QVLSRFHL-DK  300 (503)
T ss_pred             EecCCCceEEEEEEecCcceehhhhcchhhh-hhhhcc--ccCCeeeeeecceeeeeeccccc------eEEEEEec-CC
Confidence            5789999999999977   899999999999 999999  89999999999999999999988      88887743 45


Q ss_pred             CeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccc
Q 008363          231 PIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKA  309 (568)
Q Consensus       231 ~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~  309 (568)
                      .++|+.|+|++     ++.|++|+.|+ |+.||+|++ ..+..+..|-+.|..+.|-++|+.++++++|++++||+.+..
T Consensus       301 ~~~cvkf~pd~-----~n~fl~G~sd~ki~~wDiRs~-kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~  374 (503)
T KOG0282|consen  301 VPTCVKFHPDN-----QNIFLVGGSDKKIRQWDIRSG-KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIP  374 (503)
T ss_pred             CceeeecCCCC-----CcEEEEecCCCcEEEEeccch-HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCC
Confidence            68999999997     48999999998 999999998 788888899999999999999999999999999999997543


Q ss_pred             cc----------CCCC-----CCCCccC---------------ccccceEEEecCCC--CEEEEEEecCCCEEEEEeCCC
Q 008363          310 AY----------DVPA-----TGKPFAG---------------TKQQGLHLVNCSSF--AIWSVQVSRLTGMVAYCSADG  357 (568)
Q Consensus       310 ~~----------~~~~-----~g~~~~~---------------~~~~~l~~~~~h~~--~V~~l~~sp~~~~l~s~s~Dg  357 (568)
                      ..          ..|.     .+..+..               .....-..+.||..  --..+.|||||.+|++|+.||
T Consensus       375 v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG  454 (503)
T KOG0282|consen  375 VPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDG  454 (503)
T ss_pred             ccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCc
Confidence            10          0000     0000000               00001113456653  345689999999999999999


Q ss_pred             eEEEEEcCCCeeeccCC
Q 008363          358 TVHRFQLTAKAVEKDHS  374 (568)
Q Consensus       358 ~v~iwd~~~~~~~~~~~  374 (568)
                      .+.+||..+.++.....
T Consensus       455 ~v~~wdwkt~kl~~~lk  471 (503)
T KOG0282|consen  455 KVNFWDWKTTKLVSKLK  471 (503)
T ss_pred             cEEEeechhhhhhhccc
Confidence            99999998876655433

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=1.6e-21  Score=202.29  Aligned_cols=206  Identities=18%  Similarity=0.256  Sum_probs=164.1

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS  171 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~  171 (568)
                      +..+.||.+.+. ++.|+.++           +|++++.|.+||||++....|+..                        
T Consensus       362 ~~ef~GHt~DIL-DlSWSKn~-----------fLLSSSMDKTVRLWh~~~~~CL~~------------------------  405 (712)
T KOG0283|consen  362 FCEFKGHTADIL-DLSWSKNN-----------FLLSSSMDKTVRLWHPGRKECLKV------------------------  405 (712)
T ss_pred             hhhhhccchhhe-ecccccCC-----------eeEeccccccEEeecCCCcceeeE------------------------
Confidence            344789999777 99999997           999999999999999999999987                        


Q ss_pred             ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363          172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la  251 (568)
                         ..|...| +||+|+|. |.++|++|+-||.|+||++...      +.+... .-...|++++|.|+|      ++.+
T Consensus       406 ---F~HndfV-TcVaFnPv-DDryFiSGSLD~KvRiWsI~d~------~Vv~W~-Dl~~lITAvcy~PdG------k~av  467 (712)
T KOG0283|consen  406 ---FSHNDFV-TCVAFNPV-DDRYFISGSLDGKVRLWSISDK------KVVDWN-DLRDLITAVCYSPDG------KGAV  467 (712)
T ss_pred             ---EecCCee-EEEEeccc-CCCcEeecccccceEEeecCcC------eeEeeh-hhhhhheeEEeccCC------ceEE
Confidence               4688999 99999987 4579999999999999999865      443333 334779999999999      8999


Q ss_pred             EEcCCC-EEEEECCCCCcceeee--CCC------CCCeEEEEEcCCC-CEEEEEeCCCcEEEEEccccccCCCCCCCCcc
Q 008363          252 TAGHGG-LKFWDIRDPFRPLWDI--HPA------PKFIYGLDWLPDP-GCVILSFDDGAMRIVSLLKAAYDVPATGKPFA  321 (568)
Q Consensus       252 s~s~d~-v~lwD~~~~~~~~~~~--~~h------~~~i~~l~~sp~~-~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~  321 (568)
                      .|+.+| +++|++... +....+  ..|      ...|+.+.|.|.. ..|++.+.|..|||||.+.        -.   
T Consensus       468 IGt~~G~C~fY~t~~l-k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~--------~~---  535 (712)
T KOG0283|consen  468 IGTFNGYCRFYDTEGL-KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD--------KD---  535 (712)
T ss_pred             EEEeccEEEEEEccCC-eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc--------hh---
Confidence            999999 999999976 333222  111      2279999999844 3588888999999999954        11   


Q ss_pred             CccccceEEEecCCC--CEEEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363          322 GTKQQGLHLVNCSSF--AIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       322 ~~~~~~l~~~~~h~~--~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~  368 (568)
                           .++.|+|+..  .=....|+.+|++|++++.|..|+||++....
T Consensus       536 -----lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  536 -----LVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             -----hhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence                 2245555432  22456899999999999999999999985443

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=8.4e-21  Score=175.20  Aligned_cols=254  Identities=13%  Similarity=0.183  Sum_probs=188.9

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC----ceeeEEeccCC----------------cc
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL----RTMKAIYLSSM----------------KE  155 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~----~~~~~l~~~~~----------------~~  155 (568)
                      .+|.. .|+++.|.+.|          +.+|+|+.|++|+|||....    .+......|..                +.
T Consensus        10 s~h~D-lihdVs~D~~G----------RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~   78 (361)
T KOG2445|consen   10 SGHKD-LIHDVSFDFYG----------RRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVAT   78 (361)
T ss_pred             cCCcc-eeeeeeecccC----------ceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEE
Confidence            46776 88899999999          89999999999999996542    33334444433                67


Q ss_pred             CCCCceEEEeecce----e-------cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEE
Q 008363          156 GTDPRFVKLEPVFR----C-------SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLC  224 (568)
Q Consensus       156 ~~~~~~v~~~~~~~----~-------~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~  224 (568)
                      ++.|+.+.+|....    +       ..++......| +.|.|.|..-|-.||+++.||+||||+.-.............
T Consensus        79 cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV-~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~E  157 (361)
T KOG2445|consen   79 CSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSV-TDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHE  157 (361)
T ss_pred             EecCCceeeeeecccccccccceeEEEEEeecCCcce-eEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhh
Confidence            88999999998732    1       12334456778 999999888898999999999999999764432222233333


Q ss_pred             ee-------CCCCCeeEEEEccCCCCCCCCcEEEEEcCC------CEEEEECCCCC---cceeeeCCCCCCeEEEEEcCC
Q 008363          225 FS-------ADTLPIRAVSWAPAESDSDSANVILTAGHG------GLKFWDIRDPF---RPLWDIHPAPKFIYGLDWLPD  288 (568)
Q Consensus       225 ~~-------~h~~~V~~v~~~p~~~~~~~~~~las~s~d------~v~lwD~~~~~---~~~~~~~~h~~~i~~l~~sp~  288 (568)
                      +.       .+..+..||.|+|..   .++.+||.|+..      .+.||......   ..+..+.+|+++|+.|+|.|.
T Consensus       158 i~~~~~pp~~~~~~~~CvsWn~sr---~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn  234 (361)
T KOG2445|consen  158 IQNVIDPPGKNKQPCFCVSWNPSR---MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN  234 (361)
T ss_pred             hhhccCCcccccCcceEEeecccc---ccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence            33       467788999999763   466789999887      48898776554   334667799999999999995


Q ss_pred             ----CCEEEEEeCCCcEEEEEccccccCC----CCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 008363          289 ----PGCVILSFDDGAMRIVSLLKAAYDV----PATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVH  360 (568)
Q Consensus       289 ----~~~l~s~~~dg~I~lwd~~~~~~~~----~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~  360 (568)
                          ...|++++.|| |+||.+.......    ...+........+.+..+..|++.||.+.|+-.|..|++.|.||.|+
T Consensus       235 ~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VR  313 (361)
T KOG2445|consen  235 IGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVR  313 (361)
T ss_pred             cCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceee
Confidence                36788899999 9999997422110    01111222223456677889999999999999999999999999999


Q ss_pred             EEEcC
Q 008363          361 RFQLT  365 (568)
Q Consensus       361 iwd~~  365 (568)
                      +|...
T Consensus       314 LWkan  318 (361)
T KOG2445|consen  314 LWKAN  318 (361)
T ss_pred             ehhhh
Confidence            99874

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.88  E-value=1.3e-20  Score=170.34  Aligned_cols=219  Identities=14%  Similarity=0.223  Sum_probs=173.1

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-------------ccCCCCce
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-------------KEGTDPRF  161 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-------------~~~~~~~~  161 (568)
                      ..+|.+.+. .++|.|..+         .+|++++.|.+|++||+..+++...+.....             +.+..+..
T Consensus        60 ~~gh~~svd-ql~w~~~~~---------d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~  129 (313)
T KOG1407|consen   60 YRGHTDSVD-QLCWDPKHP---------DLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDR  129 (313)
T ss_pred             ccCCCcchh-hheeCCCCC---------cceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCccc
Confidence            468888566 999999887         8999999999999999999988877643322             22223333


Q ss_pred             EEEeecceec-ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC
Q 008363          162 VKLEPVFRCS-MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA  240 (568)
Q Consensus       162 v~~~~~~~~~-~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~  240 (568)
                      +...+..... .........+ .-+.|+  .++++++.....|+|.|.....-      +++..+++|.....||.|+|+
T Consensus       130 it~id~r~~~~~~~~~~~~e~-ne~~w~--~~nd~Fflt~GlG~v~ILsypsL------kpv~si~AH~snCicI~f~p~  200 (313)
T KOG1407|consen  130 ITFIDARTYKIVNEEQFKFEV-NEISWN--NSNDLFFLTNGLGCVEILSYPSL------KPVQSIKAHPSNCICIEFDPD  200 (313)
T ss_pred             EEEEEecccceeehhccccee-eeeeec--CCCCEEEEecCCceEEEEecccc------ccccccccCCcceEEEEECCC
Confidence            3333332211 1112233344 668888  56677777777899999988744      899999999999999999999


Q ss_pred             CCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCC
Q 008363          241 ESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKP  319 (568)
Q Consensus       241 ~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~  319 (568)
                      |      ++||+|+.|. +.|||+... .+++.+..+.-+|..|.|+.||++|+++++|..|-|=++        .+|..
T Consensus       201 G------ryfA~GsADAlvSLWD~~EL-iC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~v--------etGd~  265 (313)
T KOG1407|consen  201 G------RYFATGSADALVSLWDVDEL-ICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEV--------ETGDR  265 (313)
T ss_pred             C------ceEeeccccceeeccChhHh-hhheeeccccCceEEEEeccCcceeeccCccceEEeEec--------ccCCe
Confidence            9      9999999999 999999966 888999999999999999999999999999999998888        35755


Q ss_pred             ccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCC
Q 008363          320 FAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD  356 (568)
Q Consensus       320 ~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D  356 (568)
                      +        ..+. +.++...|+|+|...+||.++.|
T Consensus       266 ~--------~eI~-~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  266 V--------WEIP-CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             E--------EEee-ccCCceeEEecCCCceeeEEecC
Confidence            4        4544 77889999999999999998866

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.88  E-value=4.1e-21  Score=176.07  Aligned_cols=234  Identities=15%  Similarity=0.199  Sum_probs=175.2

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC  175 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~  175 (568)
                      .-|.|++. ++...+...         +++++|+.||.|.|||++.......          .+-+.+-..+ ....+..
T Consensus        40 r~HgGsvN-sL~id~teg---------rymlSGgadgsi~v~Dl~n~t~~e~----------s~li~k~~c~-v~~~h~~   98 (397)
T KOG4283|consen   40 RPHGGSVN-SLQIDLTEG---------RYMLSGGADGSIAVFDLQNATDYEA----------SGLIAKHKCI-VAKQHEN   98 (397)
T ss_pred             ccCCCccc-eeeeccccc---------eEEeecCCCccEEEEEeccccchhh----------ccceeheeee-ccccCCc
Confidence            35667555 999988765         8999999999999999987321100          0000000000 0122346


Q ss_pred             CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363          176 GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH  255 (568)
Q Consensus       176 ~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~  255 (568)
                      +|.-.| .++.|-|...| ++.+++.|.++++||.++.      +....|+ -.+.|++-+|+|-..   +..+||+|..
T Consensus        99 ~Hky~i-ss~~WyP~DtG-mFtssSFDhtlKVWDtnTl------Q~a~~F~-me~~VYshamSp~a~---sHcLiA~gtr  166 (397)
T KOG4283|consen   99 GHKYAI-SSAIWYPIDTG-MFTSSSFDHTLKVWDTNTL------QEAVDFK-MEGKVYSHAMSPMAM---SHCLIAAGTR  166 (397)
T ss_pred             cceeee-eeeEEeeecCc-eeecccccceEEEeecccc------eeeEEee-cCceeehhhcChhhh---cceEEEEecC
Confidence            899999 99999998554 9999999999999999866      5555563 367789999998651   2357777777


Q ss_pred             CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEEccccccCCCCCCCCcc-----Cccccce
Q 008363          256 GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVI-LSFDDGAMRIVSLLKAAYDVPATGKPFA-----GTKQQGL  328 (568)
Q Consensus       256 d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~-s~~~dg~I~lwd~~~~~~~~~~~g~~~~-----~~~~~~l  328 (568)
                      |- |++-|+.++ ..-.++.+|.+.|.++.|+|...+++ +|+.||.|++||+|...      |-...     +...+.+
T Consensus       167 ~~~VrLCDi~SG-s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras------gcf~~lD~hn~k~~p~~  239 (397)
T KOG4283|consen  167 DVQVRLCDIASG-SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS------GCFRVLDQHNTKRPPIL  239 (397)
T ss_pred             CCcEEEEeccCC-cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccc------ceeEEeecccCccCccc
Confidence            77 999999988 88899999999999999999888765 56779999999998753      21110     1111333


Q ss_pred             EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363          329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV  369 (568)
Q Consensus       329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~  369 (568)
                      .+-..|.+.|.+++|+.++.++++++.|..+++|+...+.-
T Consensus       240 ~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  240 KTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN  280 (397)
T ss_pred             cccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence            44567889999999999999999999999999999987753

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=6e-22  Score=202.54  Aligned_cols=213  Identities=15%  Similarity=0.257  Sum_probs=174.6

Q ss_pred             CcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeec
Q 008363           88 ALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPV  167 (568)
Q Consensus        88 ~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~  167 (568)
                      ..+.+..+..|.. .+.++.|++..+         .+|++|+.||.|++||+.......++                   
T Consensus       122 rnk~l~~f~EH~R-s~~~ldfh~tep---------~iliSGSQDg~vK~~DlR~~~S~~t~-------------------  172 (839)
T KOG0269|consen  122 RNKLLTVFNEHER-SANKLDFHSTEP---------NILISGSQDGTVKCWDLRSKKSKSTF-------------------  172 (839)
T ss_pred             cchhhhHhhhhcc-ceeeeeeccCCc---------cEEEecCCCceEEEEeeecccccccc-------------------
Confidence            3455556778988 555999999988         89999999999999999986665554                   


Q ss_pred             ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363          168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA  247 (568)
Q Consensus       168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~  247 (568)
                             .+....| ..|.|+|.+ +..|+++...|.+.+||++..     .++...+.+|.++|.|+.|+|++      
T Consensus       173 -------~~nSESi-RDV~fsp~~-~~~F~s~~dsG~lqlWDlRqp-----~r~~~k~~AH~GpV~c~nwhPnr------  232 (839)
T KOG0269|consen  173 -------RSNSESI-RDVKFSPGY-GNKFASIHDSGYLQLWDLRQP-----DRCEKKLTAHNGPVLCLNWHPNR------  232 (839)
T ss_pred             -------cccchhh-hceeeccCC-CceEEEecCCceEEEeeccCc-----hhHHHHhhcccCceEEEeecCCC------
Confidence                   5567778 999999885 579999999999999999965     36777889999999999999988      


Q ss_pred             cEEEEEcCCC-EEEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEEccccccCCCCCCCCccC
Q 008363          248 NVILTAGHGG-LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSF---DDGAMRIVSLLKAAYDVPATGKPFAG  322 (568)
Q Consensus       248 ~~las~s~d~-v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~---~dg~I~lwd~~~~~~~~~~~g~~~~~  322 (568)
                      .+|||||.|+ |+|||..+.. .++.++. -..+|.+|.|-|..++.++.+   .|-.|+|||++...            
T Consensus       233 ~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY------------  299 (839)
T KOG0269|consen  233 EWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY------------  299 (839)
T ss_pred             ceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccc------------
Confidence            8999999999 9999998653 3444443 256789999999877655543   38899999997543            


Q ss_pred             ccccceEEEecCCCCEEEEEEecC-CCEEEEEeCCCeEEEEEcC
Q 008363          323 TKQQGLHLVNCSSFAIWSVQVSRL-TGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       323 ~~~~~l~~~~~h~~~V~~l~~sp~-~~~l~s~s~Dg~v~iwd~~  365 (568)
                         -+..++..|...++.++|... ...|.+++.||+|..-.+.
T Consensus       300 ---IP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k  340 (839)
T KOG0269|consen  300 ---IPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK  340 (839)
T ss_pred             ---ccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence               566899999999999999763 4788999999988765553

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.88  E-value=3.7e-21  Score=204.34  Aligned_cols=231  Identities=19%  Similarity=0.268  Sum_probs=173.9

Q ss_pred             cceEEE-eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeec
Q 008363           89 LPRVVL-CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPV  167 (568)
Q Consensus        89 ~p~~~~-~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~  167 (568)
                      +|..+. ...|.+ .|.|++|+|+|          .+||+|++|+.|.||.... .......+.    ......+.-|. 
T Consensus        58 l~k~l~~m~~h~~-sv~CVR~S~dG----------~~lAsGSDD~~v~iW~~~~-~~~~~~fgs----~g~~~~vE~wk-  120 (942)
T KOG0973|consen   58 LPKHLCTMDDHDG-SVNCVRFSPDG----------SYLASGSDDRLVMIWERAE-IGSGTVFGS----TGGAKNVESWK-  120 (942)
T ss_pred             cchhheeeccccC-ceeEEEECCCC----------CeEeeccCcceEEEeeecc-cCCcccccc----cccccccceee-
Confidence            454444 456888 66699999999          8999999999999999885 111111111    01111122222 


Q ss_pred             ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363          168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA  247 (568)
Q Consensus       168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~  247 (568)
                        +...+.+|...| ..+.|+  |++.+||+++.|++|.||+..+.      ..+..+.+|.+.|..+.|.|-|      
T Consensus       121 --~~~~l~~H~~DV-~Dv~Ws--p~~~~lvS~s~DnsViiwn~~tF------~~~~vl~~H~s~VKGvs~DP~G------  183 (942)
T KOG0973|consen  121 --VVSILRGHDSDV-LDVNWS--PDDSLLVSVSLDNSVIIWNAKTF------ELLKVLRGHQSLVKGVSWDPIG------  183 (942)
T ss_pred             --EEEEEecCCCcc-ceeccC--CCccEEEEecccceEEEEccccc------eeeeeeecccccccceEECCcc------
Confidence              334458899999 999999  78999999999999999999876      8899999999999999999999      


Q ss_pred             cEEEEEcCCC-EEEEECCCCC---------------------------------------------------cceeeeCC
Q 008363          248 NVILTAGHGG-LKFWDIRDPF---------------------------------------------------RPLWDIHP  275 (568)
Q Consensus       248 ~~las~s~d~-v~lwD~~~~~---------------------------------------------------~~~~~~~~  275 (568)
                      +||||-++|+ |+||++.+..                                                   ..-..+-+
T Consensus       184 ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG  263 (942)
T KOG0973|consen  184 KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG  263 (942)
T ss_pred             CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec
Confidence            8999999999 9999975521                                                   00112247


Q ss_pred             CCCCeEEEEEcCC-----CC------------EEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCE
Q 008363          276 APKFIYGLDWLPD-----PG------------CVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAI  338 (568)
Q Consensus       276 h~~~i~~l~~sp~-----~~------------~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V  338 (568)
                      |..++.++.|+|.     ..            .+++|+.|++|-||....        .+|+       +-...--...|
T Consensus       264 H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~--------~RPl-------~vi~~lf~~SI  328 (942)
T KOG0973|consen  264 HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL--------PRPL-------FVIHNLFNKSI  328 (942)
T ss_pred             CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC--------CCch-------hhhhhhhcCce
Confidence            8888889999872     11            567788899999999832        3332       11222335689


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363          339 WSVQVSRLTGMVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       339 ~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~  368 (568)
                      ..++|+|+|..|+.||.||+|.++.++...
T Consensus       329 ~DmsWspdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  329 VDMSWSPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             eeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence            999999999999999999999999997543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.87  E-value=2.8e-21  Score=178.22  Aligned_cols=218  Identities=16%  Similarity=0.239  Sum_probs=173.8

Q ss_pred             CcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeec
Q 008363           88 ALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPV  167 (568)
Q Consensus        88 ~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~  167 (568)
                      ..|-+..+..|...+. ++.|+|..          .+|++|+.|++|++||+......+.+              ++   
T Consensus       161 ~hPvIRTlYDH~devn-~l~FHPre----------~ILiS~srD~tvKlFDfsK~saKrA~--------------K~---  212 (430)
T KOG0640|consen  161 RHPVIRTLYDHVDEVN-DLDFHPRE----------TILISGSRDNTVKLFDFSKTSAKRAF--------------KV---  212 (430)
T ss_pred             CCceEeehhhccCccc-ceeecchh----------heEEeccCCCeEEEEecccHHHHHHH--------------HH---
Confidence            4588889999999666 99999999          89999999999999999873322211              00   


Q ss_pred             ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe---eCCCCCeeEEEEccCCCCC
Q 008363          168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF---SADTLPIRAVSWAPAESDS  244 (568)
Q Consensus       168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~---~~h~~~V~~v~~~p~~~~~  244 (568)
                             ......| .++.|+  |.|++|++|..--++++||+.+-      ++...-   .+|++.|++|.+++.+   
T Consensus       213 -------~qd~~~v-rsiSfH--PsGefllvgTdHp~~rlYdv~T~------QcfvsanPd~qht~ai~~V~Ys~t~---  273 (430)
T KOG0640|consen  213 -------FQDTEPV-RSISFH--PSGEFLLVGTDHPTLRLYDVNTY------QCFVSANPDDQHTGAITQVRYSSTG---  273 (430)
T ss_pred             -------hhcccee-eeEeec--CCCceEEEecCCCceeEEeccce------eEeeecCcccccccceeEEEecCCc---
Confidence                   2334566 899988  88999999999999999999976      444322   4689999999999999   


Q ss_pred             CCCcEEEEEcCCC-EEEEECCCCCcceeeeC-CCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCcc
Q 008363          245 DSANVILTAGHGG-LKFWDIRDPFRPLWDIH-PAPK-FIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFA  321 (568)
Q Consensus       245 ~~~~~las~s~d~-v~lwD~~~~~~~~~~~~-~h~~-~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~  321 (568)
                         ++.++++.|| |+|||--+. +|+.++. .|.+ .|.+..|..+++||+++|.|..|+||.+..        |+++.
T Consensus       274 ---~lYvTaSkDG~IklwDGVS~-rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t--------~R~l~  341 (430)
T KOG0640|consen  274 ---SLYVTASKDGAIKLWDGVSN-RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST--------GRMLK  341 (430)
T ss_pred             ---cEEEEeccCCcEEeeccccH-HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecC--------CceEE
Confidence               8999999999 999998877 8887764 5544 589999999999999999999999999843        33321


Q ss_pred             C---c--------------------------cccceEE------------EecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 008363          322 G---T--------------------------KQQGLHL------------VNCSSFAIWSVQVSRLTGMVAYCSADGTVH  360 (568)
Q Consensus       322 ~---~--------------------------~~~~l~~------------~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~  360 (568)
                      .   .                          ....+..            --+|++++..+.-+|.+..+++|+.|-.++
T Consensus       342 ~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raR  421 (430)
T KOG0640|consen  342 EYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRAR  421 (430)
T ss_pred             EEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceee
Confidence            0   0                          0000111            137999999999999999999999999999


Q ss_pred             EEEc
Q 008363          361 RFQL  364 (568)
Q Consensus       361 iwd~  364 (568)
                      +|--
T Consensus       422 FWyr  425 (430)
T KOG0640|consen  422 FWYR  425 (430)
T ss_pred             eeee
Confidence            9964

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.87  E-value=1e-21  Score=181.94  Aligned_cols=234  Identities=15%  Similarity=0.231  Sum_probs=189.8

Q ss_pred             CcccCCCCCcccCCCCCCCcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEe
Q 008363           70 GDFLSKPSLVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIY  149 (568)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~  149 (568)
                      |.+.-.++.....+.++..-...-.+.-|+..+. |+.|+.+.          ..||+|+.||.|+||.+.+|+|++.+.
T Consensus       234 DGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVl-ci~FSRDs----------EMlAsGsqDGkIKvWri~tG~ClRrFd  302 (508)
T KOG0275|consen  234 DGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVL-CISFSRDS----------EMLASGSQDGKIKVWRIETGQCLRRFD  302 (508)
T ss_pred             cceeeeehhccchhhhhhhhhhhcceeecccceE-EEeecccH----------HHhhccCcCCcEEEEEEecchHHHHhh
Confidence            4444444443444444433333344566777455 99999999          799999999999999999999998761


Q ss_pred             ccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCC
Q 008363          150 LSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADT  229 (568)
Q Consensus       150 ~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~  229 (568)
                                               ..|+..| +|+.|+  .|+..|++++.|.+++|.-+.++      +++..|++|+
T Consensus       303 -------------------------rAHtkGv-t~l~FS--rD~SqiLS~sfD~tvRiHGlKSG------K~LKEfrGHs  348 (508)
T KOG0275|consen  303 -------------------------RAHTKGV-TCLSFS--RDNSQILSASFDQTVRIHGLKSG------KCLKEFRGHS  348 (508)
T ss_pred             -------------------------hhhccCe-eEEEEc--cCcchhhcccccceEEEeccccc------hhHHHhcCcc
Confidence                                     4799999 999999  99999999999999999999977      8999999999


Q ss_pred             CCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeC--CCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 008363          230 LPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIH--PAPKFIYGLDWLP-DPGCVILSFDDGAMRIVS  305 (568)
Q Consensus       230 ~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~--~h~~~i~~l~~sp-~~~~l~s~~~dg~I~lwd  305 (568)
                      +.|+...|.++|      +.+++++.|+ |++|+..+. .|+.++.  +..-+|+++...| +...++++...++|++.+
T Consensus       349 Syvn~a~ft~dG------~~iisaSsDgtvkvW~~Ktt-eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn  421 (508)
T KOG0275|consen  349 SYVNEATFTDDG------HHIISASSDGTVKVWHGKTT-ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMN  421 (508)
T ss_pred             ccccceEEcCCC------CeEEEecCCccEEEecCcch-hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEe
Confidence            999999999999      8999999999 999999987 7776665  3455688888777 456788888899999999


Q ss_pred             ccccccCCCCCCCCccCccccceEEEec---CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          306 LLKAAYDVPATGKPFAGTKQQGLHLVNC---SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       306 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~---h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                      +         .|+.+        +.+..   ..+...+.+.+|.|.++...+.|+.++.|.+.++++++.
T Consensus       422 ~---------qGQvV--------rsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~t  474 (508)
T KOG0275|consen  422 M---------QGQVV--------RSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERT  474 (508)
T ss_pred             c---------cceEE--------eeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeee
Confidence            8         35443        44442   234566778999999999999999999999999988865

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=3.1e-20  Score=164.17  Aligned_cols=225  Identities=17%  Similarity=0.232  Sum_probs=164.0

Q ss_pred             CceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcC
Q 008363          100 GKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ  179 (568)
Q Consensus       100 ~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~  179 (568)
                      ...|++|+|+|.|          ++.|+|+...+++|...+.-..++  ..|.  ....+..+..       +....|.+
T Consensus        32 sqairav~fhp~g----------~lyavgsnskt~ric~yp~l~~~r--~~he--a~~~pp~v~~-------kr~khhkg   90 (350)
T KOG0641|consen   32 SQAIRAVAFHPAG----------GLYAVGSNSKTFRICAYPALIDLR--HAHE--AAKQPPSVLC-------KRNKHHKG   90 (350)
T ss_pred             hhheeeEEecCCC----------ceEEeccCCceEEEEccccccCcc--cccc--cccCCCeEEe-------eeccccCc
Confidence            3467799999999          899999999999998776522111  1111  1112222222       22257899


Q ss_pred             ccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCC----------------
Q 008363          180 SIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESD----------------  243 (568)
Q Consensus       180 ~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~----------------  243 (568)
                      .| +|.+|+  |.|.+|++|+.|.+|++..++....+.. -.-..|.-|.+.|..++|-.+...                
T Consensus        91 si-yc~~ws--~~geliatgsndk~ik~l~fn~dt~~~~-g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy  166 (350)
T KOG0641|consen   91 SI-YCTAWS--PCGELIATGSNDKTIKVLPFNADTCNAT-GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIY  166 (350)
T ss_pred             cE-EEEEec--CccCeEEecCCCceEEEEeccccccccc-CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEE
Confidence            99 999999  8899999999999999987765432111 112234445555555555332100                


Q ss_pred             ------------------------CCCCcEEEEEcCCC-EEEEECCCCCcceeeeCC--C-----CCCeEEEEEcCCCCE
Q 008363          244 ------------------------SDSANVILTAGHGG-LKFWDIRDPFRPLWDIHP--A-----PKFIYGLDWLPDPGC  291 (568)
Q Consensus       244 ------------------------~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~--h-----~~~i~~l~~sp~~~~  291 (568)
                                              +-+.-+|++|+.|. |++||+|-+ .++.++..  |     ...|.+++..|.|+.
T Consensus       167 ~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vdpsgrl  245 (350)
T KOG0641|consen  167 ITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVDPSGRL  245 (350)
T ss_pred             EeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEECCCcce
Confidence                                    00236899999998 999999977 66655531  2     356899999999999


Q ss_pred             EEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          292 VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       292 l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                      |++|-.|....+||+|-        |+++        +.+..|...|.++.|+|...||++|+.|..|++-|+..
T Consensus       246 l~sg~~dssc~lydirg--------~r~i--------q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  246 LASGHADSSCMLYDIRG--------GRMI--------QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             eeeccCCCceEEEEeeC--------Ccee--------eeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence            99999999999999963        6554        68899999999999999999999999999999999954

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.87  E-value=1.1e-20  Score=183.21  Aligned_cols=237  Identities=16%  Similarity=0.229  Sum_probs=179.0

Q ss_pred             ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363           97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG  176 (568)
Q Consensus        97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~  176 (568)
                      +|...++ +++.++++          ++||+|+.|..|.||+..+.+.++.+                          .+
T Consensus       200 ~h~keil-~~avS~Dg----------kylatgg~d~~v~Iw~~~t~ehv~~~--------------------------~g  242 (479)
T KOG0299|consen  200 GHVKEIL-TLAVSSDG----------KYLATGGRDRHVQIWDCDTLEHVKVF--------------------------KG  242 (479)
T ss_pred             cccceeE-EEEEcCCC----------cEEEecCCCceEEEecCcccchhhcc--------------------------cc
Confidence            7888566 99999999          89999999999999999998888776                          89


Q ss_pred             CcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC
Q 008363          177 GTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG  256 (568)
Q Consensus       177 h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d  256 (568)
                      |.+.| .+++|-  .....|++++.|++|++|++...      ..+.++.+|.+.|.+|......      ..+..|+.|
T Consensus       243 hr~~V-~~L~fr--~gt~~lys~s~Drsvkvw~~~~~------s~vetlyGHqd~v~~IdaL~re------R~vtVGgrD  307 (479)
T KOG0299|consen  243 HRGAV-SSLAFR--KGTSELYSASADRSVKVWSIDQL------SYVETLYGHQDGVLGIDALSRE------RCVTVGGRD  307 (479)
T ss_pred             cccce-eeeeee--cCccceeeeecCCceEEEehhHh------HHHHHHhCCccceeeechhccc------ceEEecccc
Confidence            99999 999988  56678999999999999999865      7788889999999999888876      566666689


Q ss_pred             C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcc-ccceEEE---
Q 008363          257 G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTK-QQGLHLV---  331 (568)
Q Consensus       257 ~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~-~~~l~~~---  331 (568)
                      . +++|++...  ....+.+|.+.+-|++|-.+ ..+++|+.+|.|.||++-+        .+++.... -+.+...   
T Consensus       308 rT~rlwKi~ee--sqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~K--------Kkplf~~~~AHgv~~~~~~  376 (479)
T KOG0299|consen  308 RTVRLWKIPEE--SQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLK--------KKPLFTSRLAHGVIPELDP  376 (479)
T ss_pred             ceeEEEecccc--ceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecc--------cCceeEeeccccccCCccc
Confidence            8 999999543  34457788999999999854 5699999999999999954        22221000 0001110   


Q ss_pred             ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee-ccCCCCCcceeeee-cccCCCCceEEc
Q 008363          332 NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE-KDHSRNRPMHFLCG-SVTEDESAITVN  396 (568)
Q Consensus       332 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~-s~~~~~~~i~~~  396 (568)
                      ..+...|++|+..|...++++|+.+|.|++|.+..+.-. .....-+...|.+. .++.+|..|..+
T Consensus       377 ~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  377 VNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             cccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence            112247999999999999999999999999999766211 11111223333333 456666655544

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.87  E-value=2.7e-21  Score=182.00  Aligned_cols=239  Identities=16%  Similarity=0.174  Sum_probs=183.5

Q ss_pred             CCCCCCCcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------
Q 008363           82 PIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------  153 (568)
Q Consensus        82 ~~~~~~~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------  153 (568)
                      .|+.-.....+..+.+|.| .|..|++.. +           .+++++.|.+|+.|.+... .+.++.+...        
T Consensus        92 kiWnlsqR~~~~~f~AH~G-~V~Gi~v~~-~-----------~~~tvgdDKtvK~wk~~~~-p~~tilg~s~~~gIdh~~  157 (433)
T KOG0268|consen   92 KIWNLSQRECIRTFKAHEG-LVRGICVTQ-T-----------SFFTVGDDKTVKQWKIDGP-PLHTILGKSVYLGIDHHR  157 (433)
T ss_pred             EEEehhhhhhhheeecccC-ceeeEEecc-c-----------ceEEecCCcceeeeeccCC-cceeeecccccccccccc
Confidence            3333334445667889999 777999887 3           5888999999999997763 5555544332        


Q ss_pred             ---ccCCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC
Q 008363          154 ---KEGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD  228 (568)
Q Consensus       154 ---~~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h  228 (568)
                         .-.+.+..+.+|+...  ....+.-....| .++.|+|... .+|++|..|+.|.|||++..      .+++.+. -
T Consensus       158 ~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti-~svkfNpvET-sILas~~sDrsIvLyD~R~~------~Pl~KVi-~  228 (433)
T KOG0268|consen  158 KNSVFATCGEQIDIWDEQRDNPVSSMSWGADSI-SSVKFNPVET-SILASCASDRSIVLYDLRQA------SPLKKVI-L  228 (433)
T ss_pred             ccccccccCceeeecccccCCccceeecCCCce-eEEecCCCcc-hheeeeccCCceEEEecccC------Cccceee-e
Confidence               3345666788898765  333334445667 8899996644 58888889999999999987      5555332 2


Q ss_pred             CCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 008363          229 TLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLL  307 (568)
Q Consensus       229 ~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~  307 (568)
                      ...-+.|+|+|..      ..|++|++|. ++.+|+|....++....+|...|.+++|+|.|+-+++|+.|.+|+||..+
T Consensus       229 ~mRTN~IswnPea------fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~  302 (433)
T KOG0268|consen  229 TMRTNTICWNPEA------FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVN  302 (433)
T ss_pred             eccccceecCccc------cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecC
Confidence            3446789999977      8899999998 99999999889999999999999999999999999999999999999996


Q ss_pred             ccccCCCCCCCCccCccccceEEE-ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          308 KAAYDVPATGKPFAGTKQQGLHLV-NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       308 ~~~~~~~~~g~~~~~~~~~~l~~~-~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      ...        .-        -.+ ..--+.|.++.||.|.+|+++||.|+.|++|...
T Consensus       303 ~~~--------SR--------diYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  303 HGH--------SR--------DIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             CCc--------ch--------hhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence            422        10        011 1112578999999999999999999999999874

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=2.5e-20  Score=188.77  Aligned_cols=211  Identities=18%  Similarity=0.274  Sum_probs=170.9

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD  202 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D  202 (568)
                      +.||+|.. ..|++|+..++......                          ..+...| ++|.|+  ++|.+|++|..+
T Consensus       189 n~laValg-~~vylW~~~s~~v~~l~--------------------------~~~~~~v-tSv~ws--~~G~~LavG~~~  238 (484)
T KOG0305|consen  189 NVLAVALG-QSVYLWSASSGSVTELC--------------------------SFGEELV-TSVKWS--PDGSHLAVGTSD  238 (484)
T ss_pred             CeEEEEec-ceEEEEecCCCceEEeE--------------------------ecCCCce-EEEEEC--CCCCEEEEeecC
Confidence            47888765 57999999987644322                          2236777 999999  899999999999


Q ss_pred             CeEEEEEccCCCCCCCCceeEEeeC-CCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCe
Q 008363          203 GTVALWKFVASDSSIDSRPLLCFSA-DTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFI  280 (568)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i  280 (568)
                      |.|.|||....      +.+..+.+ |...|-+++|+  .      ..+.+|+.++ |..+|++.....+..+.+|...|
T Consensus       239 g~v~iwD~~~~------k~~~~~~~~h~~rvg~laW~--~------~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeV  304 (484)
T KOG0305|consen  239 GTVQIWDVKEQ------KKTRTLRGSHASRVGSLAWN--S------SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEV  304 (484)
T ss_pred             CeEEEEehhhc------cccccccCCcCceeEEEecc--C------ceEEEecCCCcEEEEEEecchhhhhhhhccccee
Confidence            99999999866      67777877 99999999999  3      5899999999 99999998855555588999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecC-CCEEEEEe--CCC
Q 008363          281 YGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL-TGMVAYCS--ADG  357 (568)
Q Consensus       281 ~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~-~~~l~s~s--~Dg  357 (568)
                      ..+.|++|+.++++|+.|+.+.|||...        .        .++..+..|.++|..++|+|. ..+||+|+  .|+
T Consensus       305 CgLkws~d~~~lASGgnDN~~~Iwd~~~--------~--------~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~  368 (484)
T KOG0305|consen  305 CGLKWSPDGNQLASGGNDNVVFIWDGLS--------P--------EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADR  368 (484)
T ss_pred             eeeEECCCCCeeccCCCccceEeccCCC--------c--------cccEEEeccceeeeEeeeCCCccCceEEcCCCccc
Confidence            9999999999999999999999999932        2        334688999999999999998 48888876  799


Q ss_pred             eEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEE
Q 008363          358 TVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITV  395 (568)
Q Consensus       358 ~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~  395 (568)
                      .|++||..++.........-+..-+  .++...+.|..
T Consensus       369 ~i~fwn~~~g~~i~~vdtgsQVcsL--~Wsk~~kEi~s  404 (484)
T KOG0305|consen  369 CIKFWNTNTGARIDSVDTGSQVCSL--IWSKKYKELLS  404 (484)
T ss_pred             EEEEEEcCCCcEecccccCCceeeE--EEcCCCCEEEE
Confidence            9999999988777654333222222  46666655554

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=9.2e-20  Score=176.67  Aligned_cols=296  Identities=14%  Similarity=0.187  Sum_probs=208.4

Q ss_pred             cCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC
Q 008363          178 TQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG  257 (568)
Q Consensus       178 ~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~  257 (568)
                      .+.| ++|.|+  |...+|++|+.||+++||-+.....    ..++.+.--..+|.+..|.|+|.     ..+++++...
T Consensus       213 ~~~I-~sv~FH--p~~plllvaG~d~~lrifqvDGk~N----~~lqS~~l~~fPi~~a~f~p~G~-----~~i~~s~rrk  280 (514)
T KOG2055|consen  213 HGGI-TSVQFH--PTAPLLLVAGLDGTLRIFQVDGKVN----PKLQSIHLEKFPIQKAEFAPNGH-----SVIFTSGRRK  280 (514)
T ss_pred             cCCc-eEEEec--CCCceEEEecCCCcEEEEEecCccC----hhheeeeeccCccceeeecCCCc-----eEEEecccce
Confidence            4567 999999  6677999999999999999986532    45566655678999999999992     4888888888


Q ss_pred             -EEEEECCCCC-cceeeeCCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363          258 -LKFWDIRDPF-RPLWDIHPAP-KFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS  334 (568)
Q Consensus       258 -v~lwD~~~~~-~~~~~~~~h~-~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h  334 (568)
                       ++.||+.+.. ..+..+.++. ..+.....+|++.+|++.|..|.|.|...        .+++.+        .+++ -
T Consensus       281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLha--------kT~eli--------~s~K-i  343 (514)
T KOG2055|consen  281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHA--------KTKELI--------TSFK-I  343 (514)
T ss_pred             EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehh--------hhhhhh--------heee-e
Confidence             9999998764 3334444554 34678899999999999999999999988        346554        3544 5


Q ss_pred             CCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccCCCCCccccccccccc
Q 008363          335 SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKTVHDAG  414 (568)
Q Consensus       335 ~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~k~~~~~~g  414 (568)
                      .+.|..++|+.+++.|++++.+|.|++||+....+..........+-...+.+.++..+++|+..+.+.+........-+
T Consensus       344 eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~  423 (514)
T KOG2055|consen  344 EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST  423 (514)
T ss_pred             ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccC
Confidence            67899999999999999999999999999988766554333333333333566788888888776666433211111111


Q ss_pred             c-ccccceeeccCCCCCCCCcCCCCccCCCCCccccccCCCCCCCCcchhhHHhhhccCCCCCCCcccccccCCceeEEe
Q 008363          415 E-RSMRSFLIESNSSKSPNDKKGKNVLSSDNQPLALCYGNEPGEESEGDMTLAALKNKQKPKSRSSSKKKEEDDQAMVCI  493 (568)
Q Consensus       415 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~kkk~k~~~~~~~~~~~~~~~~~~  493 (568)
                      . .++..+   +| .+.+...+   .-..+.|.|+++..                 .+             ++...+|++
T Consensus       424 ~PkPik~~---dN-Ltt~Itsl---~Fn~d~qiLAiaS~-----------------~~-------------knalrLVHv  466 (514)
T KOG2055|consen  424 NPKPIKTV---DN-LTTAITSL---QFNHDAQILAIASR-----------------VK-------------KNALRLVHV  466 (514)
T ss_pred             CCCchhhh---hh-hheeeeee---eeCcchhhhhhhhh-----------------cc-------------ccceEEEec
Confidence            0 111111   11 00000000   00112244444322                 11             267789998


Q ss_pred             ccccccccCCCcccCCCCCCceecCCceeEEeeeeccCCCCc-ceeEEecCccceEEEeeeec
Q 008363          494 DEEATDIQGKENEKGEAGNGIEVLPPKVVAMHRVRWNMNKGS-ERWLCYGGAGGIIRCQEIRV  555 (568)
Q Consensus       494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wn~~~~~-~~~l~~~~~~g~~r~~~~~~  555 (568)
                      ++-               ..+.+||+...+|++|| +|.++. .++||+|+++|.|++=++.+
T Consensus       467 PS~---------------TVFsNfP~~n~~vg~vt-c~aFSP~sG~lAvGNe~grv~l~kL~h  513 (514)
T KOG2055|consen  467 PSC---------------TVFSNFPTSNTKVGHVT-CMAFSPNSGYLAVGNEAGRVHLFKLHH  513 (514)
T ss_pred             cce---------------eeeccCCCCCCcccceE-EEEecCCCceEEeecCCCceeeEeecc
Confidence            877               67889999999999999 999986 89999999999999988765

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.86  E-value=2.4e-20  Score=188.90  Aligned_cols=254  Identities=15%  Similarity=0.171  Sum_probs=193.5

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceee--EEeccCC----------------ccC
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMK--AIYLSSM----------------KEG  156 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~--~l~~~~~----------------~~~  156 (568)
                      ..+|...+ +.+++.+..           .+++++.||+++||+-...+.+.  .++++..                ..+
T Consensus        10 l~gH~~DV-r~v~~~~~~-----------~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g   77 (745)
T KOG0301|consen   10 LEGHKSDV-RAVAVTDGV-----------CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVG   77 (745)
T ss_pred             eccCccch-heeEecCCe-----------EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEee
Confidence            46888855 477776665           89999999999999986644433  2333322                236


Q ss_pred             CCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeE
Q 008363          157 TDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRA  234 (568)
Q Consensus       157 ~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~  234 (568)
                      +.|..+-++....  ...++.||...| .|++-.  .++ .+++||.|.++++|...        ++...+.+|+..|++
T Consensus        78 ~~D~~i~v~~~~~~~P~~~LkgH~snV-C~ls~~--~~~-~~iSgSWD~TakvW~~~--------~l~~~l~gH~asVWA  145 (745)
T KOG0301|consen   78 GMDTTIIVFKLSQAEPLYTLKGHKSNV-CSLSIG--EDG-TLISGSWDSTAKVWRIG--------ELVYSLQGHTASVWA  145 (745)
T ss_pred             cccceEEEEecCCCCchhhhhccccce-eeeecC--CcC-ceEecccccceEEecch--------hhhcccCCcchheee
Confidence            6777777776655  456778999999 888855  565 49999999999999977        666779999999999


Q ss_pred             EEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCC
Q 008363          235 VSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDV  313 (568)
Q Consensus       235 v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~  313 (568)
                      +++-|.+       .++||+.|. |++|.-   ...+.+|.+|.+.|..+++.|++. +++++.||.|++|++       
T Consensus       146 v~~l~e~-------~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-------  207 (745)
T KOG0301|consen  146 VASLPEN-------TYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-------  207 (745)
T ss_pred             eeecCCC-------cEEeccCcceeeeccC---CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-------
Confidence            9999985       899999999 999985   377889999999999999998765 889999999999999       


Q ss_pred             CCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCce
Q 008363          314 PATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAI  393 (568)
Q Consensus       314 ~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i  393 (568)
                        +|+        ++..+.+|+.-|+++....++..+++++.|++++||+..  ...+...-..+-.+.+..  ..++-|
T Consensus       208 --~ge--------~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~--L~NgDI  273 (745)
T KOG0301|consen  208 --DGE--------VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKV--LLNGDI  273 (745)
T ss_pred             --cCc--------eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEE--eeCCCE
Confidence              454        457999999999999988889999999999999999986  333332222222233222  233445


Q ss_pred             EEcccCCCCCc
Q 008363          394 TVNTPLDNTPV  404 (568)
Q Consensus       394 ~~~~~~~~~~~  404 (568)
                      +++...+.+.+
T Consensus       274 vvg~SDG~VrV  284 (745)
T KOG0301|consen  274 VVGGSDGRVRV  284 (745)
T ss_pred             EEeccCceEEE
Confidence            55555555543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.86  E-value=1.9e-20  Score=178.12  Aligned_cols=253  Identities=15%  Similarity=0.241  Sum_probs=189.4

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      .-+|++.+. +++|+|..+         ..||+|+.|.+|.||.++.+.....+..                   ....+
T Consensus        77 v~GHt~~vL-Di~w~PfnD---------~vIASgSeD~~v~vW~IPe~~l~~~lte-------------------pvv~L  127 (472)
T KOG0303|consen   77 VCGHTAPVL-DIDWCPFND---------CVIASGSEDTKVMVWQIPENGLTRDLTE-------------------PVVEL  127 (472)
T ss_pred             ccCcccccc-ccccCccCC---------ceeecCCCCceEEEEECCCcccccCccc-------------------ceEEE
Confidence            468999666 999999887         8999999999999999998655544311                   12233


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG  254 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s  254 (568)
                      .||...| ..|+|+|... +.|++++.|.+|.||++.++      ..+.++. |...|+++.|+.+|      .+|+|++
T Consensus       128 ~gH~rrV-g~V~wHPtA~-NVLlsag~Dn~v~iWnv~tg------eali~l~-hpd~i~S~sfn~dG------s~l~Ttc  192 (472)
T KOG0303|consen  128 YGHQRRV-GLVQWHPTAP-NVLLSAGSDNTVSIWNVGTG------EALITLD-HPDMVYSMSFNRDG------SLLCTTC  192 (472)
T ss_pred             eecceeE-EEEeecccch-hhHhhccCCceEEEEeccCC------ceeeecC-CCCeEEEEEeccCC------ceeeeec
Confidence            8999999 9999998866 69999999999999999988      6666665 99999999999999      8999999


Q ss_pred             CCC-EEEEECCCCCcceeeeCCCCCC-eEEEEEcCCCCEEEEEe---CCCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363          255 HGG-LKFWDIRDPFRPLWDIHPAPKF-IYGLDWLPDPGCVILSF---DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH  329 (568)
Q Consensus       255 ~d~-v~lwD~~~~~~~~~~~~~h~~~-i~~l~~sp~~~~l~s~~---~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~  329 (568)
                      .|. |||||.+.+ ..+....+|.+. -..+.|..+|..+-+|-   .+..+-|||..++..+             -.+.
T Consensus       193 kDKkvRv~dpr~~-~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP-------------~~~~  258 (472)
T KOG0303|consen  193 KDKKVRVIDPRRG-TVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP-------------IALQ  258 (472)
T ss_pred             ccceeEEEcCCCC-cEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCc-------------ceeE
Confidence            999 999999988 777666777764 36778988998444442   3889999999776522             1123


Q ss_pred             EEecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccCCCCCccccc
Q 008363          330 LVNCSSFAIWSVQVSRLTGMVAYCS-ADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKK  408 (568)
Q Consensus       330 ~~~~h~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~k~  408 (568)
                      .+. ....|.---|.++.++|..++ .|+.|+.|++..        ..+..|++        +.+.+..|...+.+..|.
T Consensus       259 elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~--------d~P~~hyl--------n~f~S~epQRG~g~mPKR  321 (472)
T KOG0303|consen  259 ELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN--------EPPFVHYL--------NTFSSKEPQRGMGFMPKR  321 (472)
T ss_pred             Eec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecC--------CCceeEEe--------cccccCCccccccccccc
Confidence            444 344566667888887776655 799999999853        22334444        344455666677777777


Q ss_pred             ccccccccccccee
Q 008363          409 TVHDAGERSMRSFL  422 (568)
Q Consensus       409 ~~~~~g~~~~~~~~  422 (568)
                      .++...++++|.+.
T Consensus       322 Gl~Vs~cEI~rfyK  335 (472)
T KOG0303|consen  322 GLDVSKCEIARFYK  335 (472)
T ss_pred             cccchHHHHHHHHH
Confidence            76555554444444

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.86  E-value=1.9e-20  Score=179.08  Aligned_cols=220  Identities=18%  Similarity=0.205  Sum_probs=172.9

Q ss_pred             ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCCceE
Q 008363           97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDPRFV  162 (568)
Q Consensus        97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~~~v  162 (568)
                      +..+ .+.++.|.+++          ..+++++.|+.+++|++...+...+|.+|+.              ++++.+..+
T Consensus       217 Gs~g-~it~~d~d~~~----------~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRti  285 (459)
T KOG0288|consen  217 GSLG-NITSIDFDSDN----------KHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTI  285 (459)
T ss_pred             ccCC-CcceeeecCCC----------ceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchh
Confidence            4444 55599999999          7888899999999999999999999988876              789999999


Q ss_pred             EEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC
Q 008363          163 KLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA  240 (568)
Q Consensus       163 ~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~  240 (568)
                      +.|++..  |.+....-..  |..|..+    ...+++|..|++|++||.++.      .+......|. .|+++..+++
T Consensus       286 K~WDl~k~~C~kt~l~~S~--cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~------~~~~sv~~gg-~vtSl~ls~~  352 (459)
T KOG0288|consen  286 KLWDLQKAYCSKTVLPGSQ--CNDIVCS----ISDVISGHFDKKVRFWDIRSA------DKTRSVPLGG-RVTSLDLSMD  352 (459)
T ss_pred             hhhhhhhhheecccccccc--ccceEec----ceeeeecccccceEEEeccCC------ceeeEeecCc-ceeeEeeccC
Confidence            9999976  5443332111  1344432    458899999999999999977      7777776665 8999999999


Q ss_pred             CCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCC----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCC
Q 008363          241 ESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHP----APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPA  315 (568)
Q Consensus       241 ~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~----h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~  315 (568)
                      +      .-|.+++.|. +.+.|+++. .....+..    -....+.+.|||++.|+++|+.||.|+||++.        
T Consensus       353 g------~~lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~--------  417 (459)
T KOG0288|consen  353 G------LELLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVF--------  417 (459)
T ss_pred             C------eEEeeecCCCceeeeecccc-cEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEcc--------
Confidence            9      6677777776 999999986 33333321    12237899999999999999999999999993        


Q ss_pred             CCCCccCccccceEEEecCC--CCEEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363          316 TGKPFAGTKQQGLHLVNCSS--FAIWSVQVSRLTGMVAYCSADGTVHRFQ  363 (568)
Q Consensus       316 ~g~~~~~~~~~~l~~~~~h~--~~V~~l~~sp~~~~l~s~s~Dg~v~iwd  363 (568)
                      +|++.        ..+....  ..|+++.|+|.|..|++++.++.+.+|.
T Consensus       418 tgKlE--------~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  418 TGKLE--------KVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             CceEE--------EEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            46553        2333332  3699999999999999999999999993

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=9.3e-20  Score=176.02  Aligned_cols=222  Identities=21%  Similarity=0.409  Sum_probs=163.7

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceee-EEeccCCccCCCCceEEEeecceecccccCCcCccce
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMK-AIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPL  183 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~-~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~  183 (568)
                      |++|...+   .+....-+++|.|+.|-.|.|||+.-...+. .+..     |+.....+... ..-.....+|+..| .
T Consensus       178 C~ewld~~---~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~L-----Gs~~sk~~~k~-~k~~~~~~gHTdav-l  247 (463)
T KOG0270|consen  178 CIEWLDHG---SKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTL-----GSKASKKKKKK-GKRSNSASGHTDAV-L  247 (463)
T ss_pred             hhhhhhcC---CCCCCCcceEEEeccCceeEEeccccccccccceee-----chhhhhhhhhh-cccccccccchHHH-H
Confidence            66776542   1122333799999999999999987522111 0000     00000000000 00011125899999 9


Q ss_pred             EEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEE
Q 008363          184 TMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWD  262 (568)
Q Consensus       184 ~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD  262 (568)
                      +|+|+-.- ...||+||.|.+|++||+.++      +|..++..|...|.++.|+|..     +.+|++|+.|+ |.+.|
T Consensus       248 ~Ls~n~~~-~nVLaSgsaD~TV~lWD~~~g------~p~~s~~~~~k~Vq~l~wh~~~-----p~~LLsGs~D~~V~l~D  315 (463)
T KOG0270|consen  248 ALSWNRNF-RNVLASGSADKTVKLWDVDTG------KPKSSITHHGKKVQTLEWHPYE-----PSVLLSGSYDGTVALKD  315 (463)
T ss_pred             HHHhcccc-ceeEEecCCCceEEEEEcCCC------CcceehhhcCCceeEEEecCCC-----ceEEEeccccceEEeee
Confidence            99998442 358999999999999999988      8899998999999999999997     69999999999 99999


Q ss_pred             CCCCCc--ceeeeCCCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEE
Q 008363          263 IRDPFR--PLWDIHPAPKFIYGLDWLPDPGC-VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIW  339 (568)
Q Consensus       263 ~~~~~~--~~~~~~~h~~~i~~l~~sp~~~~-l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~  339 (568)
                      .|....  ..+.+   .+.|-.++|.|.... ++++..||+|+-+|+|+.       |        +++.++..|.++|.
T Consensus       316 ~R~~~~s~~~wk~---~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~-------~--------~~vwt~~AHd~~IS  377 (463)
T KOG0270|consen  316 CRDPSNSGKEWKF---DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP-------G--------KPVWTLKAHDDEIS  377 (463)
T ss_pred             ccCccccCceEEe---ccceEEEEecCCCceeEEEecCCceEEeeecCCC-------C--------CceeEEEeccCCcc
Confidence            996421  22334   677999999997654 555677999999999974       3        45579999999999


Q ss_pred             EEEEecCC-CEEEEEeCCCeEEEEEcCC
Q 008363          340 SVQVSRLT-GMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       340 ~l~~sp~~-~~l~s~s~Dg~v~iwd~~~  366 (568)
                      +|+++..- .+|+|++.|+.|++|++..
T Consensus       378 gl~~n~~~p~~l~t~s~d~~Vklw~~~~  405 (463)
T KOG0270|consen  378 GLSVNIQTPGLLSTASTDKVVKLWKFDV  405 (463)
T ss_pred             eEEecCCCCcceeeccccceEEEEeecC
Confidence            99999874 7899999999999999964

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=3.4e-21  Score=195.66  Aligned_cols=195  Identities=13%  Similarity=0.229  Sum_probs=172.3

Q ss_pred             EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363           94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML  173 (568)
Q Consensus        94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~  173 (568)
                      .+.+|.. .|.+|.|++..          .+|++|+.+|+|++||+...+.+++|                         
T Consensus        65 S~~~hes-pIeSl~f~~~E----------~LlaagsasgtiK~wDleeAk~vrtL-------------------------  108 (825)
T KOG0267|consen   65 SLTGHES-PIESLTFDTSE----------RLLAAGSASGTIKVWDLEEAKIVRTL-------------------------  108 (825)
T ss_pred             eeeccCC-cceeeecCcch----------hhhcccccCCceeeeehhhhhhhhhh-------------------------
Confidence            3689999 66699999998          79999999999999999998888776                         


Q ss_pred             ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363          174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA  253 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~  253 (568)
                       .||...+ .+|+|+  |-+.++++|+.|+.+++||++..      .|...+.+|...|..+.|+|+|      .+++++
T Consensus       109 -tgh~~~~-~sv~f~--P~~~~~a~gStdtd~~iwD~Rk~------Gc~~~~~s~~~vv~~l~lsP~G------r~v~~g  172 (825)
T KOG0267|consen  109 -TGHLLNI-TSVDFH--PYGEFFASGSTDTDLKIWDIRKK------GCSHTYKSHTRVVDVLRLSPDG------RWVASG  172 (825)
T ss_pred             -hccccCc-ceeeec--cceEEeccccccccceehhhhcc------CceeeecCCcceeEEEeecCCC------ceeecc
Confidence             8899997 999999  77899999999999999999965      7899999999999999999999      999999


Q ss_pred             cCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363          254 GHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN  332 (568)
Q Consensus       254 s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~  332 (568)
                      ++|. ++|||+..+ ..+..|..|.+.+.++.|+|..-.++.|+.|++|++||++++.                -+....
T Consensus       173 ~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe----------------~I~s~~  235 (825)
T KOG0267|consen  173 GEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE----------------VISSGK  235 (825)
T ss_pred             CCcceeeeeccccc-ccccccccccccccccccCchhhhhccCCCCceeeeeccceeE----------------EeeccC
Confidence            9998 999999987 7788899999999999999999999999999999999996543                112333


Q ss_pred             cCCCCEEEEEEecCCCEEEEEeCCC
Q 008363          333 CSSFAIWSVQVSRLTGMVAYCSADG  357 (568)
Q Consensus       333 ~h~~~V~~l~~sp~~~~l~s~s~Dg  357 (568)
                      .....|.++.|+|++..+++|..+.
T Consensus       236 ~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  236 PETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             CccCCceeeeecCCceeeecCchhh
Confidence            4467899999999999888887553

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=7.4e-20  Score=176.72  Aligned_cols=209  Identities=19%  Similarity=0.316  Sum_probs=165.7

Q ss_pred             ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363           97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG  176 (568)
Q Consensus        97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~  176 (568)
                      +|+..+. ++.|+..-.         ++||+|+.|.+|.+||+.++++..++                          ..
T Consensus       241 gHTdavl-~Ls~n~~~~---------nVLaSgsaD~TV~lWD~~~g~p~~s~--------------------------~~  284 (463)
T KOG0270|consen  241 GHTDAVL-ALSWNRNFR---------NVLASGSADKTVKLWDVDTGKPKSSI--------------------------TH  284 (463)
T ss_pred             cchHHHH-HHHhccccc---------eeEEecCCCceEEEEEcCCCCcceeh--------------------------hh
Confidence            6888555 999998776         89999999999999999999998886                          67


Q ss_pred             CcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC
Q 008363          177 GTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG  256 (568)
Q Consensus       177 h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d  256 (568)
                      |.+.| .+++|+|. ....|++|+.|++|.+.|.+....   ......+   .+.|-.++|.|..     +..|+++.+|
T Consensus       285 ~~k~V-q~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~---s~~~wk~---~g~VEkv~w~~~s-----e~~f~~~tdd  351 (463)
T KOG0270|consen  285 HGKKV-QTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSN---SGKEWKF---DGEVEKVAWDPHS-----ENSFFVSTDD  351 (463)
T ss_pred             cCCce-eEEEecCC-CceEEEeccccceEEeeeccCccc---cCceEEe---ccceEEEEecCCC-----ceeEEEecCC
Confidence            88999 99999976 447999999999999999985311   1111222   6779999999986     5788888899


Q ss_pred             C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363          257 G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPG-CVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS  334 (568)
Q Consensus       257 ~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~-~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h  334 (568)
                      | |+-+|+|....+++++..|.+.|.+|++++.-. +|++++.|+.|++|++....      ++.+.      -+.+.  
T Consensus       352 G~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~------~~~v~------~~~~~--  417 (463)
T KOG0270|consen  352 GTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS------PKSVK------EHSFK--  417 (463)
T ss_pred             ceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC------Ccccc------ccccc--
Confidence            9 999999999899999999999999999998654 56677889999999995422      21110      01111  


Q ss_pred             CCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCCCe
Q 008363          335 SFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       335 ~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~~~  368 (568)
                      -+...|+++.|+- .+|+.|+..+.++|||+.+..
T Consensus       418 ~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  418 LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             ccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence            1236677888875 678888889999999996543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=4.8e-19  Score=164.22  Aligned_cols=268  Identities=12%  Similarity=0.151  Sum_probs=176.4

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc-----eeeEEe--ccCC------------cc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR-----TMKAIY--LSSM------------KE  155 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~-----~~~~l~--~~~~------------~~  155 (568)
                      +.+|.+.+. +++|+.+|          +.||+++.|++|+||++....     +++.-.  +|..            +.
T Consensus        82 LKgH~~~vt-~~~FsSdG----------K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~  150 (420)
T KOG2096|consen   82 LKGHKKEVT-DVAFSSDG----------KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVS  150 (420)
T ss_pred             hhccCCcee-eeEEcCCC----------ceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEE
Confidence            578999555 99999999          899999999999999998721     221110  0100            00


Q ss_pred             CCCCceEEEeecce---e------c-----ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCce
Q 008363          156 GTDPRFVKLEPVFR---C------S-----MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRP  221 (568)
Q Consensus       156 ~~~~~~v~~~~~~~---~------~-----~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~  221 (568)
                      ......+.++....   .      .     .....|...+ ..+-  ...++.+|++++.|.+|.||++. +      +.
T Consensus       151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~-i~iG--iA~~~k~imsas~dt~i~lw~lk-G------q~  220 (420)
T KOG2096|consen  151 VKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDI-INIG--IAGNAKYIMSASLDTKICLWDLK-G------QL  220 (420)
T ss_pred             EccCCEEEEEEeeecccCCCCcccccccccccchhcccce-EEEe--ecCCceEEEEecCCCcEEEEecC-C------ce
Confidence            11111111111110   0      0     0001233333 2332  22667899999999999999998 4      67


Q ss_pred             eEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCC-------cceeeeCCCCCCeEEEEEcCCCCEEE
Q 008363          222 LLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPF-------RPLWDIHPAPKFIYGLDWLPDPGCVI  293 (568)
Q Consensus       222 ~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~-------~~~~~~~~h~~~i~~l~~sp~~~~l~  293 (568)
                      +..+......-+..+.+|+|      .+||+++--- |++|.+--..       ..+..+.+|...|..++|+++.+.++
T Consensus       221 L~~idtnq~~n~~aavSP~G------RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~v  294 (420)
T KOG2096|consen  221 LQSIDTNQSSNYDAAVSPDG------RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAV  294 (420)
T ss_pred             eeeeccccccccceeeCCCC------cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeE
Confidence            77776666667788899999      8999999887 9999874322       34477889999999999999999999


Q ss_pred             EEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccC
Q 008363          294 LSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDH  373 (568)
Q Consensus       294 s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~  373 (568)
                      +.+.||+++|||+.-.. ......+.++    ..-..+....+.-..+..+|.|..|+.+. ...|++|..++++.....
T Consensus       295 tvSkDG~wriwdtdVrY-~~~qDpk~Lk----~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~  368 (420)
T KOG2096|consen  295 TVSKDGKWRIWDTDVRY-EAGQDPKILK----EGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPEL  368 (420)
T ss_pred             EEecCCcEEEeeccceE-ecCCCchHhh----cCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhH
Confidence            99999999999985322 1101111111    00011112223334899999998777655 568999999887766554


Q ss_pred             CCCCcceeeeecccCCCCceEE
Q 008363          374 SRNRPMHFLCGSVTEDESAITV  395 (568)
Q Consensus       374 ~~~~~~~~~~~s~~~~~~~i~~  395 (568)
                      +.--...+.|.+++.+|..++.
T Consensus       369 e~~h~~~Is~is~~~~g~~~at  390 (420)
T KOG2096|consen  369 EDIHSTTISSISYSSDGKYIAT  390 (420)
T ss_pred             HHhhcCceeeEEecCCCcEEee
Confidence            4444556777788888876653

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.83  E-value=3.1e-19  Score=163.44  Aligned_cols=220  Identities=16%  Similarity=0.306  Sum_probs=167.3

Q ss_pred             ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCce-eeEEeccCCccCCCCceEEEeecceeccccc
Q 008363           97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRT-MKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC  175 (568)
Q Consensus        97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~-~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~  175 (568)
                      .+-+ .+.||.|.|++          ..||+-. |..|.+|++..+.. ...+....                     ..
T Consensus       121 eavg-~i~cvew~Pns----------~klasm~-dn~i~l~~l~ess~~vaev~ss~---------------------s~  167 (370)
T KOG1007|consen  121 EAVG-KINCVEWEPNS----------DKLASMD-DNNIVLWSLDESSKIVAEVLSSE---------------------SA  167 (370)
T ss_pred             HHhC-ceeeEEEcCCC----------CeeEEec-cCceEEEEcccCcchheeecccc---------------------cc
Confidence            3444 44599999998          5676554 88999999998554 33321111                     03


Q ss_pred             CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363          176 GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH  255 (568)
Q Consensus       176 ~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~  255 (568)
                      +|.... ++-+|+|+.+|..+++.+ |+++..||+++..     +....-.+|...|.++.|+|+..     .+||||++
T Consensus       168 e~~~~f-tsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~-----~~~sI~dAHgq~vrdlDfNpnkq-----~~lvt~gD  235 (370)
T KOG1007|consen  168 EMRHSF-TSGAWSPHHDGNQVATTS-DSTLQFWDLRTMK-----KNNSIEDAHGQRVRDLDFNPNKQ-----HILVTCGD  235 (370)
T ss_pred             ccccee-cccccCCCCccceEEEeC-CCcEEEEEccchh-----hhcchhhhhcceeeeccCCCCce-----EEEEEcCC
Confidence            455666 888999988998888876 8999999999762     23334468999999999999984     88999999


Q ss_pred             CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEccccccCCCC---------C-------C
Q 008363          256 GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPD-PGCVILSFDDGAMRIVSLLKAAYDVPA---------T-------G  317 (568)
Q Consensus       256 d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~-~~~l~s~~~dg~I~lwd~~~~~~~~~~---------~-------g  317 (568)
                      |+ |+|||+|....++..+.+|...|.++.|+|. .+.|++||.|..|.+|-....+.....         .       -
T Consensus       236 dgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~  315 (370)
T KOG1007|consen  236 DGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERV  315 (370)
T ss_pred             CccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhc
Confidence            99 9999999998999999999999999999995 467778899999999987654421100         0       0


Q ss_pred             CCccCccccceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEc
Q 008363          318 KPFAGTKQQGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQL  364 (568)
Q Consensus       318 ~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~  364 (568)
                      +++.   -..+.++..|...|++++|+.-. -.+|+-+.||.+.|=.+
T Consensus       316 kpL~---dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V  360 (370)
T KOG1007|consen  316 KPLQ---DGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV  360 (370)
T ss_pred             cccc---ccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence            1110   11245788999999999999765 67889999999988665

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.83  E-value=1.7e-19  Score=174.94  Aligned_cols=223  Identities=17%  Similarity=0.212  Sum_probs=179.8

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS  171 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~  171 (568)
                      +.....|.-.++ +|+++|+.          .++.+++.||+|.=|++.++....-+.....       +++..  ....
T Consensus       135 ~~~~~~H~~s~~-~vals~d~----------~~~fsask~g~i~kw~v~tgk~~~~i~~~~e-------v~k~~--~~~~  194 (479)
T KOG0299|consen  135 FRVIGKHQLSVT-SVALSPDD----------KRVFSASKDGTILKWDVLTGKKDRYIIERDE-------VLKSH--GNPL  194 (479)
T ss_pred             ceeeccccCcce-EEEeeccc----------cceeecCCCcceeeeehhcCcccccccccch-------hhhhc--cCCC
Confidence            444567887677 99999999          8999999999999999999775533211110       00000  0000


Q ss_pred             ccc-cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363          172 MLK-CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI  250 (568)
Q Consensus       172 ~~~-~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l  250 (568)
                      ... .+|...+ ++++.+  +||.+||+|+.|..|.||+.++.      ..+..|.+|.+.|.+++|-...      +-+
T Consensus       195 k~~r~~h~kei-l~~avS--~Dgkylatgg~d~~v~Iw~~~t~------ehv~~~~ghr~~V~~L~fr~gt------~~l  259 (479)
T KOG0299|consen  195 KESRKGHVKEI-LTLAVS--SDGKYLATGGRDRHVQIWDCDTL------EHVKVFKGHRGAVSSLAFRKGT------SEL  259 (479)
T ss_pred             Cccccccccee-EEEEEc--CCCcEEEecCCCceEEEecCccc------chhhcccccccceeeeeeecCc------cce
Confidence            011 3788998 999988  99999999999999999999977      8888999999999999998876      788


Q ss_pred             EEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363          251 LTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH  329 (568)
Q Consensus       251 as~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~  329 (568)
                      ++++.|. |++|++... ..+.++.+|++.|..|.-..-++.+-+|+.|+++++|++..                 ..-.
T Consensus       260 ys~s~Drsvkvw~~~~~-s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-----------------esql  321 (479)
T KOG0299|consen  260 YSASADRSVKVWSIDQL-SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-----------------ESQL  321 (479)
T ss_pred             eeeecCCceEEEehhHh-HHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-----------------ccee
Confidence            8999998 999999976 77788899999999999998888888888999999999932                 1123


Q ss_pred             EEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363          330 LVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       330 ~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~  368 (568)
                      .+.+|.+.+-|++|-. ...+++||.||.|.+|++...+
T Consensus       322 ifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKk  359 (479)
T KOG0299|consen  322 IFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKK  359 (479)
T ss_pred             eeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccC
Confidence            7889999999999975 4679999999999999996554

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.83  E-value=1.7e-19  Score=176.07  Aligned_cols=258  Identities=14%  Similarity=0.195  Sum_probs=195.7

Q ss_pred             EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc---------------eeeEEeccCC----c
Q 008363           94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR---------------TMKAIYLSSM----K  154 (568)
Q Consensus        94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~---------------~~~~l~~~~~----~  154 (568)
                      ..++|.. +|.++..+...          +.+.+|+. |-|+|||+....               .++......+    +
T Consensus       414 ~tL~HGE-vVcAvtIS~~t----------rhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLi  481 (705)
T KOG0639|consen  414 NTLAHGE-VVCAVTISNPT----------RHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLI  481 (705)
T ss_pred             hhhccCc-EEEEEEecCCc----------ceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEE
Confidence            3567777 88789998877          68888765 889999997621               1111111111    4


Q ss_pred             cCCCCceEEEeecceeccccc---CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCC
Q 008363          155 EGTDPRFVKLEPVFRCSMLKC---GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLP  231 (568)
Q Consensus       155 ~~~~~~~v~~~~~~~~~~~~~---~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~  231 (568)
                      .|.....+.+|+.........   ......|++++.+  ||.+..++++.||.|.|||+...      ..++.|.+|...
T Consensus       482 vGGeastlsiWDLAapTprikaeltssapaCyALa~s--pDakvcFsccsdGnI~vwDLhnq------~~VrqfqGhtDG  553 (705)
T KOG0639|consen  482 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS--PDAKVCFSCCSDGNIAVWDLHNQ------TLVRQFQGHTDG  553 (705)
T ss_pred             eccccceeeeeeccCCCcchhhhcCCcchhhhhhhcC--CccceeeeeccCCcEEEEEcccc------eeeecccCCCCC
Confidence            566688889999876322211   1222336888877  88999999999999999999977      889999999999


Q ss_pred             eeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccc
Q 008363          232 IRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAA  310 (568)
Q Consensus       232 V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~  310 (568)
                      +.||.++++|      ..|-||+-|. ||.||+|.+.+.. . +.....|.++.++|.+.+|++|-..+.+.|.......
T Consensus       554 ascIdis~dG------tklWTGGlDntvRcWDlregrqlq-q-hdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~  625 (705)
T KOG0639|consen  554 ASCIDISKDG------TKLWTGGLDNTVRCWDLREGRQLQ-Q-HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE  625 (705)
T ss_pred             ceeEEecCCC------ceeecCCCccceeehhhhhhhhhh-h-hhhhhhheecccCCCccceeeecccCcEEEEecCCcc
Confidence            9999999999      8999999998 9999999884333 1 1236779999999999999999999999988874311


Q ss_pred             cCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCC
Q 008363          311 YDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDE  390 (568)
Q Consensus       311 ~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~  390 (568)
                                       -..+.-|...|.++.|.+.|+++++.+.|..+..|..--+.-...  .......+|.-++.++
T Consensus       626 -----------------kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFq--skE~SsVlsCDIS~dd  686 (705)
T KOG0639|consen  626 -----------------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ--SKESSSVLSCDISFDD  686 (705)
T ss_pred             -----------------ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceee--ccccCcceeeeeccCc
Confidence                             146677999999999999999999999999999998865533222  1223345666788888


Q ss_pred             CceEEccc
Q 008363          391 SAITVNTP  398 (568)
Q Consensus       391 ~~i~~~~~  398 (568)
                      ..|+.++-
T Consensus       687 kyIVTGSG  694 (705)
T KOG0639|consen  687 KYIVTGSG  694 (705)
T ss_pred             eEEEecCC
Confidence            88877653

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.83  E-value=5.5e-19  Score=171.23  Aligned_cols=214  Identities=15%  Similarity=0.158  Sum_probs=164.3

Q ss_pred             ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363           97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG  176 (568)
Q Consensus        97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~  176 (568)
                      -|.+ .|++++|+|....        +++|+|..-|.|-+||+.+.+..            .++++          .+..
T Consensus       184 v~~~-Rit~l~fHPt~~~--------~lva~GdK~G~VG~Wn~~~~~~d------------~d~v~----------~f~~  232 (498)
T KOG4328|consen  184 VTDR-RITSLAFHPTENR--------KLVAVGDKGGQVGLWNFGTQEKD------------KDGVY----------LFTP  232 (498)
T ss_pred             eccc-ceEEEEecccCcc--------eEEEEccCCCcEEEEecCCCCCc------------cCceE----------Eecc
Confidence            4555 6779999998642        68999999999999999642211            11111          1278


Q ss_pred             CcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC
Q 008363          177 GTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG  256 (568)
Q Consensus       177 h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d  256 (568)
                      |..+| .++.|+|... .++++.|+||+|++-|+.....    ..+.........+.++.|+...      ..++.+..=
T Consensus       233 hs~~V-s~l~F~P~n~-s~i~ssSyDGtiR~~D~~~~i~----e~v~s~~~d~~~fs~~d~~~e~------~~vl~~~~~  300 (498)
T KOG4328|consen  233 HSGPV-SGLKFSPANT-SQIYSSSYDGTIRLQDFEGNIS----EEVLSLDTDNIWFSSLDFSAES------RSVLFGDNV  300 (498)
T ss_pred             CCccc-cceEecCCCh-hheeeeccCceeeeeeecchhh----HHHhhcCccceeeeeccccCCC------ccEEEeecc
Confidence            99999 9999998744 6899999999999999986622    3444443345667888888876      445555444


Q ss_pred             C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363          257 G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDP-GCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS  334 (568)
Q Consensus       257 ~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~-~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h  334 (568)
                      | +.+||+|+.......+.-|...|++|+++|.. .+|++++.|++++|||+|.+.      ++.      .++-....|
T Consensus       301 G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~------~K~------sp~lst~~H  368 (498)
T KOG4328|consen  301 GNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLR------GKA------SPFLSTLPH  368 (498)
T ss_pred             cceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhc------CCC------Ccceecccc
Confidence            5 99999999977787888888899999999965 567778889999999999865      322      122344569


Q ss_pred             CCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          335 SFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       335 ~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      ...|.++.|||.+..|+|.+.|..|+|||..
T Consensus       369 rrsV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  369 RRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             cceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            9999999999998779999999999999984

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=3.7e-18  Score=158.91  Aligned_cols=205  Identities=14%  Similarity=0.185  Sum_probs=160.5

Q ss_pred             ceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecce
Q 008363           90 PRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFR  169 (568)
Q Consensus        90 p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~  169 (568)
                      -.+.++.||...|+ +++.+|-+          ..+++++.|++|++||+...+|...+                     
T Consensus        91 kylRYF~GH~~~V~-sL~~sP~~----------d~FlS~S~D~tvrLWDlR~~~cqg~l---------------------  138 (311)
T KOG1446|consen   91 KYLRYFPGHKKRVN-SLSVSPKD----------DTFLSSSLDKTVRLWDLRVKKCQGLL---------------------  138 (311)
T ss_pred             ceEEEcCCCCceEE-EEEecCCC----------CeEEecccCCeEEeeEecCCCCceEE---------------------
Confidence            35777899999666 99999999          79999999999999999987776554                     


Q ss_pred             ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC---CCCeeEEEEccCCCCCCC
Q 008363          170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD---TLPIRAVSWAPAESDSDS  246 (568)
Q Consensus       170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h---~~~V~~v~~~p~~~~~~~  246 (568)
                           .-...   -..+|.  |.|-++|+|.....|+|||++.-    +..|..+|.-.   ....+.|.|+|+|     
T Consensus       139 -----~~~~~---pi~AfD--p~GLifA~~~~~~~IkLyD~Rs~----dkgPF~tf~i~~~~~~ew~~l~FS~dG-----  199 (311)
T KOG1446|consen  139 -----NLSGR---PIAAFD--PEGLIFALANGSELIKLYDLRSF----DKGPFTTFSITDNDEAEWTDLEFSPDG-----  199 (311)
T ss_pred             -----ecCCC---cceeEC--CCCcEEEEecCCCeEEEEEeccc----CCCCceeEccCCCCccceeeeEEcCCC-----
Confidence                 11112   346777  88989999988889999999865    23566666433   6678999999999     


Q ss_pred             CcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCe---EEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccC
Q 008363          247 ANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFI---YGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAG  322 (568)
Q Consensus       247 ~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i---~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~  322 (568)
                       ++|+.+...+ +++.|.-++ .....+..+...-   -..+|.||++++++|+.||+|.+|++.        +|..+  
T Consensus       200 -K~iLlsT~~s~~~~lDAf~G-~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~--------tg~~v--  267 (311)
T KOG1446|consen  200 -KSILLSTNASFIYLLDAFDG-TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLE--------TGKKV--  267 (311)
T ss_pred             -CEEEEEeCCCcEEEEEccCC-cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcC--------CCcEe--
Confidence             6777666666 999999888 5666666554432   578899999999999999999999994        46554  


Q ss_pred             ccccceEEEec-CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          323 TKQQGLHLVNC-SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       323 ~~~~~l~~~~~-h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                            ..+.+ +.+++.++.|+|.-.+++++  +..+.+|=..
T Consensus       268 ------~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~  303 (311)
T KOG1446|consen  268 ------AVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD  303 (311)
T ss_pred             ------eEecCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence                  57777 78999999999977666665  5678888653

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=2e-18  Score=165.19  Aligned_cols=191  Identities=16%  Similarity=0.243  Sum_probs=151.9

Q ss_pred             ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363          174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA  253 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~  253 (568)
                      +..|+..| +-+.|+  ++|.+||+|+.|.+..||.+.....   .+...++.+|..+|.-|.|+|+.      ++|++|
T Consensus       220 l~~htdEV-Wfl~FS--~nGkyLAsaSkD~Taiiw~v~~d~~---~kl~~tlvgh~~~V~yi~wSPDd------ryLlaC  287 (519)
T KOG0293|consen  220 LQDHTDEV-WFLQFS--HNGKYLASASKDSTAIIWIVVYDVH---FKLKKTLVGHSQPVSYIMWSPDD------RYLLAC  287 (519)
T ss_pred             HhhCCCcE-EEEEEc--CCCeeEeeccCCceEEEEEEecCcc---eeeeeeeecccCceEEEEECCCC------CeEEec
Confidence            37899999 999999  9999999999999999999865421   46678999999999999999999      899999


Q ss_pred             cCCC-EEEEECCCCCcceeee-CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363          254 GHGG-LKFWDIRDPFRPLWDI-HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV  331 (568)
Q Consensus       254 s~d~-v~lwD~~~~~~~~~~~-~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~  331 (568)
                      +.+. +.+||+.++ .....+ .+|...+.+++|.|||..+++|+.|++|..||+.         |+.+        ..+
T Consensus       288 g~~e~~~lwDv~tg-d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD---------gn~~--------~~W  349 (519)
T KOG0293|consen  288 GFDEVLSLWDVDTG-DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD---------GNIL--------GNW  349 (519)
T ss_pred             CchHheeeccCCcc-hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC---------cchh--------hcc
Confidence            9998 999999988 444333 3456778999999999999999999999999993         5443        344


Q ss_pred             ecCC-CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEc
Q 008363          332 NCSS-FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVN  396 (568)
Q Consensus       332 ~~h~-~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~  396 (568)
                      ++.+ ..|++++.++||+++++.+.|..|++++.++.....-.+.+...+-.  +++.++..+.++
T Consensus       350 ~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~--~iS~d~k~~Lvn  413 (519)
T KOG0293|consen  350 EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSF--SISKDGKLALVN  413 (519)
T ss_pred             cccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEE--EEcCCCcEEEEE
Confidence            4443 46999999999999999999999999999765433222222222222  466777666554

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.81  E-value=7.5e-19  Score=175.19  Aligned_cols=244  Identities=15%  Similarity=0.178  Sum_probs=177.7

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC----------------c-
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM----------------K-  154 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~----------------~-  154 (568)
                      -..+.+|++ .|.+|...|.|          .+||+|+.||+|+||.+.+|.|++++.-...                + 
T Consensus       393 ~lvyrGHtg-~Vr~iSvdp~G----------~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA  461 (733)
T KOG0650|consen  393 ALVYRGHTG-LVRSISVDPSG----------EWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVA  461 (733)
T ss_pred             eeeEeccCC-eEEEEEecCCc----------ceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEE
Confidence            345679999 55599999999          7999999999999999999999988754332                0 


Q ss_pred             ------------------------------cCCCCceEEEeecce------ecccccCCcCccceEEEEccCCCCCEEEE
Q 008363          155 ------------------------------EGTDPRFVKLEPVFR------CSMLKCGGTQSIPLTMEWSTSPPHDYLLA  198 (568)
Q Consensus       155 ------------------------------~~~~~~~v~~~~~~~------~~~~~~~h~~~V~~~v~~s~~~~g~~l~s  198 (568)
                                                    ....+..+..|....      ...+...|...| ..|.|+  ..|++|++
T Consensus       462 ~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i-~~vtWH--rkGDYlat  538 (733)
T KOG0650|consen  462 VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSI-RQVTWH--RKGDYLAT  538 (733)
T ss_pred             ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCcc-ceeeee--cCCceEEE
Confidence                                          001111222232221      111334577888 899999  89999998


Q ss_pred             EeCC---CeEEEEEccCCCCCCC-----C------------------------------ceeEEeeCCCCCeeEEEEccC
Q 008363          199 GCHD---GTVALWKFVASDSSID-----S------------------------------RPLLCFSADTLPIRAVSWAPA  240 (568)
Q Consensus       199 gs~D---g~I~iwd~~~~~~~~~-----~------------------------------~~~~~~~~h~~~V~~v~~~p~  240 (568)
                      ..-+   ..|.|.++........     +                              ..+..+......|..++.+|.
T Consensus       539 V~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~  618 (733)
T KOG0650|consen  539 VMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPN  618 (733)
T ss_pred             eccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCC
Confidence            7664   4577777764432100     0                              000111112345778888888


Q ss_pred             CCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCC
Q 008363          241 ESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKP  319 (568)
Q Consensus       241 ~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~  319 (568)
                      |      .-|+.++.|+ +..+|+.-..++...+.-|...+++|+|++.-.++++|+.||++.||.-.-       ...+
T Consensus       619 G------Dnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~V-------Y~Dl  685 (733)
T KOG0650|consen  619 G------DNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMV-------YNDL  685 (733)
T ss_pred             C------CeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeee-------ehhh
Confidence            8      6778888888 999999877789999999999999999999999999999999999996532       1222


Q ss_pred             ccCccccceEEEecCCCC----EEEEEEecCCCEEEEEeCCCeEEEE
Q 008363          320 FAGTKQQGLHLVNCSSFA----IWSVQVSRLTGMVAYCSADGTVHRF  362 (568)
Q Consensus       320 ~~~~~~~~l~~~~~h~~~----V~~l~~sp~~~~l~s~s~Dg~v~iw  362 (568)
                      ++..-..++..+.+|...    |..+.|+|...+|++++.||+|++|
T Consensus       686 ~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  686 LQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             hcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            222333677888999865    8999999999999999999999998

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.81  E-value=1.3e-18  Score=161.75  Aligned_cols=226  Identities=14%  Similarity=0.197  Sum_probs=163.5

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCcee------------eEE---ecc----------------
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTM------------KAI---YLS----------------  151 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~------------~~l---~~~----------------  151 (568)
                      ...+.|+|+|          ..|++-+.|..+++|+++..-..            ..+   .+.                
T Consensus        52 ~kgckWSPDG----------SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP  121 (406)
T KOG2919|consen   52 LKGCKWSPDG----------SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP  121 (406)
T ss_pred             hccceeCCCC----------ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC
Confidence            3478999999          79999999999999998751100            000   000                


Q ss_pred             -CC--ccCCCCceEEEeeccee----cccccCCcCcc--ceEEEEccCCCCCEEEEEeCCCeEEEEEcc-CCCCCCCCce
Q 008363          152 -SM--KEGTDPRFVKLEPVFRC----SMLKCGGTQSI--PLTMEWSTSPPHDYLLAGCHDGTVALWKFV-ASDSSIDSRP  221 (568)
Q Consensus       152 -~~--~~~~~~~~v~~~~~~~~----~~~~~~h~~~V--~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~-~~~~~~~~~~  221 (568)
                       +.  +..+.+..|++|+.++.    .-....|...+  ..+|+|+  |||.+|++|. ...|+++|+. .+..    .+
T Consensus       122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs--~DGeqlfaGy-krcirvFdt~RpGr~----c~  194 (406)
T KOG2919|consen  122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFS--PDGEQLFAGY-KRCIRVFDTSRPGRD----CP  194 (406)
T ss_pred             ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEec--CCCCeEeecc-cceEEEeeccCCCCC----Cc
Confidence             00  56778889999999872    22233343332  2689988  9999999887 5799999994 3321    22


Q ss_pred             eEEee-----CCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEE
Q 008363          222 LLCFS-----ADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS  295 (568)
Q Consensus       222 ~~~~~-----~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~  295 (568)
                      +....     +..+-|.+++|+|..+     ..+|.++... +-|+.-... .++..+.+|.+.|+.++|.++|+.|++|
T Consensus       195 vy~t~~~~k~gq~giisc~a~sP~~~-----~~~a~gsY~q~~giy~~~~~-~pl~llggh~gGvThL~~~edGn~lfsG  268 (406)
T KOG2919|consen  195 VYTTVTKGKFGQKGIISCFAFSPMDS-----KTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCEDGNKLFSG  268 (406)
T ss_pred             chhhhhcccccccceeeeeeccCCCC-----cceeeecccceeeeEecCCC-CceeeecccCCCeeeEEeccCcCeeccc
Confidence            22222     3367799999999973     7999999985 555544433 7888899999999999999999999999


Q ss_pred             eC-CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCC-CEEE--EEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          296 FD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSF-AIWS--VQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       296 ~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~-~V~~--l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                      +. |-.|-.||+|...               .++..+..|.. .-..  +...|++.+|++|+.||.|++||+..
T Consensus       269 aRk~dkIl~WDiR~~~---------------~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  269 ARKDDKILCWDIRYSR---------------DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             ccCCCeEEEEeehhcc---------------chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence            87 8889999998744               33345566654 2223  44557799999999999999999965

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.81  E-value=2e-18  Score=175.05  Aligned_cols=227  Identities=15%  Similarity=0.129  Sum_probs=184.8

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-----------------ccCCCCceEEEe
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-----------------KEGTDPRFVKLE  165 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-----------------~~~~~~~~v~~~  165 (568)
                      +++++.+|++          +.||+|..-|.|+||++...+.+..+..|..                 ++++.++.|.+.
T Consensus       462 ~R~~~vSp~g----------qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~  531 (1080)
T KOG1408|consen  462 FRALAVSPDG----------QHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVY  531 (1080)
T ss_pred             eEEEEECCCc----------ceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEE
Confidence            5699999999          8999999999999999998776666666654                 788999999999


Q ss_pred             ecce---ecccccCCcCccceEEEEccCCCC--CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC
Q 008363          166 PVFR---CSMLKCGGTQSIPLTMEWSTSPPH--DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA  240 (568)
Q Consensus       166 ~~~~---~~~~~~~h~~~V~~~v~~s~~~~g--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~  240 (568)
                      ++.+   ..+++.+|...| ++|.|.  ..|  ..+++++.|..|.+--.+.. ......+..+.......+++++..|.
T Consensus       532 Dv~rny~l~qtld~HSssI-TsvKFa--~~gln~~MiscGADksimFr~~qk~-~~g~~f~r~t~t~~ktTlYDm~Vdp~  607 (1080)
T KOG1408|consen  532 DVKRNYDLVQTLDGHSSSI-TSVKFA--CNGLNRKMISCGADKSIMFRVNQKA-SSGRLFPRHTQTLSKTTLYDMAVDPT  607 (1080)
T ss_pred             ecccccchhhhhcccccce-eEEEEe--ecCCceEEEeccCchhhheehhccc-cCceeccccccccccceEEEeeeCCC
Confidence            8876   677889999999 999998  445  68999999988764333211 10000111111112356899999999


Q ss_pred             CCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeC---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCC
Q 008363          241 ESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIH---PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPAT  316 (568)
Q Consensus       241 ~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~---~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~  316 (568)
                      .      .++++++.|. |+|||+.++ +....|.   +|.+..-.+...|.|-||++++.|.++.+||.        .+
T Consensus       608 ~------k~v~t~cQDrnirif~i~sg-Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df--------~s  672 (1080)
T KOG1408|consen  608 S------KLVVTVCQDRNIRIFDIESG-KQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDF--------VS  672 (1080)
T ss_pred             c------ceEEEEecccceEEEecccc-ceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEe--------cc
Confidence            8      8999999998 999999988 6666665   56677888999999999999999999999999        56


Q ss_pred             CCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          317 GKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       317 g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                      |+++        .++.||...|+.+.|.+|.+.|++.+.||.|.||.+..
T Consensus       673 gEcv--------A~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  673 GECV--------AQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             chhh--------hhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            8665        68999999999999999999999999999999999853

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=5.5e-19  Score=177.80  Aligned_cols=233  Identities=17%  Similarity=0.221  Sum_probs=191.3

Q ss_pred             ceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC--ceeeEEeccCC--------------
Q 008363           90 PRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL--RTMKAIYLSSM--------------  153 (568)
Q Consensus        90 p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~--~~~~~l~~~~~--------------  153 (568)
                      |.+.....|.. +|.++..+-++          +.|++++.|-+|++|+...+  -|+.++..|..              
T Consensus        64 ~~~asme~HsD-WVNDiiL~~~~----------~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~l  132 (735)
T KOG0308|consen   64 PYIASMEHHSD-WVNDIILCGNG----------KTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNEL  132 (735)
T ss_pred             chhhhhhhhHh-HHhhHHhhcCC----------CceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCcee
Confidence            34445556777 88899999998          79999999999999999886  57777776665              


Q ss_pred             -ccCCCCceEEEeecceec-------------ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCC
Q 008363          154 -KEGTDPRFVKLEPVFRCS-------------MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDS  219 (568)
Q Consensus       154 -~~~~~~~~v~~~~~~~~~-------------~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~  219 (568)
                       ++|+.++.|.+|++.+..             .+..|+..+| ++++-+  +.|..|++|+..+.|++||.++.      
T Consensus       133 vaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~si-YSLA~N--~t~t~ivsGgtek~lr~wDprt~------  203 (735)
T KOG0308|consen  133 VASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSI-YSLAMN--QTGTIIVSGGTEKDLRLWDPRTC------  203 (735)
T ss_pred             EEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccce-eeeecC--CcceEEEecCcccceEEeccccc------
Confidence             789999999999987421             1223888999 999977  78889999999999999999987      


Q ss_pred             ceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCC
Q 008363          220 RPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDD  298 (568)
Q Consensus       220 ~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d  298 (568)
                      +.+..+.||+..|.++..+++|      ..++|+|.|+ |++||+... +++.++..|...|+++..+|+-..+++|+.|
T Consensus       204 ~kimkLrGHTdNVr~ll~~dDG------t~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd  276 (735)
T KOG0308|consen  204 KKIMKLRGHTDNVRVLLVNDDG------TRLLSASSDGTIRLWDLGQQ-RCLATYIVHKEGVWALQSSPSFTHVYSGGRD  276 (735)
T ss_pred             cceeeeeccccceEEEEEcCCC------CeEeecCCCceEEeeecccc-ceeeeEEeccCceEEEeeCCCcceEEecCCC
Confidence            7778888999999999999999      8999999999 999999987 9999999999999999999999999999999


Q ss_pred             CcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          299 GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       299 g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      |.|+.-|++++.               .+. .+-....+|..+..+....-+-+++.|+.|+-|-+.
T Consensus       277 ~~i~~Tdl~n~~---------------~~t-lick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~  327 (735)
T KOG0308|consen  277 GNIYRTDLRNPA---------------KST-LICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE  327 (735)
T ss_pred             CcEEecccCCch---------------hhe-EeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence            999999998743               111 222234556666666444444666778888888764

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.79  E-value=5.6e-18  Score=170.31  Aligned_cols=247  Identities=15%  Similarity=0.169  Sum_probs=178.5

Q ss_pred             ceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeE--EeccCC--------------
Q 008363           90 PRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKA--IYLSSM--------------  153 (568)
Q Consensus        90 p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~--l~~~~~--------------  153 (568)
                      .++...++|.+ .|++++|-|..          ..|+++++|.++++||+.+..+...  +.+|..              
T Consensus        91 ~~lk~~~aH~n-AifDl~wapge----------~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~v  159 (720)
T KOG0321|consen   91 RQLKKPLAHKN-AIFDLKWAPGE----------SLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAV  159 (720)
T ss_pred             hhhcccccccc-eeEeeccCCCc----------eeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcc
Confidence            34566789999 66699999944          7999999999999999999777766  666654              


Q ss_pred             -ccCCCCceEEEeeccee---------cccccCC--------------------cCccc---eEEEEccCCCCCEEEEEe
Q 008363          154 -KEGTDPRFVKLEPVFRC---------SMLKCGG--------------------TQSIP---LTMEWSTSPPHDYLLAGC  200 (568)
Q Consensus       154 -~~~~~~~~v~~~~~~~~---------~~~~~~h--------------------~~~V~---~~v~~s~~~~g~~l~sgs  200 (568)
                       ..|..|..+.+|+...-         ......|                    ...|-   +.+.|-   |...||+++
T Consensus       160 F~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk---De~tlaSag  236 (720)
T KOG0321|consen  160 FCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK---DESTLASAG  236 (720)
T ss_pred             eeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe---ccceeeecc
Confidence             67889999999998641         1111122                    22220   344444   778999988


Q ss_pred             C-CCeEEEEEccCCCCCCCCceeEEee--CC---CCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCC-cceeee
Q 008363          201 H-DGTVALWKFVASDSSIDSRPLLCFS--AD---TLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPF-RPLWDI  273 (568)
Q Consensus       201 ~-Dg~I~iwd~~~~~~~~~~~~~~~~~--~h---~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~-~~~~~~  273 (568)
                      . |+.|+|||++.........+.....  -|   .-.+.++.....|     ..+||+|.++.|++|++++.. .++..+
T Consensus       237 a~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG-----t~L~AsCtD~sIy~ynm~s~s~sP~~~~  311 (720)
T KOG0321|consen  237 AADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG-----TYLFASCTDNSIYFYNMRSLSISPVAEF  311 (720)
T ss_pred             CCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC-----CeEEEEecCCcEEEEeccccCcCchhhc
Confidence            8 9999999998664433333333222  23   2346777777766     377888885559999998754 455555


Q ss_pred             CCCCCC-e-EEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC-CEE
Q 008363          274 HPAPKF-I-YGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT-GMV  350 (568)
Q Consensus       274 ~~h~~~-i-~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~-~~l  350 (568)
                      .++... + ..-..+||+.+|++|+.|...++|.+.+..               .+...+.||...|++++|.|.. .-+
T Consensus       312 sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e---------------~~~~~l~Ght~eVt~V~w~pS~~t~v  376 (720)
T KOG0321|consen  312 SGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE---------------APPALLLGHTREVTTVRWLPSATTPV  376 (720)
T ss_pred             cCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc---------------CChhhhhCcceEEEEEeeccccCCCc
Confidence            554321 1 233468999999999999999999997654               3345788999999999999974 568


Q ss_pred             EEEeCCCeEEEEEcCCCeee
Q 008363          351 AYCSADGTVHRFQLTAKAVE  370 (568)
Q Consensus       351 ~s~s~Dg~v~iwd~~~~~~~  370 (568)
                      ++|+.|..++||++..+-.+
T Consensus       377 ~TcSdD~~~kiW~l~~~l~e  396 (720)
T KOG0321|consen  377 ATCSDDFRVKIWRLSNGLEE  396 (720)
T ss_pred             eeeccCcceEEEeccCchhh
Confidence            88899999999999665433

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.79  E-value=1.4e-17  Score=152.96  Aligned_cols=166  Identities=20%  Similarity=0.306  Sum_probs=135.0

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC  175 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~  175 (568)
                      .+|.-+ |.++.|-|-..         +++.+++.|.+++|||..+.+....+                           
T Consensus        98 ~~Hky~-iss~~WyP~Dt---------GmFtssSFDhtlKVWDtnTlQ~a~~F---------------------------  140 (397)
T KOG4283|consen   98 NGHKYA-ISSAIWYPIDT---------GMFTSSSFDHTLKVWDTNTLQEAVDF---------------------------  140 (397)
T ss_pred             ccceee-eeeeEEeeecC---------ceeecccccceEEEeecccceeeEEe---------------------------
Confidence            356664 44899999664         79999999999999999997666543                           


Q ss_pred             CCcCccceEEEEccCCC-CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363          176 GGTQSIPLTMEWSTSPP-HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG  254 (568)
Q Consensus       176 ~h~~~V~~~v~~s~~~~-g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s  254 (568)
                      ...+.| ++-+|+|-.. ..+||+|..|-.|++.|+.++      .+-+++.+|...|.+|.|+|..     ..+||+|+
T Consensus       141 ~me~~V-YshamSp~a~sHcLiA~gtr~~~VrLCDi~SG------s~sH~LsGHr~~vlaV~Wsp~~-----e~vLatgs  208 (397)
T KOG4283|consen  141 KMEGKV-YSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG------SFSHTLSGHRDGVLAVEWSPSS-----EWVLATGS  208 (397)
T ss_pred             ecCcee-ehhhcChhhhcceEEEEecCCCcEEEEeccCC------cceeeeccccCceEEEEeccCc-----eeEEEecC
Confidence            223445 6667775443 558889999999999999987      8889999999999999999997     47789999


Q ss_pred             CCC-EEEEECCCCCcceeee--------------CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccc
Q 008363          255 HGG-LKFWDIRDPFRPLWDI--------------HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAA  310 (568)
Q Consensus       255 ~d~-v~lwD~~~~~~~~~~~--------------~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~  310 (568)
                      .|+ |++||+|....++..+              ..|.+.|+.++|..++.++++.+.|..+++|+..+..
T Consensus       209 aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  209 ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence            999 9999999764344333              2577889999999999999999999999999986543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.6e-17  Score=154.09  Aligned_cols=227  Identities=16%  Similarity=0.242  Sum_probs=164.7

Q ss_pred             eEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccce
Q 008363          104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPL  183 (568)
Q Consensus       104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~  183 (568)
                      .++.|++.|          .+||+|+.||.|.|||+.+...-+.+                          .+|..+| .
T Consensus        27 ~~~~Fs~~G----------~~lAvGc~nG~vvI~D~~T~~iar~l--------------------------saH~~pi-~   69 (405)
T KOG1273|consen   27 ECCQFSRWG----------DYLAVGCANGRVVIYDFDTFRIARML--------------------------SAHVRPI-T   69 (405)
T ss_pred             ceEEeccCc----------ceeeeeccCCcEEEEEccccchhhhh--------------------------hccccce-e
Confidence            389999999          79999999999999999996654444                          8899999 9


Q ss_pred             EEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-CEEEEE
Q 008363          184 TMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-GLKFWD  262 (568)
Q Consensus       184 ~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-~v~lwD  262 (568)
                      +++|+  ++|+.|+++|.|..|.+||+..+      .+++.+. ..++|+.+.|+|..     .+.++.+-.+ .-.+-+
T Consensus        70 sl~WS--~dgr~LltsS~D~si~lwDl~~g------s~l~rir-f~spv~~~q~hp~k-----~n~~va~~~~~sp~vi~  135 (405)
T KOG1273|consen   70 SLCWS--RDGRKLLTSSRDWSIKLWDLLKG------SPLKRIR-FDSPVWGAQWHPRK-----RNKCVATIMEESPVVID  135 (405)
T ss_pred             EEEec--CCCCEeeeecCCceeEEEeccCC------CceeEEE-ccCccceeeecccc-----CCeEEEEEecCCcEEEE
Confidence            99999  99999999999999999999977      6777663 47899999999987     2444444333 344555


Q ss_pred             CCCCCcceeeeCCC---CCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCC-CCE
Q 008363          263 IRDPFRPLWDIHPA---PKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS-FAI  338 (568)
Q Consensus       263 ~~~~~~~~~~~~~h---~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~-~~V  338 (568)
                      +..+...+......   ...-.+..|.+.|++|++|...|.+.+||..++                +++..++-.. ..|
T Consensus       136 ~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~----------------e~vas~rits~~~I  199 (405)
T KOG1273|consen  136 FSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL----------------ECVASFRITSVQAI  199 (405)
T ss_pred             ecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh----------------eeeeeeeechheee
Confidence            55432222111110   111134468999999999999999999999542                3445665555 789


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEEcCCCeee-ccCCC---C------CcceeeeecccCCCCceEEcc
Q 008363          339 WSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE-KDHSR---N------RPMHFLCGSVTEDESAITVNT  397 (568)
Q Consensus       339 ~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~-~~~~~---~------~~~~~~~~s~~~~~~~i~~~~  397 (568)
                      ..+.|+..|.+|+.-+.|..|+.|++...-.. ++...   +      ....+.|..++.+|.++.-++
T Consensus       200 K~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s  268 (405)
T KOG1273|consen  200 KQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGS  268 (405)
T ss_pred             eEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecc
Confidence            99999999999999999999999998632222 11000   0      112344556777877766554

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=5.4e-19  Score=188.82  Aligned_cols=215  Identities=18%  Similarity=0.364  Sum_probs=165.2

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC---ceeeEEeccCCccCCCCceEEEeecceecccccCCcC
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL---RTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ  179 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~---~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~  179 (568)
                      .+.++|.+.+.      ...++||.|..||.|.+||....   ...                       ..+.....|++
T Consensus        67 F~kL~W~~~g~------~~~GlIaGG~edG~I~ly~p~~~~~~~~~-----------------------~~la~~~~h~G  117 (1049)
T KOG0307|consen   67 FNKLAWGSYGS------HSHGLIAGGLEDGNIVLYDPASIIANASE-----------------------EVLATKSKHTG  117 (1049)
T ss_pred             ceeeeecccCC------CccceeeccccCCceEEecchhhccCcch-----------------------HHHhhhcccCC
Confidence            34899999884      22258999999999999998762   111                       11223378999


Q ss_pred             ccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEE-eeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-
Q 008363          180 SIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLC-FSADTLPIRAVSWAPAESDSDSANVILTAGHGG-  257 (568)
Q Consensus       180 ~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~-~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-  257 (568)
                      .| ..|+|++. .+++||+|+.||.|.|||+.....     +... -..-.+.|.+|+|+..-+     ++||+++.++ 
T Consensus       118 ~V-~gLDfN~~-q~nlLASGa~~geI~iWDlnn~~t-----P~~~~~~~~~~eI~~lsWNrkvq-----hILAS~s~sg~  185 (1049)
T KOG0307|consen  118 PV-LGLDFNPF-QGNLLASGADDGEILIWDLNKPET-----PFTPGSQAPPSEIKCLSWNRKVS-----HILASGSPSGR  185 (1049)
T ss_pred             ce-eeeecccc-CCceeeccCCCCcEEEeccCCcCC-----CCCCCCCCCcccceEeccchhhh-----HHhhccCCCCC
Confidence            99 99999955 345999999999999999985421     1111 112356799999999874     8999999998 


Q ss_pred             EEEEECCCCCcceeeeCCCCC--CeEEEEEcCCCC-EEEEEeCC---CcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363          258 LKFWDIRDPFRPLWDIHPAPK--FIYGLDWLPDPG-CVILSFDD---GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV  331 (568)
Q Consensus       258 v~lwD~~~~~~~~~~~~~h~~--~i~~l~~sp~~~-~l~s~~~d---g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~  331 (568)
                      +.|||+|.. +++..+..+.+  .+..|.|+|+.. .|++++.|   -.|.+||+|...               .++.++
T Consensus       186 ~~iWDlr~~-~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as---------------sP~k~~  249 (1049)
T KOG0307|consen  186 AVIWDLRKK-KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS---------------SPLKIL  249 (1049)
T ss_pred             ceeccccCC-CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC---------------Cchhhh
Confidence            999999987 77766665544  468999999864 34445443   359999998755               445788


Q ss_pred             ecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCCCeeeccCC
Q 008363          332 NCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTAKAVEKDHS  374 (568)
Q Consensus       332 ~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~~~~~~~~~  374 (568)
                      .+|...|.+|.|++.+ .+|++++.|+.|.+|+.+++++..+..
T Consensus       250 ~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p  293 (1049)
T KOG0307|consen  250 EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP  293 (1049)
T ss_pred             cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence            9999999999999987 999999999999999999987765433

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=6.6e-18  Score=156.72  Aligned_cols=172  Identities=15%  Similarity=0.179  Sum_probs=131.8

Q ss_pred             ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeE------------------------------
Q 008363          174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLL------------------------------  223 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~------------------------------  223 (568)
                      +.+|...| ++++|+  .+|..|++++.|++|+||+++.-... ..++++                              
T Consensus        82 LKgH~~~v-t~~~Fs--SdGK~lat~~~Dr~Ir~w~~~DF~~~-eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   82 LKGHKKEV-TDVAFS--SDGKKLATISGDRSIRLWDVRDFENK-EHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhccCCce-eeeEEc--CCCceeEEEeCCceEEEEecchhhhh-hhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence            48999999 999999  99999999999999999998743210 000000                              


Q ss_pred             -E-----------------------eeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCC
Q 008363          224 -C-----------------------FSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPK  278 (568)
Q Consensus       224 -~-----------------------~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~  278 (568)
                       .                       .+.|...|.++-....+      .+|+|++.|+ |.|||++ + +.+..+.....
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~------k~imsas~dt~i~lw~lk-G-q~L~~idtnq~  229 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA------KYIMSASLDTKICLWDLK-G-QLLQSIDTNQS  229 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc------eEEEEecCCCcEEEEecC-C-ceeeeeccccc
Confidence             0                       01123334444444444      8999999999 9999999 4 77777776666


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCe
Q 008363          279 FIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGT  358 (568)
Q Consensus       279 ~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~  358 (568)
                      .-+..+.||+|++|++++.--.|++|.+-...     .|..   .+...+..+.||...|..++|+++...++|.|.||+
T Consensus       230 ~n~~aavSP~GRFia~~gFTpDVkVwE~~f~k-----dG~f---qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~  301 (420)
T KOG2096|consen  230 SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTK-----DGTF---QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK  301 (420)
T ss_pred             cccceeeCCCCcEEEEecCCCCceEEEEEecc-----Ccch---hhhhhhheeccchhheeeeeeCCCcceeEEEecCCc
Confidence            67889999999999999998899999974322     2322   112345688999999999999999999999999999


Q ss_pred             EEEEEcC
Q 008363          359 VHRFQLT  365 (568)
Q Consensus       359 v~iwd~~  365 (568)
                      ++|||.+
T Consensus       302 wriwdtd  308 (420)
T KOG2096|consen  302 WRIWDTD  308 (420)
T ss_pred             EEEeecc
Confidence            9999984

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=6.6e-19  Score=188.17  Aligned_cols=254  Identities=18%  Similarity=0.281  Sum_probs=189.3

Q ss_pred             CCceeeccCCccce----eecccCcc-cCCCCCcccCCCCCCCcceEEEeeccCCceeeEEEEccCCCCcccccCcccEE
Q 008363           51 ANHQIYHGSERDSA----VCDVLGDF-LSKPSLVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYL  125 (568)
Q Consensus        51 ~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~l  125 (568)
                      ..|+...|......    ++.+.++= ....+.  ..+-.....+.+..+..|+|.| ..+.|++..+         ++|
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p--~~~~~~~~~~~la~~~~h~G~V-~gLDfN~~q~---------nlL  132 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDP--ASIIANASEEVLATKSKHTGPV-LGLDFNPFQG---------NLL  132 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecc--hhhccCcchHHHhhhcccCCce-eeeeccccCC---------cee
Confidence            44556667655444    34444321 111111  1222345667777888999955 4999999986         699


Q ss_pred             EEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeE
Q 008363          126 AVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTV  205 (568)
Q Consensus       126 as~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I  205 (568)
                      |+|+.||.|.|||+...+.-..+.                        ...-...| .+|+|+-. ....|++|+.+|.+
T Consensus       133 ASGa~~geI~iWDlnn~~tP~~~~------------------------~~~~~~eI-~~lsWNrk-vqhILAS~s~sg~~  186 (1049)
T KOG0307|consen  133 ASGADDGEILIWDLNKPETPFTPG------------------------SQAPPSEI-KCLSWNRK-VSHILASGSPSGRA  186 (1049)
T ss_pred             eccCCCCcEEEeccCCcCCCCCCC------------------------CCCCcccc-eEeccchh-hhHHhhccCCCCCc
Confidence            999999999999998844332210                        03345677 99999832 23478999999999


Q ss_pred             EEEEccCCCCCCCCceeEEeeCCCC--CeeEEEEccCCCCCCCCcEEEEEcCC-C---EEEEECCCCCcceeeeCCCCCC
Q 008363          206 ALWKFVASDSSIDSRPLLCFSADTL--PIRAVSWAPAESDSDSANVILTAGHG-G---LKFWDIRDPFRPLWDIHPAPKF  279 (568)
Q Consensus       206 ~iwd~~~~~~~~~~~~~~~~~~h~~--~V~~v~~~p~~~~~~~~~~las~s~d-~---v~lwD~~~~~~~~~~~~~h~~~  279 (568)
                      .|||++..      +++..+..|.+  .+..|+|+|+..     ..|+++++| +   |.+||+|....++.++.+|...
T Consensus       187 ~iWDlr~~------~pii~ls~~~~~~~~S~l~WhP~~a-----Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~G  255 (1049)
T KOG0307|consen  187 VIWDLRKK------KPIIKLSDTPGRMHCSVLAWHPDHA-----TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRG  255 (1049)
T ss_pred             eeccccCC------CcccccccCCCccceeeeeeCCCCc-----eeeeeecCCCCCceeEeecccccCCchhhhcccccc
Confidence            99999976      55655554444  478999999983     566666554 3   9999999988999999999999


Q ss_pred             eEEEEEcCCC-CEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC-CEEEEEeCCC
Q 008363          280 IYGLDWLPDP-GCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADG  357 (568)
Q Consensus       280 i~~l~~sp~~-~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg  357 (568)
                      |.+|.|++.+ ++|++++.|+.|.+|+..        +|+.+        ..+......+..+.|+|.. .+++.++.||
T Consensus       256 ilslsWc~~D~~lllSsgkD~~ii~wN~~--------tgEvl--------~~~p~~~nW~fdv~w~pr~P~~~A~asfdg  319 (1049)
T KOG0307|consen  256 ILSLSWCPQDPRLLLSSGKDNRIICWNPN--------TGEVL--------GELPAQGNWCFDVQWCPRNPSVMAAASFDG  319 (1049)
T ss_pred             eeeeccCCCCchhhhcccCCCCeeEecCC--------CceEe--------eecCCCCcceeeeeecCCCcchhhhheecc
Confidence            9999999966 888899999999999994        56554        5666677889999999986 5899999999


Q ss_pred             eEEEEEcCCCee
Q 008363          358 TVHRFQLTAKAV  369 (568)
Q Consensus       358 ~v~iwd~~~~~~  369 (568)
                      .|-|+.+.+...
T Consensus       320 kI~I~sl~~~~~  331 (1049)
T KOG0307|consen  320 KISIYSLQGTDT  331 (1049)
T ss_pred             ceeeeeeecCCc
Confidence            999999976653

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=4.8e-17  Score=151.06  Aligned_cols=203  Identities=17%  Similarity=0.193  Sum_probs=156.1

Q ss_pred             EEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCC
Q 008363          124 YLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDG  203 (568)
Q Consensus       124 ~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg  203 (568)
                      .|++|+....|.=+++.-..          ..........+.|.+.+    ..|.++| ++|+.+    +.++|+|+.|-
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~----------~~~~~s~~~~l~~lF~~----~aH~~si-tavAVs----~~~~aSGssDe   63 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEP----------KGCTDSVKPTLKPLFAF----SAHAGSI-TALAVS----GPYVASGSSDE   63 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCc----------cccccccceeeeccccc----cccccce-eEEEec----ceeEeccCCCC
Confidence            36678877777766665421          01122233345555544    8999999 999965    88999999999


Q ss_pred             eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEE
Q 008363          204 TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYG  282 (568)
Q Consensus       204 ~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~  282 (568)
                      +|+|||+...      ..+..+-.|.+.|+++.|.+.-    +-..|++|++|| |.+||.... ..+..+.+|.+.|+.
T Consensus        64 tI~IYDm~k~------~qlg~ll~HagsitaL~F~~~~----S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~  132 (362)
T KOG0294|consen   64 TIHIYDMRKR------KQLGILLSHAGSITALKFYPPL----SKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTD  132 (362)
T ss_pred             cEEEEeccch------hhhcceeccccceEEEEecCCc----chhheeeecCCCcEEEEEcCCe-EEeeeecccccccce
Confidence            9999999976      6777888999999999999986    223899999999 999999988 889999999999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 008363          283 LDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRF  362 (568)
Q Consensus       283 l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iw  362 (568)
                      |+.+|.++.-++.+.|+.+++|++        +.|+.-        ..+. -...-+.|.|+|.|.+++.++.+ .|-||
T Consensus       133 lsiHPS~KLALsVg~D~~lr~WNL--------V~Gr~a--------~v~~-L~~~at~v~w~~~Gd~F~v~~~~-~i~i~  194 (362)
T KOG0294|consen  133 LSIHPSGKLALSVGGDQVLRTWNL--------VRGRVA--------FVLN-LKNKATLVSWSPQGDHFVVSGRN-KIDIY  194 (362)
T ss_pred             eEecCCCceEEEEcCCceeeeehh--------hcCccc--------eeec-cCCcceeeEEcCCCCEEEEEecc-EEEEE
Confidence            999999999999999999999999        445432        1111 11222348999999888877755 68899


Q ss_pred             EcCCCeeeccCC
Q 008363          363 QLTAKAVEKDHS  374 (568)
Q Consensus       363 d~~~~~~~~~~~  374 (568)
                      .+.+..+..+..
T Consensus       195 q~d~A~v~~~i~  206 (362)
T KOG0294|consen  195 QLDNASVFREIE  206 (362)
T ss_pred             ecccHhHhhhhh
Confidence            998776665533

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.77  E-value=3.4e-17  Score=166.15  Aligned_cols=236  Identities=13%  Similarity=0.182  Sum_probs=180.9

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC----CceeeEEeccCC------------------------
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL----LRTMKAIYLSSM------------------------  153 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~----~~~~~~l~~~~~------------------------  153 (568)
                      +| ++.|.|..          ..|.....|.+|+|||+..    +++...++...-                        
T Consensus       327 ~I-A~~Fdet~----------~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF  395 (1080)
T KOG1408|consen  327 AI-ACQFDETT----------DKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCF  395 (1080)
T ss_pred             ee-EEEecCCC----------ceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccce
Confidence            56 88899888          6888888999999999887    444444432211                        


Q ss_pred             ccCCCCceEEEeecceeccc---------------------------------------ccCCcCccceEEEEccCCCCC
Q 008363          154 KEGTDPRFVKLEPVFRCSML---------------------------------------KCGGTQSIPLTMEWSTSPPHD  194 (568)
Q Consensus       154 ~~~~~~~~v~~~~~~~~~~~---------------------------------------~~~h~~~V~~~v~~s~~~~g~  194 (568)
                      ..++.|.+|++|+...|...                                       ..+....+ .+|+.+  |+|+
T Consensus       396 ~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~-R~~~vS--p~gq  472 (1080)
T KOG1408|consen  396 TTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGF-RALAVS--PDGQ  472 (1080)
T ss_pred             eEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccce-EEEEEC--CCcc
Confidence            45788889999987653210                                       11122345 688877  9999


Q ss_pred             EEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeee
Q 008363          195 YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDI  273 (568)
Q Consensus       195 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~  273 (568)
                      +||+|..-|+|+||++..-      .....+.+|...|.|+.|+...   -..++||+++.|. |+++|+...+.++.++
T Consensus       473 hLAsGDr~GnlrVy~Lq~l------~~~~~~eAHesEilcLeyS~p~---~~~kLLASasrdRlIHV~Dv~rny~l~qtl  543 (1080)
T KOG1408|consen  473 HLASGDRGGNLRVYDLQEL------EYTCFMEAHESEILCLEYSFPV---LTNKLLASASRDRLIHVYDVKRNYDLVQTL  543 (1080)
T ss_pred             eecccCccCceEEEEehhh------hhhhheecccceeEEEeecCch---hhhHhhhhccCCceEEEEecccccchhhhh
Confidence            9999999999999999855      6677888999999999998643   1237899999999 9999999887777888


Q ss_pred             CCCCCCeEEEEEcCCC-------------------------------------------------CEEEEEeCCCcEEEE
Q 008363          274 HPAPKFIYGLDWLPDP-------------------------------------------------GCVILSFDDGAMRIV  304 (568)
Q Consensus       274 ~~h~~~i~~l~~sp~~-------------------------------------------------~~l~s~~~dg~I~lw  304 (568)
                      .+|...|+++.|--.|                                                 .++++++.|..|+||
T Consensus       544 d~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif  623 (1080)
T KOG1408|consen  544 DGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIF  623 (1080)
T ss_pred             cccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEE
Confidence            7887777777765433                                                 788899999999999


Q ss_pred             EccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccC
Q 008363          305 SLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDH  373 (568)
Q Consensus       305 d~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~  373 (568)
                      |+.+        |+..     +.+..-.+|.+....+...|.|.||++.+.|.++.++|+.+++.....
T Consensus       624 ~i~s--------gKq~-----k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m  679 (1080)
T KOG1408|consen  624 DIES--------GKQV-----KSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM  679 (1080)
T ss_pred             eccc--------ccee-----eeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh
Confidence            9954        6554     112222356778888999999999999999999999999988766543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=6.6e-17  Score=157.03  Aligned_cols=266  Identities=15%  Similarity=0.175  Sum_probs=198.4

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC--CceeeEEeccCC---------------ccCCCCceEEE
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL--LRTMKAIYLSSM---------------KEGTDPRFVKL  164 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~--~~~~~~l~~~~~---------------~~~~~~~~v~~  164 (568)
                      .|.+|.|+|..          .+|++|+.||+++||.+..  ...++.+.-...               ..++...++..
T Consensus       215 ~I~sv~FHp~~----------plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ys  284 (514)
T KOG2055|consen  215 GITSVQFHPTA----------PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYS  284 (514)
T ss_pred             CceEEEecCCC----------ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEE
Confidence            45699999999          6999999999999999876  333443322211               34566677788


Q ss_pred             eeccee----cccccCCcC-ccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEcc
Q 008363          165 EPVFRC----SMLKCGGTQ-SIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAP  239 (568)
Q Consensus       165 ~~~~~~----~~~~~~h~~-~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p  239 (568)
                      |++.+-    .....|+.. .+ .....+  +++.+|+..+..|.|.|....++      ..+..++ -.+.|..++|+.
T Consensus       285 yDle~ak~~k~~~~~g~e~~~~-e~FeVS--hd~~fia~~G~~G~I~lLhakT~------eli~s~K-ieG~v~~~~fsS  354 (514)
T KOG2055|consen  285 YDLETAKVTKLKPPYGVEEKSM-ERFEVS--HDSNFIAIAGNNGHIHLLHAKTK------ELITSFK-IEGVVSDFTFSS  354 (514)
T ss_pred             eeccccccccccCCCCcccchh-heeEec--CCCCeEEEcccCceEEeehhhhh------hhhheee-eccEEeeEEEec
Confidence            887662    222334442 23 445545  88999999999999999998877      6666664 367799999999


Q ss_pred             CCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCC-eEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCC
Q 008363          240 AESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKF-IYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATG  317 (568)
Q Consensus       240 ~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~-i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g  317 (568)
                      ++      ..|+.++.+| |.+||++.. .++..+....+- -+++|.++++.+|++|+..|.|.|||..+.-       
T Consensus       355 ds------k~l~~~~~~GeV~v~nl~~~-~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~-------  420 (514)
T KOG2055|consen  355 DS------KELLASGGTGEVYVWNLRQN-SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF-------  420 (514)
T ss_pred             CC------cEEEEEcCCceEEEEecCCc-ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhh-------
Confidence            88      6666666666 999999988 777777543221 2788999999999999999999999974422       


Q ss_pred             CCccCccccceEEEecCCCCEEEEEEecCCCEEEEEe--CCCeEEEEEcCCCeeecc-C-CCCCcceeeeecccCCCCce
Q 008363          318 KPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCS--ADGTVHRFQLTAKAVEKD-H-SRNRPMHFLCGSVTEDESAI  393 (568)
Q Consensus       318 ~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s--~Dg~v~iwd~~~~~~~~~-~-~~~~~~~~~~~s~~~~~~~i  393 (568)
                         ..+..+++..+..-...|++|+|++++.+||.+|  .+..+++-.+.+..+-.. + ...++.+..|..+++.++.+
T Consensus       421 ---~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~l  497 (514)
T KOG2055|consen  421 ---ASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYL  497 (514)
T ss_pred             ---ccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceE
Confidence               2333366678887888999999999999988887  467889888876655432 2 24466788999999999999


Q ss_pred             EEcccCCCCCc
Q 008363          394 TVNTPLDNTPV  404 (568)
Q Consensus       394 ~~~~~~~~~~~  404 (568)
                      +++.....+++
T Consensus       498 AvGNe~grv~l  508 (514)
T KOG2055|consen  498 AVGNEAGRVHL  508 (514)
T ss_pred             EeecCCCceee
Confidence            99877666654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.77  E-value=1.3e-16  Score=161.92  Aligned_cols=240  Identities=14%  Similarity=0.183  Sum_probs=178.8

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc--ee-----eEEeccCC--------------
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR--TM-----KAIYLSSM--------------  153 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~--~~-----~~l~~~~~--------------  153 (568)
                      ..||++ .|+++.|+|.+          ..|++++.|.++.||.-.+..  -+     ..+.+...              
T Consensus       263 l~GHeD-WV~sv~W~p~~----------~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~i  331 (764)
T KOG1063|consen  263 LMGHED-WVYSVWWHPEG----------LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVI  331 (764)
T ss_pred             hcCccc-ceEEEEEccch----------hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEE
Confidence            359999 99999999999          689999999999999876631  11     11111110              


Q ss_pred             ccCCCCceEEEeecce-----ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCC-------------
Q 008363          154 KEGTDPRFVKLEPVFR-----CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDS-------------  215 (568)
Q Consensus       154 ~~~~~~~~v~~~~~~~-----~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~-------------  215 (568)
                      +.-+..+-+++|....     ......||.+.| ..|+|.  |.|.+|++.+.|.|-||+-.-..+.             
T Consensus       332 i~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V-~dv~W~--psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGy  408 (764)
T KOG1063|consen  332 IAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGV-KDVDWD--PSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGY  408 (764)
T ss_pred             EEecccCcEEEEeccCccceeeccccccccccc-eeeeec--CCCCEEEEeccccceeeecccccccceeeecccccccc
Confidence            2223444456666211     234557999999 999999  8899999999999988864321000             


Q ss_pred             --------------------------------------------------------------CC--------C-------
Q 008363          216 --------------------------------------------------------------SI--------D-------  218 (568)
Q Consensus       216 --------------------------------------------------------------~~--------~-------  218 (568)
                                                                                    +.        .       
T Consensus       409 Dl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~  488 (764)
T KOG1063|consen  409 DLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVC  488 (764)
T ss_pred             cceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccccccee
Confidence                                                                          00        0       


Q ss_pred             --------------------------CceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-----C-EEEEECCCC
Q 008363          219 --------------------------SRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-----G-LKFWDIRDP  266 (568)
Q Consensus       219 --------------------------~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-----~-v~lwD~~~~  266 (568)
                                                ...++.+.||...|++++.+|++      +++||+...     . |+||+..+.
T Consensus       489 ~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g------nliASaCKS~~~ehAvI~lw~t~~W  562 (764)
T KOG1063|consen  489 AETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG------NLIASACKSSLKEHAVIRLWNTANW  562 (764)
T ss_pred             eecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCC------CEEeehhhhCCccceEEEEEeccch
Confidence                                      00112344788899999999999      999998652     3 999999987


Q ss_pred             CcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecC
Q 008363          267 FRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL  346 (568)
Q Consensus       267 ~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~  346 (568)
                       ..+..+.+|.-.|+.|+||||+++|++.+.|+++.||.......     +.       -.+...+.|+.-||+..|+|+
T Consensus       563 -~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~-----~e-------~~fa~~k~HtRIIWdcsW~pd  629 (764)
T KOG1063|consen  563 -LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIK-----DE-------FRFACLKAHTRIIWDCSWSPD  629 (764)
T ss_pred             -hhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccc-----hh-------hhhccccccceEEEEcccCcc
Confidence             66678899999999999999999999999999999999843210     10       112346789999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcCCC
Q 008363          347 TGMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       347 ~~~l~s~s~Dg~v~iwd~~~~  367 (568)
                      +.+++|+|.|.+|++|.....
T Consensus       630 e~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  630 EKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             cceeEEecCCceEEEEeccCc
Confidence            999999999999999998654

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.77  E-value=4.4e-17  Score=150.45  Aligned_cols=244  Identities=16%  Similarity=0.205  Sum_probs=166.2

Q ss_pred             CCCCCCCCCceeeccCCc-ccee-ecccCcccCCCCCcccCCCCCCCcceEEEeeccCCceeeEEEEccCCCCcccccCc
Q 008363           44 EDEEPPTANHQIYHGSER-DSAV-CDVLGDFLSKPSLVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQR  121 (568)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~  121 (568)
                      ++..||.........+.. ...+ |...|+-..+....-.    ....|  .....|.+.+. +++|+.+|         
T Consensus        21 ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~----g~~~~--ka~~~~~~PvL-~v~Wsddg---------   84 (347)
T KOG0647|consen   21 EVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS----GQLVP--KAQQSHDGPVL-DVCWSDDG---------   84 (347)
T ss_pred             ecCCCcccchheeEeccccCceEEecccCCceEEEEEecC----Ccccc--hhhhccCCCeE-EEEEccCC---------
Confidence            344455555555444442 2222 4445555444432111    01112  12357888454 99999999         


Q ss_pred             ccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeC
Q 008363          122 LGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH  201 (568)
Q Consensus       122 ~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~  201 (568)
                       ..+++|+.|+.+++||+.+++....                           ..|.+.| .++.|-+......|++||.
T Consensus        85 -skVf~g~~Dk~~k~wDL~S~Q~~~v---------------------------~~Hd~pv-kt~~wv~~~~~~cl~TGSW  135 (347)
T KOG0647|consen   85 -SKVFSGGCDKQAKLWDLASGQVSQV---------------------------AAHDAPV-KTCHWVPGMNYQCLVTGSW  135 (347)
T ss_pred             -ceEEeeccCCceEEEEccCCCeeee---------------------------eecccce-eEEEEecCCCcceeEeccc
Confidence             7999999999999999999866544                           7899999 9999985555568999999


Q ss_pred             CCeEEEEEccCCCCCCC----------------------Ccee---------EEeeCCC----CCeeEEEEccCCCCCCC
Q 008363          202 DGTVALWKFVASDSSID----------------------SRPL---------LCFSADT----LPIRAVSWAPAESDSDS  246 (568)
Q Consensus       202 Dg~I~iwd~~~~~~~~~----------------------~~~~---------~~~~~h~----~~V~~v~~~p~~~~~~~  246 (568)
                      |.+|+.||++...+...                      .+-+         ..++.+.    -.++||+..++.     
T Consensus       136 DKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~-----  210 (347)
T KOG0647|consen  136 DKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDK-----  210 (347)
T ss_pred             ccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecC-----
Confidence            99999999986643100                      0000         1111122    247888888887     


Q ss_pred             CcEEEEEcCCC-EEEEECCCCC-cceeeeCCCCC---------CeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCC
Q 008363          247 ANVILTAGHGG-LKFWDIRDPF-RPLWDIHPAPK---------FIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPA  315 (568)
Q Consensus       247 ~~~las~s~d~-v~lwD~~~~~-~~~~~~~~h~~---------~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~  315 (568)
                       ..+|.|+-.| +.+..+..+. ..-++|..|..         .|++|+|+|....|++.|.||++.+||-...      
T Consensus       211 -~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar------  283 (347)
T KOG0647|consen  211 -DGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR------  283 (347)
T ss_pred             -CceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh------
Confidence             5668888877 7777776542 22244555542         4689999999999999999999999997431      


Q ss_pred             CCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEe
Q 008363          316 TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCS  354 (568)
Q Consensus       316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s  354 (568)
                                ..|.....|..+|++.+|+.+|.++|.+.
T Consensus       284 ----------~kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  284 ----------TKLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             ----------hhhhccCcCCCccceeEecCCCCEEEEEe
Confidence                      23456778999999999999998887764

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.77  E-value=2.7e-17  Score=165.47  Aligned_cols=238  Identities=15%  Similarity=0.238  Sum_probs=163.9

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD  202 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D  202 (568)
                      ++||.+..||.|.++|.......  +                  ...-+.....|...| +.+.|.  |....|++++.|
T Consensus        65 HiLavadE~G~i~l~dt~~~~fr--~------------------ee~~lk~~~aH~nAi-fDl~wa--pge~~lVsasGD  121 (720)
T KOG0321|consen   65 HILAVADEDGGIILFDTKSIVFR--L------------------EERQLKKPLAHKNAI-FDLKWA--PGESLLVSASGD  121 (720)
T ss_pred             ceEEEecCCCceeeecchhhhcc--h------------------hhhhhccccccccee-EeeccC--CCceeEEEccCC
Confidence            79999999999999998873222  0                  000012226799999 999999  555689999999


Q ss_pred             CeEEEEEccCCCCCCCCceeE--EeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCc-----------
Q 008363          203 GTVALWKFVASDSSIDSRPLL--CFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFR-----------  268 (568)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~--~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~-----------  268 (568)
                      .++++||+.+.      .+..  .+.+|.+.|.+++|.|..     +.+|++|+.|+ |.|||++....           
T Consensus       122 sT~r~Wdvk~s------~l~G~~~~~GH~~SvkS~cf~~~n-----~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~  190 (720)
T KOG0321|consen  122 STIRPWDVKTS------RLVGGRLNLGHTGSVKSECFMPTN-----PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIY  190 (720)
T ss_pred             ceeeeeeeccc------eeecceeecccccccchhhhccCC-----CcceeeccCCCcEEEEEEeccchhhHHHHhhhhh
Confidence            99999999977      4444  488999999999999997     59999999999 99999986530           


Q ss_pred             --------ce-------eeeCCCCCCeEE---EEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363          269 --------PL-------WDIHPAPKFIYG---LDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH  329 (568)
Q Consensus       269 --------~~-------~~~~~h~~~i~~---l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~  329 (568)
                              +.       .....+...|.+   +.+..|...|+++|. |+.|+|||+|+..-.  ..+++.      ...
T Consensus       191 ~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~--~r~ep~------~~~  262 (720)
T KOG0321|consen  191 GRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA--YRQEPR------GSD  262 (720)
T ss_pred             ccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc--cccCCC------ccc
Confidence                    00       011134444554   556678888999877 999999999875421  111111      112


Q ss_pred             EEecC---CCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec--cCCCCC-cceeeeecccCCCCceEEcccCCCC
Q 008363          330 LVNCS---SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK--DHSRNR-PMHFLCGSVTEDESAITVNTPLDNT  402 (568)
Q Consensus       330 ~~~~h---~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~--~~~~~~-~~~~~~~s~~~~~~~i~~~~~~~~~  402 (568)
                      .+..|   ...+.++.....|.+|++.+.|+.|++|++.+....-  ...... ...+.-..+++++..+..++.....
T Consensus       263 ~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~a  341 (720)
T KOG0321|consen  263 KYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQA  341 (720)
T ss_pred             CccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcce
Confidence            22333   3457778887778888888889999999997543321  112222 2233344667788777776554443

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.76  E-value=2.6e-17  Score=151.07  Aligned_cols=221  Identities=12%  Similarity=0.201  Sum_probs=162.1

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC  175 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~  175 (568)
                      ..|.-.+ ..+-|.|+..+     .+..+||+++  ..+|||.+...+....+                ..... .....
T Consensus        93 fd~~YP~-tK~~wiPd~~g-----~~pdlLATs~--D~LRlWri~~ee~~~~~----------------~~~L~-~~kns  147 (364)
T KOG0290|consen   93 FDHPYPV-TKLMWIPDSKG-----VYPDLLATSS--DFLRLWRIGDEESRVEL----------------QSVLN-NNKNS  147 (364)
T ss_pred             CCCCCCc-cceEecCCccc-----cCcchhhccc--CeEEEEeccCcCCceeh----------------hhhhc-cCccc
Confidence            4677744 49999998621     2336788765  47999999852111000                00000 00124


Q ss_pred             CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363          176 GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH  255 (568)
Q Consensus       176 ~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~  255 (568)
                      .+..++ ++++|+-. +-++|.+.+-|.+..|||+.++..   +.....+-+|...|++|+|...+     ..+|||.|.
T Consensus       148 ~~~aPl-TSFDWne~-dp~~igtSSiDTTCTiWdie~~~~---~~vkTQLIAHDKEV~DIaf~~~s-----~~~FASvga  217 (364)
T KOG0290|consen  148 EFCAPL-TSFDWNEV-DPNLIGTSSIDTTCTIWDIETGVS---GTVKTQLIAHDKEVYDIAFLKGS-----RDVFASVGA  217 (364)
T ss_pred             ccCCcc-cccccccC-CcceeEeecccCeEEEEEEeeccc---cceeeEEEecCcceeEEEeccCc-----cceEEEecC
Confidence            566788 99999865 457999999999999999997611   23455677999999999999965     489999999


Q ss_pred             CC-EEEEECCCCCcceeeeC-CC-CCCeEEEEEcCC-CCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363          256 GG-LKFWDIRDPFRPLWDIH-PA-PKFIYGLDWLPD-PGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL  330 (568)
Q Consensus       256 d~-v~lwD~~~~~~~~~~~~-~h-~~~i~~l~~sp~-~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~  330 (568)
                      || ||+||+|........+. +. ..+...++|++. .+++++-.. ...|.+.|+|...               .++..
T Consensus       218 DGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~---------------tpva~  282 (364)
T KOG0290|consen  218 DGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC---------------TPVAR  282 (364)
T ss_pred             CCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC---------------cceeh
Confidence            99 99999998753333333 22 456789999984 566666544 5679999998744               44578


Q ss_pred             EecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCC
Q 008363          331 VNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       331 ~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~  366 (568)
                      +.+|.+.|+.++|.|.. ..|+||+.|..+.|||+..
T Consensus       283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             hhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence            99999999999999985 8999999999999999964

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=2.9e-16  Score=159.22  Aligned_cols=236  Identities=17%  Similarity=0.246  Sum_probs=176.4

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceee-EEeccCCccCCCCceEEEeecceecccccCCcCc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMK-AIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQS  180 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~-~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~  180 (568)
                      .|.+++|+.+.          +.||++-.||.|.||++...-+.. .+.                         .+-...
T Consensus        27 ~I~slA~s~kS----------~~lAvsRt~g~IEiwN~~~~w~~~~vi~-------------------------g~~drs   71 (691)
T KOG2048|consen   27 EIVSLAYSHKS----------NQLAVSRTDGNIEIWNLSNNWFLEPVIH-------------------------GPEDRS   71 (691)
T ss_pred             ceEEEEEeccC----------CceeeeccCCcEEEEccCCCceeeEEEe-------------------------cCCCCc
Confidence            34499999998          789999999999999999844332 221                         122345


Q ss_pred             cceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EE
Q 008363          181 IPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LK  259 (568)
Q Consensus       181 V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~  259 (568)
                      | -+++|+   ++..|.+.+.+|+|.-||+.+.      ++...+....+.|++++.+|.+      ..++.|++|| +.
T Consensus        72 I-E~L~W~---e~~RLFS~g~sg~i~EwDl~~l------k~~~~~d~~gg~IWsiai~p~~------~~l~IgcddGvl~  135 (691)
T KOG2048|consen   72 I-ESLAWA---EGGRLFSSGLSGSITEWDLHTL------KQKYNIDSNGGAIWSIAINPEN------TILAIGCDDGVLY  135 (691)
T ss_pred             e-eeEEEc---cCCeEEeecCCceEEEEecccC------ceeEEecCCCcceeEEEeCCcc------ceEEeecCCceEE
Confidence            6 889999   5568999999999999999976      8888888889999999999998      8999999999 77


Q ss_pred             EEECCCCCcce-eeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe-cCCCC
Q 008363          260 FWDIRDPFRPL-WDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN-CSSFA  337 (568)
Q Consensus       260 lwD~~~~~~~~-~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~-~h~~~  337 (568)
                      +++........ ..+....+.|.++.|+|++..|++|+.||.|++||...        |..+. .-...+..+. +-..-
T Consensus       136 ~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~--------~~t~~-~~~~~~d~l~k~~~~i  206 (691)
T KOG2048|consen  136 DFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS--------GQTLH-IITMQLDRLSKREPTI  206 (691)
T ss_pred             EEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC--------CceEE-EeeecccccccCCceE
Confidence            77776553222 34445568899999999999999999999999999954        32220 0000000111 13346


Q ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccC
Q 008363          338 IWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPL  399 (568)
Q Consensus       338 V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~  399 (568)
                      ||+|.|-.+ ..|++|..-|+|.+||...+.+.+.. ..-..+.+|-+.+.+++.+.+....
T Consensus       207 VWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~-~~h~adVl~Lav~~~~d~vfsaGvd  266 (691)
T KOG2048|consen  207 VWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSH-SCHDADVLALAVADNEDRVFSAGVD  266 (691)
T ss_pred             EEEEEEeec-CcEEEecCCceEEEEcccCcchhhhh-hhhhcceeEEEEcCCCCeEEEccCC
Confidence            889988854 57999999999999999988877653 3334567777778877777664433

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.76  E-value=1.6e-17  Score=154.92  Aligned_cols=214  Identities=15%  Similarity=0.201  Sum_probs=159.3

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      ..+|.+.+. .++|+|..+         ++|++++.|.+|++|++++..|+..+-+.                       
T Consensus       131 ~~ghG~sIN-eik~~p~~~---------qlvls~SkD~svRlwnI~~~~Cv~VfGG~-----------------------  177 (385)
T KOG1034|consen  131 YRGHGGSIN-EIKFHPDRP---------QLVLSASKDHSVRLWNIQTDVCVAVFGGV-----------------------  177 (385)
T ss_pred             eeccCccch-hhhcCCCCC---------cEEEEecCCceEEEEeccCCeEEEEeccc-----------------------
Confidence            568888444 999999987         89999999999999999999999887554                       


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCc-------------------ee---EEeeCCCCCe
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSR-------------------PL---LCFSADTLPI  232 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~-------------------~~---~~~~~h~~~V  232 (568)
                      .||...| ++++|+  .+|++|++++.|.+|++|++.........+                   .+   .+-.-|...|
T Consensus       178 egHrdeV-LSvD~~--~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV  254 (385)
T KOG1034|consen  178 EGHRDEV-LSVDFS--LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV  254 (385)
T ss_pred             ccccCcE-EEEEEc--CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence            7999999 999999  889999999999999999998432210000                   01   1223477788


Q ss_pred             eEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCc-------------ceeeeCCCCCCeE--EEEEcCCCCEEEEEe
Q 008363          233 RAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFR-------------PLWDIHPAPKFIY--GLDWLPDPGCVILSF  296 (568)
Q Consensus       233 ~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~-------------~~~~~~~h~~~i~--~l~~sp~~~~l~s~~  296 (568)
                      .|+.|--        ++++|-|.++ |.+|....-..             .+..+.-....|.  ..+|.|-++.|+.|.
T Consensus       255 DCvrw~g--------d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gn  326 (385)
T KOG1034|consen  255 DCVRWFG--------DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGN  326 (385)
T ss_pred             HHHHHHh--------hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhcc
Confidence            8888764        4888888887 99998721111             1122322334454  456678889999999


Q ss_pred             CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          297 DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       297 ~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                      ..|.|++||+++....     ..       .-.+.......|...+|+.++.+|+..+.|++|.-||.
T Consensus       327 q~g~v~vwdL~~~ep~-----~~-------ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  327 QSGKVYVWDLDNNEPP-----KC-------TTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             CCCcEEEEECCCCCCc-----cC-------ceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            9999999999764411     00       01122223467999999999999999999999999986

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=4.2e-17  Score=152.98  Aligned_cols=198  Identities=16%  Similarity=0.239  Sum_probs=153.5

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD  202 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D  202 (568)
                      ..+|++...|+|+|||..+++.+..+                          .+|...+ ..+.|.-......+.+|+.|
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~f--------------------------k~~~~~~-N~vrf~~~ds~h~v~s~ssD   93 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEF--------------------------KGPPATT-NGVRFISCDSPHGVISCSSD   93 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhhee--------------------------cCCCCcc-cceEEecCCCCCeeEEeccC
Confidence            57899999999999999999988887                          5555555 66676632245689999999


Q ss_pred             CeEEEEEccCCCCCCCCceeEEeeCCC-CCeeEEEEccCCCCCCCCcEEEEEcC----CC-EEEEECCCCCcceee-eCC
Q 008363          203 GTVALWKFVASDSSIDSRPLLCFSADT-LPIRAVSWAPAESDSDSANVILTAGH----GG-LKFWDIRDPFRPLWD-IHP  275 (568)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~~~~~~las~s~----d~-v~lwD~~~~~~~~~~-~~~  275 (568)
                      |+|++||++....    .....+.+|. .+..+++.+-.+      +++++|..    +. |.+||+|...+++.. ...
T Consensus        94 G~Vr~wD~Rs~~e----~a~~~~~~~~~~~f~~ld~nck~------~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eS  163 (376)
T KOG1188|consen   94 GTVRLWDIRSQAE----SARISWTQQSGTPFICLDLNCKK------NIIACGTELTRSDASVVLWDVRSEQQLLRQLNES  163 (376)
T ss_pred             CeEEEEEeecchh----hhheeccCCCCCcceEeeccCcC------CeEEeccccccCceEEEEEEeccccchhhhhhhh
Confidence            9999999997633    5555666666 466777766565      78888865    45 999999988665644 458


Q ss_pred             CCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC-CEEEEE
Q 008363          276 APKFIYGLDWLPD-PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT-GMVAYC  353 (568)
Q Consensus       276 h~~~i~~l~~sp~-~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~-~~l~s~  353 (568)
                      |.+.|++|+|+|. ...|++|+.||.|.|||+.....+             ..|...-.|...|.++.|...+ +.|.+-
T Consensus       164 H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee-------------DaL~~viN~~sSI~~igw~~~~ykrI~cl  230 (376)
T KOG1188|consen  164 HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE-------------DALLHVINHGSSIHLIGWLSKKYKRIMCL  230 (376)
T ss_pred             ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch-------------hhHHHhhcccceeeeeeeecCCcceEEEE
Confidence            9999999999994 577888899999999999643211             2333444578889999999887 679999


Q ss_pred             eCCCeEEEEEcCCCeee
Q 008363          354 SADGTVHRFQLTAKAVE  370 (568)
Q Consensus       354 s~Dg~v~iwd~~~~~~~  370 (568)
                      +.+++..+|+++.+..+
T Consensus       231 TH~Etf~~~ele~~~~~  247 (376)
T KOG1188|consen  231 THMETFAIYELEDGSEE  247 (376)
T ss_pred             EccCceeEEEccCCChh
Confidence            99999999999877633

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=2.2e-17  Score=164.23  Aligned_cols=225  Identities=15%  Similarity=0.241  Sum_probs=172.5

Q ss_pred             EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363           94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML  173 (568)
Q Consensus        94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~  173 (568)
                      ....|.. +++++.|.|..          ..|++++.||.|.+|+++....              .....+.|+.++   
T Consensus       289 tl~s~~d-~ir~l~~~~se----------p~lit~sed~~lk~WnLqk~~~--------------s~~~~~epi~tf---  340 (577)
T KOG0642|consen  289 TLRSHDD-CIRALAFHPSE----------PVLITASEDGTLKLWNLQKAKK--------------SAEKDVEPILTF---  340 (577)
T ss_pred             eeecchh-hhhhhhcCCCC----------CeEEEeccccchhhhhhcccCC--------------ccccceeeeEEE---
Confidence            4567777 78899999998          5899999999999999944110              011123444444   


Q ss_pred             ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCC----CCceeEEeeCCCCCeeEEEEccCCCCCCCCcE
Q 008363          174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSI----DSRPLLCFSADTLPIRAVSWAPAESDSDSANV  249 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~----~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~  249 (568)
                       .+|.++| .|++..  +++.++++|+.||+|+.|++......-    ......++.||++.|+.+++++..      ..
T Consensus       341 -raH~gPV-l~v~v~--~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~------~~  410 (577)
T KOG0642|consen  341 -RAHEGPV-LCVVVP--SNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK------DR  410 (577)
T ss_pred             -ecccCce-EEEEec--CCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc------cc
Confidence             8999999 999988  889999999999999999775221111    113445788999999999999997      78


Q ss_pred             EEEEcCCC-EEEEECCCCCcceee-------------------------------------------eC--C-----CCC
Q 008363          250 ILTAGHGG-LKFWDIRDPFRPLWD-------------------------------------------IH--P-----APK  278 (568)
Q Consensus       250 las~s~d~-v~lwD~~~~~~~~~~-------------------------------------------~~--~-----h~~  278 (568)
                      |++++.|+ |++|+......++..                                           +.  .     -..
T Consensus       411 Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~  490 (577)
T KOG0642|consen  411 LLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYP  490 (577)
T ss_pred             eeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccC
Confidence            99999999 999987644211000                                           00  0     113


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCe
Q 008363          279 FIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGT  358 (568)
Q Consensus       279 ~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~  358 (568)
                      .++.+.++|.+.+.+++..|+.|+++|..        +|+++        +....|...|+++++.|+|.+|++++.|+.
T Consensus       491 ~in~vVs~~~~~~~~~~hed~~Ir~~dn~--------~~~~l--------~s~~a~~~svtslai~~ng~~l~s~s~d~s  554 (577)
T KOG0642|consen  491 QINKVVSHPTADITFTAHEDRSIRFFDNK--------TGKIL--------HSMVAHKDSVTSLAIDPNGPYLMSGSHDGS  554 (577)
T ss_pred             ccceEEecCCCCeeEecccCCceeccccc--------ccccc--------hheeeccceecceeecCCCceEEeecCCce
Confidence            46678889999999999999999999984        56554        677889999999999999999999999999


Q ss_pred             EEEEEcCCCeeecc
Q 008363          359 VHRFQLTAKAVEKD  372 (568)
Q Consensus       359 v~iwd~~~~~~~~~  372 (568)
                      +++|.+.......+
T Consensus       555 v~l~kld~k~~~~e  568 (577)
T KOG0642|consen  555 VRLWKLDVKTCVLE  568 (577)
T ss_pred             eehhhccchheeec
Confidence            99999965544433

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.75  E-value=4.5e-17  Score=168.39  Aligned_cols=196  Identities=13%  Similarity=0.103  Sum_probs=163.5

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      .+.+|+.++.|          ++.+.|+..|+|-+|++++|-....+...                       ..|...|
T Consensus       450 ~~~av~vs~CG----------NF~~IG~S~G~Id~fNmQSGi~r~sf~~~-----------------------~ah~~~V  496 (910)
T KOG1539|consen  450 NATAVCVSFCG----------NFVFIGYSKGTIDRFNMQSGIHRKSFGDS-----------------------PAHKGEV  496 (910)
T ss_pred             ceEEEEEeccC----------ceEEEeccCCeEEEEEcccCeeecccccC-----------------------ccccCce
Confidence            45589999999          89999999999999999997766554211                       5788898


Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF  260 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l  260 (568)
                       +.|+..  .-++.+++++.+|.++.||+...      .++..+. -...+.++..+...      .++|.+.+|- |++
T Consensus       497 -~gla~D--~~n~~~vsa~~~Gilkfw~f~~k------~l~~~l~-l~~~~~~iv~hr~s------~l~a~~~ddf~I~v  560 (910)
T KOG1539|consen  497 -TGLAVD--GTNRLLVSAGADGILKFWDFKKK------VLKKSLR-LGSSITGIVYHRVS------DLLAIALDDFSIRV  560 (910)
T ss_pred             -eEEEec--CCCceEEEccCcceEEEEecCCc------ceeeeec-cCCCcceeeeeehh------hhhhhhcCceeEEE
Confidence             888866  56778999999999999999966      4555553 24567888888877      7899999987 999


Q ss_pred             EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE
Q 008363          261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS  340 (568)
Q Consensus       261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~  340 (568)
                      +|+.+. +.++.+.+|...|++++|||||++|++++.|++|++||+.        +|.++         ..-.-..+.++
T Consensus       561 vD~~t~-kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp--------t~~lI---------D~~~vd~~~~s  622 (910)
T KOG1539|consen  561 VDVVTR-KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP--------TGTLI---------DGLLVDSPCTS  622 (910)
T ss_pred             EEchhh-hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEecc--------Cccee---------eeEecCCccee
Confidence            999987 8889999999999999999999999999999999999993        46544         22234578899


Q ss_pred             EEEecCCCEEEEEeCC-CeEEEEEc
Q 008363          341 VQVSRLTGMVAYCSAD-GTVHRFQL  364 (568)
Q Consensus       341 l~~sp~~~~l~s~s~D-g~v~iwd~  364 (568)
                      +.|+|+|.+|||...| .-|++|-=
T Consensus       623 ls~SPngD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  623 LSFSPNGDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             eEECCCCCEEEEEEecCceEEEEEc
Confidence            9999999999999999 67999964

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.75  E-value=2.3e-16  Score=163.24  Aligned_cols=179  Identities=17%  Similarity=0.240  Sum_probs=143.0

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe---eCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-E
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF---SADTLPIRAVSWAPAESDSDSANVILTAGHGG-L  258 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~---~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v  258 (568)
                      ++++.+  +-|++.+.|+..|+|-+|+++++      .....|   ..|.++|++++....+      +.+++++.+| +
T Consensus       452 ~av~vs--~CGNF~~IG~S~G~Id~fNmQSG------i~r~sf~~~~ah~~~V~gla~D~~n------~~~vsa~~~Gil  517 (910)
T KOG1539|consen  452 TAVCVS--FCGNFVFIGYSKGTIDRFNMQSG------IHRKSFGDSPAHKGEVTGLAVDGTN------RLLVSAGADGIL  517 (910)
T ss_pred             EEEEEe--ccCceEEEeccCCeEEEEEcccC------eeecccccCccccCceeEEEecCCC------ceEEEccCcceE
Confidence            566655  66889999999999999999977      455566   5899999999999888      8999999999 9


Q ss_pred             EEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCE
Q 008363          259 KFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAI  338 (568)
Q Consensus       259 ~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V  338 (568)
                      ++||.... ..+..+. -...+.++.++.....++++.+|-.|+++|..        +.+.        ++.|.||...|
T Consensus       518 kfw~f~~k-~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~--------t~kv--------vR~f~gh~nri  579 (910)
T KOG1539|consen  518 KFWDFKKK-VLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVV--------TRKV--------VREFWGHGNRI  579 (910)
T ss_pred             EEEecCCc-ceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEch--------hhhh--------hHHhhccccce
Confidence            99999976 4444442 24567889999888899999999999999993        3333        36889999999


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEE
Q 008363          339 WSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITV  395 (568)
Q Consensus       339 ~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~  395 (568)
                      ++++|||+|++|++++.|++|++||+-++.+..-..-......+  ++++.+..++.
T Consensus       580 td~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sl--s~SPngD~LAT  634 (910)
T KOG1539|consen  580 TDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSL--SFSPNGDFLAT  634 (910)
T ss_pred             eeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceee--EECCCCCEEEE
Confidence            99999999999999999999999999888765432222222222  67777777765

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.75  E-value=5.8e-17  Score=154.54  Aligned_cols=167  Identities=16%  Similarity=0.342  Sum_probs=136.5

Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCC-CCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSI-DSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA  253 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~  253 (568)
                      +||++.| +.++|+|+.| ..||+||.|.+|.||.+....... -..++..+.+|...|--|+|+|..     .++|+|+
T Consensus        78 ~GHt~~v-LDi~w~PfnD-~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA-----~NVLlsa  150 (472)
T KOG0303|consen   78 CGHTAPV-LDIDWCPFND-CVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA-----PNVLLSA  150 (472)
T ss_pred             cCccccc-cccccCccCC-ceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc-----hhhHhhc
Confidence            8999999 9999999866 699999999999999987554322 236788999999999999999997     5899999


Q ss_pred             cCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363          254 GHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN  332 (568)
Q Consensus       254 s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~  332 (568)
                      +.|. |.+|++.++ ..+.++. |++-|++++|+.+|..|++++.|..|||||.|.        |+.+        ..-.
T Consensus       151 g~Dn~v~iWnv~tg-eali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~--------~~~v--------~e~~  212 (472)
T KOG0303|consen  151 GSDNTVSIWNVGTG-EALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR--------GTVV--------SEGV  212 (472)
T ss_pred             cCCceEEEEeccCC-ceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCC--------CcEe--------eecc
Confidence            9998 999999998 6666665 999999999999999999999999999999964        6554        3445


Q ss_pred             cCCCC-EEEEEEecCCCEEEEEe---CCCeEEEEEcCC
Q 008363          333 CSSFA-IWSVQVSRLTGMVAYCS---ADGTVHRFQLTA  366 (568)
Q Consensus       333 ~h~~~-V~~l~~sp~~~~l~s~s---~Dg~v~iwd~~~  366 (568)
                      +|.+. -..+.|-.++.++.||-   .+..+-+||...
T Consensus       213 ~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~n  250 (472)
T KOG0303|consen  213 AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNN  250 (472)
T ss_pred             cccCCCcceeEEeccCceeeeccccccccceeccCccc
Confidence            66643 33456777777444432   578899998754

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.74  E-value=3.2e-17  Score=160.20  Aligned_cols=209  Identities=13%  Similarity=0.233  Sum_probs=160.2

Q ss_pred             CcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeec
Q 008363           88 ALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPV  167 (568)
Q Consensus        88 ~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~  167 (568)
                      ..|++....+....|+.++.++             .++++|+..+.|+|||+....+.+.+                   
T Consensus        70 ~Vp~~~k~~gd~~~Cv~~~s~S-------------~y~~sgG~~~~Vkiwdl~~kl~hr~l-------------------  117 (673)
T KOG4378|consen   70 EVPRVRKLTGDNAFCVACASQS-------------LYEISGGQSGCVKIWDLRAKLIHRFL-------------------  117 (673)
T ss_pred             ccceeeccccchHHHHhhhhcc-------------eeeeccCcCceeeehhhHHHHHhhhc-------------------
Confidence            3455555555544444344443             58999999999999999975555554                   


Q ss_pred             ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC-CCCeeEEEEccCCCCCCC
Q 008363          168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD-TLPIRAVSWAPAESDSDS  246 (568)
Q Consensus       168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-~~~V~~v~~~p~~~~~~~  246 (568)
                             .+|...| ++|.++  ....+||+++..|-|.|..+.++      .....|... ...|+-+.|+|..     
T Consensus       118 -------kdh~stv-t~v~YN--~~DeyiAsvs~gGdiiih~~~t~------~~tt~f~~~sgqsvRll~ys~sk-----  176 (673)
T KOG4378|consen  118 -------KDHQSTV-TYVDYN--NTDEYIASVSDGGDIIIHGTKTK------QKTTTFTIDSGQSVRLLRYSPSK-----  176 (673)
T ss_pred             -------cCCccee-EEEEec--CCcceeEEeccCCcEEEEecccC------ccccceecCCCCeEEEeeccccc-----
Confidence                   7899999 999998  66789999999999999999876      444455333 3346789999987     


Q ss_pred             CcEEEEEcCCC-EEEEECCCCCcce-eeeCCCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEccccccCCCCCCCCccCc
Q 008363          247 ANVILTAGHGG-LKFWDIRDPFRPL-WDIHPAPKFIYGLDWLPDPGC-VILSFDDGAMRIVSLLKAAYDVPATGKPFAGT  323 (568)
Q Consensus       247 ~~~las~s~d~-v~lwD~~~~~~~~-~~~~~h~~~i~~l~~sp~~~~-l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~  323 (568)
                      ..+|.+++++| |.+||+... .+. .....|..+...|||+|.... |++.|.|..|++||.+...        ..   
T Consensus       177 r~lL~~asd~G~VtlwDv~g~-sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~--------s~---  244 (673)
T KOG4378|consen  177 RFLLSIASDKGAVTLWDVQGM-SPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA--------ST---  244 (673)
T ss_pred             ceeeEeeccCCeEEEEeccCC-CcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc--------cc---
Confidence            36788889999 999999977 555 445589999999999997654 5566999999999996422        10   


Q ss_pred             cccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363          324 KQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       324 ~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~  367 (568)
                           ..+ ....+...++|+++|.+|+.|...|.|..||++..
T Consensus       245 -----~~l-~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~  282 (673)
T KOG4378|consen  245 -----DRL-TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST  282 (673)
T ss_pred             -----cee-eecCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence                 122 23457889999999999999999999999999654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.74  E-value=8.6e-17  Score=147.54  Aligned_cols=222  Identities=19%  Similarity=0.335  Sum_probs=159.5

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCC-------CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecc
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGN-------GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVF  168 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~d-------g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~  168 (568)
                      +-|..+-||.++-+|..+         ++|+++..+       -.+.||.++........                .+ .
T Consensus        59 f~h~agEvw~las~P~d~---------~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~----------------~t-l  112 (370)
T KOG1007|consen   59 FFHHAGEVWDLASSPFDQ---------RILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS----------------ST-L  112 (370)
T ss_pred             hhcCCcceehhhcCCCCC---------ceEEEEEeccCCCcceeeEEEEecccccCcccc----------------ch-h
Confidence            346666899999999886         788888653       24678998862211000                00 0


Q ss_pred             eecc-cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363          169 RCSM-LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA  247 (568)
Q Consensus       169 ~~~~-~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~  247 (568)
                      .|.. +...+-+.| .||.|.  |++..|++-. |..|.+|++..+......-+...-..|....++-+|+|..    +.
T Consensus       113 E~v~~Ldteavg~i-~cvew~--Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHH----dg  184 (370)
T KOG1007|consen  113 ECVASLDTEAVGKI-NCVEWE--PNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHH----DG  184 (370)
T ss_pred             hHhhcCCHHHhCce-eeEEEc--CCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCC----cc
Confidence            1111 112455677 999999  7788888776 8899999998663210000011112355667888999944    34


Q ss_pred             cEEEEEcCCCEEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEccccccCCCCCCCCccCcccc
Q 008363          248 NVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGC-VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQ  326 (568)
Q Consensus       248 ~~las~s~d~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~-l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~  326 (568)
                      +.+++.++.++..||+|+.......-..|...|..+.|+|+.++ |+++++||.|+|||+|+.+               .
T Consensus       185 nqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk---------------~  249 (370)
T KOG1007|consen  185 NQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK---------------F  249 (370)
T ss_pred             ceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC---------------c
Confidence            88999888889999999874333444578888999999998765 5667889999999999855               4


Q ss_pred             ceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCC
Q 008363          327 GLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       327 ~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~  366 (568)
                      ++..+.+|...||++.|+|.. .+|+++|.|..|.+|....
T Consensus       250 pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  250 PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence            457899999999999999984 8999999999999998854

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.73  E-value=3.1e-17  Score=164.37  Aligned_cols=212  Identities=17%  Similarity=0.275  Sum_probs=159.0

Q ss_pred             cCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCC
Q 008363           98 HNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGG  177 (568)
Q Consensus        98 h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h  177 (568)
                      .++..|.++.|.|-.+         ..||++++||.|+||.+..+......                   .+....+.+|
T Consensus       625 ~Ngt~vtDl~WdPFD~---------~rLAVa~ddg~i~lWr~~a~gl~e~~-------------------~tPe~~lt~h  676 (1012)
T KOG1445|consen  625 FNGTLVTDLHWDPFDD---------ERLAVATDDGQINLWRLTANGLPENE-------------------MTPEKILTIH  676 (1012)
T ss_pred             ccCceeeecccCCCCh---------HHeeecccCceEEEEEeccCCCCccc-------------------CCcceeeecc
Confidence            3445677999999877         79999999999999999874332211                   1122334789


Q ss_pred             cCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC
Q 008363          178 TQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG  257 (568)
Q Consensus       178 ~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~  257 (568)
                      ...| +++.|+|... +.|+++++|-+|+|||+.+.      .....+.+|++.|.+++|+|+|      ..+|+.+.|+
T Consensus       677 ~eKI-~slRfHPLAa-dvLa~asyd~Ti~lWDl~~~------~~~~~l~gHtdqIf~~AWSpdG------r~~AtVcKDg  742 (1012)
T KOG1445|consen  677 GEKI-TSLRFHPLAA-DVLAVASYDSTIELWDLANA------KLYSRLVGHTDQIFGIAWSPDG------RRIATVCKDG  742 (1012)
T ss_pred             cceE-EEEEecchhh-hHhhhhhccceeeeeehhhh------hhhheeccCcCceeEEEECCCC------cceeeeecCc
Confidence            9999 9999998754 69999999999999999977      6677889999999999999999      8999999999


Q ss_pred             -EEEEECCCCCcceeeeCCCC-CCeEEEEEcCCCCEEEEEeCC----CcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363          258 -LKFWDIRDPFRPLWDIHPAP-KFIYGLDWLPDPGCVILSFDD----GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV  331 (568)
Q Consensus       258 -v~lwD~~~~~~~~~~~~~h~-~~i~~l~~sp~~~~l~s~~~d----g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~  331 (568)
                       |++|..+....+++.-.+-- ..--.|.|.-+|+++++.+.|    ..|.+||.....      +.++.      ...+
T Consensus       743 ~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~------~~pl~------t~~l  810 (1012)
T KOG1445|consen  743 TLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD------LRPLY------TQVL  810 (1012)
T ss_pred             eEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc------CCcce------eeee
Confidence             99999998877776554322 223578898899999988764    568999986643      33321      1122


Q ss_pred             ecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEc
Q 008363          332 NCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQL  364 (568)
Q Consensus       332 ~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~  364 (568)
                      ....+ +.--.+.+|. -++++|-.|..|.+|++
T Consensus       811 Dvaps-~LvP~YD~Ds~~lfltGKGD~~v~~yEv  843 (1012)
T KOG1445|consen  811 DVAPS-PLVPHYDYDSNVLFLTGKGDRFVNMYEV  843 (1012)
T ss_pred             cccCc-cccccccCCCceEEEecCCCceEEEEEe
Confidence            21111 1222455564 56788889999999988

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.72  E-value=1.3e-16  Score=148.83  Aligned_cols=218  Identities=17%  Similarity=0.226  Sum_probs=164.5

Q ss_pred             cCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCC
Q 008363           98 HNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGG  177 (568)
Q Consensus        98 h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h  177 (568)
                      |+. ..+.++|+-+..      ..--+||+|+.-|.|+|.|+.++++...+                          .+|
T Consensus        88 ~~E-sfytcsw~yd~~------~~~p~la~~G~~GvIrVid~~~~~~~~~~--------------------------~gh  134 (385)
T KOG1034|consen   88 HDE-SFYTCSWSYDSN------TGNPFLAAGGYLGVIRVIDVVSGQCSKNY--------------------------RGH  134 (385)
T ss_pred             CCc-ceEEEEEEecCC------CCCeeEEeecceeEEEEEecchhhhccce--------------------------ecc
Confidence            444 556788876531      11148999999999999999998888776                          788


Q ss_pred             cCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe---eCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363          178 TQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF---SADTLPIRAVSWAPAESDSDSANVILTAG  254 (568)
Q Consensus       178 ~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~---~~h~~~V~~v~~~p~~~~~~~~~~las~s  254 (568)
                      ...| ..+.++|.. .+++++||.|.+|++|++++.      .++..|   .+|.+.|.++.|++++      .+|+|+|
T Consensus       135 G~sI-Neik~~p~~-~qlvls~SkD~svRlwnI~~~------~Cv~VfGG~egHrdeVLSvD~~~~g------d~i~ScG  200 (385)
T KOG1034|consen  135 GGSI-NEIKFHPDR-PQLVLSASKDHSVRLWNIQTD------VCVAVFGGVEGHRDEVLSVDFSLDG------DRIASCG  200 (385)
T ss_pred             Cccc-hhhhcCCCC-CcEEEEecCCceEEEEeccCC------eEEEEecccccccCcEEEEEEcCCC------CeeeccC
Confidence            8999 999999663 369999999999999999977      787776   4699999999999999      8999999


Q ss_pred             CCC-EEEEECCCCC-----------------cc-------ee---eeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 008363          255 HGG-LKFWDIRDPF-----------------RP-------LW---DIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSL  306 (568)
Q Consensus       255 ~d~-v~lwD~~~~~-----------------~~-------~~---~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~  306 (568)
                      .|. |++|++....                 ++       +.   +-.-|..+|-|+.|-  |.++++=+-++.|..|..
T Consensus       201 mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~p  278 (385)
T KOG1034|consen  201 MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKP  278 (385)
T ss_pred             CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEec
Confidence            999 9999998331                 00       00   122477778888887  788888888999999987


Q ss_pred             cccccCCC--CCCCCccCccccceEEEecCCCCEEEEEEecC--CCEEEEEeCCCeEEEEEcCCCe
Q 008363          307 LKAAYDVP--ATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL--TGMVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       307 ~~~~~~~~--~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~--~~~l~s~s~Dg~v~iwd~~~~~  368 (568)
                      -.......  ..++.    ....+..+......||-+.|+-|  +++||.|...|.|++|||....
T Consensus       279 gkl~e~~~~vkp~es----~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~e  340 (385)
T KOG1034|consen  279 GKLEESIHNVKPPES----ATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNE  340 (385)
T ss_pred             chhhhhhhccCCCcc----ceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCC
Confidence            43332200  00100    11234566667778888777655  7999999999999999997543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.72  E-value=1e-15  Score=146.82  Aligned_cols=168  Identities=18%  Similarity=0.293  Sum_probs=124.2

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC  175 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~  175 (568)
                      .-|....+..+.|.++..         +.||+|+.|..|+||-+.....-.           .+..+      .+...+.
T Consensus         9 ~wH~~~pv~s~dfq~n~~---------~~laT~G~D~~iriW~v~r~~~~~-----------~~~~V------~y~s~Ls   62 (434)
T KOG1009|consen    9 SWHDHEPVYSVDFQKNSL---------NKLATAGGDKDIRIWKVNRSEPGG-----------GDMKV------EYLSSLS   62 (434)
T ss_pred             EecCCCceEEEEeccCcc---------cceecccCccceeeeeeeecCCCC-----------CceeE------EEeeccc
Confidence            346666788999999884         599999999999999987633221           11111      2333448


Q ss_pred             CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCC----------CCCCceeEEeeCCCCCeeEEEEccCCCCCC
Q 008363          176 GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDS----------SIDSRPLLCFSADTLPIRAVSWAPAESDSD  245 (568)
Q Consensus       176 ~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~----------~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~  245 (568)
                      .|...| .++.|+  |+|++||+|+.+|.|.+|-......          .......+.+.+|...|+.++|+|++    
T Consensus        63 ~H~~aV-N~vRf~--p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~----  135 (434)
T KOG1009|consen   63 RHTRAV-NVVRFS--PDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS----  135 (434)
T ss_pred             CCccee-EEEEEc--CCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC----
Confidence            899999 999999  8899999999999999998762110          11123455778899999999999999    


Q ss_pred             CCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 008363          246 SANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDG  299 (568)
Q Consensus       246 ~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg  299 (568)
                        .++++++.|. +++||+..+ ..+..+..|...+..++|.|.++++++-+.|.
T Consensus       136 --~~l~s~s~dns~~l~Dv~~G-~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr  187 (434)
T KOG1009|consen  136 --NFLVSGSVDNSVRLWDVHAG-QLLAILDDHEHYVQGVAWDPLNQYVASKSSDR  187 (434)
T ss_pred             --ceeeeeeccceEEEEEeccc-eeEeeccccccccceeecchhhhhhhhhccCc
Confidence              8999999998 999999987 66666666666666666666554444444433

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=5.7e-16  Score=150.94  Aligned_cols=249  Identities=14%  Similarity=0.157  Sum_probs=184.0

Q ss_pred             EEEEEeCCC-cEEEEECCCCceeeEEeccCC--------------c-cCCCCceEEEeecceecccc--cCCcCccceEE
Q 008363          124 YLAVLLGNG-SLEVWEVPLLRTMKAIYLSSM--------------K-EGTDPRFVKLEPVFRCSMLK--CGGTQSIPLTM  185 (568)
Q Consensus       124 ~las~s~dg-~V~iwd~~~~~~~~~l~~~~~--------------~-~~~~~~~v~~~~~~~~~~~~--~~h~~~V~~~v  185 (568)
                      ++.+++.|- ++.+||+.+|..+..+.+...              + .......+.+|++..+....  .--.+.| .++
T Consensus         9 ~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v-~al   87 (476)
T KOG0646|consen    9 VCSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPV-HAL   87 (476)
T ss_pred             EEeccCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccce-eee
Confidence            344444444 489999999888877766521              1 11222355666665533222  2234556 888


Q ss_pred             EEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECC
Q 008363          186 EWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIR  264 (568)
Q Consensus       186 ~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~  264 (568)
                      +-+  |.|.+|+.|+..|.|++|.+.++      ..+..+.+|-..|+++.|+.++      .+|+|||.|+ |.+|++.
T Consensus        88 ~s~--n~G~~l~ag~i~g~lYlWelssG------~LL~v~~aHYQ~ITcL~fs~dg------s~iiTgskDg~V~vW~l~  153 (476)
T KOG0646|consen   88 ASS--NLGYFLLAGTISGNLYLWELSSG------ILLNVLSAHYQSITCLKFSDDG------SHIITGSKDGAVLVWLLT  153 (476)
T ss_pred             ecC--CCceEEEeecccCcEEEEEeccc------cHHHHHHhhccceeEEEEeCCC------cEEEecCCCccEEEEEEE
Confidence            866  88988888889999999999988      8888889999999999999999      8999999999 9999874


Q ss_pred             CC--------CcceeeeCCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363          265 DP--------FRPLWDIHPAPKFIYGLDWLPD--PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS  334 (568)
Q Consensus       265 ~~--------~~~~~~~~~h~~~i~~l~~sp~--~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h  334 (568)
                      .-        ..++..+..|.-+|+.+...+.  ..+|++++.|.++++||+.        .|.++        .++. -
T Consensus       154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS--------~g~LL--------lti~-f  216 (476)
T KOG0646|consen  154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS--------LGVLL--------LTIT-F  216 (476)
T ss_pred             eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEec--------cceee--------EEEe-c
Confidence            32        2677889999999999887764  4689999999999999994        36554        2332 4


Q ss_pred             CCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc--------CC--------CCCc-ceeeeecccCCCCceEEcc
Q 008363          335 SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD--------HS--------RNRP-MHFLCGSVTEDESAITVNT  397 (568)
Q Consensus       335 ~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~--------~~--------~~~~-~~~~~~s~~~~~~~i~~~~  397 (568)
                      ..++.+++.+|.+..+..|+.+|.|.+.++..-.-...        ..        .+.. ..+.|-+++.||..+.+|.
T Consensus       217 p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd  296 (476)
T KOG0646|consen  217 PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD  296 (476)
T ss_pred             CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC
Confidence            56889999999999999999999999998864331110        00        0111 2456889999999999987


Q ss_pred             cCCCCCc
Q 008363          398 PLDNTPV  404 (568)
Q Consensus       398 ~~~~~~~  404 (568)
                      ..+.+.+
T Consensus       297 ~dg~Vcv  303 (476)
T KOG0646|consen  297 EDGKVCV  303 (476)
T ss_pred             CCCCEEE
Confidence            6666643

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.71  E-value=1e-14  Score=145.26  Aligned_cols=224  Identities=9%  Similarity=0.057  Sum_probs=153.0

Q ss_pred             eEEEEccCCCCcccccCcccEE-EEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCCceEEEeecc
Q 008363          104 WDVKWKPYNAVDCKCKQRLGYL-AVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDPRFVKLEPVF  168 (568)
Q Consensus       104 ~~v~~sp~~~~~~~~~~~~~~l-as~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~~~v~~~~~~  168 (568)
                      +.++|+|++          ..+ ++++.++.|++||+.+++....+..+..              +.+..+..+.+|+..
T Consensus        34 ~~l~~~~dg----------~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~  103 (300)
T TIGR03866        34 RGITLSKDG----------KLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIE  103 (300)
T ss_pred             CceEECCCC----------CEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECC
Confidence            489999999          555 6777899999999998777665543221              233456678888775


Q ss_pred             ee--cccccCCcCccceEEEEccCCCCCEEEEEeCCC-eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCC
Q 008363          169 RC--SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDG-TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSD  245 (568)
Q Consensus       169 ~~--~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg-~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~  245 (568)
                      ..  ..... +...+ .+++|+  |+|.++++++.++ .+.+||..+.      ..+..+.. ...+..++|+|++    
T Consensus       104 ~~~~~~~~~-~~~~~-~~~~~~--~dg~~l~~~~~~~~~~~~~d~~~~------~~~~~~~~-~~~~~~~~~s~dg----  168 (300)
T TIGR03866       104 TRKVLAEIP-VGVEP-EGMAVS--PDGKIVVNTSETTNMAHFIDTKTY------EIVDNVLV-DQRPRFAEFTADG----  168 (300)
T ss_pred             CCeEEeEee-CCCCc-ceEEEC--CCCCEEEEEecCCCeEEEEeCCCC------eEEEEEEc-CCCccEEEECCCC----
Confidence            42  11111 12234 788988  8899999988775 4677898755      44443322 3346789999998    


Q ss_pred             CCcEE-EEEcCCC-EEEEECCCCCcceeeeCCC-----CC--CeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCC
Q 008363          246 SANVI-LTAGHGG-LKFWDIRDPFRPLWDIHPA-----PK--FIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPA  315 (568)
Q Consensus       246 ~~~~l-as~s~d~-v~lwD~~~~~~~~~~~~~h-----~~--~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~  315 (568)
                        .+| +++..++ |++||+.+. ..+..+..+     ..  ....++|+|++++++++ +.++.|.+||++.       
T Consensus       169 --~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~-------  238 (300)
T TIGR03866       169 --KELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT-------  238 (300)
T ss_pred             --CEEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC-------
Confidence              666 4555577 999999976 444333211     11  23568899999987664 5577899999943       


Q ss_pred             CCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEE-eCCCeEEEEEcCCCeeecc
Q 008363          316 TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYC-SADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~-s~Dg~v~iwd~~~~~~~~~  372 (568)
                       ++.+        ..+ .+...+++++|+|++.+|+++ +.+|.|++||+.+++....
T Consensus       239 -~~~~--------~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~  286 (300)
T TIGR03866       239 -YEVL--------DYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKS  286 (300)
T ss_pred             -CcEE--------EEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence             3332        222 244578999999999998876 4699999999988765443

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.71  E-value=7e-17  Score=158.00  Aligned_cols=204  Identities=15%  Similarity=0.212  Sum_probs=167.1

Q ss_pred             ceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecce
Q 008363           90 PRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFR  169 (568)
Q Consensus        90 p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~  169 (568)
                      |++..-+...+..+++++.+|+.          ++..+++.||.|.|||+.+...++.|                     
T Consensus       499 prikaeltssapaCyALa~spDa----------kvcFsccsdGnI~vwDLhnq~~Vrqf---------------------  547 (705)
T KOG0639|consen  499 PRIKAELTSSAPACYALAISPDA----------KVCFSCCSDGNIAVWDLHNQTLVRQF---------------------  547 (705)
T ss_pred             cchhhhcCCcchhhhhhhcCCcc----------ceeeeeccCCcEEEEEcccceeeecc---------------------
Confidence            33333333444456689999999          89999999999999999998777776                     


Q ss_pred             ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcE
Q 008363          170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV  249 (568)
Q Consensus       170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~  249 (568)
                           .||+..+ .||+.+  ++|..|-+|+-|.+|+-||++.+      +.+..+ ...+.|.++.++|.+      .+
T Consensus       548 -----qGhtDGa-scIdis--~dGtklWTGGlDntvRcWDlreg------rqlqqh-dF~SQIfSLg~cP~~------dW  606 (705)
T KOG0639|consen  548 -----QGHTDGA-SCIDIS--KDGTKLWTGGLDNTVRCWDLREG------RQLQQH-DFSSQIFSLGYCPTG------DW  606 (705)
T ss_pred             -----cCCCCCc-eeEEec--CCCceeecCCCccceeehhhhhh------hhhhhh-hhhhhheecccCCCc------cc
Confidence                 8999998 999988  99999999999999999999976      333322 236789999999999      89


Q ss_pred             EEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363          250 ILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       250 las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                      +|.|-..+ +.|......  ..+.++-|..-|.++.|.+.|+++++.+.|+.+..|....        |..+        
T Consensus       607 lavGMens~vevlh~skp--~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPy--------Gasi--------  668 (705)
T KOG0639|consen  607 LAVGMENSNVEVLHTSKP--EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY--------GASI--------  668 (705)
T ss_pred             eeeecccCcEEEEecCCc--cceeecccccEEEEEEecccCceeeecCchhhhhhccCcc--------ccce--------
Confidence            99999988 988887754  3455677899999999999999999999999999998843        4221        


Q ss_pred             EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                      .... -...|.++.++.+.+||+||+.|....||.+
T Consensus       669 Fqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  669 FQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             eecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            2222 4578999999999999999999998888876

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.71  E-value=1.7e-15  Score=148.58  Aligned_cols=221  Identities=17%  Similarity=0.227  Sum_probs=162.3

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-------ccCCCC-------ce
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-------KEGTDP-------RF  161 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-------~~~~~~-------~~  161 (568)
                      .+|++++- +++...+|           .|++|+.|..|..|| ...+.++.+.-+..       +.+..+       .+
T Consensus       284 ~aH~ggv~-~L~~lr~G-----------tllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~  350 (626)
T KOG2106|consen  284 HAHDGGVF-SLCMLRDG-----------TLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNF  350 (626)
T ss_pred             eecCCceE-EEEEecCc-----------cEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccce
Confidence            48999655 99999998           577799999999999 33333333322222       122222       11


Q ss_pred             EEEeecce-ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC
Q 008363          162 VKLEPVFR-CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA  240 (568)
Q Consensus       162 v~~~~~~~-~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~  240 (568)
                      +-...... +.....+|.... +.++-+  |+..++++++.|+.++||+  ..      +++.+. --..++.|+.|+|.
T Consensus       351 iL~Gt~~~~f~~~v~gh~del-wgla~h--ps~~q~~T~gqdk~v~lW~--~~------k~~wt~-~~~d~~~~~~fhps  418 (626)
T KOG2106|consen  351 ILQGTLENGFTLTVQGHGDEL-WGLATH--PSKNQLLTCGQDKHVRLWN--DH------KLEWTK-IIEDPAECADFHPS  418 (626)
T ss_pred             EEEeeecCCceEEEEecccce-eeEEcC--CChhheeeccCcceEEEcc--CC------ceeEEE-EecCceeEeeccCc
Confidence            11111111 445667899998 999966  7788999999999999999  22      333322 23677899999999


Q ss_pred             CCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCC
Q 008363          241 ESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKP  319 (568)
Q Consensus       241 ~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~  319 (568)
                      +       .+|.|...| ..+.|..+.  .+..++....++++++|+|+|.+|+.|+.|+.|+||-+..       .|..
T Consensus       419 g-------~va~Gt~~G~w~V~d~e~~--~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~-------~g~~  482 (626)
T KOG2106|consen  419 G-------VVAVGTATGRWFVLDTETQ--DLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA-------NGRK  482 (626)
T ss_pred             c-------eEEEeeccceEEEEecccc--eeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECC-------CCcE
Confidence            7       888888888 999999873  4444444488899999999999999999999999999854       4544


Q ss_pred             ccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          320 FAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       320 ~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                      +     ..+..  .|.++|+.+.|++|+++|.+-+.|-.|.+|..
T Consensus       483 y-----~r~~k--~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~  520 (626)
T KOG2106|consen  483 Y-----SRVGK--CSGSPITHLDWSSDSQFLVSNSGDYEILYWKP  520 (626)
T ss_pred             E-----EEeee--ecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence            4     22223  34489999999999999999999999999944

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.70  E-value=3.9e-16  Score=152.68  Aligned_cols=238  Identities=10%  Similarity=0.131  Sum_probs=165.0

Q ss_pred             CCCcEEEEECCCCceeeEEeccCC-----------------ccCCCCceEEEeeccee------cccccCCcCccceEEE
Q 008363          130 GNGSLEVWEVPLLRTMKAIYLSSM-----------------KEGTDPRFVKLEPVFRC------SMLKCGGTQSIPLTME  186 (568)
Q Consensus       130 ~dg~V~iwd~~~~~~~~~l~~~~~-----------------~~~~~~~~v~~~~~~~~------~~~~~~h~~~V~~~v~  186 (568)
                      ....++|||+........+..++.                 ++...+..+.+|....-      .....|.  .- +||+
T Consensus        10 ~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~-~Cv~   86 (673)
T KOG4378|consen   10 TGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NA-FCVA   86 (673)
T ss_pred             cCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hH-HHHh
Confidence            334689999877444433333322                 34556667776654321      1111122  21 4555


Q ss_pred             EccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCC
Q 008363          187 WSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRD  265 (568)
Q Consensus       187 ~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~  265 (568)
                      ..  ....++++|+..++|+|||++..      .+.+.+++|...|++|.++-..      .+||+++.+| |.|..+.+
T Consensus        87 ~~--s~S~y~~sgG~~~~Vkiwdl~~k------l~hr~lkdh~stvt~v~YN~~D------eyiAsvs~gGdiiih~~~t  152 (673)
T KOG4378|consen   87 CA--SQSLYEISGGQSGCVKIWDLRAK------LIHRFLKDHQSTVTYVDYNNTD------EYIASVSDGGDIIIHGTKT  152 (673)
T ss_pred             hh--hcceeeeccCcCceeeehhhHHH------HHhhhccCCcceeEEEEecCCc------ceeEEeccCCcEEEEeccc
Confidence            43  45579999999999999999965      6777889999999999999988      8999999999 99999998


Q ss_pred             CCcceeeeC-CCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEE
Q 008363          266 PFRPLWDIH-PAPKFIYGLDWLPDPGCVIL-SFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQV  343 (568)
Q Consensus       266 ~~~~~~~~~-~h~~~i~~l~~sp~~~~l~s-~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~  343 (568)
                      .. ....|. +....|.-+.|+|..++|+. ++++|.|.|||+....               ..++-...|..+...|+|
T Consensus       153 ~~-~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s---------------p~~~~~~~HsAP~~gicf  216 (673)
T KOG4378|consen  153 KQ-KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS---------------PIFHASEAHSAPCRGICF  216 (673)
T ss_pred             Cc-cccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC---------------cccchhhhccCCcCccee
Confidence            74 333332 33455679999998887665 5889999999994322               223455689999999999


Q ss_pred             ecCC-CEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccCCCC
Q 008363          344 SRLT-GMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNT  402 (568)
Q Consensus       344 sp~~-~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~  402 (568)
                      +|.. .+|++.+.|..|.+||...........  ....+...++.++|.++..|+..+.+
T Consensus       217 spsne~l~vsVG~Dkki~~yD~~s~~s~~~l~--y~~Plstvaf~~~G~~L~aG~s~G~~  274 (673)
T KOG4378|consen  217 SPSNEALLVSVGYDKKINIYDIRSQASTDRLT--YSHPLSTVAFSECGTYLCAGNSKGEL  274 (673)
T ss_pred             cCCccceEEEecccceEEEeecccccccceee--ecCCcceeeecCCceEEEeecCCceE
Confidence            9985 889999999999999997543322111  01113334677777777776544443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.70  E-value=7.6e-15  Score=144.14  Aligned_cols=244  Identities=14%  Similarity=0.153  Sum_probs=176.3

Q ss_pred             EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecc
Q 008363           93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSM  172 (568)
Q Consensus        93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~  172 (568)
                      ..+..+....|.+++|.+++           -+++|..+|.|.||+..+.+..+..                        
T Consensus       239 ~~fek~ekk~Vl~v~F~eng-----------dviTgDS~G~i~Iw~~~~~~~~k~~------------------------  283 (626)
T KOG2106|consen  239 GIFEKREKKFVLCVTFLENG-----------DVITGDSGGNILIWSKGTNRISKQV------------------------  283 (626)
T ss_pred             eccccccceEEEEEEEcCCC-----------CEEeecCCceEEEEeCCCceEEeEe------------------------
Confidence            33455666677899999998           4889999999999999876555444                        


Q ss_pred             cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCC----------------------------------CC
Q 008363          173 LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSS----------------------------------ID  218 (568)
Q Consensus       173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~----------------------------------~~  218 (568)
                        ..|.+.| +++.-.  .+| .|++|+.|..|..||-.-.+..                                  ..
T Consensus       284 --~aH~ggv-~~L~~l--r~G-tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~  357 (626)
T KOG2106|consen  284 --HAHDGGV-FSLCML--RDG-TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLE  357 (626)
T ss_pred             --eecCCce-EEEEEe--cCc-cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeec
Confidence              4788888 888866  676 6677999999999984322110                                  00


Q ss_pred             CceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC
Q 008363          219 SRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD  297 (568)
Q Consensus       219 ~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~  297 (568)
                      ........+|......++.+|+.      +.|+|++.|+ +++|+   ..++.++.. -..++.++.|+|.| .|+.|..
T Consensus       358 ~~f~~~v~gh~delwgla~hps~------~q~~T~gqdk~v~lW~---~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~  426 (626)
T KOG2106|consen  358 NGFTLTVQGHGDELWGLATHPSK------NQLLTCGQDKHVRLWN---DHKLEWTKI-IEDPAECADFHPSG-VVAVGTA  426 (626)
T ss_pred             CCceEEEEecccceeeEEcCCCh------hheeeccCcceEEEcc---CCceeEEEE-ecCceeEeeccCcc-eEEEeec
Confidence            01112334688889999999998      8999999999 99999   225554432 25678999999999 8999999


Q ss_pred             CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee-ccCCCC
Q 008363          298 DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE-KDHSRN  376 (568)
Q Consensus       298 dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~-~~~~~~  376 (568)
                      .|...+.|..+                 +.+-++.....++++++|+|+|.+||.|+.|+.|+||-+...... ......
T Consensus       427 ~G~w~V~d~e~-----------------~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~  489 (626)
T KOG2106|consen  427 TGRWFVLDTET-----------------QDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC  489 (626)
T ss_pred             cceEEEEeccc-----------------ceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee
Confidence            99999999954                 112233334789999999999999999999999999998754322 111111


Q ss_pred             CcceeeeecccCCCCceEEcccCCCCCcc
Q 008363          377 RPMHFLCGSVTEDESAITVNTPLDNTPVP  405 (568)
Q Consensus       377 ~~~~~~~~s~~~~~~~i~~~~~~~~~~~~  405 (568)
                      ....+.---++.|+..+...+-...+-+.
T Consensus       490 ~gs~ithLDwS~Ds~~~~~~S~d~eiLyW  518 (626)
T KOG2106|consen  490 SGSPITHLDWSSDSQFLVSNSGDYEILYW  518 (626)
T ss_pred             cCceeEEeeecCCCceEEeccCceEEEEE
Confidence            22222222578888888877766666443

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.70  E-value=1.4e-15  Score=141.67  Aligned_cols=228  Identities=16%  Similarity=0.230  Sum_probs=172.8

Q ss_pred             ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------------ccCCC
Q 008363           97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------------KEGTD  158 (568)
Q Consensus        97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------------~~~~~  158 (568)
                      --.++.|++.+|-+.-   ....+...++|+.+.+.-|++||.-+|+....+..-..                  +-...
T Consensus       101 ~~eg~tvydy~wYs~M---~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy  177 (406)
T KOG2919|consen  101 YQEGETVYDYCWYSRM---KSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY  177 (406)
T ss_pred             eccCCEEEEEEeeecc---ccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc
Confidence            3456688899997432   11123337999999999999999999876655533222                  33445


Q ss_pred             CceEEEeecce----e------cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC
Q 008363          159 PRFVKLEPVFR----C------SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD  228 (568)
Q Consensus       159 ~~~v~~~~~~~----~------~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h  228 (568)
                      .+.|++.+..+    |      ..-..+..+.| .|++|+|. +...++.|+.-.++-|+.-...      .++..+.+|
T Consensus       178 krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii-sc~a~sP~-~~~~~a~gsY~q~~giy~~~~~------~pl~llggh  249 (406)
T KOG2919|consen  178 KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII-SCFAFSPM-DSKTLAVGSYGQRVGIYNDDGR------RPLQLLGGH  249 (406)
T ss_pred             cceEEEeeccCCCCCCcchhhhhccccccccee-eeeeccCC-CCcceeeecccceeeeEecCCC------Cceeeeccc
Confidence            66677766643    1      11234557777 99999977 3459999999999999987755      888889999


Q ss_pred             CCCeeEEEEccCCCCCCCCcEEEEEcCC--CEEEEECCCCCcceeeeCCCCC-CeEEE--EEcCCCCEEEEEeCCCcEEE
Q 008363          229 TLPIRAVSWAPAESDSDSANVILTAGHG--GLKFWDIRDPFRPLWDIHPAPK-FIYGL--DWLPDPGCVILSFDDGAMRI  303 (568)
Q Consensus       229 ~~~V~~v~~~p~~~~~~~~~~las~s~d--~v~lwD~~~~~~~~~~~~~h~~-~i~~l--~~sp~~~~l~s~~~dg~I~l  303 (568)
                      .+.|+.+.|+++|      +.|.+|...  .|..||+|....++..+..|.+ .-..|  ...|++++|++|+.||.|++
T Consensus       250 ~gGvThL~~~edG------n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~v  323 (406)
T KOG2919|consen  250 GGGVTHLQWCEDG------NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRV  323 (406)
T ss_pred             CCCeeeEEeccCc------CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEE
Confidence            9999999999999      788888763  3999999988888888888766 33344  44689999999999999999


Q ss_pred             EEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCC
Q 008363          304 VSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD  356 (568)
Q Consensus       304 wd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D  356 (568)
                      ||+...       |..        +..+..|...|+.++++|--.++++++..
T Consensus       324 wdlk~~-------gn~--------~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  324 WDLKDL-------GNE--------VSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             EecCCC-------CCc--------ccccccccccccceecCcccceeeeccCc
Confidence            999653       332        35777889999999999998888888754

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.70  E-value=3.9e-16  Score=157.38  Aligned_cols=235  Identities=17%  Similarity=0.261  Sum_probs=180.2

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      +|++++|-|+|          ..|+.+.+ ..+.|||...|..++++                          .+|...|
T Consensus        14 ci~d~afkPDG----------sqL~lAAg-~rlliyD~ndG~llqtL--------------------------KgHKDtV   56 (1081)
T KOG1538|consen   14 CINDIAFKPDG----------TQLILAAG-SRLLVYDTSDGTLLQPL--------------------------KGHKDTV   56 (1081)
T ss_pred             chheeEECCCC----------ceEEEecC-CEEEEEeCCCccccccc--------------------------ccccceE
Confidence            77899999999          55655544 57999999999988887                          8999999


Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEE
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFW  261 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lw  261 (568)
                       +||+|+  .+|..+|+|+.|..|.+|+-.-.       -+..+ .|...|.|+.|+|-.      +.|+|++-.-.-+|
T Consensus        57 -ycVAys--~dGkrFASG~aDK~VI~W~~klE-------G~LkY-SH~D~IQCMsFNP~~------h~LasCsLsdFglW  119 (1081)
T KOG1538|consen   57 -YCVAYA--KDGKRFASGSADKSVIIWTSKLE-------GILKY-SHNDAIQCMSFNPIT------HQLASCSLSDFGLW  119 (1081)
T ss_pred             -EEEEEc--cCCceeccCCCceeEEEeccccc-------ceeee-ccCCeeeEeecCchH------HHhhhcchhhcccc
Confidence             999999  99999999999999999986532       22223 699999999999998      89999999888899


Q ss_pred             ECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEE
Q 008363          262 DIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSV  341 (568)
Q Consensus       262 D~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l  341 (568)
                      .....  .+... .....|.+++|..||++++.|-.+|+|.+=+-         +|++-     ..+..-.|.+.+|+++
T Consensus       120 S~~qK--~V~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk---------~gEek-----~~I~Rpgg~Nspiwsi  182 (1081)
T KOG1538|consen  120 SPEQK--SVSKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNK---------NGEEK-----VKIERPGGSNSPIWSI  182 (1081)
T ss_pred             Chhhh--hHHhh-hhheeEEEeeecCCCcEEEEeccCceEEeecC---------CCCcc-----eEEeCCCCCCCCceEE
Confidence            87653  22111 12456889999999999999999999987643         45442     2222334577899999


Q ss_pred             EEecCC-----CEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccCCCCCcccccc
Q 008363          342 QVSRLT-----GMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKT  409 (568)
Q Consensus       342 ~~sp~~-----~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~k~~  409 (568)
                      +|+|..     ..+++..+..++.++.+......++..-.-.  -.|.++-+.|+.+.+|.......+..++.
T Consensus       183 ~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~Fd--P~CisYf~NGEy~LiGGsdk~L~~fTR~G  253 (1081)
T KOG1538|consen  183 CWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFD--PCCISYFTNGEYILLGGSDKQLSLFTRDG  253 (1081)
T ss_pred             EecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCC--chhheeccCCcEEEEccCCCceEEEeecC
Confidence            999973     5899999999999999987665554222222  34668888888888876666555554444

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=3e-15  Score=151.97  Aligned_cols=206  Identities=16%  Similarity=0.297  Sum_probs=166.1

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      ..++..+.+-+++|++.+           .|.+.+.+|+|.-||+.+++....+                          
T Consensus        64 i~g~~drsIE~L~W~e~~-----------RLFS~g~sg~i~EwDl~~lk~~~~~--------------------------  106 (691)
T KOG2048|consen   64 IHGPEDRSIESLAWAEGG-----------RLFSSGLSGSITEWDLHTLKQKYNI--------------------------  106 (691)
T ss_pred             EecCCCCceeeEEEccCC-----------eEEeecCCceEEEEecccCceeEEe--------------------------
Confidence            456777788899999665           7889999999999999998877665                          


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG  254 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s  254 (568)
                      ....+.| ++++-+  |.+..++.||.||.+..++...+.    ....+.+...++.|.+++|+|++      ..|++|+
T Consensus       107 d~~gg~I-Wsiai~--p~~~~l~IgcddGvl~~~s~~p~~----I~~~r~l~rq~sRvLslsw~~~~------~~i~~Gs  173 (691)
T KOG2048|consen  107 DSNGGAI-WSIAIN--PENTILAIGCDDGVLYDFSIGPDK----ITYKRSLMRQKSRVLSLSWNPTG------TKIAGGS  173 (691)
T ss_pred             cCCCcce-eEEEeC--CccceEEeecCCceEEEEecCCce----EEEEeecccccceEEEEEecCCc------cEEEecc
Confidence            4455677 999987  778899999999977777776552    24445666667999999999999      7899999


Q ss_pred             CCC-EEEEECCCCCcceee-------eCC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccc
Q 008363          255 HGG-LKFWDIRDPFRPLWD-------IHP-APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQ  325 (568)
Q Consensus       255 ~d~-v~lwD~~~~~~~~~~-------~~~-h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~  325 (568)
                      .|+ |++||+..+. .+..       +.. ...-|+++.|..++ .|++|..-|+|.+||..        .|.++     
T Consensus       174 ~Dg~Iriwd~~~~~-t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~--------~gTLi-----  238 (691)
T KOG2048|consen  174 IDGVIRIWDVKSGQ-TLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSI--------FGTLI-----  238 (691)
T ss_pred             cCceEEEEEcCCCc-eEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEccc--------Ccchh-----
Confidence            999 9999999873 3331       111 23346888888665 58999999999999984        46554     


Q ss_pred             cceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363          326 QGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       326 ~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~  368 (568)
                         ..+..|.+.|.+++..+++.++++++.|+.|..|...+..
T Consensus       239 ---qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~  278 (691)
T KOG2048|consen  239 ---QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNK  278 (691)
T ss_pred             ---hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCc
Confidence               4778899999999999999999999999999999887663

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=3.2e-15  Score=156.55  Aligned_cols=210  Identities=14%  Similarity=0.161  Sum_probs=152.6

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEE---ecc--------C---CccCCCCceEEEeecce--ecccccCCcCccceEEE
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAI---YLS--------S---MKEGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTME  186 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l---~~~--------~---~~~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~  186 (568)
                      +.|++|+.+++|.+|.++.++.-..|   ..+        .   -+.|++|..|++-....  -...+.+|.++| ++|.
T Consensus        67 ~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apV-l~l~  145 (933)
T KOG1274|consen   67 NHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPV-LQLS  145 (933)
T ss_pred             cceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCce-eeee
Confidence            68999999999999999986543222   111        1   16788899999888776  345678999999 9999


Q ss_pred             EccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeE-EeeCC-CCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEEC
Q 008363          187 WSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLL-CFSAD-TLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDI  263 (568)
Q Consensus       187 ~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h-~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~  263 (568)
                      |+  |++.+||+.+.||+|++||+..+........+. .+..- ...+..++|+|++      ..|+..+.|+ |++|+.
T Consensus       146 ~~--p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~------g~la~~~~d~~Vkvy~r  217 (933)
T KOG1274|consen  146 YD--PKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG------GTLAVPPVDNTVKVYSR  217 (933)
T ss_pred             Ec--CCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC------CeEEeeccCCeEEEEcc
Confidence            99  889999999999999999999774321111111 11111 4557889999997      4555555555 999999


Q ss_pred             CCCCcceeeeC--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEE
Q 008363          264 RDPFRPLWDIH--PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSV  341 (568)
Q Consensus       264 ~~~~~~~~~~~--~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l  341 (568)
                      .++ .....+.  .+...+..+.|+|.|.||++++.||.|.|||..+..                   . ..-...|+++
T Consensus       218 ~~w-e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~-------------------~-~~~~~~Vc~~  276 (933)
T KOG1274|consen  218 KGW-ELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE-------------------R-HEFKRAVCCE  276 (933)
T ss_pred             CCc-eeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch-------------------h-ccccceeEEE
Confidence            987 5554444  334448999999999999999999999999995411                   1 2234689999


Q ss_pred             EEecCCCEEEEEeCCCeEEEE
Q 008363          342 QVSRLTGMVAYCSADGTVHRF  362 (568)
Q Consensus       342 ~~sp~~~~l~s~s~Dg~v~iw  362 (568)
                      +|.|+...|-.-..-|...+|
T Consensus       277 aw~p~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  277 AWKPNANAITLITALGTLGVS  297 (933)
T ss_pred             ecCCCCCeeEEEeeccccccC
Confidence            999998766555555554444

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.69  E-value=1.8e-15  Score=157.94  Aligned_cols=249  Identities=15%  Similarity=0.145  Sum_probs=175.8

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCce--eeEEeccCCccCCCCceEEEeecceecccccCCcC
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRT--MKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ  179 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~--~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~  179 (568)
                      .|.+++|+|..+         .+||.|+.+|.|.+||+..+..  ...+                      ......|..
T Consensus       244 ~v~~~~f~p~~p---------~ll~gG~y~GqV~lWD~~~~~~~~~s~l----------------------s~~~~sh~~  292 (555)
T KOG1587|consen  244 EVTCLKFCPFDP---------NLLAGGCYNGQVVLWDLRKGSDTPPSGL----------------------SALEVSHSE  292 (555)
T ss_pred             ceeEEEeccCCc---------ceEEeeccCceEEEEEccCCCCCCCccc----------------------ccccccCCc
Confidence            445999999987         8999999999999999998554  2221                      112267888


Q ss_pred             ccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee------CCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363          180 SIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS------ADTLPIRAVSWAPAESDSDSANVILTA  253 (568)
Q Consensus       180 ~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~------~h~~~V~~v~~~p~~~~~~~~~~las~  253 (568)
                      .+ +.+.|...+.+.-|++++.||.|..|+++.-.......+.....      .-...+++++|.+..     ++.|+.|
T Consensus       293 ~v-~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~-----p~~FiVG  366 (555)
T KOG1587|consen  293 PV-TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD-----PNHFIVG  366 (555)
T ss_pred             Ce-EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC-----CceEEEE
Confidence            98 99999866555679999999999999887443322222222221      223468999999986     6889999


Q ss_pred             cCCC-EEE---EECCCCC----cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccc
Q 008363          254 GHGG-LKF---WDIRDPF----RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQ  325 (568)
Q Consensus       254 s~d~-v~l---wD~~~~~----~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~  325 (568)
                      ++.| |.-   ++.+...    ..+..+..|.++|+++.++|-+..++.++.|.+|+||......               
T Consensus       367 Te~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~---------------  431 (555)
T KOG1587|consen  367 TEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA---------------  431 (555)
T ss_pred             cCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC---------------
Confidence            9998 655   3333322    2234556789999999999998888877779999999984211               


Q ss_pred             cceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCCCeeeccCCC-CCcceeeeecccCCCCceEEcccCCCC
Q 008363          326 QGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTAKAVEKDHSR-NRPMHFLCGSVTEDESAITVNTPLDNT  402 (568)
Q Consensus       326 ~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~i~~~~~~~~~  402 (568)
                      .++..+..+...|++++|||.. ..++++..||.|.|||+.....+-.... ...+...+..+++.+..+++|...+.+
T Consensus       432 ~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~  510 (555)
T KOG1587|consen  432 SPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTT  510 (555)
T ss_pred             CcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcE
Confidence            3445777788889999999985 7888888999999999964332211000 012334444566667777777666655

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=5.8e-16  Score=153.24  Aligned_cols=231  Identities=17%  Similarity=0.212  Sum_probs=167.7

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      +.||+| ||.++.|+.+|          .+|++|++|-.+.|||.-..+.+..+                         .
T Consensus        46 L~GH~G-CVN~LeWn~dG----------~lL~SGSDD~r~ivWd~~~~KllhsI-------------------------~   89 (758)
T KOG1310|consen   46 LTGHTG-CVNCLEWNADG----------ELLASGSDDTRLIVWDPFEYKLLHSI-------------------------S   89 (758)
T ss_pred             hccccc-eecceeecCCC----------CEEeecCCcceEEeecchhcceeeee-------------------------e
Confidence            469999 88899999999          79999999999999999876666554                         1


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCC----CCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSS----IDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI  250 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~----~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l  250 (568)
                      .||+..| +++.|-|..+.+++++|..|..|+++|+...+..    ....+...+..|...|..|+-.|.+     |+.|
T Consensus        90 TgHtaNI-FsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-----Phtf  163 (758)
T KOG1310|consen   90 TGHTANI-FSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-----PHTF  163 (758)
T ss_pred             cccccce-eEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCC-----CceE
Confidence            7999999 9999999888889999999999999999853221    1224566778899999999999997     7999


Q ss_pred             EEEcCCC-EEEEECCCCCcceee---------eCCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEccccccCCCCCCCC
Q 008363          251 LTAGHGG-LKFWDIRDPFRPLWD---------IHPAPKFIYGLDWLPD-PGCVILSFDDGAMRIVSLLKAAYDVPATGKP  319 (568)
Q Consensus       251 as~s~d~-v~lwD~~~~~~~~~~---------~~~h~~~i~~l~~sp~-~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~  319 (568)
                      -++++|| |+-+|+|.+..+-..         +...--...++..+|. ..+|++|+.|-..+|||.|......+..|..
T Consensus       164 wsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~  243 (758)
T KOG1310|consen  164 WSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTM  243 (758)
T ss_pred             EEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccc
Confidence            9999999 999999975432211         1122234578999995 4677888999999999966543322222321


Q ss_pred             ccCcc--ccceEEEe-cCC-----------CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363          320 FAGTK--QQGLHLVN-CSS-----------FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       320 ~~~~~--~~~l~~~~-~h~-----------~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~  367 (568)
                      ..-..  -.|+.-|. +|-           ..++-+.|+|+|.-|+..-..-.|++||+..+
T Consensus       244 ~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~  305 (758)
T KOG1310|consen  244 NTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED  305 (758)
T ss_pred             cCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence            11000  01222221 121           12567899999855555444558999999754

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.69  E-value=1.4e-15  Score=147.86  Aligned_cols=224  Identities=13%  Similarity=0.163  Sum_probs=167.7

Q ss_pred             CCCcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEe
Q 008363           86 DIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLE  165 (568)
Q Consensus        86 ~~~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~  165 (568)
                      +...+.+.++..|.+ .|.++.|+|...         ..+++.+.||+|++-|+.....-..+..               
T Consensus       221 ~~d~d~v~~f~~hs~-~Vs~l~F~P~n~---------s~i~ssSyDGtiR~~D~~~~i~e~v~s~---------------  275 (498)
T KOG4328|consen  221 EKDKDGVYLFTPHSG-PVSGLKFSPANT---------SQIYSSSYDGTIRLQDFEGNISEEVLSL---------------  275 (498)
T ss_pred             CCccCceEEeccCCc-cccceEecCCCh---------hheeeeccCceeeeeeecchhhHHHhhc---------------
Confidence            446678888999999 455999999887         7899999999999999988432211100               


Q ss_pred             ecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCC
Q 008363          166 PVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSD  245 (568)
Q Consensus       166 ~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~  245 (568)
                               ......+ ..++|+  .+...++.|..=|...+||+++..     .....+.-|...|.+|+++|-.    
T Consensus       276 ---------~~d~~~f-s~~d~~--~e~~~vl~~~~~G~f~~iD~R~~~-----s~~~~~~lh~kKI~sv~~NP~~----  334 (498)
T KOG4328|consen  276 ---------DTDNIWF-SSLDFS--AESRSVLFGDNVGNFNVIDLRTDG-----SEYENLRLHKKKITSVALNPVC----  334 (498)
T ss_pred             ---------Cccceee-eecccc--CCCccEEEeecccceEEEEeecCC-----ccchhhhhhhcccceeecCCCC----
Confidence                     1112223 567776  666778888888899999999773     2344455688899999999996    


Q ss_pred             CCcEEEEEcCCC-EEEEECCCCC--c-ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCcc
Q 008363          246 SANVILTAGHGG-LKFWDIRDPF--R-PLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFA  321 (568)
Q Consensus       246 ~~~~las~s~d~-v~lwD~~~~~--~-~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~  321 (568)
                       |.+|||+|.|. ++|||+|.-.  . |+.....|...|.+..|||++-.|++.+.|..|+|||..-+....        
T Consensus       335 -p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~--------  405 (498)
T KOG4328|consen  335 -PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKD--------  405 (498)
T ss_pred             -chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccC--------
Confidence             69999999998 9999999653  2 344455899999999999999889999999999999984222111        


Q ss_pred             CccccceEEEecCCC------CEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363          322 GTKQQGLHLVNCSSF------AIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV  369 (568)
Q Consensus       322 ~~~~~~l~~~~~h~~------~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~  369 (568)
                          .++.++. |..      ......|.|+..+|++|-.-..|-|+|-+.++.
T Consensus       406 ----~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~  454 (498)
T KOG4328|consen  406 ----EPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQM  454 (498)
T ss_pred             ----Cccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEE
Confidence                1222222 221      234568999999999999999999999988773

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=4.7e-15  Score=137.69  Aligned_cols=221  Identities=14%  Similarity=0.101  Sum_probs=157.8

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccC
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEG  156 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~  156 (568)
                      .+...+.|...+. +++|.++.           .+++|+.||.|+++|+.++...... .|..              ++|
T Consensus        46 ~l~~~~~~~~plL-~c~F~d~~-----------~~~~G~~dg~vr~~Dln~~~~~~ig-th~~~i~ci~~~~~~~~vIsg  112 (323)
T KOG1036|consen   46 SLKLKFKHGAPLL-DCAFADES-----------TIVTGGLDGQVRRYDLNTGNEDQIG-THDEGIRCIEYSYEVGCVISG  112 (323)
T ss_pred             hhhhheecCCcee-eeeccCCc-----------eEEEeccCceEEEEEecCCcceeec-cCCCceEEEEeeccCCeEEEc
Confidence            3445567888444 99999865           7999999999999999986543322 2221              789


Q ss_pred             CCCceEEEeecce-ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEE
Q 008363          157 TDPRFVKLEPVFR-CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAV  235 (568)
Q Consensus       157 ~~~~~v~~~~~~~-~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v  235 (568)
                      +-|+.|++|+... +..........| +|++-.    |+.|++|+.|..|.+||++....    .....-..-.-.++||
T Consensus       113 sWD~~ik~wD~R~~~~~~~~d~~kkV-y~~~v~----g~~LvVg~~~r~v~iyDLRn~~~----~~q~reS~lkyqtR~v  183 (323)
T KOG1036|consen  113 SWDKTIKFWDPRNKVVVGTFDQGKKV-YCMDVS----GNRLVVGTSDRKVLIYDLRNLDE----PFQRRESSLKYQTRCV  183 (323)
T ss_pred             ccCccEEEEeccccccccccccCceE-EEEecc----CCEEEEeecCceEEEEEcccccc----hhhhccccceeEEEEE
Confidence            9999999999984 222223344578 888854    78999999999999999986632    1111122335568999


Q ss_pred             EEccCCCCCCCCcEEEEEcCCC-EEEEECCCCC---cceeeeCCCC---------CCeEEEEEcCCCCEEEEEeCCCcEE
Q 008363          236 SWAPAESDSDSANVILTAGHGG-LKFWDIRDPF---RPLWDIHPAP---------KFIYGLDWLPDPGCVILSFDDGAMR  302 (568)
Q Consensus       236 ~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~---~~~~~~~~h~---------~~i~~l~~sp~~~~l~s~~~dg~I~  302 (568)
                      ++-|++      .=++.++-+| |.+=.+....   ..-..|..|.         -+|++|+|+|-..+|++|+.||.|.
T Consensus       184 ~~~pn~------eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~  257 (323)
T KOG1036|consen  184 ALVPNG------EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVN  257 (323)
T ss_pred             EEecCC------CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEE
Confidence            999976      5566667666 5554333321   1223444443         2689999999999999999999999


Q ss_pred             EEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeC
Q 008363          303 IVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSA  355 (568)
Q Consensus       303 lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~  355 (568)
                      +||+.+        .        +.+..+..-...|.+++|+.+|..||+++.
T Consensus       258 ~Wd~~~--------r--------Krl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  258 IWDLFN--------R--------KRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EccCcc--------h--------hhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            999943        2        223466666678999999999999999973

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.66  E-value=4.4e-15  Score=136.56  Aligned_cols=199  Identities=15%  Similarity=0.253  Sum_probs=152.5

Q ss_pred             ceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCce--eeEEeccCCccCCCCceEEEeecceecccccCCc
Q 008363          101 KVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRT--MKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGT  178 (568)
Q Consensus       101 ~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~--~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~  178 (568)
                      ..+.+..|+.-.+         ++|.+++-|-+..|||++++..  +++                         .+..|.
T Consensus       151 aPlTSFDWne~dp---------~~igtSSiDTTCTiWdie~~~~~~vkT-------------------------QLIAHD  196 (364)
T KOG0290|consen  151 APLTSFDWNEVDP---------NLIGTSSIDTTCTIWDIETGVSGTVKT-------------------------QLIAHD  196 (364)
T ss_pred             CcccccccccCCc---------ceeEeecccCeEEEEEEeeccccceee-------------------------EEEecC
Confidence            4566889988776         8999999999999999998632  111                         116899


Q ss_pred             CccceEEEEccCCC-CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC
Q 008363          179 QSIPLTMEWSTSPP-HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG  257 (568)
Q Consensus       179 ~~V~~~v~~s~~~~-g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~  257 (568)
                      ..| +.++|.  .. -+.||+.+.||.||+||++....   ...+..-..-..+...++|++..     ++++|+-..|.
T Consensus       197 KEV-~DIaf~--~~s~~~FASvgaDGSvRmFDLR~leH---STIIYE~p~~~~pLlRLswnkqD-----pnymATf~~dS  265 (364)
T KOG0290|consen  197 KEV-YDIAFL--KGSRDVFASVGADGSVRMFDLRSLEH---STIIYEDPSPSTPLLRLSWNKQD-----PNYMATFAMDS  265 (364)
T ss_pred             cce-eEEEec--cCccceEEEecCCCcEEEEEeccccc---ceEEecCCCCCCcceeeccCcCC-----chHHhhhhcCC
Confidence            999 999998  33 35899999999999999996522   11221111225678889999987     69999998885


Q ss_pred             --EEEEECCCCCcceeeeCCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363          258 --LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPD-PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS  334 (568)
Q Consensus       258 --v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~-~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h  334 (568)
                        |.+.|+|.+..++..+++|.+.|+.++|.|. ...|+++|+|..+-+||+..+..+      .    ...++..+. -
T Consensus       266 ~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~------~----~~dPilay~-a  334 (364)
T KOG0290|consen  266 NKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE------N----GEDPILAYT-A  334 (364)
T ss_pred             ceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccccc------C----CCCchhhhh-c
Confidence              9999999999999999999999999999996 467888899999999999764421      1    113334444 5


Q ss_pred             CCCEEEEEEecC-CCEEEEEeC
Q 008363          335 SFAIWSVQVSRL-TGMVAYCSA  355 (568)
Q Consensus       335 ~~~V~~l~~sp~-~~~l~s~s~  355 (568)
                      .+.|+.++|++. +.+|+.+..
T Consensus       335 ~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  335 GGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             cceeeeeeecccCCCEEEEEec
Confidence            678999999976 567777653

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.66  E-value=9.2e-15  Score=136.32  Aligned_cols=216  Identities=17%  Similarity=0.229  Sum_probs=166.0

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      .|++.+|+++.          ..+|++.....|.||.....+.-..                       ..++..|...|
T Consensus        12 pitchAwn~dr----------t~iAv~~~~~evhiy~~~~~~~w~~-----------------------~htls~Hd~~v   58 (361)
T KOG1523|consen   12 PITCHAWNSDR----------TQIAVSPNNHEVHIYSMLGADLWEP-----------------------AHTLSEHDKIV   58 (361)
T ss_pred             ceeeeeecCCC----------ceEEeccCCceEEEEEecCCCCcee-----------------------ceehhhhCcce
Confidence            67799999999          7999999999999999877442211                       11227889999


Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEc-cCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EE
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKF-VASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LK  259 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~-~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~  259 (568)
                       ++|+|+  |..+.|++++.|..-++|.. ..+.+    ++...+..|+..+++|.|+|.+      +.||+|+... |.
T Consensus        59 -tgvdWa--p~snrIvtcs~drnayVw~~~~~~~W----kptlvLlRiNrAAt~V~WsP~e------nkFAVgSgar~is  125 (361)
T KOG1523|consen   59 -TGVDWA--PKSNRIVTCSHDRNAYVWTQPSGGTW----KPTLVLLRINRAATCVKWSPKE------NKFAVGSGARLIS  125 (361)
T ss_pred             -eEEeec--CCCCceeEccCCCCccccccCCCCee----ccceeEEEeccceeeEeecCcC------ceEEeccCccEEE
Confidence             999999  77889999999999999998 55533    7777778889999999999998      9999999988 88


Q ss_pred             EEECCCCCc---ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc--cccC-C-CCCCC--CccCccccceEE
Q 008363          260 FWDIRDPFR---PLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK--AAYD-V-PATGK--PFAGTKQQGLHL  330 (568)
Q Consensus       260 lwD~~~~~~---~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~--~~~~-~-~~~g~--~~~~~~~~~l~~  330 (568)
                      ||-+.....   ....-..+...|++++|+|++-+|++|+.|+..|+|..--  .+.. . +.-|.  ++.    +.+..
T Consensus       126 Vcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG----~lm~E  201 (361)
T KOG1523|consen  126 VCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFG----QLMSE  201 (361)
T ss_pred             EEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHH----HHHHh
Confidence            887775431   1123346678899999999999999999999999997411  1100 0 00111  111    12234


Q ss_pred             EecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363          331 VNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       331 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~  367 (568)
                      +....+.|..+.|+|.|..|+-.+.|+++.+=|....
T Consensus       202 ~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  202 ASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             hccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence            4456678999999999999999999999999988654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.66  E-value=2.6e-15  Score=152.61  Aligned_cols=225  Identities=18%  Similarity=0.263  Sum_probs=167.4

Q ss_pred             cceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCC-----cEEEEECCCCceeeEEeccCCccCCCCceEE
Q 008363           89 LPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNG-----SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVK  163 (568)
Q Consensus        89 ~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg-----~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~  163 (568)
                      .|.+..++||-. -|++++.+|++          ++||+++...     .|+||+..+-...+.|               
T Consensus       515 wPEv~KLYGHGy-Ev~~l~~s~~g----------nliASaCKS~~~ehAvI~lw~t~~W~~~~~L---------------  568 (764)
T KOG1063|consen  515 WPEVHKLYGHGY-EVYALAISPTG----------NLIASACKSSLKEHAVIRLWNTANWLQVQEL---------------  568 (764)
T ss_pred             chhhHHhccCce-eEEEEEecCCC----------CEEeehhhhCCccceEEEEEeccchhhhhee---------------
Confidence            366677889999 55599999999          8999998643     5899999885555454               


Q ss_pred             EeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCC
Q 008363          164 LEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESD  243 (568)
Q Consensus       164 ~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~  243 (568)
                                 .+|.-.| +.++|+  |||++|++.|.|.++.+|.......  ........+.|+.-|.+..|+|++  
T Consensus       569 -----------~~HsLTV-T~l~FS--pdg~~LLsvsRDRt~sl~~~~~~~~--~e~~fa~~k~HtRIIWdcsW~pde--  630 (764)
T KOG1063|consen  569 -----------EGHSLTV-TRLAFS--PDGRYLLSVSRDRTVSLYEVQEDIK--DEFRFACLKAHTRIIWDCSWSPDE--  630 (764)
T ss_pred             -----------cccceEE-EEEEEC--CCCcEEEEeecCceEEeeeeecccc--hhhhhccccccceEEEEcccCccc--
Confidence                       8899999 999999  9999999999999999999854321  111233477899999999999998  


Q ss_pred             CCCCcEEEEEcCCC-EEEEECCCCC-cce--eeeCCCCCCeEEEEEcCC-----CCEEEEEeCCCcEEEEEccccccCCC
Q 008363          244 SDSANVILTAGHGG-LKFWDIRDPF-RPL--WDIHPAPKFIYGLDWLPD-----PGCVILSFDDGAMRIVSLLKAAYDVP  314 (568)
Q Consensus       244 ~~~~~~las~s~d~-v~lwD~~~~~-~~~--~~~~~h~~~i~~l~~sp~-----~~~l~s~~~dg~I~lwd~~~~~~~~~  314 (568)
                          .+|||+|.|+ |++|...... ..+  .....+...|+.++|.|-     +..++.|-..|.|.||...... ..+
T Consensus       631 ----~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~-~~~  705 (764)
T KOG1063|consen  631 ----KYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREH-RQV  705 (764)
T ss_pred             ----ceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEeccccc-ccc
Confidence                8899999999 9999887652 111  133467889999999872     2356777889999999965322 100


Q ss_pred             CCCCCccCccccceEEEecCCCCEEEEEEecCC----------CEEEEEeCCCeEEEEEcC
Q 008363          315 ATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT----------GMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       315 ~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~----------~~l~s~s~Dg~v~iwd~~  365 (568)
                      ..+...   ....+....+|...|+.+.|.|..          ..|++|+.|..++++++.
T Consensus       706 ~~~~~~---~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  706 TVGTFN---LDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             cceeee---eccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence            111110   011122345677899999999761          357999999999999874

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=2.6e-15  Score=145.11  Aligned_cols=196  Identities=18%  Similarity=0.178  Sum_probs=148.8

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT  184 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~  184 (568)
                      .++|++++          ..|++|+.||.+|||+++....+...                          ..|...| -+
T Consensus       149 ~vaf~~~g----------s~latgg~dg~lRv~~~Ps~~t~l~e--------------------------~~~~~eV-~D  191 (398)
T KOG0771|consen  149 VVAFNGDG----------SKLATGGTDGTLRVWEWPSMLTILEE--------------------------IAHHAEV-KD  191 (398)
T ss_pred             EEEEcCCC----------CEeeeccccceEEEEecCcchhhhhh--------------------------HhhcCcc-cc
Confidence            69999999          79999999999999999886555443                          6788899 99


Q ss_pred             EEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee--CCCCCeeEEEEccCCCCCCCCcE-EEEE-cCCC-EE
Q 008363          185 MEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS--ADTLPIRAVSWAPAESDSDSANV-ILTA-GHGG-LK  259 (568)
Q Consensus       185 v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~--~h~~~V~~v~~~p~~~~~~~~~~-las~-s~d~-v~  259 (568)
                      ++|+  |||.+|++-+.| ..+||+++++      .++....  .-......+.|+.++.  + +.+ +++. ...+ |+
T Consensus       192 L~FS--~dgk~lasig~d-~~~VW~~~~g------~~~a~~t~~~k~~~~~~cRF~~d~~--~-~~l~laa~~~~~~~v~  259 (398)
T KOG0771|consen  192 LDFS--PDGKFLASIGAD-SARVWSVNTG------AALARKTPFSKDEMFSSCRFSVDNA--Q-ETLRLAASQFPGGGVR  259 (398)
T ss_pred             ceeC--CCCcEEEEecCC-ceEEEEeccC------chhhhcCCcccchhhhhceecccCC--C-ceEEEEEecCCCCcee
Confidence            9999  999999999999 9999999977      3443332  2233466677777651  1 233 3333 3334 88


Q ss_pred             EEECCCCCc----ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceE-EEecC
Q 008363          260 FWDIRDPFR----PLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH-LVNCS  334 (568)
Q Consensus       260 lwD~~~~~~----~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~-~~~~h  334 (568)
                      .||+.....    .......-...|++++.+++|++++.|+.||.|-|++..++.                +++ .-+.|
T Consensus       260 ~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq----------------~~~~vk~aH  323 (398)
T KOG0771|consen  260 LCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQ----------------RLQYVKEAH  323 (398)
T ss_pred             EEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceee----------------eeEeehhhh
Confidence            888765533    222222223468999999999999999999999999995422                222 34579


Q ss_pred             CCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          335 SFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       335 ~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      ...|+.+.|+|+.+++++.+.|....+..+.
T Consensus       324 ~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  324 LGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             eeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            9999999999999999999999999998874

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.65  E-value=1.7e-15  Score=151.99  Aligned_cols=165  Identities=15%  Similarity=0.287  Sum_probs=131.5

Q ss_pred             CccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCC-CCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC
Q 008363          179 QSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSS-IDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG  257 (568)
Q Consensus       179 ~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~-~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~  257 (568)
                      ..| +.+.|.|. |...||+++.||.|+||.+..+... ....+...+.+|...|+++.|+|-..     ++|+++++|.
T Consensus       628 t~v-tDl~WdPF-D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAa-----dvLa~asyd~  700 (1012)
T KOG1445|consen  628 TLV-TDLHWDPF-DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAA-----DVLAVASYDS  700 (1012)
T ss_pred             cee-eecccCCC-ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhh-----hHhhhhhccc
Confidence            456 89999988 4479999999999999999866543 34567788999999999999999873     8999999998


Q ss_pred             -EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCC-
Q 008363          258 -LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS-  335 (568)
Q Consensus       258 -v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~-  335 (568)
                       |++||+++. .....+.+|++.|..++|||||+.+++.+.||+|++|..++...               ++..-.+.. 
T Consensus       701 Ti~lWDl~~~-~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~---------------pv~Eg~gpvg  764 (1012)
T KOG1445|consen  701 TIELWDLANA-KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ---------------PVYEGKGPVG  764 (1012)
T ss_pred             eeeeeehhhh-hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC---------------ccccCCCCcc
Confidence             999999987 66677889999999999999999999999999999999976431               122211111 


Q ss_pred             CCEEEEEEecCCCEEEEEeCC----CeEEEEEcCC
Q 008363          336 FAIWSVQVSRLTGMVAYCSAD----GTVHRFQLTA  366 (568)
Q Consensus       336 ~~V~~l~~sp~~~~l~s~s~D----g~v~iwd~~~  366 (568)
                      ..-..+.|.-+|++|+..+.|    ..|.+||.++
T Consensus       765 tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~  799 (1012)
T KOG1445|consen  765 TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT  799 (1012)
T ss_pred             CcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence            122346788899999888876    4577777643

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.65  E-value=6.1e-14  Score=139.67  Aligned_cols=186  Identities=11%  Similarity=0.074  Sum_probs=134.9

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEE-EEEeC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYL-LAGCH  201 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l-~sgs~  201 (568)
                      .++++++.|+.|++||+.+++.+..+                          .++.. + .+++|+  +++..+ ++++.
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~--------------------------~~~~~-~-~~l~~~--~dg~~l~~~~~~   51 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTF--------------------------PVGQR-P-RGITLS--KDGKLLYVCASD   51 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEE--------------------------ECCCC-C-CceEEC--CCCCEEEEEECC
Confidence            57899999999999999988777665                          32322 3 678998  788766 66778


Q ss_pred             CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE-EEEcCCC-EEEEECCCCCcceeeeCCCCCC
Q 008363          202 DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI-LTAGHGG-LKFWDIRDPFRPLWDIHPAPKF  279 (568)
Q Consensus       202 Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l-as~s~d~-v~lwD~~~~~~~~~~~~~h~~~  279 (568)
                      ++.|++||+.++      +.+..+..+.. +..++|+|++      +.+ ++++.++ |++||+++. ..+..+.. ...
T Consensus        52 ~~~v~~~d~~~~------~~~~~~~~~~~-~~~~~~~~~g------~~l~~~~~~~~~l~~~d~~~~-~~~~~~~~-~~~  116 (300)
T TIGR03866        52 SDTIQVIDLATG------EVIGTLPSGPD-PELFALHPNG------KILYIANEDDNLVTVIDIETR-KVLAEIPV-GVE  116 (300)
T ss_pred             CCeEEEEECCCC------cEEEeccCCCC-ccEEEECCCC------CEEEEEcCCCCeEEEEECCCC-eEEeEeeC-CCC
Confidence            999999999866      55555554443 5678999998      555 4555677 999999876 55555532 334


Q ss_pred             eEEEEEcCCCCEEEEEeCCC-cEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEE-eCCC
Q 008363          280 IYGLDWLPDPGCVILSFDDG-AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYC-SADG  357 (568)
Q Consensus       280 i~~l~~sp~~~~l~s~~~dg-~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~-s~Dg  357 (568)
                      +.+++|+|++.++++++.++ .+.+||...        ++.+        ..+. ....+.+++|+|++.+|+++ ..++
T Consensus       117 ~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~--------~~~~--------~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~  179 (300)
T TIGR03866       117 PEGMAVSPDGKIVVNTSETTNMAHFIDTKT--------YEIV--------DNVL-VDQRPRFAEFTADGKELWVSSEIGG  179 (300)
T ss_pred             cceEEECCCCCEEEEEecCCCeEEEEeCCC--------CeEE--------EEEE-cCCCccEEEECCCCCEEEEEcCCCC
Confidence            68899999999999988765 567788843        3221        2222 22345779999999887544 5699


Q ss_pred             eEEEEEcCCCeee
Q 008363          358 TVHRFQLTAKAVE  370 (568)
Q Consensus       358 ~v~iwd~~~~~~~  370 (568)
                      .|++||+.+++..
T Consensus       180 ~v~i~d~~~~~~~  192 (300)
T TIGR03866       180 TVSVIDVATRKVI  192 (300)
T ss_pred             EEEEEEcCcceee
Confidence            9999999876543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=1.2e-14  Score=138.47  Aligned_cols=223  Identities=16%  Similarity=0.215  Sum_probs=154.5

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      ..+|.| ||.++.|+.++          .+||+|+.|..++||++...-..++           ++.|.+        .-
T Consensus        52 ~~~H~G-CiNAlqFS~N~----------~~L~SGGDD~~~~~W~~de~~~~k~-----------~KPI~~--------~~  101 (609)
T KOG4227|consen   52 VREHTG-CINALQFSHND----------RFLASGGDDMHGRVWNVDELMVRKT-----------PKPIGV--------ME  101 (609)
T ss_pred             hhhhcc-ccceeeeccCC----------eEEeecCCcceeeeechHHHHhhcC-----------CCCcee--------cc
Confidence            468999 88899999998          8999999999999999876211111           001111        01


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCC---CCeeEEEEccCCCCCCCCcEEE
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADT---LPIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~---~~V~~v~~~p~~~~~~~~~~la  251 (568)
                      ..|...| +|++|.  ....++.+|..+|+|.+.|+.+.      +.+..+ .|.   +.|+.+..+|..      +.|+
T Consensus       102 ~~H~SNI-F~L~F~--~~N~~~~SG~~~~~VI~HDiEt~------qsi~V~-~~~~~~~~VY~m~~~P~D------N~~~  165 (609)
T KOG4227|consen  102 HPHRSNI-FSLEFD--LENRFLYSGERWGTVIKHDIETK------QSIYVA-NENNNRGDVYHMDQHPTD------NTLI  165 (609)
T ss_pred             Cccccce-EEEEEc--cCCeeEecCCCcceeEeeecccc------eeeeee-cccCcccceeecccCCCC------ceEE
Confidence            4566889 999998  66789999999999999999977      555555 344   489999999998      8999


Q ss_pred             EEcCCC-EEEEECCCCCcceeee--CCCCC--------------------------------------------------
Q 008363          252 TAGHGG-LKFWDIRDPFRPLWDI--HPAPK--------------------------------------------------  278 (568)
Q Consensus       252 s~s~d~-v~lwD~~~~~~~~~~~--~~h~~--------------------------------------------------  278 (568)
                      +.+.++ |.+||.+....+...+  .....                                                  
T Consensus       166 ~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~  245 (609)
T KOG4227|consen  166 VVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENT  245 (609)
T ss_pred             EEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccch
Confidence            999999 9999998652111100  00000                                                  


Q ss_pred             -------------------------------------------------CeEEEEEcCCCCEEEEEeCCCcEEEEEcccc
Q 008363          279 -------------------------------------------------FIYGLDWLPDPGCVILSFDDGAMRIVSLLKA  309 (568)
Q Consensus       279 -------------------------------------------------~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~  309 (568)
                                                                       .+.+++|-.| ..+++|+.+-.|++|.+...
T Consensus       246 ~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~  324 (609)
T KOG4227|consen  246 EWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRA  324 (609)
T ss_pred             hhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCC
Confidence                                                             1122223222 44777888888899987432


Q ss_pred             ccC--CCCCCCC-----ccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          310 AYD--VPATGKP-----FAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       310 ~~~--~~~~g~~-----~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                      ...  ....|.-     ........+..+.||...+..|.|+|...+|++.+-...++||.-
T Consensus       325 ~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  325 NDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             ccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence            110  0011220     000011356789999999999999999999999999999999965

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.63  E-value=8.1e-15  Score=133.15  Aligned_cols=162  Identities=19%  Similarity=0.250  Sum_probs=120.0

Q ss_pred             CccceEEEEccCCCCC--EEEEEeCCCeEEEEEccCCCCC----CCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363          179 QSIPLTMEWSTSPPHD--YLLAGCHDGTVALWKFVASDSS----IDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILT  252 (568)
Q Consensus       179 ~~V~~~v~~s~~~~g~--~l~sgs~Dg~I~iwd~~~~~~~----~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las  252 (568)
                      +.+ +|..|... .+.  +|++|..+|.|.+||+.++...    ...+.......|..+|.++.|.+.-      ..=++
T Consensus       151 gsv-mc~~~~~~-c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~------~rGis  222 (323)
T KOG0322|consen  151 GSV-MCQDKDHA-CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC------DRGIS  222 (323)
T ss_pred             Cce-eeeecccc-ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh------cCCcC
Confidence            344 56665422 222  5778999999999999875211    1123334455799999999998765      44556


Q ss_pred             EcCCC-EEEEECCCCCc--ce-eeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363          253 AGHGG-LKFWDIRDPFR--PL-WDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       253 ~s~d~-v~lwD~~~~~~--~~-~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                      |+.+. +..|.+.....  ++ ..+.-..-.|..+..-||++.++++|.|+.||+|..++        +++        +
T Consensus       223 gga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt--------l~p--------L  286 (323)
T KOG0322|consen  223 GGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT--------LNP--------L  286 (323)
T ss_pred             CCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEecc--------CCc--------h
Confidence            66665 88998875421  22 11111234578899999999999999999999999964        444        4


Q ss_pred             EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                      ..+..|.+.|.+++|+|+..++|++|.|+.|-+|++
T Consensus       287 AVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  287 AVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            689999999999999999999999999999999987

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=5.6e-14  Score=130.39  Aligned_cols=195  Identities=15%  Similarity=0.234  Sum_probs=147.0

Q ss_pred             ccCCCCceEEEeecce------ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCC---CCceeEE
Q 008363          154 KEGTDPRFVKLEPVFR------CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSI---DSRPLLC  224 (568)
Q Consensus       154 ~~~~~~~~v~~~~~~~------~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~---~~~~~~~  224 (568)
                      +.++.+..+++|+...      |......|.+.| ..|.|.+..-|+.+|+++.|+++.||.-.......   ......+
T Consensus        29 AtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si-~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~tt  107 (361)
T KOG2445|consen   29 ATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSI-WRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTT  107 (361)
T ss_pred             eeccCCCcEEEEeccCCCCceEEeeeEEecCCcE-EEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEE
Confidence            4688999999999432      666778899999 99999866668999999999999999863222111   1234456


Q ss_pred             eeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCC-----cceeeeC-------CCCCCeEEEEEcCC---
Q 008363          225 FSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPF-----RPLWDIH-------PAPKFIYGLDWLPD---  288 (568)
Q Consensus       225 ~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~-----~~~~~~~-------~h~~~i~~l~~sp~---  288 (568)
                      +....+.|++|.|.|..    .+-.+|+++.|| ||||+.-...     .....+.       .+.....|+.|+|.   
T Consensus       108 l~DsrssV~DV~FaP~h----lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~  183 (361)
T KOG2445|consen  108 LVDSRSSVTDVKFAPKH----LGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMH  183 (361)
T ss_pred             eecCCcceeEEEecchh----cceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeecccccc
Confidence            66778889999999976    457899999999 9999887652     1111222       35566789999984   


Q ss_pred             CCEEEEEeCC-----CcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecC-C---CEEEEEeCCCeE
Q 008363          289 PGCVILSFDD-----GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL-T---GMVAYCSADGTV  359 (568)
Q Consensus       289 ~~~l~s~~~d-----g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~-~---~~l~s~s~Dg~v  359 (568)
                      ..+|+.|+.+     +.++||....       .++.     ...+..+.+|..+|+.++|.|+ |   .+||+++.|| |
T Consensus       184 ~p~iAvgs~e~a~~~~~~~Iye~~e-------~~rK-----w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v  250 (361)
T KOG2445|consen  184 EPLIAVGSDEDAPHLNKVKIYEYNE-------NGRK-----WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-V  250 (361)
T ss_pred             CceEEEEcccCCccccceEEEEecC-------Ccce-----eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-E
Confidence            4677777665     4788998743       2322     2456678899999999999998 3   6899999999 9


Q ss_pred             EEEEcCC
Q 008363          360 HRFQLTA  366 (568)
Q Consensus       360 ~iwd~~~  366 (568)
                      +||.+..
T Consensus       251 ~I~~v~~  257 (361)
T KOG2445|consen  251 RIFKVKV  257 (361)
T ss_pred             EEEEEee
Confidence            9999964

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.61  E-value=1.2e-15  Score=157.72  Aligned_cols=226  Identities=16%  Similarity=0.314  Sum_probs=164.6

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      +.+|.. .|+|+.|...|          .++++|+.|..|+||...+..|+..+                          
T Consensus       186 LlgH~n-aVyca~fDrtg----------~~Iitgsdd~lvKiwS~et~~~lAs~--------------------------  228 (1113)
T KOG0644|consen  186 LLGHRN-AVYCAIFDRTG----------RYIITGSDDRLVKIWSMETARCLASC--------------------------  228 (1113)
T ss_pred             HHhhhh-heeeeeecccc----------ceEeecCccceeeeeeccchhhhccC--------------------------
Confidence            468888 67799999999          89999999999999999998888665                          


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG  254 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s  254 (568)
                      .||.+.| +.++-+  .+..++++++.|..|++|.+..+      .++..+.+|++.|++|+|+|..          +.+
T Consensus       229 rGhs~di-tdlavs--~~n~~iaaaS~D~vIrvWrl~~~------~pvsvLrghtgavtaiafsP~~----------sss  289 (1113)
T KOG0644|consen  229 RGHSGDI-TDLAVS--SNNTMIAAASNDKVIRVWRLPDG------APVSVLRGHTGAVTAIAFSPRA----------SSS  289 (1113)
T ss_pred             CCCcccc-chhccc--hhhhhhhhcccCceEEEEecCCC------chHHHHhccccceeeeccCccc----------cCC
Confidence            8999999 999866  67779999999999999999977      8899999999999999999973          567


Q ss_pred             CCC-EEEEECC-CCC----cceeeeCCCCCCeEEEEEcCCCCEEEEEeC-------------------------------
Q 008363          255 HGG-LKFWDIR-DPF----RPLWDIHPAPKFIYGLDWLPDPGCVILSFD-------------------------------  297 (568)
Q Consensus       255 ~d~-v~lwD~~-~~~----~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-------------------------------  297 (568)
                      .|+ +++||.+ ...    ++.. + ....-+.++.|...+..+++++.                               
T Consensus       290 ~dgt~~~wd~r~~~~~y~prp~~-~-~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~  367 (1113)
T KOG0644|consen  290 DDGTCRIWDARLEPRIYVPRPLK-F-TEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSI  367 (1113)
T ss_pred             CCCceEeccccccccccCCCCCC-c-ccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEecccccccc
Confidence            777 9999998 110    1110 0 00112223333333322333332                               


Q ss_pred             ------CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCCCeee
Q 008363          298 ------DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTAKAVE  370 (568)
Q Consensus       298 ------dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~~~~~  370 (568)
                            +-.+.+|++        .+|.+        ++.+.+|...+..+.++|.. ....+++.||...|||+..+.-+
T Consensus       368 ~~~ar~~~~~~vwnl--------~~g~l--------~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi  431 (1113)
T KOG0644|consen  368 VVTARNDHRLCVWNL--------YTGQL--------LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI  431 (1113)
T ss_pred             ceeeeeeeEeeeeec--------ccchh--------hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcc
Confidence                  334555655        23433        36778899999999999986 56678999999999999877655


Q ss_pred             ccCCCCCcceeeeecccCCCCceEE
Q 008363          371 KDHSRNRPMHFLCGSVTEDESAITV  395 (568)
Q Consensus       371 ~~~~~~~~~~~~~~s~~~~~~~i~~  395 (568)
                      +.+... ......+.|+.+|..+++
T Consensus       432 k~y~~g-h~kl~d~kFSqdgts~~l  455 (1113)
T KOG0644|consen  432 KHYFIG-HGKLVDGKFSQDGTSIAL  455 (1113)
T ss_pred             eeeecc-cceeeccccCCCCceEec
Confidence            544322 223344577777776655

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.60  E-value=1.3e-12  Score=134.99  Aligned_cols=235  Identities=21%  Similarity=0.339  Sum_probs=181.9

Q ss_pred             EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc-eeeEEeccC----------C-------cc
Q 008363           94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR-TMKAIYLSS----------M-------KE  155 (568)
Q Consensus        94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~-~~~~l~~~~----------~-------~~  155 (568)
                      ....|.. .+..+.|.+.+          ..++.++.|+.+.+|+...+. ....+....          .       ..
T Consensus        60 ~~~~~~~-~i~~~~~~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (466)
T COG2319          60 LLRGHED-SITSIAFSPDG----------ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLA  128 (466)
T ss_pred             eeeeccc-eEEEEEECCCC----------cEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEec
Confidence            3456777 55599999999          688888899999999998865 444443311          0       11


Q ss_pred             -CCCCceEEEeecce---ecccccCCcCccceEEEEccCCCCCEEEEEeC-CCeEEEEEccCCCCCCCCceeEEeeCCCC
Q 008363          156 -GTDPRFVKLEPVFR---CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH-DGTVALWKFVASDSSIDSRPLLCFSADTL  230 (568)
Q Consensus       156 -~~~~~~v~~~~~~~---~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~  230 (568)
                       ...+..+.+|....   .......|...| ..++|+  +++..+++++. |+.+++|++...      ..+..+.+|..
T Consensus       129 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  199 (466)
T COG2319         129 SSSLDGTVKLWDLSTPGKLIRTLEGHSESV-TSLAFS--PDGKLLASGSSLDGTIKLWDLRTG------KPLSTLAGHTD  199 (466)
T ss_pred             cCCCCccEEEEEecCCCeEEEEEecCcccE-EEEEEC--CCCCEEEecCCCCCceEEEEcCCC------ceEEeeccCCC
Confidence             23366777777653   445567899998 899999  78888888886 999999999864      67888888999


Q ss_pred             CeeEEEEccCCCCCCCCc-EEEEEcCCC-EEEEECCCCCccee-eeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 008363          231 PIRAVSWAPAESDSDSAN-VILTAGHGG-LKFWDIRDPFRPLW-DIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLL  307 (568)
Q Consensus       231 ~V~~v~~~p~~~~~~~~~-~las~s~d~-v~lwD~~~~~~~~~-~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~  307 (568)
                      .|.+++|+|++      . ++++++.|+ |++||.... ..+. .+..|.... ...|+|++.++++++.|+.+++|+++
T Consensus       200 ~v~~~~~~~~~------~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~  271 (466)
T COG2319         200 PVSSLAFSPDG------GLLIASGSSDGTIRLWDLSTG-KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLR  271 (466)
T ss_pred             ceEEEEEcCCc------ceEEEEecCCCcEEEEECCCC-cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence            99999999887      5 666658888 999998855 5555 677887775 44899999888899999999999996


Q ss_pred             ccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          308 KAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       308 ~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                      ...               ..+..+.+|...|.++.|+|++..+++++.|+.+.+|++.+.....
T Consensus       272 ~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  320 (466)
T COG2319         272 SSS---------------SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS  320 (466)
T ss_pred             CCC---------------cEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence            532               1123336788999999999988888889999999999987665443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=3.1e-14  Score=132.39  Aligned_cols=186  Identities=17%  Similarity=0.256  Sum_probs=130.9

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW  261 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw  261 (568)
                      .|+.|+  +-|.+||+|+.||.|.|||+.+.      .+.+.+.+|..+|.+++|+++|      ++|+|+|.|. |.+|
T Consensus        27 ~~~~Fs--~~G~~lAvGc~nG~vvI~D~~T~------~iar~lsaH~~pi~sl~WS~dg------r~LltsS~D~si~lw   92 (405)
T KOG1273|consen   27 ECCQFS--RWGDYLAVGCANGRVVIYDFDTF------RIARMLSAHVRPITSLCWSRDG------RKLLTSSRDWSIKLW   92 (405)
T ss_pred             ceEEec--cCcceeeeeccCCcEEEEEcccc------chhhhhhccccceeEEEecCCC------CEeeeecCCceeEEE
Confidence            789999  88999999999999999999977      6778899999999999999999      8999999998 9999


Q ss_pred             ECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCCCCCCccCccccceEEE-ec-CCCCE
Q 008363          262 DIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV-NC-SSFAI  338 (568)
Q Consensus       262 D~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~-~~-h~~~V  338 (568)
                      |+..+ .++..+. ...+|+.+.|+|..+..+.+ -.+..-.+-++....      ...        +..- .+ -...-
T Consensus        93 Dl~~g-s~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~------h~~--------Lp~d~d~dln~sa  156 (405)
T KOG1273|consen   93 DLLKG-SPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK------HSV--------LPKDDDGDLNSSA  156 (405)
T ss_pred             eccCC-CceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc------eee--------ccCCCcccccccc
Confidence            99998 6776663 47889999999965444433 234445555553211      000        0000 00 01111


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEccc
Q 008363          339 WSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTP  398 (568)
Q Consensus       339 ~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~  398 (568)
                      .+..|.+.|++|++|..-|.+.+++..+.++.....-.....+.-..++..+..+.+++.
T Consensus       157 s~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts  216 (405)
T KOG1273|consen  157 SHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS  216 (405)
T ss_pred             ccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC
Confidence            233688999999999999999999998876543321111122222235566666666543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.59  E-value=4e-14  Score=139.98  Aligned_cols=195  Identities=21%  Similarity=0.258  Sum_probs=141.9

Q ss_pred             CCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEE
Q 008363          156 GTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAV  235 (568)
Q Consensus       156 ~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v  235 (568)
                      .++.++..+....+.......|.+.+ .+-.|+  ++|.-|++++.||.|++|.-..       -...++.....+|+|+
T Consensus        82 s~DGkf~il~k~~rVE~sv~AH~~A~-~~gRW~--~dGtgLlt~GEDG~iKiWSrsG-------MLRStl~Q~~~~v~c~  151 (737)
T KOG1524|consen   82 SNDGRFVILNKSARVERSISAHAAAI-SSGRWS--PDGAGLLTAGEDGVIKIWSRSG-------MLRSTVVQNEESIRCA  151 (737)
T ss_pred             cCCceEEEecccchhhhhhhhhhhhh-hhcccC--CCCceeeeecCCceEEEEeccc-------hHHHHHhhcCceeEEE
Confidence            34444444444444455567899999 999999  9999999999999999999552       2333444557789999


Q ss_pred             EEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCC
Q 008363          236 SWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPA  315 (568)
Q Consensus       236 ~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~  315 (568)
                      +|.|+.      +-++-|..+.+.|=-+... ..+.....|.+-|.++.|+|....|++||+|-..++||-         
T Consensus       152 ~W~p~S------~~vl~c~g~h~~IKpL~~n-~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~---------  215 (737)
T KOG1524|consen  152 RWAPNS------NSIVFCQGGHISIKPLAAN-SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA---------  215 (737)
T ss_pred             EECCCC------CceEEecCCeEEEeecccc-cceeEEeccCcEEEEeecCccccceeecCCceeEEeecc---------
Confidence            999998      4555555555666666544 445567799999999999999999999999999999998         


Q ss_pred             CCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEE
Q 008363          316 TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITV  395 (568)
Q Consensus       316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~  395 (568)
                      .|..        +..-..|..+|++++|.|+ ..++.+|.. +++        +    +..+...+...++++||..++.
T Consensus       216 ~G~~--------Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R--------~----~~p~~GSifnlsWS~DGTQ~a~  273 (737)
T KOG1524|consen  216 QGAN--------LFTSAAEEYAITSVAFNPE-KDYLLWSYN-TAR--------F----SSPRVGSIFNLSWSADGTQATC  273 (737)
T ss_pred             cCcc--------cccCChhccceeeeeeccc-cceeeeeee-eee--------e----cCCCccceEEEEEcCCCceeec
Confidence            3543        3566779999999999998 555555532 333        2    2334555556678888877766


Q ss_pred             ccc
Q 008363          396 NTP  398 (568)
Q Consensus       396 ~~~  398 (568)
                      ++.
T Consensus       274 gt~  276 (737)
T KOG1524|consen  274 GTS  276 (737)
T ss_pred             ccc
Confidence            543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.58  E-value=1.3e-14  Score=139.17  Aligned_cols=164  Identities=19%  Similarity=0.306  Sum_probs=136.3

Q ss_pred             CccceEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCC---CCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363          179 QSIPLTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSI---DSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG  254 (568)
Q Consensus       179 ~~V~~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~---~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s  254 (568)
                      .++ +++.|.  +++. .|++|+.|..|+||-+.......   ....+..+..|...|+++.|+|+|      .+||||+
T Consensus        14 ~pv-~s~dfq--~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g------elLASg~   84 (434)
T KOG1009|consen   14 EPV-YSVDFQ--KNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG------ELLASGG   84 (434)
T ss_pred             Cce-EEEEec--cCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc------CeeeecC
Confidence            455 889988  4444 99999999999999998665433   334566788999999999999999      9999999


Q ss_pred             CCC-EEEEECC--------C-----C-C-cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCC
Q 008363          255 HGG-LKFWDIR--------D-----P-F-RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGK  318 (568)
Q Consensus       255 ~d~-v~lwD~~--------~-----~-~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~  318 (568)
                      +++ |.+|-..        +     . . .....+.+|...|+.++|+|++.++++++.|+.+++||+.        .|+
T Consensus        85 D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~--------~G~  156 (434)
T KOG1009|consen   85 DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH--------AGQ  156 (434)
T ss_pred             CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec--------cce
Confidence            999 9999765        2     1 0 2235667899999999999999999999999999999994        475


Q ss_pred             CccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363          319 PFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       319 ~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~  367 (568)
                      .+        ..+..|..-|..++|.|.++++++-+.|...+.+.+...
T Consensus       157 l~--------~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~  197 (434)
T KOG1009|consen  157 LL--------AILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLK  197 (434)
T ss_pred             eE--------eeccccccccceeecchhhhhhhhhccCcccceeeeeee
Confidence            54        588899999999999999999999999997777776543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=5.4e-14  Score=132.30  Aligned_cols=149  Identities=15%  Similarity=0.215  Sum_probs=121.7

Q ss_pred             CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCc-cee
Q 008363          194 DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFR-PLW  271 (568)
Q Consensus       194 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~-~~~  271 (568)
                      ..+|++...|+|++||..++      +.+..|++|...++.+.|....    +++.+.+|+.|| |++||+|...+ ...
T Consensus        41 ~~vav~lSngsv~lyd~~tg------~~l~~fk~~~~~~N~vrf~~~d----s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~  110 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTG------QLLEEFKGPPATTNGVRFISCD----SPHGVISCSSDGTVRLWDIRSQAESARI  110 (376)
T ss_pred             eeEEEEecCCeEEEEeccch------hhhheecCCCCcccceEEecCC----CCCeeEEeccCCeEEEEEeecchhhhhe
Confidence            47999999999999999976      7889999999999999998864    468999999999 99999998743 334


Q ss_pred             eeCCCC-CCeEEEEEcCCCCEEEEEeC----CCcEEEEEccccccCCCCCCCCccCccccceE-EEecCCCCEEEEEEec
Q 008363          272 DIHPAP-KFIYGLDWLPDPGCVILSFD----DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH-LVNCSSFAIWSVQVSR  345 (568)
Q Consensus       272 ~~~~h~-~~i~~l~~sp~~~~l~s~~~----dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~-~~~~h~~~V~~l~~sp  345 (568)
                      ....|+ .+..+++..-.++.+++|..    +-.|.+||+|+..               +.+. ....|..-|++|+|+|
T Consensus       111 ~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q---------------q~l~~~~eSH~DDVT~lrFHP  175 (376)
T KOG1188|consen  111 SWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ---------------QLLRQLNESHNDDVTQLRFHP  175 (376)
T ss_pred             eccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc---------------chhhhhhhhccCcceeEEecC
Confidence            455555 35577877767788888754    7789999998744               2223 4467999999999999


Q ss_pred             CC-CEEEEEeCCCeEEEEEcCCC
Q 008363          346 LT-GMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       346 ~~-~~l~s~s~Dg~v~iwd~~~~  367 (568)
                      .. .+|++||.||.|.+||+...
T Consensus       176 ~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  176 SDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             CCCCeEEeecccceEEeeecCCC
Confidence            85 89999999999999999644

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.56  E-value=4.8e-14  Score=139.46  Aligned_cols=183  Identities=16%  Similarity=0.290  Sum_probs=138.0

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC  175 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~  175 (568)
                      .+|.+.+. +-+|+|+|          .-|++++.||.|++|.-... ...++                          .
T Consensus       101 ~AH~~A~~-~gRW~~dG----------tgLlt~GEDG~iKiWSrsGM-LRStl--------------------------~  142 (737)
T KOG1524|consen  101 SAHAAAIS-SGRWSPDG----------AGLLTAGEDGVIKIWSRSGM-LRSTV--------------------------V  142 (737)
T ss_pred             hhhhhhhh-hcccCCCC----------ceeeeecCCceEEEEeccch-HHHHH--------------------------h
Confidence            37888555 99999999          68999999999999986651 11111                          3


Q ss_pred             CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363          176 GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH  255 (568)
Q Consensus       176 ~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~  255 (568)
                      ....+| +|++|.  |+.+.++-+- .+.+.|=.+...      ..+..+++|.+-|.++.|++..      ++++||++
T Consensus       143 Q~~~~v-~c~~W~--p~S~~vl~c~-g~h~~IKpL~~n------~k~i~WkAHDGiiL~~~W~~~s------~lI~sgGE  206 (737)
T KOG1524|consen  143 QNEESI-RCARWA--PNSNSIVFCQ-GGHISIKPLAAN------SKIIRWRAHDGLVLSLSWSTQS------NIIASGGE  206 (737)
T ss_pred             hcCcee-EEEEEC--CCCCceEEec-CCeEEEeecccc------cceeEEeccCcEEEEeecCccc------cceeecCC
Confidence            445677 999999  5554444433 356666666544      4556788999999999999998      89999999


Q ss_pred             CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363          256 GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS  334 (568)
Q Consensus       256 d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h  334 (568)
                      |- .++||-..  .+++.-..|..+|++++|.|+ ..++.++. +++|+=                           ...
T Consensus       207 D~kfKvWD~~G--~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~~---------------------------~p~  255 (737)
T KOG1524|consen  207 DFRFKIWDAQG--ANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARFS---------------------------SPR  255 (737)
T ss_pred             ceeEEeecccC--cccccCChhccceeeeeeccc-cceeeeee-eeeeec---------------------------CCC
Confidence            98 99999874  678777889999999999999 54554443 334311                           124


Q ss_pred             CCCEEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363          335 SFAIWSVQVSRLTGMVAYCSADGTVHRFQ  363 (568)
Q Consensus       335 ~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd  363 (568)
                      .+.|..++||+||..++.|+..|.+.+=.
T Consensus       256 ~GSifnlsWS~DGTQ~a~gt~~G~v~~A~  284 (737)
T KOG1524|consen  256 VGSIFNLSWSADGTQATCGTSTGQLIVAY  284 (737)
T ss_pred             ccceEEEEEcCCCceeeccccCceEEEee
Confidence            56789999999999999999999876643

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.56  E-value=3e-12  Score=121.92  Aligned_cols=202  Identities=19%  Similarity=0.338  Sum_probs=140.5

Q ss_pred             EEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEe--C
Q 008363          124 YLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC--H  201 (568)
Q Consensus       124 ~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs--~  201 (568)
                      .|+++-.+ .|+|||+.+.+.+.++...                       ..+...+   ++++|++.+.+||--+  .
T Consensus        99 RLvV~Lee-~IyIydI~~MklLhTI~t~-----------------------~~n~~gl---~AlS~n~~n~ylAyp~s~t  151 (391)
T KOG2110|consen   99 RLVVCLEE-SIYIYDIKDMKLLHTIETT-----------------------PPNPKGL---CALSPNNANCYLAYPGSTT  151 (391)
T ss_pred             eEEEEEcc-cEEEEecccceeehhhhcc-----------------------CCCccce---EeeccCCCCceEEecCCCC
Confidence            46666654 4999999998888776211                       1233333   4455557777877533  4


Q ss_pred             CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC--EEEEECCCCCcceeeeCCC--C
Q 008363          202 DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG--LKFWDIRDPFRPLWDIHPA--P  277 (568)
Q Consensus       202 Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~--v~lwD~~~~~~~~~~~~~h--~  277 (568)
                      .|.|.|||+.+-      +++..+.+|.+.+.+++|+++|      .+|||+|+.|  |||+.+.++ ..+..|+.-  .
T Consensus       152 ~GdV~l~d~~nl------~~v~~I~aH~~~lAalafs~~G------~llATASeKGTVIRVf~v~~G-~kl~eFRRG~~~  218 (391)
T KOG2110|consen  152 SGDVVLFDTINL------QPVNTINAHKGPLAALAFSPDG------TLLATASEKGTVIRVFSVPEG-QKLYEFRRGTYP  218 (391)
T ss_pred             CceEEEEEcccc------eeeeEEEecCCceeEEEECCCC------CEEEEeccCceEEEEEEcCCc-cEeeeeeCCcee
Confidence            689999999865      8899999999999999999999      8999999987  999999988 666666522  3


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCC---CCCCccCcc------------------ccceEEEecCCC
Q 008363          278 KFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPA---TGKPFAGTK------------------QQGLHLVNCSSF  336 (568)
Q Consensus       278 ~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~---~g~~~~~~~------------------~~~l~~~~~h~~  336 (568)
                      ..|++|+|+|++.+|++.+..++|++|.+.....+.+.   .+....+.-                  ...+.......+
T Consensus       219 ~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s  298 (391)
T KOG2110|consen  219 VSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPES  298 (391)
T ss_pred             eEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCC
Confidence            45789999999999999999999999999776543222   111110000                  000111111111


Q ss_pred             CE-EEEEEe--cCCCEEEEEeCCCeEEEEEcC
Q 008363          337 AI-WSVQVS--RLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       337 ~V-~~l~~s--p~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      .. ..+.+.  +...++..++.||.++.|.+.
T Consensus       299 ~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~  330 (391)
T KOG2110|consen  299 GRKNICSLSSIQKIPRVLVASYDGHLYSYRLP  330 (391)
T ss_pred             CccceEEeeccCCCCEEEEEEcCCeEEEEEcC
Confidence            21 222333  456889999999999999884

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=6.6e-13  Score=133.21  Aligned_cols=202  Identities=16%  Similarity=0.204  Sum_probs=143.9

Q ss_pred             ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcE
Q 008363          170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV  249 (568)
Q Consensus       170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~  249 (568)
                      |...+.||++.| .+|.-.  +.|.+|++|+.||+|+||.+.++      .|++++.- .+.|.||+|+|.+    .-.+
T Consensus       392 ~~lvyrGHtg~V-r~iSvd--p~G~wlasGsdDGtvriWEi~Tg------Rcvr~~~~-d~~I~~vaw~P~~----~~~v  457 (733)
T KOG0650|consen  392 CALVYRGHTGLV-RSISVD--PSGEWLASGSDDGTVRIWEIATG------RCVRTVQF-DSEIRSVAWNPLS----DLCV  457 (733)
T ss_pred             eeeeEeccCCeE-EEEEec--CCcceeeecCCCCcEEEEEeecc------eEEEEEee-cceeEEEEecCCC----Ccee
Confidence            556678999999 999977  78999999999999999999988      88887743 5679999999987    2334


Q ss_pred             EEEEcCCCEEEEECCCC------------------------------------CcceeeeCCCCCCeEEEEEcCCCCEEE
Q 008363          250 ILTAGHGGLKFWDIRDP------------------------------------FRPLWDIHPAPKFIYGLDWLPDPGCVI  293 (568)
Q Consensus       250 las~s~d~v~lwD~~~~------------------------------------~~~~~~~~~h~~~i~~l~~sp~~~~l~  293 (568)
                      ||.+-...+.|-+..-+                                    ..-+...-.|...|..|.|+..|.||+
T Consensus       458 LAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYla  537 (733)
T KOG0650|consen  458 LAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLA  537 (733)
T ss_pred             EEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEE
Confidence            44443333333332111                                    011122235778899999999999999


Q ss_pred             EEeC---CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee
Q 008363          294 LSFD---DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE  370 (568)
Q Consensus       294 s~~~---dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~  370 (568)
                      +..-   ...|.|+++.+..        .        ...|....+.|.++.|+|...+|++++ -..|+|||+....+.
T Consensus       538 tV~~~~~~~~VliHQLSK~~--------s--------Q~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelv  600 (733)
T KOG0650|consen  538 TVMPDSGNKSVLIHQLSKRK--------S--------QSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELV  600 (733)
T ss_pred             EeccCCCcceEEEEeccccc--------c--------cCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHH
Confidence            9744   4578999996522        0        123444567789999999998888887 458999999776554


Q ss_pred             ccCCCCCcceeeeecccCCCCceEEcccCCCCC
Q 008363          371 KDHSRNRPMHFLCGSVTEDESAITVNTPLDNTP  403 (568)
Q Consensus       371 ~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~  403 (568)
                      +. .......+...++.+.|..|+++++...+-
T Consensus       601 Kk-L~tg~kwiS~msihp~GDnli~gs~d~k~~  632 (733)
T KOG0650|consen  601 KK-LLTGSKWISSMSIHPNGDNLILGSYDKKMC  632 (733)
T ss_pred             HH-HhcCCeeeeeeeecCCCCeEEEecCCCeeE
Confidence            43 122223344447888889999988777663

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=2.6e-13  Score=122.06  Aligned_cols=217  Identities=19%  Similarity=0.243  Sum_probs=142.5

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      |++-+|+|.+          ++|++|..+|.|.+..+......         +...+....+.+       ..+|.+++ 
T Consensus        13 vf~qa~sp~~----------~~l~agn~~G~iav~sl~sl~s~---------sa~~~gk~~iv~-------eqahdgpi-   65 (325)
T KOG0649|consen   13 VFAQAISPSK----------QYLFAGNLFGDIAVLSLKSLDSG---------SAEPPGKLKIVP-------EQAHDGPI-   65 (325)
T ss_pred             HHHHhhCCcc----------eEEEEecCCCeEEEEEehhhhcc---------ccCCCCCcceee-------ccccCCCe-
Confidence            3477899999          89999999999999998762111         001111111111       27899999 


Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe--eCC-----CCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF--SAD-----TLPIRAVSWAPAESDSDSANVILTAGH  255 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~--~~h-----~~~V~~v~~~p~~~~~~~~~~las~s~  255 (568)
                      +.++|.   + ++|++|+ ||.|+-|..+....+...+.+...  .-|     -..|+++-..|..      +-++.++.
T Consensus        66 y~~~f~---d-~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e------nSi~~AgG  134 (325)
T KOG0649|consen   66 YYLAFH---D-DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE------NSILFAGG  134 (325)
T ss_pred             eeeeee---h-hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC------CcEEEecC
Confidence            999988   3 5788887 599999987644322111221111  112     2358899999887      55666667


Q ss_pred             CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcc-ccceEEEec
Q 008363          256 GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTK-QQGLHLVNC  333 (568)
Q Consensus       256 d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~-~~~l~~~~~  333 (568)
                      |+ ++-||+.++ +..+++++|++.|.++.--.....|++|++||++|+||+++        ++.+...+ ++.-..+..
T Consensus       135 D~~~y~~dlE~G-~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt--------~k~v~~ie~yk~~~~lRp  205 (325)
T KOG0649|consen  135 DGVIYQVDLEDG-RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT--------QKHVSMIEPYKNPNLLRP  205 (325)
T ss_pred             CeEEEEEEecCC-EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc--------cceeEEeccccChhhcCc
Confidence            77 999999998 88889999999999998855556699999999999999954        44431000 000001122


Q ss_pred             CCC-CEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363          334 SSF-AIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV  369 (568)
Q Consensus       334 h~~-~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~  369 (568)
                      |.+ .|-+++.  +..+|+.|+ .-.+.+|.+...+.
T Consensus       206 ~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~  239 (325)
T KOG0649|consen  206 DWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSES  239 (325)
T ss_pred             ccCceeEEEec--cCceEEecC-CCceeEEeccCCCc
Confidence            222 3444444  455666555 56799999976543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.55  E-value=5.1e-13  Score=141.80  Aligned_cols=226  Identities=13%  Similarity=0.177  Sum_probs=163.5

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-------------------ccCCCCceEE
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-------------------KEGTDPRFVK  163 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-------------------~~~~~~~~v~  163 (568)
                      ...+.|+|-.          ..++++.+.-.|+|||.+.++++..+.....                   ..++.++.|+
T Consensus      1067 pk~~~~hpf~----------p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIR 1136 (1387)
T KOG1517|consen 1067 PKTLKFHPFE----------PQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIR 1136 (1387)
T ss_pred             CceeeecCCC----------ceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEE
Confidence            3357888877          5888888888999999999888776644332                   5688999999


Q ss_pred             Eeecceec--------------ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe-eCC
Q 008363          164 LEPVFRCS--------------MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF-SAD  228 (568)
Q Consensus       164 ~~~~~~~~--------------~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h  228 (568)
                      +|..+...              ....+-.+. +.-++|.  ....+|++++.-..|+|||....      ..+..+ .+-
T Consensus      1137 Iwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~-~~v~dWq--Q~~G~Ll~tGd~r~IRIWDa~~E------~~~~diP~~s 1207 (1387)
T KOG1517|consen 1137 IWKDYADKWKKPELVTAWSSLSDQLPGARGT-GLVVDWQ--QQSGHLLVTGDVRSIRIWDAHKE------QVVADIPYGS 1207 (1387)
T ss_pred             EecccccccCCceeEEeeccccccCccCCCC-Ceeeehh--hhCCeEEecCCeeEEEEEecccc------eeEeecccCC
Confidence            99876521              011111122 2457888  45557777777889999999865      444433 234


Q ss_pred             CCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCc--ceeeeCCCCCC--eEEEEEcCCCCE-EEEEeCCCcEE
Q 008363          229 TLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFR--PLWDIHPAPKF--IYGLDWLPDPGC-VILSFDDGAMR  302 (568)
Q Consensus       229 ~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~--~~~~~~~h~~~--i~~l~~sp~~~~-l~s~~~dg~I~  302 (568)
                      +..|+++.-+-..     .++|+.|-.|| |++||.|....  .+...+.|...  |..+.+.+.|-. |++|+.||.|+
T Consensus      1208 ~t~vTaLS~~~~~-----gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~ 1282 (1387)
T KOG1517|consen 1208 STLVTALSADLVH-----GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQ 1282 (1387)
T ss_pred             CccceeecccccC-----CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEE
Confidence            4557777544333     38999999999 99999997653  45667788877  999999987655 99999999999


Q ss_pred             EEEccccccCCCCCCCCccCccccceEEEecCC--C-CEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363          303 IVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS--F-AIWSVQVSRLTGMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       303 lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~--~-~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~  367 (568)
                      +||+|....              ....++..|.  + .++++..|+....||+|+. +.|+||++...
T Consensus      1283 ~~DlR~~~~--------------e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1283 LLDLRMSSK--------------ETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred             EEecccCcc--------------cccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh
Confidence            999986320              1112333343  3 5899999999999999998 99999999654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.55  E-value=2.7e-13  Score=143.87  Aligned_cols=222  Identities=14%  Similarity=0.127  Sum_probs=158.1

Q ss_pred             cEEEEEeCCCcEEEEECCC-----CceeeEEeccCC---------------------ccCCCCceEEEeecce---eccc
Q 008363          123 GYLAVLLGNGSLEVWEVPL-----LRTMKAIYLSSM---------------------KEGTDPRFVKLEPVFR---CSML  173 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~-----~~~~~~l~~~~~---------------------~~~~~~~~v~~~~~~~---~~~~  173 (568)
                      .+|++|+.||.|+||+-..     .+.+..+.+-..                     ..+++-++|++|+...   +...
T Consensus      1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~di 1203 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADI 1203 (1387)
T ss_pred             hheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeec
Confidence            6899999999999997432     222222222111                     3345588999999877   3334


Q ss_pred             ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCC--eeEEEEccCCCCCCCCcEEE
Q 008363          174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLP--IRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~--V~~v~~~p~~~~~~~~~~la  251 (568)
                      ..+....| +++.-+. ..|+.|++|..||.|++||.+....   ...+..++.|+..  |..+.+.+.|-     .-|+
T Consensus      1204 P~~s~t~v-TaLS~~~-~~gn~i~AGfaDGsvRvyD~R~a~~---ds~v~~~R~h~~~~~Iv~~slq~~G~-----~elv 1273 (1387)
T KOG1517|consen 1204 PYGSSTLV-TALSADL-VHGNIIAAGFADGSVRVYDRRMAPP---DSLVCVYREHNDVEPIVHLSLQRQGL-----GELV 1273 (1387)
T ss_pred             ccCCCccc-eeecccc-cCCceEEEeecCCceEEeecccCCc---cccceeecccCCcccceeEEeecCCC-----ccee
Confidence            44555555 7776432 2478999999999999999986532   2466788899988  99999999872     3599


Q ss_pred             EEcCCC-EEEEECCCCC-cceeeeCCCC---CCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcccc
Q 008363          252 TAGHGG-LKFWDIRDPF-RPLWDIHPAP---KFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQ  326 (568)
Q Consensus       252 s~s~d~-v~lwD~~~~~-~~~~~~~~h~---~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~  326 (568)
                      +|+.+| |++||+|... .....+..|.   +.++++..+++...|++|+. +.|+||++         .|+.+...+..
T Consensus      1274 Sgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~---------~G~~l~~~k~n 1343 (1387)
T KOG1517|consen 1274 SGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL---------SGEQLNIIKYN 1343 (1387)
T ss_pred             eeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEec---------ChhhhcccccC
Confidence            999999 9999999842 2223333332   35899999999999999988 99999998         35444211111


Q ss_pred             ceEEEe-cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          327 GLHLVN-CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       327 ~l~~~~-~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                      +  .|. ...+.+.|++|||.--+||+|+.|.+|.||....
T Consensus      1344 ~--~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1344 P--GFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred             c--ccccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence            0  111 1235679999999999999999999999998754

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.55  E-value=4.2e-12  Score=131.28  Aligned_cols=210  Identities=19%  Similarity=0.379  Sum_probs=163.1

Q ss_pred             ceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeC-CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecc
Q 008363           90 PRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLG-NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVF  168 (568)
Q Consensus        90 p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~-dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~  168 (568)
                      ........|.. .+..++|+|++          .++++++. |+.+++|++..+..+..+                    
T Consensus       146 ~~~~~~~~~~~-~v~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  194 (466)
T COG2319         146 KLIRTLEGHSE-SVTSLAFSPDG----------KLLASGSSLDGTIKLWDLRTGKPLSTL--------------------  194 (466)
T ss_pred             eEEEEEecCcc-cEEEEEECCCC----------CEEEecCCCCCceEEEEcCCCceEEee--------------------
Confidence            34455677888 55599999999          68888885 999999999986666555                    


Q ss_pred             eecccccCCcCccceEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCCCCceeE-EeeCCCCCeeEEEEccCCCCCCC
Q 008363          169 RCSMLKCGGTQSIPLTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSIDSRPLL-CFSADTLPIRAVSWAPAESDSDS  246 (568)
Q Consensus       169 ~~~~~~~~h~~~V~~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~~V~~v~~~p~~~~~~~  246 (568)
                            .+|...| .+++|+  |++. .+++++.|+.|++||...+      ..+. .+.+|...+ ...|++++     
T Consensus       195 ------~~~~~~v-~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~------~~~~~~~~~~~~~~-~~~~~~~~-----  253 (466)
T COG2319         195 ------AGHTDPV-SSLAFS--PDGGLLIASGSSDGTIRLWDLSTG------KLLRSTLSGHSDSV-VSSFSPDG-----  253 (466)
T ss_pred             ------ccCCCce-EEEEEc--CCcceEEEEecCCCcEEEEECCCC------cEEeeecCCCCcce-eEeECCCC-----
Confidence                  6688888 999999  7777 5555599999999987744      5555 688888875 44899997     


Q ss_pred             CcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccc
Q 008363          247 ANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQ  325 (568)
Q Consensus       247 ~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~  325 (568)
                       .++++++.|+ +++||++.....+..+..|...+.++.|+|++..+++++.|+.+.+||...        +...     
T Consensus       254 -~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~--------~~~~-----  319 (466)
T COG2319         254 -SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET--------GKLL-----  319 (466)
T ss_pred             -CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCC--------CceE-----
Confidence             7899999999 999999977443444467889999999999999999988899999998854        2211     


Q ss_pred             cceEEE--ecCCCCEEEEEEecCCCEEEEE-eCCCeEEEEEcCCCe
Q 008363          326 QGLHLV--NCSSFAIWSVQVSRLTGMVAYC-SADGTVHRFQLTAKA  368 (568)
Q Consensus       326 ~~l~~~--~~h~~~V~~l~~sp~~~~l~s~-s~Dg~v~iwd~~~~~  368 (568)
                         ...  ..|...|..+.|.+++..++.+ ..|+.+.+|++....
T Consensus       320 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         320 ---SSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             ---EEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence               222  3677789999994332455555 688999999997665

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.54  E-value=4.6e-13  Score=135.59  Aligned_cols=235  Identities=17%  Similarity=0.242  Sum_probs=160.9

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCC
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGT  157 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~  157 (568)
                      +....+|.+ .|++|+|+.+|          ..+|+|+.|..|.||+-.-...++  +.|..              ++++
T Consensus        46 lqtLKgHKD-tVycVAys~dG----------krFASG~aDK~VI~W~~klEG~Lk--YSH~D~IQCMsFNP~~h~LasCs  112 (1081)
T KOG1538|consen   46 LQPLKGHKD-TVYCVAYAKDG----------KRFASGSADKSVIIWTSKLEGILK--YSHNDAIQCMSFNPITHQLASCS  112 (1081)
T ss_pred             ccccccccc-eEEEEEEccCC----------ceeccCCCceeEEEecccccceee--eccCCeeeEeecCchHHHhhhcc
Confidence            344679999 66799999999          899999999999999876522221  12221              1111


Q ss_pred             CCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEE
Q 008363          158 DPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSW  237 (568)
Q Consensus       158 ~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~  237 (568)
                      .. -+.+|....-..........+ .+.+|.  .||++|+.|-.||+|.|-+-...    ....+..-.+.+++|.+|+|
T Consensus       113 Ls-dFglWS~~qK~V~K~kss~R~-~~CsWt--nDGqylalG~~nGTIsiRNk~gE----ek~~I~Rpgg~Nspiwsi~~  184 (1081)
T KOG1538|consen  113 LS-DFGLWSPEQKSVSKHKSSSRI-ICCSWT--NDGQYLALGMFNGTISIRNKNGE----EKVKIERPGGSNSPIWSICW  184 (1081)
T ss_pred             hh-hccccChhhhhHHhhhhheeE-EEeeec--CCCcEEEEeccCceEEeecCCCC----cceEEeCCCCCCCCceEEEe
Confidence            11 112222221111112223344 788998  99999999999999999865432    11233334467889999999


Q ss_pred             ccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCC
Q 008363          238 APAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPAT  316 (568)
Q Consensus       238 ~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~  316 (568)
                      +|.. .......++....+. +.++.+...  .+..-..-.-...|+.+.|+|.+++.||.|+.+.+|-..         
T Consensus       185 ~p~s-g~G~~di~aV~DW~qTLSFy~LsG~--~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~---------  252 (1081)
T KOG1538|consen  185 NPSS-GEGRNDILAVADWGQTLSFYQLSGK--QIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD---------  252 (1081)
T ss_pred             cCCC-CCCccceEEEEeccceeEEEEecce--eecccccCCCCchhheeccCCcEEEEccCCCceEEEeec---------
Confidence            9985 233446777777776 888877743  221111112234689999999999999999999999762         


Q ss_pred             CCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363          317 GKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       317 g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~  367 (568)
                      |-        .+.++......||.++..|++++++.|+.||+|-.|++-..
T Consensus       253 Gv--------rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS  295 (1081)
T KOG1538|consen  253 GV--------RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS  295 (1081)
T ss_pred             Ce--------EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence            32        23455556678999999999999999999999999998543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=3.2e-14  Score=141.03  Aligned_cols=173  Identities=16%  Similarity=0.200  Sum_probs=135.9

Q ss_pred             cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEE-eeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363          173 LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLC-FSADTLPIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~-~~~h~~~V~~v~~~p~~~~~~~~~~la  251 (568)
                      .+.||++.| .|++|+  .+|.+|++|+.|-.+.|||.-..      ++++. -.+|...|.++.|-|..    +..+++
T Consensus        45 eL~GH~GCV-N~LeWn--~dG~lL~SGSDD~r~ivWd~~~~------KllhsI~TgHtaNIFsvKFvP~t----nnriv~  111 (758)
T KOG1310|consen   45 ELTGHTGCV-NCLEWN--ADGELLASGSDDTRLIVWDPFEY------KLLHSISTGHTANIFSVKFVPYT----NNRIVL  111 (758)
T ss_pred             hhcccccee-cceeec--CCCCEEeecCCcceEEeecchhc------ceeeeeecccccceeEEeeeccC----CCeEEE
Confidence            448999999 999999  99999999999999999998755      55554 46899999999999987    567899


Q ss_pred             EEcCCC-EEEEECCCC---------CcceeeeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEccccccCCCCCCCCc
Q 008363          252 TAGHGG-LKFWDIRDP---------FRPLWDIHPAPKFIYGLDWLPDP-GCVILSFDDGAMRIVSLLKAAYDVPATGKPF  320 (568)
Q Consensus       252 s~s~d~-v~lwD~~~~---------~~~~~~~~~h~~~i~~l~~sp~~-~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~  320 (568)
                      ||..|. |+++|+...         ..+...+..|...|..|+-.|++ ..+.++++||+|+-||+|....-.|..+-+ 
T Consensus       112 sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~-  190 (758)
T KOG1310|consen  112 SGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP-  190 (758)
T ss_pred             eccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc-
Confidence            999999 999999852         24445566788899999999998 788899999999999998743211111111 


Q ss_pred             cCccccceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEc
Q 008363          321 AGTKQQGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQL  364 (568)
Q Consensus       321 ~~~~~~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~  364 (568)
                           ..+..+...--...++..+|.. .+|++|+.|-..++||.
T Consensus       191 -----~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  191 -----SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             -----HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence                 1122222223456789999985 88999999999999995

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.51  E-value=2.3e-13  Score=135.87  Aligned_cols=266  Identities=13%  Similarity=0.161  Sum_probs=174.4

Q ss_pred             cEEEEEeCCCcEEEE--ECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEe
Q 008363          123 GYLAVLLGNGSLEVW--EVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC  200 (568)
Q Consensus       123 ~~las~s~dg~V~iw--d~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs  200 (568)
                      .++++...+....+|  ++........+.   ..+...+.+.+-|.+.   .++..|...| ..++|.  +....|++|+
T Consensus       243 ~~~~g~d~~l~~~l~~~tla~l~I~~~~d---d~~~~k~a~~k~w~ik---~tl~s~~d~i-r~l~~~--~sep~lit~s  313 (577)
T KOG0642|consen  243 SISVGADEDLMSRLGLGTLAGLTIEDEFD---DLSDLKKAFTKKWNIK---FTLRSHDDCI-RALAFH--PSEPVLITAS  313 (577)
T ss_pred             CccccCchHHHHhhcccchhccccccccc---chhhhhhhhheeccee---eeeecchhhh-hhhhcC--CCCCeEEEec
Confidence            567777778888888  544321111110   0111111122223221   1447788888 999988  5566999999


Q ss_pred             CCCeEEEEEccCCCC--CCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCC------C---c
Q 008363          201 HDGTVALWKFVASDS--SIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDP------F---R  268 (568)
Q Consensus       201 ~Dg~I~iwd~~~~~~--~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~------~---~  268 (568)
                      .||+|.+|++.....  ....+++.+|.+|.++|.|+++.+.+      ..+.+|+.|+ |+.|++...      .   .
T Consensus       314 ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~------~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~v  387 (577)
T KOG0642|consen  314 EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNG------EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSV  387 (577)
T ss_pred             cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCc------eEEEeeccCceeeeeccCCCCCcccccCcch
Confidence            999999999943211  23567899999999999999999999      8999999999 999955421      1   2


Q ss_pred             ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccccc---CCCC-CCCCcc--Ccc------------------
Q 008363          269 PLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAY---DVPA-TGKPFA--GTK------------------  324 (568)
Q Consensus       269 ~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~---~~~~-~g~~~~--~~~------------------  324 (568)
                      ....+.||.+.|+.+++|+....|++++.||+|++|+......   ..+. .|-++-  .+.                  
T Consensus       388 l~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~  467 (577)
T KOG0642|consen  388 LSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSID  467 (577)
T ss_pred             hccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccch
Confidence            2356779999999999999999999999999999998744221   0000 010000  000                  


Q ss_pred             ----ccceEEEecC-------CCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCce
Q 008363          325 ----QQGLHLVNCS-------SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAI  393 (568)
Q Consensus       325 ----~~~l~~~~~h-------~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i  393 (568)
                          .+.+..+...       ...+.-+.++|...+.+++..|+.|+++|..++........+. ..+.+-++.+.+-.+
T Consensus       468 ~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~-~svtslai~~ng~~l  546 (577)
T KOG0642|consen  468 DMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHK-DSVTSLAIDPNGPYL  546 (577)
T ss_pred             hhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeecc-ceecceeecCCCceE
Confidence                0011111111       1245678899999999999999999999998887765533222 233444566666667


Q ss_pred             EEcccCCCCCc
Q 008363          394 TVNTPLDNTPV  404 (568)
Q Consensus       394 ~~~~~~~~~~~  404 (568)
                      .+++....+.+
T Consensus       547 ~s~s~d~sv~l  557 (577)
T KOG0642|consen  547 MSGSHDGSVRL  557 (577)
T ss_pred             EeecCCceeeh
Confidence            66666655533

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.51  E-value=3.3e-13  Score=133.81  Aligned_cols=167  Identities=14%  Similarity=0.193  Sum_probs=126.6

Q ss_pred             CccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCC----------------------CCCceeEEeeCCCCCeeEEE
Q 008363          179 QSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSS----------------------IDSRPLLCFSADTLPIRAVS  236 (568)
Q Consensus       179 ~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~----------------------~~~~~~~~~~~h~~~V~~v~  236 (568)
                      ..| +|+.|-|..+ ..++++..+|.+.++|..-....                      ....++..+.--.+.|+.++
T Consensus       220 tsv-T~ikWvpg~~-~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~  297 (636)
T KOG2394|consen  220 SSV-TCIKWVPGSD-SLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFA  297 (636)
T ss_pred             cce-EEEEEEeCCC-ceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccccee
Confidence            556 9999997655 47888888999999976321110                      01123333333356799999


Q ss_pred             EccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCC
Q 008363          237 WAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPA  315 (568)
Q Consensus       237 ~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~  315 (568)
                      |+|+|      .+||+.+.|+ +||||..+. ..+..++..-+...|++|||||+||++|++|..|.||.+.        
T Consensus       298 FS~DG------~~LA~VSqDGfLRvF~fdt~-eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~--------  362 (636)
T KOG2394|consen  298 FSPDG------KYLATVSQDGFLRIFDFDTQ-ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE--------  362 (636)
T ss_pred             EcCCC------ceEEEEecCceEEEeeccHH-HHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec--------
Confidence            99999      8999999999 999999876 5555555667788999999999999999999999999993        


Q ss_pred             CCCCccCccccceEEEecCCCCEEEEEEecCC------------------------------------------------
Q 008363          316 TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT------------------------------------------------  347 (568)
Q Consensus       316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~------------------------------------------------  347 (568)
                      .++.        +..-++|...|..|+|.|..                                                
T Consensus       363 erRV--------VARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~  434 (636)
T KOG2394|consen  363 ERRV--------VARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVT  434 (636)
T ss_pred             cceE--------EEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceE
Confidence            2433        34667899999999998310                                                


Q ss_pred             CEEEEEeCCCeEEEEEcCCCeee
Q 008363          348 GMVAYCSADGTVHRFQLTAKAVE  370 (568)
Q Consensus       348 ~~l~s~s~Dg~v~iwd~~~~~~~  370 (568)
                      -.|.+.+.|-.+.+||+....+.
T Consensus       435 YRfGSVGqDTqlcLWDlteD~L~  457 (636)
T KOG2394|consen  435 YRFGSVGQDTQLCLWDLTEDVLV  457 (636)
T ss_pred             EEeecccccceEEEEecchhhcc
Confidence            15778889999999999655443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.49  E-value=2e-12  Score=123.90  Aligned_cols=196  Identities=16%  Similarity=0.213  Sum_probs=146.8

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD  202 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D  202 (568)
                      ..|++|-.+|.+.+|....+.....            ..+.+          ..+ ..+ ..|.=++. .-.++|+|+..
T Consensus       116 g~Litc~~sG~l~~~~~k~~d~hss------------~l~~l----------a~g-~g~-~~~r~~~~-~p~Iva~GGke  170 (412)
T KOG3881|consen  116 GTLITCVSSGNLQVRHDKSGDLHSS------------KLIKL----------ATG-PGL-YDVRQTDT-DPYIVATGGKE  170 (412)
T ss_pred             CEEEEEecCCcEEEEeccCCccccc------------cceee----------ecC-Cce-eeeccCCC-CCceEecCchh
Confidence            5899999999999999986432100            00000          111 112 33332222 22477779988


Q ss_pred             --CeEEEEEccCCCCCCCCceeEEeeCCC-----------CCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCc
Q 008363          203 --GTVALWKFVASDSSIDSRPLLCFSADT-----------LPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFR  268 (568)
Q Consensus       203 --g~I~iwd~~~~~~~~~~~~~~~~~~h~-----------~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~  268 (568)
                        ..+.|||+...        .+.|.+..           -+++++.|-+..    ..+.||++..-+ |++||.+.+.+
T Consensus       171 ~~n~lkiwdle~~--------~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~----~~~~fat~T~~hqvR~YDt~~qRR  238 (412)
T KOG3881|consen  171 NINELKIWDLEQS--------KQIWSAKNVPNDRLGLRVPVWITDIRFLEGS----PNYKFATITRYHQVRLYDTRHQRR  238 (412)
T ss_pred             cccceeeeecccc--------eeeeeccCCCCccccceeeeeeccceecCCC----CCceEEEEecceeEEEecCcccCc
Confidence              88999999854        33333321           246788898873    237899999888 99999999989


Q ss_pred             ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCC
Q 008363          269 PLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG  348 (568)
Q Consensus       269 ~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~  348 (568)
                      |+..+.--..+|+++...|++++|++|..-|.+..||+|.        ++..       ...+.+..+.|+++..+|.++
T Consensus       239 PV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~--------~kl~-------g~~~kg~tGsirsih~hp~~~  303 (412)
T KOG3881|consen  239 PVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRG--------GKLL-------GCGLKGITGSIRSIHCHPTHP  303 (412)
T ss_pred             ceeEeccccCcceeeeecCCCcEEEEecccchhheecccC--------ceee-------ccccCCccCCcceEEEcCCCc
Confidence            9988887788899999999999999999999999999975        4333       235788899999999999999


Q ss_pred             EEEEEeCCCeEEEEEcCCCeee
Q 008363          349 MVAYCSADGTVHRFQLTAKAVE  370 (568)
Q Consensus       349 ~l~s~s~Dg~v~iwd~~~~~~~  370 (568)
                      +|++||.|..|+|+|+.+.++.
T Consensus       304 ~las~GLDRyvRIhD~ktrkll  325 (412)
T KOG3881|consen  304 VLASCGLDRYVRIHDIKTRKLL  325 (412)
T ss_pred             eEEeeccceeEEEeecccchhh
Confidence            9999999999999999875544

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.49  E-value=2.6e-13  Score=132.34  Aligned_cols=214  Identities=13%  Similarity=0.084  Sum_probs=162.7

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------ccCCCCceEEEeecceecc
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------KEGTDPRFVKLEPVFRCSM  172 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------~~~~~~~~v~~~~~~~~~~  172 (568)
                      .+.|+.+|          ..|+.|+.-|.|-.+|+.+++....+.....            ........+.+++..-...
T Consensus       134 ~~~ytrnG----------rhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtEl  203 (545)
T KOG1272|consen  134 HLDYTRNG----------RHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTEL  203 (545)
T ss_pred             eeeecCCc----------cEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEE
Confidence            78999999          7899999999999999999888776643322            2223333444443321000


Q ss_pred             cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363          173 LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILT  252 (568)
Q Consensus       173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las  252 (568)
                      +.......| ..++|-  |..-+|++++..|.++--|+..+      +.+..+..-.+.+..+.-+|..      .++-+
T Consensus       204 HClk~~~~v-~rLeFL--PyHfLL~~~~~~G~L~Y~DVS~G------klVa~~~t~~G~~~vm~qNP~N------aVih~  268 (545)
T KOG1272|consen  204 HCLKRHIRV-ARLEFL--PYHFLLVAASEAGFLKYQDVSTG------KLVASIRTGAGRTDVMKQNPYN------AVIHL  268 (545)
T ss_pred             eehhhcCch-hhhccc--chhheeeecccCCceEEEeechh------hhhHHHHccCCccchhhcCCcc------ceEEE
Confidence            001122345 778888  66778999999999999999987      7788887788889999999998      78889


Q ss_pred             EcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363          253 AGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV  331 (568)
Q Consensus       253 ~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~  331 (568)
                      |..+| |.+|..... .++..+..|.++|.+|++.++|+|++++|.|..|+|||+|++.               +. +++
T Consensus       269 GhsnGtVSlWSP~sk-ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~---------------ql-~t~  331 (545)
T KOG1272|consen  269 GHSNGTVSLWSPNSK-EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY---------------QL-HTY  331 (545)
T ss_pred             cCCCceEEecCCCCc-chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc---------------cc-cee
Confidence            98888 999999877 8888888999999999999999999999999999999998854               11 233


Q ss_pred             ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363          332 NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQ  363 (568)
Q Consensus       332 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd  363 (568)
                      .. ..+...++||..|  +++++....|.||.
T Consensus       332 ~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  332 RT-PHPASNLSLSQKG--LLALSYGDHVQIWK  360 (545)
T ss_pred             ec-CCCcccccccccc--ceeeecCCeeeeeh
Confidence            22 3456678887655  55666667899995

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.48  E-value=5.2e-12  Score=116.87  Aligned_cols=152  Identities=17%  Similarity=0.349  Sum_probs=106.9

Q ss_pred             eEEEEccCCCCCEEEEEeC----------CCeEEEEEccCCCCCCCCceeEEee-CCCCCeeEEEEccCCCCCCCCcEEE
Q 008363          183 LTMEWSTSPPHDYLLAGCH----------DGTVALWKFVASDSSIDSRPLLCFS-ADTLPIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~----------Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~~~~la  251 (568)
                      ..+.|+  +.|++|++-..          -|...||-++...     .+...+. ...++|.+++|+|++      +.||
T Consensus         9 ~~~~W~--~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~-----~~~~~i~l~~~~~I~~~~WsP~g------~~fa   75 (194)
T PF08662_consen    9 AKLHWQ--PSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN-----IPVESIELKKEGPIHDVAWSPNG------NEFA   75 (194)
T ss_pred             EEEEec--ccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC-----CccceeeccCCCceEEEEECcCC------CEEE
Confidence            578899  77877665433          2446677765431     2333332 235579999999998      5655


Q ss_pred             EE--cCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEccccccCCCCCCCCccCccc
Q 008363          252 TA--GHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD---DGAMRIVSLLKAAYDVPATGKPFAGTKQ  325 (568)
Q Consensus       252 s~--s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~---dg~I~lwd~~~~~~~~~~~g~~~~~~~~  325 (568)
                      ..  ..+. |.|||++ . ..+..+.  ...++.|.|+|+|++|++++.   .|.|.+||+++        .        
T Consensus        76 vi~g~~~~~v~lyd~~-~-~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~--------~--------  135 (194)
T PF08662_consen   76 VIYGSMPAKVTLYDVK-G-KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK--------K--------  135 (194)
T ss_pred             EEEccCCcccEEEcCc-c-cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC--------C--------
Confidence            44  3456 9999997 3 5666664  456789999999999999875   46799999964        2        


Q ss_pred             cceEEEecCCCCEEEEEEecCCCEEEEEeC------CCeEEEEEcCCCee
Q 008363          326 QGLHLVNCSSFAIWSVQVSRLTGMVAYCSA------DGTVHRFQLTAKAV  369 (568)
Q Consensus       326 ~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~------Dg~v~iwd~~~~~~  369 (568)
                      +.+..+. | ..++.++|+|+|++|++++.      |..++||++....+
T Consensus       136 ~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l  183 (194)
T PF08662_consen  136 KKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL  183 (194)
T ss_pred             EEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence            2223332 3 34789999999999999874      78999999965443

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.48  E-value=2e-12  Score=135.30  Aligned_cols=225  Identities=20%  Similarity=0.300  Sum_probs=155.6

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCce-eeEEeccCCccCCCCceEEEeecceecccc
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRT-MKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~-~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      ..|...++ .+.|..+..       . .-+++++.||.|..|+++.... ...+....              ...+... 
T Consensus       288 ~sh~~~v~-~vvW~~~~~-------~-~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~--------------~~~~~~~-  343 (555)
T KOG1587|consen  288 VSHSEPVT-AVVWLQNEH-------N-TEFFSLSSDGSICSWDTDMLSLPVEGLLLES--------------KKHKGQQ-  343 (555)
T ss_pred             ccCCcCeE-EEEEeccCC-------C-CceEEEecCCcEeeeeccccccchhhccccc--------------ccccccc-
Confidence            45777555 999988762       1 4588888899999998876332 11110000              0000000 


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCC--CCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSS--IDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILT  252 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~--~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las  252 (568)
                      ..-...+ ++++|.+.. -..+++|+.+|.|.-=+-......  ...+.+..+..|.++|+++.++|-+     +.+|.+
T Consensus       344 ~~~~~~~-t~~~F~~~~-p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~-----~k~fls  416 (555)
T KOG1587|consen  344 SSKAVGA-TSLKFEPTD-PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFY-----PKNFLS  416 (555)
T ss_pred             cccccce-eeEeeccCC-CceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCc-----cceeee
Confidence            0112233 889998763 368999999999877333222110  0113344677899999999999998     478888


Q ss_pred             EcCCCEEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363          253 AGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVIL-SFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV  331 (568)
Q Consensus       253 ~s~d~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s-~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~  331 (568)
                      +++.+|+||.......|+..+..+...|++++|||....+++ +..||.|.+||+....      -        .++...
T Consensus       417 ~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~------~--------~Pv~s~  482 (555)
T KOG1587|consen  417 VGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD------E--------EPVLSQ  482 (555)
T ss_pred             eccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc------c--------CCcccc
Confidence            885569999988455888888888888999999998765555 4559999999996522      2        223344


Q ss_pred             ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          332 NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       332 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      ..+....+.+.|++.|++|+.|...|.+.+|++.
T Consensus       483 ~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  483 KVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             cccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            4456677888999999999999999999999994

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.48  E-value=8.1e-12  Score=119.06  Aligned_cols=183  Identities=19%  Similarity=0.225  Sum_probs=137.2

Q ss_pred             EEEEEeCCC--cEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeC
Q 008363          124 YLAVLLGNG--SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH  201 (568)
Q Consensus       124 ~las~s~dg--~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~  201 (568)
                      ++|..+.+.  .+++.++.....+..+                           .....| .+|..+    -++|+++-.
T Consensus        58 LvaiV~~~qpr~Lkv~~~Kk~~~ICe~---------------------------~fpt~I-L~VrmN----r~RLvV~Le  105 (391)
T KOG2110|consen   58 LVAIVSIKQPRKLKVVHFKKKTTICEI---------------------------FFPTSI-LAVRMN----RKRLVVCLE  105 (391)
T ss_pred             eeEEEecCCCceEEEEEcccCceEEEE---------------------------ecCCce-EEEEEc----cceEEEEEc
Confidence            455555443  4888888876655443                           234566 888877    346666665


Q ss_pred             CCeEEEEEccCCCCCCCCceeEEee---CCCCCeeEEEEccCCCCCCCCcEEEEE-cCC-C-EEEEECCCCCcceeeeCC
Q 008363          202 DGTVALWKFVASDSSIDSRPLLCFS---ADTLPIRAVSWAPAESDSDSANVILTA-GHG-G-LKFWDIRDPFRPLWDIHP  275 (568)
Q Consensus       202 Dg~I~iwd~~~~~~~~~~~~~~~~~---~h~~~V~~v~~~p~~~~~~~~~~las~-s~d-~-v~lwD~~~~~~~~~~~~~  275 (568)
                      + .|.|||++..      ++++++.   .|...+.++++++.+      .++|-= +.+ | |.|||+.+- +++..+..
T Consensus       106 e-~IyIydI~~M------klLhTI~t~~~n~~gl~AlS~n~~n------~ylAyp~s~t~GdV~l~d~~nl-~~v~~I~a  171 (391)
T KOG2110|consen  106 E-SIYIYDIKDM------KLLHTIETTPPNPKGLCALSPNNAN------CYLAYPGSTTSGDVVLFDTINL-QPVNTINA  171 (391)
T ss_pred             c-cEEEEecccc------eeehhhhccCCCccceEeeccCCCC------ceEEecCCCCCceEEEEEcccc-eeeeEEEe
Confidence            4 4999999976      6666553   345557777777666      577654 333 5 999999987 89999999


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCc-EEEEEccccccCCCCCCCCccCccccceEEEecC--CCCEEEEEEecCCCEEEE
Q 008363          276 APKFIYGLDWLPDPGCVILSFDDGA-MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS--SFAIWSVQVSRLTGMVAY  352 (568)
Q Consensus       276 h~~~i~~l~~sp~~~~l~s~~~dg~-I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h--~~~V~~l~~sp~~~~l~s  352 (568)
                      |.+.+.+++|+|+|.+|+++++.|+ ||||.+.        .|+.+        ..|+..  ...|.+++|+|++.+|++
T Consensus       172 H~~~lAalafs~~G~llATASeKGTVIRVf~v~--------~G~kl--------~eFRRG~~~~~IySL~Fs~ds~~L~~  235 (391)
T KOG2110|consen  172 HKGPLAALAFSPDGTLLATASEKGTVIRVFSVP--------EGQKL--------YEFRRGTYPVSIYSLSFSPDSQFLAA  235 (391)
T ss_pred             cCCceeEEEECCCCCEEEEeccCceEEEEEEcC--------CccEe--------eeeeCCceeeEEEEEEECCCCCeEEE
Confidence            9999999999999999999999887 6999994        36443        455432  246889999999999999


Q ss_pred             EeCCCeEEEEEcCCCe
Q 008363          353 CSADGTVHRFQLTAKA  368 (568)
Q Consensus       353 ~s~Dg~v~iwd~~~~~  368 (568)
                      .|..++|+||.++...
T Consensus       236 sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  236 SSNTETVHIFKLEKVS  251 (391)
T ss_pred             ecCCCeEEEEEecccc
Confidence            9999999999997654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=2.3e-11  Score=109.68  Aligned_cols=214  Identities=17%  Similarity=0.165  Sum_probs=141.8

Q ss_pred             CcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeec
Q 008363           88 ALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPV  167 (568)
Q Consensus        88 ~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~  167 (568)
                      ..-.++...+|++ .++.++|..            .+|++|+ ||.|+=|.........-             .-++|..
T Consensus        51 gk~~iv~eqahdg-piy~~~f~d------------~~Lls~g-dG~V~gw~W~E~~es~~-------------~K~lwe~  103 (325)
T KOG0649|consen   51 GKLKIVPEQAHDG-PIYYLAFHD------------DFLLSGG-DGLVYGWEWNEEEESLA-------------TKRLWEV  103 (325)
T ss_pred             CCcceeeccccCC-Ceeeeeeeh------------hheeecc-CceEEEeeehhhhhhcc-------------chhhhhh
Confidence            3445666789999 677999983            3677765 49999998876322100             0012222


Q ss_pred             ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363          168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA  247 (568)
Q Consensus       168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~  247 (568)
                      ......-.-....| .++-..  |..+-|+.++.|+.+.-||++++      +..+++++|+..|.+++--...      
T Consensus       104 ~~P~~~~~~evPeI-Nam~ld--P~enSi~~AgGD~~~y~~dlE~G------~i~r~~rGHtDYvH~vv~R~~~------  168 (325)
T KOG0649|consen  104 KIPMQVDAVEVPEI-NAMWLD--PSENSILFAGGDGVIYQVDLEDG------RIQREYRGHTDYVHSVVGRNAN------  168 (325)
T ss_pred             cCccccCcccCCcc-ceeEec--cCCCcEEEecCCeEEEEEEecCC------EEEEEEcCCcceeeeeeecccC------
Confidence            11111101112334 555544  44455666667999999999987      8999999999999999974444      


Q ss_pred             cEEEEEcCCC-EEEEECCCCCcceeeeC---------CC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCC
Q 008363          248 NVILTAGHGG-LKFWDIRDPFRPLWDIH---------PA-PKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPAT  316 (568)
Q Consensus       248 ~~las~s~d~-v~lwD~~~~~~~~~~~~---------~h-~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~  316 (568)
                      ..+.||++|| +|+||+++. +++..+.         .| ...|.+++-+  ..+|++|+. -.+.+|++|...      
T Consensus       169 ~qilsG~EDGtvRvWd~kt~-k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGgG-p~lslwhLrsse------  238 (325)
T KOG0649|consen  169 GQILSGAEDGTVRVWDTKTQ-KHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGGG-PKLSLWHLRSSE------  238 (325)
T ss_pred             cceeecCCCccEEEEecccc-ceeEEeccccChhhcCcccCceeEEEecc--CceEEecCC-CceeEEeccCCC------
Confidence            4788999999 999999988 6665543         22 2346666655  557777654 568899997632      


Q ss_pred             CCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          317 GKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       317 g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                        +      .++..   -.+.|..+.|.  ...+++++....|.-|.+..
T Consensus       239 --~------t~vfp---ipa~v~~v~F~--~d~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  239 --S------TCVFP---IPARVHLVDFV--DDCVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             --c------eEEEe---cccceeEeeee--cceEEEeccccceeeeeecc
Confidence              2      12223   34556777774  56788888888999999854

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=6e-12  Score=131.92  Aligned_cols=195  Identities=17%  Similarity=0.148  Sum_probs=129.3

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCC---CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecc
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGN---GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSM  172 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~d---g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~  172 (568)
                      ..|.. .+...+|+|++          +.|+.++.+   ..|++||+.+++..... .                      
T Consensus       200 t~~~~-~v~~p~wSPDG----------~~la~~s~~~~~~~i~i~dl~tg~~~~l~-~----------------------  245 (429)
T PRK01742        200 NRSSQ-PLMSPAWSPDG----------SKLAYVSFENKKSQLVVHDLRSGARKVVA-S----------------------  245 (429)
T ss_pred             ccCCC-ccccceEcCCC----------CEEEEEEecCCCcEEEEEeCCCCceEEEe-c----------------------
Confidence            45555 45599999999          788877654   36999999886532110 0                      


Q ss_pred             cccCCcCccceEEEEccCCCCCEEEEEe-CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363          173 LKCGGTQSIPLTMEWSTSPPHDYLLAGC-HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la  251 (568)
                       ..+|   . ..++|+  |+|+.|+.++ .+|.+.||.+...     ......+..|...+....|+|++      ..|+
T Consensus       246 -~~g~---~-~~~~wS--PDG~~La~~~~~~g~~~Iy~~d~~-----~~~~~~lt~~~~~~~~~~wSpDG------~~i~  307 (429)
T PRK01742        246 -FRGH---N-GAPAFS--PDGSRLAFASSKDGVLNIYVMGAN-----GGTPSQLTSGAGNNTEPSWSPDG------QSIL  307 (429)
T ss_pred             -CCCc---c-CceeEC--CCCCEEEEEEecCCcEEEEEEECC-----CCCeEeeccCCCCcCCEEECCCC------CEEE
Confidence             0222   2 467999  8999888765 6887777654321     12234455677778899999999      6665


Q ss_pred             EEc-CCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363          252 TAG-HGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH  329 (568)
Q Consensus       252 s~s-~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~  329 (568)
                      .++ .++ ..||++.........+ .+..  ..+.|+|+|++|+.++.++ +.+||+..        |+..         
T Consensus       308 f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~--------g~~~---------  366 (429)
T PRK01742        308 FTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTS--------GSTE---------  366 (429)
T ss_pred             EEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCC--------CCeE---------
Confidence            554 456 8888765432222223 3333  4678999999999887765 55699843        4321         


Q ss_pred             EEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          330 LVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       330 ~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                      .+..+ .....+.|+|+|++|++++.+|.+.+|++
T Consensus       367 ~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        367 VLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             EecCC-CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence            11111 12356789999999999999999988886

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=5.7e-12  Score=119.57  Aligned_cols=199  Identities=15%  Similarity=0.233  Sum_probs=137.5

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      .+.-++|++.-          ..+|++..|-.|++|+-.. .+...+.                         ......|
T Consensus       100 dlr~~aWhqH~----------~~fava~nddvVriy~kss-t~pt~Lk-------------------------s~sQrnv  143 (445)
T KOG2139|consen  100 DLRGVAWHQHI----------IAFAVATNDDVVRIYDKSS-TCPTKLK-------------------------SVSQRNV  143 (445)
T ss_pred             ceeeEeechhh----------hhhhhhccCcEEEEeccCC-CCCceec-------------------------chhhcce
Confidence            45578999976          6899999999999999876 4433331                         1223456


Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCC--------CceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSID--------SRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA  253 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~--------~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~  253 (568)
                       +|++|-|... ..|+.|+.. -|.||..........        ...+....+| .+|+++.|+++|      ..++++
T Consensus       144 -tclawRPlsa-selavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg------t~l~tA  213 (445)
T KOG2139|consen  144 -TCLAWRPLSA-SELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG------TILVTA  213 (445)
T ss_pred             -eEEEeccCCc-ceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCC------CEEeec
Confidence             9999996633 478888865 489998764322100        0112233455 679999999999      899999


Q ss_pred             cCCC--EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363          254 GHGG--LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV  331 (568)
Q Consensus       254 s~d~--v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~  331 (568)
                      +.+.  |.|||..++ ..+....--.+.++-+.||||+.+|+++.-|+..++|......     +.           ...
T Consensus       214 S~gsssi~iWdpdtg-~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~w-----t~-----------erw  276 (445)
T KOG2139|consen  214 SFGSSSIMIWDPDTG-QKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSW-----TK-----------ERW  276 (445)
T ss_pred             ccCcceEEEEcCCCC-CcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccc-----ee-----------cce
Confidence            8874  999999987 3332222335678899999999999999999999999763311     00           112


Q ss_pred             ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          332 NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       332 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                      ....+.|...+|+|+|++|+.++. |.-++|.+
T Consensus       277 ~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl  308 (445)
T KOG2139|consen  277 ILGSGRVQTACWSPCGSFLLFACS-GSPRLYSL  308 (445)
T ss_pred             eccCCceeeeeecCCCCEEEEEEc-CCceEEEE
Confidence            223458999999999976655542 33445555

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=1.5e-12  Score=124.25  Aligned_cols=173  Identities=13%  Similarity=0.166  Sum_probs=138.0

Q ss_pred             ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC-CCCCeeEEEEccCCCCCCCCc
Q 008363          170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA-DTLPIRAVSWAPAESDSDSAN  248 (568)
Q Consensus       170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~~~~~  248 (568)
                      |.+.+.+|++.| .++.|+  .++++|++|+.|..+++|.+.........+++..... |.+.|.|++|....      .
T Consensus        48 ~qKD~~~H~GCi-NAlqFS--~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N------~  118 (609)
T KOG4227|consen   48 CQKDVREHTGCI-NALQFS--HNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN------R  118 (609)
T ss_pred             hhhhhhhhcccc-ceeeec--cCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC------e
Confidence            555668999999 999999  8899999999999999999875433333466665543 55889999999987      8


Q ss_pred             EEEEEcCCC-EEEEECCCCCcceeeeC--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccc
Q 008363          249 VILTAGHGG-LKFWDIRDPFRPLWDIH--PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQ  325 (568)
Q Consensus       249 ~las~s~d~-v~lwD~~~~~~~~~~~~--~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~  325 (568)
                      ++.+|+.++ |.+.|+.+. ..+..+.  ...+.|+.+..+|..+.|++.+.++.|.+||.|...    ..+.++     
T Consensus       119 ~~~SG~~~~~VI~HDiEt~-qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~----~~~~~~-----  188 (609)
T KOG4227|consen  119 FLYSGERWGTVIKHDIETK-QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ----NPISLV-----  188 (609)
T ss_pred             eEecCCCcceeEeeecccc-eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC----CCCcee-----
Confidence            999999998 999999987 5555543  234589999999999999999999999999998643    223332     


Q ss_pred             cceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcC
Q 008363          326 QGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       326 ~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~  365 (568)
                          .+........++.|+|.. .+|++.+.-+-+-+||..
T Consensus       189 ----~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R  225 (609)
T KOG4227|consen  189 ----LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRR  225 (609)
T ss_pred             ----eecCCCccceeeeecCCCceeEEeccccCCCCceeec
Confidence                333344567889999986 788999999999999985

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.43  E-value=2.7e-12  Score=120.00  Aligned_cols=171  Identities=16%  Similarity=0.237  Sum_probs=139.1

Q ss_pred             cCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC
Q 008363          178 TQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG  257 (568)
Q Consensus       178 ~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~  257 (568)
                      ..+| +|.+|+  +++..+|++.....|.||.......   .++.+++..|...|+.|.|+|..      +.|++|+.|.
T Consensus        10 ~~pi-tchAwn--~drt~iAv~~~~~evhiy~~~~~~~---w~~~htls~Hd~~vtgvdWap~s------nrIvtcs~dr   77 (361)
T KOG1523|consen   10 LEPI-TCHAWN--SDRTQIAVSPNNHEVHIYSMLGADL---WEPAHTLSEHDKIVTGVDWAPKS------NRIVTCSHDR   77 (361)
T ss_pred             cCce-eeeeec--CCCceEEeccCCceEEEEEecCCCC---ceeceehhhhCcceeEEeecCCC------CceeEccCCC
Confidence            4567 999999  8999999999999999999887641   37888999999999999999998      8999999998


Q ss_pred             -EEEEECCCCC--cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363          258 -LKFWDIRDPF--RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS  334 (568)
Q Consensus       258 -v~lwD~~~~~--~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h  334 (568)
                       -++|....+.  .+...+..+....+++.|+|.++.+++|+.-..|.||=+..-. +      .     ...-+.-..+
T Consensus        78 nayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN-d------W-----WVsKhikkPi  145 (361)
T KOG1523|consen   78 NAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN-D------W-----WVSKHIKKPI  145 (361)
T ss_pred             CccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc-c------e-----ehhhhhCCcc
Confidence             9999985443  5566667788999999999999999999999999998773211 0      0     0011233456


Q ss_pred             CCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          335 SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       335 ~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                      ...|+++.|+|++-+|++||.|+.++||..--..++..
T Consensus       146 rStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdek  183 (361)
T KOG1523|consen  146 RSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEK  183 (361)
T ss_pred             ccceeeeeccCCcceecccccCcceeEEEEeeeccccC
Confidence            78899999999999999999999999998754444433

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.43  E-value=1.2e-12  Score=119.20  Aligned_cols=156  Identities=16%  Similarity=0.261  Sum_probs=120.8

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD  202 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D  202 (568)
                      -+|++|-.+|.|.+||+.++..+..+...             |++   ......|..+| ++++|.  +.-+.=++|+.+
T Consensus       166 ~lllaGyEsghvv~wd~S~~~~~~~~~~~-------------~kv---~~~~ash~qpv-lsldya--s~~~rGisgga~  226 (323)
T KOG0322|consen  166 FLLLAGYESGHVVIWDLSTGDKIIQLPQS-------------SKV---ESPNASHKQPV-LSLDYA--SSCDRGISGGAD  226 (323)
T ss_pred             EEEEEeccCCeEEEEEccCCceeeccccc-------------ccc---ccchhhccCcc-eeeeec--hhhcCCcCCCcc
Confidence            47788889999999999997544333111             111   11226789999 999988  444456788888


Q ss_pred             CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeE
Q 008363          203 GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIY  281 (568)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~  281 (568)
                      -.+..|++......-....  .+.-..-.|..+.+-|++      +++||++.|+ ||+|..++. .++..+.-|.+.|+
T Consensus       227 dkl~~~Sl~~s~gslq~~~--e~~lknpGv~gvrIRpD~------KIlATAGWD~RiRVyswrtl-~pLAVLkyHsagvn  297 (323)
T KOG0322|consen  227 DKLVMYSLNHSTGSLQIRK--EITLKNPGVSGVRIRPDG------KILATAGWDHRIRVYSWRTL-NPLAVLKYHSAGVN  297 (323)
T ss_pred             ccceeeeeccccCcccccc--eEEecCCCccceEEccCC------cEEeecccCCcEEEEEeccC-Cchhhhhhhhccee
Confidence            8999999875522111122  222234568999999999      9999999999 999999988 99999999999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEc
Q 008363          282 GLDWLPDPGCVILSFDDGAMRIVSL  306 (568)
Q Consensus       282 ~l~~sp~~~~l~s~~~dg~I~lwd~  306 (568)
                      +++|+|+...+++++.|++|-+|++
T Consensus       298 ~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  298 AVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEEeCCCCchhhhccCCceEEeeec
Confidence            9999999999999999999999987

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=2.2e-12  Score=124.98  Aligned_cols=163  Identities=16%  Similarity=0.236  Sum_probs=121.6

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWD  262 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD  262 (568)
                      .+++|+  .+|..|++|+.||++|||++...      ..+.....|.+.|.++.|+|++      .+|++.+.|..+||+
T Consensus       148 k~vaf~--~~gs~latgg~dg~lRv~~~Ps~------~t~l~e~~~~~eV~DL~FS~dg------k~lasig~d~~~VW~  213 (398)
T KOG0771|consen  148 KVVAFN--GDGSKLATGGTDGTLRVWEWPSM------LTILEEIAHHAEVKDLDFSPDG------KFLASIGADSARVWS  213 (398)
T ss_pred             eEEEEc--CCCCEeeeccccceEEEEecCcc------hhhhhhHhhcCccccceeCCCC------cEEEEecCCceEEEE
Confidence            568888  88999999999999999997755      6667778899999999999999      899999999999999


Q ss_pred             CCCCCcceeeeCC--CCCCeEEEEEcCCC---CEEEEE--eCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCC
Q 008363          263 IRDPFRPLWDIHP--APKFIYGLDWLPDP---GCVILS--FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS  335 (568)
Q Consensus       263 ~~~~~~~~~~~~~--h~~~i~~l~~sp~~---~~l~s~--~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~  335 (568)
                      ++++ .++.....  -......+.|+.|+   .+++.+  ..-+.|++||+....-     +..+      .......-.
T Consensus       214 ~~~g-~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~-----~~~l------~~~~~~~~~  281 (398)
T KOG0771|consen  214 VNTG-AALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSG-----SNFL------RLRKKIKRF  281 (398)
T ss_pred             eccC-chhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecc-----cccc------chhhhhhcc
Confidence            9988 55544432  22335678888777   333333  4467788888754331     1111      111222223


Q ss_pred             CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          336 FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       336 ~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                      ..|.+++++++|++++.|+.||.|-|++..+.+..+
T Consensus       282 ~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~  317 (398)
T KOG0771|consen  282 KSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQ  317 (398)
T ss_pred             CcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeE
Confidence            478999999999999999999999999997654443

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=2.8e-11  Score=127.12  Aligned_cols=205  Identities=11%  Similarity=0.116  Sum_probs=148.8

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      .-..-.|++++          ++|+.+. +..|.||...++.|+..+                          .+|..++
T Consensus        18 ~~~~avfSnD~----------k~l~~~~-~~~V~VyS~~Tg~~i~~l--------------------------~~~~a~l   60 (792)
T KOG1963|consen   18 NKSPAVFSNDA----------KFLFLCT-GNFVKVYSTATGECITSL--------------------------EDHTAPL   60 (792)
T ss_pred             eecccccccCC----------cEEEEee-CCEEEEEecchHhhhhhc--------------------------ccccCcc
Confidence            44466789998          5666554 578999999999999776                          8899998


Q ss_pred             ceEEEEccCCCC-CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCC------------------------------
Q 008363          182 PLTMEWSTSPPH-DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTL------------------------------  230 (568)
Q Consensus       182 ~~~v~~s~~~~g-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~------------------------------  230 (568)
                       +.+...|.+.. .++.+++.||+|++||...+.      .+.++..+..                              
T Consensus        61 -~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~------Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~  133 (792)
T KOG1963|consen   61 -TSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE------LLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTF  133 (792)
T ss_pred             -ceeeecCCCccceEEEEEecCccEEEecCCCcE------EEEEEecCCceeEEEechhHhCccceeEeecccceeeeec
Confidence             99998876554 577899999999999998663      2222221100                              


Q ss_pred             ----------------------------CeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcce--ee-eCCCCCC
Q 008363          231 ----------------------------PIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPL--WD-IHPAPKF  279 (568)
Q Consensus       231 ----------------------------~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~--~~-~~~h~~~  279 (568)
                                                  .-.+|.+++.+      .+.+.....++.+|+.....+..  +. -..|.-.
T Consensus       134 s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~g------e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~  207 (792)
T KOG1963|consen  134 SKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSG------EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFN  207 (792)
T ss_pred             ccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCc------eEEEEEEeeeEEEEEecccceeeccchhhhhhccc
Confidence                                        01234444444      55555555568888887643111  11 1245666


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeE
Q 008363          280 IYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTV  359 (568)
Q Consensus       280 i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v  359 (568)
                      +++.++||.+++++++..||.|.+|.--..+      +..      ...+.+..|...|.+++|+++|.+|++||..|.+
T Consensus       208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~------~~~------~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VL  275 (792)
T KOG1963|consen  208 ITCVALSPNERYLAAGDSDGRILVWRDFGSS------DDS------ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVL  275 (792)
T ss_pred             ceeEEeccccceEEEeccCCcEEEEeccccc------ccc------ccceEEEecccccceeEEecCCceEeecccceEE
Confidence            8999999999999999999999999542211      111      2235788899999999999999999999999999


Q ss_pred             EEEEcCCCe
Q 008363          360 HRFQLTAKA  368 (568)
Q Consensus       360 ~iwd~~~~~  368 (568)
                      .+|.+.+++
T Consensus       276 v~Wq~~T~~  284 (792)
T KOG1963|consen  276 VLWQLETGK  284 (792)
T ss_pred             EEEeecCCC
Confidence            999998877

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=2.2e-11  Score=127.69  Aligned_cols=204  Identities=15%  Similarity=0.163  Sum_probs=135.1

Q ss_pred             CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC---CeEEE
Q 008363          131 NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD---GTVAL  207 (568)
Q Consensus       131 dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D---g~I~i  207 (568)
                      +..|.|||..... .+.+                          ..|...+ .++.|+  |+|+.|+.++.+   ..|.+
T Consensus       183 ~~~i~i~d~dg~~-~~~l--------------------------t~~~~~v-~~p~wS--PDG~~la~~s~~~~~~~i~i  232 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIV--------------------------NRSSQPL-MSPAWS--PDGSKLAYVSFENKKSQLVV  232 (429)
T ss_pred             eEEEEEECCCCCC-ceEe--------------------------ccCCCcc-ccceEc--CCCCEEEEEEecCCCcEEEE
Confidence            4689999987643 3333                          5566677 899999  899999887754   36999


Q ss_pred             EEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc-CCC-EE--EEECCCCCcceeeeCCCCCCeEEE
Q 008363          208 WKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG-HGG-LK--FWDIRDPFRPLWDIHPAPKFIYGL  283 (568)
Q Consensus       208 wd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s-~d~-v~--lwD~~~~~~~~~~~~~h~~~i~~l  283 (568)
                      ||+.++..    ..+..+.+|   ...++|+|++      +.|+.++ .++ +.  +||+.++  ....+..+...+..+
T Consensus       233 ~dl~tg~~----~~l~~~~g~---~~~~~wSPDG------~~La~~~~~~g~~~Iy~~d~~~~--~~~~lt~~~~~~~~~  297 (429)
T PRK01742        233 HDLRSGAR----KVVASFRGH---NGAPAFSPDG------SRLAFASSKDGVLNIYVMGANGG--TPSQLTSGAGNNTEP  297 (429)
T ss_pred             EeCCCCce----EEEecCCCc---cCceeECCCC------CEEEEEEecCCcEEEEEEECCCC--CeEeeccCCCCcCCE
Confidence            99986621    334444444   3468999999      6776654 455 55  4566544  344555666778899


Q ss_pred             EEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 008363          284 DWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRF  362 (568)
Q Consensus       284 ~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iw  362 (568)
                      .|+|||+.|+.++ .+|...||++...       +...        ..+ .+..  ..+.|+|+|++|+.++.++ +.+|
T Consensus       298 ~wSpDG~~i~f~s~~~g~~~I~~~~~~-------~~~~--------~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~  358 (429)
T PRK01742        298 SWSPDGQSILFTSDRSGSPQVYRMSAS-------GGGA--------SLV-GGRG--YSAQISADGKTLVMINGDN-VVKQ  358 (429)
T ss_pred             EECCCCCEEEEEECCCCCceEEEEECC-------CCCe--------EEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEE
Confidence            9999999888765 4788899987431       1111        122 3333  4578999999998888765 5569


Q ss_pred             EcCCCeeeccCCCCCcceeeeecccCCCCceEEcccCCC
Q 008363          363 QLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDN  401 (568)
Q Consensus       363 d~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~  401 (568)
                      |+.++.........   .....++++++..|+..+....
T Consensus       359 Dl~~g~~~~lt~~~---~~~~~~~sPdG~~i~~~s~~g~  394 (429)
T PRK01742        359 DLTSGSTEVLSSTF---LDESPSISPNGIMIIYSSTQGL  394 (429)
T ss_pred             ECCCCCeEEecCCC---CCCCceECCCCCEEEEEEcCCC
Confidence            99887654321111   1123357888888877665433

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.41  E-value=3.3e-10  Score=106.21  Aligned_cols=225  Identities=17%  Similarity=0.252  Sum_probs=145.4

Q ss_pred             CcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC-CceeeEEeccCCccCCCCceEEEee
Q 008363           88 ALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEP  166 (568)
Q Consensus        88 ~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~  166 (568)
                      ...+.+..+.... .|.+|++.++.            |++.. .+.|.||.+.+ .+.++.+..                
T Consensus        83 ~k~~~i~el~f~~-~I~~V~l~r~r------------iVvvl-~~~I~VytF~~n~k~l~~~et----------------  132 (346)
T KOG2111|consen   83 LKERCIIELSFNS-EIKAVKLRRDR------------IVVVL-ENKIYVYTFPDNPKLLHVIET----------------  132 (346)
T ss_pred             ccCcEEEEEEecc-ceeeEEEcCCe------------EEEEe-cCeEEEEEcCCChhheeeeec----------------
Confidence            3444444555566 34488887764            44443 57899999984 555544311                


Q ss_pred             cceecccccCCcCccceEEEEccCCCCCEEEE-EeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCC
Q 008363          167 VFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLA-GCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSD  245 (568)
Q Consensus       167 ~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~s-gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~  245 (568)
                              ......+ .++.  |+.+..+||. |-.-|.|.|-|+.....    .+-..+.+|.+.|.|++.+-+|    
T Consensus       133 --------~~NPkGl-C~~~--~~~~k~~LafPg~k~GqvQi~dL~~~~~----~~p~~I~AH~s~Iacv~Ln~~G----  193 (346)
T KOG2111|consen  133 --------RSNPKGL-CSLC--PTSNKSLLAFPGFKTGQVQIVDLASTKP----NAPSIINAHDSDIACVALNLQG----  193 (346)
T ss_pred             --------ccCCCce-Eeec--CCCCceEEEcCCCccceEEEEEhhhcCc----CCceEEEcccCceeEEEEcCCc----
Confidence                    1111112 3333  4444344444 44569999999986622    2456788999999999999999    


Q ss_pred             CCcEEEEEcCCC--EEEEECCCCCcceeeeC--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCC-CCCCCc
Q 008363          246 SANVILTAGHGG--LKFWDIRDPFRPLWDIH--PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVP-ATGKPF  320 (568)
Q Consensus       246 ~~~~las~s~d~--v~lwD~~~~~~~~~~~~--~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~-~~g~~~  320 (568)
                        .++||+|..|  |||||..++ ..+..++  .....|++|+|||+..+|+++++.|+|+||.++....... ......
T Consensus       194 --t~vATaStkGTLIRIFdt~~g-~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~  270 (346)
T KOG2111|consen  194 --TLVATASTKGTLIRIFDTEDG-TLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSF  270 (346)
T ss_pred             --cEEEEeccCcEEEEEEEcCCC-cEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccc
Confidence              8999999986  999999998 6665554  2345689999999999999999999999999976431110 000000


Q ss_pred             cC-------ccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          321 AG-------TKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       321 ~~-------~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                      ..       .....+..+.-..+...-++|..+...++..+.||..+-+.+
T Consensus       271 ~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f  321 (346)
T KOG2111|consen  271 KRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKF  321 (346)
T ss_pred             cccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEe
Confidence            00       001122333444556666778777666777777887665555

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.40  E-value=2.8e-11  Score=112.02  Aligned_cols=109  Identities=26%  Similarity=0.578  Sum_probs=85.3

Q ss_pred             CcCccceEEEEccCCCCCEEEE--EeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363          177 GTQSIPLTMEWSTSPPHDYLLA--GCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG  254 (568)
Q Consensus       177 h~~~V~~~v~~s~~~~g~~l~s--gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s  254 (568)
                      ..+.| .+++|+  |+|+.||+  |..++.|.+||++ .      ..+..+.  ...+..|.|+|+|      ++|+.++
T Consensus        58 ~~~~I-~~~~Ws--P~g~~favi~g~~~~~v~lyd~~-~------~~i~~~~--~~~~n~i~wsP~G------~~l~~~g  119 (194)
T PF08662_consen   58 KEGPI-HDVAWS--PNGNEFAVIYGSMPAKVTLYDVK-G------KKIFSFG--TQPRNTISWSPDG------RFLVLAG  119 (194)
T ss_pred             CCCce-EEEEEC--cCCCEEEEEEccCCcccEEEcCc-c------cEeEeec--CCCceEEEECCCC------CEEEEEE
Confidence            34458 999999  77887654  4467899999996 2      5666663  5678899999999      8998886


Q ss_pred             CC---C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEEc
Q 008363          255 HG---G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD------DGAMRIVSL  306 (568)
Q Consensus       255 ~d---~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~------dg~I~lwd~  306 (568)
                      .+   | |.+||+++. ..+.... | ..++.++|+|||++|++++.      |+.++||+.
T Consensus       120 ~~n~~G~l~~wd~~~~-~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~  178 (194)
T PF08662_consen  120 FGNLNGDLEFWDVRKK-KKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF  178 (194)
T ss_pred             ccCCCcEEEEEECCCC-EEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe
Confidence            43   6 999999965 6665553 3 34789999999999999854      888999998

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.40  E-value=1.1e-11  Score=121.88  Aligned_cols=252  Identities=14%  Similarity=0.147  Sum_probs=172.5

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEec-cCC----------------ccCC
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYL-SSM----------------KEGT  157 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~-~~~----------------~~~~  157 (568)
                      +-.|.| ||..|.|+..|          ..|++|+.|..|.+||+..+.....+.+ |..                +..+
T Consensus       138 L~~H~G-cVntV~FN~~G----------d~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s  206 (559)
T KOG1334|consen  138 LNKHKG-CVNTVHFNQRG----------DVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS  206 (559)
T ss_pred             ccCCCC-ccceeeecccC----------ceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecc
Confidence            446888 77799999999          7999999999999999988665544322 221                3445


Q ss_pred             CCceEEEeecce---e--cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCC--
Q 008363          158 DPRFVKLEPVFR---C--SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTL--  230 (568)
Q Consensus       158 ~~~~v~~~~~~~---~--~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~--  230 (568)
                      .++.+++-.+..   +  ...+..|.+.| .-++--|... ..|.+++.|+.+.-+|++.....   ..+.+-..+..  
T Consensus       207 ~dgqvr~s~i~~t~~~e~t~rl~~h~g~v-hklav~p~sp-~~f~S~geD~~v~~~Dlr~~~pa---~~~~cr~~~~~~~  281 (559)
T KOG1334|consen  207 RDGQVRVSEILETGYVENTKRLAPHEGPV-HKLAVEPDSP-KPFLSCGEDAVVFHIDLRQDVPA---EKFVCREADEKER  281 (559)
T ss_pred             ccCceeeeeeccccceecceecccccCcc-ceeeecCCCC-CcccccccccceeeeeeccCCcc---ceeeeeccCCccc
Confidence            555555544433   1  22345677887 7777665433 47899999999999999877431   12223334444  


Q ss_pred             -CeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCc-----ceeeeC------CCCCCeEEEEEcCCCCEEEEEeC
Q 008363          231 -PIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFR-----PLWDIH------PAPKFIYGLDWLPDPGCVILSFD  297 (568)
Q Consensus       231 -~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~-----~~~~~~------~h~~~i~~l~~sp~~~~l~s~~~  297 (568)
                       ..++|+.+|..     ++.||+++.|. +++||.+.-..     ++..+.      ...-.|++++|+.++.-|+++..
T Consensus       282 v~L~~Ia~~P~n-----t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn  356 (559)
T KOG1334|consen  282 VGLYTIAVDPRN-----TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN  356 (559)
T ss_pred             eeeeeEecCCCC-----ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence             57889999987     47999999998 99999986421     122222      22345899999999999999999


Q ss_pred             CCcEEEEEccccccC-CCCCCCCccCccccceE-EEecCCC--CEEEEE-EecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          298 DGAMRIVSLLKAAYD-VPATGKPFAGTKQQGLH-LVNCSSF--AIWSVQ-VSRLTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       298 dg~I~lwd~~~~~~~-~~~~g~~~~~~~~~~l~-~~~~h~~--~V~~l~-~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                      |-.|+||.- ..... .|.+-.+.    .+.+. .++||..  .|-++- |.|...|+++||.-|.|.||+-.++.+.+-
T Consensus       357 De~IYLF~~-~~~~G~~p~~~s~~----~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~  431 (559)
T KOG1334|consen  357 DEDIYLFNK-SMGDGSEPDPSSPR----EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRF  431 (559)
T ss_pred             ccceEEecc-ccccCCCCCCCcch----hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHH
Confidence            999999943 22211 11111110    01122 4888874  355654 457789999999999999999988876554

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.38  E-value=6.6e-12  Score=124.76  Aligned_cols=152  Identities=19%  Similarity=0.300  Sum_probs=111.3

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC--c---eeeEEec------cCCccCCCCceEEEeeccee
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL--R---TMKAIYL------SSMKEGTDPRFVKLEPVFRC  170 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~--~---~~~~l~~------~~~~~~~~~~~v~~~~~~~~  170 (568)
                      .+.+++|-|.++         .+++++-.+|.+.+||..-.  .   +...+..      +...+......+.-|.    
T Consensus       221 svT~ikWvpg~~---------~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~----  287 (636)
T KOG2394|consen  221 SVTCIKWVPGSD---------SLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWH----  287 (636)
T ss_pred             ceEEEEEEeCCC---------ceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeE----
Confidence            345999999887         78888899999999986320  0   0000000      0000111111111111    


Q ss_pred             cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363          171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI  250 (568)
Q Consensus       171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l  250 (568)
                           --...| ..++|+  +||.+||+.+.||.++|||+.+.      ..+..++..-+...|++|+|+|      ++|
T Consensus       288 -----~~~g~i-n~f~FS--~DG~~LA~VSqDGfLRvF~fdt~------eLlg~mkSYFGGLLCvcWSPDG------KyI  347 (636)
T KOG2394|consen  288 -----IGEGSI-NEFAFS--PDGKYLATVSQDGFLRIFDFDTQ------ELLGVMKSYFGGLLCVCWSPDG------KYI  347 (636)
T ss_pred             -----eccccc-cceeEc--CCCceEEEEecCceEEEeeccHH------HHHHHHHhhccceEEEEEcCCc------cEE
Confidence                 122356 778888  89999999999999999999976      5666666667889999999999      999


Q ss_pred             EEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcC
Q 008363          251 LTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLP  287 (568)
Q Consensus       251 as~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp  287 (568)
                      ++|++|- |.||.+... +.+..-++|..+|+.|+|.|
T Consensus       348 vtGGEDDLVtVwSf~er-RVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  348 VTGGEDDLVTVWSFEER-RVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EecCCcceEEEEEeccc-eEEEeccccccceeeEeecc
Confidence            9999999 999999976 88888899999999999984

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.38  E-value=7.6e-10  Score=112.22  Aligned_cols=202  Identities=7%  Similarity=0.041  Sum_probs=129.2

Q ss_pred             EEEEccCCCCcccccCcccEEEEE-eCCCcEEEEECCC-CceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVL-LGNGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~-s~dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      .++++|++          ++|+++ ..++.|.+|++.. +.. .....                        ...... +
T Consensus        39 ~l~~spd~----------~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~------------------------~~~~~~-p   82 (330)
T PRK11028         39 PMVISPDK----------RHLYVGVRPEFRVLSYRIADDGAL-TFAAE------------------------SPLPGS-P   82 (330)
T ss_pred             cEEECCCC----------CEEEEEECCCCcEEEEEECCCCce-EEeee------------------------ecCCCC-c
Confidence            78999999          677655 4588999999973 322 11100                        001112 2


Q ss_pred             eEEEEccCCCCCEEEEEeC-CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-CC-EE
Q 008363          183 LTMEWSTSPPHDYLLAGCH-DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-GG-LK  259 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~-v~  259 (568)
                      ..+.|+  |++++|++++. ++.|.+|++.....  ....+..+. +......++|+|++      +++++++. ++ |.
T Consensus        83 ~~i~~~--~~g~~l~v~~~~~~~v~v~~~~~~g~--~~~~~~~~~-~~~~~~~~~~~p~g------~~l~v~~~~~~~v~  151 (330)
T PRK11028         83 THISTD--HQGRFLFSASYNANCVSVSPLDKDGI--PVAPIQIIE-GLEGCHSANIDPDN------RTLWVPCLKEDRIR  151 (330)
T ss_pred             eEEEEC--CCCCEEEEEEcCCCeEEEEEECCCCC--CCCceeecc-CCCcccEeEeCCCC------CEEEEeeCCCCEEE
Confidence            678888  88988877764 89999999974311  012233332 33446788999998      66655544 46 99


Q ss_pred             EEECCCCCcce------eeeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363          260 FWDIRDPFRPL------WDIHPAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN  332 (568)
Q Consensus       260 lwD~~~~~~~~------~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~  332 (568)
                      +||+.+.....      .... .......++|+|++++++++.. +++|.+||+...      +|+.      ..+..+.
T Consensus       152 v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~------~~~~------~~~~~~~  218 (330)
T PRK11028        152 LFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP------HGEI------ECVQTLD  218 (330)
T ss_pred             EEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC------CCCE------EEEEEEe
Confidence            99998632211      1111 1234578999999999988876 999999999531      1221      1122222


Q ss_pred             cC------CCCEEEEEEecCCCEEEEEe-CCCeEEEEEcCC
Q 008363          333 CS------SFAIWSVQVSRLTGMVAYCS-ADGTVHRFQLTA  366 (568)
Q Consensus       333 ~h------~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~  366 (568)
                      .+      ......+.|+|++++|+++. .++.|.+|++..
T Consensus       219 ~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~  259 (330)
T PRK11028        219 MMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE  259 (330)
T ss_pred             cCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence            11      11234688999999988885 478999999854

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.36  E-value=6.4e-13  Score=137.83  Aligned_cols=116  Identities=18%  Similarity=0.332  Sum_probs=107.5

Q ss_pred             ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363          172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la  251 (568)
                      ..+.||...| +|+.|.  ..|.+|++|+.|..|+||...+.      .++....||++.|+.++.+...      .++|
T Consensus       184 krLlgH~naV-yca~fD--rtg~~Iitgsdd~lvKiwS~et~------~~lAs~rGhs~ditdlavs~~n------~~ia  248 (1113)
T KOG0644|consen  184 KRLLGHRNAV-YCAIFD--RTGRYIITGSDDRLVKIWSMETA------RCLASCRGHSGDITDLAVSSNN------TMIA  248 (1113)
T ss_pred             HHHHhhhhhe-eeeeec--cccceEeecCccceeeeeeccch------hhhccCCCCccccchhccchhh------hhhh
Confidence            3457999999 999988  88999999999999999998876      8999999999999999999987      7999


Q ss_pred             EEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 008363          252 TAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLL  307 (568)
Q Consensus       252 s~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~  307 (568)
                      +++.|. |++|.+.++ .++..+.+|++.|++|+|+|-.    +++.||++++||.|
T Consensus       249 aaS~D~vIrvWrl~~~-~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  249 AASNDKVIRVWRLPDG-APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             hcccCceEEEEecCCC-chHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence            999999 999999988 9999999999999999999965    77889999999987

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.36  E-value=5.1e-11  Score=119.42  Aligned_cols=232  Identities=16%  Similarity=0.169  Sum_probs=157.1

Q ss_pred             EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------------
Q 008363           94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------------  153 (568)
Q Consensus        94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------------  153 (568)
                      .-+.|...+ ..|..+|+|.         -+||+|..--.|++||+......  +..|..                    
T Consensus        46 Qdfe~p~as-t~ik~s~DGq---------Y~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~  113 (703)
T KOG2321|consen   46 QDFEMPTAS-TRIKVSPDGQ---------YLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQ  113 (703)
T ss_pred             HhcCCcccc-ceeEecCCCc---------EEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEee
Confidence            345777744 4999999995         57788888899999999873221  111111                    


Q ss_pred             ------------------------------------ccCCCCceEEEeec-ceecccccCCcCccceEEEEccCCCCCEE
Q 008363          154 ------------------------------------KEGTDPRFVKLEPV-FRCSMLKCGGTQSIPLTMEWSTSPPHDYL  196 (568)
Q Consensus       154 ------------------------------------~~~~~~~~v~~~~~-~~~~~~~~~h~~~V~~~v~~s~~~~g~~l  196 (568)
                                                          ..++...+.++.-. -.++..+....+.+ .+|..+  +-+.+|
T Consensus       114 ~DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~l-N~v~in--~~hgLl  190 (703)
T KOG2321|consen  114 NDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGEL-NVVSIN--EEHGLL  190 (703)
T ss_pred             cCceeeehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccc-eeeeec--CccceE
Confidence                                                11222222222211 11334444555677 888877  667799


Q ss_pred             EEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCC-----eeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcce
Q 008363          197 LAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLP-----IRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPL  270 (568)
Q Consensus       197 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~-----V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~  270 (568)
                      ++|+.||.|..||.+.............+..|.+.     |+++.|+.+|      -.++.|...| |.|||+|+. .++
T Consensus       191 a~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g------L~~aVGts~G~v~iyDLRa~-~pl  263 (703)
T KOG2321|consen  191 ACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG------LHVAVGTSTGSVLIYDLRAS-KPL  263 (703)
T ss_pred             EecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc------eeEEeeccCCcEEEEEcccC-Cce
Confidence            99999999999999876321111222222334333     9999999998      7899999998 999999988 555


Q ss_pred             -eeeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCC
Q 008363          271 -WDIHPAPKFIYGLDWLPDP-GCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG  348 (568)
Q Consensus       271 -~~~~~h~~~i~~l~~sp~~-~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~  348 (568)
                       ..-++..-+|..+.|.+.+ .--+.+.....++|||-        .+|+++        ..+. ....+..+|+-|++.
T Consensus       264 ~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~--------~~Gk~~--------asiE-pt~~lND~C~~p~sG  326 (703)
T KOG2321|consen  264 LVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDE--------CTGKPM--------ASIE-PTSDLNDFCFVPGSG  326 (703)
T ss_pred             eecccCCccceeeecccccCCCceEEecchHHhhhccc--------ccCCce--------eecc-ccCCcCceeeecCCc
Confidence             3344556688999998752 23344455678999998        457664        2433 445689999999999


Q ss_pred             EEEEEeCCCeEEEEEc
Q 008363          349 MVAYCSADGTVHRFQL  364 (568)
Q Consensus       349 ~l~s~s~Dg~v~iwd~  364 (568)
                      +++++-.++.+..|-+
T Consensus       327 m~f~Ane~~~m~~yyi  342 (703)
T KOG2321|consen  327 MFFTANESSKMHTYYI  342 (703)
T ss_pred             eEEEecCCCcceeEEc
Confidence            9999998888777755

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.35  E-value=2.2e-11  Score=129.97  Aligned_cols=193  Identities=16%  Similarity=0.226  Sum_probs=150.5

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD  202 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D  202 (568)
                      ..++.++.+..+.+||...+..+..+....       +. .                -. .++-|-..++.-++++|+--
T Consensus       100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~e-------r~-~----------------l~-~~~~~g~s~~~~~i~~gsv~  154 (967)
T KOG0974|consen  100 KKIALVTSRNSLLIRDSKNSSVLSKIQSDE-------RC-T----------------LY-SSLIIGDSAEELYIASGSVF  154 (967)
T ss_pred             ceEEEEEcCceEEEEecccCceehhcCCCc-------eE-E----------------EE-eEEEEeccCcEEEEEecccc
Confidence            688889999999999998866655431110       00 0                00 22222222556689999999


Q ss_pred             CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeE
Q 008363          203 GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIY  281 (568)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~  281 (568)
                      +.|.+|+....     ..+. .+.+|.+.|.++.|+-+|      .++++.|+|. +|+|++.+........-+|+..|.
T Consensus       155 ~~iivW~~~~d-----n~p~-~l~GHeG~iF~i~~s~dg------~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw  222 (967)
T KOG0974|consen  155 GEIIVWKPHED-----NKPI-RLKGHEGSIFSIVTSLDG------RYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVW  222 (967)
T ss_pred             ccEEEEecccc-----CCcc-eecccCCceEEEEEccCC------cEEEEEecCcceeeeecccccccCcccccccceeE
Confidence            99999998733     2333 677999999999999999      8999999999 999999987444446669999999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCC-CCEEEEEEecCCCEEEEEeCCCeEE
Q 008363          282 GLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS-FAIWSVQVSRLTGMVAYCSADGTVH  360 (568)
Q Consensus       282 ~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~-~~V~~l~~sp~~~~l~s~s~Dg~v~  360 (568)
                      .++|+|.  .|++++.|-+.++|+.         .+..        +..+.+|. ..|+.++..+....++|++.||.++
T Consensus       223 ~~~~~~n--~i~t~gedctcrvW~~---------~~~~--------l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk  283 (967)
T KOG0974|consen  223 ACCFLPN--RIITVGEDCTCRVWGV---------NGTQ--------LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLK  283 (967)
T ss_pred             EEEeccc--eeEEeccceEEEEEec---------ccce--------ehhhhhhhhcceeEEEEcCCceEEEeeccCcchh
Confidence            9999998  8999999999999976         3433        34777786 4699999999999999999999999


Q ss_pred             EEEcCCCeeec
Q 008363          361 RFQLTAKAVEK  371 (568)
Q Consensus       361 iwd~~~~~~~~  371 (568)
                      +|++.....+.
T Consensus       284 ~~~l~~r~~e~  294 (967)
T KOG0974|consen  284 LWDLNGRGLEG  294 (967)
T ss_pred             hhhhhcccccc
Confidence            99997665543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.35  E-value=7.8e-11  Score=127.47  Aligned_cols=224  Identities=12%  Similarity=0.137  Sum_probs=142.1

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS  171 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~  171 (568)
                      +.....|...++ .++.++...         .++++|+.||+|++|+......-.             ...+..      
T Consensus      1041 VAhL~Ehs~~v~-k~a~s~~~~---------s~FvsgS~DGtVKvW~~~k~~~~~-------------~s~rS~------ 1091 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVI-KLAVSSEHT---------SLFVSGSDDGTVKVWNLRKLEGEG-------------GSARSE------ 1091 (1431)
T ss_pred             eehhhhcccccc-ceeecCCCC---------ceEEEecCCceEEEeeehhhhcCc-------------ceeeee------
Confidence            445667888777 777766543         699999999999999987611100             000100      


Q ss_pred             ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCC-CCCceeEEeeCCCC-C-eeEEEEccCCCCCCCCc
Q 008363          172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSS-IDSRPLLCFSADTL-P-IRAVSWAPAESDSDSAN  248 (568)
Q Consensus       172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~-~~~~~~~~~~~h~~-~-V~~v~~~p~~~~~~~~~  248 (568)
                      .+..--...+ .++...  +.++.+|+|+.||.|++.++..-... ....+.+....+.. . |..-+|....   .+ .
T Consensus      1092 ltys~~~sr~-~~vt~~--~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~---~S-~ 1164 (1431)
T KOG1240|consen 1092 LTYSPEGSRV-EKVTMC--GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIV---QS-H 1164 (1431)
T ss_pred             EEEeccCCce-EEEEec--cCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccc---cc-e
Confidence            0111123344 677766  77889999999999999998752111 01122222222322 2 3333333332   12 3


Q ss_pred             EEEEEcCCC-EEEEECCCCCcceeeeC--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccc
Q 008363          249 VILTAGHGG-LKFWDIRDPFRPLWDIH--PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQ  325 (568)
Q Consensus       249 ~las~s~d~-v~lwD~~~~~~~~~~~~--~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~  325 (568)
                      .++.+..-+ |..||++.. ..++.+.  ...+.|++++.+|.+.++++|+..|.+.+||+|-        +.++     
T Consensus      1165 ~lvy~T~~~~iv~~D~r~~-~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF--------~~~i----- 1230 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMR-HDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF--------RVPI----- 1230 (1431)
T ss_pred             eEEEEEeccceEEecchhh-hhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeec--------Ccee-----
Confidence            555555555 999999976 4444433  3457899999999999999999999999999974        2221     


Q ss_pred             cceEEE-ecCCCCEEEEEEecCC---CEEEEEe--CCCeEEEEEcCCCe
Q 008363          326 QGLHLV-NCSSFAIWSVQVSRLT---GMVAYCS--ADGTVHRFQLTAKA  368 (568)
Q Consensus       326 ~~l~~~-~~h~~~V~~l~~sp~~---~~l~s~s--~Dg~v~iwd~~~~~  368 (568)
                         ..+ ..+..+|..|..+|..   ...++++  ..+.|-+|++.++.
T Consensus      1231 ---~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1231 ---LSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred             ---ecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence               222 2345778888777653   4555544  47889999998773

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.34  E-value=2.9e-10  Score=106.66  Aligned_cols=178  Identities=16%  Similarity=0.216  Sum_probs=126.3

Q ss_pred             CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEcc
Q 008363          132 GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFV  211 (568)
Q Consensus       132 g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~  211 (568)
                      ..|.|||=....++.++                           ....+| .+|...    .++|++.- .+.|.||.+.
T Consensus        75 NkviIWDD~k~~~i~el---------------------------~f~~~I-~~V~l~----r~riVvvl-~~~I~VytF~  121 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIEL---------------------------SFNSEI-KAVKLR----RDRIVVVL-ENKIYVYTFP  121 (346)
T ss_pred             ceEEEEecccCcEEEEE---------------------------Eeccce-eeEEEc----CCeEEEEe-cCeEEEEEcC
Confidence            37999996556666553                           334566 788866    34676665 5789999987


Q ss_pred             CCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-C-EEEEECCCCCc-ceeeeCCCCCCeEEEEEcCC
Q 008363          212 ASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-G-LKFWDIRDPFR-PLWDIHPAPKFIYGLDWLPD  288 (568)
Q Consensus       212 ~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-~-v~lwD~~~~~~-~~~~~~~h~~~i~~l~~sp~  288 (568)
                      ..     .+.++.+..-..+=--++..|..    +..+||-=|.. | |.|-|+..... +-..+..|...|.|++.+-+
T Consensus       122 ~n-----~k~l~~~et~~NPkGlC~~~~~~----~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~  192 (346)
T KOG2111|consen  122 DN-----PKLLHVIETRSNPKGLCSLCPTS----NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQ  192 (346)
T ss_pred             CC-----hhheeeeecccCCCceEeecCCC----CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCC
Confidence            43     25555554322221122334433    12456554554 6 99999987633 34677899999999999999


Q ss_pred             CCEEEEEeCCCc-EEEEEccccccCCCCCCCCccCccccceEEEec--CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          289 PGCVILSFDDGA-MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC--SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       289 ~~~l~s~~~dg~-I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~--h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      |..|++++..|+ |||||..        +|.++        ..+..  ....|++|+|||+..+|+++|.-|+|.||.+.
T Consensus       193 Gt~vATaStkGTLIRIFdt~--------~g~~l--------~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~  256 (346)
T KOG2111|consen  193 GTLVATASTKGTLIRIFDTE--------DGTLL--------QELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLR  256 (346)
T ss_pred             ccEEEEeccCcEEEEEEEcC--------CCcEe--------eeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEee
Confidence            999999999887 7999994        47654        33332  34679999999999999999999999999996


Q ss_pred             CC
Q 008363          366 AK  367 (568)
Q Consensus       366 ~~  367 (568)
                      ..
T Consensus       257 ~~  258 (346)
T KOG2111|consen  257 DT  258 (346)
T ss_pred             cC
Confidence            53

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.34  E-value=9.5e-10  Score=111.49  Aligned_cols=204  Identities=8%  Similarity=0.101  Sum_probs=127.6

Q ss_pred             EEEEccCCCCcccccCcccEEEEEe-CCCcEEEEECCC-CceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLL-GNGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s-~dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      .+.|+|++          ++|++++ .++.|.+|++.+ +.....+.              .         ..+. .. |
T Consensus        84 ~i~~~~~g----------~~l~v~~~~~~~v~v~~~~~~g~~~~~~~--------------~---------~~~~-~~-~  128 (330)
T PRK11028         84 HISTDHQG----------RFLFSASYNANCVSVSPLDKDGIPVAPIQ--------------I---------IEGL-EG-C  128 (330)
T ss_pred             EEEECCCC----------CEEEEEEcCCCeEEEEEECCCCCCCCcee--------------e---------ccCC-Cc-c
Confidence            79999999          6777665 489999999974 22111110              0         0111 12 2


Q ss_pred             eEEEEccCCCCCEEEEE-eCCCeEEEEEccCCCCCCC-CceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-CC-E
Q 008363          183 LTMEWSTSPPHDYLLAG-CHDGTVALWKFVASDSSID-SRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-GG-L  258 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sg-s~Dg~I~iwd~~~~~~~~~-~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~-v  258 (568)
                      .+++++  |++++++++ ..++.|.+||+.+...... ......... ......++|+|++      ++++++.. ++ |
T Consensus       129 ~~~~~~--p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg------~~lyv~~~~~~~v  199 (330)
T PRK11028        129 HSANID--PDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQ------QYAYCVNELNSSV  199 (330)
T ss_pred             cEeEeC--CCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCC------CEEEEEecCCCEE
Confidence            677877  888887554 4569999999975311000 000111212 2346789999999      77777765 55 9


Q ss_pred             EEEECCCC--C-cceeeeCC------CCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccce
Q 008363          259 KFWDIRDP--F-RPLWDIHP------APKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       259 ~lwD~~~~--~-~~~~~~~~------h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                      .+||+...  . ..+..+..      +......+.|+|++++|+++.. ++.|.+|++...       +..+     ..+
T Consensus       200 ~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~-------~~~~-----~~~  267 (330)
T PRK11028        200 DVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED-------GSVL-----SFE  267 (330)
T ss_pred             EEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC-------CCeE-----EEe
Confidence            99999742  1 22222221      1222346899999999999855 789999999531       1111     111


Q ss_pred             EEEecCCCCEEEEEEecCCCEEEEEeC-CCeEEEEEcC
Q 008363          329 HLVNCSSFAIWSVQVSRLTGMVAYCSA-DGTVHRFQLT  365 (568)
Q Consensus       329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~-Dg~v~iwd~~  365 (568)
                      ...... ...+.+.|+|+|++|+++.. +++|.+|++.
T Consensus       268 ~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        268 GHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            222211 23467899999999888775 8999999874

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=2.5e-10  Score=119.61  Aligned_cols=188  Identities=16%  Similarity=0.169  Sum_probs=120.4

Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCC---CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHD---GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la  251 (568)
                      ..+...+ .+.+|+  |+|+.|+..+.+   ..|.+||+.++      ... .+....+.+...+|+|++      ..|+
T Consensus       192 ~~~~~~v-~~p~wS--PDG~~la~~s~~~~~~~I~~~dl~~g------~~~-~l~~~~g~~~~~~~SPDG------~~la  255 (427)
T PRK02889        192 LSSPEPI-ISPAWS--PDGTKLAYVSFESKKPVVYVHDLATG------RRR-VVANFKGSNSAPAWSPDG------RTLA  255 (427)
T ss_pred             ccCCCCc-ccceEc--CCCCEEEEEEccCCCcEEEEEECCCC------CEE-EeecCCCCccceEECCCC------CEEE
Confidence            3455666 889999  899999887643   35999999866      322 222334556789999999      5555


Q ss_pred             -EEcCCC-EEEE--ECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCcccc
Q 008363          252 -TAGHGG-LKFW--DIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQ  326 (568)
Q Consensus       252 -s~s~d~-v~lw--D~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~  326 (568)
                       +.+.++ ..||  |+.+.  ....+..+........|+|||+.|+..+. +|...||.+..      .++..       
T Consensus       256 ~~~~~~g~~~Iy~~d~~~~--~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~------~~g~~-------  320 (427)
T PRK02889        256 VALSRDGNSQIYTVNADGS--GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA------SGGAA-------  320 (427)
T ss_pred             EEEccCCCceEEEEECCCC--CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEEC------CCCce-------
Confidence             566665 5555  45433  34455555555678899999999887765 56777776632      11221       


Q ss_pred             ceEEEecCCCCEEEEEEecCCCEEEEEeCCC---eEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEccc
Q 008363          327 GLHLVNCSSFAIWSVQVSRLTGMVAYCSADG---TVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTP  398 (568)
Q Consensus       327 ~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~  398 (568)
                        ..+..+.......+|+|+|++|+..+.++   .|.+||+.++....-... ..  ....++++++..|...+.
T Consensus       321 --~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~-~~--~~~p~~spdg~~l~~~~~  390 (427)
T PRK02889        321 --QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT-TR--DESPSFAPNGRYILYATQ  390 (427)
T ss_pred             --EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC-CC--ccCceECCCCCEEEEEEe
Confidence              12222222334678999999998877664   699999987765433211 11  122367788888776544

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.33  E-value=2.5e-10  Score=120.20  Aligned_cols=237  Identities=14%  Similarity=0.122  Sum_probs=160.7

Q ss_pred             EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC----------c--------c
Q 008363           94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM----------K--------E  155 (568)
Q Consensus        94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~----------~--------~  155 (568)
                      .+.+|...+. .+.+.|...       ...++.+++.||.|++||...+..++++..+..          +        +
T Consensus        52 ~l~~~~a~l~-s~~~~~~~~-------~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s  123 (792)
T KOG1963|consen   52 SLEDHTAPLT-SVIVLPSSE-------NANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVS  123 (792)
T ss_pred             hcccccCccc-eeeecCCCc-------cceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEee
Confidence            4567777455 888888763       235788999999999999999988887744332          0        0


Q ss_pred             CCCCceEEEe-----------ecce----ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCc
Q 008363          156 GTDPRFVKLE-----------PVFR----CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSR  220 (568)
Q Consensus       156 ~~~~~~v~~~-----------~~~~----~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~  220 (568)
                      ......+...           .+.+    ......+|..  +.++..+  +.|.+.+ ...+..+.+|.+.....  ...
T Consensus       124 ~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~--~~~I~~~--~~ge~~~-i~~~~~~~~~~v~~~~~--~~~  196 (792)
T KOG1963|consen  124 VEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE--PKSIVDN--NSGEFKG-IVHMCKIHIYFVPKHTK--HTS  196 (792)
T ss_pred             cccceeeeecccccccceeeeEeeeccccchhhhhhhcC--CccEEEc--CCceEEE-EEEeeeEEEEEecccce--eec
Confidence            0000000000           0000    0011122322  2566766  5554444 44456789999886421  001


Q ss_pred             eeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCC---CCcceeeeCCCCCCeEEEEEcCCCCEEEEEe
Q 008363          221 PLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRD---PFRPLWDIHPAPKFIYGLDWLPDPGCVILSF  296 (568)
Q Consensus       221 ~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~---~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~  296 (568)
                      ....-..|.-.+++.+++|.+      .++|++..|| |.+|.--.   .......++-|...|++++|+++|.+|++||
T Consensus       197 ~~~~~~~Htf~~t~~~~spn~------~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG  270 (792)
T KOG1963|consen  197 SRDITVHHTFNITCVALSPNE------RYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG  270 (792)
T ss_pred             cchhhhhhcccceeEEecccc------ceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecc
Confidence            111223467779999999999      8999999999 99995433   1134467778889999999999999999999


Q ss_pred             CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363          297 DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       297 ~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~  368 (568)
                      ..+.+.+|.+..        ++.         .-+..-.++|..+.++||+.+.+....|..|.+-...+..
T Consensus       271 ~E~VLv~Wq~~T--------~~k---------qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~  325 (792)
T KOG1963|consen  271 REGVLVLWQLET--------GKK---------QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLE  325 (792)
T ss_pred             cceEEEEEeecC--------CCc---------ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence            999999999943        332         2445567899999999999999999999999999875443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=5.2e-10  Score=117.13  Aligned_cols=192  Identities=13%  Similarity=0.116  Sum_probs=124.5

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEe---CCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLL---GNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGT  178 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s---~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~  178 (568)
                      .+...+|+|+|          +.|+..+   .+..|.+|++.+++....                           ....
T Consensus       200 ~~~~p~wSPDG----------~~la~~s~~~g~~~i~i~dl~~G~~~~l---------------------------~~~~  242 (429)
T PRK03629        200 PLMSPAWSPDG----------SKLAYVTFESGRSALVIQTLANGAVRQV---------------------------ASFP  242 (429)
T ss_pred             ceeeeEEcCCC----------CEEEEEEecCCCcEEEEEECCCCCeEEc---------------------------cCCC
Confidence            45599999999          6777654   345799999988653321                           1112


Q ss_pred             CccceEEEEccCCCCCEEEEE-eCCC--eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363          179 QSIPLTMEWSTSPPHDYLLAG-CHDG--TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH  255 (568)
Q Consensus       179 ~~V~~~v~~s~~~~g~~l~sg-s~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~  255 (568)
                      ..+ ..+.|+  |+|+.|+.. +.+|  .|.+||+.++      ... .+..+...+....|+|++      +.|+.++.
T Consensus       243 ~~~-~~~~~S--PDG~~La~~~~~~g~~~I~~~d~~tg------~~~-~lt~~~~~~~~~~wSPDG------~~I~f~s~  306 (429)
T PRK03629        243 RHN-GAPAFS--PDGSKLAFALSKTGSLNLYVMDLASG------QIR-QVTDGRSNNTEPTWFPDS------QNLAYTSD  306 (429)
T ss_pred             CCc-CCeEEC--CCCCEEEEEEcCCCCcEEEEEECCCC------CEE-EccCCCCCcCceEECCCC------CEEEEEeC
Confidence            223 567899  899888765 4455  4888898765      333 333445567889999999      77766655


Q ss_pred             -CC---EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEccccccCCCCCCCCccCccccce
Q 008363          256 -GG---LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDD---GAMRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       256 -d~---v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d---g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                       ++   |.++|+.++.  ...+..+........|+|||++|+..+.+   ..|++||+..        |..         
T Consensus       307 ~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~--------g~~---------  367 (429)
T PRK03629        307 QAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT--------GGV---------  367 (429)
T ss_pred             CCCCceEEEEECCCCC--eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC--------CCe---------
Confidence             33   4555666542  22333334445678999999999887553   3588888843        332         


Q ss_pred             EEEecCCCCEEEEEEecCCCEEEEEeCCCe---EEEEEcCC
Q 008363          329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGT---VHRFQLTA  366 (568)
Q Consensus       329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~---v~iwd~~~  366 (568)
                      ..+... .......|+|+|++|+.++.++.   +.++++..
T Consensus       368 ~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G  407 (429)
T PRK03629        368 QVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG  407 (429)
T ss_pred             EEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence            222211 22346789999999999998865   66667643

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=4.1e-10  Score=117.97  Aligned_cols=189  Identities=15%  Similarity=0.120  Sum_probs=121.3

Q ss_pred             ccCCceeeEEEEccCCCCcccccCcccEEEEEeCC---CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363           97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGN---GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML  173 (568)
Q Consensus        97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~d---g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~  173 (568)
                      .+.. .+.+.+|+|++          +.|+..+.+   ..|.+||+.+++....                          
T Consensus       193 ~~~~-~v~~p~wSPDG----------~~la~~s~~~~~~~I~~~dl~~g~~~~l--------------------------  235 (427)
T PRK02889        193 SSPE-PIISPAWSPDG----------TKLAYVSFESKKPVVYVHDLATGRRRVV--------------------------  235 (427)
T ss_pred             cCCC-CcccceEcCCC----------CEEEEEEccCCCcEEEEEECCCCCEEEe--------------------------
Confidence            4555 44589999999          678777643   3599999988764322                          


Q ss_pred             ccCCcCccceEEEEccCCCCCEEE-EEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363          174 KCGGTQSIPLTMEWSTSPPHDYLL-AGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILT  252 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g~~l~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las  252 (568)
                       ......+ .+.+|+  |+|+.|+ +.+.+|...||.+....     .....+..|...+....|+|+|      ..|+.
T Consensus       236 -~~~~g~~-~~~~~S--PDG~~la~~~~~~g~~~Iy~~d~~~-----~~~~~lt~~~~~~~~~~wSpDG------~~l~f  300 (427)
T PRK02889        236 -ANFKGSN-SAPAWS--PDGRTLAVALSRDGNSQIYTVNADG-----SGLRRLTQSSGIDTEPFFSPDG------RSIYF  300 (427)
T ss_pred             -ecCCCCc-cceEEC--CCCCEEEEEEccCCCceEEEEECCC-----CCcEECCCCCCCCcCeEEcCCC------CEEEE
Confidence             1122333 678999  8898876 56778887887765321     2234454555566778999999      66665


Q ss_pred             EcC-CC-EEEEEC--CCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEccccccCCCCCCCCccCccc
Q 008363          253 AGH-GG-LKFWDI--RDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDG---AMRIVSLLKAAYDVPATGKPFAGTKQ  325 (568)
Q Consensus       253 ~s~-d~-v~lwD~--~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg---~I~lwd~~~~~~~~~~~g~~~~~~~~  325 (568)
                      .+. ++ ..||.+  .++......+.  .......+|+|||++|+..+.++   .|++||+..        |+.      
T Consensus       301 ~s~~~g~~~Iy~~~~~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~--------g~~------  364 (427)
T PRK02889        301 TSDRGGAPQIYRMPASGGAAQRVTFT--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT--------GQV------  364 (427)
T ss_pred             EecCCCCcEEEEEECCCCceEEEecC--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC--------CCe------
Confidence            554 34 555544  44322122222  33345688999999999876644   699999843        332      


Q ss_pred             cceEEEecCCCCEEEEEEecCCCEEEEEeCCC
Q 008363          326 QGLHLVNCSSFAIWSVQVSRLTGMVAYCSADG  357 (568)
Q Consensus       326 ~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg  357 (568)
                         ..+..+ .....+.|+|+|++|+.++.++
T Consensus       365 ---~~lt~~-~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        365 ---TALTDT-TRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             ---EEccCC-CCccCceECCCCCEEEEEEecC
Confidence               122222 2346789999999888887554

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=6.7e-10  Score=116.84  Aligned_cols=198  Identities=8%  Similarity=0.066  Sum_probs=130.2

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeC---CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecc
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLG---NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSM  172 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~---dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~  172 (568)
                      ..|.. .+...+|+|++          +.|+..+.   +..|.+||+.+++... +                        
T Consensus       198 t~~~~-~v~~p~wSpDG----------~~lay~s~~~g~~~i~~~dl~~g~~~~-l------------------------  241 (435)
T PRK05137        198 TDGSS-LVLTPRFSPNR----------QEITYMSYANGRPRVYLLDLETGQREL-V------------------------  241 (435)
T ss_pred             ecCCC-CeEeeEECCCC----------CEEEEEEecCCCCEEEEEECCCCcEEE-e------------------------
Confidence            35555 45599999999          67777653   4689999998865432 2                        


Q ss_pred             cccCCcCccceEEEEccCCCCCEEE-EEeCCCe--EEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcE
Q 008363          173 LKCGGTQSIPLTMEWSTSPPHDYLL-AGCHDGT--VALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV  249 (568)
Q Consensus       173 ~~~~h~~~V~~~v~~s~~~~g~~l~-sgs~Dg~--I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~  249 (568)
                        ..+...+ .+.+|+  |+|+.|+ +.+.+|.  |.+||+.++      . ...+..+........|+|++      ..
T Consensus       242 --~~~~g~~-~~~~~S--PDG~~la~~~~~~g~~~Iy~~d~~~~------~-~~~Lt~~~~~~~~~~~spDG------~~  303 (435)
T PRK05137        242 --GNFPGMT-FAPRFS--PDGRKVVMSLSQGGNTDIYTMDLRSG------T-TTRLTDSPAIDTSPSYSPDG------SQ  303 (435)
T ss_pred             --ecCCCcc-cCcEEC--CCCCEEEEEEecCCCceEEEEECCCC------c-eEEccCCCCccCceeEcCCC------CE
Confidence              2334445 778999  8898775 5556665  666677654      2 34455566667789999999      67


Q ss_pred             EEEEcC-C--C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEccccccCCCCCCCCccC
Q 008363          250 ILTAGH-G--G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDD---GAMRIVSLLKAAYDVPATGKPFAG  322 (568)
Q Consensus       250 las~s~-d--~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d---g~I~lwd~~~~~~~~~~~g~~~~~  322 (568)
                      |+..+. +  . |++||+.++ . ...+..+...+....|+|+|+.|+..+.+   ..|.+||+..        +..   
T Consensus       304 i~f~s~~~g~~~Iy~~d~~g~-~-~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~--------~~~---  370 (435)
T PRK05137        304 IVFESDRSGSPQLYVMNADGS-N-PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG--------SGE---  370 (435)
T ss_pred             EEEEECCCCCCeEEEEECCCC-C-eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC--------Cce---
Confidence            766653 2  2 888898754 2 22333334556778999999999887653   3577788632        111   


Q ss_pred             ccccceEEEecCCCCEEEEEEecCCCEEEEEeCC------CeEEEEEcCCC
Q 008363          323 TKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD------GTVHRFQLTAK  367 (568)
Q Consensus       323 ~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D------g~v~iwd~~~~  367 (568)
                            ..+. ....+..+.|+|+|++|+..+.+      ..|+++++..+
T Consensus       371 ------~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        371 ------RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             ------Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence                  1222 22346678999999988776643      25777777544

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.30  E-value=1.4e-10  Score=111.48  Aligned_cols=166  Identities=16%  Similarity=0.135  Sum_probs=132.7

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCC--CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGN--GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~d--g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      .|.-+|..+         .++|+|+..  ..+.|||+...  .+.+..........+-.+.+|+                
T Consensus       153 ~~r~~~~~p---------~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvpnD~L~LrVPvW~----------------  205 (412)
T KOG3881|consen  153 DVRQTDTDP---------YIVATGGKENINELKIWDLEQS--KQIWSAKNVPNDRLGLRVPVWI----------------  205 (412)
T ss_pred             eeccCCCCC---------ceEecCchhcccceeeeecccc--eeeeeccCCCCccccceeeeee----------------
Confidence            677777765         788889998  88999999985  4444333322333333444444                


Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW  261 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw  261 (568)
                      +.+.|-+..+...||+++.-+.|++||.+.+     .+|+..|.--+.+|+++...|.+      ++|++|..-+ +..|
T Consensus       206 tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q-----RRPV~~fd~~E~~is~~~l~p~g------n~Iy~gn~~g~l~~F  274 (412)
T KOG3881|consen  206 TDIRFLEGSPNYKFATITRYHQVRLYDTRHQ-----RRPVAQFDFLENPISSTGLTPSG------NFIYTGNTKGQLAKF  274 (412)
T ss_pred             ccceecCCCCCceEEEEecceeEEEecCccc-----CcceeEeccccCcceeeeecCCC------cEEEEecccchhhee
Confidence            5666663323679999999999999999866     47888888889999999999999      8999999988 9999


Q ss_pred             ECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363          262 DIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK  308 (568)
Q Consensus       262 D~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~  308 (568)
                      |++.+......+.+..+.|.+|..+|.+++|+++|-|+.|||+|+.+
T Consensus       275 D~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  275 DLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             cccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            99988444455888899999999999999999999999999999953

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.30  E-value=1.1e-10  Score=108.23  Aligned_cols=222  Identities=14%  Similarity=0.229  Sum_probs=153.1

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS  171 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~  171 (568)
                      .+++..|.+ . +.+.|+.....     . --.|+-+-.+|.|.++..........+.+-+.                 .
T Consensus        63 ~~q~~dts~-~-~dm~w~~~~~~-----g-~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~-----------------~  117 (339)
T KOG0280|consen   63 TLQCTDTST-E-FDMLWRIRETD-----G-DFNLLDAHARGQIQLYRNDEDESSVHLRGLSS-----------------K  117 (339)
T ss_pred             eeeeecccc-c-ceeeeeeccCC-----c-cceeeeccccceEEEEeeccceeeeeecccch-----------------h
Confidence            344566666 3 37888753210     0 02677778889999998776444333322110                 0


Q ss_pred             ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363          172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la  251 (568)
                      ..   .... +.+++|+  +.+..++++-.+|.+.+-+.....    .+.++.+++|.-.++...|+...     |+++.
T Consensus       118 ki---~~~~-~lslD~~--~~~~~i~vs~s~G~~~~v~~t~~~----le~vq~wk~He~E~Wta~f~~~~-----pnlvy  182 (339)
T KOG0280|consen  118 KI---SVVE-ALSLDIS--TSGTKIFVSDSRGSISGVYETEMV----LEKVQTWKVHEFEAWTAKFSDKE-----PNLVY  182 (339)
T ss_pred             hh---hhee-eeEEEee--ccCceEEEEcCCCcEEEEecceee----eeecccccccceeeeeeecccCC-----CceEE
Confidence            00   0011 3789999  667789999999999966655442    25556889999999999999886     69999


Q ss_pred             EEcCCC-EEEEECCCCCcceee-eCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363          252 TAGHGG-LKFWDIRDPFRPLWD-IHPAPKFIYGLDWLP-DPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       252 s~s~d~-v~lwD~~~~~~~~~~-~~~h~~~i~~l~~sp-~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                      +||+|+ +..||+|.+...++. ..-|...|.+|.-+| .+.+|++|+.|-.|++||.|++.       +++        
T Consensus       183 tGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~-------kPl--------  247 (339)
T KOG0280|consen  183 TGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG-------KPL--------  247 (339)
T ss_pred             ecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc-------Ccc--------
Confidence            999999 999999966555544 557888899998876 57899999999999999999754       443        


Q ss_pred             EEEecCCCCEEEEEEecCC--CEEEEEeCCCeEEEEEcCCCeee
Q 008363          329 HLVNCSSFAIWSVQVSRLT--GMVAYCSADGTVHRFQLTAKAVE  370 (568)
Q Consensus       329 ~~~~~h~~~V~~l~~sp~~--~~l~s~s~Dg~v~iwd~~~~~~~  370 (568)
                      .. ..-.+.||.+.++|..  .+|++|- -.-.+|-+.+....+
T Consensus       248 ~~-~~v~GGVWRi~~~p~~~~~lL~~CM-h~G~ki~~~~~~~~e  289 (339)
T KOG0280|consen  248 FK-AKVGGGVWRIKHHPEIFHRLLAACM-HNGAKILDSSDKVLE  289 (339)
T ss_pred             cc-CccccceEEEEecchhhhHHHHHHH-hcCceEEEecccccc
Confidence            21 1233889999999974  3444444 444677777655444

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=7.1e-10  Score=116.52  Aligned_cols=196  Identities=14%  Similarity=0.112  Sum_probs=127.1

Q ss_pred             ccCCceeeEEEEccCCCCcccccCcccEEEEEeC---CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363           97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLG---NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML  173 (568)
Q Consensus        97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~---dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~  173 (568)
                      .|.. .+...+|+|++          +.|+.++.   +..|.+||+.+++....                          
T Consensus       201 ~~~~-~v~~p~wSpDg----------~~la~~s~~~~~~~l~~~dl~~g~~~~l--------------------------  243 (433)
T PRK04922        201 RSAE-PILSPAWSPDG----------KKLAYVSFERGRSAIYVQDLATGQRELV--------------------------  243 (433)
T ss_pred             cCCC-ccccccCCCCC----------CEEEEEecCCCCcEEEEEECCCCCEEEe--------------------------
Confidence            4444 44489999999          78887764   34699999988654321                          


Q ss_pred             ccCCcCccceEEEEccCCCCCEEE-EEeCCC--eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363          174 KCGGTQSIPLTMEWSTSPPHDYLL-AGCHDG--TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI  250 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g~~l~-sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l  250 (568)
                       ..+.... .+++|+  |+|+.|+ +.+.+|  .|.+||+.++      . +..+..|......++|+|++      ..|
T Consensus       244 -~~~~g~~-~~~~~S--pDG~~l~~~~s~~g~~~Iy~~d~~~g------~-~~~lt~~~~~~~~~~~spDG------~~l  306 (433)
T PRK04922        244 -ASFRGIN-GAPSFS--PDGRRLALTLSRDGNPEIYVMDLGSR------Q-LTRLTNHFGIDTEPTWAPDG------KSI  306 (433)
T ss_pred             -ccCCCCc-cCceEC--CCCCEEEEEEeCCCCceEEEEECCCC------C-eEECccCCCCccceEECCCC------CEE
Confidence             2222333 578999  8898775 455566  5889998765      2 23444555556788999999      677


Q ss_pred             EEEcC-CC---EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEccccccCCCCCCCCccCc
Q 008363          251 LTAGH-GG---LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDG---AMRIVSLLKAAYDVPATGKPFAGT  323 (568)
Q Consensus       251 as~s~-d~---v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg---~I~lwd~~~~~~~~~~~g~~~~~~  323 (568)
                      +.++. ++   |.++|+.++..  ..+..+......++|+|||++|+..+.++   .|.+||+..        |+.    
T Consensus       307 ~f~sd~~g~~~iy~~dl~~g~~--~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~--------g~~----  372 (433)
T PRK04922        307 YFTSDRGGRPQIYRVAASGGSA--ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST--------GSV----  372 (433)
T ss_pred             EEEECCCCCceEEEEECCCCCe--EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC--------CCe----
Confidence            66654 33   77777765522  22222233455789999999998875433   689999842        332    


Q ss_pred             cccceEEEecCCCCEEEEEEecCCCEEEEEeCC---CeEEEEEcCC
Q 008363          324 KQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD---GTVHRFQLTA  366 (568)
Q Consensus       324 ~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D---g~v~iwd~~~  366 (568)
                           ..+. +........|+|+|++|+..+.+   +.|.++++..
T Consensus       373 -----~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        373 -----RTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             -----EECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence                 1222 22234567899999988877653   3577777754

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.29  E-value=4.7e-11  Score=122.68  Aligned_cols=211  Identities=17%  Similarity=0.317  Sum_probs=160.5

Q ss_pred             ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC-CceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363           97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC  175 (568)
Q Consensus        97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~  175 (568)
                      .-.+++. ++..+|.|          +-+|.++.-| +.+-|+.. +...+-+                           
T Consensus        22 ~v~~~~~-a~si~p~g----------rdi~lAsr~g-l~i~dld~p~~ppr~l---------------------------   62 (1081)
T KOG0309|consen   22 KVDGGFN-AVSINPSG----------RDIVLASRQG-LYIIDLDDPFTPPRWL---------------------------   62 (1081)
T ss_pred             EecCccc-ceeecccc----------chhhhhhhcC-eEEEeccCCCCCceee---------------------------
Confidence            3344344 89999999          5677777766 56667766 2222221                           


Q ss_pred             CCc--CccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363          176 GGT--QSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA  253 (568)
Q Consensus       176 ~h~--~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~  253 (568)
                      .|.  -.| -.+.|+|++.-.+-++......-.+|++.....   ......+.+|+..|+++.|+|..     |.++|++
T Consensus        63 ~h~tpw~v-ad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~---~aIef~lhghsraitd~n~~~q~-----pdVlatc  133 (1081)
T KOG0309|consen   63 HHITPWQV-ADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS---NAIEFVLHGHSRAITDINFNPQH-----PDVLATC  133 (1081)
T ss_pred             eccCcchh-cceecccCCCCceeEEecCcchhhhhhhhcCCc---cceEEEEecCccceeccccCCCC-----Ccceeec
Confidence            111  123 567899888777777777777888999875422   23444667999999999999986     7999999


Q ss_pred             cCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363          254 GHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN  332 (568)
Q Consensus       254 s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~  332 (568)
                      +.|. |..||++++..++..+.........|.|+--...+++.+..+.|++||+|...               .++..++
T Consensus       134 svdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs---------------~pl~s~K  198 (1081)
T KOG0309|consen  134 SVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS---------------TPLCSLK  198 (1081)
T ss_pred             cccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCC---------------cceEEec
Confidence            9999 99999999988888777666667889999866667777888899999998633               4467899


Q ss_pred             cCCCCEEEEEEecC-CCEEEEEeCCCeEEEEEcCCCeee
Q 008363          333 CSSFAIWSVQVSRL-TGMVAYCSADGTVHRFQLTAKAVE  370 (568)
Q Consensus       333 ~h~~~V~~l~~sp~-~~~l~s~s~Dg~v~iwd~~~~~~~  370 (568)
                      +|...|+.+.|... ...+.+++.||+|++||......+
T Consensus       199 ~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e  237 (1081)
T KOG0309|consen  199 GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE  237 (1081)
T ss_pred             ccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence            99999999999876 478999999999999999765444

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.28  E-value=1.2e-11  Score=120.88  Aligned_cols=161  Identities=18%  Similarity=0.277  Sum_probs=132.8

Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCC---------------------------------CCCceeEEeeCC
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSS---------------------------------IDSRPLLCFSAD  228 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~---------------------------------~~~~~~~~~~~h  228 (568)
                      |+.+.+.  .+|++|+.|+.-|.|..+|..+..+.                                 ..+..+++++.|
T Consensus       132 PY~~~yt--rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~  209 (545)
T KOG1272|consen  132 PYHLDYT--RNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRH  209 (545)
T ss_pred             Ceeeeec--CCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhc
Confidence            4788988  89999999999999999999877541                                 112233333333


Q ss_pred             CCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 008363          229 TLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLL  307 (568)
Q Consensus       229 ~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~  307 (568)
                       ..|..+.|.|..      .+|++++..| ++.-|+.++ ..+..+..-.+.+..++-+|-...+-+|...|+|.+|...
T Consensus       210 -~~v~rLeFLPyH------fLL~~~~~~G~L~Y~DVS~G-klVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~  281 (545)
T KOG1272|consen  210 -IRVARLEFLPYH------FLLVAASEAGFLKYQDVSTG-KLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPN  281 (545)
T ss_pred             -Cchhhhcccchh------heeeecccCCceEEEeechh-hhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCC
Confidence             447888999997      7888888888 999999998 7777777777888999999999999999999999999983


Q ss_pred             ccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363          308 KAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       308 ~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~  368 (568)
                      .        .        .++..+-+|.++|.+|++.++|.|++|.+.|..|+|||+....
T Consensus       282 s--------k--------ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~  326 (545)
T KOG1272|consen  282 S--------K--------EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY  326 (545)
T ss_pred             C--------c--------chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc
Confidence            3        2        3445778899999999999999999999999999999997654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=1.4e-09  Score=114.39  Aligned_cols=185  Identities=12%  Similarity=0.117  Sum_probs=123.4

Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeC---CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE-
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCH---DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI-  250 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l-  250 (568)
                      ..|...+ .+.+|+  |+|+.|+..+.   +..|.+||+.++      .. ..+..+.+.+...+|+|+|      ..| 
T Consensus       198 t~~~~~v-~~p~wS--pDG~~lay~s~~~g~~~i~~~dl~~g------~~-~~l~~~~g~~~~~~~SPDG------~~la  261 (435)
T PRK05137        198 TDGSSLV-LTPRFS--PNRQEITYMSYANGRPRVYLLDLETG------QR-ELVGNFPGMTFAPRFSPDG------RKVV  261 (435)
T ss_pred             ecCCCCe-EeeEEC--CCCCEEEEEEecCCCCEEEEEECCCC------cE-EEeecCCCcccCcEECCCC------CEEE
Confidence            4566677 899999  89998888764   468999999866      22 2344556677889999999      555 


Q ss_pred             EEEcCCC---EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEEccccccCCCCCCCCccCcc
Q 008363          251 LTAGHGG---LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DG--AMRIVSLLKAAYDVPATGKPFAGTK  324 (568)
Q Consensus       251 as~s~d~---v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg--~I~lwd~~~~~~~~~~~g~~~~~~~  324 (568)
                      ++.+.++   |.+||+.++  .+..+..+........|+|||+.|+..+. +|  .|++||+..        +..     
T Consensus       262 ~~~~~~g~~~Iy~~d~~~~--~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g--------~~~-----  326 (435)
T PRK05137        262 MSLSQGGNTDIYTMDLRSG--TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG--------SNP-----  326 (435)
T ss_pred             EEEecCCCceEEEEECCCC--ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC--------CCe-----
Confidence            4555443   888898865  33445556666678999999999988764 33  577777632        222     


Q ss_pred             ccceEEEecCCCCEEEEEEecCCCEEEEEeCC---CeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363          325 QQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD---GTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNT  397 (568)
Q Consensus       325 ~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D---g~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~  397 (568)
                          ..+..+...+....|+|+|++|+..+.+   ..|.+|++.++........   ......++++++..|....
T Consensus       327 ----~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~---~~~~~p~~spDG~~i~~~~  395 (435)
T PRK05137        327 ----RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSG---FLVEGPTWAPNGRVIMFFR  395 (435)
T ss_pred             ----EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCC---CCCCCCeECCCCCEEEEEE
Confidence                2333344556778999999999887654   3688888865543222111   1123346778887776543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.26  E-value=2.2e-10  Score=108.93  Aligned_cols=181  Identities=12%  Similarity=0.109  Sum_probs=128.3

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWD  262 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD  262 (568)
                      ..++|+++  -..+|++..|-+|++|+-...      .+...-......|++++|-|.+     ...|+.|...+|.||.
T Consensus       102 r~~aWhqH--~~~fava~nddvVriy~ksst------~pt~Lks~sQrnvtclawRPls-----aselavgCr~gIciW~  168 (445)
T KOG2139|consen  102 RGVAWHQH--IIAFAVATNDDVVRIYDKSST------CPTKLKSVSQRNVTCLAWRPLS-----ASELAVGCRAGICIWS  168 (445)
T ss_pred             eeEeechh--hhhhhhhccCcEEEEeccCCC------CCceecchhhcceeEEEeccCC-----cceeeeeecceeEEEE
Confidence            67899943  446889999999999997754      2211112235679999999997     3789999999999997


Q ss_pred             CCCCC---cc----------eeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccce
Q 008363          263 IRDPF---RP----------LWDIHPAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       263 ~~~~~---~~----------~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                      .....   ++          +....+| .+|+++.|.+||..+++++. |..|.|||...        |..+      ++
T Consensus       169 ~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt--------g~~~------pL  233 (445)
T KOG2139|consen  169 DSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT--------GQKI------PL  233 (445)
T ss_pred             cCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC--------CCcc------cc
Confidence            75432   11          1112244 57999999999999999876 78999999954        4332      12


Q ss_pred             EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee-eccCCCCCcceeeeecccCCCCceEE
Q 008363          329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV-EKDHSRNRPMHFLCGSVTEDESAITV  395 (568)
Q Consensus       329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~i~~  395 (568)
                      .  ...-+.+.-+.|||++.+|+.++-|+..++|+...... ++-.-.  ..+...+.++++|..|.+
T Consensus       234 ~--~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg--sgrvqtacWspcGsfLLf  297 (445)
T KOG2139|consen  234 I--PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG--SGRVQTACWSPCGSFLLF  297 (445)
T ss_pred             c--ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceecc--CCceeeeeecCCCCEEEE
Confidence            2  23346788899999999999999999999996654322 221111  125556678888888765

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.26  E-value=4.8e-10  Score=113.36  Aligned_cols=205  Identities=13%  Similarity=0.135  Sum_probs=149.8

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEcc--CCCCCEEEEEe
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWST--SPPHDYLLAGC  200 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~--~~~g~~l~sgs  200 (568)
                      .++|....||.++||+...++....+.+....+++  ++...|....     ....... .++.|..  ..+...|+-|.
T Consensus         6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t--~~~~~w~L~~-----~~s~~k~-~~~~~~~~~s~~t~~lvlgt   77 (541)
T KOG4547|consen    6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGT--CTYTKWGLSA-----DYSPMKW-LSLEKAKKASLDTSMLVLGT   77 (541)
T ss_pred             heEeecCCCCeEEEEEccCceeeeeeccchhccCc--ceeEEEEEEe-----ccchHHH-HhHHHHhhccCCceEEEeec
Confidence            79999999999999999998888777554433322  2222333110     0000001 1111110  13445888999


Q ss_pred             CCCeEEEEEccCCCCCCCCceeEEe--eCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCC
Q 008363          201 HDGTVALWKFVASDSSIDSRPLLCF--SADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAP  277 (568)
Q Consensus       201 ~Dg~I~iwd~~~~~~~~~~~~~~~~--~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~  277 (568)
                      ..|.|.+|++..+      +....+  ..|.+.|.++.++.+-      ..|.|++.|. +..|+.... .........+
T Consensus        78 ~~g~v~~ys~~~g------~it~~~st~~h~~~v~~~~~~~~~------~ciyS~~ad~~v~~~~~~~~-~~~~~~~~~~  144 (541)
T KOG4547|consen   78 PQGSVLLYSVAGG------EITAKLSTDKHYGNVNEILDAQRL------GCIYSVGADLKVVYILEKEK-VIIRIWKEQK  144 (541)
T ss_pred             CCccEEEEEecCC------eEEEEEecCCCCCcceeeeccccc------CceEecCCceeEEEEecccc-eeeeeeccCC
Confidence            9999999999877      444444  4799999999999887      7999999999 999999976 6667777778


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecC-----CCEE-E
Q 008363          278 KFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL-----TGMV-A  351 (568)
Q Consensus       278 ~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~-----~~~l-~  351 (568)
                      ..+.+++.+|||..|++++  +.|.+||+.        +++.        +..|.||.++|.++.|.-.     |.++ .
T Consensus       145 ~~~~sl~is~D~~~l~~as--~~ik~~~~~--------~kev--------v~~ftgh~s~v~t~~f~~~~~g~~G~~vLs  206 (541)
T KOG4547|consen  145 PLVSSLCISPDGKILLTAS--RQIKVLDIE--------TKEV--------VITFTGHGSPVRTLSFTTLIDGIIGKYVLS  206 (541)
T ss_pred             CccceEEEcCCCCEEEecc--ceEEEEEcc--------CceE--------EEEecCCCcceEEEEEEEeccccccceeee
Confidence            8899999999999999886  579999994        3544        4799999999999999887     5554 4


Q ss_pred             EEeCCCeEEEEEcCC
Q 008363          352 YCSADGTVHRFQLTA  366 (568)
Q Consensus       352 s~s~Dg~v~iwd~~~  366 (568)
                      +...+..+.+|-+..
T Consensus       207 sa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  207 SAAAERGITVWVVEK  221 (541)
T ss_pred             ccccccceeEEEEEc
Confidence            455677788887754

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=1.6e-09  Score=113.87  Aligned_cols=185  Identities=16%  Similarity=0.144  Sum_probs=117.8

Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCC---CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE-
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHD---GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI-  250 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l-  250 (568)
                      ..+...+ .+..|+  |+|+.|+..+.+   ..|.+||+.++      ... .+..+.+...+++|+|++      ..| 
T Consensus       200 t~~~~~v-~~p~wS--pDg~~la~~s~~~~~~~l~~~dl~~g------~~~-~l~~~~g~~~~~~~SpDG------~~l~  263 (433)
T PRK04922        200 LRSAEPI-LSPAWS--PDGKKLAYVSFERGRSAIYVQDLATG------QRE-LVASFRGINGAPSFSPDG------RRLA  263 (433)
T ss_pred             ecCCCcc-ccccCC--CCCCEEEEEecCCCCcEEEEEECCCC------CEE-EeccCCCCccCceECCCC------CEEE
Confidence            3445566 889999  899999887743   46999999765      222 222334455678999999      555 


Q ss_pred             EEEcCC--C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCc--EEEEEccccccCCCCCCCCccCcc
Q 008363          251 LTAGHG--G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DGA--MRIVSLLKAAYDVPATGKPFAGTK  324 (568)
Q Consensus       251 as~s~d--~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~--I~lwd~~~~~~~~~~~g~~~~~~~  324 (568)
                      ++.+.+  . |++||+.++ . +..+..+......++|+|||+.|+.++. +|.  |+++|+.        +|+.     
T Consensus       264 ~~~s~~g~~~Iy~~d~~~g-~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~--------~g~~-----  328 (433)
T PRK04922        264 LTLSRDGNPEIYVMDLGSR-Q-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS--------GGSA-----  328 (433)
T ss_pred             EEEeCCCCceEEEEECCCC-C-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC--------CCCe-----
Confidence            454443  3 999999876 2 3345455555578999999999988765 555  5555552        2322     


Q ss_pred             ccceEEEecCCCCEEEEEEecCCCEEEEEeCCC---eEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363          325 QQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADG---TVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNT  397 (568)
Q Consensus       325 ~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~  397 (568)
                          ..+..+......++|+|+|++|+..+.++   .|.+||+.++....-.... ..  .-.++++++..+...+
T Consensus       329 ----~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~-~~--~~p~~spdG~~i~~~s  397 (433)
T PRK04922        329 ----ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGS-LD--ESPSFAPNGSMVLYAT  397 (433)
T ss_pred             ----EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCC-CC--CCceECCCCCEEEEEE
Confidence                12222333345689999999988776543   6999999876554321111 11  1125677887766543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=4.4e-09  Score=110.18  Aligned_cols=187  Identities=13%  Similarity=0.174  Sum_probs=119.0

Q ss_pred             CcCccceEEEEccCCCCCEEEEEeC---CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363          177 GTQSIPLTMEWSTSPPHDYLLAGCH---DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA  253 (568)
Q Consensus       177 h~~~V~~~v~~s~~~~g~~l~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~  253 (568)
                      +...+ .+.+|+  |+|+.|+..+.   +..|.+|++.++..    +.+..+.   +.+..++|+|+|      ..|+..
T Consensus       197 ~~~~~-~~p~wS--PDG~~la~~s~~~g~~~i~i~dl~~G~~----~~l~~~~---~~~~~~~~SPDG------~~La~~  260 (429)
T PRK03629        197 SPQPL-MSPAWS--PDGSKLAYVTFESGRSALVIQTLANGAV----RQVASFP---RHNGAPAFSPDG------SKLAFA  260 (429)
T ss_pred             CCCce-eeeEEc--CCCCEEEEEEecCCCcEEEEEECCCCCe----EEccCCC---CCcCCeEECCCC------CEEEEE
Confidence            34455 889999  89998886542   35799999876621    3333333   335568999999      666643


Q ss_pred             -cCC--C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccce
Q 008363          254 -GHG--G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       254 -s~d--~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                       +.+  . |++||+.++ . +..+..+...+....|+|||+.|+.++. ++...||.+..      .+|..         
T Consensus       261 ~~~~g~~~I~~~d~~tg-~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~------~~g~~---------  323 (429)
T PRK03629        261 LSKTGSLNLYVMDLASG-Q-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI------NGGAP---------  323 (429)
T ss_pred             EcCCCCcEEEEEECCCC-C-EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC------CCCCe---------
Confidence             333  3 999999875 3 2334444556788999999999988776 45555554321      12322         


Q ss_pred             EEEecCCCCEEEEEEecCCCEEEEEeCC---CeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccC
Q 008363          329 HLVNCSSFAIWSVQVSRLTGMVAYCSAD---GTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPL  399 (568)
Q Consensus       329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~D---g~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~  399 (568)
                      ..+..+...+....|+|+|++|+..+.+   ..|.+||+.++....-....   .....++++||..|...+..
T Consensus       324 ~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~---~~~~p~~SpDG~~i~~~s~~  394 (429)
T PRK03629        324 QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF---LDETPSIAPNGTMVIYSSSQ  394 (429)
T ss_pred             EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC---CCCCceECCCCCEEEEEEcC
Confidence            2333344445678999999988877654   35888999877654321111   11233678888887776543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.15  E-value=1.1e-09  Score=101.70  Aligned_cols=202  Identities=13%  Similarity=0.108  Sum_probs=138.7

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT  184 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~  184 (568)
                      ++.|++.+          ..++++..+|.+.+-+...+....                        .+....|.... +.
T Consensus       126 slD~~~~~----------~~i~vs~s~G~~~~v~~t~~~le~------------------------vq~wk~He~E~-Wt  170 (339)
T KOG0280|consen  126 SLDISTSG----------TKIFVSDSRGSISGVYETEMVLEK------------------------VQTWKVHEFEA-WT  170 (339)
T ss_pred             EEEeeccC----------ceEEEEcCCCcEEEEecceeeeee------------------------cccccccceee-ee
Confidence            77888888          678888888988855544432221                        01126777776 88


Q ss_pred             EEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEEC
Q 008363          185 MEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDI  263 (568)
Q Consensus       185 v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~  263 (568)
                      ..|+-.. .+++.+|+.||.+..||++...    ....+..+.|...|.+|.-+|..     |.+|+||+.|- |++||.
T Consensus       171 a~f~~~~-pnlvytGgDD~~l~~~D~R~p~----~~i~~n~kvH~~GV~SI~ss~~~-----~~~I~TGsYDe~i~~~Dt  240 (339)
T KOG0280|consen  171 AKFSDKE-PNLVYTGGDDGSLSCWDIRIPK----TFIWHNSKVHTSGVVSIYSSPPK-----PTYIATGSYDECIRVLDT  240 (339)
T ss_pred             eecccCC-CceEEecCCCceEEEEEecCCc----ceeeecceeeecceEEEecCCCC-----CceEEEeccccceeeeeh
Confidence            8887443 3699999999999999999431    12333456789999999988875     68999999998 999999


Q ss_pred             CCCCcceeeeCCCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEE
Q 008363          264 RDPFRPLWDIHPAPKFIYGLDWLPDPG--CVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSV  341 (568)
Q Consensus       264 ~~~~~~~~~~~~h~~~i~~l~~sp~~~--~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l  341 (568)
                      |+-.+|+..-. -.+.|..+.++|.-.  .|+++ .-+-.+|-+..+..      ++ +    ...+.....|.+-++.-
T Consensus       241 Rnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~C-Mh~G~ki~~~~~~~------~e-~----~~~~~s~~~hdSl~YG~  307 (339)
T KOG0280|consen  241 RNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAAC-MHNGAKILDSSDKV------LE-F----QIVLPSDKIHDSLCYGG  307 (339)
T ss_pred             hcccCccccCc-cccceEEEEecchhhhHHHHHH-HhcCceEEEecccc------cc-h----heeeeccccccceeecc
Confidence            98778885543 357899999999533  33333 33336677764421      22 1    02334666787777777


Q ss_pred             EEecCCCEEEEEe-CCCeEE-EEEc
Q 008363          342 QVSRLTGMVAYCS-ADGTVH-RFQL  364 (568)
Q Consensus       342 ~~sp~~~~l~s~s-~Dg~v~-iwd~  364 (568)
                      .|.....+|+||+ .|..++ +|-.
T Consensus       308 DWd~~~~~lATCsFYDk~~~~~Wl~  332 (339)
T KOG0280|consen  308 DWDSKDSFLATCSFYDKKIRQLWLH  332 (339)
T ss_pred             ccccccceeeeeeccccceeeeeee
Confidence            8855557899987 465544 6644

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.14  E-value=1.3e-08  Score=106.73  Aligned_cols=187  Identities=16%  Similarity=0.171  Sum_probs=122.0

Q ss_pred             ccCCceeeEEEEccCCCCcccccCcccEEEEEeCC---CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363           97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGN---GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML  173 (568)
Q Consensus        97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~d---g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~  173 (568)
                      .+.. .+...+|+|++          ++|+.++.+   ..|++||+.++.....                          
T Consensus       187 ~~~~-~~~~p~~Spdg----------~~la~~~~~~~~~~i~v~d~~~g~~~~~--------------------------  229 (417)
T TIGR02800       187 RSRE-PILSPAWSPDG----------QKLAYVSFESGKPEIYVQDLATGQREKV--------------------------  229 (417)
T ss_pred             cCCC-ceecccCCCCC----------CEEEEEEcCCCCcEEEEEECCCCCEEEe--------------------------
Confidence            3444 45589999999          788877644   4799999988654322                          


Q ss_pred             ccCCcCccceEEEEccCCCCCEEEE-EeCCC--eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363          174 KCGGTQSIPLTMEWSTSPPHDYLLA-GCHDG--TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI  250 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g~~l~s-gs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l  250 (568)
                       ..+...+ .++.|+  |+|+.|+. .+.++  .|.+||+.++      . ...+..+........|+|++      ..|
T Consensus       230 -~~~~~~~-~~~~~s--pDg~~l~~~~~~~~~~~i~~~d~~~~------~-~~~l~~~~~~~~~~~~s~dg------~~l  292 (417)
T TIGR02800       230 -ASFPGMN-GAPAFS--PDGSKLAVSLSKDGNPDIYVMDLDGK------Q-LTRLTNGPGIDTEPSWSPDG------KSI  292 (417)
T ss_pred             -ecCCCCc-cceEEC--CCCCEEEEEECCCCCccEEEEECCCC------C-EEECCCCCCCCCCEEECCCC------CEE
Confidence             2233344 678998  88887764 44444  5888888755      2 23333445555677999998      666


Q ss_pred             EEEcC-CC---EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEccccccCCCCCCCCccCc
Q 008363          251 LTAGH-GG---LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDG---AMRIVSLLKAAYDVPATGKPFAGT  323 (568)
Q Consensus       251 as~s~-d~---v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg---~I~lwd~~~~~~~~~~~g~~~~~~  323 (568)
                      +.++. ++   |.++|+.+..  ...+..+...+..+.|+|++++|+.++.++   .|.+||+..        +..    
T Consensus       293 ~~~s~~~g~~~iy~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~--------~~~----  358 (417)
T TIGR02800       293 AFTSDRGGSPQIYMMDADGGE--VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG--------GGE----  358 (417)
T ss_pred             EEEECCCCCceEEEEECCCCC--EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC--------CCe----
Confidence            65543 32   8888887652  233333455677889999999999988765   788888843        211    


Q ss_pred             cccceEEEecCCCCEEEEEEecCCCEEEEEeCCC
Q 008363          324 KQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADG  357 (568)
Q Consensus       324 ~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg  357 (568)
                           ..+... .......|+|++++|+..+.++
T Consensus       359 -----~~l~~~-~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       359 -----RVLTDT-GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             -----EEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence                 122221 2234568999999888877664

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=1.7e-08  Score=105.33  Aligned_cols=204  Identities=13%  Similarity=0.077  Sum_probs=120.9

Q ss_pred             eEEEEccCCCCcccccCcccEEEEEeCCC--cEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNG--SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg--~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      ..-+|+|+|.       .+.++++...+|  .|.+.++.+++..+.                           ....+..
T Consensus       188 ~sP~wSPDG~-------~~~~~y~S~~~g~~~I~~~~l~~g~~~~l---------------------------t~~~g~~  233 (428)
T PRK01029        188 ITPTWMHIGS-------GFPYLYVSYKLGVPKIFLGSLENPAGKKI---------------------------LALQGNQ  233 (428)
T ss_pred             ccceEccCCC-------ceEEEEEEccCCCceEEEEECCCCCceEe---------------------------ecCCCCc
Confidence            3779999983       001333444444  477778877653322                           1122233


Q ss_pred             ceEEEEccCCCCCEEEEEeC-----CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc-C
Q 008363          182 PLTMEWSTSPPHDYLLAGCH-----DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG-H  255 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~-----Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s-~  255 (568)
                       ...+|+  |||+.|+..+.     |..+.+|++..+..   ..+......+.+.....+|+|+|      ..|+..+ .
T Consensus       234 -~~p~wS--PDG~~Laf~s~~~g~~di~~~~~~~~~g~~---g~~~~lt~~~~~~~~~p~wSPDG------~~Laf~s~~  301 (428)
T PRK01029        234 -LMPTFS--PRKKLLAFISDRYGNPDLFIQSFSLETGAI---GKPRRLLNEAFGTQGNPSFSPDG------TRLVFVSNK  301 (428)
T ss_pred             -cceEEC--CCCCEEEEEECCCCCcceeEEEeecccCCC---CcceEeecCCCCCcCCeEECCCC------CEEEEEECC
Confidence             567899  99988886553     33345567654311   12333332333445678999999      6666554 3


Q ss_pred             CC---EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEccccccCCCCCCCCccCccccceE
Q 008363          256 GG---LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDD---GAMRIVSLLKAAYDVPATGKPFAGTKQQGLH  329 (568)
Q Consensus       256 d~---v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d---g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~  329 (568)
                      ++   |.++++.........+..+...+....|+|||+.|+..+.+   ..|++||+..        |+.         .
T Consensus       302 ~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~--------g~~---------~  364 (428)
T PRK01029        302 DGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT--------GRD---------Y  364 (428)
T ss_pred             CCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC--------CCe---------E
Confidence            44   44445542212233444445567789999999999877553   4689999843        433         2


Q ss_pred             EEecCCCCEEEEEEecCCCEEEEEeC---CCeEEEEEcCCCeee
Q 008363          330 LVNCSSFAIWSVQVSRLTGMVAYCSA---DGTVHRFQLTAKAVE  370 (568)
Q Consensus       330 ~~~~h~~~V~~l~~sp~~~~l~s~s~---Dg~v~iwd~~~~~~~  370 (568)
                      .+......+....|+|+|++|+..+.   ...|++|++.++...
T Consensus       365 ~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~  408 (428)
T PRK01029        365 QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR  408 (428)
T ss_pred             EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence            33323345677899999988875543   356888888765543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.12  E-value=2.1e-08  Score=105.13  Aligned_cols=185  Identities=14%  Similarity=0.136  Sum_probs=120.7

Q ss_pred             CCcCccceEEEEccCCCCCEEEEEeCC---CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE-
Q 008363          176 GGTQSIPLTMEWSTSPPHDYLLAGCHD---GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL-  251 (568)
Q Consensus       176 ~h~~~V~~~v~~s~~~~g~~l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la-  251 (568)
                      .+...+ .+.+|+  |+|++|+.++.+   ..|.+||+.++      .. ..+..+.+.+.+++|+|++      +.|+ 
T Consensus       187 ~~~~~~-~~p~~S--pdg~~la~~~~~~~~~~i~v~d~~~g------~~-~~~~~~~~~~~~~~~spDg------~~l~~  250 (417)
T TIGR02800       187 RSREPI-LSPAWS--PDGQKLAYVSFESGKPEIYVQDLATG------QR-EKVASFPGMNGAPAFSPDG------SKLAV  250 (417)
T ss_pred             cCCCce-ecccCC--CCCCEEEEEEcCCCCcEEEEEECCCC------CE-EEeecCCCCccceEECCCC------CEEEE
Confidence            344455 788899  899999887754   47999999865      22 2233455667789999998      5554 


Q ss_pred             EEcCC--C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEEccccccCCCCCCCCccCccc
Q 008363          252 TAGHG--G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DG--AMRIVSLLKAAYDVPATGKPFAGTKQ  325 (568)
Q Consensus       252 s~s~d--~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg--~I~lwd~~~~~~~~~~~g~~~~~~~~  325 (568)
                      +.+.+  . |++||+.++  ....+..+........|+|+|+.|+.++. ++  .|+++|+..        ++.      
T Consensus       251 ~~~~~~~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~--------~~~------  314 (417)
T TIGR02800       251 SLSKDGNPDIYVMDLDGK--QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG--------GEV------  314 (417)
T ss_pred             EECCCCCccEEEEECCCC--CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC--------CCE------
Confidence            54443  3 999999865  23334444444567899999999887765 33  577777632        222      


Q ss_pred             cceEEEecCCCCEEEEEEecCCCEEEEEeCCC---eEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEccc
Q 008363          326 QGLHLVNCSSFAIWSVQVSRLTGMVAYCSADG---TVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTP  398 (568)
Q Consensus       326 ~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~  398 (568)
                         ..+..+...+..+.|+|++++|+.++.++   .|.+||+.++......... .  ....++++++..|.....
T Consensus       315 ---~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~--~~~p~~spdg~~l~~~~~  384 (417)
T TIGR02800       315 ---RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTG-L--DESPSFAPNGRMILYATT  384 (417)
T ss_pred             ---EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCC-C--CCCceECCCCCEEEEEEe
Confidence               23444555667889999999999988876   7999998875443221111 1  112256777777665443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.10  E-value=1.5e-09  Score=102.82  Aligned_cols=233  Identities=19%  Similarity=0.252  Sum_probs=148.4

Q ss_pred             CceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc-----eeeEEeccCCccCCCCceEEEeecceecccc
Q 008363          100 GKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR-----TMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus       100 ~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~-----~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      ..++.+|.|...|          .+||+|..+|.|.++.-....     ....++.|.             |.+..+.. 
T Consensus        25 adiis~vef~~~G----------e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshe-------------pEFDYLkS-   80 (433)
T KOG1354|consen   25 ADIISAVEFDHYG----------ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHE-------------PEFDYLKS-   80 (433)
T ss_pred             hcceeeEEeeccc----------ceEeecCCCCeEEEeecccccccceeeeeeeeccC-------------cccchhhh-
Confidence            3477799999999          799999999999999755421     111222221             11111111 


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCC-----------------------------CCceeEEe
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSI-----------------------------DSRPLLCF  225 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~-----------------------------~~~~~~~~  225 (568)
                      ..-...| ..+.|.+..+...++..+.|.+|++|.+.......                             ...|.+.+
T Consensus        81 leieEKi-nkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~  159 (433)
T KOG1354|consen   81 LEIEEKI-NKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVY  159 (433)
T ss_pred             hhhhhhh-hhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeec
Confidence            1123445 78899966566688888899999999987543211                             01122322


Q ss_pred             -eCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcce--eeeCCC-----CCCeEEEEEcCC-CCEEEEEe
Q 008363          226 -SADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPL--WDIHPA-----PKFIYGLDWLPD-PGCVILSF  296 (568)
Q Consensus       226 -~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~--~~~~~h-----~~~i~~l~~sp~-~~~l~s~~  296 (568)
                       .+|.--|++|.++.+.      ..++|+.+=.|-+|.+.-..+..  ..+.++     ..-|++..|+|. ...++-++
T Consensus       160 aNaHtyhiNSIS~NsD~------Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS  233 (433)
T KOG1354|consen  160 ANAHTYHINSISVNSDK------ETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS  233 (433)
T ss_pred             cccceeEeeeeeecCcc------ceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec
Confidence             3688889999999998      78887766569999987654433  223333     345788999995 56777788


Q ss_pred             CCCcEEEEEccccccCCCCCCCCccCcc-ccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          297 DDGAMRIVSLLKAAYDVPATGKPFAGTK-QQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       297 ~dg~I~lwd~~~~~~~~~~~g~~~~~~~-~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      ..|+|+|-|+|..+.=. ...+++..+. .....-+..--..|..+.|+..|+||++-+. -+|++||+.
T Consensus       234 SKGtIrLcDmR~~aLCd-~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~n  301 (433)
T KOG1354|consen  234 SKGTIRLCDMRQSALCD-AHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLN  301 (433)
T ss_pred             CCCcEEEeechhhhhhc-chhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecc
Confidence            89999999998432100 0001100000 0001122233457889999999999998764 589999994

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.08  E-value=1.4e-08  Score=95.76  Aligned_cols=221  Identities=14%  Similarity=0.177  Sum_probs=141.9

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccC---------C--------------------
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSS---------M--------------------  153 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~---------~--------------------  153 (568)
                      +..++|||+|.         .+|.+...|-.|.||.+.+..+...-.+..         +                    
T Consensus        94 ls~~~WSPdgr---------hiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~  164 (447)
T KOG4497|consen   94 LSSISWSPDGR---------HILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS  164 (447)
T ss_pred             ceeeeECCCcc---------eEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence            44999999997         788899999999999998854432211111         1                    


Q ss_pred             -------------------cc-CCCCceEEEeecceeccc-ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccC
Q 008363          154 -------------------KE-GTDPRFVKLEPVFRCSML-KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVA  212 (568)
Q Consensus       154 -------------------~~-~~~~~~v~~~~~~~~~~~-~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~  212 (568)
                                         +. ..++..+.+|+..---+. ...-.-.+ ..++|+  |.+++|++|+.|+.++|.+--+
T Consensus       165 c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~-k~v~ws--P~~qflavGsyD~~lrvlnh~t  241 (447)
T KOG4497|consen  165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGL-KFVEWS--PCNQFLAVGSYDQMLRVLNHFT  241 (447)
T ss_pred             hHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccce-eEEEec--cccceEEeeccchhhhhhceee
Confidence                               00 123444555544321111 11222455 788999  6688999999999998754221


Q ss_pred             CCCC----------------------------------------------------CCCce--eEEee------CCCCCe
Q 008363          213 SDSS----------------------------------------------------IDSRP--LLCFS------ADTLPI  232 (568)
Q Consensus       213 ~~~~----------------------------------------------------~~~~~--~~~~~------~h~~~V  232 (568)
                      =+..                                                    ....+  +..++      .-.-.+
T Consensus       242 Wk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~  321 (447)
T KOG4497|consen  242 WKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGA  321 (447)
T ss_pred             eeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccc
Confidence            0000                                                    00000  01111      112236


Q ss_pred             eEEEEccCCCCCCCCcEEEEEcCC--C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccc
Q 008363          233 RAVSWAPAESDSDSANVILTAGHG--G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKA  309 (568)
Q Consensus       233 ~~v~~~p~~~~~~~~~~las~s~d--~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~  309 (568)
                      .-++|+++.      .++||-.+.  + +-+||++..  .+..+--...+|....|+|....|+.+.....+++|...  
T Consensus       322 g~lafs~Ds------~y~aTrnd~~PnalW~Wdlq~l--~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~ps--  391 (447)
T KOG4497|consen  322 GKLAFSCDS------TYAATRNDKYPNALWLWDLQNL--KLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPS--  391 (447)
T ss_pred             ceeeecCCc------eEEeeecCCCCceEEEEechhh--hhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCC--
Confidence            678999998      788877665  4 999999965  333333446779999999999999988888889999872  


Q ss_pred             ccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 008363          310 AYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVH  360 (568)
Q Consensus       310 ~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~  360 (568)
                             |-..        -...+....|..++|.-.|..++.++.|....
T Consensus       392 -------g~~~--------V~vP~~GF~i~~l~W~~~g~~i~l~~kDafc~  427 (447)
T KOG4497|consen  392 -------GPRV--------VGVPKKGFNIQKLQWLQPGEFIVLCGKDAFCV  427 (447)
T ss_pred             -------CceE--------EecCCCCceeeeEEecCCCcEEEEEcCCceEE
Confidence                   3111        12233447899999999999999999886543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.08  E-value=1.9e-09  Score=101.41  Aligned_cols=184  Identities=15%  Similarity=0.247  Sum_probs=125.6

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      ++ -+.|..+..         .+|.....|+.|.+|++...+-...+                          ......+
T Consensus        51 i~-yieW~ads~---------~ilC~~yk~~~vqvwsl~Qpew~ckI--------------------------deg~agl   94 (447)
T KOG4497|consen   51 IV-YIEWKADSC---------HILCVAYKDPKVQVWSLVQPEWYCKI--------------------------DEGQAGL   94 (447)
T ss_pred             hh-heeeeccce---------eeeeeeeccceEEEEEeecceeEEEe--------------------------ccCCCcc
Confidence            44 788988875         67888889999999999886665554                          4445556


Q ss_pred             ceEEEEccCCCCCE-EEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-C--
Q 008363          182 PLTMEWSTSPPHDY-LLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-G--  257 (568)
Q Consensus       182 ~~~v~~s~~~~g~~-l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-~--  257 (568)
                       .++.|+  |+|+. |.+...|-.|.+|.+.+.      .... +.--...+..++|+|+|      ++.+.++.. .  
T Consensus        95 -s~~~WS--PdgrhiL~tseF~lriTVWSL~t~------~~~~-~~~pK~~~kg~~f~~dg------~f~ai~sRrDCkd  158 (447)
T KOG4497|consen   95 -SSISWS--PDGRHILLTSEFDLRITVWSLNTQ------KGYL-LPHPKTNVKGYAFHPDG------QFCAILSRRDCKD  158 (447)
T ss_pred             -eeeeEC--CCcceEeeeecceeEEEEEEeccc------eeEE-ecccccCceeEEECCCC------ceeeeeecccHHH
Confidence             889999  88865 556667889999999876      2222 22224456889999999      787777653 1  


Q ss_pred             -EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCC-
Q 008363          258 -LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS-  335 (568)
Q Consensus       258 -v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~-  335 (568)
                       +.|..-... ..+..+...+-..+.+.|+|||..|++         ||.---                  ...+..|. 
T Consensus       159 yv~i~~c~~W-~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Le------------------ykv~aYe~~  210 (447)
T KOG4497|consen  159 YVQISSCKAW-ILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLE------------------YKVYAYERG  210 (447)
T ss_pred             HHHHHhhHHH-HHHHhcCCCcccccCceECCCCcEEEE---------ecchhh------------------heeeeeeec
Confidence             333222222 333444444455689999999987664         553110                  01112222 


Q ss_pred             CCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          336 FAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       336 ~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      -.+..+.|+|.+++|+.|+.|+.++|.+--
T Consensus       211 lG~k~v~wsP~~qflavGsyD~~lrvlnh~  240 (447)
T KOG4497|consen  211 LGLKFVEWSPCNQFLAVGSYDQMLRVLNHF  240 (447)
T ss_pred             cceeEEEeccccceEEeeccchhhhhhcee
Confidence            467789999999999999999999997653

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.08  E-value=7.1e-10  Score=114.18  Aligned_cols=222  Identities=12%  Similarity=0.177  Sum_probs=156.6

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeeccee
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRC  170 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~  170 (568)
                      .-....+|..+++ ++.|.|+.+         .+||+++.|-.|..||+.......-                .|.    
T Consensus       106 Ief~lhghsrait-d~n~~~q~p---------dVlatcsvdt~vh~wd~rSp~~p~y----------------s~~----  155 (1081)
T KOG0309|consen  106 IEFVLHGHSRAIT-DINFNPQHP---------DVLATCSVDTYVHAWDMRSPHRPFY----------------STS----  155 (1081)
T ss_pred             eEEEEecCcccee-ccccCCCCC---------cceeeccccccceeeeccCCCccee----------------eee----
Confidence            3445678998666 999999998         8999999999999999998443211                111    


Q ss_pred             cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363          171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI  250 (568)
Q Consensus       171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l  250 (568)
                          .-|++.  ..|.|+  ...-.+++.+....|.+||++.+     ..++..+++|...|+.++|+..-     ...+
T Consensus       156 ----~w~s~a--sqVkwn--yk~p~vlasshg~~i~vwd~r~g-----s~pl~s~K~~vs~vn~~~fnr~~-----~s~~  217 (1081)
T KOG0309|consen  156 ----SWRSAA--SQVKWN--YKDPNVLASSHGNDIFVWDLRKG-----STPLCSLKGHVSSVNSIDFNRFK-----YSEI  217 (1081)
T ss_pred             ----cccccC--ceeeec--ccCcchhhhccCCceEEEeccCC-----CcceEEecccceeeehHHHhhhh-----hhhh
Confidence                122222  678998  33345555666778999999976     47888999999999999998765     2578


Q ss_pred             EEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEE--eCCCcEEEEEccccccCCCCCCCCccCccccc
Q 008363          251 LTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS--FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQG  327 (568)
Q Consensus       251 as~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~--~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~  327 (568)
                      .+++.|+ |++||.......-.....-..+|..-+|.|-|...++-  -.+..+.+++.++....      .-..+..++
T Consensus       218 ~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e------~n~~~~~~p  291 (1081)
T KOG0309|consen  218 MSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLE------WNVFDLNTP  291 (1081)
T ss_pred             cccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhh------hccccCCcc
Confidence            8888888 99999886532222222345677888888876654443  23446666666553311      111223477


Q ss_pred             eEEEecCCCCEEEEEEecCC----------CEEEEEeCCCeEEEEEcCC
Q 008363          328 LHLVNCSSFAIWSVQVSRLT----------GMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       328 l~~~~~h~~~V~~l~~sp~~----------~~l~s~s~Dg~v~iwd~~~  366 (568)
                      ++.|.||...|..+.|-..+          -.|+|-+.|..+++|-+..
T Consensus       292 Vh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  292 VHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             eeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            89999999988776665332          3799999999999998853

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.07  E-value=1.1e-07  Score=96.94  Aligned_cols=245  Identities=14%  Similarity=0.150  Sum_probs=142.3

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT  184 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~  184 (568)
                      .+.|+|++          +++++++.||.|.++|+.+.+.+.++...                          ..  +..
T Consensus        41 ~~~~s~Dg----------r~~yv~~rdg~vsviD~~~~~~v~~i~~G--------------------------~~--~~~   82 (369)
T PF02239_consen   41 GLKFSPDG----------RYLYVANRDGTVSVIDLATGKVVATIKVG--------------------------GN--PRG   82 (369)
T ss_dssp             EEE-TT-S----------SEEEEEETTSEEEEEETTSSSEEEEEE-S--------------------------SE--EEE
T ss_pred             EEEecCCC----------CEEEEEcCCCeEEEEECCcccEEEEEecC--------------------------CC--cce
Confidence            57899999          78999999999999999999888776221                          11  377


Q ss_pred             EEEccCCCCCEEEEEe-CCCeEEEEEccCCCCCCCCceeEEeeCC-------CCCeeEEEEccCCCCCCCCcEEEEEcCC
Q 008363          185 MEWSTSPPHDYLLAGC-HDGTVALWKFVASDSSIDSRPLLCFSAD-------TLPIRAVSWAPAESDSDSANVILTAGHG  256 (568)
Q Consensus       185 v~~s~~~~g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-------~~~V~~v~~~p~~~~~~~~~~las~s~d  256 (568)
                      ++++  ++|+++++++ .++.|.++|..+.      +++..+...       ...+.+|..+|..     +.++++.-+.
T Consensus        83 i~~s--~DG~~~~v~n~~~~~v~v~D~~tl------e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~-----~~fVv~lkd~  149 (369)
T PF02239_consen   83 IAVS--PDGKYVYVANYEPGTVSVIDAETL------EPVKTIPTGGMPVDGPESRVAAIVASPGR-----PEFVVNLKDT  149 (369)
T ss_dssp             EEE----TTTEEEEEEEETTEEEEEETTT--------EEEEEE--EE-TTTS---EEEEEE-SSS-----SEEEEEETTT
T ss_pred             EEEc--CCCCEEEEEecCCCceeEeccccc------cceeecccccccccccCCCceeEEecCCC-----CEEEEEEccC
Confidence            8888  8999888775 6899999998866      677766432       3467888888887     2344444444


Q ss_pred             C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccC-------CCCCCC---------
Q 008363          257 G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYD-------VPATGK---------  318 (568)
Q Consensus       257 ~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~-------~~~~g~---------  318 (568)
                      + |.+.|......................|+|++++++++. ..+.|-++|......-       .|..+.         
T Consensus       150 ~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~  229 (369)
T PF02239_consen  150 GEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGF  229 (369)
T ss_dssp             TEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTT
T ss_pred             CeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCc
Confidence            5 888898876333222223345578899999999988764 3567777776433110       000000         


Q ss_pred             -----------C------------ccCccccceEEEecCCCCEEEEEEecCCCEEEEE----eCCCeEEEEEcCCCeeec
Q 008363          319 -----------P------------FAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYC----SADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       319 -----------~------------~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~----s~Dg~v~iwd~~~~~~~~  371 (568)
                                 .            ......+.+..+.....+ .-+..+|++++|.+.    ...++|.++|..+.+...
T Consensus       230 g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~  308 (369)
T PF02239_consen  230 GPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK  308 (369)
T ss_dssp             EEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE
T ss_pred             ceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeE
Confidence                       0            000112233344444444 567889999999888    455899999999876554


Q ss_pred             cCCCCCcceeeeecccCCCCceEEcccCCC
Q 008363          372 DHSRNRPMHFLCGSVTEDESAITVNTPLDN  401 (568)
Q Consensus       372 ~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~  401 (568)
                      ..............++.+|..+-+..+..+
T Consensus       309 ~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~  338 (369)
T PF02239_consen  309 TITPGPGKRVVHMEFNPDGKEVWVSVWDGN  338 (369)
T ss_dssp             -HHHHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred             EEeccCCCcEeccEECCCCCEEEEEEecCC
Confidence            422111111344468889988777655444

...

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.04  E-value=1.4e-08  Score=96.38  Aligned_cols=104  Identities=14%  Similarity=0.359  Sum_probs=85.9

Q ss_pred             EEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeC
Q 008363          196 LLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIH  274 (568)
Q Consensus       196 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~  274 (568)
                      ...|...|.|.+-.+...    ...++..+.+|.+.+.+++|.+..      .++.+|..|. |.+||+.........+.
T Consensus       168 ~fvGd~~gqvt~lr~~~~----~~~~i~~~~~h~~~~~~l~Wd~~~------~~LfSg~~d~~vi~wdigg~~g~~~el~  237 (404)
T KOG1409|consen  168 AFVGDHSGQITMLKLEQN----GCQLITTFNGHTGEVTCLKWDPGQ------RLLFSGASDHSVIMWDIGGRKGTAYELQ  237 (404)
T ss_pred             EEecccccceEEEEEeec----CCceEEEEcCcccceEEEEEcCCC------cEEEeccccCceEEEeccCCcceeeeec
Confidence            334555566666555544    237888999999999999999998      8999999998 99999987755667888


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccc
Q 008363          275 PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKA  309 (568)
Q Consensus       275 ~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~  309 (568)
                      +|...|..+...+.-+.|++++.||.|.+|+....
T Consensus       238 gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  238 GHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             cchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            99999999999998999999999999999997543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.02  E-value=1.6e-09  Score=121.29  Aligned_cols=188  Identities=13%  Similarity=0.182  Sum_probs=145.9

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      -+.++.-+|..          -+.++|+.||.|++|....++.+..+..                        .|. ..|
T Consensus      2210 ~v~r~~sHp~~----------~~Yltgs~dgsv~~~~w~~~~~v~~~rt------------------------~g~-s~v 2254 (2439)
T KOG1064|consen 2210 NVRRMTSHPSD----------PYYLTGSQDGSVRMFEWGHGQQVVCFRT------------------------AGN-SRV 2254 (2439)
T ss_pred             ceeeecCCCCC----------ceEEecCCCceEEEEeccCCCeEEEeec------------------------cCc-chh
Confidence            44467777777          5889999999999999998877755421                        333 666


Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC---CC-
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH---GG-  257 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~---d~-  257 (568)
                       +.+.|+  ..|+.+..+..||.+.+|.+. .      ++....+.|.....++.|-..        ++++++.   ++ 
T Consensus      2255 -tr~~f~--~qGnk~~i~d~dg~l~l~q~~-p------k~~~s~qchnk~~~Df~Fi~s--------~~~tag~s~d~~n 2316 (2439)
T KOG1064|consen 2255 -TRSRFN--HQGNKFGIVDGDGDLSLWQAS-P------KPYTSWQCHNKALSDFRFIGS--------LLATAGRSSDNRN 2316 (2439)
T ss_pred             -hhhhhc--ccCCceeeeccCCceeecccC-C------cceeccccCCccccceeeeeh--------hhhccccCCCCCc
Confidence             888888  889999999999999999987 2      678888899999999988763        5666644   35 


Q ss_pred             EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCC
Q 008363          258 LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFA  337 (568)
Q Consensus       258 v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~  337 (568)
                      +.+||..-+...-..-..|.+.++++++-|..+.|++||.+|.|++||++...                .+++++.    
T Consensus      2317 ~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq----------------l~h~~~~---- 2376 (2439)
T KOG1064|consen 2317 VCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ----------------LRHTFQA---- 2376 (2439)
T ss_pred             ccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH----------------HHHHhhh----
Confidence            99999875532222226889999999999999999999999999999996411                1123322    


Q ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363          338 IWSVQVSRLTGMVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       338 V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~  368 (568)
                           ++ ...++++++..|.++||++....
T Consensus      2377 -----~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2377 -----LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             -----hh-hhheeeccCcccceEEEEccccc
Confidence                 44 46789999999999999996543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.02  E-value=1e-07  Score=100.32  Aligned_cols=195  Identities=13%  Similarity=0.132  Sum_probs=120.2

Q ss_pred             ccCCceeeEEEEccCCCCcccccCcccEEEEEeCC---CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363           97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGN---GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML  173 (568)
Q Consensus        97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~d---g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~  173 (568)
                      .+.. .+...+|+|++          +.|+..+.+   ..|.+|++.+++....                          
T Consensus       196 ~~~~-~~~~p~wSpDG----------~~la~~s~~~~~~~l~~~~l~~g~~~~l--------------------------  238 (430)
T PRK00178        196 QSRE-PILSPRWSPDG----------KRIAYVSFEQKRPRIFVQNLDTGRREQI--------------------------  238 (430)
T ss_pred             cCCC-ceeeeeECCCC----------CEEEEEEcCCCCCEEEEEECCCCCEEEc--------------------------
Confidence            4444 44589999999          677766543   3688999988654321                          


Q ss_pred             ccCCcCccceEEEEccCCCCCEEE-EEeCCC--eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363          174 KCGGTQSIPLTMEWSTSPPHDYLL-AGCHDG--TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI  250 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g~~l~-sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l  250 (568)
                       ......+ ....|+  |+|+.|+ +.+.+|  .|.+||+.++      . ...+..+........|+|++      ..|
T Consensus       239 -~~~~g~~-~~~~~S--pDG~~la~~~~~~g~~~Iy~~d~~~~------~-~~~lt~~~~~~~~~~~spDg------~~i  301 (430)
T PRK00178        239 -TNFEGLN-GAPAWS--PDGSKLAFVLSKDGNPEIYVMDLASR------Q-LSRVTNHPAIDTEPFWGKDG------RTL  301 (430)
T ss_pred             -cCCCCCc-CCeEEC--CCCCEEEEEEccCCCceEEEEECCCC------C-eEEcccCCCCcCCeEECCCC------CEE
Confidence             1112223 568899  8898877 444555  5777888765      2 23344455556778999998      555


Q ss_pred             EEEcC-CC---EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEEccccccCCCCCCCCccCc
Q 008363          251 LTAGH-GG---LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DG--AMRIVSLLKAAYDVPATGKPFAGT  323 (568)
Q Consensus       251 as~s~-d~---v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg--~I~lwd~~~~~~~~~~~g~~~~~~  323 (568)
                      +..+. ++   |+++|+.++......+.  ........|+|+|++|+..+. ++  .|.+||+..        |+.    
T Consensus       302 ~f~s~~~g~~~iy~~d~~~g~~~~lt~~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t--------g~~----  367 (430)
T PRK00178        302 YFTSDRGGKPQIYKVNVNGGRAERVTFV--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR--------GSV----  367 (430)
T ss_pred             EEEECCCCCceEEEEECCCCCEEEeecC--CCCccceEECCCCCEEEEEEccCCceEEEEEECCC--------CCE----
Confidence            54443 32   88888876632222222  223356789999999988765 33  477888842        322    


Q ss_pred             cccceEEEecCCCCEEEEEEecCCCEEEEEeCC-C--eEEEEEcC
Q 008363          324 KQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD-G--TVHRFQLT  365 (568)
Q Consensus       324 ~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D-g--~v~iwd~~  365 (568)
                           ..+. +........|+|+|++|+..+.+ |  .|.++++.
T Consensus       368 -----~~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        368 -----RILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN  406 (430)
T ss_pred             -----EEcc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence                 1222 11122356899999888877654 3  45566653

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.00  E-value=4.2e-08  Score=98.90  Aligned_cols=132  Identities=13%  Similarity=0.192  Sum_probs=95.7

Q ss_pred             eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE-cCC-C-EEEEECCCCCcceeeeCCCCCCe
Q 008363          204 TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA-GHG-G-LKFWDIRDPFRPLWDIHPAPKFI  280 (568)
Q Consensus       204 ~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~-s~d-~-v~lwD~~~~~~~~~~~~~h~~~i  280 (568)
                      ++++.++...      .+...+ ...++|+++.|+|++      .-|+.+ |.- . +.|+|++.  .++..+.  .++=
T Consensus       252 ~Lyll~t~g~------s~~V~L-~k~GPVhdv~W~~s~------~EF~VvyGfMPAkvtifnlr~--~~v~df~--egpR  314 (566)
T KOG2315|consen  252 TLYLLATQGE------SVSVPL-LKEGPVHDVTWSPSG------REFAVVYGFMPAKVTIFNLRG--KPVFDFP--EGPR  314 (566)
T ss_pred             eEEEEEecCc------eEEEec-CCCCCceEEEECCCC------CEEEEEEecccceEEEEcCCC--CEeEeCC--CCCc
Confidence            5777776622      233333 347999999999998      455444 443 4 99999995  5776665  5666


Q ss_pred             EEEEEcCCCCEEEEEeC---CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeC--
Q 008363          281 YGLDWLPDPGCVILSFD---DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSA--  355 (568)
Q Consensus       281 ~~l~~sp~~~~l~s~~~---dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~--  355 (568)
                      +++-|+|.|++|+.+|.   -|.|-|||+.+.                +++..+.....  +-+.|+|+|.+|+|++.  
T Consensus       315 N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~----------------K~i~~~~a~~t--t~~eW~PdGe~flTATTaP  376 (566)
T KOG2315|consen  315 NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR----------------KLIAKFKAANT--TVFEWSPDGEYFLTATTAP  376 (566)
T ss_pred             cceEECCCCCEEEEeecCCCCCceEEEeccch----------------hhccccccCCc--eEEEEcCCCcEEEEEeccc
Confidence            89999999999999876   688999999542                23345443332  45789999999999874  


Q ss_pred             ----CCeEEEEEcCCCeee
Q 008363          356 ----DGTVHRFQLTAKAVE  370 (568)
Q Consensus       356 ----Dg~v~iwd~~~~~~~  370 (568)
                          |+.++||++....+.
T Consensus       377 RlrvdNg~KiwhytG~~l~  395 (566)
T KOG2315|consen  377 RLRVDNGIKIWHYTGSLLH  395 (566)
T ss_pred             cEEecCCeEEEEecCceee
Confidence                789999999765544

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.99  E-value=4e-09  Score=113.11  Aligned_cols=142  Identities=16%  Similarity=0.155  Sum_probs=116.3

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD  202 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D  202 (568)
                      -++++|+.-+.|.+|+......-..                          +.||.+.+ +++.|+  .+|.++++.|.|
T Consensus       146 ~~i~~gsv~~~iivW~~~~dn~p~~--------------------------l~GHeG~i-F~i~~s--~dg~~i~s~SdD  196 (967)
T KOG0974|consen  146 LYIASGSVFGEIIVWKPHEDNKPIR--------------------------LKGHEGSI-FSIVTS--LDGRYIASVSDD  196 (967)
T ss_pred             EEEEeccccccEEEEeccccCCcce--------------------------ecccCCce-EEEEEc--cCCcEEEEEecC
Confidence            6899999999999999873111111                          18999998 999999  899999999999


Q ss_pred             CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCC-Ce
Q 008363          203 GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPK-FI  280 (568)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~-~i  280 (568)
                      .++++|++.+...     .....-+|+..|..+.|.|.        .++|++.|. .++|+...  ..+..+.+|.+ .|
T Consensus       197 RsiRlW~i~s~~~-----~~~~~fgHsaRvw~~~~~~n--------~i~t~gedctcrvW~~~~--~~l~~y~~h~g~~i  261 (967)
T KOG0974|consen  197 RSIRLWPIDSREV-----LGCTGFGHSARVWACCFLPN--------RIITVGEDCTCRVWGVNG--TQLEVYDEHSGKGI  261 (967)
T ss_pred             cceeeeecccccc-----cCcccccccceeEEEEeccc--------eeEEeccceEEEEEeccc--ceehhhhhhhhcce
Confidence            9999999998733     11244489999999999986        799999998 99997764  34446777754 58


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363          281 YGLDWLPDPGCVILSFDDGAMRIVSLLK  308 (568)
Q Consensus       281 ~~l~~sp~~~~l~s~~~dg~I~lwd~~~  308 (568)
                      ..++..++...+++++.|+.+++||+..
T Consensus       262 w~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  262 WKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            9999999999999999999999999743

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.99  E-value=3.5e-08  Score=107.50  Aligned_cols=203  Identities=10%  Similarity=0.079  Sum_probs=132.0

Q ss_pred             ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCC-CCCceeEEeeCCCCCeeEEEEccCCCCCCCCc
Q 008363          170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSS-IDSRPLLCFSADTLPIRAVSWAPAESDSDSAN  248 (568)
Q Consensus       170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~-~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~  248 (568)
                      ...++..|...+ ..++-++ +.+.++++||.||+|++|+.+.-... ...+...++..-.+.+.++.+.+.+      +
T Consensus      1040 lVAhL~Ehs~~v-~k~a~s~-~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~------~ 1111 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAV-IKLAVSS-EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG------D 1111 (1431)
T ss_pred             Eeehhhhccccc-cceeecC-CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC------C
Confidence            344557888888 6777652 23489999999999999998744222 2234444555457889999999999      8


Q ss_pred             EEEEEcCCC-EEEEECCCCC------cceeeeCCC-CCCe-EEEEEcC-CCC-EEEEEeCCCcEEEEEccccccCCCCCC
Q 008363          249 VILTAGHGG-LKFWDIRDPF------RPLWDIHPA-PKFI-YGLDWLP-DPG-CVILSFDDGAMRIVSLLKAAYDVPATG  317 (568)
Q Consensus       249 ~las~s~d~-v~lwD~~~~~------~~~~~~~~h-~~~i-~~l~~sp-~~~-~l~s~~~dg~I~lwd~~~~~~~~~~~g  317 (568)
                      .||.++.|| |++.++....      .+......+ .+.+ ..-+|.. .+. .|+.+..-+.|..||++....-     
T Consensus      1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~----- 1186 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA----- 1186 (1431)
T ss_pred             eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH-----
Confidence            999999999 9999987621      111222222 2223 3333433 233 6777888899999999763310     


Q ss_pred             CCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec---cCCCCCcceeeeecccCCCCceE
Q 008363          318 KPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK---DHSRNRPMHFLCGSVTEDESAIT  394 (568)
Q Consensus       318 ~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~---~~~~~~~~~~~~~s~~~~~~~i~  394 (568)
                              .. .......+.|++++.+|.+.++++|+..|.+.+||++-+....   .+...+..++.+.-+.+.+..++
T Consensus      1187 --------w~-lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~v 1257 (1431)
T KOG1240|consen 1187 --------WR-LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSV 1257 (1431)
T ss_pred             --------Hh-hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEE
Confidence                    00 1223345789999999999999999999999999997554332   12233344444444444334433

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.99  E-value=1.5e-08  Score=96.23  Aligned_cols=214  Identities=14%  Similarity=0.144  Sum_probs=152.6

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC-CceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML  173 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~  173 (568)
                      ..||.. .+++...-|..          .-+++.+.|.+++||--.+ ++.-..++                        
T Consensus        20 ~eG~~d-~vn~~~l~~~e----------~gv~~~s~drtvrv~lkrds~q~wpsI~------------------------   64 (404)
T KOG1409|consen   20 IEGSQD-DVNAAILIPKE----------EGVISVSEDRTVRVWLKRDSGQYWPSIY------------------------   64 (404)
T ss_pred             hcCchh-hhhhheeccCC----------CCeEEccccceeeeEEeccccccCchhh------------------------
Confidence            346766 55476677766          3588999999999995433 44332220                        


Q ss_pred             ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363          174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA  253 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~  253 (568)
                       ..-... |+++.+.  ++...|++|-..|++.-+.+...-  ......+.+..|...|..+-|+-..      .+++++
T Consensus        65 -~~mP~~-~~~~~y~--~e~~~L~vg~~ngtvtefs~sedf--nkm~~~r~~~~h~~~v~~~if~~~~------e~V~s~  132 (404)
T KOG1409|consen   65 -HYMPSP-CSAMEYV--SESRRLYVGQDNGTVTEFALSEDF--NKMTFLKDYLAHQARVSAIVFSLTH------EWVLST  132 (404)
T ss_pred             -hhCCCC-ceEeeee--ccceEEEEEEecceEEEEEhhhhh--hhcchhhhhhhhhcceeeEEecCCc------eeEEEe
Confidence             111223 3888888  788899999999999988765221  1224556667888888888887765      666666


Q ss_pred             cCCCEEEEEC-CC----------------------------------------CCcceeeeCCCCCCeEEEEEcCCCCEE
Q 008363          254 GHGGLKFWDI-RD----------------------------------------PFRPLWDIHPAPKFIYGLDWLPDPGCV  292 (568)
Q Consensus       254 s~d~v~lwD~-~~----------------------------------------~~~~~~~~~~h~~~i~~l~~sp~~~~l  292 (568)
                      +.|+-..|-. +.                                        ...++.++.+|.+.+++++|.|..+.|
T Consensus       133 ~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~L  212 (404)
T KOG1409|consen  133 GKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLL  212 (404)
T ss_pred             ccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEE
Confidence            6655222211 00                                        013445667999999999999999999


Q ss_pred             EEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee
Q 008363          293 ILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE  370 (568)
Q Consensus       293 ~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~  370 (568)
                      ++|..|..|.+||+--         ..      .....+.+|...|..++..+.-+.|++++.||.|.+|+++..+.+
T Consensus       213 fSg~~d~~vi~wdigg---------~~------g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~e  275 (404)
T KOG1409|consen  213 FSGASDHSVIMWDIGG---------RK------GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVE  275 (404)
T ss_pred             EeccccCceEEEeccC---------Cc------ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeec
Confidence            9999999999999932         22      112477899999999998888899999999999999999765444

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.98  E-value=1.3e-07  Score=99.63  Aligned_cols=191  Identities=17%  Similarity=0.143  Sum_probs=114.3

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeC-CC--cEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLG-NG--SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGT  178 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~-dg--~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~  178 (568)
                      .+....|+|+|          +.|+..+. ++  .|.+||+.+++....                           ....
T Consensus       219 ~~~~p~wSPDG----------~~La~~s~~~g~~~L~~~dl~tg~~~~l---------------------------t~~~  261 (448)
T PRK04792        219 PLMSPAWSPDG----------RKLAYVSFENRKAEIFVQDIYTQVREKV---------------------------TSFP  261 (448)
T ss_pred             cccCceECCCC----------CEEEEEEecCCCcEEEEEECCCCCeEEe---------------------------cCCC
Confidence            34478999999          67776543 33  588889887654221                           1111


Q ss_pred             CccceEEEEccCCCCCEEEE-EeCCCe--EEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363          179 QSIPLTMEWSTSPPHDYLLA-GCHDGT--VALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH  255 (568)
Q Consensus       179 ~~V~~~v~~s~~~~g~~l~s-gs~Dg~--I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~  255 (568)
                      ... ....|+  |+|+.|+. .+.+|.  |.+||+.++      . ...+..+.......+|+|++      ..|+..+.
T Consensus       262 g~~-~~~~wS--PDG~~La~~~~~~g~~~Iy~~dl~tg------~-~~~lt~~~~~~~~p~wSpDG------~~I~f~s~  325 (448)
T PRK04792        262 GIN-GAPRFS--PDGKKLALVLSKDGQPEIYVVDIATK------A-LTRITRHRAIDTEPSWHPDG------KSLIFTSE  325 (448)
T ss_pred             CCc-CCeeEC--CCCCEEEEEEeCCCCeEEEEEECCCC------C-eEECccCCCCccceEECCCC------CEEEEEEC
Confidence            222 567899  88987764 566775  666677654      2 23344455566788999998      56655443


Q ss_pred             -CC---EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCc--EEEEEccccccCCCCCCCCccCccccce
Q 008363          256 -GG---LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DGA--MRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       256 -d~---v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~--I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                       ++   |.++|+.++.....++.  .......+|+|||++|+..+. ++.  |.++|+.        +|+.         
T Consensus       326 ~~g~~~Iy~~dl~~g~~~~Lt~~--g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~--------~g~~---------  386 (448)
T PRK04792        326 RGGKPQIYRVNLASGKVSRLTFE--GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLE--------TGAM---------  386 (448)
T ss_pred             CCCCceEEEEECCCCCEEEEecC--CCCCcCeeECCCCCEEEEEEecCCceEEEEEECC--------CCCe---------
Confidence             32   77778876532222222  222346799999999988755 444  4455653        2322         


Q ss_pred             EEEecCCCCEEEEEEecCCCEEEEEeCC-Ce--EEEEEcC
Q 008363          329 HLVNCSSFAIWSVQVSRLTGMVAYCSAD-GT--VHRFQLT  365 (568)
Q Consensus       329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~D-g~--v~iwd~~  365 (568)
                      ..+... .......|+|+|++|+..+.+ |.  ++++++.
T Consensus       387 ~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~  425 (448)
T PRK04792        387 QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID  425 (448)
T ss_pred             EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            122211 112245799999887776644 33  6666663

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.98  E-value=2.7e-07  Score=97.16  Aligned_cols=186  Identities=14%  Similarity=0.123  Sum_probs=115.7

Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCC---CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHD---GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la  251 (568)
                      ..+...+ ....|+  |+|+.|+..+.+   ..|.+||+.++..    +.+   ....+.+....|+|+|      +.|+
T Consensus       195 ~~~~~~~-~~p~wS--pDG~~la~~s~~~~~~~l~~~~l~~g~~----~~l---~~~~g~~~~~~~SpDG------~~la  258 (430)
T PRK00178        195 LQSREPI-LSPRWS--PDGKRIAYVSFEQKRPRIFVQNLDTGRR----EQI---TNFEGLNGAPAWSPDG------SKLA  258 (430)
T ss_pred             ecCCCce-eeeeEC--CCCCEEEEEEcCCCCCEEEEEECCCCCE----EEc---cCCCCCcCCeEECCCC------CEEE
Confidence            3445566 888999  899988876644   3688999986621    222   2233445678999999      5655


Q ss_pred             -EEcCC--C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEEccccccCCCCCCCCccCcc
Q 008363          252 -TAGHG--G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DG--AMRIVSLLKAAYDVPATGKPFAGTK  324 (568)
Q Consensus       252 -s~s~d--~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg--~I~lwd~~~~~~~~~~~g~~~~~~~  324 (568)
                       +.+.+  . |++||+.++.  ...+..+........|+|||+.|+..+. +|  .|+++|+.        +|+.     
T Consensus       259 ~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~--------~g~~-----  323 (430)
T PRK00178        259 FVLSKDGNPEIYVMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN--------GGRA-----  323 (430)
T ss_pred             EEEccCCCceEEEEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECC--------CCCE-----
Confidence             44443  3 8888998752  3334455555677899999998887764 33  46666763        2332     


Q ss_pred             ccceEEEecCCCCEEEEEEecCCCEEEEEeCC-C--eEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEccc
Q 008363          325 QQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD-G--TVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTP  398 (568)
Q Consensus       325 ~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D-g--~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~  398 (568)
                          ..+...........|+|+|++|+..+.+ +  .|.+||+.++....-.... ..  ...++++++..+...+.
T Consensus       324 ----~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~-~~--~~p~~spdg~~i~~~~~  393 (430)
T PRK00178        324 ----ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTS-LD--ESPSVAPNGTMLIYATR  393 (430)
T ss_pred             ----EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCC-CC--CCceECCCCCEEEEEEe
Confidence                1221112223457899999988877654 3  5888999877544321111 11  12257788877766443

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.98  E-value=2e-08  Score=95.27  Aligned_cols=228  Identities=14%  Similarity=0.189  Sum_probs=145.8

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceee-EEeccCC------------ccCCCCceEEEeecc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMK-AIYLSSM------------KEGTDPRFVKLEPVF  168 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~-~l~~~~~------------~~~~~~~~v~~~~~~  168 (568)
                      -+..++|.+++..        ..++..+.|.+|++|.+....... .......            +.+..+..+...|..
T Consensus        86 KinkIrw~~~~n~--------a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prR  157 (433)
T KOG1354|consen   86 KINKIRWLDDGNL--------AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRR  157 (433)
T ss_pred             hhhhceecCCCCc--------cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeee
Confidence            3448999988732        566667789999999987632211 0000000            111222222222222


Q ss_pred             eecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC-----CCCeeEEEEccCCCC
Q 008363          169 RCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD-----TLPIRAVSWAPAESD  243 (568)
Q Consensus       169 ~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-----~~~V~~v~~~p~~~~  243 (568)
                      .|   ...|+--| .++.++  .|...++++. |=.|.+|++.-...   .-.+..++.|     +.-|++..|+|... 
T Consensus       158 v~---aNaHtyhi-NSIS~N--sD~Et~lSAD-dLRINLWnlei~d~---sFnIVDIKP~nmEeLteVITsaEFhp~~c-  226 (433)
T KOG1354|consen  158 VY---ANAHTYHI-NSISVN--SDKETFLSAD-DLRINLWNLEIIDQ---SFNIVDIKPANMEELTEVITSAEFHPHHC-  226 (433)
T ss_pred             ec---cccceeEe-eeeeec--CccceEeecc-ceeeeeccccccCC---ceeEEEccccCHHHHHHHHhhhccCHhHc-
Confidence            21   24677777 888887  8887888776 77899999873311   0122223333     34588999999875 


Q ss_pred             CCCCcEEEEEcCCC-EEEEECCCCCcce-----ee----------eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 008363          244 SDSANVILTAGHGG-LKFWDIRDPFRPL-----WD----------IHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLL  307 (568)
Q Consensus       244 ~~~~~~las~s~d~-v~lwD~~~~~~~~-----~~----------~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~  307 (568)
                          ++|+-.+..| |+|-|+|....|.     ..          +..--..|..+.|+++|++|++-.. -+|++||+.
T Consensus       227 ----n~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~n  301 (433)
T KOG1354|consen  227 ----NVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLN  301 (433)
T ss_pred             ----cEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecc
Confidence                7777777766 9999999543221     11          1112346788999999999988643 589999995


Q ss_pred             ccccCCCCCCCCccCccccceEEEecCCC------------CE---EEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363          308 KAAYDVPATGKPFAGTKQQGLHLVNCSSF------------AI---WSVQVSRLTGMVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       308 ~~~~~~~~~g~~~~~~~~~~l~~~~~h~~------------~V---~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~  368 (568)
                      .-       .        +++.++..|..            .|   ..++|+.++.+++||+....+++|++..+.
T Consensus       302 me-------~--------~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  302 ME-------A--------KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             cc-------C--------CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence            42       2        33456665542            22   357899999999999999999999976554

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.93  E-value=4.4e-07  Score=92.55  Aligned_cols=192  Identities=14%  Similarity=0.153  Sum_probs=127.0

Q ss_pred             cEE-EEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeC
Q 008363          123 GYL-AVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH  201 (568)
Q Consensus       123 ~~l-as~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~  201 (568)
                      +++ ++-..+|.|.|.|..+.+.+..+..                          .... ...+.++  +||+++++++.
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~--------------------------~~~~-h~~~~~s--~Dgr~~yv~~r   56 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPT--------------------------GGAP-HAGLKFS--PDGRYLYVANR   56 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE---------------------------STTE-EEEEE-T--T-SSEEEEEET
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcC--------------------------CCCc-eeEEEec--CCCCEEEEEcC
Confidence            344 4566789999999999888877621                          1111 1456777  89999999999


Q ss_pred             CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-CC-EEEEECCCCCcceeeeCC----
Q 008363          202 DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-GG-LKFWDIRDPFRPLWDIHP----  275 (568)
Q Consensus       202 Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~-v~lwD~~~~~~~~~~~~~----  275 (568)
                      ||.|.++|+.+.      +.+..+.... ...+++++++|      ++++++.. .+ +.++|.++. .++..+..    
T Consensus        57 dg~vsviD~~~~------~~v~~i~~G~-~~~~i~~s~DG------~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~  122 (369)
T PF02239_consen   57 DGTVSVIDLATG------KVVATIKVGG-NPRGIAVSPDG------KYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMP  122 (369)
T ss_dssp             TSEEEEEETTSS------SEEEEEE-SS-EEEEEEE--TT------TEEEEEEEETTEEEEEETTT---EEEEEE--EE-
T ss_pred             CCeEEEEECCcc------cEEEEEecCC-CcceEEEcCCC------CEEEEEecCCCceeEeccccc-cceeeccccccc
Confidence            999999999977      7777776544 46889999999      78777765 45 999999987 66655532    


Q ss_pred             ---CCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEE
Q 008363          276 ---APKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVA  351 (568)
Q Consensus       276 ---h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~  351 (568)
                         ....+..|..+|....++..-. -+.|.+.|....        +.+       ...............|+|++++++
T Consensus       123 ~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~--------~~~-------~~~~i~~g~~~~D~~~dpdgry~~  187 (369)
T PF02239_consen  123 VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP--------KNL-------KVTTIKVGRFPHDGGFDPDGRYFL  187 (369)
T ss_dssp             TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS--------SCE-------EEEEEE--TTEEEEEE-TTSSEEE
T ss_pred             ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc--------ccc-------ceeeecccccccccccCcccceee
Confidence               2345778888898886666555 588888887442        111       112222345567899999998876


Q ss_pred             EE-eCCCeEEEEEcCCCeeecc
Q 008363          352 YC-SADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       352 s~-s~Dg~v~iwd~~~~~~~~~  372 (568)
                      .+ ..+..|-++|..++++...
T Consensus       188 va~~~sn~i~viD~~~~k~v~~  209 (369)
T PF02239_consen  188 VAANGSNKIAVIDTKTGKLVAL  209 (369)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEE
T ss_pred             ecccccceeEEEeeccceEEEE
Confidence            64 5677899999998876653

...

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.93  E-value=4e-07  Score=95.93  Aligned_cols=183  Identities=16%  Similarity=0.194  Sum_probs=109.8

Q ss_pred             CcCccceEEEEccCCCCCEEEEEeC-CC--eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE-E
Q 008363          177 GTQSIPLTMEWSTSPPHDYLLAGCH-DG--TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL-T  252 (568)
Q Consensus       177 h~~~V~~~v~~s~~~~g~~l~sgs~-Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la-s  252 (568)
                      +...+ .+..|+  |+|+.|+..+. ++  .|.+||+.++..    ..+..+   .+.....+|+|++      +.|+ +
T Consensus       216 ~~~~~-~~p~wS--PDG~~La~~s~~~g~~~L~~~dl~tg~~----~~lt~~---~g~~~~~~wSPDG------~~La~~  279 (448)
T PRK04792        216 SPEPL-MSPAWS--PDGRKLAYVSFENRKAEIFVQDIYTQVR----EKVTSF---PGINGAPRFSPDG------KKLALV  279 (448)
T ss_pred             CCCcc-cCceEC--CCCCEEEEEEecCCCcEEEEEECCCCCe----EEecCC---CCCcCCeeECCCC------CEEEEE
Confidence            34455 788999  89998887654 33  588888876521    223223   2334578999999      5555 4


Q ss_pred             EcCCC---EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCc--EEEEEccccccCCCCCCCCccCcccc
Q 008363          253 AGHGG---LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DGA--MRIVSLLKAAYDVPATGKPFAGTKQQ  326 (568)
Q Consensus       253 ~s~d~---v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~--I~lwd~~~~~~~~~~~g~~~~~~~~~  326 (568)
                      .+.++   |.+||+.++  ....+..+.......+|+|||+.|+..+. ++.  |+++|+.        +|+.       
T Consensus       280 ~~~~g~~~Iy~~dl~tg--~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~--------~g~~-------  342 (448)
T PRK04792        280 LSKDGQPEIYVVDIATK--ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA--------SGKV-------  342 (448)
T ss_pred             EeCCCCeEEEEEECCCC--CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC--------CCCE-------
Confidence            44443   888898765  23344445555678999999999887764 444  5555662        2332       


Q ss_pred             ceEEEecCCCCEEEEEEecCCCEEEEEeCC-C--eEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363          327 GLHLVNCSSFAIWSVQVSRLTGMVAYCSAD-G--TVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNT  397 (568)
Q Consensus       327 ~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D-g--~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~  397 (568)
                        ..+..........+|+|+|++|+..+.+ +  .|.++|+.++....-... ....  -.++++++..|....
T Consensus       343 --~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~-~~d~--~ps~spdG~~I~~~~  411 (448)
T PRK04792        343 --SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTST-RLDE--SPSVAPNGTMVIYST  411 (448)
T ss_pred             --EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCC-CCCC--CceECCCCCEEEEEE
Confidence              1222122223457899999888776653 4  456677777654332111 1111  125677887776544

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.92  E-value=2e-08  Score=101.14  Aligned_cols=172  Identities=19%  Similarity=0.312  Sum_probs=126.1

Q ss_pred             ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363           97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG  176 (568)
Q Consensus        97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~  176 (568)
                      ..+.+.+++|..++..          ++|++|+.+|.|..||........++.....+..               .....
T Consensus       172 ~~~~~~lN~v~in~~h----------gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s---------------~pg~~  226 (703)
T KOG2321|consen  172 ETDSGELNVVSINEEH----------GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNS---------------HPGGD  226 (703)
T ss_pred             ccccccceeeeecCcc----------ceEEecccCceEEEecchhhhhheeeecccccCC---------------Ccccc
Confidence            3444577799999988          7999999999999999998666655533221000               00012


Q ss_pred             CcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe-eCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363          177 GTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF-SADTLPIRAVSWAPAESDSDSANVILTAGH  255 (568)
Q Consensus       177 h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~~~~~~las~s~  255 (568)
                      ....| +++.|+  .+|-.+++|..+|.|.|||+++.      +++..- .+..-+|..+.|.+.+    ..+.++|...
T Consensus       227 ~~~sv-Tal~F~--d~gL~~aVGts~G~v~iyDLRa~------~pl~~kdh~~e~pi~~l~~~~~~----~q~~v~S~Dk  293 (703)
T KOG2321|consen  227 AAPSV-TALKFR--DDGLHVAVGTSTGSVLIYDLRAS------KPLLVKDHGYELPIKKLDWQDTD----QQNKVVSMDK  293 (703)
T ss_pred             ccCcc-eEEEec--CCceeEEeeccCCcEEEEEcccC------CceeecccCCccceeeecccccC----CCceEEecch
Confidence            23446 999998  77999999999999999999987      554432 2345679999998875    2356766655


Q ss_pred             CCEEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363          256 GGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK  308 (568)
Q Consensus       256 d~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~  308 (568)
                      ..++|||-.++ .+...+.. ...++.+|+-|++..++++-.+..+..|=+..
T Consensus       294 ~~~kiWd~~~G-k~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  294 RILKIWDECTG-KPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             HHhhhcccccC-Cceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence            45999999988 77766644 44499999999999999998888887776543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.91  E-value=7.9e-06  Score=83.19  Aligned_cols=223  Identities=13%  Similarity=0.110  Sum_probs=134.4

Q ss_pred             eEEEEccCCCCcccccCcccEEEEEe-CCCcEEEEECCC-CceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          104 WDVKWKPYNAVDCKCKQRLGYLAVLL-GNGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       104 ~~v~~sp~~~~~~~~~~~~~~las~s-~dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      ..++++|++          ++|+++. .+|.|.++++.. +........           ++....  .. ........-
T Consensus        90 ~~i~~~~~g----------~~l~vany~~g~v~v~~l~~~g~l~~~~~~-----------~~~~g~--g~-~~~rq~~~h  145 (345)
T PF10282_consen   90 CHIAVDPDG----------RFLYVANYGGGSVSVFPLDDDGSLGEVVQT-----------VRHEGS--GP-NPDRQEGPH  145 (345)
T ss_dssp             EEEEECTTS----------SEEEEEETTTTEEEEEEECTTSEEEEEEEE-----------EESEEE--ES-STTTTSSTC
T ss_pred             EEEEEecCC----------CEEEEEEccCCeEEEEEccCCcccceeeee-----------cccCCC--CC-ccccccccc
Confidence            389999999          6777776 589999999987 333322100           000000  00 000111111


Q ss_pred             ceEEEEccCCCCCEEEEEeC-CCeEEEEEccCCCCCCCCceeEEee-CCCCCeeEEEEccCCCCCCCCcEEEEEcC-CC-
Q 008363          182 PLTMEWSTSPPHDYLLAGCH-DGTVALWKFVASDSSIDSRPLLCFS-ADTLPIRAVSWAPAESDSDSANVILTAGH-GG-  257 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~-  257 (568)
                      +.++.|+  |+|+++++... ...|.+|++......  ......+. ......+.++|+|++      +++....+ ++ 
T Consensus       146 ~H~v~~~--pdg~~v~v~dlG~D~v~~~~~~~~~~~--l~~~~~~~~~~G~GPRh~~f~pdg------~~~Yv~~e~s~~  215 (345)
T PF10282_consen  146 PHQVVFS--PDGRFVYVPDLGADRVYVYDIDDDTGK--LTPVDSIKVPPGSGPRHLAFSPDG------KYAYVVNELSNT  215 (345)
T ss_dssp             EEEEEE---TTSSEEEEEETTTTEEEEEEE-TTS-T--EEEEEEEECSTTSSEEEEEE-TTS------SEEEEEETTTTE
T ss_pred             ceeEEEC--CCCCEEEEEecCCCEEEEEEEeCCCce--EEEeeccccccCCCCcEEEEcCCc------CEEEEecCCCCc
Confidence            3788888  88988877643 347999999865310  12222232 334568899999998      56655544 55 


Q ss_pred             EEEEECCCCCc---ceeeeC----CC--CCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccc
Q 008363          258 LKFWDIRDPFR---PLWDIH----PA--PKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQG  327 (568)
Q Consensus       258 v~lwD~~~~~~---~~~~~~----~h--~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~  327 (568)
                      |.++++.....   .+..+.    +.  ......|+++|||++|+++.. .+.|.+|++..      .+|.+      ..
T Consensus       216 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~------~~g~l------~~  283 (345)
T PF10282_consen  216 VSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP------ATGTL------TL  283 (345)
T ss_dssp             EEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT------TTTTE------EE
T ss_pred             EEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec------CCCce------EE
Confidence            99999883221   112221    11  125789999999999999865 78899999943      23443      33


Q ss_pred             eEEEecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEEc--CCCeeecc
Q 008363          328 LHLVNCSSFAIWSVQVSRLTGMVAYCS-ADGTVHRFQL--TAKAVEKD  372 (568)
Q Consensus       328 l~~~~~h~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~--~~~~~~~~  372 (568)
                      +..+.......+.++++|+|++|+++. .++.|.+|++  .++.+...
T Consensus       284 ~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~  331 (345)
T PF10282_consen  284 VQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV  331 (345)
T ss_dssp             EEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence            444444445579999999999888777 5678999977  35555443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.91  E-value=1.8e-08  Score=92.14  Aligned_cols=149  Identities=16%  Similarity=0.188  Sum_probs=98.7

Q ss_pred             CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC------CCEEEEECCCC
Q 008363          193 HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH------GGLKFWDIRDP  266 (568)
Q Consensus       193 g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~------d~v~lwD~~~~  266 (568)
                      +..+++++.||.+.+++.+.- .    +..+.+..-...-.+......+      +++.+++-      |..+.|+++..
T Consensus       101 ~t~V~~~~~dg~~~v~s~~~~-~----~~~~~i~~~~~~~as~~~~~~~------~~i~s~~~g~~n~~d~~~a~~~~p~  169 (319)
T KOG4714|consen  101 DNRVCIGYADGSLAVFSTDKD-L----ALMSRIPSIHSGSASRKICRHG------NSILSGGCGNWNAQDNFYANTLDPI  169 (319)
T ss_pred             CCceEecCCCceEEEEechHH-H----hhhhhcccccccccccceeecc------cEEecCCcceEeeccceeeeccccc
Confidence            568999999999999997731 1    1111111111112223333344      45555433      34777877643


Q ss_pred             CcceeeeCCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEec
Q 008363          267 FRPLWDIHPAPKFIYGLDWLPDPGCV-ILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSR  345 (568)
Q Consensus       267 ~~~~~~~~~h~~~i~~l~~sp~~~~l-~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp  345 (568)
                       ..+..-......|++++-+|..+.+ ++|+.||.+-+||.|+..               -+...+..|..+|+.+.|+|
T Consensus       170 -~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~---------------~p~S~l~ahk~~i~eV~FHp  233 (319)
T KOG4714|consen  170 -KTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA---------------MPVSLLKAHKAEIWEVHFHP  233 (319)
T ss_pred             -ccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc---------------chHHHHHHhhhhhhheeccC
Confidence             2221111123348999999966554 556779999999998854               33457889999999999999


Q ss_pred             C-CCEEEEEeCCCeEEEEEcCCCe
Q 008363          346 L-TGMVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       346 ~-~~~l~s~s~Dg~v~iwd~~~~~  368 (568)
                      . +..|++++.||.+..||..+..
T Consensus       234 k~p~~Lft~sedGslw~wdas~~~  257 (319)
T KOG4714|consen  234 KNPEHLFTCSEDGSLWHWDASTTF  257 (319)
T ss_pred             CCchheeEecCCCcEEEEcCCCce
Confidence            8 5899999999999999997643

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.90  E-value=7.9e-09  Score=102.13  Aligned_cols=214  Identities=11%  Similarity=0.098  Sum_probs=149.9

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC  175 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~  175 (568)
                      ..|.+ .++.++.-|..+         .-|.+++.|+.|.-+|+........+.-.                       .
T Consensus       229 ~~h~g-~vhklav~p~sp---------~~f~S~geD~~v~~~Dlr~~~pa~~~~cr-----------------------~  275 (559)
T KOG1334|consen  229 APHEG-PVHKLAVEPDSP---------KPFLSCGEDAVVFHIDLRQDVPAEKFVCR-----------------------E  275 (559)
T ss_pred             ccccC-ccceeeecCCCC---------CcccccccccceeeeeeccCCccceeeee-----------------------c
Confidence            35666 666999999987         78999999999999998875444332100                       1


Q ss_pred             CCcC---ccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC------CCCCeeEEEEccCCCCCCC
Q 008363          176 GGTQ---SIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA------DTLPIRAVSWAPAESDSDS  246 (568)
Q Consensus       176 ~h~~---~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~------h~~~V~~v~~~p~~~~~~~  246 (568)
                      .+..   .. ++++..|... ..+++|+.|..+++||.+.-........+..|..      ....|++++|+.+++    
T Consensus       276 ~~~~~~v~L-~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s----  349 (559)
T KOG1334|consen  276 ADEKERVGL-YTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS----  349 (559)
T ss_pred             cCCccceee-eeEecCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc----
Confidence            1111   23 6677665533 4899999999999999874432211222333322      234599999997763    


Q ss_pred             CcEEEEEcCCCEEEEECCCCCc----------c-e-eeeCCCCC--CeEEEEE-cCCCCEEEEEeCCCcEEEEEcccccc
Q 008363          247 ANVILTAGHGGLKFWDIRDPFR----------P-L-WDIHPAPK--FIYGLDW-LPDPGCVILSFDDGAMRIVSLLKAAY  311 (568)
Q Consensus       247 ~~~las~s~d~v~lwD~~~~~~----------~-~-~~~~~h~~--~i~~l~~-sp~~~~l~s~~~dg~I~lwd~~~~~~  311 (568)
                       .+||+-.+..|+|+.-.-+..          . + ..+.+|..  .|..+-| -|...|+++|++=|.|.||+-     
T Consensus       350 -ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K-----  423 (559)
T KOG1334|consen  350 -ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDK-----  423 (559)
T ss_pred             -ceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEec-----
Confidence             777777776799994332211          1 1 22556753  4666665 578899999999999999998     


Q ss_pred             CCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          312 DVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       312 ~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                         .+++.+        +.+.+....|+||.=+|.-.+||+++.|..|+||-..
T Consensus       424 ---~t~eii--------~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~  466 (559)
T KOG1334|consen  424 ---KTGEII--------RFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPL  466 (559)
T ss_pred             ---chhHHH--------HHhhcccceEeccCCCCCCchhhccCCccceeeecCC
Confidence               346554        5667766799999999999999999999999999873

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.82  E-value=1.4e-08  Score=96.36  Aligned_cols=160  Identities=13%  Similarity=0.077  Sum_probs=120.2

Q ss_pred             EEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEE
Q 008363          184 TMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWD  262 (568)
Q Consensus       184 ~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD  262 (568)
                      ..+|+..-.|-+ ++.+.+-.|-|-|+.++       ..+.|. ..+.|.++.|+..+      +++..|...| |..+|
T Consensus       216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg-------~~qsf~-sksDVfAlQf~~s~------nLv~~GcRngeI~~iD  280 (425)
T KOG2695|consen  216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETG-------HQQSFQ-SKSDVFALQFAGSD------NLVFNGCRNGEIFVID  280 (425)
T ss_pred             hhhhhhccceee-ecccccceeEEEEeecc-------cccccc-cchhHHHHHhcccC------CeeEecccCCcEEEEE
Confidence            347775444545 55555778889999876       223443 56779999999987      8999999999 99999


Q ss_pred             CCCCC----cceeeeCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCC
Q 008363          263 IRDPF----RPLWDIHPAPKFIYGLDWLP-DPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFA  337 (568)
Q Consensus       263 ~~~~~----~~~~~~~~h~~~i~~l~~sp-~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~  337 (568)
                      +|...    .+...+ -|...|+++.... ++++|++++.+|.|.+||+|..+     .+        ..++++.||...
T Consensus       281 LR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K-----~~--------~~V~qYeGHvN~  346 (425)
T KOG2695|consen  281 LRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK-----CK--------KSVMQYEGHVNL  346 (425)
T ss_pred             eeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhh-----cc--------cceeeeeccccc
Confidence            99762    444444 5788899998887 78999999999999999998643     11        236799999765


Q ss_pred             EEEE--EEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          338 IWSV--QVSRLTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       338 V~~l--~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                      -.-+  ...+....|++++.|...+||.+..+.+..+
T Consensus       347 ~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t  383 (425)
T KOG2695|consen  347 SAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT  383 (425)
T ss_pred             ccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence            4433  3445568999999999999999987765543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.81  E-value=1.3e-05  Score=81.66  Aligned_cols=236  Identities=14%  Similarity=0.180  Sum_probs=141.7

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeC----CCcEEEEECCCC-ceeeEEeccCCccCCCCceEEEeecceecccccCCcC
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLG----NGSLEVWEVPLL-RTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ  179 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~----dg~V~iwd~~~~-~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~  179 (568)
                      -++++|++          ++|.+...    +|.|..|.+... ..+..+...              +       ..+.  
T Consensus        41 ~l~~~~~~----------~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~--------------~-------~~g~--   87 (345)
T PF10282_consen   41 WLAVSPDG----------RRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV--------------P-------SGGS--   87 (345)
T ss_dssp             CEEE-TTS----------SEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE--------------E-------ESSS--
T ss_pred             eEEEEeCC----------CEEEEEEccccCCCCEEEEEECCCcceeEEeeee--------------c-------cCCC--
Confidence            68899998          78888776    578999988763 222221000              0       0111  


Q ss_pred             ccceEEEEccCCCCCEEEEEeC-CCeEEEEEccCCCCCCCCceeEEee----------CCCCCeeEEEEccCCCCCCCCc
Q 008363          180 SIPLTMEWSTSPPHDYLLAGCH-DGTVALWKFVASDSSIDSRPLLCFS----------ADTLPIRAVSWAPAESDSDSAN  248 (568)
Q Consensus       180 ~V~~~v~~s~~~~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~----------~h~~~V~~v~~~p~~~~~~~~~  248 (568)
                      . |..++.+  +++++|+++.. +|+|.++++......  ......+.          .......++.|+|++      +
T Consensus        88 ~-p~~i~~~--~~g~~l~vany~~g~v~v~~l~~~g~l--~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg------~  156 (345)
T PF10282_consen   88 S-PCHIAVD--PDGRFLYVANYGGGSVSVFPLDDDGSL--GEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG------R  156 (345)
T ss_dssp             C-EEEEEEC--TTSSEEEEEETTTTEEEEEEECTTSEE--EEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS------S
T ss_pred             C-cEEEEEe--cCCCEEEEEEccCCeEEEEEccCCccc--ceeeeecccCCCCCcccccccccceeEEECCCC------C
Confidence            1 3567766  88888888864 899999999864110  01111121          123457899999999      7


Q ss_pred             EEEEEcCC--CEEEEECCCCCcce---eeeC-CCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCcc
Q 008363          249 VILTAGHG--GLKFWDIRDPFRPL---WDIH-PAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFA  321 (568)
Q Consensus       249 ~las~s~d--~v~lwD~~~~~~~~---~~~~-~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~  321 (568)
                      ++++...+  .|.+|++......+   ..+. ........+.|+|+++++++..+ +++|.+|++...      .|.+  
T Consensus       157 ~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~------~g~~--  228 (345)
T PF10282_consen  157 FVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS------DGSL--  228 (345)
T ss_dssp             EEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT------TTEE--
T ss_pred             EEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc------CCce--
Confidence            77777554  49999998663222   2222 33455789999999999988766 889999998621      2322  


Q ss_pred             CccccceEEEec----C--CCCEEEEEEecCCCEEEEEe-CCCeEEEEEcC--CCeeecc---CCCCCcceeeeecccCC
Q 008363          322 GTKQQGLHLVNC----S--SFAIWSVQVSRLTGMVAYCS-ADGTVHRFQLT--AKAVEKD---HSRNRPMHFLCGSVTED  389 (568)
Q Consensus       322 ~~~~~~l~~~~~----h--~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~--~~~~~~~---~~~~~~~~~~~~s~~~~  389 (568)
                          ..+..+..    .  ......|+++|+|++|.++. .++.|.+|++.  ++.+...   ...-..|+-+  .++++
T Consensus       229 ----~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~--~~s~~  302 (345)
T PF10282_consen  229 ----TEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHF--AFSPD  302 (345)
T ss_dssp             ----EEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEE--EE-TT
T ss_pred             ----eEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEE--EEeCC
Confidence                12222221    1  12578899999998877655 67789999993  3333221   1122334433  56788


Q ss_pred             CCceEEccc
Q 008363          390 ESAITVNTP  398 (568)
Q Consensus       390 ~~~i~~~~~  398 (568)
                      +..+.+...
T Consensus       303 g~~l~Va~~  311 (345)
T PF10282_consen  303 GRYLYVANQ  311 (345)
T ss_dssp             SSEEEEEET
T ss_pred             CCEEEEEec
Confidence            888777543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.78  E-value=2.1e-06  Score=89.77  Aligned_cols=184  Identities=13%  Similarity=0.101  Sum_probs=109.0

Q ss_pred             eEEEEccCCCCCEE---EEEeCCC--eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC--
Q 008363          183 LTMEWSTSPPHDYL---LAGCHDG--TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH--  255 (568)
Q Consensus       183 ~~v~~s~~~~g~~l---~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~--  255 (568)
                      .+-.|+  |||+.+   ++...+|  .|.+.++..+.    ...+..+   .+.....+|+|+|      +.||..+.  
T Consensus       188 ~sP~wS--PDG~~~~~~y~S~~~g~~~I~~~~l~~g~----~~~lt~~---~g~~~~p~wSPDG------~~Laf~s~~~  252 (428)
T PRK01029        188 ITPTWM--HIGSGFPYLYVSYKLGVPKIFLGSLENPA----GKKILAL---QGNQLMPTFSPRK------KLLAFISDRY  252 (428)
T ss_pred             ccceEc--cCCCceEEEEEEccCCCceEEEEECCCCC----ceEeecC---CCCccceEECCCC------CEEEEEECCC
Confidence            667899  888642   2444454  46666776552    2333333   4445568999999      67665543  


Q ss_pred             ---CC-EEEEECCCC--CcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccce
Q 008363          256 ---GG-LKFWDIRDP--FRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       256 ---d~-v~lwD~~~~--~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                         +. +.+|++..+  ..+......+.......+|+|||+.|+..+. +|...||.+....     .+..        .
T Consensus       253 g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~-----~g~~--------~  319 (428)
T PRK01029        253 GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDP-----EGQS--------P  319 (428)
T ss_pred             CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcc-----cccc--------e
Confidence               22 444777642  1222233222334467899999998887764 6765666542100     1111        1


Q ss_pred             EEEecCCCCEEEEEEecCCCEEEEEeCC---CeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEc
Q 008363          329 HLVNCSSFAIWSVQVSRLTGMVAYCSAD---GTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVN  396 (568)
Q Consensus       329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~D---g~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~  396 (568)
                      ..+..+...+....|+|+|+.|+..+.+   ..|++||+.++....-.....  ......+++++..|...
T Consensus       320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~--~~~~p~wSpDG~~L~f~  388 (428)
T PRK01029        320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPE--NKESPSWAIDSLHLVYS  388 (428)
T ss_pred             EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCC--CccceEECCCCCEEEEE
Confidence            2344444566788999999988877653   469999998886654322111  12234577888777653

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=3.9e-07  Score=92.00  Aligned_cols=132  Identities=21%  Similarity=0.427  Sum_probs=98.7

Q ss_pred             CcCccceEEEEccCCCCCEEE--EEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363          177 GTQSIPLTMEWSTSPPHDYLL--AGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG  254 (568)
Q Consensus       177 h~~~V~~~v~~s~~~~g~~l~--sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s  254 (568)
                      -.++| .++.|+  ++|+.++  -|..--++.|+|++.       .++..|  -.++=+++-|+|.|      ++|+-+|
T Consensus       269 k~GPV-hdv~W~--~s~~EF~VvyGfMPAkvtifnlr~-------~~v~df--~egpRN~~~fnp~g------~ii~lAG  330 (566)
T KOG2315|consen  269 KEGPV-HDVTWS--PSGREFAVVYGFMPAKVTIFNLRG-------KPVFDF--PEGPRNTAFFNPHG------NIILLAG  330 (566)
T ss_pred             CCCCc-eEEEEC--CCCCEEEEEEecccceEEEEcCCC-------CEeEeC--CCCCccceEECCCC------CEEEEee
Confidence            36788 999999  6776554  456677899999983       466655  46778899999999      8988887


Q ss_pred             CC---C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEEccccccCCCCCCCCccCcc
Q 008363          255 HG---G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD------DGAMRIVSLLKAAYDVPATGKPFAGTK  324 (568)
Q Consensus       255 ~d---~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~------dg~I~lwd~~~~~~~~~~~g~~~~~~~  324 (568)
                      -+   | |-|||+.+. +.+..+....  -+-+.|+|||+++++++.      |+.++||+.         +|..+    
T Consensus       331 FGNL~G~mEvwDv~n~-K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy---------tG~~l----  394 (566)
T KOG2315|consen  331 FGNLPGDMEVWDVPNR-KLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY---------TGSLL----  394 (566)
T ss_pred             cCCCCCceEEEeccch-hhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe---------cCcee----
Confidence            76   6 999999984 7776665433  467899999999999854      889999999         67654    


Q ss_pred             ccceEEEecCCCCEEEEEEecCC
Q 008363          325 QQGLHLVNCSSFAIWSVQVSRLT  347 (568)
Q Consensus       325 ~~~l~~~~~h~~~V~~l~~sp~~  347 (568)
                          +... -....+.+.|-|..
T Consensus       395 ----~~~~-f~sEL~qv~W~P~~  412 (566)
T KOG2315|consen  395 ----HEKM-FKSELLQVEWRPFN  412 (566)
T ss_pred             ----ehhh-hhHhHhheeeeecC
Confidence                1111 11157788888753

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.72  E-value=1.5e-06  Score=88.53  Aligned_cols=145  Identities=12%  Similarity=0.050  Sum_probs=124.2

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD  202 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D  202 (568)
                      ..|+-|...|.|.+|++..++....+..                        ..|.+.| .++.|+  .+-..|.+++.|
T Consensus        71 ~~lvlgt~~g~v~~ys~~~g~it~~~st------------------------~~h~~~v-~~~~~~--~~~~ciyS~~ad  123 (541)
T KOG4547|consen   71 SMLVLGTPQGSVLLYSVAGGEITAKLST------------------------DKHYGNV-NEILDA--QRLGCIYSVGAD  123 (541)
T ss_pred             eEEEeecCCccEEEEEecCCeEEEEEec------------------------CCCCCcc-eeeecc--cccCceEecCCc
Confidence            5788899999999999999887777632                        5788898 999988  777799999999


Q ss_pred             CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcceeeeCCCCCCeEE
Q 008363          203 GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYG  282 (568)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~~~~~~h~~~i~~  282 (568)
                      +.+..|+....      ..++.+.+....+.+++.+|++      ..+++++. .|++||+.+. ..+..|.+|.++|.+
T Consensus       124 ~~v~~~~~~~~------~~~~~~~~~~~~~~sl~is~D~------~~l~~as~-~ik~~~~~~k-evv~~ftgh~s~v~t  189 (541)
T KOG4547|consen  124 LKVVYILEKEK------VIIRIWKEQKPLVSSLCISPDG------KILLTASR-QIKVLDIETK-EVVITFTGHGSPVRT  189 (541)
T ss_pred             eeEEEEecccc------eeeeeeccCCCccceEEEcCCC------CEEEeccc-eEEEEEccCc-eEEEEecCCCcceEE
Confidence            99999999976      7888888888999999999998      78887753 3999999988 888999999999999


Q ss_pred             EEEcCC-----CCEEEEE-eCCCcEEEEEccc
Q 008363          283 LDWLPD-----PGCVILS-FDDGAMRIVSLLK  308 (568)
Q Consensus       283 l~~sp~-----~~~l~s~-~~dg~I~lwd~~~  308 (568)
                      +.|--+     |.+++++ ..+..|.+|-++.
T Consensus       190 ~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  190 LSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEEEEeccccccceeeeccccccceeEEEEEc
Confidence            999877     7777776 4477788888754

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.70  E-value=2.5e-07  Score=89.89  Aligned_cols=155  Identities=12%  Similarity=0.079  Sum_probs=104.2

Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcc
Q 008363          191 PPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRP  269 (568)
Q Consensus       191 ~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~  269 (568)
                      +.+++||++..+....++++.....  ..+++..+..- ..-+++.|.....   ...+.-.+++.. +.+|....  .+
T Consensus        72 ~~~~llAv~~~~K~~~~f~~~~~~~--~~kl~~~~~v~-~~~~ai~~~~~~~---sv~v~dkagD~~~~di~s~~~--~~  143 (390)
T KOG3914|consen   72 DSGRLVAVATSSKQRAVFDYRENPK--GAKLLDVSCVP-KRPTAISFIREDT---SVLVADKAGDVYSFDILSADS--GR  143 (390)
T ss_pred             CCceEEEEEeCCCceEEEEEecCCC--cceeeeEeecc-cCcceeeeeeccc---eEEEEeecCCceeeeeecccc--cC
Confidence            6788899998888888888775522  12333333222 2234444444431   002222333444 77776654  23


Q ss_pred             eeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceE-EEecCCCCEEEEEEecCCC
Q 008363          270 LWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH-LVNCSSFAIWSVQVSRLTG  348 (568)
Q Consensus       270 ~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~-~~~~h~~~V~~l~~sp~~~  348 (568)
                      ...+-+|-.-++.|+|+||+++|+++..|..|++-......                -+. -.-||+.-|..++.-++ .
T Consensus       144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f----------------~IesfclGH~eFVS~isl~~~-~  206 (390)
T KOG3914|consen  144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF----------------VIESFCLGHKEFVSTISLTDN-Y  206 (390)
T ss_pred             cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc----------------chhhhccccHhheeeeeeccC-c
Confidence            33455899999999999999999999999999997763211                012 23479999999998764 5


Q ss_pred             EEEEEeCCCeEEEEEcCCCeee
Q 008363          349 MVAYCSADGTVHRFQLTAKAVE  370 (568)
Q Consensus       349 ~l~s~s~Dg~v~iwd~~~~~~~  370 (568)
                      .|+++|.|++|++||+.+++..
T Consensus       207 ~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  207 LLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             eeeecCCCCcEEEEecccCCcc
Confidence            5899999999999999988765

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.70  E-value=2.2e-07  Score=87.17  Aligned_cols=270  Identities=15%  Similarity=0.187  Sum_probs=158.9

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC-cee----eEEeccCCccCCCCceEEEeecceecccccC
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL-RTM----KAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG  176 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~-~~~----~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~  176 (568)
                      .+.+|.|...|          .+|++|...|.|.+|.-... .|-    ..+++|..             .+.++.. ..
T Consensus        28 ~ItaVefd~tg----------~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~-------------EFDYLkS-le   83 (460)
T COG5170          28 KITAVEFDETG----------LYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHEL-------------EFDYLKS-LE   83 (460)
T ss_pred             eeeEEEecccc----------ceEeecCCCceEEEeecccccccchhhhhhhccccc-------------chhhhhh-cc
Confidence            56689999888          79999998999999976652 122    22222210             0000000 11


Q ss_pred             CcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCC-------------------------------CC-----Cc
Q 008363          177 GTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSS-------------------------------ID-----SR  220 (568)
Q Consensus       177 h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~-------------------------------~~-----~~  220 (568)
                      -...| ..+.|.-...-..++..+.|.+|++|.+......                               ..     ..
T Consensus        84 ieEKi-n~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~  162 (460)
T COG5170          84 IEEKI-NAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK  162 (460)
T ss_pred             HHHHh-hheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEec
Confidence            12345 7788873223346777888999999998755210                               00     01


Q ss_pred             eeEEe-eCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcce--eeeCCCC-----CCeEEEEEcCCC-CE
Q 008363          221 PLLCF-SADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPL--WDIHPAP-----KFIYGLDWLPDP-GC  291 (568)
Q Consensus       221 ~~~~~-~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~--~~~~~h~-----~~i~~l~~sp~~-~~  291 (568)
                      +.+.+ .+|.--|.+|.|+.+.      ..++++.+=.|-+|.+.-...+.  ..+.+|.     .-|++..|+|.. ..
T Consensus       163 p~rvyaNaH~yhiNSiS~NsD~------et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~  236 (460)
T COG5170         163 PCRVYANAHPYHINSISFNSDK------ETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNV  236 (460)
T ss_pred             cceeccccceeEeeeeeecCch------heeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcce
Confidence            12222 4677779999999997      67777655569999987554333  3344443     457889999954 45


Q ss_pred             EEEEeCCCcEEEEEccccccCCCCCCCCccCcccc--ceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363          292 VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQ--GLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV  369 (568)
Q Consensus       292 l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~--~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~  369 (568)
                      +..++..|.|++-|+|....=. ...+.+. ....  .+.-+.+-...|..+.|+++|++|++-+. -+|+|||+...+-
T Consensus       237 fmYSsSkG~Ikl~DlRq~alcd-n~~klfe-~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~  313 (460)
T COG5170         237 FMYSSSKGEIKLNDLRQSALCD-NSKKLFE-LTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN  313 (460)
T ss_pred             EEEecCCCcEEehhhhhhhhcc-Cchhhhh-hccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC
Confidence            5566779999999998432100 0000000 0000  01122333467889999999999998774 4899999964321


Q ss_pred             ec-c--------------CCCCCcceeeeecccCCCCceEEcccCCCCCcc
Q 008363          370 EK-D--------------HSRNRPMHFLCGSVTEDESAITVNTPLDNTPVP  405 (568)
Q Consensus       370 ~~-~--------------~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~  405 (568)
                      .- .              ++....-...-.+++-|+..+..|++..++-+.
T Consensus       314 pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy  364 (460)
T COG5170         314 PIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY  364 (460)
T ss_pred             CceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence            10 0              000111111223567777777778777776443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.70  E-value=1e-05  Score=75.87  Aligned_cols=186  Identities=13%  Similarity=0.227  Sum_probs=108.0

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee-CCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS-ADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF  260 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l  260 (568)
                      .-++|+  ||+.+||.+...|+|+++|+...... ...+...+. .-...|..+.|.+......=...|..-...| ++=
T Consensus        47 Rkl~WS--pD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S  123 (282)
T PF15492_consen   47 RKLAWS--PDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS  123 (282)
T ss_pred             eEEEEC--CCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence            679999  99999999999999999999754221 011111111 1235677777776542111012344455555 665


Q ss_pred             EECCC----CCcceeee--C-CCCCCeEEEEEcCCCCEEEEEeC----CC-------cEEEEEcccccc---CCCCCCCC
Q 008363          261 WDIRD----PFRPLWDI--H-PAPKFIYGLDWLPDPGCVILSFD----DG-------AMRIVSLLKAAY---DVPATGKP  319 (568)
Q Consensus       261 wD~~~----~~~~~~~~--~-~h~~~i~~l~~sp~~~~l~s~~~----dg-------~I~lwd~~~~~~---~~~~~g~~  319 (568)
                      |-+..    +.+..+.+  . .+...|+++.|+|..+.|++||.    ++       -+..|.+-+...   .+...+..
T Consensus       124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~  203 (282)
T PF15492_consen  124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDD  203 (282)
T ss_pred             EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcc
Confidence            55422    22333333  2 34778999999999998888754    21       255666522110   00000000


Q ss_pred             ccCc-c------ccceEEEe---cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          320 FAGT-K------QQGLHLVN---CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       320 ~~~~-~------~~~l~~~~---~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                      +... +      .-.+..+.   .....|..|..||+|..||+...+|.|.+|++-+-.+.+
T Consensus       204 ~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~  265 (282)
T PF15492_consen  204 ITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQR  265 (282)
T ss_pred             ccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhc
Confidence            0000 0      00111111   134679999999999999999999999999996654443

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.69  E-value=2.4e-06  Score=78.80  Aligned_cols=193  Identities=11%  Similarity=0.009  Sum_probs=130.6

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEE-EccCCCCCEEEEEeC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTME-WSTSPPHDYLLAGCH  201 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~-~s~~~~g~~l~sgs~  201 (568)
                      .+||.|+..|...+|...+.+....+-                         ..|...| .-+. .+  .....+..++.
T Consensus        85 ~~la~gG~~g~fd~~~~~tn~~h~~~c-------------------------d~snn~v-~~~~r~c--d~~~~~~i~sn  136 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTNDGHLYQC-------------------------DVSNNDV-TLVKRYC--DLKFPLNIASN  136 (344)
T ss_pred             cEEEeccccceeeeecccCcccceeee-------------------------cccccch-hhhhhhc--ccccceeeccC
Confidence            689999999999999998744332221                         1222222 1111 00  12235777888


Q ss_pred             CCeEEEEEccCCCCCCCCceeEEeeCCCC--CeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcce-e-eeCCC
Q 008363          202 DGTVALWKFVASDSSIDSRPLLCFSADTL--PIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPL-W-DIHPA  276 (568)
Q Consensus       202 Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~--~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~-~-~~~~h  276 (568)
                      |.++++.++..+..    +..    .|..  .+.++++++++      .++++.++.. |.+|.+......+ . .....
T Consensus       137 dht~k~~~~~~~s~----~~~----~h~~~~~~ns~~~snd~------~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t  202 (344)
T KOG4532|consen  137 DHTGKTMVVSGDSN----KFA----VHNQNLTQNSLHYSNDP------SWGSSVGDSRRVFRYAIDDESEYIENIYEAPT  202 (344)
T ss_pred             CcceeEEEEecCcc----cce----eeccccceeeeEEcCCC------ceEEEecCCCcceEEEeCCccceeeeeEeccc
Confidence            99999999875522    111    2322  37889999998      8999998887 9999887654322 2 23333


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC--CEEEEEe
Q 008363          277 PKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT--GMVAYCS  354 (568)
Q Consensus       277 ~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~--~~l~s~s  354 (568)
                      .+.-.+..|+.....++++..||++.|||+|...-       +..    ..-.+-..|.+++..+.|++.|  .+|+..-
T Consensus       203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t-------pm~----~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE  271 (344)
T KOG4532|consen  203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT-------PMA----EISSTRPHHNGAFRVCRFSLYGLLDLLFISE  271 (344)
T ss_pred             CCCceeeeeccCcceEEEEecCCcEEEEEeccccc-------chh----hhcccCCCCCCceEEEEecCCCcceEEEEec
Confidence            44457889999999999999999999999998552       111    1112334589999999999876  5566666


Q ss_pred             CCCeEEEEEcCCCe
Q 008363          355 ADGTVHRFQLTAKA  368 (568)
Q Consensus       355 ~Dg~v~iwd~~~~~  368 (568)
                      .=+.+.+-|+++.+
T Consensus       272 hfs~~hv~D~R~~~  285 (344)
T KOG4532|consen  272 HFSRVHVVDTRNYV  285 (344)
T ss_pred             CcceEEEEEcccCc
Confidence            66789999987654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.69  E-value=5.6e-06  Score=95.44  Aligned_cols=165  Identities=9%  Similarity=0.105  Sum_probs=106.0

Q ss_pred             ceEEEEccCC-CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC---------------CCCCeeEEEEccCCCCCC
Q 008363          182 PLTMEWSTSP-PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA---------------DTLPIRAVSWAPAESDSD  245 (568)
Q Consensus       182 ~~~v~~s~~~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~---------------h~~~V~~v~~~p~~~~~~  245 (568)
                      |+.|+++  + ++.++++.+.++.|++||...+.       +..+.+               .-.....|+|+|++    
T Consensus       685 P~gVa~d--p~~g~LyVad~~~~~I~v~d~~~g~-------v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG----  751 (1057)
T PLN02919        685 PWDVCFE--PVNEKVYIAMAGQHQIWEYNISDGV-------TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDL----  751 (1057)
T ss_pred             CeEEEEe--cCCCeEEEEECCCCeEEEEECCCCe-------EEEEecCCccccCCCCccccccccCccEEEEeCCC----
Confidence            4778888  6 56677777888999999987552       111111               11235679999998    


Q ss_pred             CCc-EEEEEcCCC-EEEEECCCCCcceee------------eCCC--------CCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 008363          246 SAN-VILTAGHGG-LKFWDIRDPFRPLWD------------IHPA--------PKFIYGLDWLPDPGCVILSFDDGAMRI  303 (568)
Q Consensus       246 ~~~-~las~s~d~-v~lwD~~~~~~~~~~------------~~~h--------~~~i~~l~~sp~~~~l~s~~~dg~I~l  303 (568)
                        . ++++-+.++ |++||+.++...+..            +..+        -.....++++++|..+++-+.++.|++
T Consensus       752 --~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrv  829 (1057)
T PLN02919        752 --KELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKK  829 (1057)
T ss_pred             --CEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEE
Confidence              5 555556666 999999865321110            0000        012358899999998888888999999


Q ss_pred             EEccccccCCCCCCCCcc--Cccccce---EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363          304 VSLLKAAYDVPATGKPFA--GTKQQGL---HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV  369 (568)
Q Consensus       304 wd~~~~~~~~~~~g~~~~--~~~~~~l---~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~  369 (568)
                      ||...        +....  +......   ....++-.....|+++++|+++++-+.++.|++||+.++..
T Consensus       830 iD~~t--------g~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        830 LDPAT--------KRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EECCC--------CeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            99843        21110  0000000   00111223567899999999999999999999999987654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.64  E-value=1.1e-07  Score=95.42  Aligned_cols=175  Identities=15%  Similarity=0.194  Sum_probs=122.4

Q ss_pred             cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCC-CCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363          173 LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDS-SIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~-~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la  251 (568)
                      .+.||...| ..++--  .+.+.+++++.|.+|++|.++.... .....+..++..|..+|.++.|-.+.      .+++
T Consensus       730 nf~GH~~~i-Rai~Ai--dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l------r~i~  800 (1034)
T KOG4190|consen  730 NFTGHQEKI-RAIAAI--DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL------RSIA  800 (1034)
T ss_pred             cccCcHHHh-HHHHhc--ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc------ceee
Confidence            347899888 776633  4667899999999999999975432 22345778999999999999999886      5666


Q ss_pred             EEcCCCEEEEECCCCCcceeeeC--CCCCCeEEEEEcC--CCCEEEEE-eCCCcEEEEEccccccCCCCCCCCccCcccc
Q 008363          252 TAGHGGLKFWDIRDPFRPLWDIH--PAPKFIYGLDWLP--DPGCVILS-FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQ  326 (568)
Q Consensus       252 s~s~d~v~lwD~~~~~~~~~~~~--~h~~~i~~l~~sp--~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~  326 (568)
                      ++ +++|++||.--+ +++..+.  ...+.+..+...|  +...+++| +...+|+++|.|.-.        ..     .
T Consensus       801 Sc-D~giHlWDPFig-r~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce--------~~-----~  865 (1034)
T KOG4190|consen  801 SC-DGGIHLWDPFIG-RLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE--------WT-----C  865 (1034)
T ss_pred             ec-cCcceeeccccc-chhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc--------ce-----e
Confidence            54 334999998765 4443221  1122233333333  34455555 568999999997532        21     1


Q ss_pred             ceEEE--ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          327 GLHLV--NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       327 ~l~~~--~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                      .+...  .+..+.+.++++.+.|+.++.+=..|.|.+.|.+++.+..
T Consensus       866 E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vIN  912 (1034)
T KOG4190|consen  866 ELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVIN  912 (1034)
T ss_pred             eEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceec
Confidence            11121  3445678999999999999999999999999999988654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.64  E-value=4.5e-07  Score=88.19  Aligned_cols=154  Identities=14%  Similarity=0.100  Sum_probs=103.0

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT  184 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~  184 (568)
                      .+..+|.+          .+||++..+....++++......                .+++...      ..-..  +++
T Consensus        67 ~~~~s~~~----------~llAv~~~~K~~~~f~~~~~~~~----------------~kl~~~~------~v~~~--~~a  112 (390)
T KOG3914|consen   67 LVLTSDSG----------RLVAVATSSKQRAVFDYRENPKG----------------AKLLDVS------CVPKR--PTA  112 (390)
T ss_pred             ccccCCCc----------eEEEEEeCCCceEEEEEecCCCc----------------ceeeeEe------ecccC--cce
Confidence            46677777          79999988888878887662211                1111111      11111  245


Q ss_pred             EEEccCCCCCEEEEEeCCC---eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363          185 MEWSTSPPHDYLLAGCHDG---TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF  260 (568)
Q Consensus       185 v~~s~~~~g~~l~sgs~Dg---~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l  260 (568)
                      +.|.  .+......+..-|   .+.+|....+      .+ ..+-||-+.+++|+|+|++      .+|+++..|. |++
T Consensus       113 i~~~--~~~~sv~v~dkagD~~~~di~s~~~~------~~-~~~lGhvSml~dVavS~D~------~~IitaDRDEkIRv  177 (390)
T KOG3914|consen  113 ISFI--REDTSVLVADKAGDVYSFDILSADSG------RC-EPILGHVSMLLDVAVSPDD------QFIITADRDEKIRV  177 (390)
T ss_pred             eeee--eccceEEEEeecCCceeeeeeccccc------Cc-chhhhhhhhhheeeecCCC------CEEEEecCCceEEE
Confidence            5544  3444444444444   4444444422      23 3344999999999999998      8999999998 999


Q ss_pred             EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363          261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK  308 (568)
Q Consensus       261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~  308 (568)
                      -........-...-||...|..++.-++ ..|+++|.|++|++||+++
T Consensus       178 s~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~s  224 (390)
T KOG3914|consen  178 SRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITS  224 (390)
T ss_pred             EecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEeccc
Confidence            8877653222334589999999998865 4589999999999999965

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.63  E-value=5e-07  Score=93.31  Aligned_cols=216  Identities=13%  Similarity=0.149  Sum_probs=142.6

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      ..++.|+...          +++|.|+.||.++|..+.+...-....+           +.........+++.||...| 
T Consensus        17 L~c~~WNke~----------gyIAcgG~dGlLKVlKl~t~t~d~~~~g-----------laa~snLsmNQtLeGH~~sV-   74 (1189)
T KOG2041|consen   17 LHCAEWNKES----------GYIACGGADGLLKVLKLGTDTTDLNKSG-----------LAAASNLSMNQTLEGHNASV-   74 (1189)
T ss_pred             EEEEEEcccC----------CeEEeccccceeEEEEccccCCcccccc-----------cccccccchhhhhccCcceE-
Confidence            4589999988          7999999999999998877322211111           00011112344668999999 


Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW  261 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw  261 (568)
                      .-+.|+  .+.+.|-+...+|.|.+|-+..+.+    -....-....+-|.+++|+.+|      ..|+..-.|| |.+=
T Consensus        75 ~vvTWN--e~~QKLTtSDt~GlIiVWmlykgsW----~EEMiNnRnKSvV~SmsWn~dG------~kIcIvYeDGavIVG  142 (1189)
T KOG2041|consen   75 MVVTWN--ENNQKLTTSDTSGLIIVWMLYKGSW----CEEMINNRNKSVVVSMSWNLDG------TKICIVYEDGAVIVG  142 (1189)
T ss_pred             EEEEec--cccccccccCCCceEEEEeeecccH----HHHHhhCcCccEEEEEEEcCCC------cEEEEEEccCCEEEE
Confidence            999999  7778899999999999999987743    2222233456679999999999      7888888887 7766


Q ss_pred             ECCCCCcce-eeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe----cCCC
Q 008363          262 DIRDPFRPL-WDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN----CSSF  336 (568)
Q Consensus       262 D~~~~~~~~-~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~----~h~~  336 (568)
                      .+... +.. ..+.+  .....+.|++|.+.++.+-..|.+.+||..         |....--+..|.-...    ....
T Consensus       143 svdGN-RIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnq---------gnF~~Kl~~~c~Vn~tg~~s~~~~  210 (1189)
T KOG2041|consen  143 SVDGN-RIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQ---------GNFERKLEKDCEVNGTGIFSNFPT  210 (1189)
T ss_pred             eeccc-eecchhcch--heccceeecccHHHHHhhhcCCcEEEeccc---------ccHHHhhhhceEEeeeeeecCCCc
Confidence            66543 211 22222  123578999999999998889999999973         2211101112211111    1112


Q ss_pred             CEEEEEEe--------cCCCEEEEEeCCCeEEEEEc
Q 008363          337 AIWSVQVS--------RLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       337 ~V~~l~~s--------p~~~~l~s~s~Dg~v~iwd~  364 (568)
                      .|..+.|.        |+-..|+.|-..|.+.|..-
T Consensus       211 kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~  246 (1189)
T KOG2041|consen  211 KIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS  246 (1189)
T ss_pred             cccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence            24455554        46678999999998877644

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.60  E-value=0.00014  Score=70.40  Aligned_cols=213  Identities=13%  Similarity=0.159  Sum_probs=135.4

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCC---CcEEEEECCC--CceeeEEeccCCccCCCCceEEEeeccee
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGN---GSLEVWEVPL--LRTMKAIYLSSMKEGTDPRFVKLEPVFRC  170 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~d---g~V~iwd~~~--~~~~~~l~~~~~~~~~~~~~v~~~~~~~~  170 (568)
                      ..+.+.+. =|+|+|+.          +.|.++-.+   |.|.-|.++.  |.....  ...                  
T Consensus        36 v~~~~npt-yl~~~~~~----------~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l--n~~------------------   84 (346)
T COG2706          36 VAELGNPT-YLAVNPDQ----------RHLYVVNEPGEEGGVAAYRIDPDDGRLTFL--NRQ------------------   84 (346)
T ss_pred             ccccCCCc-eEEECCCC----------CEEEEEEecCCcCcEEEEEEcCCCCeEEEe--ecc------------------
Confidence            34444344 78999998          677777654   7788887775  332211  000                  


Q ss_pred             cccccCCcCccceEEEEccCCCCCEEEEEeC-CCeEEEEEccCCCCCCCCceeEEeeCCCCC----------eeEEEEcc
Q 008363          171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH-DGTVALWKFVASDSSIDSRPLLCFSADTLP----------IRAVSWAP  239 (568)
Q Consensus       171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~----------V~~v~~~p  239 (568)
                        ...++.   +..|+.+  ++|++++++.. -|.|.++-++....   .........|.+.          +....|.|
T Consensus        85 --~~~g~~---p~yvsvd--~~g~~vf~AnY~~g~v~v~p~~~dG~---l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP  154 (346)
T COG2706          85 --TLPGSP---PCYVSVD--EDGRFVFVANYHSGSVSVYPLQADGS---LQPVVQVVKHTGSGPHERQESPHVHSANFTP  154 (346)
T ss_pred             --ccCCCC---CeEEEEC--CCCCEEEEEEccCceEEEEEcccCCc---cccceeeeecCCCCCCccccCCccceeeeCC
Confidence              002222   2567766  88988888765 68899999975321   1222233345555          88999999


Q ss_pred             CCCCCCCCcEEEEEcCC--CEEEEECCCCCcc-e--eeeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCC
Q 008363          240 AESDSDSANVILTAGHG--GLKFWDIRDPFRP-L--WDIHPAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDV  313 (568)
Q Consensus       240 ~~~~~~~~~~las~s~d--~v~lwD~~~~~~~-~--~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~  313 (568)
                      ++      ++|++...+  .|.+|++..+... .  ..+ .-...-..|.|+|++++.++.++ +++|-+|.....    
T Consensus       155 ~~------~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~----  223 (346)
T COG2706         155 DG------RYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA----  223 (346)
T ss_pred             CC------CEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC----
Confidence            99      899988665  5999999965311 1  112 22344689999999999999887 999999999652    


Q ss_pred             CCCCCCccCccccceEEEec---CCCCEEEEEEecCCCEEEEEeC-CCeEEEEEcC
Q 008363          314 PATGKPFAGTKQQGLHLVNC---SSFAIWSVQVSRLTGMVAYCSA-DGTVHRFQLT  365 (568)
Q Consensus       314 ~~~g~~~~~~~~~~l~~~~~---h~~~V~~l~~sp~~~~l~s~s~-Dg~v~iwd~~  365 (568)
                        .|+.-   ..+.+.++..   -......|..+++|++|.++.. ...|.+|.+.
T Consensus       224 --~g~~~---~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~  274 (346)
T COG2706         224 --VGKFE---ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD  274 (346)
T ss_pred             --CceEE---EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence              23321   1122222211   1234567899999999988752 3467777765

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.58  E-value=4e-06  Score=87.74  Aligned_cols=153  Identities=17%  Similarity=0.325  Sum_probs=112.8

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT  184 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~  184 (568)
                      ++.|+|.|           +||.|+. ..|.|-|..+.+.++.+                          .-|...| +.
T Consensus        20 A~Dw~~~G-----------LiAygsh-slV~VVDs~s~q~iqsi--------------------------e~h~s~V-~~   60 (1062)
T KOG1912|consen   20 AADWSPSG-----------LIAYGSH-SLVSVVDSRSLQLIQSI--------------------------ELHQSAV-TS   60 (1062)
T ss_pred             ccccCccc-----------eEEEecC-ceEEEEehhhhhhhhcc--------------------------ccCccce-eE
Confidence            78999998           8888876 57888898888887776                          6677888 99


Q ss_pred             EEEccCCC----------CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363          185 MEWSTSPP----------HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG  254 (568)
Q Consensus       185 v~~s~~~~----------g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s  254 (568)
                      |.|.|.|-          .-+||++...|.|.+||+...      ..+..+..|..++..+.|-+..  ..+..+|+...
T Consensus        61 VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~------s~~~~l~~~~~~~qdl~W~~~r--d~Srd~LlaIh  132 (1062)
T KOG1912|consen   61 VRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA------SVINWLSHSNDSVQDLCWVPAR--DDSRDVLLAIH  132 (1062)
T ss_pred             EEeccCCCchhccCccccceeEEeccccCcEEEEEehhh------hhhhhhcCCCcchhheeeeecc--CcchheeEEec
Confidence            99987432          126788888999999999876      5666778889999999998865  33445666665


Q ss_pred             CCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 008363          255 HGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLP-DPGCVILSFDDGAMRIVS  305 (568)
Q Consensus       255 ~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp-~~~~l~s~~~dg~I~lwd  305 (568)
                      .-. |.+|+..++ ..++..........|+.+.| |.+.+...+..|.|.+-+
T Consensus       133 ~ss~lvLwntdtG-~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~  184 (1062)
T KOG1912|consen  133 GSSTLVLWNTDTG-EKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCK  184 (1062)
T ss_pred             CCcEEEEEEccCC-ceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEe
Confidence            555 999999988 66666554445556788888 455555555556555544

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.56  E-value=7.7e-05  Score=72.25  Aligned_cols=219  Identities=9%  Similarity=0.108  Sum_probs=133.7

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeC-CCcEEEEECCC-CceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLG-NGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~-dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      -+++++++          ++|+++.. -|.|.++-+.. |........... .+..+. .         .....|   + 
T Consensus        93 yvsvd~~g----------~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h-~g~~p~-~---------rQ~~~h---~-  147 (346)
T COG2706          93 YVSVDEDG----------RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKH-TGSGPH-E---------RQESPH---V-  147 (346)
T ss_pred             EEEECCCC----------CEEEEEEccCceEEEEEcccCCccccceeeeec-CCCCCC-c---------cccCCc---c-
Confidence            78999999          67777764 57899999876 332211100000 000000 0         000111   2 


Q ss_pred             eEEEEccCCCCCEEEEEeC-CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-CC-EE
Q 008363          183 LTMEWSTSPPHDYLLAGCH-DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-GG-LK  259 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~-v~  259 (568)
                      -+..+.  |++++|++..- --.|.+|++..+.+..  .....+ .-...-+-|.|+|++      ++.....+ ++ |.
T Consensus       148 H~a~~t--P~~~~l~v~DLG~Dri~~y~~~dg~L~~--~~~~~v-~~G~GPRHi~FHpn~------k~aY~v~EL~stV~  216 (346)
T COG2706         148 HSANFT--PDGRYLVVPDLGTDRIFLYDLDDGKLTP--ADPAEV-KPGAGPRHIVFHPNG------KYAYLVNELNSTVD  216 (346)
T ss_pred             ceeeeC--CCCCEEEEeecCCceEEEEEcccCcccc--cccccc-CCCCCcceEEEcCCC------cEEEEEeccCCEEE
Confidence            556666  88988888753 2269999998664411  111122 334557899999999      67666655 56 99


Q ss_pred             EEECCCCCcceeeeC---------CCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363          260 FWDIRDPFRPLWDIH---------PAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH  329 (568)
Q Consensus       260 lwD~~~~~~~~~~~~---------~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~  329 (568)
                      +|........+..++         .-......|..+|||++|+++.. ...|.+|.+..      .+|++      ..+.
T Consensus       217 v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~------~~g~L------~~~~  284 (346)
T COG2706         217 VLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP------DGGKL------ELVG  284 (346)
T ss_pred             EEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC------CCCEE------EEEE
Confidence            999887432222222         12345678999999999999855 45888888854      23433      2233


Q ss_pred             EEecCCCCEEEEEEecCCCEEEEEeCC-CeEEEEEcC--CCeeec
Q 008363          330 LVNCSSFAIWSVQVSRLTGMVAYCSAD-GTVHRFQLT--AKAVEK  371 (568)
Q Consensus       330 ~~~~h~~~V~~l~~sp~~~~l~s~s~D-g~v~iwd~~--~~~~~~  371 (568)
                      ....+...-+.+.|++.+++|+++..+ ..|.+|..+  ++.+..
T Consensus       285 ~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~  329 (346)
T COG2706         285 ITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTL  329 (346)
T ss_pred             EeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence            334444556889999999999888865 458888764  444443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.55  E-value=2.8e-07  Score=87.74  Aligned_cols=120  Identities=12%  Similarity=0.245  Sum_probs=89.3

Q ss_pred             CcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEcc-CCCCCCCCcEEEEEcC
Q 008363          177 GTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAP-AESDSDSANVILTAGH  255 (568)
Q Consensus       177 h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p-~~~~~~~~~~las~s~  255 (568)
                      ....| +++.|.  ..+.++..|+.+|.|..+|++.... ..+.+.+.+ -|.+.|+++..-. ++      .+|.+.+.
T Consensus       251 sksDV-fAlQf~--~s~nLv~~GcRngeI~~iDLR~rnq-G~~~~a~rl-yh~Ssvtslq~Lq~s~------q~LmaS~M  319 (425)
T KOG2695|consen  251 SKSDV-FALQFA--GSDNLVFNGCRNGEIFVIDLRCRNQ-GNGWCAQRL-YHDSSVTSLQILQFSQ------QKLMASDM  319 (425)
T ss_pred             cchhH-HHHHhc--ccCCeeEecccCCcEEEEEeeeccc-CCCcceEEE-EcCcchhhhhhhcccc------ceEeeccC
Confidence            45667 888987  5578999999999999999986522 223455555 5888999998777 44      56666666


Q ss_pred             CC-EEEEECCCCCcc---eeeeCCCCCCe--EEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363          256 GG-LKFWDIRDPFRP---LWDIHPAPKFI--YGLDWLPDPGCVILSFDDGAMRIVSLLK  308 (568)
Q Consensus       256 d~-v~lwD~~~~~~~---~~~~~~h~~~i--~~l~~sp~~~~l~s~~~dg~I~lwd~~~  308 (568)
                      ++ |++||+|.. ++   +..+.+|-..-  .-+...+....|+++|.|-..|||.++.
T Consensus       320 ~gkikLyD~R~~-K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~  377 (425)
T KOG2695|consen  320 TGKIKLYDLRAT-KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS  377 (425)
T ss_pred             cCceeEeeehhh-hcccceeeeecccccccccccccccccceEEEccCeeEEEEEeccc
Confidence            66 999999976 55   67777775332  2334456778899999999999999953

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.54  E-value=2.4e-05  Score=81.43  Aligned_cols=190  Identities=9%  Similarity=-0.028  Sum_probs=110.4

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCC---CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGN---GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGT  178 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~d---g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~  178 (568)
                      .+....|+|++.         ..++..+.+   ..|.++|+.+++.....                           ...
T Consensus       189 ~~~~p~wSpDG~---------~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---------------------------~~~  232 (419)
T PRK04043        189 LNIFPKWANKEQ---------TAFYYTSYGERKPTLYKYNLYTGKKEKIA---------------------------SSQ  232 (419)
T ss_pred             CeEeEEECCCCC---------cEEEEEEccCCCCEEEEEECCCCcEEEEe---------------------------cCC
Confidence            444899999993         235544433   46888899886544321                           122


Q ss_pred             CccceEEEEccCCCCCEEEEE-eCC--CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363          179 QSIPLTMEWSTSPPHDYLLAG-CHD--GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH  255 (568)
Q Consensus       179 ~~V~~~v~~s~~~~g~~l~sg-s~D--g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~  255 (568)
                      +.. ...+|+  |||+.|+.. +.+  ..|.++|+.++      . ...+..+........|+|+|      +.|+-.+.
T Consensus       233 g~~-~~~~~S--PDG~~la~~~~~~g~~~Iy~~dl~~g------~-~~~LT~~~~~d~~p~~SPDG------~~I~F~Sd  296 (419)
T PRK04043        233 GML-VVSDVS--KDGSKLLLTMAPKGQPDIYLYDTNTK------T-LTQITNYPGIDVNGNFVEDD------KRIVFVSD  296 (419)
T ss_pred             CcE-EeeEEC--CCCCEEEEEEccCCCcEEEEEECCCC------c-EEEcccCCCccCccEECCCC------CEEEEEEC
Confidence            223 567898  888876644 334  45777777655      2 22333333333456899999      55554443


Q ss_pred             -CC---EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCC---------CcEEEEEccccccCCCCCCCCccC
Q 008363          256 -GG---LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDD---------GAMRIVSLLKAAYDVPATGKPFAG  322 (568)
Q Consensus       256 -d~---v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d---------g~I~lwd~~~~~~~~~~~g~~~~~  322 (568)
                       .+   |.+.|+.++.....+..+.    ....|+|||++|+..+..         ..|++.|+..        |..   
T Consensus       297 r~g~~~Iy~~dl~~g~~~rlt~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~--------g~~---  361 (419)
T PRK04043        297 RLGYPNIFMKKLNSGSVEQVVFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS--------DYI---  361 (419)
T ss_pred             CCCCceEEEEECCCCCeEeCccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC--------CCe---
Confidence             32   8888988663222222221    124899999999887653         2577777732        322   


Q ss_pred             ccccceEEEecCCCCEEEEEEecCCCEEEEEeCC-C--eEEEEEcC
Q 008363          323 TKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD-G--TVHRFQLT  365 (568)
Q Consensus       323 ~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D-g--~v~iwd~~  365 (568)
                            ..+... .......|+|+|+.|+..+.+ +  .|.+.++.
T Consensus       362 ------~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~  400 (419)
T PRK04043        362 ------RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN  400 (419)
T ss_pred             ------EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence                  222222 122357899999888776643 2  24555553

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.52  E-value=3.9e-07  Score=60.21  Aligned_cols=38  Identities=24%  Similarity=0.212  Sum_probs=35.7

Q ss_pred             cceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363          326 QGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQ  363 (568)
Q Consensus       326 ~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd  363 (568)
                      +++.++.+|...|++|+|+|++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            34679999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.52  E-value=5.2e-07  Score=82.78  Aligned_cols=72  Identities=18%  Similarity=0.380  Sum_probs=64.8

Q ss_pred             CeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcc
Q 008363          231 PIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLP-DPGCVILSFDDGAMRIVSLL  307 (568)
Q Consensus       231 ~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp-~~~~l~s~~~dg~I~lwd~~  307 (568)
                      .|.+++-+|..+     +++++|+.|| +-+||.|....++..+..|..+|+.+.|+| ++..|++++.||.+--||..
T Consensus       181 ~v~~l~~hp~qq-----~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  181 AVTALCSHPAQQ-----HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             cchhhhCCcccc-----cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence            389999999874     7888889999 999999998788888899999999999999 67899999999999999985

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.51  E-value=5.7e-07  Score=101.57  Aligned_cols=162  Identities=15%  Similarity=0.309  Sum_probs=126.7

Q ss_pred             CcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee-CCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363          177 GTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS-ADTLPIRAVSWAPAESDSDSANVILTAGH  255 (568)
Q Consensus       177 h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~~~~las~s~  255 (568)
                      +-..| .++.  -+|..-+.++|+.||.|++|....+      ..+.+++ +..+.|+.+.|+..|      +.+..+..
T Consensus      2207 ~v~~v-~r~~--sHp~~~~Yltgs~dgsv~~~~w~~~------~~v~~~rt~g~s~vtr~~f~~qG------nk~~i~d~ 2271 (2439)
T KOG1064|consen 2207 PVENV-RRMT--SHPSDPYYLTGSQDGSVRMFEWGHG------QQVVCFRTAGNSRVTRSRFNHQG------NKFGIVDG 2271 (2439)
T ss_pred             ccCce-eeec--CCCCCceEEecCCCceEEEEeccCC------CeEEEeeccCcchhhhhhhcccC------Cceeeecc
Confidence            33445 5555  4466679999999999999998866      5555443 233789999999999      88888888


Q ss_pred             CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363          256 GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF---DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV  331 (568)
Q Consensus       256 d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~---~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~  331 (568)
                      || +.+|.+. + +++...+.|....+.+.|-.  ..+++++   .++.+.+||.-...      +.       ..++  
T Consensus      2272 dg~l~l~q~~-p-k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~------~~-------s~v~-- 2332 (2439)
T KOG1064|consen 2272 DGDLSLWQAS-P-KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPP------MN-------SLVH-- 2332 (2439)
T ss_pred             CCceeecccC-C-cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCc------cc-------ceee--
Confidence            88 9999988 4 78888888998889999884  6667653   37899999984421      22       2233  


Q ss_pred             ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          332 NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       332 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                      .+|.+.++++++.|..++|++||.+|.|++||+...++...
T Consensus      2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~ 2373 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHT 2373 (2439)
T ss_pred             eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHH
Confidence            78999999999999999999999999999999976655443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.51  E-value=1.5e-05  Score=79.06  Aligned_cols=146  Identities=12%  Similarity=0.098  Sum_probs=103.3

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCC-cEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNG-SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML  173 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg-~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~  173 (568)
                      ..+|.++ |+-..+.-++          .-++.|..|| .|-|+|..+++..+.                          
T Consensus       355 qv~~~~~-VrY~r~~~~~----------e~~vigt~dgD~l~iyd~~~~e~kr~--------------------------  397 (668)
T COG4946         355 QVGKKGG-VRYRRIQVDP----------EGDVIGTNDGDKLGIYDKDGGEVKRI--------------------------  397 (668)
T ss_pred             EcCCCCc-eEEEEEccCC----------cceEEeccCCceEEEEecCCceEEEe--------------------------
Confidence            3567774 4355555555          5688888999 899999998665433                          


Q ss_pred             ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363          174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA  253 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~  253 (568)
                       .+.-+.| .++.-+  ++|.+++++.....|.+.|+.++      .....-+...+.|+.++|+|++      .+||-+
T Consensus       398 -e~~lg~I-~av~vs--~dGK~~vvaNdr~el~vididng------nv~~idkS~~~lItdf~~~~ns------r~iAYa  461 (668)
T COG4946         398 -EKDLGNI-EAVKVS--PDGKKVVVANDRFELWVIDIDNG------NVRLIDKSEYGLITDFDWHPNS------RWIAYA  461 (668)
T ss_pred             -eCCccce-EEEEEc--CCCcEEEEEcCceEEEEEEecCC------CeeEecccccceeEEEEEcCCc------eeEEEe
Confidence             4455667 888877  89999999999999999999987      4444444556789999999998      899987


Q ss_pred             cCC----C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEE
Q 008363          254 GHG----G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS  295 (568)
Q Consensus       254 s~d----~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~  295 (568)
                      --+    . |+++|+.++ +.. ......+.=.+-+|.||+++|..-
T Consensus       462 fP~gy~tq~Iklydm~~~-Kiy-~vTT~ta~DfsPaFD~d~ryLYfL  506 (668)
T COG4946         462 FPEGYYTQSIKLYDMDGG-KIY-DVTTPTAYDFSPAFDPDGRYLYFL  506 (668)
T ss_pred             cCcceeeeeEEEEecCCC-eEE-EecCCcccccCcccCCCCcEEEEE
Confidence            543    3 999999875 222 222222223566777777666543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.48  E-value=3.2e-06  Score=89.99  Aligned_cols=183  Identities=19%  Similarity=0.191  Sum_probs=128.2

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD  202 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D  202 (568)
                      ..++.|+-...+..+|+.+.+..+..                          .-....| +-+.    .+++.+.+|...
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~--------------------------~v~a~~v-~imR----~Nnr~lf~G~t~  196 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTEKETRTT--------------------------NVSASGV-TIMR----YNNRNLFCGDTR  196 (1118)
T ss_pred             cceeecchhhheeeeecccceeeeee--------------------------eccCCce-EEEE----ecCcEEEeeccc
Confidence            34555655566666777775544432                          1111123 5555    357899999999


Q ss_pred             CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC---------CC-EEEEECCCCCcceee
Q 008363          203 GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH---------GG-LKFWDIRDPFRPLWD  272 (568)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~---------d~-v~lwD~~~~~~~~~~  272 (568)
                      |+|.+-|.++.      +.++++.+|++.|.++..  .|      ++|++||.         |. |+|||+|.- +.+..
T Consensus       197 G~V~LrD~~s~------~~iht~~aHs~siSDfDv--~G------NlLitCG~S~R~~~l~~D~FvkVYDLRmm-ral~P  261 (1118)
T KOG1275|consen  197 GTVFLRDPNSF------ETIHTFDAHSGSISDFDV--QG------NLLITCGYSMRRYNLAMDPFVKVYDLRMM-RALSP  261 (1118)
T ss_pred             ceEEeecCCcC------ceeeeeeccccceeeeec--cC------CeEEEeecccccccccccchhhhhhhhhh-hccCC
Confidence            99999999876      899999999999987654  45      68888865         56 899999976 55544


Q ss_pred             eCCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEE
Q 008363          273 IHPAPKFIYGLDWLPD-PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVA  351 (568)
Q Consensus       273 ~~~h~~~i~~l~~sp~-~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~  351 (568)
                      +.-+-++ .-+.|+|. ...+++++..|...+-|....+       .+.     ..+..+......+..+++++++..|+
T Consensus       262 I~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls-------NP~-----~~~~~v~p~~s~i~~fDiSsn~~ala  328 (1118)
T KOG1275|consen  262 IQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLS-------NPP-----AGVKMVNPNGSGISAFDISSNGDALA  328 (1118)
T ss_pred             cccccCc-hhhhhcccccceEEEEecccceeeccccccC-------CCc-----cceeEEccCCCcceeEEecCCCceEE
Confidence            4433333 55778885 3567778889999999953322       221     11223333445589999999999999


Q ss_pred             EEeCCCeEEEEEc
Q 008363          352 YCSADGTVHRFQL  364 (568)
Q Consensus       352 s~s~Dg~v~iwd~  364 (568)
                      .+..+|.|.+|--
T Consensus       329 fgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  329 FGDHEGHVNLWAD  341 (1118)
T ss_pred             EecccCcEeeecC
Confidence            9999999999973

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.47  E-value=3e-07  Score=92.26  Aligned_cols=218  Identities=10%  Similarity=0.107  Sum_probs=138.1

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC-CceeeEEeccCCccCCCCceEEEeecce
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEPVFR  169 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~~~  169 (568)
                      ++..+.+|.. .|+.++-..+.          +-+++++.|.+|++|.+.. +..+.+                    ..
T Consensus       727 rL~nf~GH~~-~iRai~AidNE----------NSFiSASkDKTVKLWSik~EgD~~~t--------------------sa  775 (1034)
T KOG4190|consen  727 RLCNFTGHQE-KIRAIAAIDNE----------NSFISASKDKTVKLWSIKPEGDEIGT--------------------SA  775 (1034)
T ss_pred             eeecccCcHH-HhHHHHhcccc----------cceeeccCCceEEEEEeccccCcccc--------------------ce
Confidence            4556778988 44466655555          6789999999999999976 222211                    11


Q ss_pred             ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe--eCCCCCeeEEEEccCCCCCCCC
Q 008363          170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF--SADTLPIRAVSWAPAESDSDSA  247 (568)
Q Consensus       170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~--~~h~~~V~~v~~~p~~~~~~~~  247 (568)
                      |.-+...|+.+| ..+.|-  .+-++++++  ||.|.+||.--+      +++...  ....+.+..|..-++-.   .+
T Consensus       776 CQfTY~aHkk~i-~~igfL--~~lr~i~Sc--D~giHlWDPFig------r~Laq~~dapk~~a~~~ikcl~nv~---~~  841 (1034)
T KOG4190|consen  776 CQFTYQAHKKPI-HDIGFL--ADLRSIASC--DGGIHLWDPFIG------RLLAQMEDAPKEGAGGNIKCLENVD---RH  841 (1034)
T ss_pred             eeeEhhhccCcc-cceeee--eccceeeec--cCcceeeccccc------chhHhhhcCcccCCCceeEecccCc---ch
Confidence            333448899999 888887  565566554  899999997654      333211  12233344444444420   12


Q ss_pred             cEEEEEcCCC-EEEEECCCCC-cceeeeC---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccC
Q 008363          248 NVILTAGHGG-LKFWDIRDPF-RPLWDIH---PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAG  322 (568)
Q Consensus       248 ~~las~s~d~-v~lwD~~~~~-~~~~~~~---~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~  322 (568)
                      -++|.++... |+++|.|... .+.....   +-...+.+++..|.|+.++++-..|.|.+.|.|+        |+.+  
T Consensus       842 iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~--------G~vI--  911 (1034)
T KOG4190|consen  842 ILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARN--------GKVI--  911 (1034)
T ss_pred             heeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCC--------Ccee--
Confidence            3344445665 9999999764 2222222   3345578999999999999999999999999975        5443  


Q ss_pred             ccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEE-EEcCCCeee
Q 008363          323 TKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHR-FQLTAKAVE  370 (568)
Q Consensus       323 ~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~i-wd~~~~~~~  370 (568)
                            ..+..-......++ .|..+.|+....|.++.+ |....+...
T Consensus       912 ------Nswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh  953 (1034)
T KOG4190|consen  912 ------NSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMH  953 (1034)
T ss_pred             ------ccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeee
Confidence                  12222222222222 245567888888888888 877665443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.47  E-value=9.9e-06  Score=81.90  Aligned_cols=153  Identities=15%  Similarity=0.257  Sum_probs=95.2

Q ss_pred             EEEEccCCCCCEEEEEe----------CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363          184 TMEWSTSPPHDYLLAGC----------HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA  253 (568)
Q Consensus       184 ~v~~s~~~~g~~l~sgs----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~  253 (568)
                      .+-|.  .+|++|+.--          .-..+-|+.++...     -++..+ .-...|...+|-|.|      +.|++-
T Consensus       398 kLhWQ--k~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd-----Ipve~v-elke~vi~FaWEP~g------dkF~vi  463 (698)
T KOG2314|consen  398 KLHWQ--KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD-----IPVEVV-ELKESVIAFAWEPHG------DKFAVI  463 (698)
T ss_pred             EEEec--cCCcEEEEEEEeeccccccceEeeEEEEEeeccC-----CCceee-ecchheeeeeeccCC------CeEEEE
Confidence            45565  5666666421          12235566665442     233332 235678899999999      566554


Q ss_pred             cCC---C-EEEEECCCCC---cceeeeCCCCCCeEEEEEcCCCCEEEEE---eCCCcEEEEEccccccCCCCCCCCccCc
Q 008363          254 GHG---G-LKFWDIRDPF---RPLWDIHPAPKFIYGLDWLPDPGCVILS---FDDGAMRIVSLLKAAYDVPATGKPFAGT  323 (568)
Q Consensus       254 s~d---~-v~lwD~~~~~---~~~~~~~~h~~~i~~l~~sp~~~~l~s~---~~dg~I~lwd~~~~~~~~~~~g~~~~~~  323 (568)
                      +..   . +.+|-+.+..   ..+..+.  ....+.+.|+|.|++++.+   |..|.+.++|+....        .    
T Consensus       464 ~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~--------~----  529 (698)
T KOG2314|consen  464 SGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYAD--------L----  529 (698)
T ss_pred             EccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhh--------h----
Confidence            432   3 9999888432   2223333  3446899999999999887   458999999995411        0    


Q ss_pred             cccceEEEecCCCCEEEEEEecCCCEEEEEeC------CCeEEEEEcCCCe
Q 008363          324 KQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSA------DGTVHRFQLTAKA  368 (568)
Q Consensus       324 ~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~------Dg~v~iwd~~~~~  368 (568)
                        +. .....|. ..+.+.|.|.|+|++|++.      |.--+||++....
T Consensus       530 --k~-~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrl  576 (698)
T KOG2314|consen  530 --KD-TASPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRL  576 (698)
T ss_pred             --hh-ccCcccc-ccccceECCCCCEEEEeeehhhhccccceEEEEeecHH
Confidence              00 0112233 3477899999999999985      5556777775443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.44  E-value=1.2e-06  Score=90.62  Aligned_cols=159  Identities=17%  Similarity=0.308  Sum_probs=120.4

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCC---------ceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDS---------RPLLCFSADTLPIRAVSWAPAESDSDSANVILTA  253 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~---------~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~  253 (568)
                      .|++|+  ....+||+|+.||.+++..+.+.......         ..-+++.||++.|.-+.|+...      +.|-|.
T Consensus        18 ~c~~WN--ke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~------QKLTtS   89 (1189)
T KOG2041|consen   18 HCAEWN--KESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN------QKLTTS   89 (1189)
T ss_pred             EEEEEc--ccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc------cccccc
Confidence            799999  77889999999999999988765432211         2234778999999999999997      788888


Q ss_pred             cCCC-EEEEECCCCCcceeeeC-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363          254 GHGG-LKFWDIRDPFRPLWDIH-PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV  331 (568)
Q Consensus       254 s~d~-v~lwD~~~~~~~~~~~~-~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~  331 (568)
                      ..+| |.+|-+-.+..+-..+. ...+.|.+++|..||..|+....||.|.+=.+         .|..+++..++..   
T Consensus        90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv---------dGNRIwgKeLkg~---  157 (1189)
T KOG2041|consen   90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV---------DGNRIWGKELKGQ---  157 (1189)
T ss_pred             CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee---------ccceecchhcchh---
Confidence            8889 99999887743332222 33566799999999999999999999987666         3444332222221   


Q ss_pred             ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          332 NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       332 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                           ....+.|++|...++.+-..|.+.++|.+.
T Consensus       158 -----~l~hv~ws~D~~~~Lf~~ange~hlydnqg  187 (1189)
T KOG2041|consen  158 -----LLAHVLWSEDLEQALFKKANGETHLYDNQG  187 (1189)
T ss_pred             -----eccceeecccHHHHHhhhcCCcEEEecccc
Confidence                 223678999998888888899999998753

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.44  E-value=3.2e-06  Score=79.46  Aligned_cols=223  Identities=13%  Similarity=0.173  Sum_probs=136.0

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceee--------EEeccCC------------ccCCCCceE
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMK--------AIYLSSM------------KEGTDPRFV  162 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~--------~l~~~~~------------~~~~~~~~v  162 (568)
                      |..+.|..++.       +..+| ..+.|.+|+||.+.......        .+..+..            .....+.++
T Consensus        88 in~I~w~~~t~-------r~hFL-lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~ii  159 (460)
T COG5170          88 INAIEWFDDTG-------RNHFL-LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEII  159 (460)
T ss_pred             hhheeeecCCC-------cceEE-EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEE
Confidence            44899987762       33444 45678999999987632110        0000000            011223333


Q ss_pred             EEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCC-----CCeeEEEE
Q 008363          163 KLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADT-----LPIRAVSW  237 (568)
Q Consensus       163 ~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-----~~V~~v~~  237 (568)
                      ...|..   .....|.--| .++.++  .+...++++. |=.|.+|++.-...   .-.+..++.|.     .-|++..|
T Consensus       160 aa~p~r---vyaNaH~yhi-NSiS~N--sD~et~lSaD-dLrINLWnl~i~D~---sFnIVDiKP~nmeeLteVItSaeF  229 (460)
T COG5170         160 AAKPCR---VYANAHPYHI-NSISFN--SDKETLLSAD-DLRINLWNLEIIDG---SFNIVDIKPHNMEELTEVITSAEF  229 (460)
T ss_pred             Eeccce---eccccceeEe-eeeeec--Cchheeeecc-ceeeeeccccccCC---ceEEEeccCccHHHHHHHHhhccc
Confidence            333321   1224566667 888888  7766666664 77899999873311   12223344443     34888999


Q ss_pred             ccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcce-----ee----------eCCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 008363          238 APAESDSDSANVILTAGHGG-LKFWDIRDPFRPL-----WD----------IHPAPKFIYGLDWLPDPGCVILSFDDGAM  301 (568)
Q Consensus       238 ~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~-----~~----------~~~h~~~i~~l~~sp~~~~l~s~~~dg~I  301 (568)
                      +|...     ++|.-.+..| |++-|+|....+.     ..          +.+-...|..+.|++.|++|++-.. -+|
T Consensus       230 hp~~c-----n~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltv  303 (460)
T COG5170         230 HPEMC-----NVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTV  303 (460)
T ss_pred             CHhHc-----ceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceE
Confidence            99873     5555555555 9999999543221     11          1122456788999999999887654 579


Q ss_pred             EEEEccccccCCCCCCCCccCccccceEEEecCC------------CCE---EEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          302 RIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS------------FAI---WSVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       302 ~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~------------~~V---~~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                      +|||++...               .|+.++.-|.            ..|   ..+.|+.+.+.+++|+.....-|+-.
T Consensus       304 kiwDvnm~k---------------~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         304 KIWDVNMAK---------------NPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             EEEeccccc---------------CCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence            999997643               3344544332            233   34778888899999998888877764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.43  E-value=4.4e-05  Score=71.73  Aligned_cols=166  Identities=16%  Similarity=0.207  Sum_probs=104.5

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT  184 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~  184 (568)
                      .++|||++          .+||.+...|+|+|||+.. ..+..+.+.....+                   .-...| ..
T Consensus        48 kl~WSpD~----------tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~-------------------d~~~Ai-ag   96 (282)
T PF15492_consen   48 KLAWSPDC----------TLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPG-------------------DLSDAI-AG   96 (282)
T ss_pred             EEEECCCC----------cEEEEEcCCCeEEEEeccc-ceeEEcCcccccCC-------------------ccccce-ee
Confidence            79999999          8999999999999999987 34444433211101                   011122 22


Q ss_pred             EEEccCC-C---CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee---CCCCCeeEEEEccCCCCCCCCcEEEEEcC--
Q 008363          185 MEWSTSP-P---HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS---ADTLPIRAVSWAPAESDSDSANVILTAGH--  255 (568)
Q Consensus       185 v~~s~~~-~---g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~---~h~~~V~~v~~~p~~~~~~~~~~las~s~--  255 (568)
                      +.|.... +   ...|++-..+|.++-|-+..+.. ...+....|.   .+...|.++.++|..      ++|+.||.  
T Consensus        97 l~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~-q~y~e~hsfsf~~~yp~Gi~~~vy~p~h------~LLlVgG~~~  169 (282)
T PF15492_consen   97 LIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTN-QGYQENHSFSFSSHYPHGINSAVYHPKH------RLLLVGGCEQ  169 (282)
T ss_pred             eEeeccccccccceeEEEEeccceeeeEEEEcccC-CcceeeEEEEecccCCCceeEEEEcCCC------CEEEEeccCC
Confidence            3332110 0   12566667788888887643211 0112223332   246789999999997      67766643  


Q ss_pred             --C--------CEEEEECCCCCcce--------------------e------ee---CCCCCCeEEEEEcCCCCEEEEEe
Q 008363          256 --G--------GLKFWDIRDPFRPL--------------------W------DI---HPAPKFIYGLDWLPDPGCVILSF  296 (568)
Q Consensus       256 --d--------~v~lwD~~~~~~~~--------------------~------~~---~~h~~~i~~l~~sp~~~~l~s~~  296 (568)
                        +        |+..|.+-+.. |.                    .      .+   ......|..|..||||..|++..
T Consensus       170 ~~~~~s~a~~~GLtaWRiL~~~-Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih  248 (282)
T PF15492_consen  170 NQDGMSKASSCGLTAWRILSDS-PYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIH  248 (282)
T ss_pred             CCCccccccccCceEEEEcCCC-CcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEE
Confidence              1        47788775441 10                    0      00   12356789999999999999999


Q ss_pred             CCCcEEEEEcccc
Q 008363          297 DDGAMRIVSLLKA  309 (568)
Q Consensus       297 ~dg~I~lwd~~~~  309 (568)
                      .+|.|.||++...
T Consensus       249 ~sG~lsLW~iPsL  261 (282)
T PF15492_consen  249 FSGSLSLWEIPSL  261 (282)
T ss_pred             cCCeEEEEecCcc
Confidence            9999999999553

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.42  E-value=5e-05  Score=75.57  Aligned_cols=146  Identities=16%  Similarity=0.166  Sum_probs=106.5

Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCC-eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDG-TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA  253 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg-~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~  253 (568)
                      .+|.+.| ....+.  .++.-++.|..|| .|-|+|..++       .+..+...-+.|.++..+++|      ++++.+
T Consensus       356 v~~~~~V-rY~r~~--~~~e~~vigt~dgD~l~iyd~~~~-------e~kr~e~~lg~I~av~vs~dG------K~~vva  419 (668)
T COG4946         356 VGKKGGV-RYRRIQ--VDPEGDVIGTNDGDKLGIYDKDGG-------EVKRIEKDLGNIEAVKVSPDG------KKVVVA  419 (668)
T ss_pred             cCCCCce-EEEEEc--cCCcceEEeccCCceEEEEecCCc-------eEEEeeCCccceEEEEEcCCC------cEEEEE
Confidence            4566667 777766  5566899999999 9999999866       345566677889999999999      788887


Q ss_pred             cCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC----CCcEEEEEccccccCCCCCCCCccCccccce
Q 008363          254 GHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD----DGAMRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       254 s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~----dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                      .+.. |.+.|+.++. ....-....+-|+.++|||++++|+-+--    -..|++||+.        .++.+        
T Consensus       420 Ndr~el~vididngn-v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~--------~~Kiy--------  482 (668)
T COG4946         420 NDRFELWVIDIDNGN-VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD--------GGKIY--------  482 (668)
T ss_pred             cCceEEEEEEecCCC-eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC--------CCeEE--------
Confidence            7777 9999999884 33223344567899999999999998754    4468999994        24332        


Q ss_pred             EEEecCCCCEEEEEEecCCCEEEEEe
Q 008363          329 HLVNCSSFAIWSVQVSRLTGMVAYCS  354 (568)
Q Consensus       329 ~~~~~h~~~V~~l~~sp~~~~l~s~s  354 (568)
                       ......+-=.+-+|.|++++|..-+
T Consensus       483 -~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         483 -DVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             -EecCCcccccCcccCCCCcEEEEEe
Confidence             2222222234568999998887665

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.42  E-value=0.00015  Score=72.95  Aligned_cols=228  Identities=13%  Similarity=0.123  Sum_probs=139.6

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCC---------------cEEEEECCCCceeeEEeccCCc-----
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNG---------------SLEVWEVPLLRTMKAIYLSSMK-----  154 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg---------------~V~iwd~~~~~~~~~l~~~~~~-----  154 (568)
                      ..-|..  |..+.|+|.+          ++|.+-+..+               .+.+||+.++..+..+......     
T Consensus        68 ~~~~~~--V~~~~fSP~~----------kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp  135 (561)
T COG5354          68 RFRHPD--VKYLDFSPNE----------KYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWP  135 (561)
T ss_pred             eeecCC--ceecccCccc----------ceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccc
Confidence            355665  5589999999          8998876544               4999999998888776443220     


Q ss_pred             ----cCC-------CCceEEEeec---ceecccccCCcCccceEEEEccCCCCCEEEE-----EeCCCeEEEEEccCCCC
Q 008363          155 ----EGT-------DPRFVKLEPV---FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLA-----GCHDGTVALWKFVASDS  215 (568)
Q Consensus       155 ----~~~-------~~~~v~~~~~---~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~s-----gs~Dg~I~iwd~~~~~~  215 (568)
                          +..       ....+.+..+   ........--...| ....|+|..++..||.     ...+++++||.+...  
T Consensus       136 ~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi-~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~--  212 (561)
T COG5354         136 VLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGI-LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN--  212 (561)
T ss_pred             eeeeeecchhhhhhccCeEEEEecCCccccCchhhccccce-eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC--
Confidence                000       0011111111   00000000011334 6677886655556554     467889999999855  


Q ss_pred             CCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE------------cCCCEEEEECCCCCcceeeeCCCCCCeEEE
Q 008363          216 SIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA------------GHGGLKFWDIRDPFRPLWDIHPAPKFIYGL  283 (568)
Q Consensus       216 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~------------s~d~v~lwD~~~~~~~~~~~~~h~~~i~~l  283 (568)
                          ..+.+..-....=..+.|++.|      ++|..-            +...+.|++++....++  ...-.++|..+
T Consensus       213 ----s~l~tk~lfk~~~~qLkW~~~g------~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V--~~~~~~pVhdf  280 (561)
T COG5354         213 ----SVLVTKNLFKVSGVQLKWQVLG------KYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPV--EKDLKDPVHDF  280 (561)
T ss_pred             ----CeeeeeeeEeecccEEEEecCC------ceEEEEEEEeeecccceeccceEEEEeecccccce--eccccccceee
Confidence                3332221112223467888888      554421            11238899988442233  22557899999


Q ss_pred             EEcCCCCEEEEEe--CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCC---Ce
Q 008363          284 DWLPDPGCVILSF--DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD---GT  358 (568)
Q Consensus       284 ~~sp~~~~l~s~~--~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D---g~  358 (568)
                      +|.|+++.+++.+  .+-.+.++|++         |+.          .+....+.=..+.|+|.+++++.++.|   |.
T Consensus       281 ~W~p~S~~F~vi~g~~pa~~s~~~lr---------~Nl----------~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gn  341 (561)
T COG5354         281 TWEPLSSRFAVISGYMPASVSVFDLR---------GNL----------RFYFPEQKRNTIFFSPHERYILFAGFDNLQGN  341 (561)
T ss_pred             eecccCCceeEEecccccceeecccc---------cce----------EEecCCcccccccccCcccEEEEecCCccccc
Confidence            9999888776654  48889999995         322          334445555778899999999998876   77


Q ss_pred             EEEEEcCCCe
Q 008363          359 VHRFQLTAKA  368 (568)
Q Consensus       359 v~iwd~~~~~  368 (568)
                      +-+|+.....
T Consensus       342 i~i~~~~~rf  351 (561)
T COG5354         342 IEIFDPAGRF  351 (561)
T ss_pred             eEEeccCCce
Confidence            9999886543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.42  E-value=0.00037  Score=69.92  Aligned_cols=220  Identities=15%  Similarity=0.101  Sum_probs=128.0

Q ss_pred             EccCCCCcccccCcccEEEEEeC----------CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCC
Q 008363          108 WKPYNAVDCKCKQRLGYLAVLLG----------NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGG  177 (568)
Q Consensus       108 ~sp~~~~~~~~~~~~~~las~s~----------dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h  177 (568)
                      ++|++          +.|+++..          +..|.+||..+.+.+..+.....     +..             .  
T Consensus        53 ~spDg----------~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~-----p~~-------------~--  102 (352)
T TIGR02658        53 VASDG----------SFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG-----PRF-------------L--  102 (352)
T ss_pred             ECCCC----------CEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC-----chh-------------h--
Confidence            89998          55555554          88999999999998877633210     000             0  


Q ss_pred             cCccceEEEEccCCCCCEEEEEe-C-CCeEEEEEccCCCCCCCC---ceeEEe------------eCC----------CC
Q 008363          178 TQSIPLTMEWSTSPPHDYLLAGC-H-DGTVALWKFVASDSSIDS---RPLLCF------------SAD----------TL  230 (568)
Q Consensus       178 ~~~V~~~v~~s~~~~g~~l~sgs-~-Dg~I~iwd~~~~~~~~~~---~~~~~~------------~~h----------~~  230 (568)
                      ...-+..++++  ++|++|++.. . +..|.+.|+.+++.....   .+...+            .+-          ..
T Consensus       103 ~~~~~~~~~ls--~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~  180 (352)
T TIGR02658       103 VGTYPWMTSLT--PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNP  180 (352)
T ss_pred             ccCccceEEEC--CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCce
Confidence            00001345555  8888877665 3 678888888766431000   000000            000          00


Q ss_pred             CeeEE--------------EEcc-CCCCCCCCcEEEEEcCCCEEEEECCCCC----cceeeeC-------CCCCCeEEEE
Q 008363          231 PIRAV--------------SWAP-AESDSDSANVILTAGHGGLKFWDIRDPF----RPLWDIH-------PAPKFIYGLD  284 (568)
Q Consensus       231 ~V~~v--------------~~~p-~~~~~~~~~~las~s~d~v~lwD~~~~~----~~~~~~~-------~h~~~i~~l~  284 (568)
                      .+...              .|.+ ++      .++.....+.|.+.|+....    .+...+.       -..+.+.-++
T Consensus       181 ~~~~~~vf~~~~~~v~~rP~~~~~dg------~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia  254 (352)
T TIGR02658       181 KIKPTEVFHPEDEYLINHPAYSNKSG------RLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVA  254 (352)
T ss_pred             EEeeeeeecCCccccccCCceEcCCC------cEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEE
Confidence            01111              1223 44      55555555339999965432    2222221       1234445699


Q ss_pred             EcCCCCEEEEEeC----------CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCC-EEEEE
Q 008363          285 WLPDPGCVILSFD----------DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG-MVAYC  353 (568)
Q Consensus       285 ~sp~~~~l~s~~~----------dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~-~l~s~  353 (568)
                      ++|+++.+++...          .+.|.++|..+        ++.+        ..+. -...++.++++|+++ +|++.
T Consensus       255 ~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t--------~kvi--------~~i~-vG~~~~~iavS~Dgkp~lyvt  317 (352)
T TIGR02658       255 YHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT--------GKRL--------RKIE-LGHEIDSINVSQDAKPLLYAL  317 (352)
T ss_pred             EcCCCCEEEEEecCCccccccCCCCEEEEEECCC--------CeEE--------EEEe-CCCceeeEEECCCCCeEEEEe
Confidence            9999999988532          25799999843        4332        3443 245789999999998 77766


Q ss_pred             e-CCCeEEEEEcCCCeeeccC-CCCCcceee
Q 008363          354 S-ADGTVHRFQLTAKAVEKDH-SRNRPMHFL  382 (568)
Q Consensus       354 s-~Dg~v~iwd~~~~~~~~~~-~~~~~~~~~  382 (568)
                      . .++.|.++|+.+++..+.. ...+.|.++
T Consensus       318 n~~s~~VsViD~~t~k~i~~i~~vg~~P~~~  348 (352)
T TIGR02658       318 STGDKTLYIFDAETGKELSSVNQLGRGPQVI  348 (352)
T ss_pred             CCCCCcEEEEECcCCeEEeeeccCCCCCeEE
Confidence            6 6788999999988777664 333444443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.40  E-value=8.5e-07  Score=58.58  Aligned_cols=38  Identities=18%  Similarity=0.367  Sum_probs=35.8

Q ss_pred             cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 008363          268 RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVS  305 (568)
Q Consensus       268 ~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd  305 (568)
                      .++..+.+|.+.|++|+|+|++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            46778899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.38  E-value=0.00011  Score=83.33  Aligned_cols=222  Identities=13%  Similarity=0.207  Sum_probs=132.6

Q ss_pred             CCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------------ccCCCCc
Q 008363           99 NGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------------KEGTDPR  160 (568)
Q Consensus        99 ~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------------~~~~~~~  160 (568)
                      +.|+. +++||||+          .+||..+.+|+|.+-+ .+...+....-+..                  .-|+..+
T Consensus       120 d~GI~-a~~WSPD~----------Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK  187 (928)
T PF04762_consen  120 DSGIL-AASWSPDE----------ELLALVTGEGNLLLMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGK  187 (928)
T ss_pred             cCcEE-EEEECCCc----------CEEEEEeCCCEEEEEe-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhh
Confidence            44455 99999999          7999999999988864 23333333322211                  1111111


Q ss_pred             eEE---Eeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeC---C---CeEEEEEccCCCCCCCCceeEEeeCCC
Q 008363          161 FVK---LEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH---D---GTVALWKFVASDSSIDSRPLLCFSADT  229 (568)
Q Consensus       161 ~v~---~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~---D---g~I~iwd~~~~~~~~~~~~~~~~~~h~  229 (568)
                      ...   ..|...  -..... +...- ..|+|-  .||.++|+.+-   .   ..|+||+-. +      ....+-..-.
T Consensus       188 ~aa~~~~~p~~~~~d~~~~s-~dd~~-~~ISWR--GDG~yFAVss~~~~~~~~R~iRVy~Re-G------~L~stSE~v~  256 (928)
T PF04762_consen  188 AAARQLRDPTVPKVDEGKLS-WDDGR-VRISWR--GDGEYFAVSSVEPETGSRRVIRVYSRE-G------ELQSTSEPVD  256 (928)
T ss_pred             hhhhhccCCCCCccccCccc-cCCCc-eEEEEC--CCCcEEEEEEEEcCCCceeEEEEECCC-c------eEEeccccCC
Confidence            100   000000  000011 22233 689999  99999998875   3   478999865 3      2222222223


Q ss_pred             CCeeEEEEccCCCCCCCCcEEEEEcC--C-C-EEEEECCCCCcceeeeC--CCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 008363          230 LPIRAVSWAPAESDSDSANVILTAGH--G-G-LKFWDIRDPFRPLWDIH--PAPKFIYGLDWLPDPGCVILSFDDGAMRI  303 (568)
Q Consensus       230 ~~V~~v~~~p~~~~~~~~~~las~s~--d-~-v~lwD~~~~~~~~~~~~--~h~~~i~~l~~sp~~~~l~s~~~dg~I~l  303 (568)
                      +--.+++|.|.|      ++||+...  + . |.+|.-..-..--+.+.  .....|..|.|++|+..|+....|. |.|
T Consensus       257 gLe~~l~WrPsG------~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqL  329 (928)
T PF04762_consen  257 GLEGALSWRPSG------NLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQL  329 (928)
T ss_pred             CccCCccCCCCC------CEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceE
Confidence            334578999999      89999865  2 3 88887654322223333  3456789999999999999977655 999


Q ss_pred             EEccccccCCCCCCCCccCccccceEEEec-CCCCEEEEEEecCC-CEEEEEeCCCeEEEEEc
Q 008363          304 VSLLKAAYDVPATGKPFAGTKQQGLHLVNC-SSFAIWSVQVSRLT-GMVAYCSADGTVHRFQL  364 (568)
Q Consensus       304 wd~~~~~~~~~~~g~~~~~~~~~~l~~~~~-h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~  364 (568)
                      |-..+..        .+    ++  +.+.. ....+..+.|+|.. ..|...+.+|.+..+++
T Consensus       330 Wt~~NYH--------WY----LK--qei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  330 WTRSNYH--------WY----LK--QEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             EEeeCCE--------EE----EE--EEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence            9884421        10    01  12221 22334559999975 56777777788877766

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=8.1e-06  Score=80.54  Aligned_cols=215  Identities=11%  Similarity=0.001  Sum_probs=138.6

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeC-
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH-  201 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~-  201 (568)
                      .++.+++.||.++.|--..-.-+                       .+...+..|...| .+++-+  -+|.++.|++. 
T Consensus        21 ~fiiqASlDGh~KFWkKs~isGv-----------------------EfVKhFraHL~~I-~sl~~S--~dg~L~~Sv~d~   74 (558)
T KOG0882|consen   21 KFIIQASLDGHKKFWKKSRISGV-----------------------EFVKHFRAHLGVI-LSLAVS--YDGWLFRSVEDP   74 (558)
T ss_pred             heEEeeecchhhhhcCCCCccce-----------------------eehhhhHHHHHHH-Hhhhcc--ccceeEeeccCc
Confidence            69999999999999975431111                       1122335677777 777765  78888899888 


Q ss_pred             CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-CC-EEEEECCCCCcce-eeeCCCCC
Q 008363          202 DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-GG-LKFWDIRDPFRPL-WDIHPAPK  278 (568)
Q Consensus       202 Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~-v~lwD~~~~~~~~-~~~~~h~~  278 (568)
                      |..++++|+..-..    .....+.--.+.+..+ .++..    .-..||.... ++ +.++|-+....+. ..-.-|..
T Consensus        75 Dhs~KvfDvEn~Dm----inmiKL~~lPg~a~wv-~skGd----~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~s  145 (558)
T KOG0882|consen   75 DHSVKVFDVENFDM----INMIKLVDLPGFAEWV-TSKGD----KISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFS  145 (558)
T ss_pred             ccceeEEEeeccch----hhhcccccCCCceEEe-cCCCC----eeeeEEeecccCCCcEEECCcCCcCccceecccccC
Confidence            99999999975421    1111111112222211 22221    0124444444 46 9999988775333 44456899


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcc-ccceEEEecCCCCEEEEEEecCCCEEEEEeCCC
Q 008363          279 FIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTK-QQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADG  357 (568)
Q Consensus       279 ~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~-~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg  357 (568)
                      +|..+.++|-+..+++....|.|.-|.... .+..|. ++.....+ ..-+..+........++.|+|++..+.+-+.|.
T Consensus       146 PV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~~qfPr-~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Dr  223 (558)
T KOG0882|consen  146 PVKKIRYNQAGDSAVSIDISGMVEYWSAEG-PFQFPR-TNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDR  223 (558)
T ss_pred             ceEEEEeeccccceeeccccceeEeecCCC-cccCcc-ccccccccccchhhcccccccCccceEEccccCcccccCccc
Confidence            999999999999999998899999998852 111111 11111011 111223334456678999999999999999999


Q ss_pred             eEEEEEcCCCeeeccCC
Q 008363          358 TVHRFQLTAKAVEKDHS  374 (568)
Q Consensus       358 ~v~iwd~~~~~~~~~~~  374 (568)
                      .|+++.+.++++.+...
T Consensus       224 kVR~F~~KtGklvqeiD  240 (558)
T KOG0882|consen  224 KVRGFVFKTGKLVQEID  240 (558)
T ss_pred             EEEEEEeccchhhhhhh
Confidence            99999999998765443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.33  E-value=0.0006  Score=65.85  Aligned_cols=201  Identities=14%  Similarity=0.079  Sum_probs=122.5

Q ss_pred             EEEEcc-CCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccce
Q 008363          105 DVKWKP-YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPL  183 (568)
Q Consensus       105 ~v~~sp-~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~  183 (568)
                      .+.|.+ ++          .++++-...+.|..|+..++.....-                          ...    +.
T Consensus         4 gp~~d~~~g----------~l~~~D~~~~~i~~~~~~~~~~~~~~--------------------------~~~----~~   43 (246)
T PF08450_consen    4 GPVWDPRDG----------RLYWVDIPGGRIYRVDPDTGEVEVID--------------------------LPG----PN   43 (246)
T ss_dssp             EEEEETTTT----------EEEEEETTTTEEEEEETTTTEEEEEE--------------------------SSS----EE
T ss_pred             ceEEECCCC----------EEEEEEcCCCEEEEEECCCCeEEEEe--------------------------cCC----Cc
Confidence            567888 55          67777777899999999885543210                          111    25


Q ss_pred             EEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee--C-CCCCeeEEEEccCCCCCCCCcEEEEEcCC----
Q 008363          184 TMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS--A-DTLPIRAVSWAPAESDSDSANVILTAGHG----  256 (568)
Q Consensus       184 ~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~--~-h~~~V~~v~~~p~~~~~~~~~~las~s~d----  256 (568)
                      .+.+.. ++ ..|+.+..++ +.++|+.++.    ...+....  . .....+++++.++|      +++++....    
T Consensus        44 G~~~~~-~~-g~l~v~~~~~-~~~~d~~~g~----~~~~~~~~~~~~~~~~~ND~~vd~~G------~ly~t~~~~~~~~  110 (246)
T PF08450_consen   44 GMAFDR-PD-GRLYVADSGG-IAVVDPDTGK----VTVLADLPDGGVPFNRPNDVAVDPDG------NLYVTDSGGGGAS  110 (246)
T ss_dssp             EEEEEC-TT-SEEEEEETTC-EEEEETTTTE----EEEEEEEETTCSCTEEEEEEEE-TTS-------EEEEEECCBCTT
T ss_pred             eEEEEc-cC-CEEEEEEcCc-eEEEecCCCc----EEEEeeccCCCcccCCCceEEEcCCC------CEEEEecCCCccc
Confidence            555541 34 4666666554 5555887662    23333332  1 34568899999999      777776543    


Q ss_pred             ----C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363          257 ----G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL  330 (568)
Q Consensus       257 ----~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~  330 (568)
                          + |..++.. + ...... ..-...+.|+|+|+++.|+.+ +..+.|..|++....      +...   ....+..
T Consensus       111 ~~~~g~v~~~~~~-~-~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~------~~~~---~~~~~~~  178 (246)
T PF08450_consen  111 GIDPGSVYRIDPD-G-KVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADG------GELS---NRRVFID  178 (246)
T ss_dssp             CGGSEEEEEEETT-S-EEEEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTT------CCEE---EEEEEEE
T ss_pred             cccccceEEECCC-C-eEEEEe-cCcccccceEECCcchheeecccccceeEEEeccccc------ccee---eeeeEEE
Confidence                4 6666666 2 222222 223446899999999988765 568889999985311      1110   0011112


Q ss_pred             EecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          331 VNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       331 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                      +....+..-.+++..+|.+.++.-..+.|.+++.+ +++..
T Consensus       179 ~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~  218 (246)
T PF08450_consen  179 FPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLR  218 (246)
T ss_dssp             -SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEE
T ss_pred             cCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEE
Confidence            22222347889999999988888889999999987 54443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.33  E-value=1.2e-06  Score=92.63  Aligned_cols=195  Identities=13%  Similarity=0.102  Sum_probs=132.7

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      +..|+.... +++|+-..          +.|++|+..|.|++|++.+|......                          
T Consensus      1097 frd~~~~fT-c~afs~~~----------~hL~vG~~~Geik~~nv~sG~~e~s~-------------------------- 1139 (1516)
T KOG1832|consen 1097 FRDETALFT-CIAFSGGT----------NHLAVGSHAGEIKIFNVSSGSMEESV-------------------------- 1139 (1516)
T ss_pred             hhcccccee-eEEeecCC----------ceEEeeeccceEEEEEccCccccccc--------------------------
Confidence            445666455 99999988          79999999999999999998776554                          


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCC--eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDG--TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILT  252 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las  252 (568)
                      .+|...| +-|.  |+.+|..+++.+.-.  -..+|++...     ..+.+.|..    -.++.|+....     ..++.
T Consensus      1140 ncH~Sav-T~ve--Ps~dgs~~Ltsss~S~PlsaLW~~~s~-----~~~~Hsf~e----d~~vkFsn~~q-----~r~~g 1202 (1516)
T KOG1832|consen 1140 NCHQSAV-TLVE--PSVDGSTQLTSSSSSSPLSALWDASST-----GGPRHSFDE----DKAVKFSNSLQ-----FRALG 1202 (1516)
T ss_pred             ccccccc-cccc--ccCCcceeeeeccccCchHHHhccccc-----cCccccccc----cceeehhhhHH-----HHHhc
Confidence            6788888 8888  768888777655433  4679998753     356666633    46788888751     23333


Q ss_pred             EcCCCEEEEECCCCCcceee-eCC---CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363          253 AGHGGLKFWDIRDPFRPLWD-IHP---APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       253 ~s~d~v~lwD~~~~~~~~~~-~~~---h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                      +..|...+||+.+. .++.+ +.+   ....-++..|+|+...|+-   ||  .+||+|..                +.+
T Consensus      1203 t~~d~a~~YDvqT~-~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~----------------~aI 1260 (1516)
T KOG1832|consen 1203 TEADDALLYDVQTC-SPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIP----------------EAI 1260 (1516)
T ss_pred             ccccceEEEecccC-cHHHHhcCcchhhhhhccccccCCCcceEee---Cc--eeeeeccH----------------HHH
Confidence            34455999999998 44433 322   2222378899999886653   44  37999762                223


Q ss_pred             EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                      +.|..-+..+ .=.|+|.|.-++.-+     -|||+.+.++..
T Consensus      1261 h~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1261 HRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLLH 1297 (1516)
T ss_pred             hhhhhheecc-cccccCCCceEEeec-----hhhhhHHHHHHh
Confidence            4443332221 225999998888776     489998766544

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.32  E-value=5.3e-07  Score=92.45  Aligned_cols=191  Identities=17%  Similarity=0.320  Sum_probs=123.9

Q ss_pred             cEEEEEeCCCcEEEEECCCCcee-eEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTM-KAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH  201 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~-~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~  201 (568)
                      .++++|..+|.|-+-.+...... ..+                         ..+|... |++++|++. |.++||+|-.
T Consensus        71 cIlavG~atG~I~l~s~r~~hdSs~E~-------------------------tp~~ar~-Ct~lAwneL-Dtn~LAagld  123 (783)
T KOG1008|consen   71 CILAVGSATGNISLLSVRHPHDSSAEV-------------------------TPGYARP-CTSLAWNEL-DTNHLAAGLD  123 (783)
T ss_pred             hhhhhccccCceEEeecCCccccccee-------------------------ccccccc-ccccccccc-cHHHHHhhhh
Confidence            58999999999999888763322 110                         1345555 599999966 5567888743


Q ss_pred             ----CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCC
Q 008363          202 ----DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPA  276 (568)
Q Consensus       202 ----Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h  276 (568)
                          |-.+.|||+.+........+.. ..+-.....+++|..+.      .++.+|.... +.++|+|........+.  
T Consensus       124 khrnds~~~Iwdi~s~ltvPke~~~f-s~~~l~gqns~cwlrd~------klvlaGm~sr~~~ifdlRqs~~~~~svn--  194 (783)
T KOG1008|consen  124 KHRNDSSLKIWDINSLLTVPKESPLF-SSSTLDGQNSVCWLRDT------KLVLAGMTSRSVHIFDLRQSLDSVSSVN--  194 (783)
T ss_pred             hhcccCCccceecccccCCCcccccc-ccccccCccccccccCc------chhhcccccchhhhhhhhhhhhhhhhhh--
Confidence                5679999998663211111111 11233456688888776      7888888776 99999995433333332  


Q ss_pred             CCCeEEEEEcC-CCCEEEEEeCCCcEEEEE-ccccccCCCCCCCCccCccccceEEEecCC----CCEEEEEEecCC-CE
Q 008363          277 PKFIYGLDWLP-DPGCVILSFDDGAMRIVS-LLKAAYDVPATGKPFAGTKQQGLHLVNCSS----FAIWSVQVSRLT-GM  349 (568)
Q Consensus       277 ~~~i~~l~~sp-~~~~l~s~~~dg~I~lwd-~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~----~~V~~l~~sp~~-~~  349 (568)
                      +..+..+...| .+.++++- .||.|.+|| .++..               .++..+....    ..+..++|+|.. .+
T Consensus       195 Tk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnie---------------npl~~i~~~~N~~~~~l~~~aycPtrtgl  258 (783)
T KOG1008|consen  195 TKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIE---------------NPLQIILRNENKKPKQLFALAYCPTRTGL  258 (783)
T ss_pred             hhhcccceecCCCCCceecc-ccCceeeccchhhhc---------------cHHHHHhhCCCCcccceeeEEeccCCcch
Confidence            34566777888 55655554 499999999 65544               1222222222    248899999984 67


Q ss_pred             EEEEeCC-CeEEEEEcC
Q 008363          350 VAYCSAD-GTVHRFQLT  365 (568)
Q Consensus       350 l~s~s~D-g~v~iwd~~  365 (568)
                      +++++.| ++|+++++.
T Consensus       259 la~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  259 LAVLSRDSITIRLYDIC  275 (783)
T ss_pred             hhhhccCcceEEEeccc
Confidence            7777765 789999885

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.30  E-value=6.1e-05  Score=69.78  Aligned_cols=156  Identities=8%  Similarity=-0.042  Sum_probs=105.3

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeE-EeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLL-CFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF  260 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l  260 (568)
                      .+++++  +++.++++.+....|..|.+.....    ..+. .....+..=.+..|+...      ..||++..|+ +.|
T Consensus       162 ns~~~s--nd~~~~~~Vgds~~Vf~y~id~~se----y~~~~~~a~t~D~gF~~S~s~~~------~~FAv~~Qdg~~~I  229 (344)
T KOG4532|consen  162 NSLHYS--NDPSWGSSVGDSRRVFRYAIDDESE----YIENIYEAPTSDHGFYNSFSEND------LQFAVVFQDGTCAI  229 (344)
T ss_pred             eeeEEc--CCCceEEEecCCCcceEEEeCCccc----eeeeeEecccCCCceeeeeccCc------ceEEEEecCCcEEE
Confidence            677877  8899999999999999999986522    3333 233344556778899888      8999999999 999


Q ss_pred             EECCCCCcceeee----CCCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceE----E
Q 008363          261 WDIRDPFRPLWDI----HPAPKFIYGLDWLPDPG--CVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH----L  330 (568)
Q Consensus       261 wD~~~~~~~~~~~----~~h~~~i~~l~~sp~~~--~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~----~  330 (568)
                      ||+|....++...    ..|.+.+..+.|++-|.  +|+.+-.-+.+.+.|+|+..        -.     +.+.    .
T Consensus       230 ~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~--------~~-----q~I~i~~d~  296 (344)
T KOG4532|consen  230 YDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV--------NH-----QVIVIPDDV  296 (344)
T ss_pred             EEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc--------ee-----eEEecCccc
Confidence            9999876555333    35889999999998663  34444446789999998643        11     1111    1


Q ss_pred             EecCC-CCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          331 VNCSS-FAIWSVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       331 ~~~h~-~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                      +..|. ..|..-.|+.++.-+.+.+++ .+.=|++
T Consensus       297 ~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni  330 (344)
T KOG4532|consen  297 ERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNI  330 (344)
T ss_pred             cccccccccccccccCCCcccccccch-hhheeec
Confidence            12233 337777777776555554433 2334444

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.29  E-value=0.00059  Score=79.07  Aligned_cols=226  Identities=12%  Similarity=0.125  Sum_probs=127.8

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT  184 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~  184 (568)
                      .+++++.+.         .++++-+.++.|++||... ..+..+.+ ....+..++.+.           ..+... |..
T Consensus       572 gvavd~~~g---------~lyVaDs~n~rI~v~d~~G-~~i~~ig~-~g~~G~~dG~~~-----------~a~f~~-P~G  628 (1057)
T PLN02919        572 KLAIDLLNN---------RLFISDSNHNRIVVTDLDG-NFIVQIGS-TGEEGLRDGSFE-----------DATFNR-PQG  628 (1057)
T ss_pred             eEEEECCCC---------eEEEEECCCCeEEEEeCCC-CEEEEEcc-CCCcCCCCCchh-----------ccccCC-CcE
Confidence            577877542         5777778889999999864 44433321 111111111100           011112 477


Q ss_pred             EEEccCCCCCEEEEE-eCCCeEEEEEccCCCCCCCCceeEEeeCC-----------------CCCeeEEEEccCCCCCCC
Q 008363          185 MEWSTSPPHDYLLAG-CHDGTVALWKFVASDSSIDSRPLLCFSAD-----------------TLPIRAVSWAPAESDSDS  246 (568)
Q Consensus       185 v~~s~~~~g~~l~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-----------------~~~V~~v~~~p~~~~~~~  246 (568)
                      |++.  ++++.|+++ ...+.|+++|+.++       .+.++.+-                 -.....|+|+|++     
T Consensus       629 Iavd--~~gn~LYVaDt~n~~Ir~id~~~~-------~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~-----  694 (1057)
T PLN02919        629 LAYN--AKKNLLYVADTENHALREIDFVNE-------TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVN-----  694 (1057)
T ss_pred             EEEe--CCCCEEEEEeCCCceEEEEecCCC-------EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCC-----
Confidence            8887  667665554 44578999998754       22222110                 1124689999943     


Q ss_pred             CcEEEEEcCCC-EEEEECCCCCcceee-------eCCC------CCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcccccc
Q 008363          247 ANVILTAGHGG-LKFWDIRDPFRPLWD-------IHPA------PKFIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAY  311 (568)
Q Consensus       247 ~~~las~s~d~-v~lwD~~~~~~~~~~-------~~~h------~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~  311 (568)
                      ..++++.+.+. |++||..++......       ..++      -...+.|+|+|++..|+++ +.++.|++||+.....
T Consensus       695 g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~  774 (1057)
T PLN02919        695 EKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS  774 (1057)
T ss_pred             CeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE
Confidence            16777777766 999998765221111       0011      1234679999999866655 5579999999853110


Q ss_pred             CCCCCCCCccCccccceEEEec--------CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee
Q 008363          312 DVPATGKPFAGTKQQGLHLVNC--------SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE  370 (568)
Q Consensus       312 ~~~~~g~~~~~~~~~~l~~~~~--------h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~  370 (568)
                      .....|....   ...+..+..        .-....+++|+++|.++++-+.++.|++||..++.+.
T Consensus       775 ~~~~gg~~~~---~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~  838 (1057)
T PLN02919        775 RLLAGGDPTF---SDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT  838 (1057)
T ss_pred             EEEEeccccc---CcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence            0000000000   000001100        1112368899999999999999999999999877654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.28  E-value=0.00055  Score=71.31  Aligned_cols=178  Identities=11%  Similarity=0.104  Sum_probs=107.8

Q ss_pred             eEEEEccCCCCCE-EEEEeCC---CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC--
Q 008363          183 LTMEWSTSPPHDY-LLAGCHD---GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG--  256 (568)
Q Consensus       183 ~~v~~s~~~~g~~-l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d--  256 (568)
                      ....|+  |+|+. ++..+.+   ..|.++|+.++      +..... ...+......|+|+|.     .++++.+.+  
T Consensus       191 ~~p~wS--pDG~~~i~y~s~~~~~~~Iyv~dl~tg------~~~~lt-~~~g~~~~~~~SPDG~-----~la~~~~~~g~  256 (419)
T PRK04043        191 IFPKWA--NKEQTAFYYTSYGERKPTLYKYNLYTG------KKEKIA-SSQGMLVVSDVSKDGS-----KLLLTMAPKGQ  256 (419)
T ss_pred             EeEEEC--CCCCcEEEEEEccCCCCEEEEEECCCC------cEEEEe-cCCCcEEeeEECCCCC-----EEEEEEccCCC
Confidence            788999  88874 6544443   45888888766      322222 2355566788999992     344444433  


Q ss_pred             C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363          257 G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DG--AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN  332 (568)
Q Consensus       257 ~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg--~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~  332 (568)
                      . |.++|+.++ . ...+..+........|+|||+.|+..+. .+  .|+++|+.        +|+..      .+ ++.
T Consensus       257 ~~Iy~~dl~~g-~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~--------~g~~~------rl-t~~  319 (419)
T PRK04043        257 PDIYLYDTNTK-T-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN--------SGSVE------QV-VFH  319 (419)
T ss_pred             cEEEEEECCCC-c-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC--------CCCeE------eC-ccC
Confidence            4 888898765 2 3334433433346689999998888765 33  56667773        23321      11 112


Q ss_pred             cCCCCEEEEEEecCCCEEEEEeCC---------CeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEccc
Q 008363          333 CSSFAIWSVQVSRLTGMVAYCSAD---------GTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTP  398 (568)
Q Consensus       333 ~h~~~V~~l~~sp~~~~l~s~s~D---------g~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~  398 (568)
                      +.    ....|+|+|++|+..+..         ..|.+.|+.++....-... .  .....+++++|..|...+.
T Consensus       320 g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~--~~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        320 GK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-G--VNQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             CC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-C--CcCCeEECCCCCEEEEEEc
Confidence            22    124899999988877654         3688888887765433221 1  1112467888888776543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.25  E-value=6.5e-05  Score=75.51  Aligned_cols=140  Identities=16%  Similarity=0.244  Sum_probs=101.9

Q ss_pred             CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363          176 GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH  255 (568)
Q Consensus       176 ~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~  255 (568)
                      +-.++| ..+.|.|..++--+++|..+-++.++|++..       ..  +..-...=+.+.|+|.+      ++++.++-
T Consensus       272 ~~~~pV-hdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-------l~--~~~Pe~~rNT~~fsp~~------r~il~agF  335 (561)
T COG5354         272 DLKDPV-HDFTWEPLSSRFAVISGYMPASVSVFDLRGN-------LR--FYFPEQKRNTIFFSPHE------RYILFAGF  335 (561)
T ss_pred             cccccc-eeeeecccCCceeEEecccccceeecccccc-------eE--EecCCcccccccccCcc------cEEEEecC
Confidence            456788 9999995544434556678999999999843       22  22345556778899998      88888877


Q ss_pred             C---C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEEccccccCCCCCCCCccCccc
Q 008363          256 G---G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD------DGAMRIVSLLKAAYDVPATGKPFAGTKQ  325 (568)
Q Consensus       256 d---~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~------dg~I~lwd~~~~~~~~~~~g~~~~~~~~  325 (568)
                      |   + |-+||..+...++..+.+..  ..-+.|+||++++.+...      |..|.|||+         .|..+     
T Consensus       336 ~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v---------~g~~~-----  399 (561)
T COG5354         336 DNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV---------YGAKV-----  399 (561)
T ss_pred             CccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEe---------cCchh-----
Confidence            6   5 99999998766665665433  356789999999988632      889999999         34321     


Q ss_pred             cceEEEecCCCCEEEEEEecCCCEEEEEeCCC
Q 008363          326 QGLHLVNCSSFAIWSVQVSRLTGMVAYCSADG  357 (568)
Q Consensus       326 ~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg  357 (568)
                                ...+.+.|.|.+++..+.+.+.
T Consensus       400 ----------fel~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         400 ----------FELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             ----------hhhhhccccCCcccceeeccCC
Confidence                      1557788999888888887665

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.18  E-value=2.9e-05  Score=82.05  Aligned_cols=170  Identities=13%  Similarity=0.118  Sum_probs=116.0

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW  261 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw  261 (568)
                      +|.+++    +.+|+-|+.+|.|++++....       + .+...|+..      .-.|      .+++||+.|| |.|-
T Consensus        43 s~~av~----~~~~~~GtH~g~v~~~~~~~~-------~-~~~~~~s~~------~~~G------ey~asCS~DGkv~I~   98 (846)
T KOG2066|consen   43 SCCAVH----DKFFALGTHRGAVYLTTCQGN-------P-KTNFDHSSS------ILEG------EYVASCSDDGKVVIG   98 (846)
T ss_pred             HHHHhh----cceeeeccccceEEEEecCCc-------c-ccccccccc------ccCC------ceEEEecCCCcEEEe
Confidence            667766    579999999999999998733       3 333345443      4556      8999999999 9998


Q ss_pred             ECCCCCcceeeeCCCCCCeEEEEEcCC-----CCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCC
Q 008363          262 DIRDPFRPLWDIHPAPKFIYGLDWLPD-----PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSF  336 (568)
Q Consensus       262 D~~~~~~~~~~~~~h~~~i~~l~~sp~-----~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~  336 (568)
                      .+-+.. ....+ ....++.+++++|+     .+.+++||.-| +.++.-+-+.+       .      .. ..+..-.+
T Consensus        99 sl~~~~-~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-------k------~~-v~l~~~eG  161 (846)
T KOG2066|consen   99 SLFTDD-EITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-------K------DS-VVLSEGEG  161 (846)
T ss_pred             eccCCc-cceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-------c------cc-eeeecCcc
Confidence            888763 33222 23678999999998     56789999888 88887644331       1      11 13455678


Q ss_pred             CEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec----cCCCCCcceeeeecccCCCCceEEc
Q 008363          337 AIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK----DHSRNRPMHFLCGSVTEDESAITVN  396 (568)
Q Consensus       337 ~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~----~~~~~~~~~~~~~s~~~~~~~i~~~  396 (568)
                      +|.++.|  .|.+||-++.+| |+|||+.++....    .....|...+.|...-.++..+.+|
T Consensus       162 ~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG  222 (846)
T KOG2066|consen  162 PIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIG  222 (846)
T ss_pred             ceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEe
Confidence            9999999  578888887665 8999998765432    2122333445555455566666664

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.17  E-value=2.5e-06  Score=90.38  Aligned_cols=188  Identities=12%  Similarity=0.138  Sum_probs=129.7

Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG  254 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s  254 (568)
                      ..|+... +|++|+  .+.++|++|+..|.|+++++.++      ........|.++|+-|.=+.+|+     ..|.+++
T Consensus      1098 rd~~~~f-Tc~afs--~~~~hL~vG~~~Geik~~nv~sG------~~e~s~ncH~SavT~vePs~dgs-----~~Ltsss 1163 (1516)
T KOG1832|consen 1098 RDETALF-TCIAFS--GGTNHLAVGSHAGEIKIFNVSSG------SMEESVNCHQSAVTLVEPSVDGS-----TQLTSSS 1163 (1516)
T ss_pred             hccccce-eeEEee--cCCceEEeeeccceEEEEEccCc------cccccccccccccccccccCCcc-----eeeeecc
Confidence            6777777 999999  77789999999999999999987      66667789999999999888883     3344444


Q ss_pred             CCC--EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363          255 HGG--LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN  332 (568)
Q Consensus       255 ~d~--v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~  332 (568)
                      ...  ..+|++.....+.+.+..    -.++.|+..-..-+.|+......|||+.        ++.++.    ..+....
T Consensus      1164 ~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvq--------T~~~l~----tylt~~~ 1227 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQ--------TCSPLQ----TYLTDTV 1227 (1516)
T ss_pred             ccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecc--------cCcHHH----HhcCcch
Confidence            443  889999876666666643    2577888766656666666678899994        454442    1112222


Q ss_pred             cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccC
Q 008363          333 CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPL  399 (568)
Q Consensus       333 ~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~  399 (568)
                      +....-+++.|+|+..+|+-   ||  .+||+........  -.+.....-|.|.+.|..++|++-.
T Consensus      1228 ~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~--FD~ft~~~~G~FHP~g~eVIINSEI 1287 (1516)
T KOG1832|consen 1228 TSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHR--FDQFTDYGGGGFHPSGNEVIINSEI 1287 (1516)
T ss_pred             hhhhhccccccCCCcceEee---Cc--eeeeeccHHHHhh--hhhheecccccccCCCceEEeechh
Confidence            23334477899999887763   44  4799965422221  1122344566788888888886543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.09  E-value=0.0006  Score=77.57  Aligned_cols=218  Identities=12%  Similarity=0.212  Sum_probs=131.6

Q ss_pred             cCCceeeEEEEccCCCCcccccCcccEEEEEeC---C---CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363           98 HNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLG---N---GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS  171 (568)
Q Consensus        98 h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~---d---g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~  171 (568)
                      ++.+.+ .|+|-.||          .++|+.+.   .   ..|+||+-+ |....+-                       
T Consensus       208 ~dd~~~-~ISWRGDG----------~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS-----------------------  252 (928)
T PF04762_consen  208 WDDGRV-RISWRGDG----------EYFAVSSVEPETGSRRVIRVYSRE-GELQSTS-----------------------  252 (928)
T ss_pred             cCCCce-EEEECCCC----------cEEEEEEEEcCCCceeEEEEECCC-ceEEecc-----------------------
Confidence            444566 89999999          79998875   3   478899876 3322221                       


Q ss_pred             ccccCCcCccceEEEEccCCCCCEEEEEeC---CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCc
Q 008363          172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCH---DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSAN  248 (568)
Q Consensus       172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~  248 (568)
                          ........+++|.  |.|++||+.-.   ...|.+|.-+.-+   .+.....+......|..|.|++++      .
T Consensus       253 ----E~v~gLe~~l~Wr--PsG~lIA~~q~~~~~~~VvFfErNGLr---hgeF~l~~~~~~~~v~~l~Wn~ds------~  317 (928)
T PF04762_consen  253 ----EPVDGLEGALSWR--PSGNLIASSQRLPDRHDVVFFERNGLR---HGEFTLRFDPEEEKVIELAWNSDS------E  317 (928)
T ss_pred             ----ccCCCccCCccCC--CCCCEEEEEEEcCCCcEEEEEecCCcE---eeeEecCCCCCCceeeEEEECCCC------C
Confidence                0111112578999  88999998765   3456666643210   111112222456679999999999      8


Q ss_pred             EEEEEcCCCEEEEECCCCCcce-eeeC-CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcccccc--C--CC-------
Q 008363          249 VILTAGHGGLKFWDIRDPFRPL-WDIH-PAPKFIYGLDWLPD-PGCVILSFDDGAMRIVSLLKAAY--D--VP-------  314 (568)
Q Consensus       249 ~las~s~d~v~lwD~~~~~~~~-~~~~-~h~~~i~~l~~sp~-~~~l~s~~~dg~I~lwd~~~~~~--~--~~-------  314 (568)
                      +||..-.|.|.+|-..+-..-+ ..+. .....+..+.|+|. ...|...+.+|.+..+++.-...  +  .|       
T Consensus       318 iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~va  397 (928)
T PF04762_consen  318 ILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVA  397 (928)
T ss_pred             EEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEE
Confidence            9999888889999887653222 1221 22333455999995 44566666667776655421110  0  00       


Q ss_pred             -CCCCCccCcc------ccce--EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          315 -ATGKPFAGTK------QQGL--HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       315 -~~g~~~~~~~------~~~l--~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                       ..|..+.-+.      ..|+  ..+. -..+|.+++|++++..+++...||.|.+|....
T Consensus       398 VIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~  457 (928)
T PF04762_consen  398 VIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL  457 (928)
T ss_pred             EEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence             0011110000      0111  1222 346899999999988899999999999999654

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.07  E-value=0.00066  Score=70.20  Aligned_cols=74  Identities=19%  Similarity=0.450  Sum_probs=59.7

Q ss_pred             CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363          176 GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH  255 (568)
Q Consensus       176 ~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~  255 (568)
                      .....| .|++++  |+.+.|+.|+.||+|.+||...+        +..+..+.-.++.++|+|+|      .+|++|+.
T Consensus       257 pL~s~v-~~ca~s--p~E~kLvlGC~DgSiiLyD~~~~--------~t~~~ka~~~P~~iaWHp~g------ai~~V~s~  319 (545)
T PF11768_consen  257 PLPSQV-ICCARS--PSEDKLVLGCEDGSIILYDTTRG--------VTLLAKAEFIPTLIAWHPDG------AIFVVGSE  319 (545)
T ss_pred             ecCCcc-eEEecC--cccceEEEEecCCeEEEEEcCCC--------eeeeeeecccceEEEEcCCC------cEEEEEcC
Confidence            345566 899988  77889999999999999998754        22232334567899999999      89999999


Q ss_pred             CC-EEEEECCCC
Q 008363          256 GG-LKFWDIRDP  266 (568)
Q Consensus       256 d~-v~lwD~~~~  266 (568)
                      .| +.+||+.-.
T Consensus       320 qGelQ~FD~ALs  331 (545)
T PF11768_consen  320 QGELQCFDMALS  331 (545)
T ss_pred             CceEEEEEeecC
Confidence            89 999999754

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.05  E-value=9.3e-05  Score=77.85  Aligned_cols=155  Identities=19%  Similarity=0.265  Sum_probs=110.9

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCC------CCCCCcEEEEEcCC
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAES------DSDSANVILTAGHG  256 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~------~~~~~~~las~s~d  256 (568)
                      .+++|+  +.| +||-|+.. .|.+.|..+-      +.++.+.-|...|+.|.|.|-..      -+...-+||++...
T Consensus        19 ~A~Dw~--~~G-LiAygshs-lV~VVDs~s~------q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~   88 (1062)
T KOG1912|consen   19 NAADWS--PSG-LIAYGSHS-LVSVVDSRSL------QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS   88 (1062)
T ss_pred             cccccC--ccc-eEEEecCc-eEEEEehhhh------hhhhccccCccceeEEEeccCCCchhccCccccceeEEecccc
Confidence            678999  555 89988854 7888898765      78889999999999999998541      01122356666667


Q ss_pred             C-EEEEECCCCCcceeeeCCCCCCeEEEEEcC---CC-CEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363          257 G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLP---DP-GCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV  331 (568)
Q Consensus       257 ~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp---~~-~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~  331 (568)
                      | |.+||.... ..+..+..|..++..++|-|   +. ..|++-..-.+|.+|+.        .+|+.++        .+
T Consensus        89 GrIil~d~~~~-s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwnt--------dtG~k~W--------k~  151 (1062)
T KOG1912|consen   89 GRIILVDFVLA-SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNT--------DTGEKFW--------KY  151 (1062)
T ss_pred             CcEEEEEehhh-hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEc--------cCCceee--------cc
Confidence            8 999999977 66667778889999999976   34 45555577889999998        4576653        44


Q ss_pred             ecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEc
Q 008363          332 NCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQL  364 (568)
Q Consensus       332 ~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~  364 (568)
                      ........|+.+.|.. +.+...+..|.|.+-+.
T Consensus       152 ~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  152 DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             ccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence            4444455667777764 55555555666665554

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.04  E-value=0.00022  Score=73.67  Aligned_cols=113  Identities=14%  Similarity=0.189  Sum_probs=80.9

Q ss_pred             eeEEEEccCCCCCCCCcEEEEE----cCCC-----EEEEECCCCC-cce-eeeCCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 008363          232 IRAVSWAPAESDSDSANVILTA----GHGG-----LKFWDIRDPF-RPL-WDIHPAPKFIYGLDWLPDPGCVILSFDDGA  300 (568)
Q Consensus       232 V~~v~~~p~~~~~~~~~~las~----s~d~-----v~lwD~~~~~-~~~-~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~  300 (568)
                      ..++.|+-..     ++.+.|.    +.++     -.+|++.... +.+ .+--..+..|.+++++|+...|+.|+.||+
T Consensus       208 Pl~~~Fs~~~-----~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS  282 (545)
T PF11768_consen  208 PLDVEFSLNQ-----PYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS  282 (545)
T ss_pred             cEEEEccCCC-----CcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe
Confidence            3567777543     3555543    2222     4567765442 222 111256788999999999999999999999


Q ss_pred             EEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363          301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~  367 (568)
                      |.+||...        +          +..+..+.-.++.++|+|+|.++++|+.-|.+.+||+.-.
T Consensus       283 iiLyD~~~--------~----------~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  283 IILYDTTR--------G----------VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEEEEcCC--------C----------eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            99999843        1          1234445566789999999999999999999999999644

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=0.00015  Score=70.93  Aligned_cols=84  Identities=20%  Similarity=0.272  Sum_probs=70.2

Q ss_pred             cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363          173 LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILT  252 (568)
Q Consensus       173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las  252 (568)
                      .+.+|...| ..++|+|...| ++..++.+.+|+|.|+++.      ..+..+..| ..+++++|.-+.     .++|..
T Consensus       188 ~lp~~g~~I-rdlafSp~~~G-Ll~~asl~nkiki~dlet~------~~vssy~a~-~~~wSC~wDlde-----~h~IYa  253 (463)
T KOG1645|consen  188 ILPGEGSFI-RDLAFSPFNEG-LLGLASLGNKIKIMDLETS------CVVSSYIAY-NQIWSCCWDLDE-----RHVIYA  253 (463)
T ss_pred             cccccchhh-hhhccCccccc-eeeeeccCceEEEEecccc------eeeeheecc-CCceeeeeccCC-----cceeEE
Confidence            446788888 99999976554 8999999999999999977      777788787 789999999987     378888


Q ss_pred             EcCCC-EEEEECCCCCcce
Q 008363          253 AGHGG-LKFWDIRDPFRPL  270 (568)
Q Consensus       253 ~s~d~-v~lwD~~~~~~~~  270 (568)
                      |-..| |.|||+|.+..++
T Consensus       254 Gl~nG~VlvyD~R~~~~~~  272 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPEGPL  272 (463)
T ss_pred             eccCceEEEEEccCCCchH
Confidence            88888 9999999876444

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.01  E-value=4.2e-05  Score=81.81  Aligned_cols=141  Identities=14%  Similarity=0.176  Sum_probs=107.5

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeC-
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH-  201 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~-  201 (568)
                      ++|.+|...|+|.+-|..+.+.+.++                          ..|++.| ..++    -.|+.|++++. 
T Consensus       188 r~lf~G~t~G~V~LrD~~s~~~iht~--------------------------~aHs~si-SDfD----v~GNlLitCG~S  236 (1118)
T KOG1275|consen  188 RNLFCGDTRGTVFLRDPNSFETIHTF--------------------------DAHSGSI-SDFD----VQGNLLITCGYS  236 (1118)
T ss_pred             cEEEeecccceEEeecCCcCceeeee--------------------------eccccce-eeee----ccCCeEEEeecc
Confidence            68889999999999999998888777                          7888888 6666    34789998876 


Q ss_pred             --------CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEE---CCCCCcc
Q 008363          202 --------DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWD---IRDPFRP  269 (568)
Q Consensus       202 --------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD---~~~~~~~  269 (568)
                              |.-|+|||++.-      +.+.-+.-+-++ .-+.|+|.-+     ..+|.++..| ..+-|   +.++...
T Consensus       237 ~R~~~l~~D~FvkVYDLRmm------ral~PI~~~~~P-~flrf~Psl~-----t~~~V~S~sGq~q~vd~~~lsNP~~~  304 (1118)
T KOG1275|consen  237 MRRYNLAMDPFVKVYDLRMM------RALSPIQFPYGP-QFLRFHPSLT-----TRLAVTSQSGQFQFVDTATLSNPPAG  304 (1118)
T ss_pred             cccccccccchhhhhhhhhh------hccCCcccccCc-hhhhhccccc-----ceEEEEecccceeeccccccCCCccc
Confidence                    456899999865      333333333343 5578888863     6788888877 99999   4444333


Q ss_pred             eeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 008363          270 LWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSL  306 (568)
Q Consensus       270 ~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~  306 (568)
                      +..+......+..+++++.+..|+.|..+|.|.+|--
T Consensus       305 ~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  305 VKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             eeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            4445555667999999999999999999999999973

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=0.001  Score=71.28  Aligned_cols=201  Identities=13%  Similarity=0.170  Sum_probs=126.5

Q ss_pred             EEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEE
Q 008363          106 VKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTM  185 (568)
Q Consensus       106 v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v  185 (568)
                      -+|++.+          ..+|.|+.+|.|.+.+-.- +.++.+                          ..+...+ ...
T Consensus        29 sc~~s~~----------~~vvigt~~G~V~~Ln~s~-~~~~~f--------------------------qa~~~si-v~~   70 (933)
T KOG2114|consen   29 SCCSSST----------GSVVIGTADGRVVILNSSF-QLIRGF--------------------------QAYEQSI-VQF   70 (933)
T ss_pred             eEEcCCC----------ceEEEeeccccEEEecccc-eeeehh--------------------------eecchhh-hhH
Confidence            4577777          7999999999888876433 222333                          2333332 222


Q ss_pred             EEccCCCCCEEEEEeCCC-----eEEEEEccCCCCCCCCcee---EEee----CCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363          186 EWSTSPPHDYLLAGCHDG-----TVALWKFVASDSSIDSRPL---LCFS----ADTLPIRAVSWAPAESDSDSANVILTA  253 (568)
Q Consensus       186 ~~s~~~~g~~l~sgs~Dg-----~I~iwd~~~~~~~~~~~~~---~~~~----~h~~~V~~v~~~p~~~~~~~~~~las~  253 (568)
                      -|.. ....+|++-+.|+     .|+||++..........++   +.+.    ....++.+++.+.+-      ..+|.|
T Consensus        71 L~~~-~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l------~~Iv~G  143 (933)
T KOG2114|consen   71 LYIL-NKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL------KTIVCG  143 (933)
T ss_pred             hhcc-cCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc------cEEEEE
Confidence            2331 2335777766665     4999999755332223344   2221    135678899999987      899999


Q ss_pred             cCCC-EEEEEC--C-CCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363          254 GHGG-LKFWDI--R-DPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH  329 (568)
Q Consensus       254 s~d~-v~lwD~--~-~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~  329 (568)
                      -.+| |.++.-  . ...........-..+|+.+++..++..++....-..|.+|.+.         |+.      ..+.
T Consensus       144 f~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~---------gr~------p~~~  208 (933)
T KOG2114|consen  144 FTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS---------GRT------PSLK  208 (933)
T ss_pred             ecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec---------CCC------ccee
Confidence            8899 877732  1 1112222233446789999999999885544555679999984         222      1134


Q ss_pred             EEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363          330 LVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       330 ~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~  367 (568)
                      .+..|...+.|..|++....++.++ +..|.+|+....
T Consensus       209 ~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~  245 (933)
T KOG2114|consen  209 VLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGR  245 (933)
T ss_pred             eeccCCccceeeecCCCCccEEEec-CceEEEEcCCCc
Confidence            5777888999999988765344444 457889988643

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=5.1e-05  Score=75.05  Aligned_cols=230  Identities=17%  Similarity=0.214  Sum_probs=151.5

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeC-CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeeccee
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLG-NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRC  170 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~-dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~  170 (568)
                      +..+.+|.+ ++.+++.+-++          -++.+.+. |..++++|+.+...+..+              ++      
T Consensus        46 VKhFraHL~-~I~sl~~S~dg----------~L~~Sv~d~Dhs~KvfDvEn~Dminmi--------------KL------   94 (558)
T KOG0882|consen   46 VKHFRAHLG-VILSLAVSYDG----------WLFRSVEDPDHSVKVFDVENFDMINMI--------------KL------   94 (558)
T ss_pred             hhhhHHHHH-HHHhhhccccc----------eeEeeccCcccceeEEEeeccchhhhc--------------cc------
Confidence            445677888 66688888888          68888777 999999999885544322              11      


Q ss_pred             cccccCCcCccceEEEEccCCCCC---EE-EEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCC
Q 008363          171 SMLKCGGTQSIPLTMEWSTSPPHD---YL-LAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDS  246 (568)
Q Consensus       171 ~~~~~~h~~~V~~~v~~s~~~~g~---~l-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~  246 (568)
                              ..+|-.+.|... .|.   .| ++.-.+|.|.++|-.....    +....-.-|..+|..+.+++.+     
T Consensus        95 --------~~lPg~a~wv~s-kGd~~s~IAVs~~~sg~i~VvD~~~d~~----q~~~fkklH~sPV~~i~y~qa~-----  156 (558)
T KOG0882|consen   95 --------VDLPGFAEWVTS-KGDKISLIAVSLFKSGKIFVVDGFGDFC----QDGYFKKLHFSPVKKIRYNQAG-----  156 (558)
T ss_pred             --------ccCCCceEEecC-CCCeeeeEEeecccCCCcEEECCcCCcC----ccceecccccCceEEEEeeccc-----
Confidence                    011344555433 231   33 3445689999999765411    3333445699999999999998     


Q ss_pred             CcEEEEEcCCC-EEEEECCCCCc-----ce---------eeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccccc
Q 008363          247 ANVILTAGHGG-LKFWDIRDPFR-----PL---------WDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAY  311 (568)
Q Consensus       247 ~~~las~s~d~-v~lwD~~~~~~-----~~---------~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~  311 (568)
                       ..++|....| |..|......+     ..         ..+.-......++.|+|++..+.+-+.|..|++++++    
T Consensus       157 -Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~K----  231 (558)
T KOG0882|consen  157 -DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFK----  231 (558)
T ss_pred             -cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEec----
Confidence             7888888888 99998874211     11         1112234556899999999999999999999999984    


Q ss_pred             CCCCCCCCccCcc------------ccceE------------EEecCCC-CEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          312 DVPATGKPFAGTK------------QQGLH------------LVNCSSF-AIWSVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       312 ~~~~~g~~~~~~~------------~~~l~------------~~~~h~~-~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                          +|+.+....            ...+.            .+..|.. .-+.+.|...+++|+.++-=| |++.++.+
T Consensus       232 ----tGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~t  306 (558)
T KOG0882|consen  232 ----TGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDT  306 (558)
T ss_pred             ----cchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeec
Confidence                344332000            00000            1112322 235678988899999998664 89999998


Q ss_pred             CeeeccCCCCCcce
Q 008363          367 KAVEKDHSRNRPMH  380 (568)
Q Consensus       367 ~~~~~~~~~~~~~~  380 (568)
                      ..+.+...+.....
T Consensus       307 n~v~ri~gk~e~ir  320 (558)
T KOG0882|consen  307 NTVVRILGKDEAIR  320 (558)
T ss_pred             CeEEEEeccchhhh
Confidence            88777655444333

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.94  E-value=0.0058  Score=59.43  Aligned_cols=206  Identities=14%  Similarity=0.111  Sum_probs=134.5

Q ss_pred             eEEEEccCCCCcccccCcccEEEEEeCCCc-EEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGS-LEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~-V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      +.++.+|..+         ..++.+-.-|+ ..+||..+++....+....                  -.++.||     
T Consensus         8 H~~a~~p~~~---------~avafaRRPG~~~~v~D~~~g~~~~~~~a~~------------------gRHFyGH-----   55 (305)
T PF07433_consen    8 HGVAAHPTRP---------EAVAFARRPGTFALVFDCRTGQLLQRLWAPP------------------GRHFYGH-----   55 (305)
T ss_pred             cceeeCCCCC---------eEEEEEeCCCcEEEEEEcCCCceeeEEcCCC------------------CCEEecC-----
Confidence            4677788554         67888887776 5689999988877653321                  1122444     


Q ss_pred             eEEEEccCCCCCEEEEEe-----CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC--
Q 008363          183 LTMEWSTSPPHDYLLAGC-----HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH--  255 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs-----~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~--  255 (568)
                        -.|+  ++|++|++.=     ..|.|-|||....     ...+..|..|.-.-..|.+.|++      ..|+.+..  
T Consensus        56 --g~fs--~dG~~LytTEnd~~~g~G~IgVyd~~~~-----~~ri~E~~s~GIGPHel~l~pDG------~tLvVANGGI  120 (305)
T PF07433_consen   56 --GVFS--PDGRLLYTTENDYETGRGVIGVYDAARG-----YRRIGEFPSHGIGPHELLLMPDG------ETLVVANGGI  120 (305)
T ss_pred             --EEEc--CCCCEEEEeccccCCCcEEEEEEECcCC-----cEEEeEecCCCcChhhEEEcCCC------CEEEEEcCCC
Confidence              3456  8999988853     3589999999833     36777888888888899999998      56665532  


Q ss_pred             ----------------CC-EEEEECCCCCcce--eee--CCCCCCeEEEEEcCCCCEEEEEeCCCc-------EEEEEcc
Q 008363          256 ----------------GG-LKFWDIRDPFRPL--WDI--HPAPKFIYGLDWLPDPGCVILSFDDGA-------MRIVSLL  307 (568)
Q Consensus       256 ----------------d~-v~lwD~~~~~~~~--~~~--~~h~~~i~~l~~sp~~~~l~s~~~dg~-------I~lwd~~  307 (568)
                                      +- +.+.|..++ ..+  ..+  .-|.-.|..|++.++|..++..-..|.       |.+++. 
T Consensus       121 ~Thpd~GR~kLNl~tM~psL~~ld~~sG-~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~-  198 (305)
T PF07433_consen  121 ETHPDSGRAKLNLDTMQPSLVYLDARSG-ALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR-  198 (305)
T ss_pred             ccCcccCceecChhhcCCceEEEecCCC-ceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC-
Confidence                            11 334455555 322  234  346778899999999886666544332       344433 


Q ss_pred             ccccCCCCCCCCccCccccceE----EEecCCCCEEEEEEecCCCEE-EEEeCCCeEEEEEcCCCeeecc
Q 008363          308 KAAYDVPATGKPFAGTKQQGLH----LVNCSSFAIWSVQVSRLTGMV-AYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       308 ~~~~~~~~~g~~~~~~~~~~l~----~~~~h~~~V~~l~~sp~~~~l-~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                               |..+     +.+.    ....-.+-|-+|++++++.++ +|+-.-+.+.+||..++.+...
T Consensus       199 ---------g~~~-----~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~  254 (305)
T PF07433_consen  199 ---------GGAL-----RLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGS  254 (305)
T ss_pred             ---------CCcc-----eeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeec
Confidence                     2211     0000    112234567899999998766 5555778899999999887654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.93  E-value=0.0049  Score=58.91  Aligned_cols=183  Identities=21%  Similarity=0.194  Sum_probs=108.1

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD  202 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D  202 (568)
                      +.+++++.++.|..||..+|+.+-.+...                           ..+.....    ..+..+++++.|
T Consensus        37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~~---------------------------~~~~~~~~----~~~~~v~v~~~~   85 (238)
T PF13360_consen   37 GRVYVASGDGNLYALDAKTGKVLWRFDLP---------------------------GPISGAPV----VDGGRVYVGTSD   85 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSEEEEEEECS---------------------------SCGGSGEE----EETTEEEEEETT
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEeecc---------------------------ccccceee----ecccccccccce
Confidence            57777889999999999998877554211                           11001111    234577888889


Q ss_pred             CeEEEEEccCCCCCCCCceeEEe-eCCC---CCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCC
Q 008363          203 GTVALWKFVASDSSIDSRPLLCF-SADT---LPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAP  277 (568)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~-~~h~---~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~  277 (568)
                      +.|..+|..++      +.+..+ ....   ...........+      ..++.+..++ |..+|+.++ ..++......
T Consensus        86 ~~l~~~d~~tG------~~~W~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~g~l~~~d~~tG-~~~w~~~~~~  152 (238)
T PF13360_consen   86 GSLYALDAKTG------KVLWSIYLTSSPPAGVRSSSSPAVDG------DRLYVGTSSGKLVALDPKTG-KLLWKYPVGE  152 (238)
T ss_dssp             SEEEEEETTTS------CEEEEEEE-SSCTCSTB--SEEEEET------TEEEEEETCSEEEEEETTTT-EEEEEEESST
T ss_pred             eeeEecccCCc------ceeeeeccccccccccccccCceEec------CEEEEEeccCcEEEEecCCC-cEEEEeecCC
Confidence            99999998877      555552 2221   111222222224      5666666566 999999988 6665554332


Q ss_pred             CC----------eEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC
Q 008363          278 KF----------IYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT  347 (568)
Q Consensus       278 ~~----------i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~  347 (568)
                      ..          +..-....++ .++.++.++.+..+|+.        +|+.+          +......+.. .....+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~--------tg~~~----------w~~~~~~~~~-~~~~~~  212 (238)
T PF13360_consen  153 PRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLA--------TGEKL----------WSKPISGIYS-LPSVDG  212 (238)
T ss_dssp             T-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETT--------TTEEE----------EEECSS-ECE-CEECCC
T ss_pred             CCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECC--------CCCEE----------EEecCCCccC-CceeeC
Confidence            11          1222222244 77777777754344884        34321          1211222222 144567


Q ss_pred             CEEEEEeCCCeEEEEEcCCCee
Q 008363          348 GMVAYCSADGTVHRFQLTAKAV  369 (568)
Q Consensus       348 ~~l~s~s~Dg~v~iwd~~~~~~  369 (568)
                      ..|+.++.++.|..||+.+++.
T Consensus       213 ~~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  213 GTLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             TEEEEEETTTEEEEEETTTTEE
T ss_pred             CEEEEEeCCCEEEEEECCCCCE
Confidence            8888888999999999998865

...

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.90  E-value=0.017  Score=58.11  Aligned_cols=207  Identities=9%  Similarity=-0.002  Sum_probs=121.8

Q ss_pred             CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeC----------
Q 008363          132 GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH----------  201 (568)
Q Consensus       132 g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~----------  201 (568)
                      ++|.+.|..+++.+.++..                         |..   |..+ .+  |+|+.|+++..          
T Consensus        27 ~~v~ViD~~~~~v~g~i~~-------------------------G~~---P~~~-~s--pDg~~lyva~~~~~R~~~G~~   75 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDG-------------------------GFL---PNPV-VA--SDGSFFAHASTVYSRIARGKR   75 (352)
T ss_pred             ceEEEEECCCCEEEEEEEc-------------------------cCC---Ccee-EC--CCCCEEEEEeccccccccCCC
Confidence            8999999999888776521                         111   1223 55  88888777665          


Q ss_pred             CCeEEEEEccCCCCCCCCceeEEeeCC-------CCCeeEEEEccCCCCCCCCcEEEEEcC--CC-EEEEECCCCCccee
Q 008363          202 DGTVALWKFVASDSSIDSRPLLCFSAD-------TLPIRAVSWAPAESDSDSANVILTAGH--GG-LKFWDIRDPFRPLW  271 (568)
Q Consensus       202 Dg~I~iwd~~~~~~~~~~~~~~~~~~h-------~~~V~~v~~~p~~~~~~~~~~las~s~--d~-v~lwD~~~~~~~~~  271 (568)
                      +..|.+||+.+.      +.+..+.--       ......++++|+|      ++|+....  +. |.+.|+.+. +.+.
T Consensus        76 ~d~V~v~D~~t~------~~~~~i~~p~~p~~~~~~~~~~~~ls~dg------k~l~V~n~~p~~~V~VvD~~~~-kvv~  142 (352)
T TIGR02658        76 TDYVEVIDPQTH------LPIADIELPEGPRFLVGTYPWMTSLTPDN------KTLLFYQFSPSPAVGVVDLEGK-AFVR  142 (352)
T ss_pred             CCEEEEEECccC------cEEeEEccCCCchhhccCccceEEECCCC------CEEEEecCCCCCEEEEEECCCC-cEEE
Confidence            789999999977      666555321       1223478899999      77776653  45 999999876 3222


Q ss_pred             eeCCC------------------CC-------------CeEEE--------------EEcC-CCCEEEEEeCCCcEEEEE
Q 008363          272 DIHPA------------------PK-------------FIYGL--------------DWLP-DPGCVILSFDDGAMRIVS  305 (568)
Q Consensus       272 ~~~~h------------------~~-------------~i~~l--------------~~sp-~~~~l~s~~~dg~I~lwd  305 (568)
                      .+..-                  .+             .+...              .|.+ +|++++.+.. |+|++.|
T Consensus       143 ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id  221 (352)
T TIGR02658       143 MMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQID  221 (352)
T ss_pred             EEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEe
Confidence            22100                  00             00010              1223 6666666555 7787777


Q ss_pred             ccccccCCCCCCCCccCccccceEEEe-------cCCCCEEEEEEecCCCEEEEEe----------CCCeEEEEEcCCCe
Q 008363          306 LLKAAYDVPATGKPFAGTKQQGLHLVN-------CSSFAIWSVQVSRLTGMVAYCS----------ADGTVHRFQLTAKA  368 (568)
Q Consensus       306 ~~~~~~~~~~~g~~~~~~~~~~l~~~~-------~h~~~V~~l~~sp~~~~l~s~s----------~Dg~v~iwd~~~~~  368 (568)
                      +....-   ...        ..+..+.       ...+.+.-++++++++.|+...          ..+.|.++|..+.+
T Consensus       222 ~~~~~~---~~~--------~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k  290 (352)
T TIGR02658       222 LSSGDA---KFL--------PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK  290 (352)
T ss_pred             cCCCcc---eec--------ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe
Confidence            532110   001        1111111       1223334589999998777743          22579999999988


Q ss_pred             eeccCCCCCcceeeeecccCCCC-ceEEc
Q 008363          369 VEKDHSRNRPMHFLCGSVTEDES-AITVN  396 (568)
Q Consensus       369 ~~~~~~~~~~~~~~~~s~~~~~~-~i~~~  396 (568)
                      ......-...++-+  .+++|+. .+.+.
T Consensus       291 vi~~i~vG~~~~~i--avS~Dgkp~lyvt  317 (352)
T TIGR02658       291 RLRKIELGHEIDSI--NVSQDAKPLLYAL  317 (352)
T ss_pred             EEEEEeCCCceeeE--EECCCCCeEEEEe
Confidence            77654433334333  5788888 55543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.89  E-value=0.013  Score=56.59  Aligned_cols=139  Identities=11%  Similarity=0.104  Sum_probs=87.9

Q ss_pred             ceEEEEccCCCCCEEEEEeCC--------CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE-E
Q 008363          182 PLTMEWSTSPPHDYLLAGCHD--------GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL-T  252 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~D--------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la-s  252 (568)
                      +..+++.  ++|++.++....        |.|..++.. +      +..... ..-...+.|+|+|++      +.|+ +
T Consensus        88 ~ND~~vd--~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~------~~~~~~-~~~~~pNGi~~s~dg------~~lyv~  151 (246)
T PF08450_consen   88 PNDVAVD--PDGNLYVTDSGGGGASGIDPGSVYRIDPD-G------KVTVVA-DGLGFPNGIAFSPDG------KTLYVA  151 (246)
T ss_dssp             EEEEEE---TTS-EEEEEECCBCTTCGGSEEEEEEETT-S------EEEEEE-EEESSEEEEEEETTS------SEEEEE
T ss_pred             CceEEEc--CCCCEEEEecCCCccccccccceEEECCC-C------eEEEEe-cCcccccceEECCcc------hheeec
Confidence            4778877  889877776644        456666655 3      222222 234557899999998      5554 5


Q ss_pred             EcCCC-EEEEECCCCCc------ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccc
Q 008363          253 AGHGG-LKFWDIRDPFR------PLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQ  325 (568)
Q Consensus       253 ~s~d~-v~lwD~~~~~~------~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~  325 (568)
                      -+..+ |..+|+.....      .+..+....+..-.+++..+|+..++....+.|.++|.         .|+.+     
T Consensus       152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p---------~G~~~-----  217 (246)
T PF08450_consen  152 DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDP---------DGKLL-----  217 (246)
T ss_dssp             ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEET---------TSCEE-----
T ss_pred             ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECC---------CccEE-----
Confidence            55566 99999864422      12223322334788999999998888788999999998         36543     


Q ss_pred             cceEEEecCCCCEEEEEEe-cCCCEEEEE
Q 008363          326 QGLHLVNCSSFAIWSVQVS-RLTGMVAYC  353 (568)
Q Consensus       326 ~~l~~~~~h~~~V~~l~~s-p~~~~l~s~  353 (568)
                         ..+......+++++|. ++...|+..
T Consensus       218 ---~~i~~p~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  218 ---REIELPVPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             ---EEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred             ---EEEcCCCCCEEEEEEECCCCCEEEEE
Confidence               4555444588999995 555544443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.88  E-value=0.0015  Score=69.56  Aligned_cols=142  Identities=18%  Similarity=0.283  Sum_probs=95.4

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccC---CCCCEEEEE
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTS---PPHDYLLAG  199 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~---~~g~~l~sg  199 (568)
                      .++++|+.||+|.|-.+.+.+....+                           ....++ .+|+++|.   ...+++++|
T Consensus        84 ey~asCS~DGkv~I~sl~~~~~~~~~---------------------------df~rpi-ksial~Pd~~~~~sk~fv~G  135 (846)
T KOG2066|consen   84 EYVASCSDDGKVVIGSLFTDDEITQY---------------------------DFKRPI-KSIALHPDFSRQQSKQFVSG  135 (846)
T ss_pred             ceEEEecCCCcEEEeeccCCccceeE---------------------------ecCCcc-eeEEeccchhhhhhhheeec
Confidence            79999999999999998886655432                           223444 78887743   225689999


Q ss_pred             eCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcceeeeC-CCC-
Q 008363          200 CHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIH-PAP-  277 (568)
Q Consensus       200 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~~~~~-~h~-  277 (568)
                      +.-| +.++.-+   +......+ .+..-.++|.++.|..        ++||-++++||++||+... +.+..+. .+. 
T Consensus       136 G~ag-lvL~er~---wlgnk~~v-~l~~~eG~I~~i~W~g--------~lIAWand~Gv~vyd~~~~-~~l~~i~~p~~~  201 (846)
T KOG2066|consen  136 GMAG-LVLSERN---WLGNKDSV-VLSEGEGPIHSIKWRG--------NLIAWANDDGVKVYDTPTR-QRLTNIPPPSQS  201 (846)
T ss_pred             Ccce-EEEehhh---hhcCccce-eeecCccceEEEEecC--------cEEEEecCCCcEEEecccc-ceeeccCCCCCC
Confidence            9988 7776532   11111222 3455678999999974        5999999999999999876 4443332 221 


Q ss_pred             ----CCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363          278 ----KFIYGLDWLPDPGCVILSFDDGAMRIVSLLK  308 (568)
Q Consensus       278 ----~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~  308 (568)
                          ..-..+.|.++.+ |+.| ...+|+|..++.
T Consensus       202 ~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~~  234 (846)
T KOG2066|consen  202 VRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIKK  234 (846)
T ss_pred             CCcccCCCceEecCCCe-EEEe-cCCeEEEEEEec
Confidence                1124688887654 5555 444789998873

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.85  E-value=0.0019  Score=71.77  Aligned_cols=205  Identities=12%  Similarity=0.133  Sum_probs=127.2

Q ss_pred             ceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCc
Q 008363          101 KVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQS  180 (568)
Q Consensus       101 ~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~  180 (568)
                      .++ ++.|.-+.          ..|+.+..+|.|.+-|..+......                           ..-...
T Consensus        70 ~i~-s~~fl~d~----------~~i~v~~~~G~iilvd~et~~~eiv---------------------------g~vd~G  111 (1265)
T KOG1920|consen   70 EIV-SVQFLADT----------NSICVITALGDIILVDPETLELEIV---------------------------GNVDNG  111 (1265)
T ss_pred             ceE-EEEEeccc----------ceEEEEecCCcEEEEcccccceeee---------------------------eeccCc
Confidence            355 89999888          7888889999999998877332211                           122345


Q ss_pred             cceEEEEccCCCCCEEEEEeCCCeEEEEEc----cCCCCC-------------CCCceeEEeeCCC--------------
Q 008363          181 IPLTMEWSTSPPHDYLLAGCHDGTVALWKF----VASDSS-------------IDSRPLLCFSADT--------------  229 (568)
Q Consensus       181 V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~----~~~~~~-------------~~~~~~~~~~~h~--------------  229 (568)
                      | .+++|+  ||++.++..+.++++.+-+-    -.....             .-++....|.|..              
T Consensus       112 I-~aaswS--~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~  188 (1265)
T KOG1920|consen  112 I-SAASWS--PDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKA  188 (1265)
T ss_pred             e-EEEeec--CCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccc
Confidence            6 889999  88999999998888876543    111100             0001111222111              


Q ss_pred             -------CCeeEEEEccCCCCCCCCcEEEEEc----CC-C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEE-
Q 008363          230 -------LPIRAVSWAPAESDSDSANVILTAG----HG-G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS-  295 (568)
Q Consensus       230 -------~~V~~v~~~p~~~~~~~~~~las~s----~d-~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~-  295 (568)
                             +.=.+|.|--+|      .+||+..    .| . |++||........  -....+--.+++|-|.|..+++- 
T Consensus       189 ~~~~~~~~~~~~IsWRgDg------~~fAVs~~~~~~~~RkirV~drEg~Lns~--se~~~~l~~~LsWkPsgs~iA~iq  260 (1265)
T KOG1920|consen  189 LEQIEQDDHKTSISWRGDG------EYFAVSFVESETGTRKIRVYDREGALNST--SEPVEGLQHSLSWKPSGSLIAAIQ  260 (1265)
T ss_pred             ccchhhccCCceEEEccCC------cEEEEEEEeccCCceeEEEecccchhhcc--cCcccccccceeecCCCCeEeeee
Confidence                   112358999998      8988842    24 4 9999987221111  11112223689999999998886 


Q ss_pred             --eCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEE---EeCCCeEEEEEcCCC
Q 008363          296 --FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAY---CSADGTVHRFQLTAK  367 (568)
Q Consensus       296 --~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s---~s~Dg~v~iwd~~~~  367 (568)
                        +.|+.|.+|...-..     .|+..        ..+......|..++|+.++..|++   +.....|++|-+.+-
T Consensus       261 ~~~sd~~IvffErNGL~-----hg~f~--------l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  261 CKTSDSDIVFFERNGLR-----HGEFV--------LPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             ecCCCCcEEEEecCCcc-----ccccc--------cCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence              347789999863221     12111        112223344899999999998888   455556999988654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.81  E-value=0.0019  Score=65.89  Aligned_cols=178  Identities=11%  Similarity=0.219  Sum_probs=112.9

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT  184 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~  184 (568)
                      -+.|||.|          .+|++--.-| |.+|--.+...++.+                           .|.+ | .-
T Consensus       215 yv~wSP~G----------TYL~t~Hk~G-I~lWGG~~f~r~~RF---------------------------~Hp~-V-q~  254 (698)
T KOG2314|consen  215 YVRWSPKG----------TYLVTFHKQG-IALWGGESFDRIQRF---------------------------YHPG-V-QF  254 (698)
T ss_pred             eEEecCCc----------eEEEEEeccc-eeeecCccHHHHHhc---------------------------cCCC-c-ee
Confidence            58999999          7999887766 889987775555443                           2333 2 56


Q ss_pred             EEEccCCCCCEEEEEeC-----------CCeEEEEEccCCCCCCCCceeEEeeC---CCCCeeEEEEccCCCCCCCCcEE
Q 008363          185 MEWSTSPPHDYLLAGCH-----------DGTVALWKFVASDSSIDSRPLLCFSA---DTLPIRAVSWAPAESDSDSANVI  250 (568)
Q Consensus       185 v~~s~~~~g~~l~sgs~-----------Dg~I~iwd~~~~~~~~~~~~~~~~~~---h~~~V~~v~~~p~~~~~~~~~~l  250 (568)
                      ++||  |...+|++=+.           -..++|||+.++      ...+.|..   ....-.-+.|+.++      +++
T Consensus       255 idfS--P~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG------~lkrsF~~~~~~~~~WP~frWS~Dd------Ky~  320 (698)
T KOG2314|consen  255 IDFS--PNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG------LLKRSFPVIKSPYLKWPIFRWSHDD------KYF  320 (698)
T ss_pred             eecC--CccceEEEecCCccccCcccCCCceEEEEEcccc------chhcceeccCCCccccceEEeccCC------cee
Confidence            7888  66778887543           257999999988      44444433   12222346899998      899


Q ss_pred             EEEcCCCEEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEEccccccCCCCCCCCccCccc
Q 008363          251 LTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-----DGAMRIVSLLKAAYDVPATGKPFAGTKQ  325 (568)
Q Consensus       251 as~s~d~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-----dg~I~lwd~~~~~~~~~~~g~~~~~~~~  325 (568)
                      |--..++|.||+..+- ..+..-.-....|....|+|.+..|+.=..     -..+.|..+.+        +        
T Consensus       321 Arm~~~sisIyEtpsf-~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs--------~--------  383 (698)
T KOG2314|consen  321 ARMTGNSISIYETPSF-MLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPS--------K--------  383 (698)
T ss_pred             EEeccceEEEEecCce-eeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCc--------c--------
Confidence            9888888999997753 333111122456888999999887765322     12344444421        2        


Q ss_pred             cceEEEecCCCCEEEEEEecCCCEEEEE
Q 008363          326 QGLHLVNCSSFAIWSVQVSRLTGMVAYC  353 (568)
Q Consensus       326 ~~l~~~~~h~~~V~~l~~sp~~~~l~s~  353 (568)
                      +.+++-.-|.-.=..|.|-.+|.+|+.-
T Consensus       384 ~~iRt~nlfnVsDckLhWQk~gdyLcvk  411 (698)
T KOG2314|consen  384 REIRTKNLFNVSDCKLHWQKSGDYLCVK  411 (698)
T ss_pred             ceeeeccceeeeccEEEeccCCcEEEEE
Confidence            1223333333333456777778877653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.73  E-value=0.0056  Score=63.23  Aligned_cols=133  Identities=17%  Similarity=0.137  Sum_probs=82.7

Q ss_pred             CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCccee
Q 008363          193 HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLW  271 (568)
Q Consensus       193 g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~  271 (568)
                      +..+++++.+|.+..||..++      +.+..... . .......  .+      ..++.++.++ |..+|..++ ..++
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG------~~~W~~~~-~-~~~~p~~--~~------~~vyv~~~~G~l~~~d~~tG-~~~W  303 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSG------RVLWKRDA-S-SYQGPAV--DD------NRLYVTDADGVVVALDRRSG-SELW  303 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCC------cEEEeecc-C-CccCceE--eC------CEEEEECCCCeEEEEECCCC-cEEE
Confidence            458888888999999999876      44433321 1 1122222  23      4666667777 999999877 5555


Q ss_pred             eeCCCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE-EEEecCCCE
Q 008363          272 DIHPAPK-FIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS-VQVSRLTGM  349 (568)
Q Consensus       272 ~~~~h~~-~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~-l~~sp~~~~  349 (568)
                      ....... ...+...  .+..|++++.+|.|+++|..        +|+.+        ..+..+...+.. ..+.  +..
T Consensus       304 ~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~--------tG~~~--------~~~~~~~~~~~~sp~~~--~~~  363 (377)
T TIGR03300       304 KNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRE--------DGSFV--------ARLKTDGSGIASPPVVV--GDG  363 (377)
T ss_pred             ccccccCCccccCEE--ECCEEEEEeCCCEEEEEECC--------CCCEE--------EEEEcCCCccccCCEEE--CCE
Confidence            4422111 1222222  36789999999999999984        46554        355545433322 2232  345


Q ss_pred             EEEEeCCCeEEEE
Q 008363          350 VAYCSADGTVHRF  362 (568)
Q Consensus       350 l~s~s~Dg~v~iw  362 (568)
                      |+.++.||.|+.|
T Consensus       364 l~v~~~dG~l~~~  376 (377)
T TIGR03300       364 LLVQTRDGDLYAF  376 (377)
T ss_pred             EEEEeCCceEEEe
Confidence            8899999999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.71  E-value=1.1e-05  Score=82.92  Aligned_cols=158  Identities=16%  Similarity=0.215  Sum_probs=112.5

Q ss_pred             cCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC--
Q 008363          178 TQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH--  255 (568)
Q Consensus       178 ~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~--  255 (568)
                      +..+ .|++|+-..+..++++|..+|.|.+-.++....    .-.....+|..++++++|++-..     ++||.|-.  
T Consensus        56 tqy~-kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd----Ss~E~tp~~ar~Ct~lAwneLDt-----n~LAagldkh  125 (783)
T KOG1008|consen   56 TQYV-KCVASFYGNDRCILAVGSATGNISLLSVRHPHD----SSAEVTPGYARPCTSLAWNELDT-----NHLAAGLDKH  125 (783)
T ss_pred             CCCc-eeehhhcCCchhhhhhccccCceEEeecCCccc----ccceecccccccccccccccccH-----HHHHhhhhhh
Confidence            3445 788887555555889999999999999886532    22334567888999999999863     68887743  


Q ss_pred             --CC-EEEEECCCCC-cce--eeeCC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363          256 --GG-LKFWDIRDPF-RPL--WDIHP-APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       256 --d~-v~lwD~~~~~-~~~--~~~~~-h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                        |. +.|||+.+.. .|.  ..+.+ ......+++|..+.+.+++|.....|.++|+|..-                 .
T Consensus       126 rnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-----------------~  188 (783)
T KOG1008|consen  126 RNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-----------------D  188 (783)
T ss_pred             cccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-----------------h
Confidence              45 9999998763 111  12222 33456799999999999999999999999997311                 1


Q ss_pred             EEEecCCCCEEEEEEec-CCCEEEEEeCCCeEEEEE
Q 008363          329 HLVNCSSFAIWSVQVSR-LTGMVAYCSADGTVHRFQ  363 (568)
Q Consensus       329 ~~~~~h~~~V~~l~~sp-~~~~l~s~s~Dg~v~iwd  363 (568)
                      ......+..|..+.+.| .+.|+++-. ||.|.+||
T Consensus       189 ~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD  223 (783)
T KOG1008|consen  189 SVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWD  223 (783)
T ss_pred             hhhhhhhhhcccceecCCCCCceeccc-cCceeecc
Confidence            11122334566778888 467887776 99999999

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.70  E-value=0.00075  Score=71.89  Aligned_cols=68  Identities=19%  Similarity=0.431  Sum_probs=58.4

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW  261 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw  261 (568)
                      ++++|+  |..-.|+.|-.-|.+.+|...+.      +.-.....|..+|..+.|+++|      ..++|+..-| |.+|
T Consensus        63 tSLCWH--pe~~vLa~gwe~g~~~v~~~~~~------e~htv~~th~a~i~~l~wS~~G------~~l~t~d~~g~v~lw  128 (1416)
T KOG3617|consen   63 TSLCWH--PEEFVLAQGWEMGVSDVQKTNTT------ETHTVVETHPAPIQGLDWSHDG------TVLMTLDNPGSVHLW  128 (1416)
T ss_pred             hhhccC--hHHHHHhhccccceeEEEecCCc------eeeeeccCCCCCceeEEecCCC------CeEEEcCCCceeEEE
Confidence            789999  66678899999999999998765      4445556799999999999999      8999999988 9999


Q ss_pred             ECC
Q 008363          262 DIR  264 (568)
Q Consensus       262 D~~  264 (568)
                      ...
T Consensus       129 r~d  131 (1416)
T KOG3617|consen  129 RYD  131 (1416)
T ss_pred             Eee
Confidence            765

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.66  E-value=0.0023  Score=68.33  Aligned_cols=68  Identities=22%  Similarity=0.334  Sum_probs=58.9

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT  184 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~  184 (568)
                      +++|+|..          -+|+.|-.-|.+.+|...+.+.....                          ..|...| ..
T Consensus        64 SLCWHpe~----------~vLa~gwe~g~~~v~~~~~~e~htv~--------------------------~th~a~i-~~  106 (1416)
T KOG3617|consen   64 SLCWHPEE----------FVLAQGWEMGVSDVQKTNTTETHTVV--------------------------ETHPAPI-QG  106 (1416)
T ss_pred             hhccChHH----------HHHhhccccceeEEEecCCceeeeec--------------------------cCCCCCc-ee
Confidence            79999998          78999999999999998874433222                          6789999 99


Q ss_pred             EEEccCCCCCEEEEEeCCCeEEEEEcc
Q 008363          185 MEWSTSPPHDYLLAGCHDGTVALWKFV  211 (568)
Q Consensus       185 v~~s~~~~g~~l~sgs~Dg~I~iwd~~  211 (568)
                      ++|+  ++|..++++..-|.|.+|...
T Consensus       107 l~wS--~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen  107 LDWS--HDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             EEec--CCCCeEEEcCCCceeEEEEee
Confidence            9999  899999999999999999876

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.66  E-value=0.021  Score=60.77  Aligned_cols=103  Identities=14%  Similarity=0.070  Sum_probs=65.9

Q ss_pred             EEEEECCC----CCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363          258 LKFWDIRD----PFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN  332 (568)
Q Consensus       258 v~lwD~~~----~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~  332 (568)
                      |.+.|.++    ....+..+ .-......+.++|||+++++++. +.+|.|+|+.+...-.  .++.  ......+....
T Consensus       298 V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~--~~~~--~~~~~vvaeve  372 (635)
T PRK02888        298 VPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF--DGKI--KPRDAVVAEPE  372 (635)
T ss_pred             EEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh--hccC--CccceEEEeec
Confidence            77778776    22333333 22444578999999999998866 9999999997644100  0110  00001112233


Q ss_pred             cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          333 CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       333 ~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                      .-.++ ...+|.++|....|.-.|..|..|++..
T Consensus       373 vGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        373 LGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             cCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence            22333 4578999999889999999999999976

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.57  E-value=0.01  Score=56.72  Aligned_cols=179  Identities=17%  Similarity=0.155  Sum_probs=103.3

Q ss_pred             CCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEE
Q 008363          130 GNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWK  209 (568)
Q Consensus       130 ~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd  209 (568)
                      .+|+|..||..+++.+-.....                       ......  .+...   +++..+++++.++.|..||
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~-----------------------~~~~~~--~~~~~---~~~~~v~~~~~~~~l~~~d   52 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLG-----------------------PGIGGP--VATAV---PDGGRVYVASGDGNLYALD   52 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECS-----------------------SSCSSE--EETEE---EETTEEEEEETTSEEEEEE
T ss_pred             CCCEEEEEECCCCCEEEEEECC-----------------------CCCCCc--cceEE---EeCCEEEEEcCCCEEEEEE
Confidence            3688999999998877554110                       011111  11121   2456888889999999999


Q ss_pred             ccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeee-CCC--C-CCeEEEE
Q 008363          210 FVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDI-HPA--P-KFIYGLD  284 (568)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~-~~h--~-~~i~~l~  284 (568)
                      ..++      +.+..+.. ...+........+       .++.+..++ |+.+|..++ ..++.. ...  . .....+.
T Consensus        53 ~~tG------~~~W~~~~-~~~~~~~~~~~~~-------~v~v~~~~~~l~~~d~~tG-~~~W~~~~~~~~~~~~~~~~~  117 (238)
T PF13360_consen   53 AKTG------KVLWRFDL-PGPISGAPVVDGG-------RVYVGTSDGSLYALDAKTG-KVLWSIYLTSSPPAGVRSSSS  117 (238)
T ss_dssp             TTTS------EEEEEEEC-SSCGGSGEEEETT-------EEEEEETTSEEEEEETTTS-CEEEEEEE-SSCTCSTB--SE
T ss_pred             CCCC------CEEEEeec-cccccceeeeccc-------ccccccceeeeEecccCCc-ceeeeeccccccccccccccC
Confidence            9877      66665544 2322222223333       455555666 999999988 666553 211  1 1122233


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCC----------EEEEEEecCCCEEEEEe
Q 008363          285 WLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFA----------IWSVQVSRLTGMVAYCS  354 (568)
Q Consensus       285 ~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~----------V~~l~~sp~~~~l~s~s  354 (568)
                      ...++..++++..++.|+.+|++        +|+.++        .+......          +..-....++ .++.++
T Consensus       118 ~~~~~~~~~~~~~~g~l~~~d~~--------tG~~~w--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~  180 (238)
T PF13360_consen  118 PAVDGDRLYVGTSSGKLVALDPK--------TGKLLW--------KYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSS  180 (238)
T ss_dssp             EEEETTEEEEEETCSEEEEEETT--------TTEEEE--------EEESSTT-SS--EEEETTEEEEEECCTT-EEEEEC
T ss_pred             ceEecCEEEEEeccCcEEEEecC--------CCcEEE--------EeecCCCCCCcceeeecccccceEEECC-EEEEEc
Confidence            33348888999889999999984        475542        33332211          1222222234 777777


Q ss_pred             CCCeEEEEEcCCCe
Q 008363          355 ADGTVHRFQLTAKA  368 (568)
Q Consensus       355 ~Dg~v~iwd~~~~~  368 (568)
                      .++.+..+|+.+++
T Consensus       181 ~~g~~~~~d~~tg~  194 (238)
T PF13360_consen  181 GDGRVVAVDLATGE  194 (238)
T ss_dssp             CTSSEEEEETTTTE
T ss_pred             CCCeEEEEECCCCC
Confidence            78864444998887

...

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.56  E-value=0.0072  Score=67.41  Aligned_cols=151  Identities=11%  Similarity=0.184  Sum_probs=90.9

Q ss_pred             eEEEEccCCCCCEEEEEe----CC-CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC--
Q 008363          183 LTMEWSTSPPHDYLLAGC----HD-GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH--  255 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs----~D-g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~--  255 (568)
                      ++|.|-  -||+++|+..    .+ ..|++||-. +.++....+      -.+.=.+++|-|.|      .++|+...  
T Consensus       199 ~~IsWR--gDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~------~~~l~~~LsWkPsg------s~iA~iq~~~  263 (1265)
T KOG1920|consen  199 TSISWR--GDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEP------VEGLQHSLSWKPSG------SLIAAIQCKT  263 (1265)
T ss_pred             ceEEEc--cCCcEEEEEEEeccCCceeEEEeccc-chhhcccCc------ccccccceeecCCC------CeEeeeeecC
Confidence            578999  8999998832    23 799999977 322111122      22334678999998      78888643  


Q ss_pred             -CC-EEEEECCCCCcceeee--CCCCCCeEEEEEcCCCCEEEE---EeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363          256 -GG-LKFWDIRDPFRPLWDI--HPAPKFIYGLDWLPDPGCVIL---SFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       256 -d~-v~lwD~~~~~~~~~~~--~~h~~~i~~l~~sp~~~~l~s---~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                       +. |.++.-..-...-..+  ......|..++|+.++..|++   ......|++|-+.+..        .+    ++  
T Consensus       264 sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh--------WY----LK--  329 (1265)
T KOG1920|consen  264 SDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH--------WY----LK--  329 (1265)
T ss_pred             CCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE--------EE----EE--
Confidence             34 9998765432221121  122333899999999998888   3445559999884421        00    01  


Q ss_pred             EEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEc
Q 008363          329 HLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQL  364 (568)
Q Consensus       329 ~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~  364 (568)
                      ..+.-.....  +.|+|.. ..|..-..+|...++++
T Consensus       330 q~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  330 QELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             EEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence            1122122222  7788864 34444446777777666

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.56  E-value=0.022  Score=55.51  Aligned_cols=182  Identities=13%  Similarity=0.118  Sum_probs=106.6

Q ss_pred             EEEccCCCCcccccCcccEEEEEe-----CCCcEEEEECC-CCceeeEEeccCCccCCCCceEEEeecceecccccCCcC
Q 008363          106 VKWKPYNAVDCKCKQRLGYLAVLL-----GNGSLEVWEVP-LLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ  179 (568)
Q Consensus       106 v~~sp~~~~~~~~~~~~~~las~s-----~dg~V~iwd~~-~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~  179 (568)
                      -.|+|+|          .+|++.-     ..|.|-|||.. +.+.+..+                          ..|--
T Consensus        56 g~fs~dG----------~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~--------------------------~s~GI   99 (305)
T PF07433_consen   56 GVFSPDG----------RLLYTTENDYETGRGVIGVYDAARGYRRIGEF--------------------------PSHGI   99 (305)
T ss_pred             EEEcCCC----------CEEEEeccccCCCcEEEEEEECcCCcEEEeEe--------------------------cCCCc
Confidence            4699999          6777753     45899999999 44555444                          22221


Q ss_pred             ccceEEEEccCCCCCEEEEEeC------------------CCeEEEEEccCCCCCCCCceeEE--e--eCCCCCeeEEEE
Q 008363          180 SIPLTMEWSTSPPHDYLLAGCH------------------DGTVALWKFVASDSSIDSRPLLC--F--SADTLPIRAVSW  237 (568)
Q Consensus       180 ~V~~~v~~s~~~~g~~l~sgs~------------------Dg~I~iwd~~~~~~~~~~~~~~~--~--~~h~~~V~~v~~  237 (568)
                      . |-.+.|.  |+|..|+++--                  +-.+...|..++      ..+..  +  .-|.-.|+-+++
T Consensus       100 G-PHel~l~--pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG------~ll~q~~Lp~~~~~lSiRHLa~  170 (305)
T PF07433_consen  100 G-PHELLLM--PDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG------ALLEQVELPPDLHQLSIRHLAV  170 (305)
T ss_pred             C-hhhEEEc--CCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC------ceeeeeecCccccccceeeEEe
Confidence            2 3566777  77867766531                  223444444444      33433  4  337778999999


Q ss_pred             ccCCCCCCCCcEEEEEcC-----CC---EEEEECCCCCccee----eeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEE
Q 008363          238 APAESDSDSANVILTAGH-----GG---LKFWDIRDPFRPLW----DIHPAPKFIYGLDWLPDPGCVILSFD-DGAMRIV  304 (568)
Q Consensus       238 ~p~~~~~~~~~~las~s~-----d~---v~lwD~~~~~~~~~----~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lw  304 (568)
                      .++|      ..++..-.     +.   |-+++.......+.    ....-.+.|-+|++++++.++++++- .+.+.+|
T Consensus       171 ~~~G------~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~  244 (305)
T PF07433_consen  171 DGDG------TVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW  244 (305)
T ss_pred             cCCC------cEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence            9998      44444322     11   44554443211110    11233578899999999998877654 7889999


Q ss_pred             EccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCe
Q 008363          305 SLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGT  358 (568)
Q Consensus       305 d~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~  358 (568)
                      |..        +|+++.        ..  .-..+..++..+++ ++++.+ .|.
T Consensus       245 d~~--------tg~~~~--------~~--~l~D~cGva~~~~~-f~~ssG-~G~  278 (305)
T PF07433_consen  245 DAA--------TGRLLG--------SV--PLPDACGVAPTDDG-FLVSSG-QGQ  278 (305)
T ss_pred             ECC--------CCCEee--------cc--ccCceeeeeecCCc-eEEeCC-Ccc
Confidence            984        465431        11  12345667766666 555554 344

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.54  E-value=0.017  Score=59.67  Aligned_cols=187  Identities=16%  Similarity=0.182  Sum_probs=106.2

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD  202 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D  202 (568)
                      ..+++++.+|.|..+|..+|+.+-.....                        +   .+.....    .++..+++++.+
T Consensus        66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~------------------------~---~~~~~p~----v~~~~v~v~~~~  114 (377)
T TIGR03300        66 GKVYAADADGTVVALDAETGKRLWRVDLD------------------------E---RLSGGVG----ADGGLVFVGTEK  114 (377)
T ss_pred             CEEEEECCCCeEEEEEccCCcEeeeecCC------------------------C---CcccceE----EcCCEEEEEcCC
Confidence            57888889999999999998766432111                        0   0101122    245688889999


Q ss_pred             CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCe-
Q 008363          203 GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFI-  280 (568)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i-  280 (568)
                      |.|..+|..++      +.+...... +.+.+.-...+       ..++.+..++ |..||..++ ..++.+......+ 
T Consensus       115 g~l~ald~~tG------~~~W~~~~~-~~~~~~p~v~~-------~~v~v~~~~g~l~a~d~~tG-~~~W~~~~~~~~~~  179 (377)
T TIGR03300       115 GEVIALDAEDG------KELWRAKLS-SEVLSPPLVAN-------GLVVVRTNDGRLTALDAATG-ERLWTYSRVTPALT  179 (377)
T ss_pred             CEEEEEECCCC------cEeeeeccC-ceeecCCEEEC-------CEEEEECCCCeEEEEEcCCC-ceeeEEccCCCcee
Confidence            99999999877      444433221 22221111122       3555566666 999999987 5565554322111 


Q ss_pred             ----EEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCC--CC---E-EEEEEecCCCEE
Q 008363          281 ----YGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS--FA---I-WSVQVSRLTGMV  350 (568)
Q Consensus       281 ----~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~--~~---V-~~l~~sp~~~~l  350 (568)
                          .+....  +..++.+..++.+..+|++        +|+.++....   ..-.+..  ..   + ....+  .+..+
T Consensus       180 ~~~~~sp~~~--~~~v~~~~~~g~v~ald~~--------tG~~~W~~~~---~~~~g~~~~~~~~~~~~~p~~--~~~~v  244 (377)
T TIGR03300       180 LRGSASPVIA--DGGVLVGFAGGKLVALDLQ--------TGQPLWEQRV---ALPKGRTELERLVDVDGDPVV--DGGQV  244 (377)
T ss_pred             ecCCCCCEEE--CCEEEEECCCCEEEEEEcc--------CCCEeeeecc---ccCCCCCchhhhhccCCccEE--ECCEE
Confidence                111122  3467788888999999984        3654320000   0000000  00   0 01111  25678


Q ss_pred             EEEeCCCeEEEEEcCCCeee
Q 008363          351 AYCSADGTVHRFQLTAKAVE  370 (568)
Q Consensus       351 ~s~s~Dg~v~iwd~~~~~~~  370 (568)
                      ++++.+|.++.||..+++..
T Consensus       245 y~~~~~g~l~a~d~~tG~~~  264 (377)
T TIGR03300       245 YAVSYQGRVAALDLRSGRVL  264 (377)
T ss_pred             EEEEcCCEEEEEECCCCcEE
Confidence            88889999999999887543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.00081  Score=65.97  Aligned_cols=84  Identities=13%  Similarity=0.243  Sum_probs=66.6

Q ss_pred             ceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCC-EEEEEeC
Q 008363          220 RPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPG-CVILSFD  297 (568)
Q Consensus       220 ~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~-~l~s~~~  297 (568)
                      +....+.+|...|.+++|+|..     .-++..++.+. |+|.|+++. ..+..+..+ ..+++++|.-+.. +|++|-.
T Consensus       184 kssq~lp~~g~~IrdlafSp~~-----~GLl~~asl~nkiki~dlet~-~~vssy~a~-~~~wSC~wDlde~h~IYaGl~  256 (463)
T KOG1645|consen  184 KSSQILPGEGSFIRDLAFSPFN-----EGLLGLASLGNKIKIMDLETS-CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQ  256 (463)
T ss_pred             chhhcccccchhhhhhccCccc-----cceeeeeccCceEEEEecccc-eeeeheecc-CCceeeeeccCCcceeEEecc
Confidence            4445667788899999999997     23788899998 999999987 566666555 7799999998765 5555666


Q ss_pred             CCcEEEEEccccc
Q 008363          298 DGAMRIVSLLKAA  310 (568)
Q Consensus       298 dg~I~lwd~~~~~  310 (568)
                      .|.|.|||+|...
T Consensus       257 nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  257 NGMVLVYDMRQPE  269 (463)
T ss_pred             CceEEEEEccCCC
Confidence            9999999998754

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.48  E-value=0.06  Score=51.49  Aligned_cols=200  Identities=13%  Similarity=0.140  Sum_probs=103.8

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      +..+.|.|+..         .++++....+.|...+.. |+.++.+.-                        .+ .... 
T Consensus        24 ~SGLTy~pd~~---------tLfaV~d~~~~i~els~~-G~vlr~i~l------------------------~g-~~D~-   67 (248)
T PF06977_consen   24 LSGLTYNPDTG---------TLFAVQDEPGEIYELSLD-GKVLRRIPL------------------------DG-FGDY-   67 (248)
T ss_dssp             EEEEEEETTTT---------EEEEEETTTTEEEEEETT---EEEEEE-------------------------SS--SSE-
T ss_pred             ccccEEcCCCC---------eEEEEECCCCEEEEEcCC-CCEEEEEeC------------------------CC-CCCc-
Confidence            55999999864         677888888888888864 566666421                        22 1222 


Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe-----eCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF-----SADTLPIRAVSWAPAESDSDSANVILTAGHGG  257 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~-----~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~  257 (568)
                      -.|++.  .++.++++--.++.+.++++..............+     ..++..+-.|+|++.+      +.|..+-+..
T Consensus        68 EgI~y~--g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~------~~L~v~kE~~  139 (248)
T PF06977_consen   68 EGITYL--GNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT------NRLFVAKERK  139 (248)
T ss_dssp             EEEEE---STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTT------TEEEEEEESS
T ss_pred             eeEEEE--CCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCC------CEEEEEeCCC
Confidence            667776  56655555556899999998543221111111222     1355668999999987      4555555555


Q ss_pred             -EEEEECCC--CCcceee--------eCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEccccccCCCCCCCCccCccc
Q 008363          258 -LKFWDIRD--PFRPLWD--------IHPAPKFIYGLDWLPDP-GCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQ  325 (568)
Q Consensus       258 -v~lwD~~~--~~~~~~~--------~~~h~~~i~~l~~sp~~-~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~  325 (568)
                       ..|+.+..  ....+..        ....-..+.+++++|.. ++++.+.....|..+|.         .|+++.    
T Consensus       140 P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~---------~G~~~~----  206 (248)
T PF06977_consen  140 PKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR---------QGRVVS----  206 (248)
T ss_dssp             SEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T---------T--EEE----
T ss_pred             ChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC---------CCCEEE----
Confidence             66666654  1111111        11233457899999965 55556666888888886         465531    


Q ss_pred             cceEEEec--C-----CCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 008363          326 QGLHLVNC--S-----SFAIWSVQVSRLTGMVAYCSADGTVHRF  362 (568)
Q Consensus       326 ~~l~~~~~--h-----~~~V~~l~~sp~~~~l~s~s~Dg~v~iw  362 (568)
                        ...+..  |     -...-.|+|.++|.+.++ +.-+..++|
T Consensus       207 --~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  207 --SLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             --EEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             --EEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence              122222  1     023578999998864444 455555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.48  E-value=0.017  Score=60.24  Aligned_cols=190  Identities=16%  Similarity=0.212  Sum_probs=100.9

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC  175 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~  175 (568)
                      ++...-....+.++|++          +++++ ++||.-.|+..........                            
T Consensus        28 lg~~~~~p~~ls~npng----------r~v~V-~g~geY~iyt~~~~r~k~~----------------------------   68 (443)
T PF04053_consen   28 LGSCEIYPQSLSHNPNG----------RFVLV-CGDGEYEIYTALAWRNKAF----------------------------   68 (443)
T ss_dssp             EEE-SS--SEEEE-TTS----------SEEEE-EETTEEEEEETTTTEEEEE----------------------------
T ss_pred             CCCCCcCCeeEEECCCC----------CEEEE-EcCCEEEEEEccCCccccc----------------------------
Confidence            34333345589999999          78887 5678888888444222211                            


Q ss_pred             CCcCccceEEEEccCCCCCEEEEEeCCCeEEEE-EccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363          176 GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALW-KFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG  254 (568)
Q Consensus       176 ~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iw-d~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s  254 (568)
                         +. +..+.|.  +. +.+|+-...++|.|+ ++...       ....+.. ...+..|-.   |      .+|+..+
T Consensus        69 ---G~-g~~~vw~--~~-n~yAv~~~~~~I~I~kn~~~~-------~~k~i~~-~~~~~~If~---G------~LL~~~~  124 (443)
T PF04053_consen   69 ---GS-GLSFVWS--SR-NRYAVLESSSTIKIYKNFKNE-------VVKSIKL-PFSVEKIFG---G------NLLGVKS  124 (443)
T ss_dssp             ---EE--SEEEE---TS-SEEEEE-TTS-EEEEETTEE--------TT------SS-EEEEE----S------SSEEEEE
T ss_pred             ---Cc-eeEEEEe--cC-ccEEEEECCCeEEEEEcCccc-------cceEEcC-CcccceEEc---C------cEEEEEC
Confidence               11 3788998  54 467877778999996 34322       1112211 112444432   6      6777777


Q ss_pred             CCCEEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccC-CCCCCCCccCccccceEEEec
Q 008363          255 HGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYD-VPATGKPFAGTKQQGLHLVNC  333 (568)
Q Consensus       255 ~d~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~-~~~~g~~~~~~~~~~l~~~~~  333 (568)
                      .+.|.+||..+. +.+..+...  .|..+.|++++.+++..+.+ .+++++....... .+..|-.      ..+..+..
T Consensus       125 ~~~i~~yDw~~~-~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e------~~f~~~~E  194 (443)
T PF04053_consen  125 SDFICFYDWETG-KLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVE------DAFELIHE  194 (443)
T ss_dssp             TTEEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-G------GGEEEEEE
T ss_pred             CCCEEEEEhhHc-ceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCch------hceEEEEE
Confidence            777999999987 777777532  38999999999999998755 6778776432000 0011111      13344444


Q ss_pred             CCCCEEEEEEecCCCEEEEEeCCCeEEE
Q 008363          334 SSFAIWSVQVSRLTGMVAYCSADGTVHR  361 (568)
Q Consensus       334 h~~~V~~l~~sp~~~~l~s~s~Dg~v~i  361 (568)
                      ....|.+.+|..+  .++..+.. .|+.
T Consensus       195 ~~~~IkSg~W~~d--~fiYtT~~-~lkY  219 (443)
T PF04053_consen  195 ISERIKSGCWVED--CFIYTTSN-HLKY  219 (443)
T ss_dssp             E-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred             ecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence            3577888899765  55555555 6666

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.39  E-value=0.0097  Score=64.09  Aligned_cols=180  Identities=16%  Similarity=0.197  Sum_probs=113.2

Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCC-eeEEEEccCCCCCCCCcEEEEEcCC-----C-EEEEEC
Q 008363          191 PPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLP-IRAVSWAPAESDSDSANVILTAGHG-----G-LKFWDI  263 (568)
Q Consensus       191 ~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~-V~~v~~~p~~~~~~~~~~las~s~d-----~-v~lwD~  263 (568)
                      +.+..++.|+.+|.|.+.+-.       .+.++.|.++... |..+......      ++|++.+.|     . |+|||+
T Consensus        33 s~~~~vvigt~~G~V~~Ln~s-------~~~~~~fqa~~~siv~~L~~~~~~------~~L~sv~Ed~~~np~llkiw~l   99 (933)
T KOG2114|consen   33 SSTGSVVIGTADGRVVILNSS-------FQLIRGFQAYEQSIVQFLYILNKQ------NFLFSVGEDEQGNPVLLKIWDL   99 (933)
T ss_pred             CCCceEEEeeccccEEEeccc-------ceeeehheecchhhhhHhhcccCc------eEEEEEeecCCCCceEEEEecc
Confidence            678899999999999888744       2455778887777 4444433333      688887664     2 899999


Q ss_pred             CCCC-----cce--eeeCC-----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363          264 RDPF-----RPL--WDIHP-----APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV  331 (568)
Q Consensus       264 ~~~~-----~~~--~~~~~-----h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~  331 (568)
                      ....     .++  ..+.+     .+.++.+++.+.+-..+++|-.+|.|.++.-.-.. +   .|..        ....
T Consensus       100 ek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R-D---rgsr--------~~~~  167 (933)
T KOG2114|consen  100 EKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR-D---RGSR--------QDYS  167 (933)
T ss_pred             cccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh-c---cccc--------eeee
Confidence            6431     223  11222     35567899999999999999999999988532111 0   1211        1222


Q ss_pred             ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEE
Q 008363          332 NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITV  395 (568)
Q Consensus       332 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~  395 (568)
                      .....+|+++++..++..++-+..-..|.+|.+.........-.+......|++++.....+.+
T Consensus       168 ~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIc  231 (933)
T KOG2114|consen  168 HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFIC  231 (933)
T ss_pred             ccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEE
Confidence            3345799999999998664444445689999987433111111223344567766655544444

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.35  E-value=0.017  Score=59.37  Aligned_cols=179  Identities=16%  Similarity=0.210  Sum_probs=95.2

Q ss_pred             cCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCC
Q 008363           98 HNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGG  177 (568)
Q Consensus        98 h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h  177 (568)
                      ..+ .|.+++.|.-|           ++|+|..+|.+.|.|++.+..+..-.-..                  .......
T Consensus        85 ~~g-~vtal~~S~iG-----------Fvaigy~~G~l~viD~RGPavI~~~~i~~------------------~~~~~~~  134 (395)
T PF08596_consen   85 KQG-PVTALKNSDIG-----------FVAIGYESGSLVVIDLRGPAVIYNENIRE------------------SFLSKSS  134 (395)
T ss_dssp             -S--SEEEEEE-BTS-----------EEEEEETTSEEEEEETTTTEEEEEEEGGG--------------------T-SS-
T ss_pred             cCC-cEeEEecCCCc-----------EEEEEecCCcEEEEECCCCeEEeeccccc------------------ccccccc
Confidence            355 56599998666           99999999999999998877665421110                  0000122


Q ss_pred             cCccceEEEEccC---CCC---CEEEEEeCCCeEEEEEccC-CCCCCCCceeEEeeCCCCCeeEEE-EccCCC-------
Q 008363          178 TQSIPLTMEWSTS---PPH---DYLLAGCHDGTVALWKFVA-SDSSIDSRPLLCFSADTLPIRAVS-WAPAES-------  242 (568)
Q Consensus       178 ~~~V~~~v~~s~~---~~g---~~l~sgs~Dg~I~iwd~~~-~~~~~~~~~~~~~~~h~~~V~~v~-~~p~~~-------  242 (568)
                      ...+ +++.|...   .|+   -.|++|...|.+.+|.+.- ...............|.++|..|. |+.+..       
T Consensus       135 ~~~v-t~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~  213 (395)
T PF08596_consen  135 SSYV-TSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATI  213 (395)
T ss_dssp             ---E-EEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BH
T ss_pred             ccCe-eEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCch
Confidence            3334 67777632   222   3789999999999998852 111001122222235667777665 322210       


Q ss_pred             --------CCCCCcEEEEEcCCCEEEEECCCCCcceeeeCCCCCCeEEEEEc-----CCCCEEEEEeCCCcEEEEEccc
Q 008363          243 --------DSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWL-----PDPGCVILSFDDGAMRIVSLLK  308 (568)
Q Consensus       243 --------~~~~~~~las~s~d~v~lwD~~~~~~~~~~~~~h~~~i~~l~~s-----p~~~~l~s~~~dg~I~lwd~~~  308 (568)
                              ...-+.+++.++...++++...+.......+ ...-....+++-     ..+..|++-..+|.|++|.+..
T Consensus       214 ~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~  291 (395)
T PF08596_consen  214 SAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS  291 (395)
T ss_dssp             HHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred             hHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence                    0112346777777679999988763333333 222223445553     3566777778999999999943

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.35  E-value=0.0066  Score=66.82  Aligned_cols=140  Identities=11%  Similarity=0.040  Sum_probs=95.0

Q ss_pred             eCCCeEEEEEccCCCCCCCCceeEEeeCCCCC-eeEEEEccCCCCC--CCCcEEEEEcCCCEEEEECCCCCcceeeeC--
Q 008363          200 CHDGTVALWKFVASDSSIDSRPLLCFSADTLP-IRAVSWAPAESDS--DSANVILTAGHGGLKFWDIRDPFRPLWDIH--  274 (568)
Q Consensus       200 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~-V~~v~~~p~~~~~--~~~~~las~s~d~v~lwD~~~~~~~~~~~~--  274 (568)
                      .....|+-.|+..+      +.+..+..|... |..+  .|+....  .+...|+.-+...|..||.|-....+..-.  
T Consensus       501 ~~~~~ly~mDLe~G------KVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  501 NNPNKLYKMDLERG------KVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             CCCCceEEEecCCC------cEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            34577888888877      888888887754 5554  4432101  123556666666699999997533222111  


Q ss_pred             --CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEE
Q 008363          275 --PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAY  352 (568)
Q Consensus       275 --~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s  352 (568)
                        ......+|++-+.+| +||+|+.+|.|||||-         .|.       ..-..+.+-..+|.+|..+.||++|+.
T Consensus       573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~---------~g~-------~AKT~lp~lG~pI~~iDvt~DGkwila  635 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR---------LGK-------RAKTALPGLGDPIIGIDVTADGKWILA  635 (794)
T ss_pred             ccccCCCceEEEecCCc-eEEEEeCCCcEEeecc---------cch-------hhhhcCCCCCCCeeEEEecCCCcEEEE
Confidence              123346788877766 5999999999999995         122       112356677899999999999998877


Q ss_pred             EeCCCeEEEEEcC
Q 008363          353 CSADGTVHRFQLT  365 (568)
Q Consensus       353 ~s~Dg~v~iwd~~  365 (568)
                      .+ +..|.+++..
T Consensus       636 Tc-~tyLlLi~t~  647 (794)
T PF08553_consen  636 TC-KTYLLLIDTL  647 (794)
T ss_pred             ee-cceEEEEEEe
Confidence            76 5677788763

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.27  E-value=0.052  Score=55.87  Aligned_cols=232  Identities=12%  Similarity=0.073  Sum_probs=114.6

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceee--EEeccCC-------ccCCCCceEEEeecc-----
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMK--AIYLSSM-------KEGTDPRFVKLEPVF-----  168 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~--~l~~~~~-------~~~~~~~~v~~~~~~-----  168 (568)
                      |..+.|.+..          .-||+|...|.|.||.+...+...  .......       ........+.+.+..     
T Consensus         4 v~~vs~a~~t----------~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~   73 (395)
T PF08596_consen    4 VTHVSFAPET----------LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLK   73 (395)
T ss_dssp             EEEEEEETTT----------TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-S
T ss_pred             EEEEEecCCC----------ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccc
Confidence            3488999988          689999999999999887643322  0000000       001122222221111     


Q ss_pred             ---eecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEE--eeC------CCCCeeEEEE
Q 008363          169 ---RCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLC--FSA------DTLPIRAVSW  237 (568)
Q Consensus       169 ---~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~--~~~------h~~~V~~v~~  237 (568)
                         .....+....+.| ++++-+   +=.++|.|+.+|.+.|.|++..      ..+..  +..      ....|+++.|
T Consensus        74 ~gf~P~~l~~~~~g~v-tal~~S---~iGFvaigy~~G~l~viD~RGP------avI~~~~i~~~~~~~~~~~~vt~ieF  143 (395)
T PF08596_consen   74 EGFLPLTLLDAKQGPV-TALKNS---DIGFVAIGYESGSLVVIDLRGP------AVIYNENIRESFLSKSSSSYVTSIEF  143 (395)
T ss_dssp             EEEEEEEEE---S-SE-EEEEE----BTSEEEEEETTSEEEEEETTTT------EEEEEEEGGG--T-SS----EEEEEE
T ss_pred             cccCchhheeccCCcE-eEEecC---CCcEEEEEecCCcEEEEECCCC------eEEeeccccccccccccccCeeEEEE
Confidence               1111223447888 999977   4459999999999999999855      33332  222      2345888888


Q ss_pred             ccC--CCCCCCCcEEEEEcCCC-EEEEECCC-C-C----cceeeeCCCCCCeEEEE-EcCC-C-----------------
Q 008363          238 APA--ESDSDSANVILTAGHGG-LKFWDIRD-P-F----RPLWDIHPAPKFIYGLD-WLPD-P-----------------  289 (568)
Q Consensus       238 ~p~--~~~~~~~~~las~s~d~-v~lwD~~~-~-~----~~~~~~~~h~~~i~~l~-~sp~-~-----------------  289 (568)
                      .--  +.|..+.-.+..|...| +.+|.+.- . .    ........+.+.|..|. |+.+ |                 
T Consensus       144 ~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~  223 (395)
T PF08596_consen  144 SVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGI  223 (395)
T ss_dssp             EEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT-
T ss_pred             EEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCC
Confidence            721  11111223555666667 88887751 1 1    11112224566665554 3222 1                 


Q ss_pred             --CEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEe-----cCCCEEEEEeCCCeEEEE
Q 008363          290 --GCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVS-----RLTGMVAYCSADGTVHRF  362 (568)
Q Consensus       290 --~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~s-----p~~~~l~s~s~Dg~v~iw  362 (568)
                        ..+++...+..|+++...+        ++.        .+...........+.+-     ..+..|++-..+|.|++|
T Consensus       224 ~i~g~vVvvSe~~irv~~~~~--------~k~--------~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~  287 (395)
T PF08596_consen  224 SIPGYVVVVSESDIRVFKPPK--------SKG--------AHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIY  287 (395)
T ss_dssp             ---EEEEEE-SSEEEEE-TT-----------E--------EEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred             CcCcEEEEEcccceEEEeCCC--------Ccc--------cceeeccccccceEEEEeecccCCceEEEEEECCCcEEEE
Confidence              3345555677899998843        211        12222221223334442     346788899999999999


Q ss_pred             EcCCCeee
Q 008363          363 QLTAKAVE  370 (568)
Q Consensus       363 d~~~~~~~  370 (568)
                      .+-.-+..
T Consensus       288 SLP~Lkei  295 (395)
T PF08596_consen  288 SLPSLKEI  295 (395)
T ss_dssp             ETTT--EE
T ss_pred             ECCCchHh
Confidence            99654443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>smart00320 WD40 WD40 repeats

Probab=97.25  E-value=0.0008  Score=42.70  Aligned_cols=37  Identities=24%  Similarity=0.186  Sum_probs=33.4

Q ss_pred             ceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363          327 GLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQ  363 (568)
Q Consensus       327 ~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd  363 (568)
                      ++..+..|...|+++.|++.+.++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4567788999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.23  E-value=0.054  Score=56.36  Aligned_cols=158  Identities=16%  Similarity=0.143  Sum_probs=81.3

Q ss_pred             CccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCE
Q 008363          179 QSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGL  258 (568)
Q Consensus       179 ~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v  258 (568)
                      +.+ .++.|.  .+ ..|++-..||+++++|+.......-...+....-....+..+.+...|       +++..+...+
T Consensus        81 ~~i-v~~~wt--~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G-------ivvLt~~~~~  149 (410)
T PF04841_consen   81 GRI-VGMGWT--DD-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG-------IVVLTGNNRF  149 (410)
T ss_pred             CCE-EEEEEC--CC-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC-------EEEECCCCeE
Confidence            566 899998  44 677788889999999986331000001111111122223333444454       3333333333


Q ss_pred             E-EEECCCCCc--ceeeeC-------CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363          259 K-FWDIRDPFR--PLWDIH-------PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       259 ~-lwD~~~~~~--~~~~~~-------~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                      . +-+......  .+..+.       .+........++.+....+....++.|.+.+-...                   
T Consensus       150 ~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~-------------------  210 (410)
T PF04841_consen  150 YVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF-------------------  210 (410)
T ss_pred             EEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc-------------------
Confidence            3 323222200  000111       01110011234445555555555666664444210                   


Q ss_pred             EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363          329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~  367 (568)
                      ..+. ..+++..|++||++++||.-..+|.+.+....-.
T Consensus       211 ~~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~  248 (410)
T PF04841_consen  211 KQID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS  248 (410)
T ss_pred             cccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence            0111 2468999999999999999999999988876433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.23  E-value=0.14  Score=51.43  Aligned_cols=192  Identities=15%  Similarity=0.194  Sum_probs=104.5

Q ss_pred             cEEEEEeC----------CCcEEEEECCCC----ceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEc
Q 008363          123 GYLAVLLG----------NGSLEVWEVPLL----RTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWS  188 (568)
Q Consensus       123 ~~las~s~----------dg~V~iwd~~~~----~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s  188 (568)
                      .+|++|+.          .|.|.++++...    ..+..+..                        ....+.| ++++-.
T Consensus        43 ~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~------------------------~~~~g~V-~ai~~~   97 (321)
T PF03178_consen   43 EYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS------------------------TEVKGPV-TAICSF   97 (321)
T ss_dssp             EEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE------------------------EEESS-E-EEEEEE
T ss_pred             CEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE------------------------EeecCcc-eEhhhh
Confidence            68888864          288999999883    12221100                        2345667 888843


Q ss_pred             cCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-CCEEEEECCCCC
Q 008363          189 TSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-GGLKFWDIRDPF  267 (568)
Q Consensus       189 ~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~v~lwD~~~~~  267 (568)
                         .+ .|++|. .+.|.+|++....   .......+.. ...+.++...  +      ++|+.|.. ++|.++......
T Consensus        98 ---~~-~lv~~~-g~~l~v~~l~~~~---~l~~~~~~~~-~~~i~sl~~~--~------~~I~vgD~~~sv~~~~~~~~~  160 (321)
T PF03178_consen   98 ---NG-RLVVAV-GNKLYVYDLDNSK---TLLKKAFYDS-PFYITSLSVF--K------NYILVGDAMKSVSLLRYDEEN  160 (321)
T ss_dssp             ---TT-EEEEEE-TTEEEEEEEETTS---SEEEEEEE-B-SSSEEEEEEE--T------TEEEEEESSSSEEEEEEETTT
T ss_pred             ---CC-EEEEee-cCEEEEEEccCcc---cchhhheecc-eEEEEEEecc--c------cEEEEEEcccCEEEEEEEccC
Confidence               33 555555 5799999999773   0122233322 2356666555  3      46666655 457766444322


Q ss_pred             cceeee--CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEE---E
Q 008363          268 RPLWDI--HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSV---Q  342 (568)
Q Consensus       268 ~~~~~~--~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l---~  342 (568)
                      ..+..+  ......++++.|.+++..++++..+|.|.++........ ...+..    ....+..+. ....|+++   +
T Consensus       161 ~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~-~~~~~~----~L~~~~~f~-lg~~v~~~~~~~  234 (321)
T PF03178_consen  161 NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPN-SRDGDP----KLERISSFH-LGDIVNSFRRGS  234 (321)
T ss_dssp             E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SS-TTTTTT----BEEEEEEEE--SS-EEEEEE--
T ss_pred             CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcc-cccccc----cceeEEEEE-CCCccceEEEEE
Confidence            323222  233556889999977788889999999999988532110 011210    113333443 33567776   4


Q ss_pred             Eec--CC------CEEEEEeCCCeEEEE
Q 008363          343 VSR--LT------GMVAYCSADGTVHRF  362 (568)
Q Consensus       343 ~sp--~~------~~l~s~s~Dg~v~iw  362 (568)
                      +.|  .+      ..++.++.+|.|.+.
T Consensus       235 l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  235 LIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             eeecCCCCcccccceEEEEecCCEEEEE
Confidence            445  22      248888899998843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.20  E-value=0.027  Score=58.61  Aligned_cols=154  Identities=17%  Similarity=0.213  Sum_probs=91.1

Q ss_pred             eEEEEccCCCCCEEEEEe--CC--CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-
Q 008363          183 LTMEWSTSPPHDYLLAGC--HD--GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-  257 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs--~D--g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-  257 (568)
                      ..-.|+  +++..++--+  ..  ..+.++++.++..    ..+..+.++..   .-+|+|+|+     .++.+...|+ 
T Consensus       196 ~~p~ws--~~~~~~~y~~f~~~~~~~i~~~~l~~g~~----~~i~~~~g~~~---~P~fspDG~-----~l~f~~~rdg~  261 (425)
T COG0823         196 LTPAWS--PDGKKLAYVSFELGGCPRIYYLDLNTGKR----PVILNFNGNNG---APAFSPDGS-----KLAFSSSRDGS  261 (425)
T ss_pred             eccccC--cCCCceEEEEEecCCCceEEEEeccCCcc----ceeeccCCccC---CccCCCCCC-----EEEEEECCCCC
Confidence            556788  6666544331  12  3589999987733    44445555544   458999993     4555555554 


Q ss_pred             --EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363          258 --LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS  334 (568)
Q Consensus       258 --v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h  334 (568)
                        |.+.|+.+..  +..+....+.-..-.|+|||+.|+..++ .|.-.||-...       .|...        ..+...
T Consensus       262 ~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~-------~g~~~--------~riT~~  324 (425)
T COG0823         262 PDIYLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDL-------EGSQV--------TRLTFS  324 (425)
T ss_pred             ccEEEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECC-------CCCce--------eEeecc
Confidence              8888998764  3334333333357789999999998765 55544544321       12211        222222


Q ss_pred             CCCEEEEEEecCCCEEEEEeCC-Ce--EEEEEcCCC
Q 008363          335 SFAIWSVQVSRLTGMVAYCSAD-GT--VHRFQLTAK  367 (568)
Q Consensus       335 ~~~V~~l~~sp~~~~l~s~s~D-g~--v~iwd~~~~  367 (568)
                      ...-..-.|+|+|.+|+..+.. |.  |.+.++.++
T Consensus       325 ~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~  360 (425)
T COG0823         325 GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG  360 (425)
T ss_pred             CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence            2222267899999988888753 44  555555443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.20  E-value=0.01  Score=65.40  Aligned_cols=100  Identities=12%  Similarity=0.126  Sum_probs=74.3

Q ss_pred             CEEEEEeCCCeEEEEEccCCCCCCCCceeE----EeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCc
Q 008363          194 DYLLAGCHDGTVALWKFVASDSSIDSRPLL----CFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFR  268 (568)
Q Consensus       194 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~----~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~  268 (568)
                      ...+.|-.+..|..||.+-...    +++.    .+ .......|++-..+|       +||.|+.+| |||||-- +.+
T Consensus       543 e~tflGls~n~lfriDpR~~~~----k~v~~~~k~Y-~~~~~Fs~~aTt~~G-------~iavgs~~G~IRLyd~~-g~~  609 (794)
T PF08553_consen  543 EQTFLGLSDNSLFRIDPRLSGN----KLVDSQSKQY-SSKNNFSCFATTEDG-------YIAVGSNKGDIRLYDRL-GKR  609 (794)
T ss_pred             CceEEEECCCceEEeccCCCCC----ceeecccccc-ccCCCceEEEecCCc-------eEEEEeCCCcEEeeccc-chh
Confidence            4567788888999999985421    2221    22 234568888888887       999999999 9999954 334


Q ss_pred             ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 008363          269 PLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLL  307 (568)
Q Consensus       269 ~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~  307 (568)
                      ....+.+-..+|..|+.+.||++|++.+. ..|.|++..
T Consensus       610 AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t~  647 (794)
T PF08553_consen  610 AKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDTL  647 (794)
T ss_pred             hhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEEe
Confidence            44556677899999999999999988774 567778763

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.12  E-value=0.003  Score=66.48  Aligned_cols=111  Identities=14%  Similarity=0.149  Sum_probs=81.1

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW  261 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw  261 (568)
                      +|++    ..+.+|+.|+.-|.|.+|+-..+..     ......+-.+.+..+..++..      .++|.|+..+ |.++
T Consensus        39 Tc~d----st~~~l~~GsS~G~lyl~~R~~~~~-----~~~~~~~~~~~~~~~~vs~~e------~lvAagt~~g~V~v~  103 (726)
T KOG3621|consen   39 TCVD----ATEEYLAMGSSAGSVYLYNRHTGEM-----RKLKNEGATGITCVRSVSSVE------YLVAAGTASGRVSVF  103 (726)
T ss_pred             EEee----cCCceEEEecccceEEEEecCchhh-----hcccccCccceEEEEEecchh------HhhhhhcCCceEEee
Confidence            5555    4578999999999999999775521     222233345556677778887      7888888888 8888


Q ss_pred             ECCCCCcce-e---ee-CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363          262 DIRDPFRPL-W---DI-HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK  308 (568)
Q Consensus       262 D~~~~~~~~-~---~~-~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~  308 (568)
                      -+.....+- .   .+ ..|...|++++|++++..+++|...|.|.+-.+..
T Consensus       104 ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  104 QLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             hhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            776543211 1   11 14678899999999999999999999999887754

>smart00320 WD40 WD40 repeats

Probab=97.02  E-value=0.0014  Score=41.46  Aligned_cols=38  Identities=16%  Similarity=0.249  Sum_probs=33.0

Q ss_pred             cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 008363          268 RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVS  305 (568)
Q Consensus       268 ~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd  305 (568)
                      .+...+..|...|+++.|++.+..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34556667888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.00  E-value=0.16  Score=51.09  Aligned_cols=147  Identities=12%  Similarity=0.189  Sum_probs=90.2

Q ss_pred             CCEEEEEeC----------CCeEEEEEccCC-CCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEE
Q 008363          193 HDYLLAGCH----------DGTVALWKFVAS-DSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFW  261 (568)
Q Consensus       193 g~~l~sgs~----------Dg~I~iwd~~~~-~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lw  261 (568)
                      ..+|++|+.          .|.|.++++... ......+.+... ...++|++|+-- .+       .|+.+....|.+|
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~-------~lv~~~g~~l~v~  112 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NG-------RLVVAVGNKLYVY  112 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TT-------EEEEEETTEEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CC-------EEEEeecCEEEEE
Confidence            357777753          289999999863 100112233333 347889999766 33       4555555559999


Q ss_pred             ECCCCCcce-eeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe--cCCCCE
Q 008363          262 DIRDPFRPL-WDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN--CSSFAI  338 (568)
Q Consensus       262 D~~~~~~~~-~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~--~h~~~V  338 (568)
                      ++......+ ..+......+.++...  +.+|++|.....|.++..+..       +        ..+..+.  .....+
T Consensus       113 ~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~-------~--------~~l~~va~d~~~~~v  175 (321)
T PF03178_consen  113 DLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEE-------N--------NKLILVARDYQPRWV  175 (321)
T ss_dssp             EEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETT-------T--------E-EEEEEEESS-BEE
T ss_pred             EccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEcc-------C--------CEEEEEEecCCCccE
Confidence            998774122 2222223356777666  669999988888888866431       1        1122222  234558


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          339 WSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       339 ~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      +++.|-+++..++.+..+|.|.++...
T Consensus       176 ~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  176 TAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            888888666799999999999999985

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.0046  Score=64.36  Aligned_cols=93  Identities=18%  Similarity=0.320  Sum_probs=68.7

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      +..+.|+|.-          .+||.+..+|.|.+..+. -+.+-++                          .-|...+.
T Consensus        23 i~~~ewnP~~----------dLiA~~t~~gelli~R~n-~qRlwti--------------------------p~p~~~v~   65 (665)
T KOG4640|consen   23 IKRIEWNPKM----------DLIATRTEKGELLIHRLN-WQRLWTI--------------------------PIPGENVT   65 (665)
T ss_pred             eEEEEEcCcc----------chhheeccCCcEEEEEec-cceeEec--------------------------cCCCCccc
Confidence            3479999998          699999999999988877 3444333                          33445552


Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEE-eeCCCCCeeEEEEccC
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLC-FSADTLPIRAVSWAPA  240 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~-~~~h~~~V~~v~~~p~  240 (568)
                      .+++|.  |||..||+|-.||+|++.|+..+      ..+.. ...-...|.++-|.+.
T Consensus        66 ~sL~W~--~DGkllaVg~kdG~I~L~Dve~~------~~l~~~~~s~e~~is~~~w~~~  116 (665)
T KOG4640|consen   66 ASLCWR--PDGKLLAVGFKDGTIRLHDVEKG------GRLVSFLFSVETDISKGIWDRI  116 (665)
T ss_pred             eeeeec--CCCCEEEEEecCCeEEEEEccCC------Cceeccccccccchheeecccc
Confidence            499999  89999999999999999999977      33332 1223556888888643

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.92  E-value=0.041  Score=57.21  Aligned_cols=157  Identities=17%  Similarity=0.273  Sum_probs=87.3

Q ss_pred             cCCceeeEEEEccCCCCcccccCcccEEEEEeCC-CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363           98 HNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGN-GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG  176 (568)
Q Consensus        98 h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~d-g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~  176 (568)
                      +....+..-+|+|++.       .+.++..-... ..+.++++.++.....+.                        ..+
T Consensus       190 ~~~~~~~~p~ws~~~~-------~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~------------------------~~g  238 (425)
T COG0823         190 DSGSLILTPAWSPDGK-------KLAYVSFELGGCPRIYYLDLNTGKRPVILN------------------------FNG  238 (425)
T ss_pred             ccCcceeccccCcCCC-------ceEEEEEecCCCceEEEEeccCCccceeec------------------------cCC
Confidence            3333455678888883       11222222233 358888888866554431                        023


Q ss_pred             CcCccceEEEEccCCCCCEEEE-EeCCCeEEEE--EccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363          177 GTQSIPLTMEWSTSPPHDYLLA-GCHDGTVALW--KFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA  253 (568)
Q Consensus       177 h~~~V~~~v~~s~~~~g~~l~s-gs~Dg~I~iw--d~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~  253 (568)
                      +.    ..-+|+  |+|+.|+. ...||...||  |+...      . +..+..-.+.-..=.|+|+|      ..|+-.
T Consensus       239 ~~----~~P~fs--pDG~~l~f~~~rdg~~~iy~~dl~~~------~-~~~Lt~~~gi~~~Ps~spdG------~~ivf~  299 (425)
T COG0823         239 NN----GAPAFS--PDGSKLAFSSSRDGSPDIYLMDLDGK------N-LPRLTNGFGINTSPSWSPDG------SKIVFT  299 (425)
T ss_pred             cc----CCccCC--CCCCEEEEEECCCCCccEEEEcCCCC------c-ceecccCCccccCccCCCCC------CEEEEE
Confidence            32    445788  88887654 5567765555  55544      2 22232222223356789999      555555


Q ss_pred             cC-CC---EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCc--EEEEEc
Q 008363          254 GH-GG---LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DGA--MRIVSL  306 (568)
Q Consensus       254 s~-d~---v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~--I~lwd~  306 (568)
                      ++ .|   |.+.|.........+..  .+.-..-.|+|||++|+..+. +|.  |.+.|+
T Consensus       300 Sdr~G~p~I~~~~~~g~~~~riT~~--~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~  357 (425)
T COG0823         300 SDRGGRPQIYLYDLEGSQVTRLTFS--GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDL  357 (425)
T ss_pred             eCCCCCcceEEECCCCCceeEeecc--CCCCcCccCCCCCCEEEEEeccCCceeeEEecc
Confidence            44 44   77777776533233332  222237789999999998875 344  444554

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.89  E-value=0.16  Score=52.74  Aligned_cols=181  Identities=12%  Similarity=0.080  Sum_probs=100.9

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD  202 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D  202 (568)
                      ..++.++.+|.|.-+|..+|+.+-....                        .+   .+ .+   +|.-.+..++.++.+
T Consensus       121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~------------------------~~---~~-~s---sP~v~~~~v~v~~~~  169 (394)
T PRK11138        121 GKVYIGSEKGQVYALNAEDGEVAWQTKV------------------------AG---EA-LS---RPVVSDGLVLVHTSN  169 (394)
T ss_pred             CEEEEEcCCCEEEEEECCCCCCcccccC------------------------CC---ce-ec---CCEEECCEEEEECCC
Confidence            4677788899999999999876644211                        00   01 10   011123477778889


Q ss_pred             CeEEEEEccCCCCCCCCceeEEeeCCCCCe-----eEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCC
Q 008363          203 GTVALWKFVASDSSIDSRPLLCFSADTLPI-----RAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPA  276 (568)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V-----~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h  276 (568)
                      |.|..+|..++      +.+..+......+     .+-... .+       .++.++.++ +..+|..++ ..++.....
T Consensus       170 g~l~ald~~tG------~~~W~~~~~~~~~~~~~~~sP~v~-~~-------~v~~~~~~g~v~a~d~~~G-~~~W~~~~~  234 (394)
T PRK11138        170 GMLQALNESDG------AVKWTVNLDVPSLTLRGESAPATA-FG-------GAIVGGDNGRVSAVLMEQG-QLIWQQRIS  234 (394)
T ss_pred             CEEEEEEccCC------CEeeeecCCCCcccccCCCCCEEE-CC-------EEEEEcCCCEEEEEEccCC-hhhheeccc
Confidence            99999999877      4444442211000     001111 22       344455566 888888877 444433210


Q ss_pred             C----C---CeEEEEEcC--CCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC
Q 008363          277 P----K---FIYGLDWLP--DPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT  347 (568)
Q Consensus       277 ~----~---~i~~l~~sp--~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~  347 (568)
                      .    .   ....+.-+|  .+..+++++.+|.++.+|..        +|+.++        ...  ......+.  ..+
T Consensus       235 ~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~--------tG~~~W--------~~~--~~~~~~~~--~~~  294 (394)
T PRK11138        235 QPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR--------SGQIVW--------KRE--YGSVNDFA--VDG  294 (394)
T ss_pred             cCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC--------CCCEEE--------eec--CCCccCcE--EEC
Confidence            0    0   011111222  25567778889999999984        465543        111  11111122  246


Q ss_pred             CEEEEEeCCCeEEEEEcCCCee
Q 008363          348 GMVAYCSADGTVHRFQLTAKAV  369 (568)
Q Consensus       348 ~~l~s~s~Dg~v~iwd~~~~~~  369 (568)
                      ..|+.++.||.|..+|..+++.
T Consensus       295 ~~vy~~~~~g~l~ald~~tG~~  316 (394)
T PRK11138        295 GRIYLVDQNDRVYALDTRGGVE  316 (394)
T ss_pred             CEEEEEcCCCeEEEEECCCCcE
Confidence            6788888999999999987754

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.88  E-value=0.007  Score=63.78  Aligned_cols=119  Identities=9%  Similarity=0.004  Sum_probs=87.3

Q ss_pred             CeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccc
Q 008363          231 PIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKA  309 (568)
Q Consensus       231 ~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~  309 (568)
                      .|.--+++..+      .+++.|+.-| |++|.-..+........+..+.+..+..+++..++++|+..|.|.++-+.+.
T Consensus        35 ~v~lTc~dst~------~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~  108 (726)
T KOG3621|consen   35 RVKLTCVDATE------EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE  108 (726)
T ss_pred             eEEEEEeecCC------ceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhcc
Confidence            34444455665      7999999888 9999987765444444444556678888999998999999999999988651


Q ss_pred             ccCCCCCCCCccCccccceEEE-ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          310 AYDVPATGKPFAGTKQQGLHLV-NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       310 ~~~~~~~g~~~~~~~~~~l~~~-~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                      . +    +..      ..+... ..|...|++++|++++..|++|..-|.|..-.+++
T Consensus       109 ~-p----~~~------~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  109 L-P----RDL------DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             C-C----Ccc------eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            1 1    111      111111 23778999999999999999999999999988876

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.70  E-value=0.008  Score=62.61  Aligned_cols=90  Identities=14%  Similarity=0.282  Sum_probs=71.9

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCee-EEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIR-AVSWAPAESDSDSANVILTAGHGG-LKF  260 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~-~v~~~p~~~~~~~~~~las~s~d~-v~l  260 (568)
                      .-+.|+  |.-++||.+..+|.|.+..++-       +.+.++.-|...++ +++|.|+|      ++||.|-.|| |++
T Consensus        24 ~~~ewn--P~~dLiA~~t~~gelli~R~n~-------qRlwtip~p~~~v~~sL~W~~DG------kllaVg~kdG~I~L   88 (665)
T KOG4640|consen   24 KRIEWN--PKMDLIATRTEKGELLIHRLNW-------QRLWTIPIPGENVTASLCWRPDG------KLLAVGFKDGTIRL   88 (665)
T ss_pred             EEEEEc--CccchhheeccCCcEEEEEecc-------ceeEeccCCCCccceeeeecCCC------CEEEEEecCCeEEE
Confidence            678999  6778999999999999998872       56667766777777 99999999      9999999999 999


Q ss_pred             EECCCCCcceeeeCCCCCCeEEEEEcC
Q 008363          261 WDIRDPFRPLWDIHPAPKFIYGLDWLP  287 (568)
Q Consensus       261 wD~~~~~~~~~~~~~h~~~i~~l~~sp  287 (568)
                      .|+.++.........-...|.++.|.|
T Consensus        89 ~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   89 HDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             EEccCCCceeccccccccchheeeccc
Confidence            999988544332333456688888874

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.70  E-value=0.15  Score=41.70  Aligned_cols=89  Identities=16%  Similarity=0.259  Sum_probs=61.3

Q ss_pred             CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceee
Q 008363          194 DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWD  272 (568)
Q Consensus       194 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~  272 (568)
                      +.|++||.|..|++|+-.        ..+..+.. ...|.++.-...+       .|+.+-.+| |-+|+-.   ..++.
T Consensus        16 ~eLlvGs~D~~IRvf~~~--------e~~~Ei~e-~~~v~~L~~~~~~-------~F~Y~l~NGTVGvY~~~---~RlWR   76 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGD--------EIVAEITE-TDKVTSLCSLGGG-------RFAYALANGTVGVYDRS---QRLWR   76 (111)
T ss_pred             ceEEEecCCcEEEEEeCC--------cEEEEEec-ccceEEEEEcCCC-------EEEEEecCCEEEEEeCc---ceeee
Confidence            589999999999999855        56666644 5567788766664       788888877 9999864   34444


Q ss_pred             eCCCCCCeEEEEEcC-C--C-CEEEEEeCCCcEE
Q 008363          273 IHPAPKFIYGLDWLP-D--P-GCVILSFDDGAMR  302 (568)
Q Consensus       273 ~~~h~~~i~~l~~sp-~--~-~~l~s~~~dg~I~  302 (568)
                      ...... ++++++.. +  | ..|++|-.+|.|-
T Consensus        77 iKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   77 IKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            443233 56665543 2  2 3688887788764

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.68  E-value=0.35  Score=46.33  Aligned_cols=171  Identities=11%  Similarity=0.093  Sum_probs=92.7

Q ss_pred             cCCcCccceEEEEccCCC-CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC-CCCeeEEEEccCCCCCCCCcEEEE
Q 008363          175 CGGTQSIPLTMEWSTSPP-HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD-TLPIRAVSWAPAESDSDSANVILT  252 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~-g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-~~~V~~v~~~p~~~~~~~~~~las  252 (568)
                      .+-...+ ..|+|+  |+ +.++++....+.|..++.. +      +.++.+.-. .+..-.|++..++      .++++
T Consensus        18 ~g~~~e~-SGLTy~--pd~~tLfaV~d~~~~i~els~~-G------~vlr~i~l~g~~D~EgI~y~g~~------~~vl~   81 (248)
T PF06977_consen   18 PGILDEL-SGLTYN--PDTGTLFAVQDEPGEIYELSLD-G------KVLRRIPLDGFGDYEGITYLGNG------RYVLS   81 (248)
T ss_dssp             TT--S-E-EEEEEE--TTTTEEEEEETTTTEEEEEETT---------EEEEEE-SS-SSEEEEEE-STT------EEEEE
T ss_pred             CCccCCc-cccEEc--CCCCeEEEEECCCCEEEEEcCC-C------CEEEEEeCCCCCCceeEEEECCC------EEEEE
Confidence            3444556 899999  65 4477777788888877764 3      455544322 3557889998877      55555


Q ss_pred             EcCCC-EEEEECCCCCcc--e---eeeC-----CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCcc
Q 008363          253 AGHGG-LKFWDIRDPFRP--L---WDIH-----PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFA  321 (568)
Q Consensus       253 ~s~d~-v~lwD~~~~~~~--~---~~~~-----~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~  321 (568)
                      --.++ +.++++......  .   ..+.     .+...+-.|+|+|.+..|+++-...-..||.++...     .+..+.
T Consensus        82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~-----~~~~~~  156 (248)
T PF06977_consen   82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP-----GGFDLF  156 (248)
T ss_dssp             ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT------SS--E
T ss_pred             EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc-----Ccccee
Confidence            54566 888888433211  1   1111     244568999999998888888777777788775321     010000


Q ss_pred             CccccceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCC
Q 008363          322 GTKQQGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       322 ~~~~~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~  366 (568)
                      ......+.........+.+++++|.. .+++.......|..+|...
T Consensus       157 ~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G  202 (248)
T PF06977_consen  157 VSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQG  202 (248)
T ss_dssp             EEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT-
T ss_pred             eccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCC
Confidence            00000001111233457889999985 6666777778888888543

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.67  E-value=0.12  Score=53.78  Aligned_cols=188  Identities=14%  Similarity=0.134  Sum_probs=101.9

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD  202 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D  202 (568)
                      ..+++++.+|.|.-+|..+|+.+-......             +..    ...+...++   +      .+..++.++.+
T Consensus       161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-------------~~~----~~~~~~sP~---v------~~~~v~~~~~~  214 (394)
T PRK11138        161 GLVLVHTSNGMLQALNESDGAVKWTVNLDV-------------PSL----TLRGESAPA---T------AFGGAIVGGDN  214 (394)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeecCCC-------------Ccc----cccCCCCCE---E------ECCEEEEEcCC
Confidence            456677788889999998887664431100             000    000111111   1      12367777888


Q ss_pred             CeEEEEEccCCCCCCCCceeEEeeCCC----C---CeeEEEEcc--CCCCCCCCcEEEEEcCCC-EEEEECCCCCcceee
Q 008363          203 GTVALWKFVASDSSIDSRPLLCFSADT----L---PIRAVSWAP--AESDSDSANVILTAGHGG-LKFWDIRDPFRPLWD  272 (568)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~~~h~----~---~V~~v~~~p--~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~  272 (568)
                      |.+..+|..++..      +..+....    .   ....+.-+|  .+      ..++.++.++ +..+|+.++ ..++.
T Consensus       215 g~v~a~d~~~G~~------~W~~~~~~~~~~~~~~~~~~~~~sP~v~~------~~vy~~~~~g~l~ald~~tG-~~~W~  281 (394)
T PRK11138        215 GRVSAVLMEQGQL------IWQQRISQPTGATEIDRLVDVDTTPVVVG------GVVYALAYNGNLVALDLRSG-QIVWK  281 (394)
T ss_pred             CEEEEEEccCChh------hheeccccCCCccchhcccccCCCcEEEC------CEEEEEEcCCeEEEEECCCC-CEEEe
Confidence            9999888887632      22211000    0   000111111  12      3455555666 999999987 55544


Q ss_pred             eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCC-CCEEEEEEecCCCEEE
Q 008363          273 IHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS-FAIWSVQVSRLTGMVA  351 (568)
Q Consensus       273 ~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~-~~V~~l~~sp~~~~l~  351 (568)
                      ...  .....+..  .+..|+.++.+|.|+.+|..        +|+.++        ....-. ....+..+  .+.+|+
T Consensus       282 ~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~--------tG~~~W--------~~~~~~~~~~~sp~v--~~g~l~  339 (394)
T PRK11138        282 REY--GSVNDFAV--DGGRIYLVDQNDRVYALDTR--------GGVELW--------SQSDLLHRLLTAPVL--YNGYLV  339 (394)
T ss_pred             ecC--CCccCcEE--ECCEEEEEcCCCeEEEEECC--------CCcEEE--------cccccCCCcccCCEE--ECCEEE
Confidence            321  11112222  46678888899999999984        465432        111000 11111122  256788


Q ss_pred             EEeCCCeEEEEEcCCCeeec
Q 008363          352 YCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       352 s~s~Dg~v~iwd~~~~~~~~  371 (568)
                      .++.||.|.+.|..+++..-
T Consensus       340 v~~~~G~l~~ld~~tG~~~~  359 (394)
T PRK11138        340 VGDSEGYLHWINREDGRFVA  359 (394)
T ss_pred             EEeCCCEEEEEECCCCCEEE
Confidence            89999999999998887653

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.53  E-value=0.012  Score=64.92  Aligned_cols=99  Identities=12%  Similarity=0.195  Sum_probs=71.5

Q ss_pred             cEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcccc
Q 008363          248 NVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQ  326 (568)
Q Consensus       248 ~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~  326 (568)
                      .+++.|+..| |...|++....++..-..-.++|++++|+.+|..++.|-.+|.|.+||+.        .++++      
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~--------~~k~l------  165 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMH--------RAKIL------  165 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEcc--------CCcce------
Confidence            4788888888 99999987644443333447789999999999999999999999999994        35443      


Q ss_pred             ceEEEecCCCCEEEE---EEecCCCEEEEEeCCCeEEEEEc
Q 008363          327 GLHLVNCSSFAIWSV---QVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       327 ~l~~~~~h~~~V~~l---~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                        +.+..|..+++++   .+..++..++++..-|.  +|++
T Consensus       166 --~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  166 --KVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             --eeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence              4555555554443   44444566777777776  6665

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.51  E-value=1.2  Score=45.52  Aligned_cols=250  Identities=14%  Similarity=0.151  Sum_probs=121.9

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      .+....|||+|          +.||... ++.|.+++..++...+.- .    .| ...+..-.+.......   -... 
T Consensus        44 ~~~~~~~sP~g----------~~~~~v~-~~nly~~~~~~~~~~~lT-~----dg-~~~i~nG~~dwvyeEE---v~~~-  102 (353)
T PF00930_consen   44 KLQDAKWSPDG----------KYIAFVR-DNNLYLRDLATGQETQLT-T----DG-EPGIYNGVPDWVYEEE---VFDR-  102 (353)
T ss_dssp             TBSEEEE-SSS----------TEEEEEE-TTEEEEESSTTSEEEESE-S-------TTTEEESB--HHHHHH---TSSS-
T ss_pred             ccccceeecCC----------CeeEEEe-cCceEEEECCCCCeEEec-c----cc-ceeEEcCccceecccc---cccc-
Confidence            34489999999          7888776 578999998886433221 1    11 2222211111100000   0111 


Q ss_pred             ceEEEEccCCCCCEEEEEeCC-Ce-----------------------------------EEEEEccCCCCCCCCceeEEe
Q 008363          182 PLTMEWSTSPPHDYLLAGCHD-GT-----------------------------------VALWKFVASDSSIDSRPLLCF  225 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~D-g~-----------------------------------I~iwd~~~~~~~~~~~~~~~~  225 (568)
                      ..++-|+  |+|++||..-.| ..                                   +.|+|+.++..    ..+...
T Consensus       103 ~~~~~WS--pd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~----~~~~~~  176 (353)
T PF00930_consen  103 RSAVWWS--PDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKT----TELDPP  176 (353)
T ss_dssp             SBSEEE---TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCC----CEE---
T ss_pred             ccceEEC--CCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcE----EEeeec
Confidence            1568899  888888765433 22                                   22333332211    111111


Q ss_pred             ---eCCCCCeeEEEEccCCCCCCCCc-EEEE-EcCC---C-EEEEECCCCCcceeeeCCCCCCe---EEEEEc-CCCCE-
Q 008363          226 ---SADTLPIRAVSWAPAESDSDSAN-VILT-AGHG---G-LKFWDIRDPFRPLWDIHPAPKFI---YGLDWL-PDPGC-  291 (568)
Q Consensus       226 ---~~h~~~V~~v~~~p~~~~~~~~~-~las-~s~d---~-v~lwD~~~~~~~~~~~~~h~~~i---~~l~~s-p~~~~-  291 (568)
                         ..-...+..+.|.+++      . +++. ...+   . +.+.|..++...+.......+.|   ..+.|. +++.. 
T Consensus       177 ~~~~~~~~yl~~v~W~~d~------~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~  250 (353)
T PF00930_consen  177 NSLNPQDYYLTRVGWSPDG------KRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEF  250 (353)
T ss_dssp             HHHHTSSEEEEEEEEEETT------EEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEE
T ss_pred             cccCCCccCcccceecCCC------cEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEE
Confidence               1223447888999998      5 3333 3333   2 67778876533222222223333   355554 65554 


Q ss_pred             EEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE-EEEecCCCEE-EEEeCC----CeEEEEEcC
Q 008363          292 VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS-VQVSRLTGMV-AYCSAD----GTVHRFQLT  365 (568)
Q Consensus       292 l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~-l~~sp~~~~l-~s~s~D----g~v~iwd~~  365 (568)
                      |.....||.-+||-+..       .|..        ...+......|.. +.|++++..| +++..+    ..|+.-++.
T Consensus       251 l~~s~~~G~~hly~~~~-------~~~~--------~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~  315 (353)
T PF00930_consen  251 LWISERDGYRHLYLYDL-------DGGK--------PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD  315 (353)
T ss_dssp             EEEEETTSSEEEEEEET-------TSSE--------EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred             EEEEEcCCCcEEEEEcc-------cccc--------eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence            44555677666665532       1211        2344445556644 7788886544 455543    356666666


Q ss_pred             -CCeeeccCCCCCcceeeeecccCCCCceEEcccCCC
Q 008363          366 -AKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDN  401 (568)
Q Consensus       366 -~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~  401 (568)
                       .+....- ......+ .-.++++++..++..-.-++
T Consensus       316 ~~~~~~~L-T~~~~~~-~~~~~Spdg~y~v~~~s~~~  350 (353)
T PF00930_consen  316 SGGEPKCL-TCEDGDH-YSASFSPDGKYYVDTYSGPD  350 (353)
T ss_dssp             ETTEEEES-STTSSTT-EEEEE-TTSSEEEEEEESSS
T ss_pred             CCCCeEec-cCCCCCc-eEEEECCCCCEEEEEEcCCC
Confidence             4444432 2222233 34578888888776443333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.49  E-value=0.065  Score=55.00  Aligned_cols=145  Identities=11%  Similarity=0.047  Sum_probs=97.0

Q ss_pred             EEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCC--CCcEEEEEcCCCEEEEECCCCCc-cee
Q 008363          195 YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSD--SANVILTAGHGGLKFWDIRDPFR-PLW  271 (568)
Q Consensus       195 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~--~~~~las~s~d~v~lwD~~~~~~-~~~  271 (568)
                      +|.++..-..|+-.|+..+      +.+..+.-|.. |+-+.+.|+....+  +...|+.-+..+|.-||.|-... .+.
T Consensus       348 il~~~~~~~~l~klDIE~G------KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~  420 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERG------KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA  420 (644)
T ss_pred             EeeCCCCcCcceeeecccc------eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence            4455666677888899877      88888877776 77777888762111  23445555555699999996543 222


Q ss_pred             eeCCCC----CCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC
Q 008363          272 DIHPAP----KFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT  347 (568)
Q Consensus       272 ~~~~h~----~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~  347 (568)
                      ...+|+    ....|++-.-+| +|++|+.+|.|+|||.-         |..       .-..+.+-..+|..|..+.+|
T Consensus       421 ~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri---------~~~-------AKTAlPgLG~~I~hVdvtadG  483 (644)
T KOG2395|consen  421 VVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRI---------GRR-------AKTALPGLGDAIKHVDVTADG  483 (644)
T ss_pred             eeeccccccccccceeeecCCc-eEEEeecCCcEEeehhh---------hhh-------hhhcccccCCceeeEEeeccC
Confidence            222332    123455554444 69999999999999971         221       113567788899999999999


Q ss_pred             CEEEEEeCCCeEEEEEc
Q 008363          348 GMVAYCSADGTVHRFQL  364 (568)
Q Consensus       348 ~~l~s~s~Dg~v~iwd~  364 (568)
                      ++|+..+ +..+.+-++
T Consensus       484 Kwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  484 KWILATC-KTYLLLIDT  499 (644)
T ss_pred             cEEEEec-ccEEEEEEE
Confidence            8877665 667777766

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.40  E-value=0.32  Score=39.76  Aligned_cols=103  Identities=13%  Similarity=0.146  Sum_probs=66.2

Q ss_pred             eeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccc
Q 008363          232 IRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAA  310 (568)
Q Consensus       232 V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~  310 (568)
                      |++|++..-.  ....+.|+.|++|. ||+|+-.   ..+..+.. .+.|++|+-... ..++.+..+|+|-+|+-..  
T Consensus         2 V~al~~~d~d--~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--   72 (111)
T PF14783_consen    2 VTALCLFDFD--GDGENELLVGSDDFEIRVFKGD---EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--   72 (111)
T ss_pred             eeEEEEEecC--CCCcceEEEecCCcEEEEEeCC---cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--
Confidence            5566655422  11237899999999 9999854   45555543 556788877766 5588888999999998621  


Q ss_pred             cCCCCCCCCccCccccceEEEecCCCCEEEEEEecC---C-CEEEEEeCCCeEE
Q 008363          311 YDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL---T-GMVAYCSADGTVH  360 (568)
Q Consensus       311 ~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~---~-~~l~s~s~Dg~v~  360 (568)
                                      .+...+.- ..+.++++..-   | .-|++|=.+|.|-
T Consensus        73 ----------------RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   73 ----------------RLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ----------------eeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence                            12233322 33556555433   2 4788888888764

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.39  E-value=0.38  Score=50.31  Aligned_cols=139  Identities=12%  Similarity=0.243  Sum_probs=81.3

Q ss_pred             CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCC------
Q 008363          193 HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDP------  266 (568)
Q Consensus       193 g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~------  266 (568)
                      |.+|+..+.+ .|.+||+.++      +.++.+..  .+|..|.|++++      .++|-.+.+.+.+++....      
T Consensus       117 G~LL~~~~~~-~i~~yDw~~~------~~i~~i~v--~~vk~V~Ws~~g------~~val~t~~~i~il~~~~~~~~~~~  181 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWETG------KLIRRIDV--SAVKYVIWSDDG------ELVALVTKDSIYILKYNLEAVAAIP  181 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TTT--------EEEEESS---E-EEEEE-TTS------SEEEEE-S-SEEEEEE-HHHHHHBT
T ss_pred             CcEEEEECCC-CEEEEEhhHc------ceeeEEec--CCCcEEEEECCC------CEEEEEeCCeEEEEEecchhccccc
Confidence            6677777644 8999999977      78888753  238999999999      8999999988777765422      


Q ss_pred             ---C-cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEE
Q 008363          267 ---F-RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQ  342 (568)
Q Consensus       267 ---~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~  342 (568)
                         . ..+..++.-...|.+.+|.-+  .++-.+.. .|+.  +.        .|+.         .++..-..+++=+.
T Consensus       182 ~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~--------~Ge~---------~~i~~ld~~~yllg  239 (443)
T PF04053_consen  182 EEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LV--------NGET---------GIIAHLDKPLYLLG  239 (443)
T ss_dssp             TTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EE--------TTEE---------EEEEE-SS--EEEE
T ss_pred             ccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EE--------cCCc---------ceEEEcCCceEEEE
Confidence               0 123333332567889999865  55555555 6765  31        2332         24443456778888


Q ss_pred             EecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363          343 VSRLTGMVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       343 ~sp~~~~l~s~s~Dg~v~iwd~~~~~  368 (568)
                      +.+....|.....|+.|..+.+....
T Consensus       240 y~~~~~~ly~~Dr~~~v~~~~ld~~~  265 (443)
T PF04053_consen  240 YLPKENRLYLIDRDGNVISYELDLSE  265 (443)
T ss_dssp             EETTTTEEEEE-TT--EEEEE--HHH
T ss_pred             EEccCCEEEEEECCCCEEEEEECHHH
Confidence            88888899999999999999886443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.21  E-value=1.8  Score=44.59  Aligned_cols=200  Identities=16%  Similarity=0.133  Sum_probs=126.3

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT  184 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~  184 (568)
                      .++.++.+.         ...+....++.|.+.|..+......+.                         .+.   .|..
T Consensus        78 ~i~v~~~~~---------~vyv~~~~~~~v~vid~~~~~~~~~~~-------------------------vG~---~P~~  120 (381)
T COG3391          78 GVAVNPAGN---------KVYVTTGDSNTVSVIDTATNTVLGSIP-------------------------VGL---GPVG  120 (381)
T ss_pred             ceeeCCCCC---------eEEEecCCCCeEEEEcCcccceeeEee-------------------------ecc---CCce
Confidence            677888874         466666677999999977755554431                         122   1477


Q ss_pred             EEEccCCCCCEEEEEeC---CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc-CCC-EE
Q 008363          185 MEWSTSPPHDYLLAGCH---DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG-HGG-LK  259 (568)
Q Consensus       185 v~~s~~~~g~~l~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s-~d~-v~  259 (568)
                      ++|.  +++..+.++..   ++++.+.|..+.      ........-..+ ..+++.|++      ..+..+. .++ |.
T Consensus       121 ~~~~--~~~~~vYV~n~~~~~~~vsvid~~t~------~~~~~~~vG~~P-~~~a~~p~g------~~vyv~~~~~~~v~  185 (381)
T COG3391         121 LAVD--PDGKYVYVANAGNGNNTVSVIDAATN------KVTATIPVGNTP-TGVAVDPDG------NKVYVTNSDDNTVS  185 (381)
T ss_pred             EEEC--CCCCEEEEEecccCCceEEEEeCCCC------eEEEEEecCCCc-ceEEECCCC------CeEEEEecCCCeEE
Confidence            8887  77766666655   688888887766      555544333344 899999999      5444444 455 99


Q ss_pred             EEECCCCCccee-e---eCCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363          260 FWDIRDPFRPLW-D---IHPAPKFIYGLDWLPDPGCVILSFDD---GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN  332 (568)
Q Consensus       260 lwD~~~~~~~~~-~---~~~h~~~i~~l~~sp~~~~l~s~~~d---g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~  332 (568)
                      +.|.... .... .   ...-...-..+.++|+|.++......   +.+...|...        +....       ..+.
T Consensus       186 vi~~~~~-~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~--------~~v~~-------~~~~  249 (381)
T COG3391         186 VIDTSGN-SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT--------GNVTA-------TDLP  249 (381)
T ss_pred             EEeCCCc-ceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC--------ceEEE-------eccc
Confidence            9997654 2221 0   01112233678999999987776443   5888888843        22210       0011


Q ss_pred             cCCCCEEEEEEecCCCEEEEEe-CCCeEEEEEcCCCeeecc
Q 008363          333 CSSFAIWSVQVSRLTGMVAYCS-ADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       333 ~h~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~~~~~~~  372 (568)
                      .-......+.++|+|.++.+.. ..+.+.+-|..+..+...
T Consensus       250 ~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~  290 (381)
T COG3391         250 VGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT  290 (381)
T ss_pred             cccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence            1111345688999998887774 448899988877655543

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.02  E-value=0.15  Score=52.46  Aligned_cols=99  Identities=13%  Similarity=0.111  Sum_probs=70.4

Q ss_pred             EEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC----CCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcce
Q 008363          196 LLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD----TLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPL  270 (568)
Q Consensus       196 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h----~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~  270 (568)
                      -+.|-.|..|.-||.+-...    ..+....+|    .....|++-..+|       +||.||.+| |+|||- .+.+.-
T Consensus       397 TlvGLs~n~vfriDpRv~~~----~kl~~~q~kqy~~k~nFsc~aTT~sG-------~IvvgS~~GdIRLYdr-i~~~AK  464 (644)
T KOG2395|consen  397 TLVGLSDNSVFRIDPRVQGK----NKLAVVQSKQYSTKNNFSCFATTESG-------YIVVGSLKGDIRLYDR-IGRRAK  464 (644)
T ss_pred             cEEeecCCceEEecccccCc----ceeeeeeccccccccccceeeecCCc-------eEEEeecCCcEEeehh-hhhhhh
Confidence            34566788999999884421    122222233    2346677766776       999999999 999997 343555


Q ss_pred             eeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 008363          271 WDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLL  307 (568)
Q Consensus       271 ~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~  307 (568)
                      ..+.+...+|..|..+.+|.+|++.+ +..+.|.++.
T Consensus       465 TAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  465 TALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             hcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence            56777889999999999999888766 5567777764

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.01  E-value=1.4  Score=41.52  Aligned_cols=136  Identities=11%  Similarity=0.077  Sum_probs=84.0

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD  202 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D  202 (568)
                      .+++.|+..+.+.--|..+|...-.                   ..      .+..-. +..+-     -|++++.|+..
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We-------------------~i------lg~RiE-~sa~v-----vgdfVV~GCy~   72 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWE-------------------AI------LGVRIE-CSAIV-----VGDFVVLGCYS   72 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEee-------------------hh------hCceee-eeeEE-----ECCEEEEEEcc
Confidence            5777888888888888888765422                   11      111100 02222     25789999999


Q ss_pred             CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeE
Q 008363          203 GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIY  281 (568)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~  281 (568)
                      |.+.+.++.++      .....|..-..-=......+++      .+|..|+.|+ .+..|.++. .+++..+--.+...
T Consensus        73 g~lYfl~~~tG------s~~w~f~~~~~vk~~a~~d~~~------glIycgshd~~~yalD~~~~-~cVykskcgG~~f~  139 (354)
T KOG4649|consen   73 GGLYFLCVKTG------SQIWNFVILETVKVRAQCDFDG------GLIYCGSHDGNFYALDPKTY-GCVYKSKCGGGTFV  139 (354)
T ss_pred             CcEEEEEecch------hheeeeeehhhhccceEEcCCC------ceEEEecCCCcEEEeccccc-ceEEecccCCceec
Confidence            99999999987      4444443322211223456776      7999999999 999999976 77766543233234


Q ss_pred             EEEEcCCCCEEEEEeCCCcEE
Q 008363          282 GLDWLPDPGCVILSFDDGAMR  302 (568)
Q Consensus       282 ~l~~sp~~~~l~s~~~dg~I~  302 (568)
                      +-+..|-...|+.+...|.|.
T Consensus       140 sP~i~~g~~sly~a~t~G~vl  160 (354)
T KOG4649|consen  140 SPVIAPGDGSLYAAITAGAVL  160 (354)
T ss_pred             cceecCCCceEEEEeccceEE
Confidence            455666333455555555443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.86  E-value=0.61  Score=44.51  Aligned_cols=238  Identities=16%  Similarity=0.120  Sum_probs=130.7

Q ss_pred             eEEEEccCCCCcccccCcccEEEEEeCCCcE-EEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGSL-EVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~V-~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      +.|.|+|..+         .-++.+-.-|+. .++|..+.+....+...+                  ..++.||-    
T Consensus        71 Hgi~~~p~~~---------ravafARrPGtf~~vfD~~~~~~pv~~~s~~------------------~RHfyGHG----  119 (366)
T COG3490          71 HGIAFHPALP---------RAVAFARRPGTFAMVFDPNGAQEPVTLVSQE------------------GRHFYGHG----  119 (366)
T ss_pred             CCeecCCCCc---------ceEEEEecCCceEEEECCCCCcCcEEEeccc------------------Cceeeccc----
Confidence            3678888776         677777777764 588888877665552221                  11224442    


Q ss_pred             eEEEEccCCCCCEEEEEeCC-----CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC
Q 008363          183 LTMEWSTSPPHDYLLAGCHD-----GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG  257 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~  257 (568)
                         .|+  ++|.+|...-.|     |.|-|||.+.+     .+-+..+..|.-....+.|.++|      ..++.+.. +
T Consensus       120 ---vfs--~dG~~LYATEndfd~~rGViGvYd~r~~-----fqrvgE~~t~GiGpHev~lm~DG------rtlvvanG-G  182 (366)
T COG3490         120 ---VFS--PDGRLLYATENDFDPNRGVIGVYDAREG-----FQRVGEFSTHGIGPHEVTLMADG------RTLVVANG-G  182 (366)
T ss_pred             ---ccC--CCCcEEEeecCCCCCCCceEEEEecccc-----cceecccccCCcCcceeEEecCC------cEEEEeCC-c
Confidence               345  889887765443     78999999854     35666888888888999999999      67766543 2


Q ss_pred             EEEE--------------------ECCCCCc-ceeeeC--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCC
Q 008363          258 LKFW--------------------DIRDPFR-PLWDIH--PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVP  314 (568)
Q Consensus       258 v~lw--------------------D~~~~~~-~~~~~~--~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~  314 (568)
                      |...                    |..++.. ...++.  -+.-.|..++..+||+.++.+-..|.-.  |+..+- ..-
T Consensus       183 IethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~--d~ppLv-g~~  259 (366)
T COG3490         183 IETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRN--DLPPLV-GHF  259 (366)
T ss_pred             eecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCc--cCCcce-eec
Confidence            3333                    2222210 001111  2334566677777776554443222100  000000 000


Q ss_pred             CCCCCccCccccceEE----EecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEEcCCCeeeccCCCCCcceeeeecccCC
Q 008363          315 ATGKPFAGTKQQGLHL----VNCSSFAIWSVQVSRLTGMVAYCS-ADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTED  389 (568)
Q Consensus       315 ~~g~~~~~~~~~~l~~----~~~h~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~  389 (568)
                      ..|+++     +.+..    ...-..-|-+++.+.+..+++..+ ..+...+||..++.+..+..     ...|.-+...
T Consensus       260 ~~g~~l-----~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~-----l~daaGva~~  329 (366)
T COG3490         260 RKGEPL-----EFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA-----LPDAAGVAAA  329 (366)
T ss_pred             cCCCcC-----cccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc-----ccccccceec
Confidence            013222     11110    011223566788887655555444 55668899999998776521     1223344455


Q ss_pred             CCceEEcccCCCC
Q 008363          390 ESAITVNTPLDNT  402 (568)
Q Consensus       390 ~~~i~~~~~~~~~  402 (568)
                      .+.+.+.+....+
T Consensus       330 ~~gf~vssg~G~~  342 (366)
T COG3490         330 KGGFAVSSGQGRI  342 (366)
T ss_pred             cCceEEecCCceE
Confidence            5556666655555

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.80  E-value=0.28  Score=51.36  Aligned_cols=121  Identities=15%  Similarity=0.241  Sum_probs=73.6

Q ss_pred             CCcCccceEEEEccCCC--CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCC-----CCeeEEEEccCCCCCCCCc
Q 008363          176 GGTQSIPLTMEWSTSPP--HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADT-----LPIRAVSWAPAESDSDSAN  248 (568)
Q Consensus       176 ~h~~~V~~~v~~s~~~~--g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-----~~V~~v~~~p~~~~~~~~~  248 (568)
                      |...-| ..+.|.|.-.  .-.|++.-.-..|.||-+...... ..+.+..-..+-     ---..+.|+|..      .
T Consensus        54 GqFEhV-~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e-~~K~l~sQtcEi~e~~pvLpQGCVWHPk~------~  125 (671)
T PF15390_consen   54 GQFEHV-HGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTE-RNKLLMSQTCEIREPFPVLPQGCVWHPKK------A  125 (671)
T ss_pred             ecccee-eeeeecCcccCCCCceEEEeccceEEEEEeccCccc-cccceeeeeeeccCCcccCCCcccccCCC------c
Confidence            444556 8899996411  214555555789999998633211 112222211111     113467899997      6


Q ss_pred             EEEEEcCCC-EEEEECCCCCcce-eeeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEE
Q 008363          249 VILTAGHGG-LKFWDIRDPFRPL-WDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRIVS  305 (568)
Q Consensus       249 ~las~s~d~-v~lwD~~~~~~~~-~~~~~h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd  305 (568)
                      +|+.-.... -.+++++.....+ ..+ ...+.|.|.+|.+||+.|+++ +..=.-++||
T Consensus       126 iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd  184 (671)
T PF15390_consen  126 ILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWD  184 (671)
T ss_pred             eEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence            776655544 5667777654444 334 446789999999999998876 4444567887

>PRK02888 nitrous-oxide reductase; Validated

Probab=95.78  E-value=0.83  Score=49.08  Aligned_cols=107  Identities=8%  Similarity=-0.036  Sum_probs=66.9

Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-CC-EEEEECCCCCc
Q 008363          191 PPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-GG-LKFWDIRDPFR  268 (568)
Q Consensus       191 ~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~-v~lwD~~~~~~  268 (568)
                      ++|++...  .+++|.+.|..+... .....+..+.. ......|.++|+|      ++++.++. +. |.|.|+.+...
T Consensus       286 kdGK~~~V--~gn~V~VID~~t~~~-~~~~v~~yIPV-GKsPHGV~vSPDG------kylyVanklS~tVSVIDv~k~k~  355 (635)
T PRK02888        286 KAGKFKTI--GGSKVPVVDGRKAAN-AGSALTRYVPV-PKNPHGVNTSPDG------KYFIANGKLSPTVTVIDVRKLDD  355 (635)
T ss_pred             hCCCEEEE--CCCEEEEEECCcccc-CCcceEEEEEC-CCCccceEECCCC------CEEEEeCCCCCcEEEEEChhhhh
Confidence            45655554  256799999875100 00134444432 4457889999999      66665554 55 99999987521


Q ss_pred             -----------ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363          269 -----------PLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK  308 (568)
Q Consensus       269 -----------~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~  308 (568)
                                 .+....- ...-...+|.++|....+-.-|..|..|++..
T Consensus       356 ~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        356 LFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                       1112211 12234678999998666667799999999864

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.70  E-value=1.9  Score=44.10  Aligned_cols=182  Identities=14%  Similarity=0.176  Sum_probs=84.9

Q ss_pred             CCCCCcceEEEeecc----C--C-ceeeEEEEccCCCCcccccCcccEEEEEeCC------CcEEEEECCCCceeeEEec
Q 008363           84 PKDIALPRVVLCLAH----N--G-KVAWDVKWKPYNAVDCKCKQRLGYLAVLLGN------GSLEVWEVPLLRTMKAIYL  150 (568)
Q Consensus        84 ~~~~~~p~~~~~~~h----~--~-~~v~~v~~sp~~~~~~~~~~~~~~las~s~d------g~V~iwd~~~~~~~~~l~~  150 (568)
                      ..+...|++...+.-    .  + ..-+.+..-|+|          .+++++-.|      |-+.+.|-++.+.....  
T Consensus       106 ~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G----------~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~W--  173 (461)
T PF05694_consen  106 KTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDG----------RIMISALGDADGNGPGGFVLLDGETFEVKGRW--  173 (461)
T ss_dssp             -S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS------------EEEEEEEETTS-S--EEEEE-TTT--EEEE---
T ss_pred             CCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCc----------cEEEEeccCCCCCCCCcEEEEcCcccccccee--
Confidence            345667777775532    1  1 123345566777          577776432      45677777765544332  


Q ss_pred             cCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEe--------------------CCCeEEEEEc
Q 008363          151 SSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC--------------------HDGTVALWKF  210 (568)
Q Consensus       151 ~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs--------------------~Dg~I~iwd~  210 (568)
                                     +.       .......++.+-|.  |..+.++|..                    .-.++.+||+
T Consensus       174 ---------------e~-------~~~~~~~gYDfw~q--pr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~  229 (461)
T PF05694_consen  174 ---------------EK-------DRGPQPFGYDFWYQ--PRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDW  229 (461)
T ss_dssp             ----------------S-------B-TT------EEEE--TTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEET
T ss_pred             ---------------cc-------CCCCCCCCCCeEEc--CCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEEC
Confidence                           21       11111223777777  5566777753                    2357999999


Q ss_pred             cCCCCCCCCceeEEeeCCC--CCeeEEEEccCCCCCCCCcEEEEEcCCC-EE-EEECCCCC---cceeeeCC-----C--
Q 008363          211 VASDSSIDSRPLLCFSADT--LPIRAVSWAPAESDSDSANVILTAGHGG-LK-FWDIRDPF---RPLWDIHP-----A--  276 (568)
Q Consensus       211 ~~~~~~~~~~~~~~~~~h~--~~V~~v~~~p~~~~~~~~~~las~s~d~-v~-lwD~~~~~---~~~~~~~~-----h--  276 (568)
                      .+.      +.++++.--.  ..+..|.|..+-.   ...=|+.+-... |. +|....+.   +.+..+..     -  
T Consensus       230 ~~r------~~~Q~idLg~~g~~pLEvRflH~P~---~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l  300 (461)
T PF05694_consen  230 STR------KLLQTIDLGEEGQMPLEVRFLHDPD---ANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL  300 (461)
T ss_dssp             TTT------EEEEEEES-TTEEEEEEEEE-SSTT-----EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred             CCC------cEeeEEecCCCCCceEEEEecCCCC---ccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence            977      7777775432  2356677765430   113344444443 44 44433332   11222211     1  


Q ss_pred             ----------CCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccc
Q 008363          277 ----------PKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAA  310 (568)
Q Consensus       277 ----------~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~  310 (568)
                                ..-|+.|..|.|.++|..++. +|.|+.||+....
T Consensus       301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence                      345799999999999999877 9999999997644

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.66  E-value=3.3  Score=43.16  Aligned_cols=197  Identities=16%  Similarity=0.148  Sum_probs=102.3

Q ss_pred             EEEEccCCCCcccccCcccEEEEE-eCCC----cEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcC
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVL-LGNG----SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ  179 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~-s~dg----~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~  179 (568)
                      .+.++|++          ++||.+ +..|    .|+|+|+.+++.+.....                            .
T Consensus       128 ~~~~Spdg----------~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~----------------------------~  169 (414)
T PF02897_consen  128 GFSVSPDG----------KRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE----------------------------N  169 (414)
T ss_dssp             EEEETTTS----------SEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE----------------------------E
T ss_pred             eeeECCCC----------CEEEEEecCCCCceEEEEEEECCCCcCcCCccc----------------------------c
Confidence            57889999          666655 4444    499999999866543100                            0


Q ss_pred             ccceEEEEccCCCCCEEEEEeCCC-----------eEEEEEccCCCCCCCCceeEEeeCCCCC--eeEEEEccCCCCCCC
Q 008363          180 SIPLTMEWSTSPPHDYLLAGCHDG-----------TVALWKFVASDSSIDSRPLLCFSADTLP--IRAVSWAPAESDSDS  246 (568)
Q Consensus       180 ~V~~~v~~s~~~~g~~l~sgs~Dg-----------~I~iwd~~~~~~~~~~~~~~~~~~h~~~--V~~v~~~p~~~~~~~  246 (568)
                      .-+..+.|.  +++..|+....+.           .|..|.+.+...    .....|......  ...+..++++     
T Consensus       170 ~~~~~~~W~--~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~----~d~lvfe~~~~~~~~~~~~~s~d~-----  238 (414)
T PF02897_consen  170 PKFSSVSWS--DDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQS----EDELVFEEPDEPFWFVSVSRSKDG-----  238 (414)
T ss_dssp             EESEEEEEC--TTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GG----G-EEEEC-TTCTTSEEEEEE-TTS-----
T ss_pred             cccceEEEe--CCCCEEEEEEeCcccccccCCCCcEEEEEECCCChH----hCeeEEeecCCCcEEEEEEecCcc-----
Confidence            001348999  7777766555433           377778765521    323455443333  5678889998     


Q ss_pred             CcEEEE-EcC--C-C-EEEEECCCC---CcceeeeCCCCCCe-EEEEEcCCCCEEEEEe---CCCcEEEEEccccccCCC
Q 008363          247 ANVILT-AGH--G-G-LKFWDIRDP---FRPLWDIHPAPKFI-YGLDWLPDPGCVILSF---DDGAMRIVSLLKAAYDVP  314 (568)
Q Consensus       247 ~~~las-~s~--d-~-v~lwD~~~~---~~~~~~~~~h~~~i-~~l~~sp~~~~l~s~~---~dg~I~lwd~~~~~~~~~  314 (568)
                       ++|+. ...  + . +.+.|+...   ......+......+ ..+... .+.+++.+.   ..+.|.-.++.....   
T Consensus       239 -~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~---  313 (414)
T PF02897_consen  239 -RYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSP---  313 (414)
T ss_dssp             -SEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSG---
T ss_pred             -cEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEeccccccc---
Confidence             56543 322  3 4 888898874   22333333323333 444444 444444442   256677777744220   


Q ss_pred             CCCCCccCccccceEEEecCCCCEEEEEEecCCCEEE-EEeCCC--eEEEEEcC
Q 008363          315 ATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVA-YCSADG--TVHRFQLT  365 (568)
Q Consensus       315 ~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~-s~s~Dg--~v~iwd~~  365 (568)
                        +        .....+..|...+.-..+...+.+|+ ..-.++  .|+++++.
T Consensus       314 --~--------~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  314 --A--------EWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             --G--------GEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred             --c--------cceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence              0        01124455555333333444454444 444444  47888887

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.59  E-value=2.8  Score=41.68  Aligned_cols=127  Identities=12%  Similarity=0.011  Sum_probs=74.9

Q ss_pred             CCeeEEEEccCCCCCCCCcEEEEEcC------C----CEEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-C
Q 008363          230 LPIRAVSWAPAESDSDSANVILTAGH------G----GLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-D  298 (568)
Q Consensus       230 ~~V~~v~~~p~~~~~~~~~~las~s~------d----~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-d  298 (568)
                      ...+.+...|+|      .+.++...      .    .=.||-+.-....+..+..+-..-+.|+||||++.|+.+-. .
T Consensus       111 ~r~ND~~v~pdG------~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~  184 (307)
T COG3386         111 NRPNDGVVDPDG------RIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA  184 (307)
T ss_pred             CCCCceeEcCCC------CEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence            346788889998      56555433      1    12344444221444444444444489999999998888744 6


Q ss_pred             CcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCC-eEEEEEcCCCeeecc
Q 008363          299 GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADG-TVHRFQLTAKAVEKD  372 (568)
Q Consensus       299 g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg-~v~iwd~~~~~~~~~  372 (568)
                      +.|+-|++...      +|....   ......+....+..-.++...+|.+.+++..+| .|.+|+.. ++....
T Consensus       185 ~~i~r~~~d~~------~g~~~~---~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~  249 (307)
T COG3386         185 NRIHRYDLDPA------TGPIGG---RRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGE  249 (307)
T ss_pred             CeEEEEecCcc------cCccCC---cceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEE
Confidence            88888888531      122210   011122333445556778877887776555554 89999988 544443

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.58  E-value=0.55  Score=50.82  Aligned_cols=107  Identities=16%  Similarity=0.190  Sum_probs=68.9

Q ss_pred             EEEEEcCCC--EEEEECCCCCcceeeeCCCCCCeEEEEEc--CCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcc
Q 008363          249 VILTAGHGG--LKFWDIRDPFRPLWDIHPAPKFIYGLDWL--PDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTK  324 (568)
Q Consensus       249 ~las~s~d~--v~lwD~~~~~~~~~~~~~h~~~i~~l~~s--p~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~  324 (568)
                      .+|....++  +.|||.+.........-...+.|..+.|.  |+++.+++.|..+.|.+|--....+..  .+     ..
T Consensus        42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~--~~-----p~  114 (631)
T PF12234_consen   42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN--KG-----PS  114 (631)
T ss_pred             cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc--CC-----cc
Confidence            555555544  99999997732221111457789999985  689999999999999999653322110  11     11


Q ss_pred             ccceEE--EecCC-CCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          325 QQGLHL--VNCSS-FAIWSVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       325 ~~~l~~--~~~h~-~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                      ..++..  +..|+ .+|.+..|.++|.+++.+  +..+.|++-
T Consensus       115 w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  115 WAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             cceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence            123332  23444 689999999988766555  467888765

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.54  E-value=0.031  Score=51.35  Aligned_cols=102  Identities=11%  Similarity=0.076  Sum_probs=60.0

Q ss_pred             CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEE-EEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcce
Q 008363          193 HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAV-SWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPL  270 (568)
Q Consensus       193 g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v-~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~  270 (568)
                      +..+++|+.+|.|.+|.....     ......+..-...|.++ .--.++      .+..+++.++ |+.|.+.-. +.+
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~-----g~~~d~~~s~~e~i~~~Ip~~~~~------~~~c~~~~dg~ir~~n~~p~-k~~  137 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLE-----GAHSDRVCSGEESIDLGIPNGRDS------SLGCVGAQDGRIRACNIKPN-KVL  137 (238)
T ss_pred             CceEEeecccceEEEecCCcc-----chHHHhhhcccccceecccccccc------ceeEEeccCCceeeeccccC-cee
Confidence            468999999999999998722     11111111112223332 222232      5788888888 999999854 555


Q ss_pred             eeeCCCC-CCeEEEEEcCCCCEEEEE--eCCCcEEEEEc
Q 008363          271 WDIHPAP-KFIYGLDWLPDPGCVILS--FDDGAMRIVSL  306 (568)
Q Consensus       271 ~~~~~h~-~~i~~l~~sp~~~~l~s~--~~dg~I~lwd~  306 (568)
                      -....|. .++..+..+..+++|.++  |.|..++.|++
T Consensus       138 g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v  176 (238)
T KOG2444|consen  138 GYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV  176 (238)
T ss_pred             eeeccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence            5555555 444444444455555555  55666666666

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.38  E-value=0.057  Score=49.69  Aligned_cols=104  Identities=18%  Similarity=0.264  Sum_probs=61.6

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD  202 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D  202 (568)
                      .-|++|+.+|.|.+|+......+....                         ..-...|-+.|.  ...++.+..+++.|
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~-------------------------~s~~e~i~~~Ip--~~~~~~~~c~~~~d  123 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGAHSDRV-------------------------CSGEESIDLGIP--NGRDSSLGCVGAQD  123 (238)
T ss_pred             ceEEeecccceEEEecCCccchHHHhh-------------------------hcccccceeccc--cccccceeEEeccC
Confidence            578999999999999887411111100                         111112201222  12345588999999


Q ss_pred             CeEEEEEccCCCCCCCCceeEEeeCCC-CCeeEEEEccCCCCCCCCcEEEEE--cCCC-EEEEECCC
Q 008363          203 GTVALWKFVASDSSIDSRPLLCFSADT-LPIRAVSWAPAESDSDSANVILTA--GHGG-LKFWDIRD  265 (568)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~~~~~~las~--s~d~-v~lwD~~~  265 (568)
                      |.|+.|++...      +.+.....|+ .++..+.....+      .+++.+  |.|. +++|++..
T Consensus       124 g~ir~~n~~p~------k~~g~~g~h~~~~~e~~ivv~sd------~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  124 GRIRACNIKPN------KVLGYVGQHNFESGEELIVVGSD------EFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             CceeeeccccC------ceeeeeccccCCCcceeEEecCC------ceEEeeccccchhhhhcchhh
Confidence            99999999865      5555555566 344444444444      566666  5565 77777653

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.22  E-value=2.4  Score=45.34  Aligned_cols=202  Identities=11%  Similarity=0.131  Sum_probs=104.4

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD  202 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D  202 (568)
                      +.+.+++.++.|.-.|..+++.+-.+......                   .......+...+...   ++..++.++.+
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~-------------------~~~~~~~~~~g~~~~---~~~~V~v~~~~  119 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPA-------------------DRGCCDVVNRGVAYW---DPRKVFFGTFD  119 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCc-------------------cccccccccCCcEEc---cCCeEEEecCC
Confidence            46777888899999999988766443111000                   000000000111211   22588888899


Q ss_pred             CeEEEEEccCCCCCCCCceeEEeeCCCCC-----e-eEEEEccCCCCCCCCcEEEEEc---------CCC-EEEEECCCC
Q 008363          203 GTVALWKFVASDSSIDSRPLLCFSADTLP-----I-RAVSWAPAESDSDSANVILTAG---------HGG-LKFWDIRDP  266 (568)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~-----V-~~v~~~p~~~~~~~~~~las~s---------~d~-v~lwD~~~~  266 (568)
                      |.|.-+|..++      +.+-.+......     + .+..+.. +       +++.++         .++ |..+|..++
T Consensus       120 g~v~AlD~~TG------~~~W~~~~~~~~~~~~~i~ssP~v~~-~-------~v~vg~~~~~~~~~~~~g~v~alD~~TG  185 (488)
T cd00216         120 GRLVALDAETG------KQVWKFGNNDQVPPGYTMTGAPTIVK-K-------LVIIGSSGAEFFACGVRGALRAYDVETG  185 (488)
T ss_pred             CeEEEEECCCC------CEeeeecCCCCcCcceEecCCCEEEC-C-------EEEEeccccccccCCCCcEEEEEECCCC
Confidence            99999999877      555444322110     1 1111221 2       333332         345 888898887


Q ss_pred             CcceeeeCCC-C-------------------CCe-EEEEEcCCCCEEEEEeCCC------------------cEEEEEcc
Q 008363          267 FRPLWDIHPA-P-------------------KFI-YGLDWLPDPGCVILSFDDG------------------AMRIVSLL  307 (568)
Q Consensus       267 ~~~~~~~~~h-~-------------------~~i-~~l~~sp~~~~l~s~~~dg------------------~I~lwd~~  307 (568)
                       +.++.+... .                   ..+ ...++.+.+..++.++.++                  .|.-+|. 
T Consensus       186 -~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~-  263 (488)
T cd00216         186 -KLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDA-  263 (488)
T ss_pred             -ceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcC-
Confidence             555544321 1                   011 1345555567788877665                  6777787 


Q ss_pred             ccccCCCCCCCCccCccccc--eEEEecCCCCEE-EEEEecCC---CEEEEEeCCCeEEEEEcCCCeee
Q 008363          308 KAAYDVPATGKPFAGTKQQG--LHLVNCSSFAIW-SVQVSRLT---GMVAYCSADGTVHRFQLTAKAVE  370 (568)
Q Consensus       308 ~~~~~~~~~g~~~~~~~~~~--l~~~~~h~~~V~-~l~~sp~~---~~l~s~s~Dg~v~iwd~~~~~~~  370 (568)
                             .+|+.++......  +..+.+...++. .+. .-++   .+++.++.+|.+...|..+++..
T Consensus       264 -------~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~  324 (488)
T cd00216         264 -------DTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLI  324 (488)
T ss_pred             -------CCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEe
Confidence                   3576653100000  000011111111 110 0123   26788888999999999988654

The alignment model contains an 8-bladed beta-propeller.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.10  E-value=0.064  Score=59.51  Aligned_cols=100  Identities=17%  Similarity=0.203  Sum_probs=70.3

Q ss_pred             CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCccee
Q 008363          193 HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLW  271 (568)
Q Consensus       193 g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~  271 (568)
                      +..++.|+..|.|...|+...     ..++..-..-.++|++++|+.+|      .+++.|-.+| |.+||+... ..+.
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~n-----L~~~~~ne~v~~~Vtsvafn~dg------~~l~~G~~~G~V~v~D~~~~-k~l~  166 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGN-----LGPLHQNERVQGPVTSVAFNQDG------SLLLAGLGDGHVTVWDMHRA-KILK  166 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcc-----cchhhcCCccCCcceeeEecCCC------ceeccccCCCcEEEEEccCC-ccee
Confidence            458999999999999988753     12322222346789999999999      7888888888 999999976 6666


Q ss_pred             eeCCCCCCeE---EEEEcCCCCEEEEEeCCCcEEEEEc
Q 008363          272 DIHPAPKFIY---GLDWLPDPGCVILSFDDGAMRIVSL  306 (568)
Q Consensus       272 ~~~~h~~~i~---~l~~sp~~~~l~s~~~dg~I~lwd~  306 (568)
                      .+..|..+.+   .+.|..++..++++...|.  +|.+
T Consensus       167 ~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  167 VITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            6655544443   3344445566777666665  5665

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.09  E-value=1  Score=47.40  Aligned_cols=156  Identities=13%  Similarity=0.188  Sum_probs=91.0

Q ss_pred             cCccceEEEEccCCCCCEEEEEe---CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363          178 TQSIPLTMEWSTSPPHDYLLAGC---HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG  254 (568)
Q Consensus       178 ~~~V~~~v~~s~~~~g~~l~sgs---~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s  254 (568)
                      ..++ ..++|-   ||+.++-..   .+|.+++=         +...+..|    ..|..+.|.|-+. ...|.+||.-.
T Consensus        19 iHPv-hGlaWT---DGkqVvLT~L~l~~gE~kfG---------ds~viGqF----EhV~GlsW~P~~~-~~~paLLAVQH   80 (671)
T PF15390_consen   19 IHPV-HGLAWT---DGKQVVLTDLQLHNGEPKFG---------DSKVIGQF----EHVHGLSWAPPCT-ADTPALLAVQH   80 (671)
T ss_pred             hccc-cceEec---CCCEEEEEeeeeeCCccccC---------CccEeecc----ceeeeeeecCccc-CCCCceEEEec
Confidence            3455 789998   776554332   22332221         22334444    4599999999862 33456777766


Q ss_pred             CCCEEEEECCCCC----cceeeeC---CCCCCe--EEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccc
Q 008363          255 HGGLKFWDIRDPF----RPLWDIH---PAPKFI--YGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQ  325 (568)
Q Consensus       255 ~d~v~lwD~~~~~----~~~~~~~---~h~~~i--~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~  325 (568)
                      ...|.+|-+.-..    +.+..-.   ...-+|  ..+.|+|....|++-.....-.+++++.-       +..++    
T Consensus        81 kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d-------~srVk----  149 (671)
T PF15390_consen   81 KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCD-------SSRVK----  149 (671)
T ss_pred             cceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeC-------CceEE----
Confidence            6669999987321    1111110   111222  46789999888877665444456777541       21110    


Q ss_pred             cceEEEecCCCCEEEEEEecCCCEEEEE-eCCCeEEEEEcCC
Q 008363          326 QGLHLVNCSSFAIWSVQVSRLTGMVAYC-SADGTVHRFQLTA  366 (568)
Q Consensus       326 ~~l~~~~~h~~~V~~l~~sp~~~~l~s~-s~Dg~v~iwd~~~  366 (568)
                         ..+ ...+.|.|.+|.+||+.|+.+ +..=.-+|||-..
T Consensus       150 ---aDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  150 ---ADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             ---Eec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence               123 356789999999999665544 4445578898643

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.09  E-value=1.2  Score=48.55  Aligned_cols=155  Identities=13%  Similarity=0.114  Sum_probs=84.8

Q ss_pred             ccceEEEEccCCCCCEEEEEe------CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363          180 SIPLTMEWSTSPPHDYLLAGC------HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA  253 (568)
Q Consensus       180 ~V~~~v~~s~~~~g~~l~sgs------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~  253 (568)
                      .+ ...+.+  ++|+.++..-      .|+.-.||-...+.     .......+.  ....-.|+|++      ..|++.
T Consensus       351 ~v-sspaiS--pdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-----~~~~lt~g~--~~t~PsWspDG------~~lw~v  414 (591)
T PRK13616        351 NI-TSAALS--RSGRQVAAVVTLGRGAPDPASSLWVGPLGG-----VAVQVLEGH--SLTRPSWSLDA------DAVWVV  414 (591)
T ss_pred             Cc-ccceEC--CCCCEEEEEEeecCCCCCcceEEEEEeCCC-----cceeeecCC--CCCCceECCCC------CceEEE
Confidence            44 667777  8888877665      24444444433221     122222232  37788999998      566666


Q ss_pred             cCC-C-EEE-----------EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCc
Q 008363          254 GHG-G-LKF-----------WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPF  320 (568)
Q Consensus       254 s~d-~-v~l-----------wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~  320 (568)
                      ..+ . +++           .++..+ ....   ...+.|..+.|||||..|+... ++.|++--+....     .|. .
T Consensus       415 ~dg~~~~~v~~~~~~gql~~~~vd~g-e~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~-----~G~-~  483 (591)
T PRK13616        415 VDGNTVVRVIRDPATGQLARTPVDAS-AVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTE-----DGQ-Y  483 (591)
T ss_pred             ecCcceEEEeccCCCceEEEEeccCc-hhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCC-----CCc-e
Confidence            543 2 333           333322 1111   2255799999999999998876 4777774332211     232 1


Q ss_pred             cCccccceEEE-ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          321 AGTKQQGLHLV-NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       321 ~~~~~~~l~~~-~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      .   ......+ .+-...+.++.|..++.++ ++..++...+|.+.
T Consensus       484 ~---l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~  525 (591)
T PRK13616        484 A---LTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVN  525 (591)
T ss_pred             e---ecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEe
Confidence            0   0111122 2233446889999988855 55555555566553

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.08  E-value=4.5  Score=42.18  Aligned_cols=30  Identities=23%  Similarity=0.238  Sum_probs=26.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 008363          277 PKFIYGLDWLPDPGCVILSFDDGAMRIVSL  306 (568)
Q Consensus       277 ~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~  306 (568)
                      .+++..|+.||++++|+.-..+|.+.+...
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ss  245 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSS  245 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence            467999999999999999999999988865

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.05  E-value=0.38  Score=49.11  Aligned_cols=103  Identities=12%  Similarity=0.174  Sum_probs=63.9

Q ss_pred             CCCCEEEEEe---------CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEE
Q 008363          191 PPHDYLLAGC---------HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFW  261 (568)
Q Consensus       191 ~~g~~l~sgs---------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lw  261 (568)
                      ||+++++...         ..+.+.|||+.++      .. ..+......+....|+|+|      +.+|-.....|.++
T Consensus         2 ~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~------~~-~~l~~~~~~~~~~~~sP~g------~~~~~v~~~nly~~   68 (353)
T PF00930_consen    2 PDGKFVLFATNYTKQWRHSFKGDYYIYDIETG------EI-TPLTPPPPKLQDAKWSPDG------KYIAFVRDNNLYLR   68 (353)
T ss_dssp             TTSSEEEEEEEEEEESSSEEEEEEEEEETTTT------EE-EESS-EETTBSEEEE-SSS------TEEEEEETTEEEEE
T ss_pred             CCCCeEEEEECcEEeeeeccceeEEEEecCCC------ce-EECcCCccccccceeecCC------CeeEEEecCceEEE
Confidence            5666666532         2467899999876      22 2222225678999999999      88888877669999


Q ss_pred             ECCCCCcceeeeCCC----------------CCCeEEEEEcCCCCEEEEEeC-CCcEEEEEc
Q 008363          262 DIRDPFRPLWDIHPA----------------PKFIYGLDWLPDPGCVILSFD-DGAMRIVSL  306 (568)
Q Consensus       262 D~~~~~~~~~~~~~h----------------~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~  306 (568)
                      ++.++.....+..+.                -+.-..+-||||+++|+.... +..|..+.+
T Consensus        69 ~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~  130 (353)
T PF00930_consen   69 DLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL  130 (353)
T ss_dssp             SSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred             ECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEe
Confidence            987662211222220                011256889999999998744 666777766

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.03  E-value=2.5  Score=46.18  Aligned_cols=106  Identities=16%  Similarity=0.084  Sum_probs=59.0

Q ss_pred             eEEEEccCCCCCEEEEEeCC------------CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHD------------GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI  250 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~D------------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l  250 (568)
                      +.-.|+  |+|..|++....            +.+.+.++..+      ....   ...+.|..+.|+|+|      ..+
T Consensus       400 t~PsWs--pDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~g------e~~~---~~~g~Issl~wSpDG------~Ri  462 (591)
T PRK13616        400 TRPSWS--LDADAVWVVVDGNTVVRVIRDPATGQLARTPVDAS------AVAS---RVPGPISELQLSRDG------VRA  462 (591)
T ss_pred             CCceEC--CCCCceEEEecCcceEEEeccCCCceEEEEeccCc------hhhh---ccCCCcCeEEECCCC------CEE
Confidence            667888  787777766532            22333333322      1111   224579999999999      666


Q ss_pred             EEEcCCCEEE---EECCCCCcce---eeeC-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 008363          251 LTAGHGGLKF---WDIRDPFRPL---WDIH-PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSL  306 (568)
Q Consensus       251 as~s~d~v~l---wD~~~~~~~~---~~~~-~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~  306 (568)
                      |....+.|.+   -....+...+   ..+. .-...+.++.|.+++..+ ++..++...+|.+
T Consensus       463 A~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        463 AMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             EEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence            6555433665   4433332112   1122 223346889999999854 5555444455554

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=94.85  E-value=5.4  Score=41.13  Aligned_cols=184  Identities=14%  Similarity=0.070  Sum_probs=109.0

Q ss_pred             eEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC---CC-
Q 008363          183 LTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH---GG-  257 (568)
Q Consensus       183 ~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~---d~-  257 (568)
                      ..++.+  +.+. .+++...+..|.+.|....      ........ ......+++++++      ..+..+..   +. 
T Consensus        77 ~~i~v~--~~~~~vyv~~~~~~~v~vid~~~~------~~~~~~~v-G~~P~~~~~~~~~------~~vYV~n~~~~~~~  141 (381)
T COG3391          77 AGVAVN--PAGNKVYVTTGDSNTVSVIDTATN------TVLGSIPV-GLGPVGLAVDPDG------KYVYVANAGNGNNT  141 (381)
T ss_pred             cceeeC--CCCCeEEEecCCCCeEEEEcCccc------ceeeEeee-ccCCceEEECCCC------CEEEEEecccCCce
Confidence            566665  5666 5555556689999996654      34443322 1256789999998      44444433   45 


Q ss_pred             EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCC
Q 008363          258 LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSF  336 (568)
Q Consensus       258 v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~  336 (568)
                      +.+.|..+. ........-..+ ..++++|+|..++... .++.|.+.|.....-..   +.        ....+.... 
T Consensus       142 vsvid~~t~-~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~---~~--------~~~~~~~~~-  207 (381)
T COG3391         142 VSVIDAATN-KVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR---GS--------VGSLVGVGT-  207 (381)
T ss_pred             EEEEeCCCC-eEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec---cc--------cccccccCC-
Confidence            888888876 444333322233 8899999999877775 68999999974321000   00        000112222 


Q ss_pred             CEEEEEEecCCCEEEEEeCC---CeEEEEEcCCCeeecc-CCCCCcceeeeecccCCCCceEEc
Q 008363          337 AIWSVQVSRLTGMVAYCSAD---GTVHRFQLTAKAVEKD-HSRNRPMHFLCGSVTEDESAITVN  396 (568)
Q Consensus       337 ~V~~l~~sp~~~~l~s~s~D---g~v~iwd~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~i~~~  396 (568)
                      .-..+.++|++.++......   +.+...|..++..... ...... ...-..+.+++..+.+.
T Consensus       208 ~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~  270 (381)
T COG3391         208 GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVA  270 (381)
T ss_pred             CCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEE
Confidence            33678999999755544433   5899999987765543 122221 11222566777766654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.82  E-value=0.53  Score=50.94  Aligned_cols=104  Identities=17%  Similarity=0.246  Sum_probs=68.8

Q ss_pred             EeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEE
Q 008363          128 LLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVAL  207 (568)
Q Consensus       128 ~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~i  207 (568)
                      -+....+.|||...+.....-                        . ....+.| ..++|...|+|+.|++.+..+.|.+
T Consensus        47 ~~~~~~LtIWD~~~~~lE~~~------------------------~-f~~~~~I-~dLDWtst~d~qsiLaVGf~~~v~l  100 (631)
T PF12234_consen   47 DSSRSELTIWDTRSGVLEYEE------------------------S-FSEDDPI-RDLDWTSTPDGQSILAVGFPHHVLL  100 (631)
T ss_pred             ECCCCEEEEEEcCCcEEEEee------------------------e-ecCCCce-eeceeeecCCCCEEEEEEcCcEEEE
Confidence            334456899999886533221                        0 2345677 8999999999999999999999999


Q ss_pred             EEccCCC---CCCCCceeEE--eeCCC-CCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECC
Q 008363          208 WKFVASD---SSIDSRPLLC--FSADT-LPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIR  264 (568)
Q Consensus       208 wd~~~~~---~~~~~~~~~~--~~~h~-~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~  264 (568)
                      +.-..-.   ......+++.  +..|+ .+|.+..|.++|       .|+.|+...+.|+|-.
T Consensus       101 ~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-------~LvV~sGNqlfv~dk~  156 (631)
T PF12234_consen  101 YTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-------TLVVGSGNQLFVFDKW  156 (631)
T ss_pred             EEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC-------eEEEEeCCEEEEECCC
Confidence            8642110   0001223332  34455 679999999998       6666666568888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA02713 hypothetical protein; Provisional

Probab=94.81  E-value=1.1  Score=48.75  Aligned_cols=152  Identities=7%  Similarity=-0.011  Sum_probs=77.3

Q ss_pred             CCCEEEEEeCCC-----eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC----------
Q 008363          192 PHDYLLAGCHDG-----TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG----------  256 (568)
Q Consensus       192 ~g~~l~sgs~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d----------  256 (568)
                      +|.+.+.|+.++     ++..||..+..+    ..+..+.........+++  ++      .+++.||.+          
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W----~~~~~mp~~r~~~~~~~~--~g------~IYviGG~~~~~~~~~~~~  418 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKW----KMLPDMPIALSSYGMCVL--DQ------YIYIIGGRTEHIDYTSVHH  418 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeE----EECCCCCcccccccEEEE--CC------EEEEEeCCCcccccccccc
Confidence            567888888764     478899887644    222121111111112222  34      677777643          


Q ss_pred             -------------C-EEEEECCCCCc-ceeeeCCCCCCeEEEEEcCCCCEEEEEeCC------CcEEEEEccccccCCCC
Q 008363          257 -------------G-LKFWDIRDPFR-PLWDIHPAPKFIYGLDWLPDPGCVILSFDD------GAMRIVSLLKAAYDVPA  315 (568)
Q Consensus       257 -------------~-v~lwD~~~~~~-~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d------g~I~lwd~~~~~~~~~~  315 (568)
                                   . +..||..+... .+..+...... .+++. -+++..+.||.+      ..|..||....      
T Consensus       419 ~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~------  490 (557)
T PHA02713        419 MNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTY------  490 (557)
T ss_pred             cccccccccccccceEEEECCCCCeEeecCCCCccccc-CcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCC------
Confidence                         2 66788775421 11111111111 12222 236666667654      23567877430      


Q ss_pred             CCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCC--eEEEEEcCCCeeecc
Q 008363          316 TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADG--TVHRFQLTAKAVEKD  372 (568)
Q Consensus       316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg--~v~iwd~~~~~~~~~  372 (568)
                       .+.      ..+..+.........+.+  ++.+.++||.||  .+-.||..+.++..-
T Consensus       491 -~~W------~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~  540 (557)
T PHA02713        491 -NGW------ELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHI  540 (557)
T ss_pred             -CCe------eEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccch
Confidence             111      112233322223233333  678889999888  788888877776654

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.66  E-value=4.5  Score=39.06  Aligned_cols=154  Identities=16%  Similarity=0.107  Sum_probs=86.6

Q ss_pred             eEEEEccCCCCCEEEEEe-CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363          183 LTMEWSTSPPHDYLLAGC-HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF  260 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l  260 (568)
                      .+.+++  +++..+|... .++.-.||-.....     .....+.+  ..+..-.|++++      .+.+....+. .++
T Consensus        27 ~s~AvS--~dg~~~A~v~~~~~~~~L~~~~~~~-----~~~~~~~g--~~l~~PS~d~~g------~~W~v~~~~~~~~~   91 (253)
T PF10647_consen   27 TSPAVS--PDGSRVAAVSEGDGGRSLYVGPAGG-----PVRPVLTG--GSLTRPSWDPDG------WVWTVDDGSGGVRV   91 (253)
T ss_pred             cceEEC--CCCCeEEEEEEcCCCCEEEEEcCCC-----cceeeccC--CccccccccCCC------CEEEEEcCCCceEE
Confidence            778888  8888776655 23333444433331     12222222  367788999998      5655555444 666


Q ss_pred             EE-CCCCCcceeeeC--CCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363          261 WD-IRDPFRPLWDIH--PAPKFIYGLDWLPDPGCVILSF---DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS  334 (568)
Q Consensus       261 wD-~~~~~~~~~~~~--~h~~~i~~l~~sp~~~~l~s~~---~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h  334 (568)
                      +. ...+......+.  .-.+.|..+.+||||..++...   .++.|++--+....     .|.+.  .-..++......
T Consensus        92 ~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~-----~g~~~--~l~~~~~~~~~~  164 (253)
T PF10647_consen   92 VRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDG-----DGVPR--RLTGPRRVAPPL  164 (253)
T ss_pred             EEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCC-----CCCcc--eeccceEecccc
Confidence            63 233321111121  1122799999999999888765   35778777664322     12110  000222333344


Q ss_pred             CCCEEEEEEecCCCEEEEEeCCCe
Q 008363          335 SFAIWSVQVSRLTGMVAYCSADGT  358 (568)
Q Consensus       335 ~~~V~~l~~sp~~~~l~s~s~Dg~  358 (568)
                      ...+..+.|.+++.+++.+...+.
T Consensus       165 ~~~v~~v~W~~~~~L~V~~~~~~~  188 (253)
T PF10647_consen  165 LSDVTDVAWSDDSTLVVLGRSAGG  188 (253)
T ss_pred             cCcceeeeecCCCEEEEEeCCCCC
Confidence            568899999999887777665443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.60  E-value=5.9  Score=40.20  Aligned_cols=169  Identities=15%  Similarity=0.140  Sum_probs=81.7

Q ss_pred             EEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC---CE--EEEECCCCCcceeeeCCCCC-
Q 008363          205 VALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG---GL--KFWDIRDPFRPLWDIHPAPK-  278 (568)
Q Consensus       205 I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d---~v--~lwD~~~~~~~~~~~~~h~~-  278 (568)
                      |...|+.++      +....+ .-...+.-+.|+|..     |.+|+-|.++   .|  |||-++.....+..+..|.. 
T Consensus       170 i~~idl~tG------~~~~v~-~~~~wlgH~~fsP~d-----p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~  237 (386)
T PF14583_consen  170 IFTIDLKTG------ERKVVF-EDTDWLGHVQFSPTD-----PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEG  237 (386)
T ss_dssp             EEEEETTT--------EEEEE-EESS-EEEEEEETTE-----EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TT
T ss_pred             EEEEECCCC------ceeEEE-ecCccccCcccCCCC-----CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCC
Confidence            445566654      333333 335678889999997     6888888775   23  78877765555555544432 


Q ss_pred             -CeEEEEEcCCCCEEEEEeC-----CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEE
Q 008363          279 -FIYGLDWLPDPGCVILSFD-----DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAY  352 (568)
Q Consensus       279 -~i~~l~~sp~~~~l~s~~~-----dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s  352 (568)
                       .+..=-|.|||..|.--+.     +..|.-+|+.+        ++.      ..+...    .....+--+++|.+++-
T Consensus       238 e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t--------~~~------~~~~~~----p~~~H~~ss~Dg~L~vG  299 (386)
T PF14583_consen  238 ESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT--------GER------RRLMEM----PWCSHFMSSPDGKLFVG  299 (386)
T ss_dssp             EEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT----------E------EEEEEE-----SEEEEEE-TTSSEEEE
T ss_pred             cccccccccCCCCEEEEEeecCCCCceEEEeeCCCC--------CCc------eEEEeC----CceeeeEEcCCCCEEEe
Confidence             2345569999988776322     34566666633        322      111111    13345556678887766


Q ss_pred             EeCCC----------------eEEEEEcCCCeeecc---------CCCCCcceeeeecccCCCCceEEcccCCCCC
Q 008363          353 CSADG----------------TVHRFQLTAKAVEKD---------HSRNRPMHFLCGSVTEDESAITVNTPLDNTP  403 (568)
Q Consensus       353 ~s~Dg----------------~v~iwd~~~~~~~~~---------~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~  403 (568)
                      =+.|.                .|+++++..+....-         ....+...-.-.++++|+..+...+.....|
T Consensus       300 DG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~  375 (386)
T PF14583_consen  300 DGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPP  375 (386)
T ss_dssp             EE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-
T ss_pred             cCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCc
Confidence            55542                566778876553311         0011111112235889999888776655444

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.57  E-value=1.8  Score=40.79  Aligned_cols=100  Identities=13%  Similarity=0.147  Sum_probs=67.7

Q ss_pred             CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceee
Q 008363          194 DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWD  272 (568)
Q Consensus       194 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~  272 (568)
                      .+++.|+..+.+.--|..++..    .-...+   ...|.+-+.- -+      ++++.|...+ +++.+..++ ...+.
T Consensus        24 T~v~igSHs~~~~avd~~sG~~----~We~il---g~RiE~sa~v-vg------dfVV~GCy~g~lYfl~~~tG-s~~w~   88 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNL----IWEAIL---GVRIECSAIV-VG------DFVVLGCYSGGLYFLCVKTG-SQIWN   88 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcE----Eeehhh---CceeeeeeEE-EC------CEEEEEEccCcEEEEEecch-hheee
Confidence            5788899999999999887732    111122   2333333333 24      5788888887 999999988 55544


Q ss_pred             eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363          273 IHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK  308 (568)
Q Consensus       273 ~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~  308 (568)
                      +.....--......+++..|.+|+.|++.+..|.+.
T Consensus        89 f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~  124 (354)
T KOG4649|consen   89 FVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT  124 (354)
T ss_pred             eeehhhhccceEEcCCCceEEEecCCCcEEEecccc
Confidence            432222113455678899999999999999999854

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=94.54  E-value=7.6  Score=41.58  Aligned_cols=26  Identities=8%  Similarity=-0.078  Sum_probs=21.2

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEE
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAI  148 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l  148 (568)
                      ..++.++.+|.|.-+|..+++.+-..
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~  136 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKF  136 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeee
Confidence            46777888999999999998877554

The alignment model contains an 8-bladed beta-propeller.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.48  E-value=0.14  Score=34.89  Aligned_cols=31  Identities=16%  Similarity=0.250  Sum_probs=28.4

Q ss_pred             CCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          335 SFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       335 ~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      ...|..++|+|...+||.++.||.|.++.++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            3568999999999999999999999999984

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.45  E-value=0.059  Score=58.61  Aligned_cols=111  Identities=16%  Similarity=0.141  Sum_probs=69.3

Q ss_pred             eEEEEccC-CCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEE-----------EccCCCCCCCCcEE
Q 008363          183 LTMEWSTS-PPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVS-----------WAPAESDSDSANVI  250 (568)
Q Consensus       183 ~~v~~s~~-~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~-----------~~p~~~~~~~~~~l  250 (568)
                      .-|.|+|. ++.-++..+-.+++|++..+...       ....|.+|...+..++           .+|+|      ..|
T Consensus       184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra-------~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG------tv~  250 (1283)
T KOG1916|consen  184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRA-------LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDG------TVF  250 (1283)
T ss_pred             ceeeecccccccceeeeccCCCceeEeeechH-------HHHHHHhcCCCcccHHHHhhchhhheeeCCCC------cEE
Confidence            44666654 33356777778899998887754       1234556777666554           47888      899


Q ss_pred             EEEcCCC-EEEEECCCCC----cceeeeCCCCC-CeEEEEEcCC---------CCEEEEEeC-CCcEEEEEc
Q 008363          251 LTAGHGG-LKFWDIRDPF----RPLWDIHPAPK-FIYGLDWLPD---------PGCVILSFD-DGAMRIVSL  306 (568)
Q Consensus       251 as~s~d~-v~lwD~~~~~----~~~~~~~~h~~-~i~~l~~sp~---------~~~l~s~~~-dg~I~lwd~  306 (568)
                      |.+..|| +++|-+.-..    +++.....|.+ +-.|..|+.+         ..+++++++ +..+++|..
T Consensus       251 a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~  322 (1283)
T KOG1916|consen  251 AWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE  322 (1283)
T ss_pred             EEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence            9999998 8888664221    55666667763 2223223321         245566655 566888876

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=94.39  E-value=5.3  Score=38.92  Aligned_cols=150  Identities=15%  Similarity=0.078  Sum_probs=87.9

Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcce
Q 008363          191 PPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPL  270 (568)
Q Consensus       191 ~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~  270 (568)
                      ..++.|+.|+.+| |.++++...     .......  +...|..+...+.-      +.|+.-++..++++++..-....
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~-----~~~~~i~--~~~~I~ql~vl~~~------~~llvLsd~~l~~~~L~~l~~~~   70 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDP-----SKPTRIL--KLSSITQLSVLPEL------NLLLVLSDGQLYVYDLDSLEPVS   70 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCC-----ccceeEe--ecceEEEEEEeccc------CEEEEEcCCccEEEEchhhcccc
Confidence            3568999999998 899998322     1333332  23349999999987      67777666449999987653211


Q ss_pred             ee-------------eCCCCCCeEEEE--EcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCC
Q 008363          271 WD-------------IHPAPKFIYGLD--WLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS  335 (568)
Q Consensus       271 ~~-------------~~~h~~~i~~l~--~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~  335 (568)
                      ..             .......+..++  -.+.+...++......|.+|......      ....     ..+..+. -.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~------~~f~-----~~~ke~~-lp  138 (275)
T PF00780_consen   71 TSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPR------NSFS-----KLLKEIS-LP  138 (275)
T ss_pred             ccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCc------cccc-----ceeEEEE-cC
Confidence            00             111223344444  12344444555556689999885421      1100     1123433 33


Q ss_pred             CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363          336 FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV  369 (568)
Q Consensus       336 ~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~  369 (568)
                      ..+.+++|.  +..|+.|..+ ...+.|+.++..
T Consensus       139 ~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~  169 (275)
T PF00780_consen  139 DPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSP  169 (275)
T ss_pred             CCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCc
Confidence            677889997  5667777655 477788875543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.25  E-value=2.5  Score=46.37  Aligned_cols=108  Identities=13%  Similarity=0.116  Sum_probs=68.7

Q ss_pred             CCCEEEEEeCCCeEEEEEccC-------C-------CCCCCCceeEEeeCCCCCeeEEEEc--cCCCCCCCCcEEEEEcC
Q 008363          192 PHDYLLAGCHDGTVALWKFVA-------S-------DSSIDSRPLLCFSADTLPIRAVSWA--PAESDSDSANVILTAGH  255 (568)
Q Consensus       192 ~g~~l~sgs~Dg~I~iwd~~~-------~-------~~~~~~~~~~~~~~h~~~V~~v~~~--p~~~~~~~~~~las~s~  255 (568)
                      ....|+.+..||.|.+|.+..       .       ......+|...+.. ...+++++++  ...      ++||.++.
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~------rlIAVSsN  185 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKS------RLIAVSSN  185 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcc------eEEEEecC
Confidence            557999999999999997621       0       00011234444433 3468999998  555      78888877


Q ss_pred             CC-EEEEECCC--CCcceeeeCCCCCCeEEEEEcCCC---C---EEEEEeCCCcEEEEEc
Q 008363          256 GG-LKFWDIRD--PFRPLWDIHPAPKFIYGLDWLPDP---G---CVILSFDDGAMRIVSL  306 (568)
Q Consensus       256 d~-v~lwD~~~--~~~~~~~~~~h~~~i~~l~~sp~~---~---~l~s~~~dg~I~lwd~  306 (568)
                      .. |.||-...  .......-..|...|-+|+|.++.   .   .|++++-.|.+-+|++
T Consensus       186 s~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  186 SQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             CceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            76 77765443  211111122355668899998754   2   6667777999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.18  E-value=0.17  Score=34.57  Aligned_cols=30  Identities=23%  Similarity=0.525  Sum_probs=27.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 008363          277 PKFIYGLDWLPDPGCVILSFDDGAMRIVSL  306 (568)
Q Consensus       277 ~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~  306 (568)
                      ...|.+++|+|....|+.++.+|.|.+|.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            456899999999999999999999999998

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.77  E-value=3  Score=40.05  Aligned_cols=55  Identities=11%  Similarity=0.263  Sum_probs=45.0

Q ss_pred             EEccCCCCCCCCcEEEEEcCC-----C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe
Q 008363          236 SWAPAESDSDSANVILTAGHG-----G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF  296 (568)
Q Consensus       236 ~~~p~~~~~~~~~~las~s~d-----~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~  296 (568)
                      .|+|+|      .+|...-.|     | |-|||.+.....+..+..|.-.-..+.|.+||+.|+.+.
T Consensus       120 vfs~dG------~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         120 VFSPDG------RLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             ccCCCC------cEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence            589999      677665432     5 999999988788888888887778999999999998864

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.64  E-value=8.1  Score=38.22  Aligned_cols=153  Identities=19%  Similarity=0.237  Sum_probs=73.6

Q ss_pred             cCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC
Q 008363          178 TQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG  257 (568)
Q Consensus       178 ~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~  257 (568)
                      ...+ ..+.-+  ++|.+++++..-....-||--...+    .+.  -..-...|.+|.|.|++      .+.+.+ .++
T Consensus       144 ~gs~-~~~~r~--~dG~~vavs~~G~~~~s~~~G~~~w----~~~--~r~~~~riq~~gf~~~~------~lw~~~-~Gg  207 (302)
T PF14870_consen  144 SGSI-NDITRS--SDGRYVAVSSRGNFYSSWDPGQTTW----QPH--NRNSSRRIQSMGFSPDG------NLWMLA-RGG  207 (302)
T ss_dssp             ---E-EEEEE---TTS-EEEEETTSSEEEEE-TT-SS-----EEE--E--SSS-EEEEEE-TTS-------EEEEE-TTT
T ss_pred             ccee-EeEEEC--CCCcEEEEECcccEEEEecCCCccc----eEE--ccCccceehhceecCCC------CEEEEe-CCc
Confidence            3455 666655  8898888876655566777553311    222  22346789999999998      666655 666


Q ss_pred             -EEEEECCCCC----cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363          258 -LKFWDIRDPF----RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN  332 (568)
Q Consensus       258 -v~lwD~~~~~----~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~  332 (568)
                       |++=+.....    .++..+....-.+..++|.+++...++|+ .|.+. ...+        .|+--     +......
T Consensus       208 ~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~D--------gGktW-----~~~~~~~  272 (302)
T PF14870_consen  208 QIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VSTD--------GGKTW-----QKDRVGE  272 (302)
T ss_dssp             EEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE-EESS--------TTSS------EE-GGGT
T ss_pred             EEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE-EeCC--------CCccc-----eECcccc
Confidence             8887722211    11111212223378999999877666555 45442 2221        24332     1111111


Q ss_pred             cCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 008363          333 CSSFAIWSVQVSRLTGMVAYCSADGTVHRF  362 (568)
Q Consensus       333 ~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iw  362 (568)
                      .-...++.|.|.... .-+..+.+|.|.-|
T Consensus       273 ~~~~n~~~i~f~~~~-~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  273 NVPSNLYRIVFVNPD-KGFVLGQDGVLLRY  301 (302)
T ss_dssp             TSSS---EEEEEETT-EEEEE-STTEEEEE
T ss_pred             CCCCceEEEEEcCCC-ceEEECCCcEEEEe
Confidence            223457888887654 44555668887665

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.40  E-value=11  Score=39.02  Aligned_cols=45  Identities=16%  Similarity=-0.048  Sum_probs=35.6

Q ss_pred             eEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          328 LHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       328 l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                      ...+......+.+++.+|.+++.|+...=|.|.++|+.++.+.+.
T Consensus       300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrm  344 (415)
T PF14655_consen  300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRM  344 (415)
T ss_pred             EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhh
Confidence            344555566788999999999888888889999999987765544

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.09  E-value=4.6  Score=41.45  Aligned_cols=103  Identities=13%  Similarity=0.084  Sum_probs=57.0

Q ss_pred             ceEEEEccCCCCCEEEEEe-----------CCC-eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcE
Q 008363          182 PLTMEWSTSPPHDYLLAGC-----------HDG-TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV  249 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs-----------~Dg-~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~  249 (568)
                      |..|+|.  ++|+++++-.           ..+ .|.+++-..+.-  .......|.........|+|.+++       +
T Consensus        16 P~~ia~d--~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG--~~d~~~vfa~~l~~p~Gi~~~~~G-------l   84 (367)
T TIGR02604        16 PIAVCFD--ERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDG--KYDKSNVFAEELSMVTGLAVAVGG-------V   84 (367)
T ss_pred             CceeeEC--CCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCC--CcceeEEeecCCCCccceeEecCC-------E
Confidence            4788988  8887776643           223 677776432211  112233443334456889998875       5


Q ss_pred             EEEEcCCCEE-EEECCCCC------cce-eeeCC----CCCCeEEEEEcCCCCEEEEEe
Q 008363          250 ILTAGHGGLK-FWDIRDPF------RPL-WDIHP----APKFIYGLDWLPDPGCVILSF  296 (568)
Q Consensus       250 las~s~d~v~-lwD~~~~~------~~~-~~~~~----h~~~i~~l~~sp~~~~l~s~~  296 (568)
                      +++ ....|. +.|.....      ..+ ..+..    +......++|.|||.+.++-+
T Consensus        85 yV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        85 YVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             EEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            554 344544 44554211      112 12222    234467899999998766555

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.07  E-value=1.4  Score=49.75  Aligned_cols=143  Identities=9%  Similarity=0.019  Sum_probs=83.3

Q ss_pred             CCCCEE--EEEeCCCeEEEEEccCCCCCC--CCceeEE---eeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEE
Q 008363          191 PPHDYL--LAGCHDGTVALWKFVASDSSI--DSRPLLC---FSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWD  262 (568)
Q Consensus       191 ~~g~~l--~sgs~Dg~I~iwd~~~~~~~~--~~~~~~~---~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD  262 (568)
                      +|+...  +..+.+-.|..||+..-....  ...++..   .........++.|+|.-     +..+|.+..|. |++.-
T Consensus       110 ~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v-----p~n~av~l~dlsl~V~~  184 (1405)
T KOG3630|consen  110 HDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV-----PLNSAVDLSDLSLRVKS  184 (1405)
T ss_pred             cCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc-----cchhhhhccccchhhhh
Confidence            354433  333444478899987432211  0112111   11123446788999986     45667777777 88877


Q ss_pred             CCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEE
Q 008363          263 IRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQ  342 (568)
Q Consensus       263 ~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~  342 (568)
                      +......+..+ ......++++|+|.|..+++|-..|++.-|-..         ++...  .+.+.-.+.  ...|.+|+
T Consensus       185 ~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~---------leik~--~ip~Pp~~e--~yrvl~v~  250 (1405)
T KOG3630|consen  185 TKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS---------LEIKS--EIPEPPVEE--NYRVLSVT  250 (1405)
T ss_pred             hhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecc---------cceee--cccCCCcCC--CcceeEEE
Confidence            76443333332 334567999999999999999999999888652         21110  000111111  47899999


Q ss_pred             EecCCCEEEE
Q 008363          343 VSRLTGMVAY  352 (568)
Q Consensus       343 ~sp~~~~l~s  352 (568)
                      |-....+|++
T Consensus       251 Wl~t~eflvv  260 (1405)
T KOG3630|consen  251 WLSTQEFLVV  260 (1405)
T ss_pred             EecceeEEEE
Confidence            9876555544

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.06  E-value=7.5  Score=40.52  Aligned_cols=109  Identities=15%  Similarity=0.189  Sum_probs=65.5

Q ss_pred             EccCCCCCEEEEE-eCCC----eEEEEEccCCCCCCCCceeE-EeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC----
Q 008363          187 WSTSPPHDYLLAG-CHDG----TVALWKFVASDSSIDSRPLL-CFSADTLPIRAVSWAPAESDSDSANVILTAGHG----  256 (568)
Q Consensus       187 ~s~~~~g~~l~sg-s~Dg----~I~iwd~~~~~~~~~~~~~~-~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d----  256 (568)
                      |.++|+|++||.+ +..|    +|+++|+.++      +.+. .+..  .....+.|.+++.     .++.+...+    
T Consensus       129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg------~~l~d~i~~--~~~~~~~W~~d~~-----~~~y~~~~~~~~~  195 (414)
T PF02897_consen  129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG------KFLPDGIEN--PKFSSVSWSDDGK-----GFFYTRFDEDQRT  195 (414)
T ss_dssp             EEETTTSSEEEEEEEETTSSEEEEEEEETTTT------EEEEEEEEE--EESEEEEECTTSS-----EEEEEECSTTTSS
T ss_pred             eeECCCCCEEEEEecCCCCceEEEEEEECCCC------cCcCCcccc--cccceEEEeCCCC-----EEEEEEeCccccc
Confidence            3344899988865 3334    5999999977      4433 2221  1123399999972     445554222    


Q ss_pred             -----C--EEEEECCCCCcc-eeeeCCCCC-C-eEEEEEcCCCCEEEEEeC---C-CcEEEEEccc
Q 008363          257 -----G--LKFWDIRDPFRP-LWDIHPAPK-F-IYGLDWLPDPGCVILSFD---D-GAMRIVSLLK  308 (568)
Q Consensus       257 -----~--v~lwD~~~~~~~-~~~~~~h~~-~-i~~l~~sp~~~~l~s~~~---d-g~I~lwd~~~  308 (568)
                           .  |++|.+.+.... ...+..... . ...+..++|+++|+....   + ..|++.|+..
T Consensus       196 ~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  196 SDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             -CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             ccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence                 3  899999877433 233433222 2 568999999999887533   3 4577778754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.53  E-value=11  Score=36.60  Aligned_cols=160  Identities=16%  Similarity=0.229  Sum_probs=99.0

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      +.++.|+|+.          +.|.+......-.||=...|+.++++..                        .+...  +
T Consensus        88 vS~LTynp~~----------rtLFav~n~p~~iVElt~~GdlirtiPL------------------------~g~~D--p  131 (316)
T COG3204          88 VSSLTYNPDT----------RTLFAVTNKPAAIVELTKEGDLIRTIPL------------------------TGFSD--P  131 (316)
T ss_pred             ccceeeCCCc----------ceEEEecCCCceEEEEecCCceEEEecc------------------------cccCC--h
Confidence            5599999999          6777777777777776667888877622                        22111  2


Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCc----eeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSR----PLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-  257 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~----~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-  257 (568)
                      -+++|.  .+|.+.++-=.++.+.++.+..........    ++......+...-.++|.|..      ..|..+-+.. 
T Consensus       132 E~Ieyi--g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~------~~l~~aKEr~P  203 (316)
T COG3204         132 ETIEYI--GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD------HRLFVAKERNP  203 (316)
T ss_pred             hHeEEe--cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC------ceEEEEEccCC
Confidence            567877  666666776778888888876552211111    111222225668899999998      6666666655 


Q ss_pred             EEEEECCCCCcce--eeeCCC-------CCCeEEEEEcCC-CCEEEEEeCCCcEEEEEc
Q 008363          258 LKFWDIRDPFRPL--WDIHPA-------PKFIYGLDWLPD-PGCVILSFDDGAMRIVSL  306 (568)
Q Consensus       258 v~lwD~~~~~~~~--~~~~~h-------~~~i~~l~~sp~-~~~l~s~~~dg~I~lwd~  306 (568)
                      +.|+-+......+  .....+       -..|.++.|++. +..|+.+.+++.|.-.|+
T Consensus       204 ~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~  262 (316)
T COG3204         204 IGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL  262 (316)
T ss_pred             cEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEec
Confidence            6666554332111  111111       123567888874 556666677888887777

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=92.51  E-value=7.8  Score=38.53  Aligned_cols=106  Identities=15%  Similarity=0.178  Sum_probs=65.9

Q ss_pred             ceEEEEccCCCCCEEEEEeC-CCeEEEEEccCCCCCCCC-ceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-C-
Q 008363          182 PLTMEWSTSPPHDYLLAGCH-DGTVALWKFVASDSSIDS-RPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-G-  257 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-~-  257 (568)
                      +..|+|+  |+++.|..+.. .+.|.-|++......... .....+..+.+..-.++...+|      ++.+++..+ + 
T Consensus       165 ~NGla~S--pDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG------~lw~~a~~~g~~  236 (307)
T COG3386         165 PNGLAFS--PDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG------NLWVAAVWGGGR  236 (307)
T ss_pred             cCceEEC--CCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC------CEEEecccCCce
Confidence            4889999  88877666654 478888887632111111 2223333455667788888888      677555444 3 


Q ss_pred             EEEEECCCCCcceeeeCCCCCCeEEEEEc-CCCCEEEEEeC
Q 008363          258 LKFWDIRDPFRPLWDIHPAPKFIYGLDWL-PDPGCVILSFD  297 (568)
Q Consensus       258 v~lwD~~~~~~~~~~~~~h~~~i~~l~~s-p~~~~l~s~~~  297 (568)
                      |.+|+.. + +.+..+.-....+++++|- |+.+.|++.+.
T Consensus       237 v~~~~pd-G-~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         237 VVRFNPD-G-KLLGEIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             EEEECCC-C-cEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence            9999988 5 5554444333567777774 45566665544

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=92.39  E-value=11  Score=36.53  Aligned_cols=145  Identities=15%  Similarity=0.120  Sum_probs=81.6

Q ss_pred             CEEEEEeCCCeEEEEEccCCCCCCCC-ceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCC-ccee
Q 008363          194 DYLLAGCHDGTVALWKFVASDSSIDS-RPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPF-RPLW  271 (568)
Q Consensus       194 ~~l~sgs~Dg~I~iwd~~~~~~~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~-~~~~  271 (568)
                      ..|+++. ..+|.+|.......  .. ...+.+. -...+.+++|..        +.|+.|..++..+.|+.++. ..+.
T Consensus       106 ~~L~va~-kk~i~i~~~~~~~~--~f~~~~ke~~-lp~~~~~i~~~~--------~~i~v~~~~~f~~idl~~~~~~~l~  173 (275)
T PF00780_consen  106 RRLCVAV-KKKILIYEWNDPRN--SFSKLLKEIS-LPDPPSSIAFLG--------NKICVGTSKGFYLIDLNTGSPSELL  173 (275)
T ss_pred             eEEEEEE-CCEEEEEEEECCcc--cccceeEEEE-cCCCcEEEEEeC--------CEEEEEeCCceEEEecCCCCceEEe
Confidence            3444444 55999999876311  11 3444443 347789999994        46777777778899998652 2222


Q ss_pred             eeCC----------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEE
Q 008363          272 DIHP----------APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSV  341 (568)
Q Consensus       272 ~~~~----------h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l  341 (568)
                      ....          ...++..+.. +++.+|++  .|..-.+.|.         .|++..      -..+... ..+.++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~--~~~~g~fv~~---------~G~~~r------~~~i~W~-~~p~~~  234 (275)
T PF00780_consen  174 DPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC--YDNIGVFVNK---------NGEPSR------KSTIQWS-SAPQSV  234 (275)
T ss_pred             CccCCcchhhhcccCCCceEEEEe-CCceEEEE--ecceEEEEcC---------CCCcCc------ccEEEcC-CchhEE
Confidence            1111          1122333333 34555554  2344444554         354421      1233332 244566


Q ss_pred             EEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          342 QVSRLTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       342 ~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                      ++  ...||+..+. +.|-||++.++.+.+.
T Consensus       235 ~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~  262 (275)
T PF00780_consen  235 AY--SSPYLIAFSS-NSIEVRSLETGELVQT  262 (275)
T ss_pred             EE--ECCEEEEECC-CEEEEEECcCCcEEEE
Confidence            66  3467777776 4599999999877665

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.10  E-value=10  Score=41.72  Aligned_cols=153  Identities=13%  Similarity=0.181  Sum_probs=93.0

Q ss_pred             CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee----------------CCCCCeeEEEEccCCCCCCCCcEEEEEcCC
Q 008363          193 HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS----------------ADTLPIRAVSWAPAESDSDSANVILTAGHG  256 (568)
Q Consensus       193 g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~----------------~h~~~V~~v~~~p~~~~~~~~~~las~s~d  256 (568)
                      ..+|++|. .+.|.||++..-......++...+.                .-...|+-|....-+    +..+|+.|.+|
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg----~~EVLl~c~Dd  123 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLG----GEEVLLLCTDD  123 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccC----CeeEEEEEecC
Confidence            55777766 6799999986432211111111110                011225555544444    35789999999


Q ss_pred             C-EEEEECCCC-------------------CcceeeeCCCCCCeEEEEEc--CCCCEEEEEeCCCcEEEEEccccccCCC
Q 008363          257 G-LKFWDIRDP-------------------FRPLWDIHPAPKFIYGLDWL--PDPGCVILSFDDGAMRIVSLLKAAYDVP  314 (568)
Q Consensus       257 ~-v~lwD~~~~-------------------~~~~~~~~~h~~~i~~l~~s--p~~~~l~s~~~dg~I~lwd~~~~~~~~~  314 (568)
                      | |.+|.+..-                   ..|...+. ....+++|+++  ...++||+++....|.||-.....    
T Consensus       124 G~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~----  198 (717)
T PF08728_consen  124 GDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVD----  198 (717)
T ss_pred             CeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccc----
Confidence            9 999966211                   01223332 24468899998  888888888888888888664321    


Q ss_pred             CCCCCccCccccceEEEecCCCCEEEEEEecCC---C---EEEEEeCCCeEEEEEc
Q 008363          315 ATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT---G---MVAYCSADGTVHRFQL  364 (568)
Q Consensus       315 ~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~---~---~l~s~s~Dg~v~iwd~  364 (568)
                        .+...       ..-..|...|-+|+|-++.   .   .|++++-.|.+.+|++
T Consensus       199 --~r~~~-------~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  199 --ERFYH-------VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             --ccccc-------ccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence              11110       0011255678889998764   2   7888999999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=91.98  E-value=6.3  Score=40.51  Aligned_cols=152  Identities=16%  Similarity=0.227  Sum_probs=71.7

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeC--------------------CCcEEEEECCCCceeeEEeccCCccCCCCce
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLG--------------------NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRF  161 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~--------------------dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~  161 (568)
                      .-+++-|.|..          +.++|...                    -.+|.+||+.+.+.++++.            
T Consensus       182 ~gYDfw~qpr~----------nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~id------------  239 (461)
T PF05694_consen  182 FGYDFWYQPRH----------NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTID------------  239 (461)
T ss_dssp             ----EEEETTT----------TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEE------------
T ss_pred             CCCCeEEcCCC----------CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEe------------
Confidence            34566777766          67777642                    3589999999988887762            


Q ss_pred             EEEeecceecccccCCcCccceEEEEccCCCCCEEEEEe-CCCeEEEEEc-cCCCCCCCCceeEEeeC------------
Q 008363          162 VKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC-HDGTVALWKF-VASDSSIDSRPLLCFSA------------  227 (568)
Q Consensus       162 v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs-~Dg~I~iwd~-~~~~~~~~~~~~~~~~~------------  227 (568)
                                   .+..+.+|+.|.|...|+..+=++|+ -..+|..|-- ..+.+  ..+.+..+..            
T Consensus       240 -------------Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W--~a~kVi~ip~~~v~~~~lp~ml  304 (461)
T PF05694_consen  240 -------------LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEW--AAEKVIDIPAKKVEGWILPEML  304 (461)
T ss_dssp             -------------S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEE--EEEEEEEE--EE--SS---GGG
T ss_pred             -------------cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCe--eeeEEEECCCcccCcccccccc
Confidence                         22223334777776556655444333 3344444433 32221  1111112211            


Q ss_pred             -----CCCCeeEEEEccCCCCCCCCcEEE-EEcCCC-EEEEECCCCCcceeeeC---C---------------CCCCeEE
Q 008363          228 -----DTLPIRAVSWAPAESDSDSANVIL-TAGHGG-LKFWDIRDPFRPLWDIH---P---------------APKFIYG  282 (568)
Q Consensus       228 -----h~~~V~~v~~~p~~~~~~~~~~la-s~s~d~-v~lwD~~~~~~~~~~~~---~---------------h~~~i~~  282 (568)
                           -..-|++|..+.+.      ++|. ++-..| |+.||+.++..+...-+   +               -.+...-
T Consensus       305 ~~~~~~P~LitDI~iSlDD------rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqM  378 (461)
T PF05694_consen  305 KPFGAVPPLITDILISLDD------RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQM  378 (461)
T ss_dssp             GGG-EE------EEE-TTS-------EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----
T ss_pred             cccccCCCceEeEEEccCC------CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCe
Confidence                 02458999999998      5554 455567 99999999875553321   0               1122356


Q ss_pred             EEEcCCCCEEEEEe
Q 008363          283 LDWLPDPGCVILSF  296 (568)
Q Consensus       283 l~~sp~~~~l~s~~  296 (568)
                      |..|-||+.|+.++
T Consensus       379 vqlS~DGkRlYvTn  392 (461)
T PF05694_consen  379 VQLSLDGKRLYVTN  392 (461)
T ss_dssp             EEE-TTSSEEEEE-
T ss_pred             EEEccCCeEEEEEe
Confidence            77788888877764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=91.70  E-value=10  Score=41.35  Aligned_cols=150  Identities=13%  Similarity=0.080  Sum_probs=78.5

Q ss_pred             CCCEEEEEeCCCe-----EEEEEccCCCCCCCCceeEEeeCCCCCeeEEEE-ccCCCCCCCCcEEEEEcCC------C-E
Q 008363          192 PHDYLLAGCHDGT-----VALWKFVASDSSIDSRPLLCFSADTLPIRAVSW-APAESDSDSANVILTAGHG------G-L  258 (568)
Q Consensus       192 ~g~~l~sgs~Dg~-----I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~-~p~~~~~~~~~~las~s~d------~-v  258 (568)
                      +|.+.|+|+.||.     |-.||..+..+    ..+..+..   .....+. .-.+      .+++.||.+      . +
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W----~~va~m~~---~r~~~gv~~~~g------~iYi~GG~~~~~~~l~sv  446 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKW----TPVAPMLT---RRSGHGVAVLGG------KLYIIGGGDGSSNCLNSV  446 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcc----cccCCCCc---ceeeeEEEEECC------EEEEEcCcCCCccccceE
Confidence            5788999999975     77788877755    22222211   1122211 2233      677777754      2 6


Q ss_pred             EEEECCCCCc-ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCc-----EEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363          259 KFWDIRDPFR-PLWDIHPAPKFIYGLDWLPDPGCVILSFDDGA-----MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN  332 (568)
Q Consensus       259 ~lwD~~~~~~-~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~-----I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~  332 (568)
                      ..||..+... .+..+..-.... .++.. ++...+.||.|+.     |..||...        .+.      ..+..+.
T Consensus       447 e~YDP~t~~W~~~~~M~~~R~~~-g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~--------~~W------~~v~~m~  510 (571)
T KOG4441|consen  447 ECYDPETNTWTLIAPMNTRRSGF-GVAVL-NGKIYVVGGFDGTSALSSVERYDPET--------NQW------TMVAPMT  510 (571)
T ss_pred             EEEcCCCCceeecCCcccccccc-eEEEE-CCEEEEECCccCCCccceEEEEcCCC--------Cce------eEcccCc
Confidence            7788876641 112221111111 23322 4667777777763     66677743        111      1112222


Q ss_pred             cCCCCEEEEEEecCCCEEEEEeCCC-----eEEEEEcCCCeeecc
Q 008363          333 CSSFAIWSVQVSRLTGMVAYCSADG-----TVHRFQLTAKAVEKD  372 (568)
Q Consensus       333 ~h~~~V~~l~~sp~~~~l~s~s~Dg-----~v~iwd~~~~~~~~~  372 (568)
                      .....+..+.+  ++...++|+.||     +|-.||..+.++...
T Consensus       511 ~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~  553 (571)
T KOG4441|consen  511 SPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDTWTEV  553 (571)
T ss_pred             cccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCceeeC
Confidence            23333333333  467788888775     566777766666544

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.56  E-value=7.1  Score=43.59  Aligned_cols=83  Identities=16%  Similarity=0.135  Sum_probs=53.9

Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEccc-cccCC-CCCCCCccCccccceEEE--------ecCCCCEEEEEEecC-
Q 008363          278 KFIYGLDWLPDPGCVILSFDDGAMRIVSLLK-AAYDV-PATGKPFAGTKQQGLHLV--------NCSSFAIWSVQVSRL-  346 (568)
Q Consensus       278 ~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~-~~~~~-~~~g~~~~~~~~~~l~~~--------~~h~~~V~~l~~sp~-  346 (568)
                      -.|..|.++|+|++|+..|..|.+ |..+.. ...+. ...|+..     ...+++        ..+...|..+.|+|. 
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~-----i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s  158 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKE-----INCRTVPVDERFFTSNSSLEIKQVRWHPWS  158 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcc-----eeEEEEEechhhccCCCCceEEEEEEcCCC
Confidence            357899999999999999886644 444422 11100 0011110     111121        133457899999998 


Q ss_pred             --CCEEEEEeCCCeEEEEEcCC
Q 008363          347 --TGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       347 --~~~l~s~s~Dg~v~iwd~~~  366 (568)
                        +..|+.-..|+++++||+..
T Consensus       159 ~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  159 ESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             CCCCeEEEEecCCEEEEEecCC
Confidence              48999999999999999964

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA02713 hypothetical protein; Provisional

Probab=91.03  E-value=24  Score=38.51  Aligned_cols=54  Identities=7%  Similarity=0.110  Sum_probs=32.4

Q ss_pred             CCCEEEEEeCC------CeEEEEEcCC-CeeeccCCCCCcceeeeecccCCCCceEEcccCC
Q 008363          346 LTGMVAYCSAD------GTVHRFQLTA-KAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLD  400 (568)
Q Consensus       346 ~~~~l~s~s~D------g~v~iwd~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~  400 (568)
                      ++.+.+.||.+      ..+..||..+ ..+.... .-+.+...++....++...++|...+
T Consensus       463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~-~m~~~r~~~~~~~~~~~iyv~Gg~~~  523 (557)
T PHA02713        463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT-TTESRLSALHTILHDNTIMMLHCYES  523 (557)
T ss_pred             CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc-ccCcccccceeEEECCEEEEEeeecc
Confidence            46666777654      2467899887 5666542 33344555566666776666665433

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.29  E-value=9.2  Score=42.71  Aligned_cols=74  Identities=12%  Similarity=0.302  Sum_probs=53.0

Q ss_pred             CCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCC----------Ccce--eee--------CCCCCCeEEEEEcCC-
Q 008363          230 LPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDP----------FRPL--WDI--------HPAPKFIYGLDWLPD-  288 (568)
Q Consensus       230 ~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~----------~~~~--~~~--------~~h~~~i~~l~~sp~-  288 (568)
                      -.|..|.++|+|      .++|-.|..+|.|-.+...          ...+  .++        ..+...|..+.|+|. 
T Consensus        85 f~v~~i~~n~~g------~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s  158 (717)
T PF10168_consen   85 FEVHQISLNPTG------SLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWS  158 (717)
T ss_pred             eeEEEEEECCCC------CEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCC
Confidence            358899999999      8898888888666555321          0111  111        133457889999996 


Q ss_pred             --CCEEEEEeCCCcEEEEEcccc
Q 008363          289 --PGCVILSFDDGAMRIVSLLKA  309 (568)
Q Consensus       289 --~~~l~s~~~dg~I~lwd~~~~  309 (568)
                        +.+|++-..|+++|+||+.+.
T Consensus       159 ~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  159 ESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CCCCeEEEEecCCEEEEEecCCC
Confidence              588999999999999999653

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA03098 kelch-like protein; Provisional

Probab=90.20  E-value=22  Score=38.50  Aligned_cols=27  Identities=0%  Similarity=-0.096  Sum_probs=18.7

Q ss_pred             CCCEEEEEeCC-----CeEEEEEcCCCeeecc
Q 008363          346 LTGMVAYCSAD-----GTVHRFQLTAKAVEKD  372 (568)
Q Consensus       346 ~~~~l~s~s~D-----g~v~iwd~~~~~~~~~  372 (568)
                      ++.+++.||.+     ..|.+||..+..+...
T Consensus       487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~  518 (534)
T PHA03098        487 NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLF  518 (534)
T ss_pred             CCEEEEEcCCcCCcccceeEEEeCCCCEEEec
Confidence            56777777654     4688888887766544

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=90.19  E-value=1.3  Score=29.33  Aligned_cols=34  Identities=21%  Similarity=0.404  Sum_probs=24.7

Q ss_pred             CCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCC
Q 008363          230 LPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDP  266 (568)
Q Consensus       230 ~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~  266 (568)
                      +.|+++.|+|...   ...+|+-+-.-+ |.|+|+|+.
T Consensus         1 GAvR~~kFsP~~~---~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPG---GNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCC---cccEEEEEccCCeEEEEEcccC
Confidence            4689999998650   124677666666 999999964

It contains a characteristic DLL sequence motif.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.16  E-value=0.051  Score=55.28  Aligned_cols=144  Identities=16%  Similarity=0.284  Sum_probs=95.1

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW  261 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw  261 (568)
                      ....|-  +.+.-++.++.+..|..||-...       ..... ...+...+++|...+     +..++.+-..+ +.+|
T Consensus        38 i~~~w~--~e~~nlavaca~tiv~~YD~agq-------~~le~-n~tg~aldm~wDkeg-----dvlavlAek~~piylw  102 (615)
T KOG2247|consen   38 IIHRWR--PEGHNLAVACANTIVIYYDKAGQ-------VILEL-NPTGKALDMAWDKEG-----DVLAVLAEKTGPIYLW  102 (615)
T ss_pred             ceeeEe--cCCCceehhhhhhHHHhhhhhcc-------eeccc-CCchhHhhhhhcccc-----chhhhhhhcCCCeeec
Confidence            677888  55666888888999999996532       22222 234556778888877     23334444445 9999


Q ss_pred             ECCCCCcceeeeC-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec-CCCCEE
Q 008363          262 DIRDPFRPLWDIH-PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC-SSFAIW  339 (568)
Q Consensus       262 D~~~~~~~~~~~~-~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~-h~~~V~  339 (568)
                      |+.+.......+. .|..  .-+.|++....++.+...|.+.|++.+..        +.         ....| |...++
T Consensus       103 d~n~eytqqLE~gg~~s~--sll~wsKg~~el~ig~~~gn~viynhgts--------R~---------iiv~Gkh~RRgt  163 (615)
T KOG2247|consen  103 DVNSEYTQQLESGGTSSK--SLLAWSKGTPELVIGNNAGNIVIYNHGTS--------RR---------IIVMGKHQRRGT  163 (615)
T ss_pred             hhhhhhHHHHhccCcchH--HHHhhccCCccccccccccceEEEeccch--------hh---------hhhhccccccee
Confidence            9987653332332 2222  33889999999999999999999998431        11         12234 888999


Q ss_pred             EEEEecCCCEEEEEeCCCeEEE
Q 008363          340 SVQVSRLTGMVAYCSADGTVHR  361 (568)
Q Consensus       340 ~l~~sp~~~~l~s~s~Dg~v~i  361 (568)
                      +++|.+.+ +.+.++.|..+-+
T Consensus       164 q~av~lEd-~vil~dcd~~L~v  184 (615)
T KOG2247|consen  164 QIAVTLED-YVILCDCDNTLSV  184 (615)
T ss_pred             EEEecccc-eeeecCcHHHHHH
Confidence            99998854 4556666655443

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=90.16  E-value=0.69  Score=50.76  Aligned_cols=169  Identities=12%  Similarity=0.126  Sum_probs=91.7

Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCce---eEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRP---LLCFSADTLPIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~---~~~~~~h~~~V~~v~~~p~~~~~~~~~~la  251 (568)
                      .|..+.| ..++|... +...++  -.-|.+.||++.--.  ....+   +.........+.-|.|+|--.   +.-++.
T Consensus       129 kgf~G~v-~dl~fah~-~~pk~~--~~vg~lfVy~vd~l~--G~iq~~l~v~~~~p~gs~~~~V~wcp~~~---~~~~ic  199 (1283)
T KOG1916|consen  129 KGFPGGV-GDLQFAHT-KCPKGR--RLVGELFVYDVDVLQ--GEIQPQLEVTPITPYGSDPQLVSWCPIAV---NKVYIC  199 (1283)
T ss_pred             hcCCCCc-cccccccc-CChHHH--HHhhhhheeehHhhc--cccccceEEeecCcCCCCcceeeeccccc---ccceee
Confidence            4566666 66666321 111222  223678899986311  11222   222233345567778877541   113444


Q ss_pred             EEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEE-----------EcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCC
Q 008363          252 TAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLD-----------WLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKP  319 (568)
Q Consensus       252 s~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~-----------~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~  319 (568)
                      .+-.++ |++.......+  ..+.+|...+..++           .+|||..++..+.||.+++|.+.-       +|+.
T Consensus       200 ~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi-------~g~~  270 (1283)
T KOG1916|consen  200 YGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI-------TGKI  270 (1283)
T ss_pred             eccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee-------eccc
Confidence            444445 77766554323  23444655554433           689999999999999999998743       3443


Q ss_pred             ccCccccceEEEecCC-CCEEEEEEecCC---------CEEEEEe-CCCeEEEEEcC
Q 008363          320 FAGTKQQGLHLVNCSS-FAIWSVQVSRLT---------GMVAYCS-ADGTVHRFQLT  365 (568)
Q Consensus       320 ~~~~~~~~l~~~~~h~-~~V~~l~~sp~~---------~~l~s~s-~Dg~v~iwd~~  365 (568)
                      ..    .|++.++.|. .+-.|..|+.+.         .++++++ ....+++|.-.
T Consensus       271 ~~----rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a  323 (1283)
T KOG1916|consen  271 VH----RCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEA  323 (1283)
T ss_pred             cH----hhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeecc
Confidence            32    5667777776 333332233221         2334443 44568888754

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=89.73  E-value=26  Score=36.25  Aligned_cols=111  Identities=14%  Similarity=0.154  Sum_probs=61.3

Q ss_pred             CCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCC-c---ceeeeCC--CCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 008363          229 TLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPF-R---PLWDIHP--APKFIYGLDWLPDPGCVILSFDDGAMR  302 (568)
Q Consensus       229 ~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~-~---~~~~~~~--h~~~i~~l~~sp~~~~l~s~~~dg~I~  302 (568)
                      ...+.++.|.+++      .+++.+..+++ +|....+. .   .......  -...++.+.|.+++. +++++..|.|.
T Consensus       280 ~~~l~~v~~~~dg------~l~l~g~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~  351 (398)
T PLN00033        280 ARRIQNMGWRADG------GLWLLTRGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGGSGILL  351 (398)
T ss_pred             ccceeeeeEcCCC------CEEEEeCCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEECCCcEE
Confidence            4568899999998      67766644433 33333331 1   2222211  123488999998877 55556677776


Q ss_pred             EEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 008363          303 IVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRF  362 (568)
Q Consensus       303 lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iw  362 (568)
                      ...-         .|+..     +....-..-...++.+.|.++++.+++ +.+|.|..|
T Consensus       352 ~s~D---------~G~tW-----~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~  396 (398)
T PLN00033        352 RSTD---------GGKSW-----KRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRY  396 (398)
T ss_pred             EeCC---------CCcce-----eEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEe
Confidence            5432         24332     111111223456788998776555544 457777655

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=89.61  E-value=21  Score=38.95  Aligned_cols=156  Identities=12%  Similarity=0.026  Sum_probs=78.3

Q ss_pred             eEEEEccCCCCCEEEEEeCC-C-----eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC
Q 008363          183 LTMEWSTSPPHDYLLAGCHD-G-----TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG  256 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~D-g-----~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d  256 (568)
                      .+++..   ++.+.++|+.| |     ++..||.....+    ..+..+....... +++.. .|      .++|.||.|
T Consensus       326 ~~~~~~---~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W----~~~a~M~~~R~~~-~v~~l-~g------~iYavGG~d  390 (571)
T KOG4441|consen  326 VGVAVL---NGKLYVVGGYDSGSDRLSSVERYDPRTNQW----TPVAPMNTKRSDF-GVAVL-DG------KLYAVGGFD  390 (571)
T ss_pred             ccEEEE---CCEEEEEccccCCCcccceEEEecCCCCce----eccCCccCccccc-eeEEE-CC------EEEEEeccc
Confidence            444544   56789999999 3     577788877654    2222221111111 12212 23      688888876


Q ss_pred             C------EEEEECCCCCcc-eeeeCCCCCCeEEEEEcCCCCEEEEEeCCC------cEEEEEccccccCCCCCCCCccCc
Q 008363          257 G------LKFWDIRDPFRP-LWDIHPAPKFIYGLDWLPDPGCVILSFDDG------AMRIVSLLKAAYDVPATGKPFAGT  323 (568)
Q Consensus       257 ~------v~lwD~~~~~~~-~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg------~I~lwd~~~~~~~~~~~g~~~~~~  323 (568)
                      +      |-.||..+..-. +..+.......-.+.+  +|...++||.++      ++..||..+        +...   
T Consensus       391 g~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t--------~~W~---  457 (571)
T KOG4441|consen  391 GEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPET--------NTWT---  457 (571)
T ss_pred             cccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCC--------Ccee---
Confidence            3      677888765321 1112111111222222  477777777554      456677643        2211   


Q ss_pred             cccceEEEecCCCCEEEEEEecCCCEEEEEeCCCe-----EEEEEcCCCeeec
Q 008363          324 KQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGT-----VHRFQLTAKAVEK  371 (568)
Q Consensus       324 ~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~-----v~iwd~~~~~~~~  371 (568)
                      ...++.+-..+.+    ++ .-++.+.+.||.|+.     |..||..+..+..
T Consensus       458 ~~~~M~~~R~~~g----~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~  505 (571)
T KOG4441|consen  458 LIAPMNTRRSGFG----VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTM  505 (571)
T ss_pred             ecCCcccccccce----EE-EECCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence            0011111111111    22 225777888887763     6667776665544

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=89.32  E-value=6  Score=41.05  Aligned_cols=58  Identities=12%  Similarity=0.159  Sum_probs=46.1

Q ss_pred             cEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 008363          248 NVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLL  307 (568)
Q Consensus       248 ~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~  307 (568)
                      -++|.+|..| |++||--.- +.-..+.+....|..+..+.+|.+|++.+. .+|.+-|++
T Consensus       574 GyIa~as~kGDirLyDRig~-rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         574 GYIAAASRKGDIRLYDRIGK-RAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             ceEEEecCCCceeeehhhcc-hhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            3999999999 999997643 444456666788999999999999988775 567788874

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.18  E-value=14  Score=38.05  Aligned_cols=151  Identities=13%  Similarity=0.200  Sum_probs=93.6

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcce
Q 008363          192 PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPL  270 (568)
Q Consensus       192 ~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~  270 (568)
                      |.+..+.+...|.+.-|-+.....   .-++..-....++|.+|.|+++.      +.||.--.+. |.+++.......+
T Consensus        32 DaNkqlfavrSggatgvvvkgpnd---DVpiSfdm~d~G~I~SIkFSlDn------kilAVQR~~~~v~f~nf~~d~~~l  102 (657)
T KOG2377|consen   32 DANKQLFAVRSGGATGVVVKGPND---DVPISFDMDDKGEIKSIKFSLDN------KILAVQRTSKTVDFCNFIPDNSQL  102 (657)
T ss_pred             cCcceEEEEecCCeeEEEEeCCCC---CCCceeeecCCCceeEEEeccCc------ceEEEEecCceEEEEecCCCchhh
Confidence            444555555567777787764432   22333333456799999999998      8899888887 9999885432222


Q ss_pred             ---eeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC
Q 008363          271 ---WDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT  347 (568)
Q Consensus       271 ---~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~  347 (568)
                         .........|...+|+.. .-++.....| +-+|-+....               ..++..+.|...|.=..|.++.
T Consensus       103 ~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek---------------rslRlVks~~~nvnWy~yc~et  165 (657)
T KOG2377|consen  103 EYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK---------------RSLRLVKSHNLNVNWYMYCPET  165 (657)
T ss_pred             HHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh---------------hhhhhhhhcccCccEEEEcccc
Confidence               222233445889999876 4455555444 6677663322               3345667788888888888887


Q ss_pred             CEEEEEe--CCCeEEEEEcCCCe
Q 008363          348 GMVAYCS--ADGTVHRFQLTAKA  368 (568)
Q Consensus       348 ~~l~s~s--~Dg~v~iwd~~~~~  368 (568)
                      ..++.++  ...++.=+.+.++.
T Consensus       166 ~v~LL~t~~~~n~lnpf~~~~~~  188 (657)
T KOG2377|consen  166 AVILLSTTVLENVLNPFHFRAGT  188 (657)
T ss_pred             ceEeeeccccccccccEEEeece
Confidence            6554443  34455555555443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=89.07  E-value=28  Score=35.44  Aligned_cols=155  Identities=9%  Similarity=0.032  Sum_probs=71.4

Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc----------------
Q 008363          191 PPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG----------------  254 (568)
Q Consensus       191 ~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s----------------  254 (568)
                      ++++.|+-......|+-.|+.+.      +....+......+-...|..+.    ....++..-                
T Consensus        90 ~~~~~~~Yv~~~~~l~~vdL~T~------e~~~vy~~p~~~~g~gt~v~n~----d~t~~~g~e~~~~d~~~l~~~~~f~  159 (386)
T PF14583_consen   90 PDDRALYYVKNGRSLRRVDLDTL------EERVVYEVPDDWKGYGTWVANS----DCTKLVGIEISREDWKPLTKWKGFR  159 (386)
T ss_dssp             TTSSEEEEEETTTEEEEEETTT--------EEEEEE--TTEEEEEEEEE-T----TSSEEEEEEEEGGG-----SHHHHH
T ss_pred             cCCCeEEEEECCCeEEEEECCcC------cEEEEEECCcccccccceeeCC----CccEEEEEEEeehhccCccccHHHH
Confidence            56677765555678888898876      3333444445555545554322    014444321                


Q ss_pred             ------CCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEE-EeC---CC-cEEEEEccccccCCCCCCCCccC
Q 008363          255 ------HGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVIL-SFD---DG-AMRIVSLLKAAYDVPATGKPFAG  322 (568)
Q Consensus       255 ------~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s-~~~---dg-~I~lwd~~~~~~~~~~~g~~~~~  322 (568)
                            -.. |.-.|+.++.  ...+..-...+..+.|+|....+++ |-+   +. .-|||-++.       .|...  
T Consensus       160 e~~~a~p~~~i~~idl~tG~--~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~-------dg~~~--  228 (386)
T PF14583_consen  160 EFYEARPHCRIFTIDLKTGE--RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT-------DGSNV--  228 (386)
T ss_dssp             HHHHC---EEEEEEETTT----EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET-------TS-----
T ss_pred             HHHhhCCCceEEEEECCCCc--eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc-------CCCcc--
Confidence                  012 4555666652  2222233567788999996655554 422   33 237787753       22221  


Q ss_pred             ccccceEEEecCCCCEEEEEEecCCCEEEEEe-----CCCeEEEEEcCCCeee
Q 008363          323 TKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCS-----ADGTVHRFQLTAKAVE  370 (568)
Q Consensus       323 ~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s-----~Dg~v~iwd~~~~~~~  370 (568)
                         .++..-. -...+..=-|.|+|..|..-+     .+..|.-+|+.++..+
T Consensus       229 ---~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~  277 (386)
T PF14583_consen  229 ---KKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR  277 (386)
T ss_dssp             ---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred             ---eeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence               1121111 112334456888886665533     2556777778776543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.64  E-value=4.6  Score=45.93  Aligned_cols=98  Identities=14%  Similarity=0.186  Sum_probs=65.9

Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF  260 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l  260 (568)
                      +.++.|+|... ...++...|+.|++..+....     ..+..+ .-...+++++|+|.|      ..++.|-..| +.-
T Consensus       158 ~~~~~wnP~vp-~n~av~l~dlsl~V~~~~~~~-----~~v~s~-p~t~~~Tav~WSprG------KQl~iG~nnGt~vQ  224 (1405)
T KOG3630|consen  158 QLKNVWNPLVP-LNSAVDLSDLSLRVKSTKQLA-----QNVTSF-PVTNSQTAVLWSPRG------KQLFIGRNNGTEVQ  224 (1405)
T ss_pred             cccccccCCcc-chhhhhccccchhhhhhhhhh-----hhhccc-CcccceeeEEecccc------ceeeEecCCCeEEE
Confidence            37899998766 367778889999998876331     122222 335668999999999      8888888887 776


Q ss_pred             EECCCCCcceeeeC---C-CCCCeEEEEEcCCCCEEEE
Q 008363          261 WDIRDPFRPLWDIH---P-APKFIYGLDWLPDPGCVIL  294 (568)
Q Consensus       261 wD~~~~~~~~~~~~---~-h~~~i~~l~~sp~~~~l~s  294 (568)
                      |-..-.  ....+.   . ....|.+|+|.....++++
T Consensus       225 y~P~le--ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  225 YEPSLE--IKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             eecccc--eeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            654422  111111   1 1467899999977777665

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=88.47  E-value=1.5  Score=29.15  Aligned_cols=31  Identities=19%  Similarity=0.334  Sum_probs=25.1

Q ss_pred             CCeEEEEEcCCCC---EEEEEeCCCcEEEEEccc
Q 008363          278 KFIYGLDWLPDPG---CVILSFDDGAMRIVSLLK  308 (568)
Q Consensus       278 ~~i~~l~~sp~~~---~l~s~~~dg~I~lwd~~~  308 (568)
                      +.|.++.|+|...   +|+.+-.-|.|.|+|+|.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4688999998554   777777789999999983

It contains a characteristic DLL sequence motif.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=88.25  E-value=17  Score=37.33  Aligned_cols=109  Identities=12%  Similarity=-0.028  Sum_probs=55.6

Q ss_pred             CCeeEEEEccCCCCCCCCcEEEEEc-----------C-C-CEEEEECCCCC-c--ceeeeCCCCCCeEEEEEcCCCCEEE
Q 008363          230 LPIRAVSWAPAESDSDSANVILTAG-----------H-G-GLKFWDIRDPF-R--PLWDIHPAPKFIYGLDWLPDPGCVI  293 (568)
Q Consensus       230 ~~V~~v~~~p~~~~~~~~~~las~s-----------~-d-~v~lwD~~~~~-~--~~~~~~~h~~~i~~l~~sp~~~~l~  293 (568)
                      .....|+|.++|      +++++-.           . + .|.+++-.++. .  ....+...-...+.|++.+++  |+
T Consensus        14 ~~P~~ia~d~~G------~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--ly   85 (367)
T TIGR02604        14 RNPIAVCFDERG------RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VY   85 (367)
T ss_pred             CCCceeeECCCC------CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EE
Confidence            346788999998      7777642           1 2 36666543221 1  123333223345889999988  44


Q ss_pred             EEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec----CCCCEEEEEEecCCCEEEEEe
Q 008363          294 LSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC----SSFAIWSVQVSRLTGMVAYCS  354 (568)
Q Consensus       294 s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~----h~~~V~~l~~sp~~~~l~s~s  354 (568)
                      ++.....+++.|...   +....++..     ..+..+..    +......++|.|+|.+.++.+
T Consensus        86 V~~~~~i~~~~d~~g---dg~ad~~~~-----~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        86 VATPPDILFLRDKDG---DDKADGERE-----VLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             EeCCCeEEEEeCCCC---CCCCCCccE-----EEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            444443333334421   000011110     11112222    234467899999998777655

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=87.87  E-value=28  Score=33.87  Aligned_cols=147  Identities=17%  Similarity=0.169  Sum_probs=87.8

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc-CCCEEEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG-HGGLKFW  261 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s-~d~v~lw  261 (568)
                      ..+.++    +++...+..+.-++|.|+.+...    ..+..+-.-.+.-+++..+  |      ++...+. .+++.+.
T Consensus        90 ~Dv~vs----e~yvyvad~ssGL~IvDIS~P~s----P~~~~~lnt~gyaygv~vs--G------n~aYVadlddgfLiv  153 (370)
T COG5276          90 ADVRVS----EEYVYVADWSSGLRIVDISTPDS----PTLIGFLNTDGYAYGVYVS--G------NYAYVADLDDGFLIV  153 (370)
T ss_pred             heeEec----ccEEEEEcCCCceEEEeccCCCC----cceeccccCCceEEEEEec--C------CEEEEeeccCcEEEE
Confidence            456655    56777777788899999987632    1112221222434445444  4      5665555 5569999


Q ss_pred             ECCCCCcceee--eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecC---CC
Q 008363          262 DIRDPFRPLWD--IHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS---SF  336 (568)
Q Consensus       262 D~~~~~~~~~~--~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h---~~  336 (568)
                      |+.++..|...  +......-..++.|  |++-..+..|+-+.+.|+.+..++                 .|.+|   ..
T Consensus       154 dvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sP-----------------vli~~~n~g~  214 (370)
T COG5276         154 DVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSP-----------------VLIGSYNTGP  214 (370)
T ss_pred             ECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCC-----------------eEEEEEecCC
Confidence            99988766632  22223334567777  788888889999999999764422                 22222   22


Q ss_pred             CEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          337 AIWSVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       337 ~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                      .+.++..+++--+++..  +--+.+-|..+
T Consensus       215 g~~sv~vsdnr~y~vvy--~egvlivd~s~  242 (370)
T COG5276         215 GTYSVSVSDNRAYLVVY--DEGVLIVDVSG  242 (370)
T ss_pred             ceEEEEecCCeeEEEEc--ccceEEEecCC
Confidence            56777776654444443  33355555543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=87.69  E-value=25  Score=33.05  Aligned_cols=94  Identities=13%  Similarity=0.182  Sum_probs=58.9

Q ss_pred             eeEEEEccCCCCCCCCcEEEEEcCCC-EEEEEC--CCCC----cceeeeCC---CCCC-eEEEEEcCCCCEEEEEeCCCc
Q 008363          232 IRAVSWAPAESDSDSANVILTAGHGG-LKFWDI--RDPF----RPLWDIHP---APKF-IYGLDWLPDPGCVILSFDDGA  300 (568)
Q Consensus       232 V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~--~~~~----~~~~~~~~---h~~~-i~~l~~sp~~~~l~s~~~dg~  300 (568)
                      -+.++|+.+..     .+.++-+.+- |.-||.  .++.    +.+..+..   .... --.++...+|...+++-..++
T Consensus       160 sNgl~Wd~d~K-----~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~  234 (310)
T KOG4499|consen  160 SNGLAWDSDAK-----KFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGT  234 (310)
T ss_pred             CccccccccCc-----EEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcE
Confidence            45788987762     4444555565 877883  3331    22222221   1111 134455667888888888889


Q ss_pred             EEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecC
Q 008363          301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL  346 (568)
Q Consensus       301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~  346 (568)
                      |..+|.        .+|+.+        ..+.-....|++++|--.
T Consensus       235 V~~~dp--------~tGK~L--------~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  235 VQKVDP--------TTGKIL--------LEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             EEEECC--------CCCcEE--------EEEEcCCCceEEEEecCC
Confidence            999988        568665        577777889999999644

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=87.49  E-value=33  Score=34.32  Aligned_cols=159  Identities=15%  Similarity=0.136  Sum_probs=81.2

Q ss_pred             cCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCee-EEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCC
Q 008363          189 TSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIR-AVSWAPAESDSDSANVILTAGHGG-LKFWDIRDP  266 (568)
Q Consensus       189 ~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~-~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~  266 (568)
                      |..+ +-+.+-|.||++....+....... .+....|.....++. .-++...+      ..++-.+..| |+--|+...
T Consensus       144 P~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~dp~f~~~~~~~~~------~~~~F~Sy~G~v~~~dlsg~  215 (342)
T PF06433_consen  144 PSGN-RGFSMLCGDGSLLTVTLDADGKEA-QKSTKVFDPDDDPLFEHPAYSRDG------GRLYFVSYEGNVYSADLSGD  215 (342)
T ss_dssp             EEET-TEEEEEETTSCEEEEEETSTSSEE-EEEEEESSTTTS-B-S--EEETTT------TEEEEEBTTSEEEEEEETTS
T ss_pred             ecCC-CceEEEecCCceEEEEECCCCCEe-EeeccccCCCCcccccccceECCC------CeEEEEecCCEEEEEeccCC
Confidence            4444 468888899999999988442110 111112222222222 22333333      3444456666 888888765


Q ss_pred             Ccc-eeeeC--C--------CCCCeEEEEEcCCCCEEEEEe---C-----CCc--EEEEEccccccCCCCCCCCccCccc
Q 008363          267 FRP-LWDIH--P--------APKFIYGLDWLPDPGCVILSF---D-----DGA--MRIVSLLKAAYDVPATGKPFAGTKQ  325 (568)
Q Consensus       267 ~~~-~~~~~--~--------h~~~i~~l~~sp~~~~l~s~~---~-----dg~--I~lwd~~~~~~~~~~~g~~~~~~~~  325 (568)
                      ... ...+.  .        -++.-.-+++++....|++.-   .     |+.  |-+||+        .+++.      
T Consensus       216 ~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~--------~t~kr------  281 (342)
T PF06433_consen  216 SAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL--------KTHKR------  281 (342)
T ss_dssp             SEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEET--------TTTEE------
T ss_pred             cccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEEC--------CCCeE------
Confidence            311 11111  0        012223577776555555431   1     333  444455        23433      


Q ss_pred             cceEEEecCCCCEEEEEEecCC-CEEEEEe-CCCeEEEEEcCCCeeecc
Q 008363          326 QGLHLVNCSSFAIWSVQVSRLT-GMVAYCS-ADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       326 ~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s-~Dg~v~iwd~~~~~~~~~  372 (568)
                        +..+.. ..++.+|+++.+. .+|++.+ .++.|.+||..+++..+.
T Consensus       282 --v~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~  327 (342)
T PF06433_consen  282 --VARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS  327 (342)
T ss_dssp             --EEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred             --EEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence              344442 2457799999886 5676554 589999999999877654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=87.06  E-value=41  Score=34.97  Aligned_cols=154  Identities=13%  Similarity=0.044  Sum_probs=89.1

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCC----
Q 008363          192 PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPF----  267 (568)
Q Consensus       192 ~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~----  267 (568)
                      +.+.|++|+..|.++||+......... ..+... .-..+|..|..-+-.+ ......||.-.-..+.+|.+....    
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~-~lllE~-~l~~PILqv~~G~F~s-~~~~~~LaVLhP~kl~vY~v~~~~g~~~  112 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPE-DLLLET-QLKDPILQVECGKFVS-GSEDLQLAVLHPRKLSVYSVSLVDGTVE  112 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCc-cEEEEE-ecCCcEEEEEeccccC-CCCcceEEEecCCEEEEEEEEecCCCcc
Confidence            456999999999999999865432111 122222 3367888887654311 002246666555558888773221    


Q ss_pred             ----cceeeeCCC--CCCeEEEEEcCC-----CCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCC
Q 008363          268 ----RPLWDIHPA--PKFIYGLDWLPD-----PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSF  336 (568)
Q Consensus       268 ----~~~~~~~~h--~~~i~~l~~sp~-----~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~  336 (568)
                          -.+..+..|  ......+++-|-     ..+|++=+.||.+.+|+-+...+                 ..+-...-
T Consensus       113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f-----------------~~~lp~~l  175 (418)
T PF14727_consen  113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF-----------------SRFLPDFL  175 (418)
T ss_pred             cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE-----------------EEEcCCCC
Confidence                111122222  223345555442     24566668899999999754221                 11111111


Q ss_pred             CEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          337 AIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       337 ~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      -.-.+.|.+....|++++.+..|.-|.+.
T Consensus       176 lPgPl~Y~~~tDsfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  176 LPGPLCYCPRTDSFVTASSSWTLECYKYQ  204 (418)
T ss_pred             CCcCeEEeecCCEEEEecCceeEEEecHH
Confidence            22346788888889999999899888774

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=86.97  E-value=60  Score=36.77  Aligned_cols=24  Identities=4%  Similarity=-0.046  Sum_probs=21.0

Q ss_pred             EEEEEeCCCeEEEEEcCCCeeecc
Q 008363          349 MVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       349 ~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                      .|+.++.+|.++++|-.+++..-.
T Consensus       461 ~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       461 ALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             EEEEECCCCEEEEEECCCCCEEee
Confidence            899999999999999999876654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.75  E-value=11  Score=38.78  Aligned_cols=109  Identities=16%  Similarity=0.227  Sum_probs=80.1

Q ss_pred             CcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC
Q 008363          177 GTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG  256 (568)
Q Consensus       177 h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d  256 (568)
                      ..+.| .++.|+  +|...||+--.|.+|.+++......  ........+..+..|....|....       -+|-....
T Consensus        65 d~G~I-~SIkFS--lDnkilAVQR~~~~v~f~nf~~d~~--~l~~~~~ck~k~~~IlGF~W~~s~-------e~A~i~~~  132 (657)
T KOG2377|consen   65 DKGEI-KSIKFS--LDNKILAVQRTSKTVDFCNFIPDNS--QLEYTQECKTKNANILGFCWTSST-------EIAFITDQ  132 (657)
T ss_pred             CCCce-eEEEec--cCcceEEEEecCceEEEEecCCCch--hhHHHHHhccCcceeEEEEEecCe-------eEEEEecC
Confidence            34577 999999  8889999999999999999854421  012222334455668999998874       67777777


Q ss_pred             CEEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC
Q 008363          257 GLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD  297 (568)
Q Consensus       257 ~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~  297 (568)
                      |+-+|-.....+.++....|...|+=..|.|+-+.++.++.
T Consensus       133 G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  133 GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             CeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence            88888777666677777788888888889998876665543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=86.66  E-value=31  Score=33.20  Aligned_cols=201  Identities=11%  Similarity=0.058  Sum_probs=103.7

Q ss_pred             eEEEeeccCCc-eeeEEEEccCCCCcccccCcccEEEEEeCCC--cEEEEECCCCceeeEEeccCCccCCCCceEEEeec
Q 008363           91 RVVLCLAHNGK-VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNG--SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPV  167 (568)
Q Consensus        91 ~~~~~~~h~~~-~v~~v~~sp~~~~~~~~~~~~~~las~s~dg--~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~  167 (568)
                      .++....|+.. .+-.+.|..++          .++-+.+.-|  .|+.+|+.+++.+....-+.               
T Consensus        34 ~vv~~ypHd~~aFTQGL~~~~~g----------~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~---------------   88 (264)
T PF05096_consen   34 EVVETYPHDPTAFTQGLEFLDDG----------TLYESTGLYGQSSLRKVDLETGKVLQSVPLPP---------------   88 (264)
T ss_dssp             EEEEEEE--TT-EEEEEEEEETT----------EEEEEECSTTEEEEEEEETTTSSEEEEEE-TT---------------
T ss_pred             EEEEECCCCCcccCccEEecCCC----------EEEEeCCCCCcEEEEEEECCCCcEEEEEECCc---------------
Confidence            55556677653 44567787777          6777777766  79999999988775542211               


Q ss_pred             ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363          168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA  247 (568)
Q Consensus       168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~  247 (568)
                              ...   +-.++..   ++.+....-.++...+||..+-      +.+..+. ..+.=+.++....       
T Consensus        89 --------~~F---gEGit~~---~d~l~qLTWk~~~~f~yd~~tl------~~~~~~~-y~~EGWGLt~dg~-------  140 (264)
T PF05096_consen   89 --------RYF---GEGITIL---GDKLYQLTWKEGTGFVYDPNTL------KKIGTFP-YPGEGWGLTSDGK-------  140 (264)
T ss_dssp             --------T-----EEEEEEE---TTEEEEEESSSSEEEEEETTTT------EEEEEEE--SSS--EEEECSS-------
T ss_pred             --------ccc---ceeEEEE---CCEEEEEEecCCeEEEEccccc------eEEEEEe-cCCcceEEEcCCC-------
Confidence                    011   1223322   2345666667889999999855      6777663 2344566663322       


Q ss_pred             cEEEEEcCCCEEEEECCCCCcceeeeC--CCC---CCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccC
Q 008363          248 NVILTAGHGGLKFWDIRDPFRPLWDIH--PAP---KFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAG  322 (568)
Q Consensus       248 ~~las~s~d~v~lwD~~~~~~~~~~~~--~h~---~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~  322 (568)
                      .++.|-+.+.|+++|..+- .....+.  ...   ..++-|.|- +|...+=.-....|...|.        .+|+....
T Consensus       141 ~Li~SDGS~~L~~~dP~~f-~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp--------~tG~V~~~  210 (264)
T PF05096_consen  141 RLIMSDGSSRLYFLDPETF-KEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDP--------ETGKVVGW  210 (264)
T ss_dssp             CEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEET--------TT-BEEEE
T ss_pred             EEEEECCccceEEECCccc-ceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeC--------CCCeEEEE
Confidence            6777777777999998765 3333332  111   234566665 3432222222344555555        23443210


Q ss_pred             ccccceEE-------EecCCCCEEEEEEecCCCEEEEEe
Q 008363          323 TKQQGLHL-------VNCSSFAIWSVQVSRLTGMVAYCS  354 (568)
Q Consensus       323 ~~~~~l~~-------~~~h~~~V~~l~~sp~~~~l~s~s  354 (568)
                      .....+..       ........+.++|.|.+..|...|
T Consensus       211 iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  211 IDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            00000000       001135688999999865444443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=86.63  E-value=51  Score=35.63  Aligned_cols=199  Identities=11%  Similarity=0.098  Sum_probs=103.1

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD  202 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D  202 (568)
                      ..|.+++.++.|.-.|..+|+.+-.+.....      .  ...+.. +    ..   .+...++..    +..++.++.|
T Consensus        70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~------~--~~~~~~-~----~~---~~~rg~av~----~~~v~v~t~d  129 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLP------D--DVIPVM-C----CD---VVNRGVALY----DGKVFFGTLD  129 (527)
T ss_pred             CEEEEECCCCcEEEEECCCCceeeEecCCCC------c--cccccc-c----cc---cccccceEE----CCEEEEEcCC
Confidence            4777788888999999999887655421100      0  000000 0    00   000122322    3477788889


Q ss_pred             CeEEEEEccCCCCCCCCceeEEeeC--CCC--CeeEEEEccCCCCCCCCcEEEEEc-----CCC-EEEEECCCCCcceee
Q 008363          203 GTVALWKFVASDSSIDSRPLLCFSA--DTL--PIRAVSWAPAESDSDSANVILTAG-----HGG-LKFWDIRDPFRPLWD  272 (568)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~~~--h~~--~V~~v~~~p~~~~~~~~~~las~s-----~d~-v~lwD~~~~~~~~~~  272 (568)
                      +.|.-.|..++      +.+-.+..  +..  .+.+--.--++      .+++..+     .++ |.-+|..++ +.++.
T Consensus       130 g~l~ALDa~TG------k~~W~~~~~~~~~~~~~tssP~v~~g------~Vivg~~~~~~~~~G~v~AlD~~TG-~~lW~  196 (527)
T TIGR03075       130 ARLVALDAKTG------KVVWSKKNGDYKAGYTITAAPLVVKG------KVITGISGGEFGVRGYVTAYDAKTG-KLVWR  196 (527)
T ss_pred             CEEEEEECCCC------CEEeecccccccccccccCCcEEECC------EEEEeecccccCCCcEEEEEECCCC-ceeEe
Confidence            99999998877      44433321  110  11110001122      3444322     246 888888887 55544


Q ss_pred             eCCC-------------------------------CCCe-EEEEEcCCCCEEEEEeCC-----C-----------cEEEE
Q 008363          273 IHPA-------------------------------PKFI-YGLDWLPDPGCVILSFDD-----G-----------AMRIV  304 (568)
Q Consensus       273 ~~~h-------------------------------~~~i-~~l~~sp~~~~l~s~~~d-----g-----------~I~lw  304 (568)
                      +..-                               ...+ ..+++.|...+|+.+...     +           .|.-.
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAl  276 (527)
T TIGR03075       197 RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVAR  276 (527)
T ss_pred             ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEE
Confidence            3211                               1112 245677766777766532     2           33344


Q ss_pred             EccccccCCCCCCCCccCccccceEEEecCCCCE---------EEEEEecCCC---EEEEEeCCCeEEEEEcCCCeee
Q 008363          305 SLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAI---------WSVQVSRLTG---MVAYCSADGTVHRFQLTAKAVE  370 (568)
Q Consensus       305 d~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V---------~~l~~sp~~~---~l~s~s~Dg~v~iwd~~~~~~~  370 (568)
                      |+        .+|+..+        .++....-+         .-+.+..+|+   .|+.++.+|.+++.|-.+++..
T Consensus       277 d~--------~TG~~~W--------~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       277 DP--------DTGKIKW--------HYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             cc--------ccCCEEE--------eeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            44        3566543        222211111         1122324554   7889999999999999998764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.27  E-value=9.7  Score=39.74  Aligned_cols=72  Identities=19%  Similarity=0.324  Sum_probs=46.6

Q ss_pred             CeeEEEEccCCCCCCCCcEEEEEcCCCEEEEEC----------CCCCcce---ee-------eCCC-CCCeEEEEEcCCC
Q 008363          231 PIRAVSWAPAESDSDSANVILTAGHGGLKFWDI----------RDPFRPL---WD-------IHPA-PKFIYGLDWLPDP  289 (568)
Q Consensus       231 ~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~----------~~~~~~~---~~-------~~~h-~~~i~~l~~sp~~  289 (568)
                      .|..|..++.|      ..++-.|.+||.+-.+          .++ +++   ++       +... .-.+..++|+|+.
T Consensus       105 eV~~vl~s~~G------S~VaL~G~~Gi~vMeLp~rwG~~s~~eDg-k~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S  177 (741)
T KOG4460|consen  105 EVYQVLLSPTG------SHVALIGIKGLMVMELPKRWGKNSEFEDG-KSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSS  177 (741)
T ss_pred             EEEEEEecCCC------ceEEEecCCeeEEEEchhhcCccceecCC-CceEEEEeecccceeeccCCceeeeeccccCCc
Confidence            47778889999      6777778888555444          111 111   11       1111 1124578899975


Q ss_pred             ---CEEEEEeCCCcEEEEEcccc
Q 008363          290 ---GCVILSFDDGAMRIVSLLKA  309 (568)
Q Consensus       290 ---~~l~s~~~dg~I~lwd~~~~  309 (568)
                         ..|+.-+.|++||+||+...
T Consensus       178 ~~D~hL~iL~sdnviRiy~lS~~  200 (741)
T KOG4460|consen  178 ILDPHLVLLTSDNVIRIYSLSEP  200 (741)
T ss_pred             cCCceEEEEecCcEEEEEecCCc
Confidence               67888889999999999654

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=86.08  E-value=18  Score=33.59  Aligned_cols=120  Identities=11%  Similarity=0.127  Sum_probs=68.0

Q ss_pred             cEEEEEcCCCEEEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEeC---CC---cEEEE-Ecccccc-CCCCC--
Q 008363          248 NVILTAGHGGLKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSFD---DG---AMRIV-SLLKAAY-DVPAT--  316 (568)
Q Consensus       248 ~~las~s~d~v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~---dg---~I~lw-d~~~~~~-~~~~~--  316 (568)
                      .+|++++...|.+|++.... ..+..|.. -+.|..+.++..|.||++-=.   ..   .+|+| +.+.... ..|..  
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR  108 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR  108 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence            45555444449999998433 44556654 377899999999999999632   22   56765 3322211 11111  


Q ss_pred             --CCCccCcc----ccceEEEe-cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363          317 --GKPFAGTK----QQGLHLVN-CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV  369 (568)
Q Consensus       317 --g~~~~~~~----~~~l~~~~-~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~  369 (568)
                        |..+....    ...+..+. .-..++.+++..|...-|+.|+ ++.+.+|.+.....
T Consensus       109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~  167 (215)
T PF14761_consen  109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTI  167 (215)
T ss_pred             EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEE
Confidence              21111000    01122111 1244678888888866666666 56899999865443

>PRK13684 Ycf48-like protein; Provisional

Probab=85.92  E-value=39  Score=34.10  Aligned_cols=153  Identities=13%  Similarity=0.134  Sum_probs=77.2

Q ss_pred             cCccceEEEEccCCCCCEEEEEeCCCeEEE-EEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC
Q 008363          178 TQSIPLTMEWSTSPPHDYLLAGCHDGTVAL-WKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG  256 (568)
Q Consensus       178 ~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~i-wd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d  256 (568)
                      ...+ +.+.+.  +++.++++ +..|.+.. ++-...      .-......-...++++.+.+++      .+++.+ .+
T Consensus       172 ~g~~-~~i~~~--~~g~~v~~-g~~G~i~~s~~~gg~------tW~~~~~~~~~~l~~i~~~~~g------~~~~vg-~~  234 (334)
T PRK13684        172 AGVV-RNLRRS--PDGKYVAV-SSRGNFYSTWEPGQT------AWTPHQRNSSRRLQSMGFQPDG------NLWMLA-RG  234 (334)
T ss_pred             cceE-EEEEEC--CCCeEEEE-eCCceEEEEcCCCCC------eEEEeeCCCcccceeeeEcCCC------CEEEEe-cC
Confidence            3455 778877  66655544 44665543 121111      1111122334568999999988      666655 44


Q ss_pred             C-EEEEECCCCCcceeeeC----CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363          257 G-LKFWDIRDPFRPLWDIH----PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV  331 (568)
Q Consensus       257 ~-v~lwD~~~~~~~~~~~~----~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~  331 (568)
                      + +++=....+ ..-....    .....+..+.+.|++.. ++++.+|.|.. ...        .|+..     +.+...
T Consensus       235 G~~~~~s~d~G-~sW~~~~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~~-S~d--------~G~tW-----~~~~~~  298 (334)
T PRK13684        235 GQIRFNDPDDL-ESWSKPIIPEITNGYGYLDLAYRTPGEI-WAGGGNGTLLV-SKD--------GGKTW-----EKDPVG  298 (334)
T ss_pred             CEEEEccCCCC-CccccccCCccccccceeeEEEcCCCCE-EEEcCCCeEEE-eCC--------CCCCC-----eECCcC
Confidence            5 433222222 1111111    11234788999998774 45556776643 221        23322     111110


Q ss_pred             ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          332 NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       332 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                      ..-....+.+.|..++..++ .+..|.|..|+-
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~  330 (334)
T PRK13684        299 EEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG  330 (334)
T ss_pred             CCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence            11223577777776665544 556888877754

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.23  E-value=65  Score=35.52  Aligned_cols=75  Identities=15%  Similarity=0.245  Sum_probs=44.0

Q ss_pred             CCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCC--CCCccee--eee----cccCCCCceEEcccCCCCCccc
Q 008363          335 SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHS--RNRPMHF--LCG----SVTEDESAITVNTPLDNTPVPL  406 (568)
Q Consensus       335 ~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~--~~~~~~~--~~~----s~~~~~~~i~~~~~~~~~~~~~  406 (568)
                      .+.+..+.+||+.++|+.-..+|.|.+-..+..+.--+..  ..-.|.-  =|+    .++-+.....++.+-..+++.+
T Consensus       216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~WcgndaVvl~~e~~l~lvgp~gd~V~f~y  295 (829)
T KOG2280|consen  216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGNDAVVLSWEVNLMLVGPPGDSVQFYY  295 (829)
T ss_pred             CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCCceEEEEeeeEEEEcCCCCcccccc
Confidence            4567788999999999999999999888776543322211  1111111  122    2333444444566666666665


Q ss_pred             ccc
Q 008363          407 KKT  409 (568)
Q Consensus       407 k~~  409 (568)
                      .-.
T Consensus       296 d~t  298 (829)
T KOG2280|consen  296 DET  298 (829)
T ss_pred             CCC
Confidence            544

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=85.17  E-value=7.7  Score=34.94  Aligned_cols=35  Identities=11%  Similarity=0.380  Sum_probs=29.1

Q ss_pred             CeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCC
Q 008363          231 PIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRD  265 (568)
Q Consensus       231 ~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~  265 (568)
                      .|..++|+|.|.+....-+||....++ |.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            688999999886666678899999998 99997664

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=85.16  E-value=14  Score=38.50  Aligned_cols=144  Identities=10%  Similarity=0.049  Sum_probs=88.8

Q ss_pred             EEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCC--CCcEEEEEcCCCEEEEECCCCCcceeee
Q 008363          196 LLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSD--SANVILTAGHGGLKFWDIRDPFRPLWDI  273 (568)
Q Consensus       196 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~--~~~~las~s~d~v~lwD~~~~~~~~~~~  273 (568)
                      +..|..-..+.-.|+..+      +.+..+..|..-  -|.|.|.....+  ....|+..|..+|.-.|.|.....+...
T Consensus       483 ~~dg~~~~kLykmDIErG------kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~  554 (776)
T COG5167         483 YLDGGERDKLYKMDIERG------KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV  554 (776)
T ss_pred             EecCCCcccceeeecccc------eeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence            344555566777777766      777788777664  567777641110  2245666666667767877554333222


Q ss_pred             CCCCCCeEEEEEc----CCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCE
Q 008363          274 HPAPKFIYGLDWL----PDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGM  349 (568)
Q Consensus       274 ~~h~~~i~~l~~s----p~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~  349 (568)
                       .....++.-.|+    ....+|++++..|.|++||.-         |..-       -..+.+-...|..+..+.+|.+
T Consensus       555 -esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRi---------g~rA-------KtalP~lG~aIk~idvta~Gk~  617 (776)
T COG5167         555 -ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRI---------GKRA-------KTALPGLGDAIKHIDVTANGKH  617 (776)
T ss_pred             -eehhccccccccccccccCceEEEecCCCceeeehhh---------cchh-------hhcCcccccceeeeEeecCCcE
Confidence             112223333333    245689999999999999972         2211       1245666778999999999987


Q ss_pred             EEEEeCCCeEEEEEcC
Q 008363          350 VAYCSADGTVHRFQLT  365 (568)
Q Consensus       350 l~s~s~Dg~v~iwd~~  365 (568)
                      |++.+ ...+.+-|+.
T Consensus       618 ilaTC-k~yllL~d~~  632 (776)
T COG5167         618 ILATC-KNYLLLTDVP  632 (776)
T ss_pred             EEEee-cceEEEEecc
Confidence            76666 4577777774

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=85.07  E-value=41  Score=33.05  Aligned_cols=214  Identities=14%  Similarity=0.209  Sum_probs=109.5

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC------Ccee-eEEeccCCccCCCCceEEEeecceeccccc
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL------LRTM-KAIYLSSMKEGTDPRFVKLEPVFRCSMLKC  175 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~------~~~~-~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~  175 (568)
                      -|.|+++|.+          .+-++....+...+||...      .+.+ -.+....                      .
T Consensus        25 ~WGia~~p~~----------~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~----------------------~   72 (336)
T TIGR03118        25 AWGLSYRPGG----------PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPP----------------------P   72 (336)
T ss_pred             cceeEecCCC----------CEEEecCCcceEEeecCCcccccCCccceEEEecCCC----------------------C
Confidence            4789999998          4677777789999999872      1111 1111000                      0


Q ss_pred             CCcCccceEEEEccC------CC----CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee-CCCCCe-eEEEEccCCCC
Q 008363          176 GGTQSIPLTMEWSTS------PP----HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS-ADTLPI-RAVSWAPAESD  243 (568)
Q Consensus       176 ~h~~~V~~~v~~s~~------~~----g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V-~~v~~~p~~~~  243 (568)
                      .+....|+.+.|+..      ..    ...++.++.||+|.-|...-..... ......+. .-.+.| ..+++...+  
T Consensus        73 ~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~-~~~~~~~d~s~~gavYkGLAi~~~~--  149 (336)
T TIGR03118        73 LAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRM-TRAEIVVDASQQGNVYKGLAVGPTG--  149 (336)
T ss_pred             CCCCCCccEEEEeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccc-cccEEEEccCCCcceeeeeEEeecC--
Confidence            011111355555521      11    1246888999999999954321100 01112222 112333 345555442  


Q ss_pred             CCCCcEEEEEc-CCC-EEEEECCCCCcce-eeeCCC--------------CC--CeEEEEEcCCCCEEEEEeCCCcEEEE
Q 008363          244 SDSANVILTAG-HGG-LKFWDIRDPFRPL-WDIHPA--------------PK--FIYGLDWLPDPGCVILSFDDGAMRIV  304 (568)
Q Consensus       244 ~~~~~~las~s-~d~-v~lwD~~~~~~~~-~~~~~h--------------~~--~i~~l~~sp~~~~l~s~~~dg~I~lw  304 (568)
                        ...+|..+. ..+ |.++|-.-....+ ..+..-              .+  .|+-..-.++.+.=+.|..-|.|-+|
T Consensus       150 --~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvF  227 (336)
T TIGR03118       150 --GGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVF  227 (336)
T ss_pred             --CCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEE
Confidence              114554443 345 9998865321111 001000              00  01111112233333334445789999


Q ss_pred             EccccccCCCCCCCCccCccccceEEEe--cCCCCEEEEEEecC------CCEEEEEeCCCeEEEEEcCCCeee
Q 008363          305 SLLKAAYDVPATGKPFAGTKQQGLHLVN--CSSFAIWSVQVSRL------TGMVAYCSADGTVHRFQLTAKAVE  370 (568)
Q Consensus       305 d~~~~~~~~~~~g~~~~~~~~~~l~~~~--~h~~~V~~l~~sp~------~~~l~s~s~Dg~v~iwd~~~~~~~  370 (568)
                      |+         .|+++        +.+.  +.-..-|.|+..|-      +.+|+--=.||+|..||..++...
T Consensus       228 d~---------~G~l~--------~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~  284 (336)
T TIGR03118       228 TL---------NGQLL--------RRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL  284 (336)
T ss_pred             cC---------CCcEE--------EEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence            98         46654        3332  23345588888664      466776668999999999876644

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PHA03098 kelch-like protein; Provisional

Probab=84.18  E-value=19  Score=38.95  Aligned_cols=102  Identities=7%  Similarity=-0.015  Sum_probs=49.1

Q ss_pred             CCCEEEEEeCCC------eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-----C-EE
Q 008363          192 PHDYLLAGCHDG------TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-----G-LK  259 (568)
Q Consensus       192 ~g~~l~sgs~Dg------~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-----~-v~  259 (568)
                      ++.+++.|+.++      .+..||..+..+    ..+..+.........+.+  ++      .+++.||.+     . +.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W----~~~~~~~~~R~~~~~~~~--~~------~lyv~GG~~~~~~~~~v~  361 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSW----NKVPELIYPRKNPGVTVF--NN------RIYVIGGIYNSISLNTVE  361 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCee----eECCCCCcccccceEEEE--CC------EEEEEeCCCCCEecceEE
Confidence            456777777643      467788776643    111111111111222222  34      677777754     2 77


Q ss_pred             EEECCCCCcc-eeeeCCCCCCeEEEEEcCCCCEEEEEeCC------CcEEEEEcc
Q 008363          260 FWDIRDPFRP-LWDIHPAPKFIYGLDWLPDPGCVILSFDD------GAMRIVSLL  307 (568)
Q Consensus       260 lwD~~~~~~~-~~~~~~h~~~i~~l~~sp~~~~l~s~~~d------g~I~lwd~~  307 (568)
                      .||..+.... ...+. +...-.+++. -++...+.||.+      ..+..||+.
T Consensus       362 ~yd~~~~~W~~~~~lp-~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~  414 (534)
T PHA03098        362 SWKPGESKWREEPPLI-FPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLN  414 (534)
T ss_pred             EEcCCCCceeeCCCcC-cCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCC
Confidence            7887765311 11111 1111112222 246666667632      357888874

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=83.97  E-value=8.5  Score=36.20  Aligned_cols=79  Identities=14%  Similarity=0.029  Sum_probs=51.2

Q ss_pred             EcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe-----cCCCCEEEEEEecCCCEEEEEeCCCeE
Q 008363          285 WLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN-----CSSFAIWSVQVSRLTGMVAYCSADGTV  359 (568)
Q Consensus       285 ~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~-----~h~~~V~~l~~sp~~~~l~s~s~Dg~v  359 (568)
                      +..++.+|++-+.+|.+++||+.+...-.+  ..     ...++-...     .....|..+.++.+|.-|++-+ +|..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~--~~-----Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~   89 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLP--PV-----SIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDS   89 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccC--Cc-----cHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCE
Confidence            445688999999999999999965331110  00     011111100     3556788999998887777766 5788


Q ss_pred             EEEEcCCCeeec
Q 008363          360 HRFQLTAKAVEK  371 (568)
Q Consensus       360 ~iwd~~~~~~~~  371 (568)
                      +.|+..-+.+.+
T Consensus        90 y~y~~~L~~W~~  101 (219)
T PF07569_consen   90 YSYSPDLGCWIR  101 (219)
T ss_pred             EEeccccceeEE
Confidence            999986555443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.81  E-value=15  Score=38.39  Aligned_cols=89  Identities=12%  Similarity=0.114  Sum_probs=54.6

Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCC-CCCCCCccCccccceE--EEec-CCCCEEEEEEecCC---CEEE
Q 008363          279 FIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDV-PATGKPFAGTKQQGLH--LVNC-SSFAIWSVQVSRLT---GMVA  351 (568)
Q Consensus       279 ~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~-~~~g~~~~~~~~~~l~--~~~~-h~~~V~~l~~sp~~---~~l~  351 (568)
                      .|..+..++.|..++..|.+|.+.++=.+.+..+. ...|++...-...++.  .|.. ..-.+..++|+|+.   ..|+
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            46778889999999999999987665433332111 1234332100000000  1111 11245678999985   7888


Q ss_pred             EEeCCCeEEEEEcCCC
Q 008363          352 YCSADGTVHRFQLTAK  367 (568)
Q Consensus       352 s~s~Dg~v~iwd~~~~  367 (568)
                      .-+.|..|++|++...
T Consensus       185 iL~sdnviRiy~lS~~  200 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEP  200 (741)
T ss_pred             EEecCcEEEEEecCCc
Confidence            8899999999999754

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.34  E-value=47  Score=32.39  Aligned_cols=165  Identities=8%  Similarity=0.169  Sum_probs=98.6

Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC-CCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA-DTLPIRAVSWAPAESDSDSANVILTA  253 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~~~~~~las~  253 (568)
                      .|-...+ .++.|+  |+.+.|++......-.||=...+      ..++++.- .-...-.|.+...+      .+.++-
T Consensus        82 ~g~~~nv-S~LTyn--p~~rtLFav~n~p~~iVElt~~G------dlirtiPL~g~~DpE~Ieyig~n------~fvi~d  146 (316)
T COG3204          82 LGETANV-SSLTYN--PDTRTLFAVTNKPAAIVELTKEG------DLIRTIPLTGFSDPETIEYIGGN------QFVIVD  146 (316)
T ss_pred             ccccccc-cceeeC--CCcceEEEecCCCceEEEEecCC------ceEEEecccccCChhHeEEecCC------EEEEEe
Confidence            4555667 999999  77777777666666555544434      55554421 12224567777776      555555


Q ss_pred             cCCC-EEEEECCCCCcce------eeeC--CC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCc
Q 008363          254 GHGG-LKFWDIRDPFRPL------WDIH--PA-PKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGT  323 (568)
Q Consensus       254 s~d~-v~lwD~~~~~~~~------~~~~--~h-~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~  323 (568)
                      -.+. +.++.+......+      ..+.  .+ ......++|.|..+.|+.+=+-.-+.||.+.....       .+   
T Consensus       147 ER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~-------~l---  216 (316)
T COG3204         147 ERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPS-------SL---  216 (316)
T ss_pred             hhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCc-------cc---
Confidence            5566 7777665442111      1111  22 45567999999999999998888888887742110       00   


Q ss_pred             cccceEEEecCC-------CCEEEEEEecC-CCEEEEEeCCCeEEEEEcCCC
Q 008363          324 KQQGLHLVNCSS-------FAIWSVQVSRL-TGMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       324 ~~~~l~~~~~h~-------~~V~~l~~sp~-~~~l~s~s~Dg~v~iwd~~~~  367 (568)
                         .++....++       ..|.++.|++. +.+|+.+..++.|.-.|+...
T Consensus       217 ---~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         217 ---SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             ---ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence               001111111       34677888876 566777777777777777543

>PHA02790 Kelch-like protein; Provisional

Probab=82.80  E-value=42  Score=35.84  Aligned_cols=172  Identities=5%  Similarity=-0.090  Sum_probs=80.7

Q ss_pred             CCCEEEEEeCCC-----eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC--C-EEEEEC
Q 008363          192 PHDYLLAGCHDG-----TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG--G-LKFWDI  263 (568)
Q Consensus       192 ~g~~l~sgs~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d--~-v~lwD~  263 (568)
                      ++.++++|+.++     ++..||..+..+    ..+..+....... +++ .-++      .+++.||.+  . +..||.
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W----~~~~~m~~~r~~~-~~v-~~~~------~iYviGG~~~~~sve~ydp  338 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNW----IPIPPMNSPRLYA-SGV-PANN------KLYVVGGLPNPTSVERWFH  338 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEE----EECCCCCchhhcc-eEE-EECC------EEEEECCcCCCCceEEEEC
Confidence            345677787653     466778775532    1211121111111 222 2344      677777763  3 888987


Q ss_pred             CCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEE
Q 008363          264 RDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDG---AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIW  339 (568)
Q Consensus       264 ~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg---~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~  339 (568)
                      .+.. ..+..+.........+.  -+|+..+.||.++   .+..||.+.        .+.      ..+..+........
T Consensus       339 ~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~--------~~W------~~~~~m~~~r~~~~  402 (480)
T PHA02790        339 GDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNH--------DQW------QFGPSTYYPHYKSC  402 (480)
T ss_pred             CCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCC--------CEE------EeCCCCCCccccce
Confidence            6542 11222211111112222  2477777777543   466787743        111      00000110111111


Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363          340 SVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNT  397 (568)
Q Consensus       340 ~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~  397 (568)
                      .+  .-++.+.+.|   |.+.+||..+..+..... -+.+...++....++....+|.
T Consensus       403 ~~--~~~~~IYv~G---G~~e~ydp~~~~W~~~~~-m~~~r~~~~~~v~~~~IYviGG  454 (480)
T PHA02790        403 AL--VFGRRLFLVG---RNAEFYCESSNTWTLIDD-PIYPRDNPELIIVDNKLLLIGG  454 (480)
T ss_pred             EE--EECCEEEEEC---CceEEecCCCCcEeEcCC-CCCCccccEEEEECCEEEEECC
Confidence            12  2245555555   357789998887775432 2344445555555665555554

>PRK13684 Ycf48-like protein; Provisional

Probab=82.76  E-value=57  Score=32.92  Aligned_cols=112  Identities=8%  Similarity=0.062  Sum_probs=58.1

Q ss_pred             CccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe-eCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC
Q 008363          179 QSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF-SADTLPIRAVSWAPAESDSDSANVILTAGHGG  257 (568)
Q Consensus       179 ~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~  257 (568)
                      ..+ +++.+.  +++..+++| ..|.+.+=....+..   ...+..- ..-...+.++.|.+.+      .+++.+ .++
T Consensus       215 ~~l-~~i~~~--~~g~~~~vg-~~G~~~~~s~d~G~s---W~~~~~~~~~~~~~l~~v~~~~~~------~~~~~G-~~G  280 (334)
T PRK13684        215 RRL-QSMGFQ--PDGNLWMLA-RGGQIRFNDPDDLES---WSKPIIPEITNGYGYLDLAYRTPG------EIWAGG-GNG  280 (334)
T ss_pred             ccc-eeeeEc--CCCCEEEEe-cCCEEEEccCCCCCc---cccccCCccccccceeeEEEcCCC------CEEEEc-CCC
Confidence            445 788877  677666665 467765322232211   0111100 0112347889999887      566555 455


Q ss_pred             EEEEECCCCCcceeee---CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 008363          258 LKFWDIRDPFRPLWDI---HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSL  306 (568)
Q Consensus       258 v~lwD~~~~~~~~~~~---~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~  306 (568)
                      ..+.-...+ ..-...   ..-....+.+.|..+++. ++.+..|.|--|+-
T Consensus       281 ~v~~S~d~G-~tW~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~G~il~~~~  330 (334)
T PRK13684        281 TLLVSKDGG-KTWEKDPVGEEVPSNFYKIVFLDPEKG-FVLGQRGVLLRYVG  330 (334)
T ss_pred             eEEEeCCCC-CCCeECCcCCCCCcceEEEEEeCCCce-EEECCCceEEEecC
Confidence            333333332 222111   122345778888866665 45566788876653

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=82.34  E-value=6.3  Score=37.07  Aligned_cols=24  Identities=25%  Similarity=0.433  Sum_probs=20.7

Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCC
Q 008363          191 PPHDYLLAGCHDGTVALWKFVASD  214 (568)
Q Consensus       191 ~~g~~l~sgs~Dg~I~iwd~~~~~  214 (568)
                      ..+.+|++-+.+|.+++||+...+
T Consensus        20 ~~~~~Ll~iT~~G~l~vWnl~~~k   43 (219)
T PF07569_consen   20 CNGSYLLAITSSGLLYVWNLKKGK   43 (219)
T ss_pred             eCCCEEEEEeCCCeEEEEECCCCe
Confidence            357799999999999999998764

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=81.73  E-value=34  Score=32.12  Aligned_cols=101  Identities=13%  Similarity=0.140  Sum_probs=64.5

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCCCcEEEEE--CCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWE--VPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd--~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      .++|+-+..         .+..+-+.+-+|.-||  .++|.....           ...+.+.....     .++..+-+
T Consensus       162 gl~Wd~d~K---------~fY~iDsln~~V~a~dyd~~tG~~snr-----------~~i~dlrk~~~-----~e~~~PDG  216 (310)
T KOG4499|consen  162 GLAWDSDAK---------KFYYIDSLNYEVDAYDYDCPTGDLSNR-----------KVIFDLRKSQP-----FESLEPDG  216 (310)
T ss_pred             cccccccCc---------EEEEEccCceEEeeeecCCCcccccCc-----------ceeEEeccCCC-----cCCCCCCc
Confidence            466665542         4566667778887787  556543311           11111111100     12222223


Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA  240 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~  240 (568)
                      .+++    .+|.+.++...-|+|.-.|..++      +.+..+.--+..|++++|--.
T Consensus       217 m~ID----~eG~L~Va~~ng~~V~~~dp~tG------K~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  217 MTID----TEGNLYVATFNGGTVQKVDPTTG------KILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             ceEc----cCCcEEEEEecCcEEEEECCCCC------cEEEEEEcCCCceEEEEecCC
Confidence            5665    57888999999999999999987      888888777899999999765

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=80.97  E-value=61  Score=32.11  Aligned_cols=115  Identities=14%  Similarity=0.246  Sum_probs=60.0

Q ss_pred             eCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 008363          226 SADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRI  303 (568)
Q Consensus       226 ~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~l  303 (568)
                      ..-.+.+..+.-++++      .+++.++.+. +.-||--... .+...  .-...|..|.|.|++...++ ...|.|++
T Consensus       141 ~~~~gs~~~~~r~~dG------~~vavs~~G~~~~s~~~G~~~w~~~~r--~~~~riq~~gf~~~~~lw~~-~~Gg~~~~  211 (302)
T PF14870_consen  141 SETSGSINDITRSSDG------RYVAVSSRGNFYSSWDPGQTTWQPHNR--NSSRRIQSMGFSPDGNLWML-ARGGQIQF  211 (302)
T ss_dssp             -S----EEEEEE-TTS-------EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEEE-ETTTEEEE
T ss_pred             cCCcceeEeEEECCCC------cEEEEECcccEEEEecCCCccceEEcc--CccceehhceecCCCCEEEE-eCCcEEEE
Confidence            3445778999999998      8898888888 7788866432 23222  23577999999999876554 48888888


Q ss_pred             EEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEE
Q 008363          304 VSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHR  361 (568)
Q Consensus       304 wd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~i  361 (568)
                      =+...       .++...    +.+..+......+..++|.+++...++|+ .|.+.+
T Consensus       212 s~~~~-------~~~~w~----~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~  257 (302)
T PF14870_consen  212 SDDPD-------DGETWS----EPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLLV  257 (302)
T ss_dssp             EE-TT-------EEEEE-------B-TTSS--S-EEEEEESSSS-EEEEES-TT-EEE
T ss_pred             ccCCC-------Cccccc----cccCCcccCceeeEEEEecCCCCEEEEeC-CccEEE
Confidence            76211       010000    00001111223578999998877666555 555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	568
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		2e-04

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 19/181 (10%)
Query: 173 LKCGGTQSIPLTMEWSTSPPHDYLLA-GCHDGTVALWKFVASDSSIDSR-PLLCFSADTL 230
           L CG T  + L + W   P +D ++A G  D TV +W+       +  R P++     T 
Sbjct: 76  LVCGHTAPV-LDIAWC--PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132
Query: 231 PIRAVSWAPAESDSDSANVILTAG-HGGLKFWDIRDPFRPLW---DIHPAPKFIYGLDWL 286
            +  V+W P      + NV+L+AG    +  WD+      L    D+HP    IY +DW 
Sbjct: 133 RVGIVAWHPT-----AQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP--DTIYSVDWS 185
Query: 287 PDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL 346
            D   +  S  D  +R++   K    V    +P  GT+   +H V  S   I +   SR+
Sbjct: 186 RDGALICTSCRDKRVRVIEPRKGTV-VAEKDRPHEGTRP--VHAVFVSEGKILTTGFSRM 242
Query: 347 T 347
           +
Sbjct: 243 S 243

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	568
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	2e-25
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	5e-06
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	1e-06
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	5e-06
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	4e-06
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	8e-05
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	8e-05
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	1e-04
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	2e-04
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	3e-04
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	3e-04
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	3e-04
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	9e-04
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	4e-04
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	6e-04
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	6e-04

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score =  108 bits (271), Expect = 2e-25
 Identities = 47/297 (15%), Positives = 88/297 (29%), Gaps = 51/297 (17%)

Query: 90  PRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIY 149
              V  + H+    WD+KW       C     +G L+ +   G++   E+    T   ++
Sbjct: 197 CVKVQTIVHSFGEVWDLKWHE----GCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF 252

Query: 150 LSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSP-PHDYLLAGCHDGTVALW 208
               K                       T S+  ++  +        ++ G  +G VA +
Sbjct: 253 KMCEK--------------------PSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEF 292

Query: 209 KFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPF 267
                D +    P          I +VS A          V+ T    G    ++ +D  
Sbjct: 293 -----DLTDPEVPSFYDQVHDSYILSVSTAY---SDFEDTVVSTVAVDGYFYIFNPKDIA 344

Query: 268 RPLWDIHPAPK-FIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQ 326
                +       +  + + P     I S    ++R V                      
Sbjct: 345 TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPS----------------RAAF 388

Query: 327 GLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLC 383
            +H +      I ++ VSRL  MV   SADG++       + +    + +     L 
Sbjct: 389 AVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLR 445

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524

 Score = 48.3 bits (114), Expect = 5e-06
 Identities = 46/407 (11%), Positives = 109/407 (26%), Gaps = 54/407 (13%)

Query: 159 PRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSID 218
                 +       L    +Q     M+   +   +      H   + ++K   + S++ 
Sbjct: 143 NIEENTDIGKDIQYLAVAVSQY----MDEPLNEHLEMFDKEKHSSCIQIFKM--NTSTLH 196

Query: 219 SRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA-GHGGLKFWDIRDPF---------- 267
              +         +  + W            +      G + F +I D            
Sbjct: 197 CVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCE 256

Query: 268 RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQG 327
           +P   +  A   I   D+L  P  V+  F +G +         +D+     P        
Sbjct: 257 KPSLTLSLADSLITTFDFL-SPTTVVCGFKNGFVAE-------FDLTDPEVP-------- 300

Query: 328 LHLVNCSSFAIWSVQVSRLTG---MVAYCSADGTVHRFQL-TAKAVEKDHSRNRPMHFLC 383
                     I SV  +       +V+  + DG  + F        +   SR R  + + 
Sbjct: 301 SFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVP 360

Query: 384 GSVTEDESAITVNTPLDNTPVPLKKTVHDAGERSMRSFLIESNSSKSPNDKKGKNVLSSD 443
                   +   +    +      + V      ++   +    +  +        +  S 
Sbjct: 361 VVYCPQIYSYIYSDGASSL-----RAVPSRAAFAVHPLVSRETTITA--------IGVSR 407

Query: 444 NQPLALCYGNEPGEESEGDMTLAALKNKQKPKSRSSSKKKEEDDQAMVCIDEEATDIQGK 503
             P+ L  G+  G     +     L   +   +   S +  + D      D++       
Sbjct: 408 LHPMVLA-GSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWD--YSIKDDKYRIDSSY 464

Query: 504 ENEKGEAGNGIEV-LPPKVVAMHRVRWNMNKGSERWLCYGGAGGIIR 549
           E       +  +  +    + +   +WN      +   +  + G++ 
Sbjct: 465 EVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLT 511

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 32/192 (16%), Positives = 64/192 (33%), Gaps = 24/192 (12%)

Query: 190 SPPHDYLLAGC-HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSAN 248
              H+ L      D  + +W    +++S   +P     A T  +  +S+ P      S  
Sbjct: 240 HLLHESLFGSVADDQKLMIWDTRNNNTS---KPSHTVDAHTAEVNCLSFNP-----YSEF 291

Query: 249 VILTAGH-GGLKFWDIRDPFRPLWDI--HPAPKFIYGLDWLPDPGCVILS-FDDGAMRI- 303
           ++ T      +  WD+R+    L     H     I+ + W P    ++ S   D  + + 
Sbjct: 292 ILATGSADKTVALWDLRNLKLKLHSFESHKDE--IFQVQWSPHNETILASSGTDRRLHVW 349

Query: 304 ---VSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVH 360
                  + + +    G P       G H    S F+ W+        ++   S D  + 
Sbjct: 350 DLSKIGEEQSTEDAEDGPPELLFIHGG-HTAKISDFS-WNPNEP---WIICSVSEDNIMQ 404

Query: 361 RFQLTAKAVEKD 372
            +Q+       +
Sbjct: 405 VWQMAENVYNDE 416

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 31/181 (17%), Positives = 58/181 (32%), Gaps = 27/181 (14%)

Query: 185 MEWSTSPPHDYLLAGCHDGTVALWKFVA-SDSSIDSRPLLCFSADTLPIRAVSWAPAESD 243
           + W+ +    YLL+   D T+ LW   A             F+  T  +  V+W      
Sbjct: 187 LSWNPNLNG-YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHL---- 241

Query: 244 SDSANVILTAGHGG-LKFWDIRDP--FRPLWDIHPAPKFIYGLDWLPDPGCVILS-FDDG 299
               ++  +      L  WD R+    +P   +      +  L + P    ++ +   D 
Sbjct: 242 -LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 300

Query: 300 AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL-TGMVAYCSADGT 358
            + +       +D+    K         LH        I+ VQ S     ++A    D  
Sbjct: 301 TVAL-------WDL-RNLK-------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 345

Query: 359 V 359
           +
Sbjct: 346 L 346

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 377

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 26/171 (15%), Positives = 53/171 (30%), Gaps = 13/171 (7%)

Query: 190 SPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV 249
           SP  + L    HD +V +     S      R L+      LP+R++ WA    +    + 
Sbjct: 214 SPSGNALAYAGHDSSVTIAY--PSAPEQPPRALITVKLSQLPLRSLLWAN---E----SA 264

Query: 250 ILTAGH-GGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK 308
           I+ AG+          +          A        +           ++G +   +L  
Sbjct: 265 IVAAGYNYSPILLQGNESGWAHTRDLDAGT--SKTSFTHTGNTGEGREEEGPVSFTALRS 322

Query: 309 AAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTV 359
              ++   G   + +    +H    ++   ++     +T        DG V
Sbjct: 323 TFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITA-FTSSGTDGRV 372

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Length = 402

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 26/157 (16%)

Query: 190 SPPHDYLLA-GCHDGTVALWKFVASDSSI--DSRPLLCFSADTLPIRAVSWAPAESDSDS 246
            P +D ++A G  D TV +W+ +     +     P++     T  +  V+W P      +
Sbjct: 90  CPHNDNVIASGSEDCTVMVWE-IPDGGLVLPLREPVITLEGHTKRVGIVAWHP-----TA 143

Query: 247 ANVILTAGHGG-LKFWDI---RDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAM 301
            NV+L+AG    +  WD+           D+HP    IY +DW  D G +I +   D  +
Sbjct: 144 QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT--IYSVDWSRD-GALICTSCRDKRV 200

Query: 302 RIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAI 338
           R+        + P  G      K +            
Sbjct: 201 RV-------IE-PRKGTV-VAEKDRPHEGTRPVHAVF 228

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 44.5 bits (104), Expect = 8e-05
 Identities = 20/139 (14%), Positives = 42/139 (30%), Gaps = 27/139 (19%)

Query: 187 WSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLL-----CFSADTLPIRAVSWAPAE 241
             T    D++L G  +G++ ++       S      L       +A   PI ++ W P  
Sbjct: 104 IDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP-- 161

Query: 242 SDSDSANVILTAGHGGLKFWDIRD------------PFRPLWDIHPAP-----KFIYGLD 284
                   +L +       + + +            PF P  D            +    
Sbjct: 162 ---RDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSL 218

Query: 285 WLPDPGCVILSFDDGAMRI 303
           + P+   +I   +D ++  
Sbjct: 219 YHPNSLHIITIHEDNSLVF 237

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 27/221 (12%), Positives = 59/221 (26%), Gaps = 29/221 (13%)

Query: 192 PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL 251
              YL+      TV +        S+ S+ +L        I ++       D+    +++
Sbjct: 68  KGIYLVVINAKDTVYVL-------SLYSQKVLTTVFVPGKITSIDT-----DASLDWMLI 115

Query: 252 TAGHGGLKFWDIR------DPFRPLWDIHPAPKF----IYGLDWLPDPGCVILSFDDGAM 301
              +G +  +DI            L      P      I  + W P     +L   +   
Sbjct: 116 GLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVT 175

Query: 302 RIVSLL--KAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTV 359
              SL+  +          PFA             +  +        +  +     D ++
Sbjct: 176 LTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSL 235

Query: 360 HRF-----QLTAKAVEKDHSRNRPMHFLCGSVTEDESAITV 395
             +      +       +   N P        + + + I+ 
Sbjct: 236 VFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISK 276

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Length = 447

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 30/204 (14%), Positives = 60/204 (29%), Gaps = 24/204 (11%)

Query: 185 MEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDS 244
           + W         L   +D T+ LWK    D   +   L     +    R  +        
Sbjct: 99  IRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNL---KEEDGRYRDPTTVTTLRVP 155

Query: 245 DSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIV 304
               + L      ++    R       + H     I  +    D     LS DD  + + 
Sbjct: 156 VFRPMDLM-----VEASPRRIFA----NAHTY--HINSISINSD-YETYLSADDLRINL- 202

Query: 305 SLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG-MVAYCSADGTVHRFQ 363
                 + +  T + F     +  ++   +   I + +    +     Y S+ GT+    
Sbjct: 203 ------WHLEITDRSFNIVDIKPANMEELTEV-ITAAEFHPNSCNTFVYSSSKGTIRLCD 255

Query: 364 LTAKAVEKDHSRNRPMHFLCGSVT 387
           + A A+   HS+         + +
Sbjct: 256 MRASALCDRHSKLFEEPEDPSNRS 279

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Length = 615

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 26/172 (15%), Positives = 55/172 (31%), Gaps = 40/172 (23%)

Query: 195 YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG 254
           +++    D  ++ +     D       L     D  P++   +A +  DS       T G
Sbjct: 221 FVITVGSDRKISCF-----DGK-SGEFLKYIEDDQEPVQGGIFALSWLDS---QKFATVG 271

Query: 255 HGG-LKFWDIRDPFRPL--WDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAA 310
               ++ WD+    + +  W +         +  +      I+S   DG +         
Sbjct: 272 ADATIRVWDVTTS-KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF------- 323

Query: 311 YDVPATGKP---FAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTV 359
           Y++    +     +G      H     +  I ++ V+ L       S DG +
Sbjct: 324 YEL-GHDEVLKTISG------H-----NKGITALTVNPL----ISGSYDGRI 359

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Length = 416

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 25/183 (13%), Positives = 54/183 (29%), Gaps = 29/183 (15%)

Query: 190 SPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV 249
           S  +  +     +G++ L+    ++++     +  FS  +  ++ V +   +      NV
Sbjct: 76  SHNNKIIAGALDNGSLELYS--TNEANNAINSMARFSNHSSSVKTVKFNAKQD-----NV 128

Query: 250 ILTAGHGG-LKFWDIRDPFRPLWDIHPAPKF--------IYGLDWLPDPGCVILS-FDDG 299
           + + G+ G +  WD+        +  P            +  L W      V  S     
Sbjct: 129 LASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN 188

Query: 300 AMRIVSLLKAAYDVPATGKP---FAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD 356
              I       +D+    K     + T          S    W  + S           D
Sbjct: 189 FASI-------WDL-KAKKEVIHLSYTSPNSGIKQQLSVVE-WHPKNSTRVATATGSDND 239

Query: 357 GTV 359
            ++
Sbjct: 240 PSI 242

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 25/178 (14%), Positives = 58/178 (32%), Gaps = 40/178 (22%)

Query: 190 SPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV 249
           S     + +   D T+ ++       +     LL   A    +   +++      D + +
Sbjct: 624 SQDGQRIASCGADKTLQVF------KAETGEKLLDIKAHEDEVLCCAFSS-----DDSYI 672

Query: 250 ILTAGHGGLKFWDIRD--PFRPLWDIHPAPKFIYGLDWLPDPGCVILSF--DDGAMRIVS 305
              +    +K WD           D H     +    +      ++L+   +D  +++  
Sbjct: 673 ATCSADKKVKIWDSATGKLVHTY-DEHSEQ--VNCCHFTNKSNHLLLATGSNDFFLKL-- 727

Query: 306 LLKAAYDVPATGK---PFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVH 360
                +D+    +      G      H     + ++   + S    ++A CSADGT+ 
Sbjct: 728 -----WDL-NQKECRNTMFG------H-----TNSVNHCRFSPDDELLASCSADGTLR 768

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 41.4 bits (97), Expect = 9e-04
 Identities = 22/172 (12%), Positives = 53/172 (30%), Gaps = 37/172 (21%)

Query: 190 SPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV 249
           SP     +       V LW      +      +         +  V ++P   D    + 
Sbjct: 849 SPYDHLAVIALSQYCVELW------NIDSRLKVADCRGHLSWVHGVMFSP---DG---SS 896

Query: 250 ILTAGH-GGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRIVSLL 307
            LTA     ++ W+ +   +    +    K    + +  +   ++L+  +   +++++  
Sbjct: 897 FLTASDDQTIRVWETKKVCKNSAIVL---KQEIDVVFQEN-ETMVLAVDNIRGLQLIAG- 951

Query: 308 KAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTV 359
                   TG+     + Q           +    +S     VA+   DG +
Sbjct: 952 -------KTGQIDYLPEAQ-----------VSCCCLSPHLEYVAFGDEDGAI 985

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 26/203 (12%), Positives = 56/203 (27%), Gaps = 29/203 (14%)

Query: 190 SPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV 249
            P    LL    DG++ ++KF     ++D    L +     P+   ++       ++   
Sbjct: 20  IPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH---PLLCCNFID-----NTDLQ 71

Query: 250 ILTAG-HGGLKFWDIRD--PFRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVS 305
           I      G +   D+     F+ L   + A   +            +++   DG + +  
Sbjct: 72  IYVGTVQGEILKVDLIGSPSFQAL-TNNEAN--LGICRICKYGDDKLIAASWDGLIEV-- 126

Query: 306 LLKAAYDV--PATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQ 363
                 D      G             V    F +        +  +     +  V  F+
Sbjct: 127 -----IDPRNYGDGVIAVKNLNSNNTKVKNKIFTM-----DTNSSRLIVGMNNSQVQWFR 176

Query: 364 LTAKAVEKDHSRNRPMHFLCGSV 386
           L     +        + +    V
Sbjct: 177 LPLCEDDNGTIEESGLKYQIRDV 199

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Length = 342

 Score = 41.0 bits (96), Expect = 6e-04
 Identities = 20/178 (11%), Positives = 55/178 (30%), Gaps = 11/178 (6%)

Query: 187 WSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDS 246
                  D L+A   DG + +         + +   L  +   +  +  +      D++S
Sbjct: 106 RICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTM-----DTNS 160

Query: 247 ANVILTAGHGGLKFWDIRDPFRPLWDIHPAP--KFIYGLDWLPDPGCVILSF-DDGAMRI 303
           + +I+   +  ++++ +         I  +     I  +  LP           DG + +
Sbjct: 161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAV 220

Query: 304 VSL-LKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVH 360
                +      +    F   +          ++ + S++ S     +    +DG + 
Sbjct: 221 EFFDDQGDDYNSSKRFAFRCHRLNLKD--TNLAYPVNSIEFSPRHKFLYTAGSDGIIS 276

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Length = 357

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 30/183 (16%), Positives = 57/183 (31%), Gaps = 34/183 (18%)

Query: 190 SPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV 249
           S    YL  G   G + +W     +      P+         I A+         + A  
Sbjct: 77  SLQQRYLATGDFGGNLHIW-----NLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPE 131

Query: 250 ILTAGH-GGLKFWDIRDPFRPLWDIHPA--------PKFIYGLDWLPDPGCVILSFDDGA 300
           I+T    G +K WD R    P+ ++ P             +G  +  +   V   +D+G 
Sbjct: 132 IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGD 191

Query: 301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSR---LTGMVAYCSADG 357
           +++       +D+                  N  +  + S++  R       +   S +G
Sbjct: 192 IKL-------FDL-RNMAL--------RWETNIKN-GVCSLEFDRKDISMNKLVATSLEG 234

Query: 358 TVH 360
             H
Sbjct: 235 KFH 237

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	568
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.98
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.98
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.97
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.97
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.97
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.97
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.97
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.97
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.97
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.97
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.97
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.97
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.97
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.97
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.96
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.96
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.96
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.96
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.96
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.96
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.96
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.96
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.95
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.95
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.95
3jro_A	753	Fusion protein of protein transport protein SEC13	99.95
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.95
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.95
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.95
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.95
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.95
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.95
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.95
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.95
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.95
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.95
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.95
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.95
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.95
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.95
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.95
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.94
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.94
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.94
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.94
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.94
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.94
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.94
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.94
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.94
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.94
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.94
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.94
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.94
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.94
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.94
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.93
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.93
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.93
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.93
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.93
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.93
3jro_A	753	Fusion protein of protein transport protein SEC13	99.93
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.93
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.93
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.92
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.92
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.92
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.92
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.91
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.91
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.91
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.91
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.9
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.9
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.89
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.89
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.89
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.87
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.87
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.86
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.85
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.85
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.85
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.84
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.83
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.83
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.76
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.76
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.76
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.75
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.75
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.74
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.74
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.73
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.72
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.71
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.71
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.7
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.7
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.7
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.7
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.68
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.68
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.67
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.67
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.66
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.66
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.66
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.65
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.65
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.64
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.63
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.61
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.59
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.58
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.54
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.53
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.52
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.48
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.47
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.47
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.47
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.46
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.46
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.42
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.42
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.39
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.39
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.39
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.36
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.36
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.35
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.35
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.3
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.3
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.29
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.27
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.26
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.26
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.26
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.24
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.24
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.2
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.19
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.15
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.15
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.13
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.13
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.11
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.11
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.11
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.09
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.09
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.04
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.03
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.03
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.02
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.02
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.02
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.0
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.0
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.98
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.94
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.94
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.91
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.85
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.82
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.82
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.81
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.8
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.76
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.59
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.54
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.53
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.53
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.53
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.51
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.49
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.44
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.44
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.43
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.41
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.38
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.3
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.29
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.21
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.2
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.19
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.16
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.13
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.06
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.06
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.04
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.99
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.94
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.94
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.93
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.86
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.85
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.82
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.81
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.81
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.79
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.72
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.71
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.71
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.67
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.66
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.62
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.56
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.51
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.46
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.45
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.44
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.43
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.4
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.4
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.4
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.35
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.33
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.32
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.3
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.29
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.21
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.21
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.2
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.2
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.19
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.13
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.13
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.08
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.03
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.02
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.97
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.96
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.88
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.86
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.84
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.81
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.79
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.79
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.77
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.69
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.66
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.58
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.56
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.47
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.42
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.29
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.13
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.12
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.08
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.79
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.73
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.73
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.71
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	95.66
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	95.62
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.47
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.28
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.17
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.95
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	94.64
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.54
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	94.44
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.28
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.23
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.19
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.84
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	93.82
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	93.81
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	93.72
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.54
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	93.53
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.51
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	92.99
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	92.91
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	92.68
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	91.86
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	91.86
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	91.32
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	90.98
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	89.13
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	88.5
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	88.34
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	88.34
3ott_A	758	Two-component system sensor histidine kinase; beta	87.98
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	87.55
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	85.79
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	85.7
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	83.57
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	82.44
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	81.92
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	80.74
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	80.47

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.6e-33  Score=278.34  Aligned_cols=259  Identities=15%  Similarity=0.183  Sum_probs=214.8

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCC
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGT  157 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~  157 (568)
                      ...+.+|.+ .|++++|+|++          .+|++|+.||+|+|||+.++..+..+..+..              +.++
T Consensus         6 ~~~~~~h~~-~V~~~~fsp~~----------~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s   74 (304)
T 2ynn_A            6 KKTFSNRSD-RVKGIDFHPTE----------PWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS   74 (304)
T ss_dssp             EEEEEEECS-CEEEEEECSSS----------SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE
T ss_pred             EEeecCCCC-ceEEEEECCCC----------CEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEEC
Confidence            344678998 55599999999          7999999999999999999988888876654              5678


Q ss_pred             CCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEE
Q 008363          158 DPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAV  235 (568)
Q Consensus       158 ~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v  235 (568)
                      .+..+++|+..+  +...+.+|...| .+++|+  |++.+|++|+.||+|++||+...     ..+...+.+|...|.++
T Consensus        75 ~d~~i~vwd~~~~~~~~~~~~h~~~v-~~~~~~--~~~~~l~sgs~D~~v~lWd~~~~-----~~~~~~~~~h~~~v~~v  146 (304)
T 2ynn_A           75 DDFRIRVFNYNTGEKVVDFEAHPDYI-RSIAVH--PTKPYVLSGSDDLTVKLWNWENN-----WALEQTFEGHEHFVMCV  146 (304)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCE-EEEEEC--SSSSEEEEEETTSCEEEEEGGGT-----TEEEEEECCCCSCEEEE
T ss_pred             CCCEEEEEECCCCcEEEEEeCCCCcE-EEEEEc--CCCCEEEEECCCCeEEEEECCCC-----cchhhhhcccCCcEEEE
Confidence            899999999876  555678999999 999999  88999999999999999999865     24566788999999999


Q ss_pred             EEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEEccccccC
Q 008363          236 SWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLP--DPGCVILSFDDGAMRIVSLLKAAYD  312 (568)
Q Consensus       236 ~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp--~~~~l~s~~~dg~I~lwd~~~~~~~  312 (568)
                      +|+|.+     +.+|++|+.|+ |++||++..........+|...+..++|+|  ++.+|++++.|++|++||++.    
T Consensus       147 ~~~p~~-----~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~----  217 (304)
T 2ynn_A          147 AFNPKD-----PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT----  217 (304)
T ss_dssp             EECTTC-----TTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT----
T ss_pred             EECCCC-----CCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC----
Confidence            999953     27999999999 999999877443444456778899999987  778999999999999999953    


Q ss_pred             CCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCC
Q 008363          313 VPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDES  391 (568)
Q Consensus       313 ~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~  391 (568)
                          +        .++..+.+|...|.+++|+|++.+|++++.||+|++||+.+++..+...... ....|.++.+++.
T Consensus       218 ----~--------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~  283 (304)
T 2ynn_A          218 ----K--------SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL-ERSWCIATHPTGR  283 (304)
T ss_dssp             ----T--------EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS-SSEEEEEECTTCG
T ss_pred             ----C--------ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC-ccEEEEEECCCCC
Confidence                4        3457899999999999999999999999999999999999887766543322 2233445555553

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.7e-33  Score=293.05  Aligned_cols=267  Identities=11%  Similarity=0.166  Sum_probs=230.3

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCC
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGT  157 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~  157 (568)
                      ...+.+|.+ .|++++|+|++          .+|++|+.||+|+|||+.+++....+.+|..              ++++
T Consensus       101 ~~~l~gh~~-~V~~~~~~p~~----------~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs  169 (410)
T 1vyh_C          101 KYALSGHRS-PVTRVIFHPVF----------SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS  169 (410)
T ss_dssp             SCEEECCSS-CEEEEEECSSS----------SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEeecccCC-cEEEEEEcCCC----------CEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEe
Confidence            445679998 55599999999          7999999999999999999998888887765              5677


Q ss_pred             CCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEE
Q 008363          158 DPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAV  235 (568)
Q Consensus       158 ~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v  235 (568)
                      .++.+++|+...  +...+.+|...| .+++|+  |++.+|++|+.||+|++||+.++      .++..+.+|...|.++
T Consensus       170 ~D~~i~iwd~~~~~~~~~~~~h~~~V-~~v~~~--p~~~~l~s~s~D~~i~~wd~~~~------~~~~~~~~h~~~v~~~  240 (410)
T 1vyh_C          170 ADMTIKLWDFQGFECIRTMHGHDHNV-SSVSIM--PNGDHIVSASRDKTIKMWEVQTG------YCVKTFTGHREWVRMV  240 (410)
T ss_dssp             TTSCCCEEETTSSCEEECCCCCSSCE-EEEEEC--SSSSEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEE
T ss_pred             CCCeEEEEeCCCCceeEEEcCCCCCE-EEEEEe--CCCCEEEEEeCCCeEEEEECCCC------cEEEEEeCCCccEEEE
Confidence            889999998765  666778999999 999999  88999999999999999999977      7888999999999999


Q ss_pred             EEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCC--------------------CCEEEE
Q 008363          236 SWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPD--------------------PGCVIL  294 (568)
Q Consensus       236 ~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~--------------------~~~l~s  294 (568)
                      .|+|++      .+|++|+.|+ |++||+++. .+...+.+|...|.+++|+|+                    +.+|++
T Consensus       241 ~~~~~g------~~l~s~s~D~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s  313 (410)
T 1vyh_C          241 RPNQDG------TLIASCSNDQTVRVWVVATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS  313 (410)
T ss_dssp             EECTTS------SEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred             EECCCC------CEEEEEcCCCeEEEEECCCC-ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEE
Confidence            999999      8999999999 999999987 777888999999999999996                    678999


Q ss_pred             EeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCC
Q 008363          295 SFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHS  374 (568)
Q Consensus       295 ~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~  374 (568)
                      |+.|++|++||++.        |        .++..+.+|...|++++|+|++.+|++++.||.|++||+.++.......
T Consensus       314 gs~D~~i~iwd~~~--------~--------~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~  377 (410)
T 1vyh_C          314 GSRDKTIKMWDVST--------G--------MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN  377 (410)
T ss_dssp             EETTSEEEEEETTT--------T--------EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred             EeCCCeEEEEECCC--------C--------ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc
Confidence            99999999999953        4        3457889999999999999999999999999999999998776554433


Q ss_pred             CCCcceeeeecccCCCCceEEcccCCCC
Q 008363          375 RNRPMHFLCGSVTEDESAITVNTPLDNT  402 (568)
Q Consensus       375 ~~~~~~~~~~s~~~~~~~i~~~~~~~~~  402 (568)
                      .+. ..+.+..+++++..++.++....+
T Consensus       378 ~h~-~~v~~l~~~~~~~~l~sgs~D~~i  404 (410)
T 1vyh_C          378 AHE-HFVTSLDFHKTAPYVVTGSVDQTV  404 (410)
T ss_dssp             CCS-SCEEEEEECSSSSCEEEEETTSEE
T ss_pred             CCC-CcEEEEEEcCCCCEEEEEeCCCcE
Confidence            322 235566788888888777655444

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.6e-32  Score=275.93  Aligned_cols=268  Identities=15%  Similarity=0.192  Sum_probs=220.6

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCce--eeEEeccCC--------------ccCCC
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRT--MKAIYLSSM--------------KEGTD  158 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~--~~~l~~~~~--------------~~~~~  158 (568)
                      ..+|.+ .|++++|+|++.      ....+|++|+.|++|+||++..+..  ...+.+|..              ++++.
T Consensus        28 ~~~H~~-~V~~v~~~~~~~------~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~  100 (321)
T 3ow8_A           28 EQAHDD-AIWSVAWGTNKK------ENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL  100 (321)
T ss_dssp             TTSSSS-CEEEEEEC-------------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred             cccCCC-cEEEEEEecCCC------CCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC
Confidence            357988 666999998631      0016999999999999999987543  334555543              46788


Q ss_pred             CceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEE
Q 008363          159 PRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVS  236 (568)
Q Consensus       159 ~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~  236 (568)
                      ++.+++|+..+  +...+..|...+ .+++|+  |++.+|++|+.||.|++|++..+      .....+..|...|.+++
T Consensus       101 D~~i~lWd~~~~~~~~~~~~~~~~~-~~~~~s--pdg~~l~~g~~dg~v~i~~~~~~------~~~~~~~~~~~~v~~~~  171 (321)
T 3ow8_A          101 DAHIRLWDLENGKQIKSIDAGPVDA-WTLAFS--PDSQYLATGTHVGKVNIFGVESG------KKEYSLDTRGKFILSIA  171 (321)
T ss_dssp             TSEEEEEETTTTEEEEEEECCTTCC-CCEEEC--TTSSEEEEECTTSEEEEEETTTC------SEEEEEECSSSCEEEEE
T ss_pred             CCcEEEEECCCCCEEEEEeCCCccE-EEEEEC--CCCCEEEEEcCCCcEEEEEcCCC------ceeEEecCCCceEEEEE
Confidence            99999999865  445566788888 999999  88999999999999999999876      67778889999999999


Q ss_pred             EccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCC
Q 008363          237 WAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPA  315 (568)
Q Consensus       237 ~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~  315 (568)
                      |+|++      ++||+++.|+ |++||++++ ..+..+.+|...|++++|+|++++|++++.|++|++||++.       
T Consensus       172 ~spdg------~~lasg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~-------  237 (321)
T 3ow8_A          172 YSPDG------KYLASGAIDGIINIFDIATG-KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH-------  237 (321)
T ss_dssp             ECTTS------SEEEEEETTSCEEEEETTTT-EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT-------
T ss_pred             ECCCC------CEEEEEcCCCeEEEEECCCC-cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC-------
Confidence            99999      8999999999 999999987 88888999999999999999999999999999999999953       


Q ss_pred             CCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEE
Q 008363          316 TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITV  395 (568)
Q Consensus       316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~  395 (568)
                       ++        .+..+.+|...|.+++|+|++.+|++++.|++|++||+.++........+. ..+.+.++++++..|+.
T Consensus       238 -~~--------~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~-~~v~~v~~s~~g~~l~s  307 (321)
T 3ow8_A          238 -AN--------LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ-DQVWGVKYNGNGSKIVS  307 (321)
T ss_dssp             -CC--------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEE
T ss_pred             -cc--------eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC-CcEEEEEECCCCCEEEE
Confidence             32        346889999999999999999999999999999999999887766543333 23456678888888887


Q ss_pred             cccCCCC
Q 008363          396 NTPLDNT  402 (568)
Q Consensus       396 ~~~~~~~  402 (568)
                      +.....+
T Consensus       308 ~~~d~~i  314 (321)
T 3ow8_A          308 VGDDQEI  314 (321)
T ss_dssp             EETTCCE
T ss_pred             EeCCCeE
Confidence            6655444

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6.5e-32  Score=273.70  Aligned_cols=267  Identities=17%  Similarity=0.185  Sum_probs=222.5

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccC
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEG  156 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~  156 (568)
                      ....+.+|.+ .|++++|+|++          .+|++|+.||+|+|||+.++..+..+..+..              +.+
T Consensus        47 ~~~~l~gH~~-~v~~~~~s~d~----------~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  115 (340)
T 1got_B           47 TRRTLRGHLA-KIYAMHWGTDS----------RLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG  115 (340)
T ss_dssp             EEEEECCCSS-CEEEEEECTTS----------SEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             hheeecCCCC-ceEEEEECCCC----------CEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEE
Confidence            4455679999 55699999999          8999999999999999999888877766544              456


Q ss_pred             CCCceEEEeecce------ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCC
Q 008363          157 TDPRFVKLEPVFR------CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTL  230 (568)
Q Consensus       157 ~~~~~v~~~~~~~------~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~  230 (568)
                      +.++.+++|+...      ....+.+|...| .++.|+  +++ .|++|+.||+|++||+.++      .++..+.+|..
T Consensus       116 ~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v-~~~~~~--~~~-~l~s~s~d~~i~~wd~~~~------~~~~~~~~h~~  185 (340)
T 1got_B          116 GLDNICSIYNLKTREGNVRVSRELAGHTGYL-SCCRFL--DDN-QIVTSSGDTTCALWDIETG------QQTTTFTGHTG  185 (340)
T ss_dssp             ETTCEEEEEETTTCSBSCEEEEEEECCSSCE-EEEEEE--ETT-EEEEEETTSCEEEEETTTT------EEEEEECCCSS
T ss_pred             eCCCeEEEEECccCCCcceeEEEecCCCccE-EEEEEC--CCC-cEEEEECCCcEEEEECCCC------cEEEEEcCCCC
Confidence            7888999998754      334567899999 999998  554 6999999999999999876      78889999999


Q ss_pred             CeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccc
Q 008363          231 PIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKA  309 (568)
Q Consensus       231 ~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~  309 (568)
                      .|.+++|+|++      .+|++|+.|+ |++||++++ .++..+.+|...|++++|+|++.+|++++.||+|++||++. 
T Consensus       186 ~v~~~~~~~~~------~~l~sg~~d~~v~~wd~~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~-  257 (340)
T 1got_B          186 DVMSLSLAPDT------RLFVSGACDASAKLWDVREG-MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA-  257 (340)
T ss_dssp             CEEEEEECTTS------SEEEEEETTSCEEEEETTTC-SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-
T ss_pred             ceEEEEECCCC------CEEEEEeCCCcEEEEECCCC-eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC-
Confidence            99999999998      8999999999 999999987 78888999999999999999999999999999999999954 


Q ss_pred             ccCCCCCCCCccCccccceEEEe--cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeeccc
Q 008363          310 AYDVPATGKPFAGTKQQGLHLVN--CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVT  387 (568)
Q Consensus       310 ~~~~~~~g~~~~~~~~~~l~~~~--~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~  387 (568)
                             ++.        +..+.  .+...|++++|+|++.+|++|+.||.|++||+.++........+. ..+.|.+++
T Consensus       258 -------~~~--------~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~-~~v~~~~~s  321 (340)
T 1got_B          258 -------DQE--------LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD-NRVSCLGVT  321 (340)
T ss_dssp             -------TEE--------EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEEC
T ss_pred             -------CcE--------EEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCC-CcEEEEEEc
Confidence                   222        23433  233579999999999999999999999999998776554433332 245677889


Q ss_pred             CCCCceEEcccCCCC
Q 008363          388 EDESAITVNTPLDNT  402 (568)
Q Consensus       388 ~~~~~i~~~~~~~~~  402 (568)
                      +++..|+.++....+
T Consensus       322 ~dg~~l~s~s~D~~i  336 (340)
T 1got_B          322 DDGMAVATGSWDSFL  336 (340)
T ss_dssp             TTSSCEEEEETTSCE
T ss_pred             CCCCEEEEEcCCccE
Confidence            999888887765544

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.4e-32  Score=272.13  Aligned_cols=228  Identities=17%  Similarity=0.289  Sum_probs=202.7

Q ss_pred             EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCC
Q 008363           94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDP  159 (568)
Q Consensus        94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~  159 (568)
                      .+.+|...+. +++|+|++          .+|++++.|++|+|||+.+++++..+..+..              +.++.+
T Consensus        75 ~l~gh~~~v~-~~~~~~~~----------~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~d  143 (321)
T 3ow8_A           75 SLEGHQLGVV-SVDISHTL----------PIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHV  143 (321)
T ss_dssp             EECCCSSCEE-EEEECSSS----------SEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTT
T ss_pred             eeccCCCCEE-EEEECCCC----------CEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCC
Confidence            4568998555 99999999          7999999999999999999988888765543              456778


Q ss_pred             ceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEE
Q 008363          160 RFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSW  237 (568)
Q Consensus       160 ~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~  237 (568)
                      +.+++|+...  ....+..|...| .+++|+  |++.+|++|+.||+|++||+.++      +++..+.+|..+|.+++|
T Consensus       144 g~v~i~~~~~~~~~~~~~~~~~~v-~~~~~s--pdg~~lasg~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~l~~  214 (321)
T 3ow8_A          144 GKVNIFGVESGKKEYSLDTRGKFI-LSIAYS--PDGKYLASGAIDGIINIFDIATG------KLLHTLEGHAMPIRSLTF  214 (321)
T ss_dssp             SEEEEEETTTCSEEEEEECSSSCE-EEEEEC--TTSSEEEEEETTSCEEEEETTTT------EEEEEECCCSSCCCEEEE
T ss_pred             CcEEEEEcCCCceeEEecCCCceE-EEEEEC--CCCCEEEEEcCCCeEEEEECCCC------cEEEEEcccCCceeEEEE
Confidence            8899998765  333456778888 999999  88999999999999999999876      888899999999999999


Q ss_pred             ccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCC
Q 008363          238 APAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPAT  316 (568)
Q Consensus       238 ~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~  316 (568)
                      +|++      .+|++++.|+ |++||++.. ..+..+.+|...|.+++|+|++.+|++++.|++|++||++.        
T Consensus       215 spd~------~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~--------  279 (321)
T 3ow8_A          215 SPDS------QLLVTASDDGYIKIYDVQHA-NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT--------  279 (321)
T ss_dssp             CTTS------CEEEEECTTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------
T ss_pred             cCCC------CEEEEEcCCCeEEEEECCCc-ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC--------
Confidence            9999      8999999999 999999977 77788999999999999999999999999999999999953        


Q ss_pred             CCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          317 GKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       317 g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                      +        .++..+.+|...|++++|+|++.+|++++.||.|++||+
T Consensus       280 ~--------~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          280 R--------TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             T--------EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             C--------EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            4        345788999999999999999999999999999999997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2e-31  Score=271.85  Aligned_cols=270  Identities=15%  Similarity=0.162  Sum_probs=221.0

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccC
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEG  156 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~  156 (568)
                      ....+.+|.+ .|++++|+|++          .+||+|+.||+|+|||..++.....+..+..              +.+
T Consensus        56 ~~~~l~gH~~-~V~~~~~s~d~----------~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg  124 (354)
T 2pbi_B           56 TRRTLKGHGN-KVLCMDWCKDK----------RRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACG  124 (354)
T ss_dssp             EEEEEECCSS-CEEEEEECTTS----------SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEE
T ss_pred             EEEEecCCCC-eEEEEEECCCC----------CEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEe
Confidence            3455679999 55699999999          7999999999999999998887776655432              567


Q ss_pred             CCCceEEEeecce--------ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC
Q 008363          157 TDPRFVKLEPVFR--------CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD  228 (568)
Q Consensus       157 ~~~~~v~~~~~~~--------~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h  228 (568)
                      +.+..+.+|+...        ....+.+|...| .+++|+  +++..|++|+.||+|++||+.++      +++..+.+|
T Consensus       125 ~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~~--~~~~~l~t~s~D~~v~lwd~~~~------~~~~~~~~h  195 (354)
T 2pbi_B          125 GLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYL-SACSFT--NSDMQILTASGDGTCALWDVESG------QLLQSFHGH  195 (354)
T ss_dssp             STTSEEEEEECCCCTTCCSGGGCEEEEECSSCE-EEEEEC--SSSSEEEEEETTSEEEEEETTTC------CEEEEEECC
T ss_pred             eCCCCEEEEEEeccccccccccceeeeccCCcE-EEEEEe--CCCCEEEEEeCCCcEEEEeCCCC------eEEEEEcCC
Confidence            7888889987642        223445799999 999999  78889999999999999999877      788999999


Q ss_pred             CCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 008363          229 TLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLL  307 (568)
Q Consensus       229 ~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~  307 (568)
                      ...|.+++|+|..    ...+|++|+.|+ |++||++++ .++..+.+|...|++++|+|++.+|++++.|++|++||++
T Consensus       196 ~~~v~~~~~~~~~----~g~~l~sgs~Dg~v~~wd~~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~  270 (354)
T 2pbi_B          196 GADVLCLDLAPSE----TGNTFVSGGCDKKAMVWDMRSG-QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR  270 (354)
T ss_dssp             SSCEEEEEECCCS----SCCEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCeEEEEEEeCC----CCCEEEEEeCCCeEEEEECCCC-cEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            9999999998853    127999999999 999999987 7888899999999999999999999999999999999996


Q ss_pred             ccccCCCCCCCCccCccccceEEEec--CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeec
Q 008363          308 KAAYDVPATGKPFAGTKQQGLHLVNC--SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGS  385 (568)
Q Consensus       308 ~~~~~~~~~g~~~~~~~~~~l~~~~~--h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s  385 (568)
                      .        ++        .+..+..  +...+.+++|+|++.+|++++.|+.|++||+.++........+. ..+.+.+
T Consensus       271 ~--------~~--------~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~-~~v~~l~  333 (354)
T 2pbi_B          271 A--------DR--------EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE-NRVSTLR  333 (354)
T ss_dssp             T--------TE--------EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS-SCEEEEE
T ss_pred             C--------Cc--------EEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCC-CcEEEEE
Confidence            4        21        1234433  34578999999999999999999999999998776544333322 3456678


Q ss_pred             ccCCCCceEEcccCCCC
Q 008363          386 VTEDESAITVNTPLDNT  402 (568)
Q Consensus       386 ~~~~~~~i~~~~~~~~~  402 (568)
                      +++++..|++++....+
T Consensus       334 ~spdg~~l~sgs~D~~v  350 (354)
T 2pbi_B          334 VSPDGTAFCSGSWDHTL  350 (354)
T ss_dssp             ECTTSSCEEEEETTSEE
T ss_pred             ECCCCCEEEEEcCCCCE
Confidence            89999998887765443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.8e-32  Score=282.83  Aligned_cols=236  Identities=14%  Similarity=0.236  Sum_probs=206.1

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCC
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGT  157 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~  157 (568)
                      ...+.+|.+ .|.+++|+|++          .+|++|+.||+|+|||+.+++++..+.+|..              ++++
T Consensus       143 ~~~l~~h~~-~V~~v~~~~~~----------~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s  211 (410)
T 1vyh_C          143 ERTLKGHTD-SVQDISFDHSG----------KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS  211 (410)
T ss_dssp             CEEECCCSS-CEEEEEECTTS----------SEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEE
T ss_pred             EEEEeccCC-cEEEEEEcCCC----------CEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence            345568988 55599999999          7999999999999999999988888877654              5678


Q ss_pred             CCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEE
Q 008363          158 DPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAV  235 (568)
Q Consensus       158 ~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v  235 (568)
                      .++.+++|+..+  +...+.+|...| .++.|+  +++.+|++|+.||+|++||+.+.      .+...+.+|...|.++
T Consensus       212 ~D~~i~~wd~~~~~~~~~~~~h~~~v-~~~~~~--~~g~~l~s~s~D~~v~vwd~~~~------~~~~~~~~h~~~v~~~  282 (410)
T 1vyh_C          212 RDKTIKMWEVQTGYCVKTFTGHREWV-RMVRPN--QDGTLIASCSNDQTVRVWVVATK------ECKAELREHRHVVECI  282 (410)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCE-EEEEEC--TTSSEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEE
T ss_pred             CCCeEEEEECCCCcEEEEEeCCCccE-EEEEEC--CCCCEEEEEcCCCeEEEEECCCC------ceeeEecCCCceEEEE
Confidence            899999999876  566778999999 999988  88999999999999999999876      7888899999999999


Q ss_pred             EEccCCCC--------------CCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 008363          236 SWAPAESD--------------SDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGA  300 (568)
Q Consensus       236 ~~~p~~~~--------------~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~  300 (568)
                      +|+|++..              .....+|++|+.|+ |++||++++ .++..+.+|...|++++|+|++++|++++.|++
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~  361 (410)
T 1vyh_C          283 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT  361 (410)
T ss_dssp             EECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSCEEEEETTTE
T ss_pred             EEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC-ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence            99996300              00126899999999 999999987 888889999999999999999999999999999


Q ss_pred             EEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                      |++||++.        +++        +..+.+|...|++++|+|++.+|++|+.||+|++|++
T Consensus       362 i~vwd~~~--------~~~--------~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          362 LRVWDYKN--------KRC--------MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             EEEECCTT--------SCC--------CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             EEEEECCC--------Cce--------EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            99999943        433        4688999999999999999999999999999999986

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7e-32  Score=277.89  Aligned_cols=273  Identities=18%  Similarity=0.263  Sum_probs=222.9

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccC
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEG  156 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~  156 (568)
                      ....+.+|.+ .|++++|+|++          .+|++|+.||+|+|||+.+++....+..|..              +.+
T Consensus        58 ~~~~l~gH~~-~V~~~~~sp~~----------~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~  126 (380)
T 3iz6_a           58 CCRTLQGHSG-KVYSLDWTPEK----------NWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACG  126 (380)
T ss_dssp             EEEEECCCSS-CEEEEEECTTS----------SCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEEC
T ss_pred             Eeeccccccc-EEEEEEEcCCC----------CEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEe
Confidence            3455679999 55699999999          7999999999999999999988888877654              567


Q ss_pred             CCCceEEEeecce---------ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe--
Q 008363          157 TDPRFVKLEPVFR---------CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF--  225 (568)
Q Consensus       157 ~~~~~v~~~~~~~---------~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~--  225 (568)
                      +.+..+++|+...         ....+.+|...| .++.|.|. .+..|++|+.|++|++||+.++      ..+..+  
T Consensus       127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v-~~~~~~~~-~~~~l~s~s~D~~i~~wd~~~~------~~~~~~~~  198 (380)
T 3iz6_a          127 GLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYA-SSCQYVPD-QETRLITGSGDQTCVLWDVTTG------QRISIFGS  198 (380)
T ss_dssp             CSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCC-CCCBCCSS-SSSCEEEECTTSCEEEECTTTC------CEEEEECC
T ss_pred             eCCCcEEEEECCCCccccCCccceeeccCCCcce-EEEEEecC-CCCEEEEECCCCcEEEEEcCCC------cEEEEeec
Confidence            8889999998753         234567999999 99999843 2457999999999999999977      666666  


Q ss_pred             ---eCCCCCeeEEEEcc-CCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 008363          226 ---SADTLPIRAVSWAP-AESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGA  300 (568)
Q Consensus       226 ---~~h~~~V~~v~~~p-~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~  300 (568)
                         .+|...|.+++|++ ++      ++|++|+.|+ |++||++....++..+.+|.+.|++++|+|++.+|++++.||+
T Consensus       199 ~~~~~h~~~v~~~~~~~~~~------~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~  272 (380)
T 3iz6_a          199 EFPSGHTADVLSLSINSLNA------NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT  272 (380)
T ss_dssp             CSSSSCCSCEEEEEECSSSC------CEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSC
T ss_pred             ccCCCCccCeEEEEeecCCC------CEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCe
Confidence               67999999999988 44      8999999999 9999999665788889999999999999999999999999999


Q ss_pred             EEEEEccccccCCCCCCCCccCccccceEEEecCC-------CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccC
Q 008363          301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS-------FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDH  373 (568)
Q Consensus       301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~-------~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~  373 (568)
                      |++||++.        |+.        +..+..+.       ..|++++|+|++.+|++|+.||.|++||+..+......
T Consensus       273 i~lwd~~~--------~~~--------~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~  336 (380)
T 3iz6_a          273 CRLFDMRT--------GHQ--------LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL  336 (380)
T ss_dssp             EEEEETTT--------TEE--------EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             EEEEECCC--------CcE--------EEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE
Confidence            99999964        432        23444332       35899999999999999999999999999877654432


Q ss_pred             C---CCCcceeeeecccCCCCceEEcccCCCCCc
Q 008363          374 S---RNRPMHFLCGSVTEDESAITVNTPLDNTPV  404 (568)
Q Consensus       374 ~---~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~  404 (568)
                      .   ......+.|.++++++..|+.++....+.+
T Consensus       337 ~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~i  370 (380)
T 3iz6_a          337 GTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKI  370 (380)
T ss_dssp             CCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEE
T ss_pred             ecccCCCCCceEEEEECCCCCEEEEeeCCCCEEE
Confidence            1   112234567789999999998887766644

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.7e-31  Score=270.93  Aligned_cols=241  Identities=15%  Similarity=0.230  Sum_probs=194.6

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      ...|..+ |.+++|+|++           .|++|+.||+|+|||+.+++.+..+..                      ..
T Consensus        78 ~~~~~~~-v~~~~~s~d~-----------~l~~~s~dg~v~lWd~~~~~~~~~~~~----------------------~~  123 (344)
T 4gqb_B           78 GVQTEAG-VADLTWVGER-----------GILVASDSGAVELWELDENETLIVSKF----------------------CK  123 (344)
T ss_dssp             EEEESSC-EEEEEEETTT-----------EEEEEETTSEEEEEEECTTSSCEEEEE----------------------EE
T ss_pred             eeccCCC-EEEEEEeCCC-----------eEEEEECCCEEEEEeccCCCceeEeec----------------------cc
Confidence            4456664 4599999986           788999999999999999876654311                      11


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG  254 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s  254 (568)
                      .+|...| ++|+|+  |+|++|++|+.||+|+|||+.++      +++..+.+|...|.+++|++++     ..+|++++
T Consensus       124 ~~H~~~V-~~v~~s--pdg~~l~sgs~d~~i~iwd~~~~------~~~~~~~~h~~~V~~~~~~~~~-----~~~l~s~s  189 (344)
T 4gqb_B          124 YEHDDIV-STVSVL--SSGTQAVSGSKDICIKVWDLAQQ------VVLSSYRAHAAQVTCVAASPHK-----DSVFLSCS  189 (344)
T ss_dssp             ECCSSCE-EEEEEC--TTSSEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECSSC-----TTEEEEEE
T ss_pred             cCCCCCE-EEEEEC--CCCCEEEEEeCCCeEEEEECCCC------cEEEEEcCcCCceEEEEecCCC-----CCceeeec
Confidence            6899999 999999  89999999999999999999977      8899999999999999999997     26899999


Q ss_pred             CCC-EEEEECCCCCcceeeeC--CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363          255 HGG-LKFWDIRDPFRPLWDIH--PAPKFIYGLDWLPD-PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL  330 (568)
Q Consensus       255 ~d~-v~lwD~~~~~~~~~~~~--~h~~~i~~l~~sp~-~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~  330 (568)
                      .|+ |++||++++ +++..+.  .|...+++++|+|+ +++|++|+.||+|+|||++.        +++        +..
T Consensus       190 ~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~--------~~~--------~~~  252 (344)
T 4gqb_B          190 EDNRILLWDTRCP-KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS--------TSC--------VLS  252 (344)
T ss_dssp             TTSCEEEEETTSS-SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----------C--------CEE
T ss_pred             ccccccccccccc-ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC--------CcE--------EEE
Confidence            999 999999987 6655543  45667899999995 56788899999999999954        544        468


Q ss_pred             EecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCce-EEcccCCCC
Q 008363          331 VNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAI-TVNTPLDNT  402 (568)
Q Consensus       331 ~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i-~~~~~~~~~  402 (568)
                      +.+|...|++++|+|++ .+|++|+.|++|+|||+.++++... ..+. ..+.+.++++++..+ +.++....+
T Consensus       253 ~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~-~~H~-~~V~~v~~sp~~~~llas~s~D~~v  324 (344)
T 4gqb_B          253 SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS-QAHR-DFVRDATWSPLNHSLLTTVGWDHQV  324 (344)
T ss_dssp             EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE-CCCS-SCEEEEEECSSSTTEEEEEETTSCE
T ss_pred             EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE-cCCC-CCEEEEEEeCCCCeEEEEEcCCCeE
Confidence            99999999999999997 6899999999999999998876543 2222 235566788888764 455554444

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.9e-31  Score=270.86  Aligned_cols=214  Identities=18%  Similarity=0.332  Sum_probs=184.0

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS  171 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~  171 (568)
                      +..+.+|.++.+++++|+|++          .+||+|+.|++|+|||+.++......                       
T Consensus         8 ~~~~~~h~~~~v~~l~~sp~g----------~~las~~~D~~i~iw~~~~~~~~~~~-----------------------   54 (345)
T 3fm0_A            8 LGRVPAHPDSRCWFLAWNPAG----------TLLASCGGDRRIRIWGTEGDSWICKS-----------------------   54 (345)
T ss_dssp             EEEECCSTTSCEEEEEECTTS----------SCEEEEETTSCEEEEEEETTEEEEEE-----------------------
T ss_pred             eeeecCCCCCcEEEEEECCCC----------CEEEEEcCCCeEEEEEcCCCcceeee-----------------------
Confidence            445668988678899999999          89999999999999999876533221                       


Q ss_pred             ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363          172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la  251 (568)
                      ....+|...| .+++|+  |++.+|++|+.|++|+|||+....    ..++..+.+|...|.+++|+|++      ++|+
T Consensus        55 ~~~~~h~~~v-~~~~~s--p~g~~l~s~s~D~~v~iw~~~~~~----~~~~~~~~~h~~~v~~v~~sp~~------~~l~  121 (345)
T 3fm0_A           55 VLSEGHQRTV-RKVAWS--PCGNYLASASFDATTCIWKKNQDD----FECVTTLEGHENEVKSVAWAPSG------NLLA  121 (345)
T ss_dssp             EECSSCSSCE-EEEEEC--TTSSEEEEEETTSCEEEEEECCC-----EEEEEEECCCSSCEEEEEECTTS------SEEE
T ss_pred             eeccccCCcE-EEEEEC--CCCCEEEEEECCCcEEEEEccCCC----eEEEEEccCCCCCceEEEEeCCC------CEEE
Confidence            0116899999 999999  889999999999999999998652    25678899999999999999999      8999


Q ss_pred             EEcCCC-EEEEECCCCC--cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363          252 TAGHGG-LKFWDIRDPF--RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       252 s~s~d~-v~lwD~~~~~--~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                      +++.|+ |++||++...  .++..+.+|...|++++|+|++.+|++++.|++|++||++.        +..      .++
T Consensus       122 s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~--------~~~------~~~  187 (345)
T 3fm0_A          122 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE--------DDW------VCC  187 (345)
T ss_dssp             EEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEET--------TEE------EEE
T ss_pred             EEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecC--------CCE------EEE
Confidence            999999 9999998753  34567889999999999999999999999999999999853        211      234


Q ss_pred             EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      ..+.+|...|++++|+|++.+|++++.|++|+||++.
T Consensus       188 ~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          188 ATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             EEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence            6888999999999999999999999999999999974

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.5e-31  Score=263.02  Aligned_cols=252  Identities=15%  Similarity=0.185  Sum_probs=198.9

Q ss_pred             EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC--CceeeEEeccCCccCCCCceEEEeeccee
Q 008363           93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL--LRTMKAIYLSSMKEGTDPRFVKLEPVFRC  170 (568)
Q Consensus        93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~--~~~~~~l~~~~~~~~~~~~~v~~~~~~~~  170 (568)
                      ..+.+|.+ .|++++|+|++          ++||+|+.|++|+|||+..  .+++..+                      
T Consensus         3 ~~~~~h~~-~V~~~~~s~~g----------~~las~s~D~~v~iw~~~~~~~~~~~~l----------------------   49 (297)
T 2pm7_B            3 VIANAHNE-MIHDAVMDYYG----------KRMATCSSDKTIKIFEVEGETHKLIDTL----------------------   49 (297)
T ss_dssp             EECCSCSS-CEEEEEECTTS----------SEEEEEETTSCEEEEEBCSSCBCCCEEE----------------------
T ss_pred             eeccCCcC-ceEEEEECCCC----------CEEEEEeCCCEEEEEecCCCCcEEEEEE----------------------
Confidence            34568988 56699999999          8999999999999999975  2444444                      


Q ss_pred             cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC--CCCCCCCc
Q 008363          171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA--ESDSDSAN  248 (568)
Q Consensus       171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~--~~~~~~~~  248 (568)
                          .+|...| ++++|++..++.+|++|+.||+|+|||+.++..    ..+..+.+|...|.+++|+|+  +      .
T Consensus        50 ----~gH~~~V-~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~----~~~~~~~~h~~~v~~v~~~p~~~g------~  114 (297)
T 2pm7_B           50 ----TGHEGPV-WRVDWAHPKFGTILASCSYDGKVMIWKEENGRW----SQIAVHAVHSASVNSVQWAPHEYG------P  114 (297)
T ss_dssp             ----CCCSSCE-EEEEECCGGGCSEEEEEETTTEEEEEEBSSSCB----CCCEEECCCSSCEEEEEECCGGGC------S
T ss_pred             ----ccccCCe-EEEEecCCCcCCEEEEEcCCCEEEEEEcCCCce----EEEEEeecCCCceeEEEeCcCCCC------c
Confidence                7899999 999998333478999999999999999986522    456778899999999999997  6      7


Q ss_pred             EEEEEcCCC-EEEEECCCCCc-ceeeeCCCCCCeEEEEEcCC-------------CCEEEEEeCCCcEEEEEccccccCC
Q 008363          249 VILTAGHGG-LKFWDIRDPFR-PLWDIHPAPKFIYGLDWLPD-------------PGCVILSFDDGAMRIVSLLKAAYDV  313 (568)
Q Consensus       249 ~las~s~d~-v~lwD~~~~~~-~~~~~~~h~~~i~~l~~sp~-------------~~~l~s~~~dg~I~lwd~~~~~~~~  313 (568)
                      +|++++.|+ |++||++.... ....+.+|...|++++|+|+             +++|++|+.|++|+|||++.     
T Consensus       115 ~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~-----  189 (297)
T 2pm7_B          115 MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS-----  189 (297)
T ss_dssp             EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEET-----
T ss_pred             EEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC-----
Confidence            999999999 99999987632 24567799999999999997             57999999999999999954     


Q ss_pred             CCCCCCccCccccceEEEecCCCCEEEEEEecCC---CEEEEEeCCCeEEEEEcCCCee--e-ccCC-CCCcceeeeecc
Q 008363          314 PATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT---GMVAYCSADGTVHRFQLTAKAV--E-KDHS-RNRPMHFLCGSV  386 (568)
Q Consensus       314 ~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~---~~l~s~s~Dg~v~iwd~~~~~~--~-~~~~-~~~~~~~~~~s~  386 (568)
                         ++..    ...+..+.+|...|++++|+|++   .+|++++.|++|+|||+.+...  . .... ........+.++
T Consensus       190 ---~~~~----~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~  262 (297)
T 2pm7_B          190 ---DAQT----YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW  262 (297)
T ss_dssp             ---TTTE----EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEE
T ss_pred             ---CCce----EEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEE
Confidence               2210    02346788999999999999984   8999999999999999976421  1 1110 111223456688


Q ss_pred             cCCCCceEEcccCCCCCc
Q 008363          387 TEDESAITVNTPLDNTPV  404 (568)
Q Consensus       387 ~~~~~~i~~~~~~~~~~~  404 (568)
                      ++++..|+++.....+.+
T Consensus       263 s~~g~~las~~~D~~v~l  280 (297)
T 2pm7_B          263 SLSGNVLALSGGDNKVTL  280 (297)
T ss_dssp             CSSSCCEEEEETTSCEEE
T ss_pred             CCCCCEEEEEcCCCcEEE
Confidence            899988888776655543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.3e-31  Score=270.00  Aligned_cols=204  Identities=13%  Similarity=0.186  Sum_probs=174.5

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      ..+|.+ .|++|+|+|++          .+|++|+.||+|+|||+.+++++..+                          
T Consensus       123 ~~~H~~-~V~~v~~spdg----------~~l~sgs~d~~i~iwd~~~~~~~~~~--------------------------  165 (344)
T 4gqb_B          123 KYEHDD-IVSTVSVLSSG----------TQAVSGSKDICIKVWDLAQQVVLSSY--------------------------  165 (344)
T ss_dssp             EECCSS-CEEEEEECTTS----------SEEEEEETTSCEEEEETTTTEEEEEE--------------------------
T ss_pred             ccCCCC-CEEEEEECCCC----------CEEEEEeCCCeEEEEECCCCcEEEEE--------------------------
Confidence            458988 56699999999          89999999999999999999888777                          


Q ss_pred             cCCcCccceEEEEccCCCC-CEEEEEeCCCeEEEEEccCCCCCCCCceeEEe--eCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363          175 CGGTQSIPLTMEWSTSPPH-DYLLAGCHDGTVALWKFVASDSSIDSRPLLCF--SADTLPIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~--~~h~~~V~~v~~~p~~~~~~~~~~la  251 (568)
                      .+|...| ++++|+  +++ .+|++|+.||+|+|||++++      ++...+  ..|...+.+++|+|.+     ..+|+
T Consensus       166 ~~h~~~V-~~~~~~--~~~~~~l~s~s~D~~v~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~p~~-----~~~l~  231 (344)
T 4gqb_B          166 RAHAAQV-TCVAAS--PHKDSVFLSCSEDNRILLWDTRCP------KPASQIGCSAPGYLPTSLAWHPQQ-----SEVFV  231 (344)
T ss_dssp             CCCSSCE-EEEEEC--SSCTTEEEEEETTSCEEEEETTSS------SCEEECC----CCCEEEEEECSSC-----TTEEE
T ss_pred             cCcCCce-EEEEec--CCCCCceeeecccccccccccccc------ceeeeeecceeeccceeeeecCCC-----CcceE
Confidence            8899999 999999  655 48899999999999999977      555555  3466679999999976     27999


Q ss_pred             EEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363          252 TAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDP-GCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH  329 (568)
Q Consensus       252 s~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~-~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~  329 (568)
                      +|+.|+ |+|||++++ .++..+.+|...|++++|+|++ ++|++++.|++|+|||++.        +++         .
T Consensus       232 sg~~dg~v~~wd~~~~-~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~--------~~~---------~  293 (344)
T 4gqb_B          232 FGDENGTVSLVDTKST-SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL--------SEL---------F  293 (344)
T ss_dssp             EEETTSEEEEEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC--------CEE---------E
T ss_pred             EeccCCcEEEEECCCC-cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC--------CcE---------E
Confidence            999999 999999987 8888999999999999999998 5789999999999999953        432         4


Q ss_pred             EEecCCCCEEEEEEecCCC-EEEEEeCCCeEEEEEcCCC
Q 008363          330 LVNCSSFAIWSVQVSRLTG-MVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       330 ~~~~h~~~V~~l~~sp~~~-~l~s~s~Dg~v~iwd~~~~  367 (568)
                      .+.+|...|++++|+|++. +|+++|.||+|++|++.+.
T Consensus       294 ~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          294 RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            6789999999999999985 6789999999999999654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.1e-30  Score=264.59  Aligned_cols=230  Identities=13%  Similarity=0.155  Sum_probs=196.4

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc----eeeEEeccCC-------------
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR----TMKAIYLSSM-------------  153 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~----~~~~l~~~~~-------------  153 (568)
                      .+.....|.. .+.+++|+|++          .+|++|+.|+.|+||++.+..    ....+.+|..             
T Consensus        89 ~~~~~~~~~~-~v~~~~~s~~~----------~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l  157 (340)
T 1got_B           89 KVHAIPLRSS-WVMTCAYAPSG----------NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQI  157 (340)
T ss_dssp             EEEEEECSSS-CEEEEEECTTS----------SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEE
T ss_pred             cceEeecCCc-cEEEEEECCCC----------CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcE
Confidence            3445567877 55599999999          899999999999999998742    3444545443             


Q ss_pred             ccCCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCC
Q 008363          154 KEGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLP  231 (568)
Q Consensus       154 ~~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~  231 (568)
                      +.++.++.+++|+..+  +...+.+|...| .+++|+  |++.+|++|+.||+|++||++++      .++..+.+|...
T Consensus       158 ~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v-~~~~~~--~~~~~l~sg~~d~~v~~wd~~~~------~~~~~~~~h~~~  228 (340)
T 1got_B          158 VTSSGDTTCALWDIETGQQTTTFTGHTGDV-MSLSLA--PDTRLFVSGACDASAKLWDVREG------MCRQTFTGHESD  228 (340)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCE-EEEEEC--TTSSEEEEEETTSCEEEEETTTC------SEEEEECCCSSC
T ss_pred             EEEECCCcEEEEECCCCcEEEEEcCCCCce-EEEEEC--CCCCEEEEEeCCCcEEEEECCCC------eeEEEEcCCcCC
Confidence            4567889999999865  555678999999 999999  88999999999999999999876      788899999999


Q ss_pred             eeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeC--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363          232 IRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIH--PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK  308 (568)
Q Consensus       232 V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~--~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~  308 (568)
                      |.+++|+|++      .+|++|+.|+ |++||++.. ..+..+.  .+...|++++|+|++++|++|+.|+.|++||+..
T Consensus       229 v~~v~~~p~~------~~l~s~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~  301 (340)
T 1got_B          229 INAICFFPNG------NAFATGSDDATCRLFDLRAD-QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             EEEEEECTTS------SEEEEEETTSCEEEEETTTT-EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEEEEEcCCC------CEEEEEcCCCcEEEEECCCC-cEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEccc
Confidence            9999999999      8999999999 999999976 5555543  3345799999999999999999999999999953


Q ss_pred             cccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363          309 AAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQ  363 (568)
Q Consensus       309 ~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd  363 (568)
                              ++        .+..+.+|...|++++|+|++.+|++|+.||.|+|||
T Consensus       302 --------~~--------~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          302 --------AD--------RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             --------CC--------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             --------Cc--------EeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence                    32        3468899999999999999999999999999999996

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-31  Score=281.88  Aligned_cols=219  Identities=20%  Similarity=0.228  Sum_probs=169.2

Q ss_pred             ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363           97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG  176 (568)
Q Consensus        97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~  176 (568)
                      .|.+ .|++|+|+|++.    ......+||+++.||+|+|||+.++.......            .   ........+.+
T Consensus       205 ~~~~-~V~~v~wsp~~~----~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~------------~---~~~~p~~~l~~  264 (524)
T 2j04_B          205 HSFG-EVWDLKWHEGCH----APHLVGCLSFVSQEGTINFLEIIDNATDVHVF------------K---MCEKPSLTLSL  264 (524)
T ss_dssp             ECCC-SEEEEEECSSCC----CSSSSCEEEEEETTSCEEEEECCCCSSSSSEE------------E---CCCSCSEEECC
T ss_pred             ecCC-cEEEEEECCCCC----CCCCCceEEEEecCCeEEEEEcCCCccccccc------------e---eecCceEEEEc
Confidence            4455 677999999720    00011699999999999999998754321000            0   00000112378


Q ss_pred             CcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEE--EEccCCCCCCCCcEEEEEc
Q 008363          177 GTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAV--SWAPAESDSDSANVILTAG  254 (568)
Q Consensus       177 h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v--~~~p~~~~~~~~~~las~s  254 (568)
                      |...| ++++|+  ++ ..|++|+.||+|++||+.++     ..+...+.+|...|.+|  +|+|++     +.+||||+
T Consensus       265 h~~~v-~sv~~s--~~-~~lasgs~DgtV~lWD~~~~-----~~~~~~~~~H~~~V~sv~~~~s~~g-----~~~laS~S  330 (524)
T 2j04_B          265 ADSLI-TTFDFL--SP-TTVVCGFKNGFVAEFDLTDP-----EVPSFYDQVHDSYILSVSTAYSDFE-----DTVVSTVA  330 (524)
T ss_dssp             TTTCE-EEEEES--SS-SEEEEEETTSEEEEEETTBC-----SSCSEEEECSSSCEEEEEEECCTTS-----CCEEEEEE
T ss_pred             CCCCE-EEEEec--CC-CeEEEEeCCCEEEEEECCCC-----CCceEEeecccccEEEEEEEcCCCC-----CeEEEEec
Confidence            88999 999999  55 48999999999999999865     13556788999999999  466764     16999999


Q ss_pred             CCC-EEEEECCCCCcceeeeCCCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363          255 HGG-LKFWDIRDPFRPLWDIHPAPK--FIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV  331 (568)
Q Consensus       255 ~d~-v~lwD~~~~~~~~~~~~~h~~--~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~  331 (568)
                      .|+ |+|||+++. .++..+.+|..  .|.+++|+|++..|++++.|++|++||++.        +.+        +..+
T Consensus       331 ~D~tvklWD~~~~-~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~--------~~~--------~~~l  393 (524)
T 2j04_B          331 VDGYFYIFNPKDI-ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA--------AFA--------VHPL  393 (524)
T ss_dssp             TTSEEEEECGGGH-HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC--------TTC--------CEEE
T ss_pred             cCCeEEEEECCCC-CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc--------ccc--------ceee
Confidence            999 999999976 55555555543  578999999999999999999999999964        332        3578


Q ss_pred             ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          332 NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       332 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                      .+|...|++|+|+|++++|++|+.||+|++||+..
T Consensus       394 ~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          394 VSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             EECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             ecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence            89999999999999999999999999999999854

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.3e-30  Score=259.93  Aligned_cols=237  Identities=14%  Similarity=0.140  Sum_probs=194.9

Q ss_pred             EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363           94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML  173 (568)
Q Consensus        94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~  173 (568)
                      .+.+|.+ .|++++|+|+++         .+|++|+.|++|++|++........                 .    ....
T Consensus        12 ~l~gH~~-~V~~l~~~~~~~---------~~l~s~s~D~~v~~W~~~~~~~~~~-----------------~----~~~~   60 (319)
T 3frx_A           12 TLEGHNG-WVTSLATSAGQP---------NLLLSASRDKTLISWKLTGDDQKFG-----------------V----PVRS   60 (319)
T ss_dssp             EECCCSS-CEEEEEECSSCT---------TEEEEEETTSEEEEEEEEEETTEEE-----------------E----EEEE
T ss_pred             EEccccc-eEEEEEccCCCc---------cEEEEecCCccEEEecCCCCCcccc-----------------c----cceE
Confidence            3568999 555999999765         7999999999999999865221100                 0    0112


Q ss_pred             ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363          174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA  253 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~  253 (568)
                      +.+|...| .+++|+  +++.+|++|+.||+|+|||+.++      +++..+.+|...|.+++|+|++      .+|+++
T Consensus        61 ~~~h~~~v-~~~~~s--~dg~~l~s~s~D~~v~~wd~~~~------~~~~~~~~h~~~v~~~~~~~~~------~~l~s~  125 (319)
T 3frx_A           61 FKGHSHIV-QDCTLT--ADGAYALSASWDKTLRLWDVATG------ETYQRFVGHKSDVMSVDIDKKA------SMIISG  125 (319)
T ss_dssp             EECCSSCE-EEEEEC--TTSSEEEEEETTSEEEEEETTTT------EEEEEEECCSSCEEEEEECTTS------CEEEEE
T ss_pred             EeCCcccE-EEEEEC--CCCCEEEEEeCCCEEEEEECCCC------CeeEEEccCCCcEEEEEEcCCC------CEEEEE
Confidence            27899999 999999  88999999999999999999977      8888999999999999999998      899999


Q ss_pred             cCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCC------CCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcccc
Q 008363          254 GHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPD------PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQ  326 (568)
Q Consensus       254 s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~------~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~  326 (568)
                      +.|+ |++||++.  .++..+.+|...|.+++|+|.      +..|++++.|+.|++||++.        +        +
T Consensus       126 s~D~~i~vwd~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~--------~--------~  187 (319)
T 3frx_A          126 SRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ--------F--------Q  187 (319)
T ss_dssp             ETTSCEEEEETTS--CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT--------T--------E
T ss_pred             eCCCeEEEEECCC--CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc--------c--------h
Confidence            9999 99999974  567788899999999999995      45899999999999999954        2        2


Q ss_pred             ceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEc
Q 008363          327 GLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVN  396 (568)
Q Consensus       327 ~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~  396 (568)
                      ....+.+|...|++++|+|++.+|++++.||.|++||+.++........+  ..+.+.++++++..++.+
T Consensus       188 ~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~la~~  255 (319)
T 3frx_A          188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAA  255 (319)
T ss_dssp             EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC--SCEEEEEECSSSSEEEEE
T ss_pred             hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CcEEEEEEcCCCCEEEEE
Confidence            34578899999999999999999999999999999999887665443322  234455677777666544

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.98  E-value=1.2e-29  Score=253.32  Aligned_cols=213  Identities=17%  Similarity=0.283  Sum_probs=188.7

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS  171 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~  171 (568)
                      ...+.+|.+ .|.+++|+|++          .+|++|+.||.|+||++.+++....+                       
T Consensus        16 ~~~~~gh~~-~v~~~~~s~~~----------~~l~s~~~dg~i~iw~~~~~~~~~~~-----------------------   61 (312)
T 4ery_A           16 KFTLAGHTK-AVSSVKFSPNG----------EWLASSSADKLIKIWGAYDGKFEKTI-----------------------   61 (312)
T ss_dssp             EEEECCCSS-CEEEEEECTTS----------SEEEEEETTSCEEEEETTTCCEEEEE-----------------------
T ss_pred             EEEEcccCC-cEEEEEECCCC----------CEEEEeeCCCeEEEEeCCCcccchhh-----------------------
Confidence            444678988 55599999999          79999999999999999998877666                       


Q ss_pred             ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363          172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la  251 (568)
                         .+|...| .+++|+  |++++|++|+.||.|++||+.++      .++..+.+|...|.+++|+|++      .+|+
T Consensus        62 ---~~h~~~v-~~~~~~--~~~~~l~s~~~d~~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~------~~l~  123 (312)
T 4ery_A           62 ---SGHKLGI-SDVAWS--SDSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNPQS------NLIV  123 (312)
T ss_dssp             ---CCCSSCE-EEEEEC--TTSSEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEECSSS------SEEE
T ss_pred             ---ccCCCce-EEEEEc--CCCCEEEEECCCCEEEEEECCCC------cEEEEEcCCCCCEEEEEEcCCC------CEEE
Confidence               7888899 999999  88999999999999999999876      7888999999999999999998      8999


Q ss_pred             EEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363          252 TAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL  330 (568)
Q Consensus       252 s~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~  330 (568)
                      +++.|+ |++||+++. ..+..+..|...|.+++|+|++.+|++++.||.|++||++.        ++.        +..
T Consensus       124 s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~--------~~~--------~~~  186 (312)
T 4ery_A          124 SGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS--------GQC--------LKT  186 (312)
T ss_dssp             EEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------CCE--------EEE
T ss_pred             EEeCCCcEEEEECCCC-EEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC--------Cce--------eeE
Confidence            999999 999999987 77888889999999999999999999999999999999954        333        233


Q ss_pred             E-ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccC
Q 008363          331 V-NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDH  373 (568)
Q Consensus       331 ~-~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~  373 (568)
                      + ..+...+..++|+|++.+|++++.||.|++||+.++......
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  230 (312)
T 4ery_A          187 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY  230 (312)
T ss_dssp             ECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE
T ss_pred             EeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence            3 456678999999999999999999999999999887765543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.98  E-value=6.6e-30  Score=279.84  Aligned_cols=271  Identities=14%  Similarity=0.155  Sum_probs=205.7

Q ss_pred             EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc--eeeEEeccCC--------------ccC
Q 008363           93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR--TMKAIYLSSM--------------KEG  156 (568)
Q Consensus        93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~--~~~~l~~~~~--------------~~~  156 (568)
                      ..+.+|.+ .|++++|+|++          .+||+|+.||+|+|||+.+++  ....+.+|..              +.+
T Consensus        53 ~~~~~h~~-~v~~~~~spdg----------~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~  121 (611)
T 1nr0_A           53 EIYTEHSH-QTTVAKTSPSG----------YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAV  121 (611)
T ss_dssp             EEECCCSS-CEEEEEECTTS----------SEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEE
T ss_pred             eEecCCCC-ceEEEEECCCC----------cEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEE
Confidence            34568998 45599999999          899999999999999997543  3344444433              111


Q ss_pred             CC----CceEEEeecceecccccCCcCccceEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCC
Q 008363          157 TD----PRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLP  231 (568)
Q Consensus       157 ~~----~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~  231 (568)
                      +.    ...+.+|+...+...+.+|...| ++++|+  |++. +|++|+.|++|++||....      +++..+.+|...
T Consensus       122 ~~~~~~~~~v~~wd~~~~~~~l~gh~~~v-~~v~f~--p~~~~~l~s~s~D~~v~lwd~~~~------~~~~~l~~H~~~  192 (611)
T 1nr0_A          122 GEGRERFGHVFLFDTGTSNGNLTGQARAM-NSVDFK--PSRPFRIISGSDDNTVAIFEGPPF------KFKSTFGEHTKF  192 (611)
T ss_dssp             ECCSSCSEEEEETTTCCBCBCCCCCSSCE-EEEEEC--SSSSCEEEEEETTSCEEEEETTTB------EEEEEECCCSSC
T ss_pred             ECCCCceeEEEEeeCCCCcceecCCCCCc-eEEEEC--CCCCeEEEEEeCCCeEEEEECCCC------eEeeeeccccCc
Confidence            11    24678888766777788999999 999999  7765 6999999999999998755      788899999999


Q ss_pred             eeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeC-------CCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 008363          232 IRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIH-------PAPKFIYGLDWLPDPGCVILSFDDGAMRI  303 (568)
Q Consensus       232 V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~-------~h~~~i~~l~~sp~~~~l~s~~~dg~I~l  303 (568)
                      |.+++|+|++      .+||+++.|+ |++||+.++ .++..+.       +|.+.|++++|+|++++|++++.|++|+|
T Consensus       193 V~~v~fspdg------~~las~s~D~~i~lwd~~~g-~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~l  265 (611)
T 1nr0_A          193 VHSVRYNPDG------SLFASTGGDGTIVLYNGVDG-TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKI  265 (611)
T ss_dssp             EEEEEECTTS------SEEEEEETTSCEEEEETTTC-CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             eEEEEECCCC------CEEEEEECCCcEEEEECCCC-cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence            9999999999      8999999999 999999877 5565553       79999999999999999999999999999


Q ss_pred             EEccccccCCCC-CCCCcc--------------------------CccccceEEEecCCCCEEEEEEecCCCEEEEEeCC
Q 008363          304 VSLLKAAYDVPA-TGKPFA--------------------------GTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD  356 (568)
Q Consensus       304 wd~~~~~~~~~~-~g~~~~--------------------------~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D  356 (568)
                      ||++....-... .+....                          .....++..+.+|...|++++|+|++++|++++.|
T Consensus       266 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D  345 (611)
T 1nr0_A          266 WNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAE  345 (611)
T ss_dssp             EETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence            998642100000 000000                          00011345667899999999999999999999999


Q ss_pred             CeEEEEEcCCCeeeccCCCCCcceeeeecccCCC
Q 008363          357 GTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDE  390 (568)
Q Consensus       357 g~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~  390 (568)
                      ++|++||+.++.............+.+..++.++
T Consensus       346 ~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~  379 (611)
T 1nr0_A          346 GHINSWDISTGISNRVFPDVHATMITGIKTTSKG  379 (611)
T ss_dssp             SCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS
T ss_pred             CcEEEEECCCCceeeecccCCcceEEEEEECCCC
Confidence            9999999988766543222222233444555443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.97  E-value=2.5e-30  Score=264.02  Aligned_cols=263  Identities=18%  Similarity=0.216  Sum_probs=204.5

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeC------CCcEEEEECCCCceee----EEeccCC------------
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLG------NGSLEVWEVPLLRTMK----AIYLSSM------------  153 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~------dg~V~iwd~~~~~~~~----~l~~~~~------------  153 (568)
                      .+|.+ .|.+|+|+|+|          .+||+|+.      |+.|++|+..++....    ...++..            
T Consensus        39 ~~H~~-~V~~v~fSpDG----------~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~  107 (357)
T 4g56_B           39 ACMEV-QIGAVRYRRDG----------ALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG  107 (357)
T ss_dssp             -CCCS-EEEEEEECSSS----------CEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE
T ss_pred             ccccC-CEEEEEECCCC----------CEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC
Confidence            46888 56699999999          89999998      7889999987753221    1122221            


Q ss_pred             -ccCCCCceEEEeecceec------ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee
Q 008363          154 -KEGTDPRFVKLEPVFRCS------MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS  226 (568)
Q Consensus       154 -~~~~~~~~v~~~~~~~~~------~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~  226 (568)
                       +.++.++.|++|++.+..      ....+|...| ++|+|+  |++.+|++|+.||+|+|||+.++      .++..+.
T Consensus       108 ~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V-~~v~~s--pdg~~l~sgs~dg~v~iwd~~~~------~~~~~~~  178 (357)
T 4g56_B          108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIV-KTLSVF--SDGTQAVSGGKDFSVKVWDLSQK------AVLKSYN  178 (357)
T ss_dssp             EEEEETTSCEEEC--------CCCCEEECCCSSCE-EEEEEC--SSSSEEEEEETTSCEEEEETTTT------EEEEEEC
T ss_pred             EEEEECCCEEEEeeccccceeEEEeeccCCCCCCE-EEEEEC--CCCCEEEEEeCCCeEEEEECCCC------cEEEEEc
Confidence             456678899999876521      1234899999 999999  88999999999999999999977      8889999


Q ss_pred             CCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCccee--eeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEE
Q 008363          227 ADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLW--DIHPAPKFIYGLDWLPDP-GCVILSFDDGAMR  302 (568)
Q Consensus       227 ~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~--~~~~h~~~i~~l~~sp~~-~~l~s~~~dg~I~  302 (568)
                      +|...|++++|++++     ..+|++++.|+ |++||++++ .++.  .+..|...+++++|+|++ .+|++|+.|+.|+
T Consensus       179 ~h~~~v~~v~~s~~~-----~~~~~s~~~dg~v~~wd~~~~-~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~  252 (357)
T 4g56_B          179 AHSSEVNCVAACPGK-----DTIFLSCGEDGRILLWDTRKP-KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVS  252 (357)
T ss_dssp             CCSSCEEEEEECTTC-----SSCEEEEETTSCEEECCTTSS-SCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEE
T ss_pred             CCCCCEEEEEEccCC-----CceeeeeccCCceEEEECCCC-ceeeeeeeccccccccchhhhhcccceEEEeeccccee
Confidence            999999999999987     25899999998 999999987 4443  344677889999999975 6788899999999


Q ss_pred             EEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCCCeeeccCCCCCccee
Q 008363          303 IVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHF  381 (568)
Q Consensus       303 lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~  381 (568)
                      +||++.        ++        ++..+.+|...|++++|+|++ .+|++++.||+|+|||+.+++..+.. .+. ..+
T Consensus       253 ~wd~~~--------~~--------~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~-~~V  314 (357)
T 4g56_B          253 LVNIKN--------PD--------SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHR-DFV  314 (357)
T ss_dssp             EEESSC--------GG--------GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCS-SCE
T ss_pred             EEECCC--------Cc--------EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCC-CCE
Confidence            999954        43        346889999999999999997 68999999999999999988776543 222 234


Q ss_pred             eeecccC-CCCceEEcccCCCC
Q 008363          382 LCGSVTE-DESAITVNTPLDNT  402 (568)
Q Consensus       382 ~~~s~~~-~~~~i~~~~~~~~~  402 (568)
                      .+.++++ ++..|+.++....+
T Consensus       315 ~~vafsP~d~~~l~s~s~Dg~v  336 (357)
T 4g56_B          315 TGVAWSPLDHSKFTTVGWDHKV  336 (357)
T ss_dssp             EEEEECSSSTTEEEEEETTSCE
T ss_pred             EEEEEeCCCCCEEEEEcCCCeE
Confidence            5667886 67777777665555

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.9e-30  Score=256.55  Aligned_cols=278  Identities=12%  Similarity=0.119  Sum_probs=203.8

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC--ceeeEE-ec-cCC--------------
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL--RTMKAI-YL-SSM--------------  153 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~--~~~~~l-~~-~~~--------------  153 (568)
                      +..+.+|.+ .|++++|+|+            +||+|+.||+|+|||+..+  .....+ .. |..              
T Consensus         7 ~~~~~~h~~-~v~~~~~s~~------------~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l   73 (330)
T 2hes_X            7 IKSLKLYKE-KIWSFDFSQG------------ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLL   73 (330)
T ss_dssp             EEEEECCSS-CEEEEEEETT------------EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEE
T ss_pred             ceeeccCCC-ceeeeccCCC------------EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEE
Confidence            445678998 6669999864            7999999999999999874  344444 22 332              


Q ss_pred             ccCCCCceEEEeecc---------eecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEE
Q 008363          154 KEGTDPRFVKLEPVF---------RCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLC  224 (568)
Q Consensus       154 ~~~~~~~~v~~~~~~---------~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~  224 (568)
                      +.++.++.+++|+..         .+...+.+|...| ++++|+  |++.+|++|+.||+|+|||+.....  ...++..
T Consensus        74 as~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V-~~v~~s--p~g~~las~s~D~~v~iwd~~~~~~--~~~~~~~  148 (330)
T 2hes_X           74 AAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEV-KGVAWS--NDGYYLATCSRDKSVWIWETDESGE--EYECISV  148 (330)
T ss_dssp             EEEETTSCEEEEEC-------CCCEEEEEEC----CE-EEEEEC--TTSCEEEEEETTSCEEEEECCTTCC--CCEEEEE
T ss_pred             EEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcE-EEEEEC--CCCCEEEEEeCCCEEEEEeccCCCC--CeEEEEE
Confidence            567789999999873         2445567999999 999999  8899999999999999999953211  1356778


Q ss_pred             eeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCC-cceeeeCCCCCCeEEEEEcCC--CCEEEEEeCCCc
Q 008363          225 FSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPD--PGCVILSFDDGA  300 (568)
Q Consensus       225 ~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~--~~~l~s~~~dg~  300 (568)
                      +.+|...|.+++|+|++      .+|++++.|+ |++||++... .++..+.+|.+.|.+++|+|+  +.+|++++.|++
T Consensus       149 ~~~h~~~v~~v~~~p~~------~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~  222 (330)
T 2hes_X          149 LQEHSQDVKHVIWHPSE------ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST  222 (330)
T ss_dssp             ECCCSSCEEEEEECSSS------SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC
T ss_pred             eccCCCceEEEEECCCC------CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe
Confidence            89999999999999998      8999999999 9999987642 467888999999999999998  778999999999


Q ss_pred             EEEEEccccccCCCCCCCCccCccccceEEEec-CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec---cCCCC
Q 008363          301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC-SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK---DHSRN  376 (568)
Q Consensus       301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~-h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~---~~~~~  376 (568)
                      |++||++.....    +.    ....++..+.+ |...|++++|++++ +|++++.||.|++|++.++....   ....+
T Consensus       223 v~iw~~~~~~~~----~~----~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h  293 (330)
T 2hes_X          223 VRVWKYMGDDED----DQ----QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCH  293 (330)
T ss_dssp             EEEEEEEEECTT----SC----EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTT
T ss_pred             EEEEEecCCCcc----cc----ceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccc
Confidence            999999642210    00    00122344544 89999999999654 89999999999999997764211   11122


Q ss_pred             CcceeeeecccC--CCCceEEcccCCCC
Q 008363          377 RPMHFLCGSVTE--DESAITVNTPLDNT  402 (568)
Q Consensus       377 ~~~~~~~~s~~~--~~~~i~~~~~~~~~  402 (568)
                      ....+.+.++++  ++..|+.++....+
T Consensus       294 ~~~~v~~v~~~~~~~~~~las~s~Dg~v  321 (330)
T 2hes_X          294 GVYEINVVKWLELNGKTILATGGDDGIV  321 (330)
T ss_dssp             TTSCEEEEEEC-----CCEEEEETTSEE
T ss_pred             ccceEEEEEEecCCCceEEEEecCCCcE
Confidence            222344556666  56667666555444

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.97  E-value=6.6e-30  Score=260.50  Aligned_cols=205  Identities=13%  Similarity=0.225  Sum_probs=181.0

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS  171 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~  171 (568)
                      .....+|.+ .+.+++|+|++          ..|++++.||+|+|||+.+++++..+                       
T Consensus       147 ~~~~~~h~~-~v~~~~~~~~~----------~~l~t~s~D~~v~lwd~~~~~~~~~~-----------------------  192 (354)
T 2pbi_B          147 KKSVAMHTN-YLSACSFTNSD----------MQILTASGDGTCALWDVESGQLLQSF-----------------------  192 (354)
T ss_dssp             CEEEEECSS-CEEEEEECSSS----------SEEEEEETTSEEEEEETTTCCEEEEE-----------------------
T ss_pred             ceeeeccCC-cEEEEEEeCCC----------CEEEEEeCCCcEEEEeCCCCeEEEEE-----------------------
Confidence            334567888 55699999999          79999999999999999999888776                       


Q ss_pred             ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363          172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la  251 (568)
                         .+|...| .+++|+|.+++.+|++|+.||+|++||++++      .++..+.+|...|.+++|+|++      .+|+
T Consensus       193 ---~~h~~~v-~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~------~~~~~~~~h~~~v~~v~~~p~~------~~l~  256 (354)
T 2pbi_B          193 ---HGHGADV-LCLDLAPSETGNTFVSGGCDKKAMVWDMRSG------QCVQAFETHESDVNSVRYYPSG------DAFA  256 (354)
T ss_dssp             ---ECCSSCE-EEEEECCCSSCCEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTS------SEEE
T ss_pred             ---cCCCCCe-EEEEEEeCCCCCEEEEEeCCCeEEEEECCCC------cEEEEecCCCCCeEEEEEeCCC------CEEE
Confidence               7888888 9999997767889999999999999999977      7888999999999999999998      8999


Q ss_pred             EEcCCC-EEEEECCCCCcceeeeCC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363          252 TAGHGG-LKFWDIRDPFRPLWDIHP--APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       252 s~s~d~-v~lwD~~~~~~~~~~~~~--h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                      +++.|+ |++||++.. ..+..+..  +...+++++|+|++++|++++.|+.|++||++.        ++.        +
T Consensus       257 s~s~D~~v~lwd~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~--------~~~--------~  319 (354)
T 2pbi_B          257 SGSDDATCRLYDLRAD-REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLK--------GSR--------V  319 (354)
T ss_dssp             EEETTSCEEEEETTTT-EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------CSE--------E
T ss_pred             EEeCCCeEEEEECCCC-cEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCC--------Cce--------E
Confidence            999999 999999976 55555543  345789999999999999999999999999943        433        4


Q ss_pred             EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363          329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQ  363 (568)
Q Consensus       329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd  363 (568)
                      ..+.+|...|++++|+|++.+|++|+.||+|+||+
T Consensus       320 ~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          320 SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            68889999999999999999999999999999995

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.97  E-value=2.2e-29  Score=255.43  Aligned_cols=211  Identities=12%  Similarity=0.120  Sum_probs=175.5

Q ss_pred             EEEeeccCCceeeEEEE-----cc-CCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEe
Q 008363           92 VVLCLAHNGKVAWDVKW-----KP-YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLE  165 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~-----sp-~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~  165 (568)
                      ...+.+|.+ .|++++|     ++ ++          .+|++|+.|++|+|||+.........                 
T Consensus        14 ~~~l~gH~~-~V~~~~~~~s~~~~~d~----------~~l~sgs~D~~v~iWd~~~~~~~~~~-----------------   65 (343)
T 2xzm_R           14 RGILEGHSD-WVTSIVAGFSQKENEDS----------PVLISGSRDKTVMIWKLYEEEQNGYF-----------------   65 (343)
T ss_dssp             EEEEECCSS-CEEEEEECCCSSTTCCC----------CEEEEEETTSCEEEEEECSSCCSSBS-----------------
T ss_pred             eeeeccchh-hhhheeeEEEeecCCCC----------CEEEEEcCCCEEEEEECCcCCccccc-----------------
Confidence            334678999 5669999     66 66          79999999999999999763311000                 


Q ss_pred             ecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCC
Q 008363          166 PVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSD  245 (568)
Q Consensus       166 ~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~  245 (568)
                        ......+.+|...| .+++|+  |++.+|++|+.||+|+|||+.++      .++..+.+|...|.+++|+|++    
T Consensus        66 --~~~~~~l~~h~~~V-~~~~~~--~~~~~l~s~s~D~~v~lwd~~~~------~~~~~~~~h~~~v~~v~~sp~~----  130 (343)
T 2xzm_R           66 --GIPHKALTGHNHFV-SDLALS--QENCFAISSSWDKTLRLWDLRTG------TTYKRFVGHQSEVYSVAFSPDN----  130 (343)
T ss_dssp             --EEEEEEECCCSSCE-EEEEEC--SSTTEEEEEETTSEEEEEETTSS------CEEEEEECCCSCEEEEEECSST----
T ss_pred             --ccccchhccCCCce-EEEEEC--CCCCEEEEEcCCCcEEEEECCCC------cEEEEEcCCCCcEEEEEECCCC----
Confidence              00011227899999 999999  88999999999999999999976      7888999999999999999999    


Q ss_pred             CCcEEEEEcCCC-EEEEECCCCCcceeee---CCCCCCeEEEEEcCCC----------CEEEEEeCCCcEEEEEcccccc
Q 008363          246 SANVILTAGHGG-LKFWDIRDPFRPLWDI---HPAPKFIYGLDWLPDP----------GCVILSFDDGAMRIVSLLKAAY  311 (568)
Q Consensus       246 ~~~~las~s~d~-v~lwD~~~~~~~~~~~---~~h~~~i~~l~~sp~~----------~~l~s~~~dg~I~lwd~~~~~~  311 (568)
                        .+|++++.|+ |++||+...  .....   .+|...|.+++|+|++          .+|++++.|+.|++||..    
T Consensus       131 --~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~----  202 (343)
T 2xzm_R          131 --RQILSAGAEREIKLWNILGE--CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN----  202 (343)
T ss_dssp             --TEEEEEETTSCEEEEESSSC--EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT----
T ss_pred             --CEEEEEcCCCEEEEEeccCC--ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC----
Confidence              8999999999 999999843  22222   3788999999999987          789999999999999963    


Q ss_pred             CCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          312 DVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       312 ~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                           +        ..+..+.+|...|++++|+|++.+|++++.||.|++||+..
T Consensus       203 -----~--------~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~  244 (343)
T 2xzm_R          203 -----F--------QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN  244 (343)
T ss_dssp             -----T--------EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred             -----C--------ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence                 2        33467889999999999999999999999999999999943

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=7e-31  Score=263.33  Aligned_cols=252  Identities=12%  Similarity=0.126  Sum_probs=193.2

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCce--eeEEeccCCccCCCCceEEEeecceecc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRT--MKAIYLSSMKEGTDPRFVKLEPVFRCSM  172 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~--~~~l~~~~~~~~~~~~~v~~~~~~~~~~  172 (568)
                      ..+|.+ .|++++|+|++          ++||+|+.|++|+|||+.++..  +..+                        
T Consensus         9 ~~~H~~-~V~~v~~s~~g----------~~lasgs~D~~v~lwd~~~~~~~~~~~l------------------------   53 (316)
T 3bg1_A            9 DTSHED-MIHDAQMDYYG----------TRLATCSSDRSVKIFDVRNGGQILIADL------------------------   53 (316)
T ss_dssp             -----C-CEEEEEECGGG----------CEEEEEETTTEEEEEEEETTEEEEEEEE------------------------
T ss_pred             cccccC-eEEEeeEcCCC----------CEEEEEeCCCeEEEEEecCCCcEEEEEE------------------------
Confidence            358988 56699999999          8999999999999999987542  3333                        


Q ss_pred             cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363          173 LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILT  252 (568)
Q Consensus       173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las  252 (568)
                        .+|...| ++++|++..++.+|++|+.|++|+|||+.++..    ..+..+.+|...|.+++|+|+.    ...+|++
T Consensus        54 --~gH~~~V-~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~----~~~~~~~~h~~~V~~v~~~p~~----~g~~las  122 (316)
T 3bg1_A           54 --RGHEGPV-WQVAWAHPMYGNILASCSYDRKVIIWREENGTW----EKSHEHAGHDSSVNSVCWAPHD----YGLILAC  122 (316)
T ss_dssp             --ECCSSCE-EEEEECCGGGSSCEEEEETTSCEEEECCSSSCC----CEEEEECCCSSCCCEEEECCTT----TCSCEEE
T ss_pred             --cCCCccE-EEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc----eEEEEccCCCCceEEEEECCCC----CCcEEEE
Confidence              7899999 999998322478999999999999999986522    4667788999999999999982    1279999


Q ss_pred             EcCCC-EEEEECCCCCc--ceeeeCCCCCCeEEEEEcCC-----------------CCEEEEEeCCCcEEEEEccccccC
Q 008363          253 AGHGG-LKFWDIRDPFR--PLWDIHPAPKFIYGLDWLPD-----------------PGCVILSFDDGAMRIVSLLKAAYD  312 (568)
Q Consensus       253 ~s~d~-v~lwD~~~~~~--~~~~~~~h~~~i~~l~~sp~-----------------~~~l~s~~~dg~I~lwd~~~~~~~  312 (568)
                      ++.|+ |++||++....  ....+.+|...|.+++|+|+                 +.+|++++.|++|++||++.    
T Consensus       123 gs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~----  198 (316)
T 3bg1_A          123 GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEE----  198 (316)
T ss_dssp             ECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECT----
T ss_pred             EcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCC----
Confidence            99999 99999987532  23556789999999999998                 47899999999999999943    


Q ss_pred             CCCCCCCccCccccceEEEecCCCCEEEEEEecCC----CEEEEEeCCCeEEEEEcCCCee---eccCCCCCcceeeeec
Q 008363          313 VPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT----GMVAYCSADGTVHRFQLTAKAV---EKDHSRNRPMHFLCGS  385 (568)
Q Consensus       313 ~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~----~~l~s~s~Dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~s  385 (568)
                          +...     .++..+.+|...|++++|+|++    .+|++++.||+|+||++.+...   ...........+.+.+
T Consensus       199 ----~~~~-----~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~  269 (316)
T 3bg1_A          199 ----DGQW-----KEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVS  269 (316)
T ss_dssp             ----TSCE-----EEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEE
T ss_pred             ----CCcc-----ceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEE
Confidence                1110     2345778999999999999986    8999999999999999976211   0000000123455668


Q ss_pred             ccCCCCceEEcccCCCCCcc
Q 008363          386 VTEDESAITVNTPLDNTPVP  405 (568)
Q Consensus       386 ~~~~~~~i~~~~~~~~~~~~  405 (568)
                      +++++..|+++.....+.+.
T Consensus       270 ~sp~g~~las~~~D~~v~lw  289 (316)
T 3bg1_A          270 WSITANILAVSGGDNKVTLW  289 (316)
T ss_dssp             ECTTTCCEEEEESSSCEEEE
T ss_pred             EcCCCCEEEEEcCCCeEEEE
Confidence            88999888887766666443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.97  E-value=2.1e-29  Score=260.55  Aligned_cols=276  Identities=17%  Similarity=0.162  Sum_probs=208.0

Q ss_pred             EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccC--------------------
Q 008363           93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSS--------------------  152 (568)
Q Consensus        93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~--------------------  152 (568)
                      ...++|.+ .|++++|+|++          .+||+|+ ++.++||++.+++.+..+..+.                    
T Consensus        58 ~~~~~h~~-~V~~v~fspdg----------~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  125 (393)
T 1erj_A           58 HKSLDHTS-VVCCVKFSNDG----------EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY  125 (393)
T ss_dssp             EEEEECSS-CCCEEEECTTS----------SEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCB
T ss_pred             EEecCCCC-EEEEEEECCCC----------CEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCcee
Confidence            34457988 55599999999          7999876 7899999999887766554321                    


Q ss_pred             ---------C---ccCCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCC
Q 008363          153 ---------M---KEGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSID  218 (568)
Q Consensus       153 ---------~---~~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~  218 (568)
                               .   +.++.++.+++|+...  +...+.+|...| ++++|+  |++.+|++|+.||+|++||+.++     
T Consensus       126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v-~~~~~~--p~~~~l~s~s~d~~v~iwd~~~~-----  197 (393)
T 1erj_A          126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI-YSLDYF--PSGDKLVSGSGDRTVRIWDLRTG-----  197 (393)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE-EEEEEC--TTSSEEEEEETTSEEEEEETTTT-----
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCE-EEEEEc--CCCCEEEEecCCCcEEEEECCCC-----
Confidence                     0   4567889999999865  455678999999 999999  88999999999999999999876     


Q ss_pred             CceeEEeeCCCCCeeEEEEcc-CCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeee-------CCCCCCeEEEEEcCCC
Q 008363          219 SRPLLCFSADTLPIRAVSWAP-AESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDI-------HPAPKFIYGLDWLPDP  289 (568)
Q Consensus       219 ~~~~~~~~~h~~~V~~v~~~p-~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~-------~~h~~~i~~l~~sp~~  289 (568)
                       .+...+. |...+.+++|+| ++      .+|++|+.|+ |++||++++ ..+..+       .+|...|++++|+|++
T Consensus       198 -~~~~~~~-~~~~v~~~~~~~~~~------~~l~~~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~~~~g  268 (393)
T 1erj_A          198 -QCSLTLS-IEDGVTTVAVSPGDG------KYIAAGSLDRAVRVWDSETG-FLVERLDSENESGTGHKDSVYSVVFTRDG  268 (393)
T ss_dssp             -EEEEEEE-CSSCEEEEEECSTTC------CEEEEEETTSCEEEEETTTC-CEEEEEC------CCCSSCEEEEEECTTS
T ss_pred             -eeEEEEE-cCCCcEEEEEECCCC------CEEEEEcCCCcEEEEECCCC-cEEEeecccccCCCCCCCCEEEEEECCCC
Confidence             6666664 567799999999 66      8999999999 999999987 444444       5789999999999999


Q ss_pred             CEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363          290 GCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV  369 (568)
Q Consensus       290 ~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~  369 (568)
                      ++|++++.|++|++||++..........    .....+...+.+|...|.+++|+|++.+|++++.||.|++||+.++..
T Consensus       269 ~~l~s~s~d~~v~~wd~~~~~~~~~~~~----~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~  344 (393)
T 1erj_A          269 QSVVSGSLDRSVKLWNLQNANNKSDSKT----PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP  344 (393)
T ss_dssp             SEEEEEETTSEEEEEEC-------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE
T ss_pred             CEEEEEeCCCEEEEEECCCCCCcccccC----CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE
Confidence            9999999999999999975321100000    000134567889999999999999999999999999999999988765


Q ss_pred             eccCCCCCcceeeeecc------cCCCCceEEcccCCCC
Q 008363          370 EKDHSRNRPMHFLCGSV------TEDESAITVNTPLDNT  402 (568)
Q Consensus       370 ~~~~~~~~~~~~~~~s~------~~~~~~i~~~~~~~~~  402 (568)
                      ......+... ..+..+      .+++..++.++....+
T Consensus       345 ~~~l~~h~~~-v~~v~~~~~~~~~p~~~~l~sgs~Dg~i  382 (393)
T 1erj_A          345 LLMLQGHRNS-VISVAVANGSSLGPEYNVFATGSGDCKA  382 (393)
T ss_dssp             EEEEECCSSC-EEEEEECSSCTTCTTCEEEEEEETTSEE
T ss_pred             EEEECCCCCC-EEEEEecCCcCcCCCCCEEEEECCCCcE
Confidence            5443333322 222222      2345556555544433

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.97  E-value=3.9e-29  Score=250.92  Aligned_cols=246  Identities=16%  Similarity=0.222  Sum_probs=200.8

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS  171 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~  171 (568)
                      +..+.+|.. .|.+++|+|++          .+|++|+.|++|+|||+.+++++..+                       
T Consensus        58 ~~~~~~h~~-~v~~~~~s~dg----------~~l~s~s~D~~v~~wd~~~~~~~~~~-----------------------  103 (319)
T 3frx_A           58 VRSFKGHSH-IVQDCTLTADG----------AYALSASWDKTLRLWDVATGETYQRF-----------------------  103 (319)
T ss_dssp             EEEEECCSS-CEEEEEECTTS----------SEEEEEETTSEEEEEETTTTEEEEEE-----------------------
T ss_pred             ceEEeCCcc-cEEEEEECCCC----------CEEEEEeCCCEEEEEECCCCCeeEEE-----------------------
Confidence            445678998 55599999999          89999999999999999999888776                       


Q ss_pred             ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363          172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la  251 (568)
                         .+|...| .+++|+  +++.+|++|+.||+|++||+..       .++..+.+|...|.++.|.|.........+|+
T Consensus       104 ---~~h~~~v-~~~~~~--~~~~~l~s~s~D~~i~vwd~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~  170 (319)
T 3frx_A          104 ---VGHKSDV-MSVDID--KKASMIISGSRDKTIKVWTIKG-------QCLATLLGHNDWVSQVRVVPNEKADDDSVTII  170 (319)
T ss_dssp             ---ECCSSCE-EEEEEC--TTSCEEEEEETTSCEEEEETTS-------CEEEEECCCSSCEEEEEECCC------CCEEE
T ss_pred             ---ccCCCcE-EEEEEc--CCCCEEEEEeCCCeEEEEECCC-------CeEEEEeccCCcEEEEEEccCCCCCCCccEEE
Confidence               7889999 999999  8899999999999999999863       56778889999999999999641111235899


Q ss_pred             EEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363          252 TAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL  330 (568)
Q Consensus       252 s~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~  330 (568)
                      +++.|+ |++||+++. .....+.+|...|++++|+|++++|++++.||+|+|||++.        +        +++..
T Consensus       171 s~~~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~--------~--------~~~~~  233 (319)
T 3frx_A          171 SAGNDKMVKAWNLNQF-QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA--------K--------KAMYT  233 (319)
T ss_dssp             EEETTSCEEEEETTTT-EEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTT--------T--------EEEEE
T ss_pred             EEeCCCEEEEEECCcc-hhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--------C--------cEEEE
Confidence            999999 999999976 77788889999999999999999999999999999999953        3        23456


Q ss_pred             EecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCC-------CcceeeeecccCCCCceEEcccCCCCC
Q 008363          331 VNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRN-------RPMHFLCGSVTEDESAITVNTPLDNTP  403 (568)
Q Consensus       331 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~-------~~~~~~~~s~~~~~~~i~~~~~~~~~~  403 (568)
                      +.. ...|.+++|+|++.+|++++.+ .+++|++............       ..+...+.++++++..|+.+.....+.
T Consensus       234 ~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~  311 (319)
T 3frx_A          234 LSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIR  311 (319)
T ss_dssp             EEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEE
Confidence            654 4689999999999999988755 5999999876544332111       123456778999999998887665553

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.97  E-value=1.3e-29  Score=257.37  Aligned_cols=243  Identities=18%  Similarity=0.277  Sum_probs=194.4

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC--ceeeEEeccCC--------------ccCCC
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL--RTMKAIYLSSM--------------KEGTD  158 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~--~~~~~l~~~~~--------------~~~~~  158 (568)
                      ..+|.+ .|.+++|+|++          .+||+|+.|++|+||++..+  .++..+.+|..              ++++.
T Consensus        57 ~~~h~~-~v~~~~~sp~g----------~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~  125 (345)
T 3fm0_A           57 SEGHQR-TVRKVAWSPCG----------NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR  125 (345)
T ss_dssp             CSSCSS-CEEEEEECTTS----------SEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ccccCC-cEEEEEECCCC----------CEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEEC
Confidence            357888 55599999999          89999999999999999875  45666766654              56788


Q ss_pred             CceEEEeecce-----ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCee
Q 008363          159 PRFVKLEPVFR-----CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIR  233 (568)
Q Consensus       159 ~~~v~~~~~~~-----~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~  233 (568)
                      ++.+++|+...     +...+.+|...| .+++|+  |++.+|++|+.||+|++||+....    ..+...+.+|...|.
T Consensus       126 D~~v~iwd~~~~~~~~~~~~~~~h~~~v-~~~~~~--p~~~~l~s~s~d~~i~~w~~~~~~----~~~~~~~~~h~~~v~  198 (345)
T 3fm0_A          126 DKSVWVWEVDEEDEYECVSVLNSHTQDV-KHVVWH--PSQELLASASYDDTVKLYREEEDD----WVCCATLEGHESTVW  198 (345)
T ss_dssp             TSCEEEEEECTTSCEEEEEEECCCCSCE-EEEEEC--SSSSCEEEEETTSCEEEEEEETTE----EEEEEEECCCSSCEE
T ss_pred             CCeEEEEECCCCCCeEEEEEecCcCCCe-EEEEEC--CCCCEEEEEeCCCcEEEEEecCCC----EEEEEEecCCCCceE
Confidence            99999998753     455677899999 999999  889999999999999999998651    245678899999999


Q ss_pred             EEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCC--------------cceeeeCC-CCCCeEEEEEcCCCCEEEEEeC
Q 008363          234 AVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPF--------------RPLWDIHP-APKFIYGLDWLPDPGCVILSFD  297 (568)
Q Consensus       234 ~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~--------------~~~~~~~~-h~~~i~~l~~sp~~~~l~s~~~  297 (568)
                      +|+|+|++      .+|++++.|+ |++||+....              .++..+.+ |...|++++|+|++..|++++.
T Consensus       199 ~l~~sp~g------~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~  272 (345)
T 3fm0_A          199 SLAFDPSG------QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG  272 (345)
T ss_dssp             EEEECTTS------SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET
T ss_pred             EEEECCCC------CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC
Confidence            99999999      8999999999 9999975332              12333444 8889999999999999999999


Q ss_pred             CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCCCe
Q 008363          298 DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       298 dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~~~  368 (568)
                      |+.|++|+.......    ..+.   .....+.+.+|...|++++|+|++ .+|++|+.||+|++|++.+.+
T Consensus       273 d~~i~vw~~~~~~~~----~~~~---~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~  337 (345)
T 3fm0_A          273 DDAIRVFQEDPNSDP----QQPT---FSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE  337 (345)
T ss_dssp             TSCEEEEEECTTSCT----TSCC---EEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred             CCeEEEEEeCCCCCc----ceee---EEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence            999999998542210    0110   000112345899999999999997 599999999999999997654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.97  E-value=1.1e-29  Score=259.32  Aligned_cols=205  Identities=14%  Similarity=0.157  Sum_probs=175.4

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      ..+|.+ .|++++|+|++          .+|++|+.||.|+|||+.+++++..+                          
T Consensus       135 ~~~h~~-~V~~v~~spdg----------~~l~sgs~dg~v~iwd~~~~~~~~~~--------------------------  177 (357)
T 4g56_B          135 KYEHDD-IVKTLSVFSDG----------TQAVSGGKDFSVKVWDLSQKAVLKSY--------------------------  177 (357)
T ss_dssp             ECCCSS-CEEEEEECSSS----------SEEEEEETTSCEEEEETTTTEEEEEE--------------------------
T ss_pred             cCCCCC-CEEEEEECCCC----------CEEEEEeCCCeEEEEECCCCcEEEEE--------------------------
Confidence            457888 55699999999          89999999999999999998888776                          


Q ss_pred             cCCcCccceEEEEccCCCC-CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363          175 CGGTQSIPLTMEWSTSPPH-DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA  253 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~  253 (568)
                      .+|...| ++++|+  +++ .+|++++.||+|+|||++++..    .....+..|...+.+++|+|++     ..+|++|
T Consensus       178 ~~h~~~v-~~v~~s--~~~~~~~~s~~~dg~v~~wd~~~~~~----~~~~~~~~~~~~v~~v~~sp~~-----~~~la~g  245 (357)
T 4g56_B          178 NAHSSEV-NCVAAC--PGKDTIFLSCGEDGRILLWDTRKPKP----ATRIDFCASDTIPTSVTWHPEK-----DDTFACG  245 (357)
T ss_dssp             CCCSSCE-EEEEEC--TTCSSCEEEEETTSCEEECCTTSSSC----BCBCCCTTCCSCEEEEEECTTS-----TTEEEEE
T ss_pred             cCCCCCE-EEEEEc--cCCCceeeeeccCCceEEEECCCCce----eeeeeeccccccccchhhhhcc-----cceEEEe
Confidence            7889999 999999  555 4899999999999999987622    2222344677889999999986     3799999


Q ss_pred             cCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363          254 GHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDP-GCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV  331 (568)
Q Consensus       254 s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~-~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~  331 (568)
                      +.|+ |++||++++ .++..+.+|...|++++|+|++ ++|++++.|++|+|||++.        ++++         ..
T Consensus       246 ~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~--------~~~~---------~~  307 (357)
T 4g56_B          246 DETGNVSLVNIKNP-DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF--------SEVF---------RD  307 (357)
T ss_dssp             ESSSCEEEEESSCG-GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS--------CEEE---------EE
T ss_pred             ecccceeEEECCCC-cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC--------CcEe---------EE
Confidence            9998 999999987 8888999999999999999987 5788999999999999943        4332         44


Q ss_pred             ecCCCCEEEEEEec-CCCEEEEEeCCCeEEEEEcCC
Q 008363          332 NCSSFAIWSVQVSR-LTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       332 ~~h~~~V~~l~~sp-~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                      .+|...|++|+|+| ++.+|++++.||+|++|++..
T Consensus       308 ~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          308 LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence            58999999999998 689999999999999999954

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.97  E-value=5.1e-30  Score=263.91  Aligned_cols=236  Identities=14%  Similarity=0.177  Sum_probs=191.4

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc-------eeeEEeccCC----------
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR-------TMKAIYLSSM----------  153 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~-------~~~~l~~~~~----------  153 (568)
                      .+.....|.. .|.+++|+|++          .+||+|+.|+.|+||++.+..       ....+.+|..          
T Consensus       100 ~~~~~~~h~~-~v~~~~~s~~g----------~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~  168 (380)
T 3iz6_a          100 KTHAIKLHCP-WVMECAFAPNG----------QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPD  168 (380)
T ss_dssp             EEEEEECCCT-TCCCCEECTTS----------SEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSS
T ss_pred             cceEEecCCC-CEEEEEECCCC----------CEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecC
Confidence            4455667888 45599999999          899999999999999986521       2223333322          


Q ss_pred             -----ccCCCCceEEEeecce--eccc-----ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCce
Q 008363          154 -----KEGTDPRFVKLEPVFR--CSML-----KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRP  221 (568)
Q Consensus       154 -----~~~~~~~~v~~~~~~~--~~~~-----~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~  221 (568)
                           ++++.++.+++|+..+  +...     ..+|...| .+++|++. ++.+|++|+.||+|++||++..     ..+
T Consensus       169 ~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~-----~~~  241 (380)
T 3iz6_a          169 QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV-LSLSINSL-NANMFISGSCDTTVRLWDLRIT-----SRA  241 (380)
T ss_dssp             SSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCE-EEEEECSS-SCCEEEEEETTSCEEEEETTTT-----CCC
T ss_pred             CCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCe-EEEEeecC-CCCEEEEEECCCeEEEEECCCC-----Ccc
Confidence                 5678899999999876  2222     26899999 99999732 6789999999999999999743     267


Q ss_pred             eEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCC-------CCeEEEEEcCCCCEEE
Q 008363          222 LLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAP-------KFIYGLDWLPDPGCVI  293 (568)
Q Consensus       222 ~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~-------~~i~~l~~sp~~~~l~  293 (568)
                      +..+.+|...|.+++|+|++      .+|++|+.|+ |++||++++ .++..+..+.       ..|++++|+|+|++|+
T Consensus       242 ~~~~~~h~~~v~~v~~~p~~------~~l~s~s~D~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  314 (380)
T 3iz6_a          242 VRTYHGHEGDINSVKFFPDG------QRFGTGSDDGTCRLFDMRTG-HQLQVYNREPDRNDNELPIVTSVAFSISGRLLF  314 (380)
T ss_dssp             CEEECCCSSCCCEEEECTTS------SEEEEECSSSCEEEEETTTT-EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEE
T ss_pred             eEEECCcCCCeEEEEEecCC------CeEEEEcCCCeEEEEECCCC-cEEEEecccccccccccCceEEEEECCCCCEEE
Confidence            78899999999999999999      8999999999 999999987 6666554432       3489999999999999


Q ss_pred             EEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE----ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363          294 LSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV----NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       294 s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~----~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~  367 (568)
                      +|+.||.|++||+..        ++.+        ..+    .+|...|++++|+|++.+|++|+.||+|+||++...
T Consensus       315 ~g~~dg~i~vwd~~~--------~~~~--------~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          315 AGYSNGDCYVWDTLL--------AEMV--------LNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             EECTTSCEEEEETTT--------CCEE--------EEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred             EEECCCCEEEEECCC--------CceE--------EEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence            999999999999843        3332        333    579999999999999999999999999999999643

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=8.2e-29  Score=258.39  Aligned_cols=237  Identities=18%  Similarity=0.304  Sum_probs=198.4

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------ccCCCC
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------KEGTDP  159 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------~~~~~~  159 (568)
                      +....+|.. .|.+|+|+|++          .+||+|+.||+|+|||+.+++++..+.+|..            +.++.+
T Consensus       140 ~~~~~~~~~-~V~sv~fspdg----------~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d  208 (420)
T 4gga_A          140 LLQMEQPGE-YISSVAWIKEG----------NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRS  208 (420)
T ss_dssp             EEECCSTTC-CEEEEEECTTS----------SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETT
T ss_pred             EEEecCCCC-cEEEEEECCCC----------CEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCC
Confidence            333446666 56699999999          8999999999999999999999998887765            567788


Q ss_pred             ceEEEeecce---ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEE
Q 008363          160 RFVKLEPVFR---CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVS  236 (568)
Q Consensus       160 ~~v~~~~~~~---~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~  236 (568)
                      ..+.+|+...   ....+.+|...+ ..+.|+  +++.+|++++.||.|++|++..+..  ....+..+..|...|.+++
T Consensus       209 ~~i~~~d~~~~~~~~~~~~~h~~~~-~~~~~~--~~g~~l~s~~~D~~v~i~~~~~~~~--~~~~~~~~~~~~~~V~~~~  283 (420)
T 4gga_A          209 GHIHHHDVRVAEHHVATLSGHSQEV-CGLRWA--PDGRHLASGGNDNLVNVWPSAPGEG--GWVPLQTFTQHQGAVKAVA  283 (420)
T ss_dssp             SEEEEEETTSSSCEEEEEECCSSCE-EEEEEC--TTSSEEEEEETTSCEEEEESSCCSS--CSCCSEEECCCSSCEEEEE
T ss_pred             CceeEeeecccceeeEEecccccce-eeeeec--CCCCeeeeeeccccceEEeeccccc--cceeeeeecccCCceeeee
Confidence            8889988765   344567899999 999999  8899999999999999999986532  2245677889999999999


Q ss_pred             EccCCCCCCCCcEEEEE--cCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEcccccc
Q 008363          237 WAPAESDSDSANVILTA--GHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF--DDGAMRIVSLLKAAY  311 (568)
Q Consensus       237 ~~p~~~~~~~~~~las~--s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~--~dg~I~lwd~~~~~~  311 (568)
                      |+|.+     ..+++++  +.|+ |+|||++++ .++..+..| ..+.++.|+|++..|++++  .|+.|+|||+++   
T Consensus       284 ~~p~~-----~~~la~~~gs~D~~I~iwd~~t~-~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~---  353 (420)
T 4gga_A          284 WCPWQ-----SNVLATGGGTSDRHIRIWNVCSG-ACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPT---  353 (420)
T ss_dssp             ECTTC-----TTEEEEEECTTTCEEEEEETTTT-EEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTT---
T ss_pred             eCCCc-----ccEEEEEeecCCCEEEEEeCCcc-ccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCC---
Confidence            99987     3777764  4688 999999987 667666544 5689999999999999875  699999999953   


Q ss_pred             CCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363          312 DVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       312 ~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~  367 (568)
                           ++        ++..+.+|.+.|++|+|+|+|.+|+||+.|++|+|||+...
T Consensus       354 -----~~--------~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~  396 (420)
T 4gga_A          354 -----MA--------KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  396 (420)
T ss_dssp             -----CC--------EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred             -----Cc--------EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence                 53        35789999999999999999999999999999999999654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=6.2e-29  Score=250.28  Aligned_cols=241  Identities=14%  Similarity=0.166  Sum_probs=185.3

Q ss_pred             EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc-----eeeEEeccCC---------------
Q 008363           94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR-----TMKAIYLSSM---------------  153 (568)
Q Consensus        94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~-----~~~~l~~~~~---------------  153 (568)
                      .+.+|.+ .|++|+|+|+++         .+||||+.||+|+|||+.+.+     +...+.+|..               
T Consensus        33 tL~GH~~-~V~~v~~sp~~~---------~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~  102 (340)
T 4aow_A           33 TLKGHNG-WVTQIATTPQFP---------DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFAL  102 (340)
T ss_dssp             EECCCSS-CEEEEEECTTCT---------TEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EECCccC-CEEEEEEeCCCC---------CEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEE
Confidence            3578999 566999999854         799999999999999987643     3344444433               


Q ss_pred             -----------------------------------------ccCCCCceEEEeecce---ecccccCCcCccceEEEEcc
Q 008363          154 -----------------------------------------KEGTDPRFVKLEPVFR---CSMLKCGGTQSIPLTMEWST  189 (568)
Q Consensus       154 -----------------------------------------~~~~~~~~v~~~~~~~---~~~~~~~h~~~V~~~v~~s~  189 (568)
                                                               +.++.++.+++|+...   ......+|...+ .+++|++
T Consensus       103 s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v-~~~~~~~  181 (340)
T 4aow_A          103 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWV-SCVRFSP  181 (340)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCE-EEEEECS
T ss_pred             EEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcc-cceEEcc
Confidence                                                     2344566666666543   223456788888 9999997


Q ss_pred             CCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCc
Q 008363          190 SPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFR  268 (568)
Q Consensus       190 ~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~  268 (568)
                      .+...++++++.|++|++||+...      .++..+.+|.+.|++|+|+|++      .+|++|+.|+ |++||+++. .
T Consensus       182 ~~~~~~~~s~~~d~~i~i~d~~~~------~~~~~~~~h~~~v~~~~~s~~~------~~l~s~s~Dg~i~iwd~~~~-~  248 (340)
T 4aow_A          182 NSSNPIIVSCGWDKLVKVWNLANC------KLKTNHIGHTGYLNTVTVSPDG------SLCASGGKDGQAMLWDLNEG-K  248 (340)
T ss_dssp             CSSSCEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTS------SEEEEEETTCEEEEEETTTT-E
T ss_pred             CCCCcEEEEEcCCCEEEEEECCCC------ceeeEecCCCCcEEEEEECCCC------CEEEEEeCCCeEEEEEeccC-c
Confidence            666678999999999999999976      8888999999999999999999      8999999999 999999987 7


Q ss_pred             ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcc-ccceEEEecCCCCEEEEEEecCC
Q 008363          269 PLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTK-QQGLHLVNCSSFAIWSVQVSRLT  347 (568)
Q Consensus       269 ~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~-~~~l~~~~~h~~~V~~l~~sp~~  347 (568)
                      ++..+.. ...|.+++|+|++. +++++.|+.|++||++.        +..+.... ........+|...|++++|+|++
T Consensus       249 ~~~~~~~-~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~--------~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg  318 (340)
T 4aow_A          249 HLYTLDG-GDIINALCFSPNRY-WLCAATGPSIKIWDLEG--------KIIVDELKQEVISTSSKAEPPQCTSLAWSADG  318 (340)
T ss_dssp             EEEEEEC-SSCEEEEEECSSSS-EEEEEETTEEEEEETTT--------TEEEEEECCC-------CCCCCEEEEEECTTS
T ss_pred             eeeeecC-CceEEeeecCCCCc-eeeccCCCEEEEEECCC--------CeEEEeccccceeeeccCCCCCEEEEEECCCC
Confidence            7776654 46799999999876 55666799999999954        21110000 01122445789999999999999


Q ss_pred             CEEEEEeCCCeEEEEEcCCCe
Q 008363          348 GMVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       348 ~~l~s~s~Dg~v~iwd~~~~~  368 (568)
                      ++|++|+.||.|+|||+.+|.
T Consensus       319 ~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          319 QTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             SEEEEEETTSCEEEEEEEC--
T ss_pred             CEEEEEeCCCEEEEEeCCCcC
Confidence            999999999999999998764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-28  Score=252.10  Aligned_cols=251  Identities=15%  Similarity=0.188  Sum_probs=202.1

Q ss_pred             EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC--CceeeEEeccCCccCCCCceEEEeecceec
Q 008363           94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL--LRTMKAIYLSSMKEGTDPRFVKLEPVFRCS  171 (568)
Q Consensus        94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~--~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~  171 (568)
                      .+.+|.+ .|.+++|+|++          .+||+|+.||.|+||++..  +..+..+                       
T Consensus         6 ~~~~h~~-~v~~~~~s~~~----------~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----------------------   51 (379)
T 3jrp_A            6 IANAHNE-LIHDAVLDYYG----------KRLATCSSDKTIKIFEVEGETHKLIDTL-----------------------   51 (379)
T ss_dssp             CEEECCC-CEEEEEECSSS----------SEEEEEETTSCEEEEEEETTEEEEEEEE-----------------------
T ss_pred             EecCCcc-cEEEEEEcCCC----------CEEEEEECCCcEEEEecCCCcceeeeEe-----------------------
Confidence            3568998 55599999999          7999999999999999984  4444444                       


Q ss_pred             ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC--CCCCCCCcE
Q 008363          172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA--ESDSDSANV  249 (568)
Q Consensus       172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~--~~~~~~~~~  249 (568)
                         .+|...| ++++|++..++.+|++|+.||.|++||+.++.    ...+..+..|...|.+++|+|+  +      .+
T Consensus        52 ---~~h~~~v-~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~------~~  117 (379)
T 3jrp_A           52 ---TGHEGPV-WRVDWAHPKFGTILASCSYDGKVLIWKEENGR----WSQIAVHAVHSASVNSVQWAPHEYG------PL  117 (379)
T ss_dssp             ---CCCSSCE-EEEEECCGGGCSEEEEEETTSCEEEEEEETTE----EEEEEEECCCSSCEEEEEECCGGGC------SE
T ss_pred             ---cCCCCcE-EEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc----eeEeeeecCCCcceEEEEeCCCCCC------CE
Confidence               7899999 99999833338999999999999999999761    1377788899999999999999  7      89


Q ss_pred             EEEEcCCC-EEEEECCCCC-cceeeeCCCCCCeEEEEEcC-------------CCCEEEEEeCCCcEEEEEccccccCCC
Q 008363          250 ILTAGHGG-LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLP-------------DPGCVILSFDDGAMRIVSLLKAAYDVP  314 (568)
Q Consensus       250 las~s~d~-v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp-------------~~~~l~s~~~dg~I~lwd~~~~~~~~~  314 (568)
                      |++++.|+ |++||++... .....+..|...|++++|+|             ++.+|++++.||.|++||++.      
T Consensus       118 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~------  191 (379)
T 3jrp_A          118 LLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS------  191 (379)
T ss_dssp             EEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEET------
T ss_pred             EEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecC------
Confidence            99999999 9999999763 23456678999999999999             699999999999999999964      


Q ss_pred             CCCCCccCccccceEEEecCCCCEEEEEEecC---CCEEEEEeCCCeEEEEEcCCCe----eeccCCCCCcceeeeeccc
Q 008363          315 ATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL---TGMVAYCSADGTVHRFQLTAKA----VEKDHSRNRPMHFLCGSVT  387 (568)
Q Consensus       315 ~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~---~~~l~s~s~Dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~s~~  387 (568)
                        +...    ...+..+.+|...|++++|+|+   +.+|++++.||.|++||+.++.    ............+.+.+++
T Consensus       192 --~~~~----~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s  265 (379)
T 3jrp_A          192 --DAQT----YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS  265 (379)
T ss_dssp             --TTTE----EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEEC
T ss_pred             --CCcc----eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEc
Confidence              2211    1345678899999999999999   8999999999999999998763    1111111122345566889


Q ss_pred             CCCCceEEcccCCCCCc
Q 008363          388 EDESAITVNTPLDNTPV  404 (568)
Q Consensus       388 ~~~~~i~~~~~~~~~~~  404 (568)
                      +++..++++.....+.+
T Consensus       266 ~~g~~l~~~~~dg~i~i  282 (379)
T 3jrp_A          266 LSGNVLALSGGDNKVTL  282 (379)
T ss_dssp             SSSCCEEEEESSSSEEE
T ss_pred             CCCCEEEEecCCCcEEE
Confidence            99999888776655533

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.97  E-value=1.2e-28  Score=269.80  Aligned_cols=273  Identities=12%  Similarity=0.114  Sum_probs=211.9

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCCc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDPR  160 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~~  160 (568)
                      +.+|.+ .|++++|+|+++         .+|++|+.|++|+|||..++++...+.+|..              ++++.|+
T Consensus       143 l~gh~~-~v~~v~f~p~~~---------~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~  212 (611)
T 1nr0_A          143 LTGQAR-AMNSVDFKPSRP---------FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG  212 (611)
T ss_dssp             CCCCSS-CEEEEEECSSSS---------CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ecCCCC-CceEEEECCCCC---------eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCC
Confidence            457888 566999999984         4799999999999999999888888877765              5678899


Q ss_pred             eEEEeecce--ecccc-c------CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCC--------------
Q 008363          161 FVKLEPVFR--CSMLK-C------GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSI--------------  217 (568)
Q Consensus       161 ~v~~~~~~~--~~~~~-~------~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~--------------  217 (568)
                      .+++|+...  +...+ .      +|...| ++++|+  |+|.+|++|+.|++|+|||+.++....              
T Consensus       213 ~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V-~~v~~s--pdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~  289 (611)
T 1nr0_A          213 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSV-FGLTWS--PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG  289 (611)
T ss_dssp             CEEEEETTTCCEEEECBCTTSSSCSSSSCE-EEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEE
T ss_pred             cEEEEECCCCcEeeeeccccccccccCCCE-EEEEEC--CCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEE
Confidence            999999754  33233 2      799999 999999  889999999999999999998652100              


Q ss_pred             -----------------------CCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeee
Q 008363          218 -----------------------DSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDI  273 (568)
Q Consensus       218 -----------------------~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~  273 (568)
                                             ...+...+.+|...|.+++|+|++      .+|++++.|+ |++||+.++. ....+
T Consensus       290 ~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg------~~l~s~s~D~~v~~Wd~~~~~-~~~~~  362 (611)
T 1nr0_A          290 IIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG------KTLFSADAEGHINSWDISTGI-SNRVF  362 (611)
T ss_dssp             EEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS------SEEEEEETTSCEEEEETTTCC-EEECS
T ss_pred             EEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC------CEEEEEeCCCcEEEEECCCCc-eeeec
Confidence                                   012334567899999999999999      8999999999 9999987652 11110


Q ss_pred             -C------------------------------------------------------------------------------
Q 008363          274 -H------------------------------------------------------------------------------  274 (568)
Q Consensus       274 -~------------------------------------------------------------------------------  274 (568)
                       .                                                                              
T Consensus       363 ~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~  442 (611)
T 1nr0_A          363 PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL  442 (611)
T ss_dssp             SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE
T ss_pred             ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCce
Confidence             0                                                                              


Q ss_pred             ---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEE
Q 008363          275 ---PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVA  351 (568)
Q Consensus       275 ---~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~  351 (568)
                         .|...+.+++|+|+|++|++|+.|++|+|||+..        +..      ..+.. .+|...|++++|+|++++|+
T Consensus       443 ~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~--------~~~------~~~~~-~~h~~~v~~v~fspdg~~la  507 (611)
T 1nr0_A          443 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG--------ASV------SEVKT-IVHPAEITSVAFSNNGAFLV  507 (611)
T ss_dssp             EEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET--------TEE------EEEEE-EECSSCEEEEEECTTSSEEE
T ss_pred             eeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccC--------Cce------eeeec-cCCCCceEEEEECCCCCEEE
Confidence               1234578899999999999999999999999943        211      12234 67999999999999999999


Q ss_pred             EEeCCCeEEEEEcCC-Ceeecc-CCCCCcceeeeecccCCCCceEEcccCCCC
Q 008363          352 YCSADGTVHRFQLTA-KAVEKD-HSRNRPMHFLCGSVTEDESAITVNTPLDNT  402 (568)
Q Consensus       352 s~s~Dg~v~iwd~~~-~~~~~~-~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~  402 (568)
                      +++.|++|++|++.+ +..... ........+.+.++++++..|+.++....+
T Consensus       508 s~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v  560 (611)
T 1nr0_A          508 ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV  560 (611)
T ss_dssp             EEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcE
Confidence            999999999999987 444332 111123456778899999999888766555

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.4e-29  Score=251.15  Aligned_cols=232  Identities=15%  Similarity=0.212  Sum_probs=181.2

Q ss_pred             cCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC-------CceeeEEeccCC--------------ccC
Q 008363           98 HNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL-------LRTMKAIYLSSM--------------KEG  156 (568)
Q Consensus        98 h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~-------~~~~~~l~~~~~--------------~~~  156 (568)
                      |.+ .|++++|+|++          .+||+|+.|++|+||++..       .+++..+.+|..              +++
T Consensus        57 h~~-~v~~v~~sp~~----------~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~  125 (330)
T 2hes_X           57 HKK-AIRSVAWRPHT----------SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATC  125 (330)
T ss_dssp             CCS-CEEEEEECTTS----------SEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEE
T ss_pred             ccC-CEEEEEECCCC----------CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEE
Confidence            888 56699999999          7999999999999999853       345555655544              567


Q ss_pred             CCCceEEEeecc------eecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCC
Q 008363          157 TDPRFVKLEPVF------RCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTL  230 (568)
Q Consensus       157 ~~~~~v~~~~~~------~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~  230 (568)
                      +.++.+++|+..      .+...+.+|...| .+++|+  |++.+|++|+.||+|++||+...    ...++..+.+|..
T Consensus       126 s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v-~~v~~~--p~~~~l~s~s~D~~i~iW~~~~~----~~~~~~~~~~h~~  198 (330)
T 2hes_X          126 SRDKSVWIWETDESGEEYECISVLQEHSQDV-KHVIWH--PSEALLASSSYDDTVRIWKDYDD----DWECVAVLNGHEG  198 (330)
T ss_dssp             ETTSCEEEEECCTTCCCCEEEEEECCCSSCE-EEEEEC--SSSSEEEEEETTSCEEEEEEETT----EEEEEEEECCCSS
T ss_pred             eCCCEEEEEeccCCCCCeEEEEEeccCCCce-EEEEEC--CCCCEEEEEcCCCeEEEEECCCC----CeeEEEEccCCCC
Confidence            889999999883      2455678999999 999999  78999999999999999998754    1257788999999


Q ss_pred             CeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCC-------cceeeeCC-CCCCeEEEEEcCCCCEEEEEeCCCcE
Q 008363          231 PIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPF-------RPLWDIHP-APKFIYGLDWLPDPGCVILSFDDGAM  301 (568)
Q Consensus       231 ~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~-------~~~~~~~~-h~~~i~~l~~sp~~~~l~s~~~dg~I  301 (568)
                      .|.+++|+|++    ...+|++++.|+ |++||++...       .+...+.. |...|++++|++++ +|++++.||.|
T Consensus       199 ~v~~~~~~~~~----~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v  273 (330)
T 2hes_X          199 TVWSSDFDKTE----GVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVL  273 (330)
T ss_dssp             CEEEEEECCSS----SSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCE
T ss_pred             cEEEEEecCCC----CeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEE
Confidence            99999999983    126899999999 9999997542       22344444 89999999999765 79999999999


Q ss_pred             EEEEccccccCCCCCCCCccCccccceE-EEecCCC-CEEEEEEec--CCCEEEEEeCCCeEEEEEcCC
Q 008363          302 RIVSLLKAAYDVPATGKPFAGTKQQGLH-LVNCSSF-AIWSVQVSR--LTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       302 ~lwd~~~~~~~~~~~g~~~~~~~~~~l~-~~~~h~~-~V~~l~~sp--~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                      +|||...        ++.      ..+. .+.+|.. .|++++|+|  ++.+|++++.||+|+||++..
T Consensus       274 ~iw~~~~--------~~~------~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          274 AVYEEVD--------GEW------KVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEEEEET--------TEE------EEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EEEEcCC--------Cce------EEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            9999843        211      1112 3357887 899999999  689999999999999999853

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.97  E-value=1.1e-28  Score=255.13  Aligned_cols=222  Identities=15%  Similarity=0.235  Sum_probs=187.7

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCCceEEEeec
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDPRFVKLEPV  167 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~~~v~~~~~  167 (568)
                      .|.+++|+|++          .+||+|+.||.|+|||+.+++.+..+.+|..              ++++.++.+++|+.
T Consensus       125 ~v~~v~~s~dg----------~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~  194 (393)
T 1erj_A          125 YIRSVCFSPDG----------KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL  194 (393)
T ss_dssp             BEEEEEECTTS----------SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             eEEEEEECCCC----------CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEEC
Confidence            46799999999          8999999999999999999988888877765              56778999999998


Q ss_pred             ce--ecccccCCcCccceEEEEccCC-CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe-------eCCCCCeeEEEE
Q 008363          168 FR--CSMLKCGGTQSIPLTMEWSTSP-PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF-------SADTLPIRAVSW  237 (568)
Q Consensus       168 ~~--~~~~~~~h~~~V~~~v~~s~~~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~-------~~h~~~V~~v~~  237 (568)
                      .+  +... ..+...+ .+++|+  | ++.+|++|+.||+|++||+.++      ..+..+       .+|...|.+++|
T Consensus       195 ~~~~~~~~-~~~~~~v-~~~~~~--~~~~~~l~~~s~d~~v~iwd~~~~------~~~~~~~~~~~~~~~h~~~v~~v~~  264 (393)
T 1erj_A          195 RTGQCSLT-LSIEDGV-TTVAVS--PGDGKYIAAGSLDRAVRVWDSETG------FLVERLDSENESGTGHKDSVYSVVF  264 (393)
T ss_dssp             TTTEEEEE-EECSSCE-EEEEEC--STTCCEEEEEETTSCEEEEETTTC------CEEEEEC------CCCSSCEEEEEE
T ss_pred             CCCeeEEE-EEcCCCc-EEEEEE--CCCCCEEEEEcCCCcEEEEECCCC------cEEEeecccccCCCCCCCCEEEEEE
Confidence            65  2222 2355667 899999  5 7889999999999999999876      455444       579999999999


Q ss_pred             ccCCCCCCCCcEEEEEcCCC-EEEEECCCCC-----------cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 008363          238 APAESDSDSANVILTAGHGG-LKFWDIRDPF-----------RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVS  305 (568)
Q Consensus       238 ~p~~~~~~~~~~las~s~d~-v~lwD~~~~~-----------~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd  305 (568)
                      +|++      .+|++++.|+ |++||++...           .+...+.+|...|.+++|+|++.+|++++.|+.|++||
T Consensus       265 ~~~g------~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd  338 (393)
T 1erj_A          265 TRDG------QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD  338 (393)
T ss_dssp             CTTS------SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEE
T ss_pred             CCCC------CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            9999      8999999999 9999998642           23456778999999999999999999999999999999


Q ss_pred             ccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEec------CCCEEEEEeCCCeEEEEEcC
Q 008363          306 LLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSR------LTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       306 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp------~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      ++.        |++        +..+.+|...|.+++|++      ++.+|++|+.||+|+||++.
T Consensus       339 ~~~--------~~~--------~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          339 KKS--------GNP--------LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  388 (393)
T ss_dssp             TTT--------CCE--------EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCC--------CeE--------EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence            943        533        468899999999999986      57899999999999999984

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.97  E-value=3.2e-28  Score=246.80  Aligned_cols=238  Identities=18%  Similarity=0.208  Sum_probs=188.0

Q ss_pred             EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCC
Q 008363           93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTD  158 (568)
Q Consensus        93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~  158 (568)
                      ..+.+|.. .|.+++|+|++          .+|++|+.|++|+|||+.+++++..+.+|..              +.++.
T Consensus        70 ~~l~~h~~-~V~~~~~~~~~----------~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~  138 (343)
T 2xzm_R           70 KALTGHNH-FVSDLALSQEN----------CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA  138 (343)
T ss_dssp             EEECCCSS-CEEEEEECSST----------TEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET
T ss_pred             chhccCCC-ceEEEEECCCC----------CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC
Confidence            34568988 55599999999          7999999999999999999999888887765              56778


Q ss_pred             CceEEEeecce-ec---ccccCCcCccceEEEEccCCCC----------CEEEEEeCCCeEEEEEccCCCCCCCCceeEE
Q 008363          159 PRFVKLEPVFR-CS---MLKCGGTQSIPLTMEWSTSPPH----------DYLLAGCHDGTVALWKFVASDSSIDSRPLLC  224 (568)
Q Consensus       159 ~~~v~~~~~~~-~~---~~~~~h~~~V~~~v~~s~~~~g----------~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~  224 (568)
                      ++.+++|+... +.   ....+|...| .+++|+  |++          .+|++|+.||+|++||.. .      .....
T Consensus       139 d~~i~~wd~~~~~~~~~~~~~~~~~~v-~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~------~~~~~  208 (343)
T 2xzm_R          139 EREIKLWNILGECKFSSAEKENHSDWV-SCVRYS--PIMKSANKVQPFAPYFASVGWDGRLKVWNTN-F------QIRYT  208 (343)
T ss_dssp             TSCEEEEESSSCEEEECCTTTSCSSCE-EEEEEC--CCCCSCSCCCSSCCEEEEEETTSEEEEEETT-T------EEEEE
T ss_pred             CCEEEEEeccCCceeeeecccCCCcee-eeeeec--cccccccccCCCCCEEEEEcCCCEEEEEcCC-C------ceeEE
Confidence            89999999753 11   1233788999 999999  544          699999999999999943 2      56778


Q ss_pred             eeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 008363          225 FSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRI  303 (568)
Q Consensus       225 ~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~l  303 (568)
                      +.+|...|.+++|+|++      .+|++|+.|+ |++||++....+...+ .+...|++++|+|++.+|++ +.|+.|++
T Consensus       209 ~~~h~~~v~~~~~s~~g------~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~-~~d~~v~i  280 (343)
T 2xzm_R          209 FKAHESNVNHLSISPNG------KYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAV-GTDQGVKI  280 (343)
T ss_dssp             EECCSSCEEEEEECTTS------SEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEE-EESSCEEE
T ss_pred             EcCccccceEEEECCCC------CEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEE-ECCCCEEE
Confidence            89999999999999999      8999999999 9999996554444444 34556999999999987765 45788999


Q ss_pred             EEccccccCCCCCCCCcc-----CccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363          304 VSLLKAAYDVPATGKPFA-----GTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       304 wd~~~~~~~~~~~g~~~~-----~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~  367 (568)
                      ||+..        ++...     ...........+|...|++++|+|++.+|++|+.||.|++|++.++
T Consensus       281 w~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          281 FNLMT--------QSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             EESSS--------CCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             EEeCC--------CCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            99954        22210     0000001112378889999999999999999999999999998653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=1.6e-28  Score=243.84  Aligned_cols=219  Identities=18%  Similarity=0.318  Sum_probs=173.6

Q ss_pred             EEEeeccCCceeeEEEEccC--CCCcccccCcccEEEEEeCCCcEEEEECCCCc--eeeEEeccCCccCCCCceEEEeec
Q 008363           92 VVLCLAHNGKVAWDVKWKPY--NAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR--TMKAIYLSSMKEGTDPRFVKLEPV  167 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~--~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~--~~~~l~~~~~~~~~~~~~v~~~~~  167 (568)
                      +..+.+|.+ .|++++|+|+  +          .+||+|+.||+|+|||+.++.  .+..+                   
T Consensus        46 ~~~l~gH~~-~V~~v~~s~~~~g----------~~l~s~s~D~~v~iWd~~~~~~~~~~~~-------------------   95 (297)
T 2pm7_B           46 IDTLTGHEG-PVWRVDWAHPKFG----------TILASCSYDGKVMIWKEENGRWSQIAVH-------------------   95 (297)
T ss_dssp             CEEECCCSS-CEEEEEECCGGGC----------SEEEEEETTTEEEEEEBSSSCBCCCEEE-------------------
T ss_pred             EEEEccccC-CeEEEEecCCCcC----------CEEEEEcCCCEEEEEEcCCCceEEEEEe-------------------
Confidence            345678998 5669999864  5          799999999999999998764  23232                   


Q ss_pred             ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCC----
Q 008363          168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESD----  243 (568)
Q Consensus       168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~----  243 (568)
                             .+|...| .+++|+|...+.+|++|+.||+|++||+.....    .....+.+|...|.+++|+|++..    
T Consensus        96 -------~~h~~~v-~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~----~~~~~~~~h~~~v~~~~~~p~~~~~~~~  163 (297)
T 2pm7_B           96 -------AVHSASV-NSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT----TSPIIIDAHAIGVNSASWAPATIEEDGE  163 (297)
T ss_dssp             -------CCCSSCE-EEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC----BCCEEEECCSSCEEEEEECCCC------
T ss_pred             -------ecCCCce-eEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc----eeeeeeecccCccceEeecCCccccccc
Confidence                   6788899 999999443388999999999999999986521    224567899999999999997300    


Q ss_pred             ---CCCCcEEEEEcCCC-EEEEECCCCCc---ceeeeCCCCCCeEEEEEcCCC---CEEEEEeCCCcEEEEEccccccCC
Q 008363          244 ---SDSANVILTAGHGG-LKFWDIRDPFR---PLWDIHPAPKFIYGLDWLPDP---GCVILSFDDGAMRIVSLLKAAYDV  313 (568)
Q Consensus       244 ---~~~~~~las~s~d~-v~lwD~~~~~~---~~~~~~~h~~~i~~l~~sp~~---~~l~s~~~dg~I~lwd~~~~~~~~  313 (568)
                         .....+||+|+.|+ |++||+++...   ....+.+|...|++++|+|++   .+|++++.|++|+|||++...   
T Consensus       164 ~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~---  240 (297)
T 2pm7_B          164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ---  240 (297)
T ss_dssp             ------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT---
T ss_pred             CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC---
Confidence               00126999999999 99999987632   456788999999999999985   899999999999999995411   


Q ss_pred             CCCCCCccCccccceEEE--ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          314 PATGKPFAGTKQQGLHLV--NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       314 ~~~g~~~~~~~~~~l~~~--~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                         +..       ....+  ..|...|++++|+|++.+|++++.||.|+||+..
T Consensus       241 ---~~~-------~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          241 ---GPW-------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             ---SCC-------EEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             ---Ccc-------ceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence               111       01122  4678899999999999999999999999999985

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=2.4e-28  Score=245.62  Aligned_cols=234  Identities=17%  Similarity=0.256  Sum_probs=181.0

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      ..+|.+ .|.+++|+|++          .+||+|+.||.|+|||+.++.....+                      ...+
T Consensus         7 ~~gH~~-~v~~~~~~~~~----------~~l~~~~~dg~i~iw~~~~~~~~~~~----------------------~~~~   53 (351)
T 3f3f_A            7 DSGHDD-LVHDVVYDFYG----------RHVATCSSDQHIKVFKLDKDTSNWEL----------------------SDSW   53 (351)
T ss_dssp             ECCCSS-CEEEEEECSSS----------SEEEEEETTSEEEEEEECSSSCCEEE----------------------EEEE
T ss_pred             Cccccc-ceeEEEEcCCC----------CEEEEeeCCCeEEEEECCCCCCccee----------------------ccee
Confidence            358988 55599999999          79999999999999999875322111                      1112


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCC---CCceeEEeeCCCCCeeEEEEccC--CCCCCCCcE
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSI---DSRPLLCFSADTLPIRAVSWAPA--ESDSDSANV  249 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~---~~~~~~~~~~h~~~V~~v~~~p~--~~~~~~~~~  249 (568)
                      .+|...| ++++|+|..++.+|++|+.||+|++||+..+....   ...++..+.+|...|.+++|+|+  +      .+
T Consensus        54 ~~~~~~v-~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~~  126 (351)
T 3f3f_A           54 RAHDSSI-VAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG------LK  126 (351)
T ss_dssp             ECCSSCE-EEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC------SE
T ss_pred             ccCCCcE-EEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC------cE
Confidence            6899999 99999933258899999999999999998653211   11457788899999999999999  7      89


Q ss_pred             EEEEcCCC-EEEEECCCCCc-----------------------------------------------------------c
Q 008363          250 ILTAGHGG-LKFWDIRDPFR-----------------------------------------------------------P  269 (568)
Q Consensus       250 las~s~d~-v~lwD~~~~~~-----------------------------------------------------------~  269 (568)
                      |++++.|+ |++||+++...                                                           .
T Consensus       127 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  206 (351)
T 3f3f_A          127 LACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV  206 (351)
T ss_dssp             EEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEE
T ss_pred             EEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceee
Confidence            99999999 99999876420                                                           1


Q ss_pred             eeeeCCCCCCeEEEEEcCCC----CEEEEEeCCCcEEEEEccccccCCCCCC----------------------------
Q 008363          270 LWDIHPAPKFIYGLDWLPDP----GCVILSFDDGAMRIVSLLKAAYDVPATG----------------------------  317 (568)
Q Consensus       270 ~~~~~~h~~~i~~l~~sp~~----~~l~s~~~dg~I~lwd~~~~~~~~~~~g----------------------------  317 (568)
                      +..+.+|...|++++|+|++    .+|++++.||.|++||++..........                            
T Consensus       207 ~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (351)
T 3f3f_A          207 AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEE  286 (351)
T ss_dssp             EEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------
T ss_pred             eeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccce
Confidence            34456799999999999998    8999999999999999975311000000                            


Q ss_pred             --CCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363          318 --KPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       318 --~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~  368 (568)
                        ..........+..+.+|...|++++|+|++.+|++++.||.|++|++.++.
T Consensus       287 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          287 KAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             ----CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred             eeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence              000001124566788999999999999999999999999999999997653

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.97  E-value=2.5e-28  Score=243.22  Aligned_cols=233  Identities=15%  Similarity=0.153  Sum_probs=194.5

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCC
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGT  157 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~  157 (568)
                      +..+..|.. .+.+++|+|++          ++|++|+.|++|+|||+.+++++..+.+|..              ++++
T Consensus        48 ~~~~~~~~~-~v~~~~~~~~~----------~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs  116 (304)
T 2ynn_A           48 VRSIQVTET-PVRAGKFIARK----------NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS  116 (304)
T ss_dssp             EEEEECCSS-CEEEEEEEGGG----------TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred             eEEeeccCC-cEEEEEEeCCC----------CEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEEC
Confidence            444556777 56699999999          8999999999999999999999988887765              5778


Q ss_pred             CCceEEEeecce---ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeE-EeeCCCCCee
Q 008363          158 DPRFVKLEPVFR---CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLL-CFSADTLPIR  233 (568)
Q Consensus       158 ~~~~v~~~~~~~---~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~~V~  233 (568)
                      .++.+++|+...   +...+.+|...| .+++|+|. ++.+|++|+.||+|++||+...      .+.. ...+|...|.
T Consensus       117 ~D~~v~lWd~~~~~~~~~~~~~h~~~v-~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~------~~~~~~~~~~~~~v~  188 (304)
T 2ynn_A          117 DDLTVKLWNWENNWALEQTFEGHEHFV-MCVAFNPK-DPSTFASGCLDRTVKVWSLGQS------TPNFTLTTGQERGVN  188 (304)
T ss_dssp             TTSCEEEEEGGGTTEEEEEECCCCSCE-EEEEECTT-CTTEEEEEETTSEEEEEETTCS------SCSEEEECCCTTCEE
T ss_pred             CCCeEEEEECCCCcchhhhhcccCCcE-EEEEECCC-CCCEEEEEeCCCeEEEEECCCC------CccceeccCCcCcEE
Confidence            999999999765   345678999999 99999932 5689999999999999999765      3333 3346778899


Q ss_pred             EEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccC
Q 008363          234 AVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYD  312 (568)
Q Consensus       234 ~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~  312 (568)
                      .+.|+|..    ...+|++++.|+ |++||++++ .++..+.+|...|++++|+|++.+|++++.||+|++||++.    
T Consensus       189 ~~~~~~~~----~~~~l~s~s~D~~i~iWd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~----  259 (304)
T 2ynn_A          189 YVDYYPLP----DKPYMITASDDLTIKIWDYQTK-SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST----  259 (304)
T ss_dssp             EEEECCST----TCCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT----
T ss_pred             EEEEEEcC----CCCEEEEEcCCCeEEEEeCCCC-ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCC----
Confidence            99998843    127999999999 999999987 88899999999999999999999999999999999999943    


Q ss_pred             CCCCCCCccCccccceEEEecCCCCEEEEEEecCCC--EEEEEeCCCeEEEEEcC
Q 008363          313 VPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG--MVAYCSADGTVHRFQLT  365 (568)
Q Consensus       313 ~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~--~l~s~s~Dg~v~iwd~~  365 (568)
                          +++        +..+..|...+++++|+|++.  +|++|+ |..+.+|++.
T Consensus       260 ----~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~asg~-~~g~~~~~~~  301 (304)
T 2ynn_A          260 ----YKV--------EKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLG  301 (304)
T ss_dssp             ----CCE--------EEEECCSSSSEEEEEECTTCGGGCEEEEE-TTEEEEEECC
T ss_pred             ----Cce--------eeeccCCCccEEEEEECCCCCceEEEEec-CCceEEEEec
Confidence                433        468889999999999999874  567766 4557778774

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=6.8e-29  Score=260.30  Aligned_cols=213  Identities=12%  Similarity=0.157  Sum_probs=172.6

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      ...|.. .|.+|+|+|..+         .+||+|+.||.|+|||+.+++....+                        ..
T Consensus       115 ~~~~~~-~V~~l~~~P~~~---------~~lasGs~dg~i~lWd~~~~~~~~~~------------------------~~  160 (435)
T 4e54_B          115 AAPFDR-RATSLAWHPTHP---------STVAVGSKGGDIMLWNFGIKDKPTFI------------------------KG  160 (435)
T ss_dssp             EEECSS-CEEEEEECSSCT---------TCEEEEETTSCEEEECSSCCSCCEEE------------------------CC
T ss_pred             CCCCCC-CEEEEEEeCCCC---------CEEEEEeCCCEEEEEECCCCCceeEE------------------------Ec
Confidence            456777 455999999764         79999999999999999886544332                        11


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe--eCCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF--SADTLPIRAVSWAPAESDSDSANVILT  252 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~--~~h~~~V~~v~~~p~~~~~~~~~~las  252 (568)
                      .+|...| ++|+|+|. ++.+|++|+.||+|+|||+...      ......  ..+...+.+++|+|++      .+|++
T Consensus       161 ~gH~~~V-~~l~f~p~-~~~~l~s~s~D~~v~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~  226 (435)
T 4e54_B          161 IGAGGSI-TGLKFNPL-NTNQFYASSMEGTTRLQDFKGN------ILRVFASSDTINIWFCSLDVSASS------RMVVT  226 (435)
T ss_dssp             CSSSCCC-CEEEECSS-CTTEEEEECSSSCEEEEETTSC------EEEEEECCSSCSCCCCCEEEETTT------TEEEE
T ss_pred             cCCCCCE-EEEEEeCC-CCCEEEEEeCCCEEEEeeccCC------ceeEEeccCCCCccEEEEEECCCC------CEEEE
Confidence            6899999 99999943 5789999999999999999754      222222  2344568899999999      89999


Q ss_pred             EcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363          253 AGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPG-CVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL  330 (568)
Q Consensus       253 ~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~-~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~  330 (568)
                      |+.|+ |++||++.  ..+..+.+|...|++++|+|++. +|++++.|++|+|||++...        ..     ..+..
T Consensus       227 g~~dg~i~~wd~~~--~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~--------~~-----~~~~~  291 (435)
T 4e54_B          227 GDNVGNVILLNMDG--KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR--------GK-----ASFLY  291 (435)
T ss_dssp             ECSSSBEEEEESSS--CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC--------SS-----SCCSB
T ss_pred             EeCCCcEeeeccCc--ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccc--------cc-----ceEEE
Confidence            99999 99999975  56777889999999999999986 67788999999999997533        11     12234


Q ss_pred             EecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee
Q 008363          331 VNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE  370 (568)
Q Consensus       331 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~  370 (568)
                      ..+|...|++++|+|++.+|++++.||.|+|||+.++...
T Consensus       292 ~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~  331 (435)
T 4e54_B          292 SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCP  331 (435)
T ss_dssp             CCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSE
T ss_pred             eeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccc
Confidence            5679999999999999999999999999999999876543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.97  E-value=3.9e-28  Score=263.30  Aligned_cols=226  Identities=20%  Similarity=0.331  Sum_probs=195.6

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccC
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEG  156 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~  156 (568)
                      .+....+|.. .+++++|+|++          .+|++++.||.|++|+.. ++.+..+..|..              +.+
T Consensus       336 ~~~~~~~~~~-~v~~~~~s~~g----------~~l~~~~~dg~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~  403 (577)
T 2ymu_A          336 HLQTLTGHSS-SVWGVAFSPDG----------QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASA  403 (577)
T ss_dssp             EEEEECCCSS-CEEEEEECTTS----------SEEEEEETTSEEEEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred             eeEEEeCCCC-CEEEEEECCCC----------CEEEEEeCCCEEEEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEE
Confidence            3445567887 45599999999          799999999999999964 566766666544              456


Q ss_pred             CCCceEEEeecce-ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEE
Q 008363          157 TDPRFVKLEPVFR-CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAV  235 (568)
Q Consensus       157 ~~~~~v~~~~~~~-~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v  235 (568)
                      +.++.+++|+... +...+.+|...| ++++|+  |++.+|++++.|++|++||+. +      +.+..+.+|...|.++
T Consensus       404 ~~d~~v~~~~~~~~~~~~~~~~~~~v-~~~~~s--~d~~~l~~~~~d~~v~~w~~~-~------~~~~~~~~~~~~v~~~  473 (577)
T 2ymu_A          404 SDDKTVKLWNRNGQLLQTLTGHSSSV-WGVAFS--PDDQTIASASDDKTVKLWNRN-G------QLLQTLTGHSSSVRGV  473 (577)
T ss_dssp             ETTSEEEEECTTCCEEEEEECCSSCE-EEEEEC--TTSSEEEEEETTSEEEEEETT-S------CEEEEEECCSSCEEEE
T ss_pred             eCCCEEEEEeCCCCEEEEecCCCCCe-EEEEEC--CCCCEEEEEcCCCEEEEEECC-C------CEEEEEcCCCCCEEEE
Confidence            6788899998543 455667899999 999999  889999999999999999964 2      5778889999999999


Q ss_pred             EEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCC
Q 008363          236 SWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVP  314 (568)
Q Consensus       236 ~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~  314 (568)
                      +|+|++      .+||+++.|+ |++||.. + ..+..+.+|...|++|+|+|++++|++++.||.|+|||+        
T Consensus       474 ~~spd~------~~las~~~d~~i~iw~~~-~-~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~--------  537 (577)
T 2ymu_A          474 AFSPDG------QTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR--------  537 (577)
T ss_dssp             EECTTS------CEEEEEETTSEEEEEETT-S-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT--------
T ss_pred             EEcCCC------CEEEEEeCCCEEEEEcCC-C-CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC--------
Confidence            999999      8999999999 9999964 4 677888999999999999999999999999999999997        


Q ss_pred             CCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363          315 ATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQ  363 (568)
Q Consensus       315 ~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd  363 (568)
                       +|        +++..+.+|...|++++|+|++++|+|++.|++|++||
T Consensus       538 -~~--------~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          538 -NG--------QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             -TS--------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             -CC--------CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence             24        33578999999999999999999999999999999997

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.97  E-value=2e-27  Score=238.48  Aligned_cols=266  Identities=13%  Similarity=0.194  Sum_probs=213.6

Q ss_pred             cceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCcee---eEEe--ccCC----------
Q 008363           89 LPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTM---KAIY--LSSM----------  153 (568)
Q Consensus        89 ~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~---~~l~--~~~~----------  153 (568)
                      ........+|.+ .+.+++|+|++          .+|++++ ||.|+||++.++...   ..+.  .+..          
T Consensus        41 ~~~~~~~~~h~~-~v~~~~~~~~~----------~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  108 (337)
T 1gxr_A           41 HARQINTLNHGE-VVCAVTISNPT----------RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD  108 (337)
T ss_dssp             EEEEEEEECCSS-CCCEEEECSSS----------SEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT
T ss_pred             ccccceeccCCC-ceEEEEEecCC----------cEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC
Confidence            344555668888 55599999999          7999998 999999999875432   2222  2221          


Q ss_pred             ----ccCCCCceEEEeecce----ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe
Q 008363          154 ----KEGTDPRFVKLEPVFR----CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF  225 (568)
Q Consensus       154 ----~~~~~~~~v~~~~~~~----~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~  225 (568)
                          +.++.++.+.+|+...    ......+|...| .+++|+  |++.+|++++.||.|++||+.+.      .++..+
T Consensus       109 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i-~~~~~~--~~~~~l~~~~~dg~v~~~d~~~~------~~~~~~  179 (337)
T 1gxr_A          109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC-YALAIS--PDSKVCFSCCSDGNIAVWDLHNQ------TLVRQF  179 (337)
T ss_dssp             SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCE-EEEEEC--TTSSEEEEEETTSCEEEEETTTT------EEEEEE
T ss_pred             CCEEEEEcCCCcEEEEECCCCCcceeeecccCCCce-EEEEEC--CCCCEEEEEeCCCcEEEEeCCCC------ceeeee
Confidence                4566788899998765    334556788888 999999  78999999999999999999876      788899


Q ss_pred             eCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 008363          226 SADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIV  304 (568)
Q Consensus       226 ~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lw  304 (568)
                      ..|...|.+++|+|++      .+|++++.|+ |++||+++. ..+..+ .|...+.+++|+|++++|++++.|+.|++|
T Consensus       180 ~~~~~~i~~~~~~~~~------~~l~~~~~dg~i~~~d~~~~-~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~  251 (337)
T 1gxr_A          180 QGHTDGASCIDISNDG------TKLWTGGLDNTVRSWDLREG-RQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVL  251 (337)
T ss_dssp             CCCSSCEEEEEECTTS------SEEEEEETTSEEEEEETTTT-EEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             ecccCceEEEEECCCC------CEEEEEecCCcEEEEECCCC-ceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEE
Confidence            9999999999999998      8999999999 999999987 555555 467889999999999999999999999999


Q ss_pred             EccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeee
Q 008363          305 SLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCG  384 (568)
Q Consensus       305 d~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  384 (568)
                      |++.        ++         ...+..|...|.+++|+|++.+|++++.||.|++|++.++.......  ......+.
T Consensus       252 ~~~~--------~~---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~--~~~~v~~~  312 (337)
T 1gxr_A          252 HVNK--------PD---------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSC  312 (337)
T ss_dssp             ETTS--------SC---------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEE
T ss_pred             ECCC--------CC---------eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec--CCCcEEEE
Confidence            9954        22         24677899999999999999999999999999999998876553311  12234555


Q ss_pred             cccCCCCceEEcccCCCC
Q 008363          385 SVTEDESAITVNTPLDNT  402 (568)
Q Consensus       385 s~~~~~~~i~~~~~~~~~  402 (568)
                      .+++++..+.++.....+
T Consensus       313 ~~s~~~~~l~~~~~dg~i  330 (337)
T 1gxr_A          313 DISVDDKYIVTGSGDKKA  330 (337)
T ss_dssp             EECTTSCEEEEEETTSCE
T ss_pred             EECCCCCEEEEecCCCeE
Confidence            788888888776654433

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.96  E-value=1.6e-29  Score=259.14  Aligned_cols=250  Identities=10%  Similarity=0.115  Sum_probs=186.5

Q ss_pred             cCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC--ceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363           98 HNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL--RTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC  175 (568)
Q Consensus        98 h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~--~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~  175 (568)
                      |.+ .|++++|+|++          .+||+|+.||.|+|||+.++  +.+..+                          .
T Consensus        10 ~~~-~v~~~~~s~~g----------~~l~~~~~d~~i~iw~~~~~~~~~~~~~--------------------------~   52 (377)
T 3dwl_C           10 LPK-PSYEHAFNSQR----------TEFVTTTATNQVELYEQDGNGWKHARTF--------------------------S   52 (377)
T ss_dssp             CSS-CCSCCEECSSS----------SEEECCCSSSCBCEEEEETTEEEECCCB--------------------------C
T ss_pred             CCC-cEEEEEECCCC----------CEEEEecCCCEEEEEEccCCceEEEEEE--------------------------e
Confidence            445 55699999999          89999999999999999986  444443                          7


Q ss_pred             CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363          176 GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH  255 (568)
Q Consensus       176 ~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~  255 (568)
                      +|...| ++++|+  |++++|++|+.||+|++||+.+..   ...+...+.+|...|.+++|+|++      .+|++++.
T Consensus        53 ~h~~~v-~~~~~s--~~~~~l~s~s~d~~v~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~~  120 (377)
T 3dwl_C           53 DHDKIV-TCVDWA--PKSNRIVTCSQDRNAYVYEKRPDG---TWKQTLVLLRLNRAATFVRWSPNE------DKFAVGSG  120 (377)
T ss_dssp             CCSSCE-EEEEEC--TTTCCEEEEETTSSEEEC---------CCCCEEECCCCSSCEEEEECCTTS------SCCEEEES
T ss_pred             cCCceE-EEEEEe--CCCCEEEEEeCCCeEEEEEcCCCC---ceeeeeEecccCCceEEEEECCCC------CEEEEEec
Confidence            899999 999999  889999999999999999998762   023677788999999999999998      89999999


Q ss_pred             CC-EEEEECCCCCc--ceeeeCC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccC--ccccceE
Q 008363          256 GG-LKFWDIRDPFR--PLWDIHP-APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAG--TKQQGLH  329 (568)
Q Consensus       256 d~-v~lwD~~~~~~--~~~~~~~-h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~--~~~~~l~  329 (568)
                      |+ |++||++....  ....+.. |...|++++|+|++++|++++.|+.|++||++....+..........  ....++.
T Consensus       121 d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (377)
T 3dwl_C          121 ARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCA  200 (377)
T ss_dssp             SSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEE
T ss_pred             CCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhh
Confidence            99 99999997732  4566776 99999999999999999999999999999996422110000000000  0113344


Q ss_pred             EEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee----eccCCCCCcceeeeecccCCCCceEEccc
Q 008363          330 LVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV----EKDHSRNRPMHFLCGSVTEDESAITVNTP  398 (568)
Q Consensus       330 ~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~s~~~~~~~i~~~~~  398 (568)
                      .+ +|...|++++|+|++.+|++++.||.|++||+.++..    ......+ ...+.+.++++++..++.+..
T Consensus       201 ~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~  271 (377)
T 3dwl_C          201 EY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS-QLPLRSLLWANESAIVAAGYN  271 (377)
T ss_dssp             CC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS-SSCEEEEEEEETTEEEEEESS
T ss_pred             cc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC-CCceEEEEEcCCCCEEEEEcC
Confidence            55 8999999999999999999999999999999987764    2221222 223456678888877776643

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.96  E-value=8.5e-28  Score=260.63  Aligned_cols=261  Identities=17%  Similarity=0.257  Sum_probs=213.8

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCC
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGT  157 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~  157 (568)
                      +....+|.+ .+++++|+|++          .+|++++.||.|++||+.. ..+..+.++..              +.+.
T Consensus       296 ~~~~~~h~~-~v~~~~~~~~~----------~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  363 (577)
T 2ymu_A          296 LQTLTGHSS-SVWGVAFSPDG----------QTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASAS  363 (577)
T ss_dssp             EEEECCCSS-CEEEEEECTTS----------SEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEecCCC-CeEEEEECCCC----------CEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEe
Confidence            344567888 55699999999          7999999999999999876 34444544433              4566


Q ss_pred             CCceEEEeecce-ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEE
Q 008363          158 DPRFVKLEPVFR-CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVS  236 (568)
Q Consensus       158 ~~~~v~~~~~~~-~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~  236 (568)
                      .++.+++|+... +...+.+|...| .+++|+  |++.+|++|+.|+.|++||.. +      +.+..+.+|...|.+++
T Consensus       364 ~dg~v~~~~~~~~~~~~~~~~~~~v-~~~~~s--~dg~~l~~~~~d~~v~~~~~~-~------~~~~~~~~~~~~v~~~~  433 (577)
T 2ymu_A          364 DDKTVKLWNRNGQLLQTLTGHSSSV-RGVAFS--PDGQTIASASDDKTVKLWNRN-G------QLLQTLTGHSSSVWGVA  433 (577)
T ss_dssp             TTSEEEEEETTCCEEEEEECCSSCE-EEEEEC--TTSSCEEEEETTSEEEEECTT-C------CEEEEEECCSSCEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEecCCCCCe-EEEEEC--CCCCEEEEEeCCCEEEEEeCC-C------CEEEEecCCCCCeEEEE
Confidence            788899998543 455667899999 999999  899999999999999999964 2      67788899999999999


Q ss_pred             EccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCC
Q 008363          237 WAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPA  315 (568)
Q Consensus       237 ~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~  315 (568)
                      |+|++      .+|++++.|+ |++||+. . ..+..+.+|...|++++|+|++++|++++.|+.|++||.         
T Consensus       434 ~s~d~------~~l~~~~~d~~v~~w~~~-~-~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~---------  496 (577)
T 2ymu_A          434 FSPDD------QTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR---------  496 (577)
T ss_dssp             ECTTS------SEEEEEETTSEEEEEETT-S-CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET---------
T ss_pred             ECCCC------CEEEEEcCCCEEEEEECC-C-CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC---------
Confidence            99998      8999999999 9999975 3 667788899999999999999999999999999999997         


Q ss_pred             CCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEE
Q 008363          316 TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITV  395 (568)
Q Consensus       316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~  395 (568)
                      +|+        .+..+.+|...|++++|+|++++|++++.||.|++||+.. ........+. ..+.+..+++++..|+.
T Consensus       497 ~~~--------~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~-~~~~~~~~h~-~~v~~~~fs~dg~~l~s  566 (577)
T 2ymu_A          497 NGQ--------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHS-SSVWGVAFSPDGQTIAS  566 (577)
T ss_dssp             TSC--------EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS-CEEEEEECCS-SCEEEEEECTTSSCEEE
T ss_pred             CCC--------EEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC-CEEEEEcCCC-CCEEEEEEcCCCCEEEE
Confidence            243        3578899999999999999999999999999999999753 3333323322 33456678999988887


Q ss_pred             cccCCC
Q 008363          396 NTPLDN  401 (568)
Q Consensus       396 ~~~~~~  401 (568)
                      ++....
T Consensus       567 ~~~D~~  572 (577)
T 2ymu_A          567 ASSDKT  572 (577)
T ss_dssp             EETTSC
T ss_pred             EeCCCE
Confidence            655443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.96  E-value=1.2e-27  Score=238.93  Aligned_cols=236  Identities=16%  Similarity=0.287  Sum_probs=193.8

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS  171 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~  171 (568)
                      .....+|... +.+++|+|++          .+|++|+.||.|+|||+.+++++..+                       
T Consensus        58 ~~~~~~h~~~-v~~~~~~~~~----------~~l~s~~~d~~i~vwd~~~~~~~~~~-----------------------  103 (312)
T 4ery_A           58 EKTISGHKLG-ISDVAWSSDS----------NLLVSASDDKTLKIWDVSSGKCLKTL-----------------------  103 (312)
T ss_dssp             EEEECCCSSC-EEEEEECTTS----------SEEEEEETTSEEEEEETTTCCEEEEE-----------------------
T ss_pred             chhhccCCCc-eEEEEEcCCC----------CEEEEECCCCEEEEEECCCCcEEEEE-----------------------
Confidence            3345678884 5599999999          89999999999999999998888776                       


Q ss_pred             ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363          172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la  251 (568)
                         .+|...| .+++|+  |++.+|++|+.||+|++||+.++      .++..+..|...|.+++|+|++      .+|+
T Consensus       104 ---~~~~~~v-~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~------~~l~  165 (312)
T 4ery_A          104 ---KGHSNYV-FCCNFN--PQSNLIVSGSFDESVRIWDVKTG------KCLKTLPAHSDPVSAVHFNRDG------SLIV  165 (312)
T ss_dssp             ---ECCSSCE-EEEEEC--SSSSEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTS------SEEE
T ss_pred             ---cCCCCCE-EEEEEc--CCCCEEEEEeCCCcEEEEECCCC------EEEEEecCCCCcEEEEEEcCCC------CEEE
Confidence               7788888 999999  88999999999999999999876      7888899999999999999998      8999


Q ss_pred             EEcCCC-EEEEECCCCCcceeee-CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363          252 TAGHGG-LKFWDIRDPFRPLWDI-HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH  329 (568)
Q Consensus       252 s~s~d~-v~lwD~~~~~~~~~~~-~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~  329 (568)
                      +++.|+ |++||+++. ..+..+ ..+...+..++|+|++++|++++.|+.|++||++.        +        +++.
T Consensus       166 ~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~--------~--------~~~~  228 (312)
T 4ery_A          166 SSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK--------G--------KCLK  228 (312)
T ss_dssp             EEETTSCEEEEETTTC-CEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT--------T--------EEEE
T ss_pred             EEeCCCcEEEEECCCC-ceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC--------C--------cEEE
Confidence            999999 999999987 555444 45677899999999999999999999999999954        3        2345


Q ss_pred             EEecCCCCEEE--EEEe-cCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363          330 LVNCSSFAIWS--VQVS-RLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNT  397 (568)
Q Consensus       330 ~~~~h~~~V~~--l~~s-p~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~  397 (568)
                      .+.+|...+.+  ..|+ +++.+|++++.||.|++||+.++........+.. ...+.++.+++..+++.+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~~  298 (312)
T 4ery_A          229 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD-VVISTACHPTENIIASAA  298 (312)
T ss_dssp             EECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSS-CEEEEEECSSSSEEEEEE
T ss_pred             EEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCC-cEEEEeecCcCCceEEEE
Confidence            77777754332  2344 5689999999999999999998877665444332 344556777777776654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.9e-27  Score=240.32  Aligned_cols=241  Identities=15%  Similarity=0.197  Sum_probs=200.6

Q ss_pred             CcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeec
Q 008363           88 ALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPV  167 (568)
Q Consensus        88 ~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~  167 (568)
                      ...+...+.+|.+ .|.+++|+|++          .+|++|+.||.|+|||+.+++.+..+                   
T Consensus        21 ~~~~~~~l~~h~~-~v~~~~~s~~~----------~~l~~~~~dg~i~vwd~~~~~~~~~~-------------------   70 (369)
T 3zwl_B           21 SHMKAIKLTGHER-PLTQVKYNKEG----------DLLFSCSKDSSASVWYSLNGERLGTL-------------------   70 (369)
T ss_dssp             CSEEEEEEECCSS-CEEEEEECTTS----------CEEEEEESSSCEEEEETTTCCEEEEE-------------------
T ss_pred             cccccEEEEEeec-eEEEEEEcCCC----------CEEEEEeCCCEEEEEeCCCchhhhhh-------------------
Confidence            4456666789999 55599999999          79999999999999999998888776                   


Q ss_pred             ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363          168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA  247 (568)
Q Consensus       168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~  247 (568)
                             .+|...| .+++|+  |++.+|++++.||+|++||+.++      .++..+. |...|.+++|+|++      
T Consensus        71 -------~~h~~~v-~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~-~~~~v~~~~~~~~~------  127 (369)
T 3zwl_B           71 -------DGHTGTI-WSIDVD--CFTKYCVTGSADYSIKLWDVSNG------QCVATWK-SPVPVKRVEFSPCG------  127 (369)
T ss_dssp             -------CCCSSCE-EEEEEC--TTSSEEEEEETTTEEEEEETTTC------CEEEEEE-CSSCEEEEEECTTS------
T ss_pred             -------hhcCCcE-EEEEEc--CCCCEEEEEeCCCeEEEEECCCC------cEEEEee-cCCCeEEEEEccCC------
Confidence                   7888999 999999  78999999999999999999876      6777776 88999999999999      


Q ss_pred             cEEEEEcCC-----C-EEEEECCCCCc----------ceeeeCCCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEEcccc
Q 008363          248 NVILTAGHG-----G-LKFWDIRDPFR----------PLWDIHPAPK--FIYGLDWLPDPGCVILSFDDGAMRIVSLLKA  309 (568)
Q Consensus       248 ~~las~s~d-----~-v~lwD~~~~~~----------~~~~~~~h~~--~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~  309 (568)
                      .+|++++.+     + |++||+.....          .+..+..|..  .+.+++|+|++++|++++.||.|++||++..
T Consensus       128 ~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  207 (369)
T 3zwl_B          128 NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN  207 (369)
T ss_dssp             SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT
T ss_pred             CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence            899999888     8 99999987631          3344455665  8999999999999999999999999999541


Q ss_pred             ccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCC
Q 008363          310 AYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTED  389 (568)
Q Consensus       310 ~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~  389 (568)
                             +        ..+..+..|...|.+++|+|++.+|++++.||.|++||+.++........  .....+..++++
T Consensus       208 -------~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~  270 (369)
T 3zwl_B          208 -------Y--------EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYET--DCPLNTAVITPL  270 (369)
T ss_dssp             -------T--------EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--SSCEEEEEECSS
T ss_pred             -------c--------EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecC--CCCceeEEecCC
Confidence                   2        34578889999999999999999999999999999999988766554331  222344467777


Q ss_pred             CCceEEccc
Q 008363          390 ESAITVNTP  398 (568)
Q Consensus       390 ~~~i~~~~~  398 (568)
                      +..+.++..
T Consensus       271 ~~~l~~~~~  279 (369)
T 3zwl_B          271 KEFIILGGG  279 (369)
T ss_dssp             SSEEEEEEC
T ss_pred             CceEEEeec
Confidence            777766543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.96  E-value=1e-27  Score=266.53  Aligned_cols=237  Identities=14%  Similarity=0.156  Sum_probs=191.5

Q ss_pred             EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363           94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML  173 (568)
Q Consensus        94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~  173 (568)
                      .+.+|.+ .|++|+|+|++.         .+|++|+.||+|+||++.........                     +...
T Consensus       377 ~l~~H~~-~V~~v~~~~~~~---------~~l~s~s~D~~i~~W~~~~~~~~~~~---------------------~~~~  425 (694)
T 3dm0_A          377 TMRAHTD-MVTAIATPIDNA---------DIIVSASRDKSIILWKLTKDDKAYGV---------------------AQRR  425 (694)
T ss_dssp             EEECCSS-CEEEEECCTTCC---------SEEEEEETTSEEEEEECCCSTTCSCE---------------------EEEE
T ss_pred             hcccCCc-eeEEEEecCCCC---------CEEEEEeCCCcEEEEEccCCCccccc---------------------ccce
Confidence            4578999 555999999865         79999999999999999863221000                     0111


Q ss_pred             ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363          174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA  253 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~  253 (568)
                      +.+|...| .+++|+  +++.+|++|+.||+|+|||+.++      ..+..+.+|...|.+++|+|++      .+|+++
T Consensus       426 ~~~h~~~v-~~v~~s--~~g~~l~sgs~Dg~v~vwd~~~~------~~~~~~~~h~~~v~~~~~s~~~------~~l~s~  490 (694)
T 3dm0_A          426 LTGHSHFV-EDVVLS--SDGQFALSGSWDGELRLWDLAAG------VSTRRFVGHTKDVLSVAFSLDN------RQIVSA  490 (694)
T ss_dssp             EECCSSCE-EEEEEC--TTSSEEEEEETTSEEEEEETTTT------EEEEEEECCSSCEEEEEECTTS------SCEEEE
T ss_pred             ecCCCCcE-EEEEEC--CCCCEEEEEeCCCcEEEEECCCC------cceeEEeCCCCCEEEEEEeCCC------CEEEEE
Confidence            27899999 999999  88999999999999999999876      7888999999999999999999      899999


Q ss_pred             cCCC-EEEEECCCCCcceee---eCCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccc
Q 008363          254 GHGG-LKFWDIRDPFRPLWD---IHPAPKFIYGLDWLPDP--GCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQG  327 (568)
Q Consensus       254 s~d~-v~lwD~~~~~~~~~~---~~~h~~~i~~l~~sp~~--~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~  327 (568)
                      +.|+ |++||+... .....   ..+|...|++++|+|++  ..|++++.|++|++||++.        +        +.
T Consensus       491 s~D~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~--------~--------~~  553 (694)
T 3dm0_A          491 SRDRTIKLWNTLGE-CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN--------C--------KL  553 (694)
T ss_dssp             ETTSCEEEECTTSC-EEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT--------C--------CE
T ss_pred             eCCCEEEEEECCCC-cceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC--------C--------cE
Confidence            9999 999998754 22221   24788999999999987  5899999999999999954        3        23


Q ss_pred             eEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEE
Q 008363          328 LHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITV  395 (568)
Q Consensus       328 l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~  395 (568)
                      +..+.+|...|++++|+|++.+|++++.||.|++||+.++........+.  .+.+.++++++..+..
T Consensus       554 ~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~  619 (694)
T 3dm0_A          554 RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS--VIHALCFSPNRYWLCA  619 (694)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSS--CEEEEEECSSSSEEEE
T ss_pred             EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCC--cEEEEEEcCCCcEEEE
Confidence            46888999999999999999999999999999999999887655433222  2444456666655544

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.96  E-value=1.5e-28  Score=246.24  Aligned_cols=221  Identities=19%  Similarity=0.300  Sum_probs=174.8

Q ss_pred             EEEeeccCCceeeEEEEccC--CCCcccccCcccEEEEEeCCCcEEEEECCCCc--eeeEEeccCCccCCCCceEEEeec
Q 008363           92 VVLCLAHNGKVAWDVKWKPY--NAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR--TMKAIYLSSMKEGTDPRFVKLEPV  167 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~--~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~--~~~~l~~~~~~~~~~~~~v~~~~~  167 (568)
                      +..+.+|.+ .|++++|+|+  +          .+|++|+.|++|+|||+.++.  ....+                   
T Consensus        50 ~~~l~gH~~-~V~~v~~~~~~~~----------~~l~s~s~D~~v~iWd~~~~~~~~~~~~-------------------   99 (316)
T 3bg1_A           50 IADLRGHEG-PVWQVAWAHPMYG----------NILASCSYDRKVIIWREENGTWEKSHEH-------------------   99 (316)
T ss_dssp             EEEEECCSS-CEEEEEECCGGGS----------SCEEEEETTSCEEEECCSSSCCCEEEEE-------------------
T ss_pred             EEEEcCCCc-cEEEEEeCCCCCC----------CEEEEEECCCEEEEEECCCCcceEEEEc-------------------
Confidence            345678998 5669999864  5          799999999999999998764  33333                   


Q ss_pred             ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCC----
Q 008363          168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESD----  243 (568)
Q Consensus       168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~----  243 (568)
                             .+|...| .+++|+|..++.+|++|+.||+|++||+.....   ......+.+|...|.+++|+|+...    
T Consensus       100 -------~~h~~~V-~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  168 (316)
T 3bg1_A          100 -------AGHDSSV-NSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ---WEVKKINNAHTIGCNAVSWAPAVVPGSLI  168 (316)
T ss_dssp             -------CCCSSCC-CEEEECCTTTCSCEEEECSSSCEEEEEECSSSC---EEECCBTTSSSSCBCCCEECCCCCC----
T ss_pred             -------cCCCCce-EEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC---cceeeeeccccCCcceEEEccccCCcccc
Confidence                   6899999 999999544488999999999999999985411   1223456789999999999997300    


Q ss_pred             -------CCCCcEEEEEcCCC-EEEEECCCCC--cceeeeCCCCCCeEEEEEcCCC----CEEEEEeCCCcEEEEEcccc
Q 008363          244 -------SDSANVILTAGHGG-LKFWDIRDPF--RPLWDIHPAPKFIYGLDWLPDP----GCVILSFDDGAMRIVSLLKA  309 (568)
Q Consensus       244 -------~~~~~~las~s~d~-v~lwD~~~~~--~~~~~~~~h~~~i~~l~~sp~~----~~l~s~~~dg~I~lwd~~~~  309 (568)
                             .....+|++|+.|+ |++||++...  .++..+.+|...|++++|+|++    .+|++++.|++|+|||++..
T Consensus       169 ~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~  248 (316)
T 3bg1_A          169 DHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDA  248 (316)
T ss_dssp             --CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSST
T ss_pred             ccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCc
Confidence                   00026899999999 9999997542  3567788999999999999987    88999999999999999642


Q ss_pred             ccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          310 AYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       310 ~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      .     .+..       ....+..|...|++++|+|++.+|++++.||+|+||+..
T Consensus       249 ~-----~~~~-------~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          249 S-----SNTW-------SPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             T-----CCCC-------BCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             c-----ccch-------hhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            1     0111       113556789999999999999999999999999999985

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=3.3e-27  Score=235.26  Aligned_cols=267  Identities=18%  Similarity=0.257  Sum_probs=203.2

Q ss_pred             eeeccCCccceeecccCcccCCCCCcccCCCCCCCcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCc
Q 008363           54 QIYHGSERDSAVCDVLGDFLSKPSLVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGS  133 (568)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~  133 (568)
                      ++..|+..+ .++.+.|+-....+.      ......+.....+|.. .|.+++|+|++          ++||+|+.||+
T Consensus        29 ~~l~WS~~~-~lAvg~D~tV~iWd~------~tg~~~~~~~~~~~~~-~V~~v~~~~~~----------~~l~sgs~Dg~   90 (318)
T 4ggc_A           29 NLVDWSSGN-VLAVALDNSVYLWSA------SSGDILQLLQMEQPGE-YISSVAWIKEG----------NYLAVGTSSAE   90 (318)
T ss_dssp             BCEEECTTS-EEEEEETTEEEEEET------TTCCEEEEEECCSTTC-CEEEEEECTTS----------SEEEEEETTSE
T ss_pred             eEEEECCCC-EEEEEeCCEEEEEEC------CCCCEEEEEEecCCCC-eEEEEEECCCC----------CEEEEEECCCc
Confidence            455676544 444444443322222      1112223333446666 56699999999          89999999999


Q ss_pred             EEEEECCCCceeeEEeccCC------------ccCCCCceEEEeecce---ecccccCCcCccceEEEEccCCCCCEEEE
Q 008363          134 LEVWEVPLLRTMKAIYLSSM------------KEGTDPRFVKLEPVFR---CSMLKCGGTQSIPLTMEWSTSPPHDYLLA  198 (568)
Q Consensus       134 V~iwd~~~~~~~~~l~~~~~------------~~~~~~~~v~~~~~~~---~~~~~~~h~~~V~~~v~~s~~~~g~~l~s  198 (568)
                      |+||++.+++++..+.+|..            +.++.+..+.++....   ......+|...+ .++.|.  +++.+|++
T Consensus        91 v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~l~s  167 (318)
T 4ggc_A           91 VQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV-CGLRWA--PDGRHLAS  167 (318)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCE-EEEEEC--TTSSEEEE
T ss_pred             EEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCce-EEEEEc--CCCCEEEE
Confidence            99999999999999888765            4556677777776654   334567899998 999998  88999999


Q ss_pred             EeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE--EEEcCCC-EEEEECCCCCcceeeeCC
Q 008363          199 GCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI--LTAGHGG-LKFWDIRDPFRPLWDIHP  275 (568)
Q Consensus       199 gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l--as~s~d~-v~lwD~~~~~~~~~~~~~  275 (568)
                      ++.||+|++||+.++..  ..........|.+.|.+++++|.+.     .++  ++++.++ |++||.+.. ..... ..
T Consensus       168 ~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~~~i~lwd~~~~-~~~~~-~~  238 (318)
T 4ggc_A          168 GGNDNLVNVWPSAPGEG--GWVPLQTFTQHQGAVKAVAWCPWQS-----NVLATGGGTSDRHIRIWNVCSG-ACLSA-VD  238 (318)
T ss_dssp             EETTSCEEEEESSCBTT--BSCCSEEECCCCSCEEEEEECTTST-----TEEEEEECTTTCEEEEEETTTC-CEEEE-EE
T ss_pred             EecCcceeEEECCCCcc--cccceeeecccCCceEEEEecCCCC-----cEEEEEecCCCCEEEEEecccc-ccccc-cc
Confidence            99999999999986532  1234556678899999999999872     554  3556677 999999876 33333 34


Q ss_pred             CCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEE
Q 008363          276 APKFIYGLDWLPDPGCVILSF--DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYC  353 (568)
Q Consensus       276 h~~~i~~l~~sp~~~~l~s~~--~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~  353 (568)
                      +...+..+.|+|++..+++++  .|+.|++||+++        ++        ++..+.+|.+.|++++|+|++.+|+||
T Consensus       239 ~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~--------~~--------~~~~l~gH~~~V~~l~~spdg~~l~S~  302 (318)
T 4ggc_A          239 AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT--------MA--------KVAELKGHTSRVLSLTMSPDGATVASA  302 (318)
T ss_dssp             CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT--------CC--------EEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred             ceeeeeeeeecccccceEEEEEcCCCEEEEEECCC--------Cc--------EEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence            567799999999999988765  699999999953        53        357899999999999999999999999


Q ss_pred             eCCCeEEEEEcCC
Q 008363          354 SADGTVHRFQLTA  366 (568)
Q Consensus       354 s~Dg~v~iwd~~~  366 (568)
                      +.||+|+|||+..
T Consensus       303 s~D~~v~iWd~~~  315 (318)
T 4ggc_A          303 AADETLRLWRCFE  315 (318)
T ss_dssp             ETTTEEEEECCSC
T ss_pred             ecCCeEEEEECCC
Confidence            9999999999853

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.96  E-value=1.3e-27  Score=247.67  Aligned_cols=234  Identities=17%  Similarity=0.288  Sum_probs=197.3

Q ss_pred             ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------ccCCCCceEEE
Q 008363           97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------KEGTDPRFVKL  164 (568)
Q Consensus        97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------~~~~~~~~v~~  164 (568)
                      .|.+ .|.+++|+|++          .+|++|+.||.|+|||+.+++.+..+.+|..            +.++.++.+.+
T Consensus       132 ~~~~-~v~~v~~s~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i  200 (401)
T 4aez_A          132 DEST-YVASVKWSHDG----------SFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHH  200 (401)
T ss_dssp             CTTC-CEEEEEECTTS----------SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEE
T ss_pred             CCCC-CEEEEEECCCC----------CEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEE
Confidence            3666 56699999999          7999999999999999999998888877655            56778899999


Q ss_pred             eecce---ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCC
Q 008363          165 EPVFR---CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAE  241 (568)
Q Consensus       165 ~~~~~---~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~  241 (568)
                      |+...   ....+.+|...| .+++|+  |++.+|++|+.||.|++||+.+.      .++..+..|...|.+++|+|++
T Consensus       201 ~d~~~~~~~~~~~~~~~~~v-~~~~~~--~~~~~l~s~~~d~~v~iwd~~~~------~~~~~~~~~~~~v~~~~~~p~~  271 (401)
T 4aez_A          201 HDVRIANHQIGTLQGHSSEV-CGLAWR--SDGLQLASGGNDNVVQIWDARSS------IPKFTKTNHNAAVKAVAWCPWQ  271 (401)
T ss_dssp             EETTSSSCEEEEEECCSSCE-EEEEEC--TTSSEEEEEETTSCEEEEETTCS------SEEEEECCCSSCCCEEEECTTS
T ss_pred             EecccCcceeeEEcCCCCCe-eEEEEc--CCCCEEEEEeCCCeEEEccCCCC------CccEEecCCcceEEEEEECCCC
Confidence            99863   445667899999 999999  78999999999999999999976      7888888999999999999987


Q ss_pred             CCCCCCcEEEEEc--CCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEccccccCCCCC
Q 008363          242 SDSDSANVILTAG--HGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF--DDGAMRIVSLLKAAYDVPAT  316 (568)
Q Consensus       242 ~~~~~~~~las~s--~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~--~dg~I~lwd~~~~~~~~~~~  316 (568)
                           ..++++++  .|+ |++||++++ .++..+. +...|++++|+|++++|++++  .||.|++||++.        
T Consensus       272 -----~~ll~~~~gs~d~~i~i~d~~~~-~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~--------  336 (401)
T 4aez_A          272 -----SNLLATGGGTMDKQIHFWNAATG-ARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS--------  336 (401)
T ss_dssp             -----TTEEEEECCTTTCEEEEEETTTC-CEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET--------
T ss_pred             -----CCEEEEecCCCCCEEEEEECCCC-CEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC--------
Confidence                 37888876  688 999999987 6666664 567899999999999999954  799999999954        


Q ss_pred             CCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          317 GKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       317 g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                      +..      ..+..+.+|...|.+++|+|++.+|++++.||.|++|++.++....
T Consensus       337 ~~~------~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~  385 (401)
T 4aez_A          337 SGL------TKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK  385 (401)
T ss_dssp             TEE------EEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-----
T ss_pred             ccc------eeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence            222      2334577899999999999999999999999999999998765543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1e-27  Score=248.58  Aligned_cols=235  Identities=18%  Similarity=0.302  Sum_probs=197.9

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC----CceeeEEeccCC---------------cc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL----LRTMKAIYLSSM---------------KE  155 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~----~~~~~~l~~~~~---------------~~  155 (568)
                      ...|.. .+.+++|+|++          .+|++|+.||.|+||++.+    ...+..+.+|..               +.
T Consensus        63 ~~~~~~-~v~~~~~s~~~----------~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  131 (416)
T 2pm9_A           63 SLQVDS-KFNDLDWSHNN----------KIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLAS  131 (416)
T ss_dssp             CCCCSS-CEEEEEECSSS----------SCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEE
T ss_pred             EEecCC-ceEEEEECCCC----------CeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEE
Confidence            346777 55599999999          7999999999999999987    346666655543               45


Q ss_pred             CCCCceEEEeecceec-----------ccccCCcCccceEEEEccCCC-CCEEEEEeCCCeEEEEEccCCCCCCCCceeE
Q 008363          156 GTDPRFVKLEPVFRCS-----------MLKCGGTQSIPLTMEWSTSPP-HDYLLAGCHDGTVALWKFVASDSSIDSRPLL  223 (568)
Q Consensus       156 ~~~~~~v~~~~~~~~~-----------~~~~~h~~~V~~~v~~s~~~~-g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~  223 (568)
                      ++.++.+++|+.....           ....+|...| .+++|+  |+ +.+|++|+.||.|++||+.+.      .++.
T Consensus       132 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~--~~~~~~l~~~~~dg~v~iwd~~~~------~~~~  202 (416)
T 2pm9_A          132 GGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV-ISLAWN--QSLAHVFASAGSSNFASIWDLKAK------KEVI  202 (416)
T ss_dssp             ECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC-CEEEEC--SSCTTEEEEESSSSCEEEEETTTT------EEEE
T ss_pred             EcCCCeEEEEECCCCccccccccccccccccCCCCCe-eEEEeC--CCCCcEEEEEcCCCCEEEEECCCC------Ccce
Confidence            6788899999887533           1235788999 999999  66 689999999999999999876      7777


Q ss_pred             EeeCC------CCCeeEEEEccCCCCCCCCcEEEEEcCC----CEEEEECCCCCcceeeeC-CCCCCeEEEEEcC-CCCE
Q 008363          224 CFSAD------TLPIRAVSWAPAESDSDSANVILTAGHG----GLKFWDIRDPFRPLWDIH-PAPKFIYGLDWLP-DPGC  291 (568)
Q Consensus       224 ~~~~h------~~~V~~v~~~p~~~~~~~~~~las~s~d----~v~lwD~~~~~~~~~~~~-~h~~~i~~l~~sp-~~~~  291 (568)
                      .+..|      ...|.+++|+|++     ..+|++++.|    .|++||+++...++..+. +|...|++++|+| ++.+
T Consensus       203 ~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  277 (416)
T 2pm9_A          203 HLSYTSPNSGIKQQLSVVEWHPKN-----STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHL  277 (416)
T ss_dssp             EECCCCCSSCCCCCEEEEEECSSC-----TTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSC
T ss_pred             EEeccccccccCCceEEEEECCCC-----CCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCe
Confidence            77766      7899999999996     2689999887    599999998766777787 8999999999999 9999


Q ss_pred             EEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCCCeee
Q 008363          292 VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTAKAVE  370 (568)
Q Consensus       292 l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~~~~~  370 (568)
                      |++++.||.|++||++.        ++        ++..+.+|...|++++|+|++ .+|++++.||.|++|++.+....
T Consensus       278 l~s~~~dg~v~~wd~~~--------~~--------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~  341 (416)
T 2pm9_A          278 LLSSGRDNTVLLWNPES--------AE--------QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT  341 (416)
T ss_dssp             EEEEESSSEEEEECSSS--------CC--------EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred             EEEEeCCCCEEEeeCCC--------Cc--------cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence            99999999999999953        43        346888999999999999998 89999999999999999876543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=1.4e-27  Score=250.19  Aligned_cols=232  Identities=13%  Similarity=0.133  Sum_probs=185.3

Q ss_pred             ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc-----------eeeEEeccC------------C
Q 008363           97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR-----------TMKAIYLSS------------M  153 (568)
Q Consensus        97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~-----------~~~~l~~~~------------~  153 (568)
                      .|.+ .|.+++|+|++          .+||+|+.||.|+||++.++.           ....+.+|.            .
T Consensus        26 ~~~~-~V~~v~~s~~g----------~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~   94 (447)
T 3dw8_B           26 AEAD-IISTVEFNHSG----------ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEE   94 (447)
T ss_dssp             CGGG-SEEEEEECSSS----------SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECC
T ss_pred             cccC-cEEEEEECCCC----------CEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccC
Confidence            3445 66799999999          899999999999999999866           466677665            1


Q ss_pred             ----------------ccCCCCceEEEeecceec------------------------------------------cccc
Q 008363          154 ----------------KEGTDPRFVKLEPVFRCS------------------------------------------MLKC  175 (568)
Q Consensus       154 ----------------~~~~~~~~v~~~~~~~~~------------------------------------------~~~~  175 (568)
                                      +.++.++.+++|+.....                                          ....
T Consensus        95 ~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (447)
T 3dw8_B           95 KINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN  174 (447)
T ss_dssp             CCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred             ceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence                            445678889999876511                                          1136


Q ss_pred             CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeE-------EeeCCCCCeeEEEEccCCCCCCCCc
Q 008363          176 GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLL-------CFSADTLPIRAVSWAPAESDSDSAN  248 (568)
Q Consensus       176 ~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-------~~~~h~~~V~~v~~~p~~~~~~~~~  248 (568)
                      +|...| ++++|+  |++.+|++| .||+|++||+...     ...+.       .+.+|...|.+++|+|++     +.
T Consensus       175 ~h~~~v-~~~~~~--~~~~~l~s~-~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----~~  240 (447)
T 3dw8_B          175 AHTYHI-NSISIN--SDYETYLSA-DDLRINLWHLEIT-----DRSFNIVDIKPANMEELTEVITAAEFHPNS-----CN  240 (447)
T ss_dssp             CCSSCC-CEEEEC--TTSSEEEEE-CSSEEEEEETTEE-----EEEEEEEECCCSSGGGCCCCEEEEEECSSC-----TT
T ss_pred             CCCcce-EEEEEc--CCCCEEEEe-CCCeEEEEECCCC-----CceeeeeecccccccccCcceEEEEECCCC-----Cc
Confidence            899999 999999  789999999 7999999999843     13333       256899999999999996     37


Q ss_pred             EEEEEcCCC-EEEEECCCCCcc----eeeeCCCCC------------CeEEEEEcCCCCEEEEEeCCCcEEEEEcccccc
Q 008363          249 VILTAGHGG-LKFWDIRDPFRP----LWDIHPAPK------------FIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAY  311 (568)
Q Consensus       249 ~las~s~d~-v~lwD~~~~~~~----~~~~~~h~~------------~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~  311 (568)
                      +|++++.|+ |++||+++. ..    +..+..|..            .|++++|+|++++|++++. +.|++||++..  
T Consensus       241 ~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~--  316 (447)
T 3dw8_B          241 TFVYSSSKGTIRLCDMRAS-ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNME--  316 (447)
T ss_dssp             EEEEEETTSCEEEEETTTC-SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCC--
T ss_pred             EEEEEeCCCeEEEEECcCC-ccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCC--
Confidence            999999999 999999987 43    677777776            8999999999999999999 99999999641  


Q ss_pred             CCCCCCCCccCccccceEEEecCCCC---------------EEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee
Q 008363          312 DVPATGKPFAGTKQQGLHLVNCSSFA---------------IWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE  370 (568)
Q Consensus       312 ~~~~~g~~~~~~~~~~l~~~~~h~~~---------------V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~  370 (568)
                           +++        +..+.+|...               +..++|+|++.+|++++.||.|++||+.++...
T Consensus       317 -----~~~--------~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          317 -----NRP--------VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             -----SSC--------SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred             -----ccc--------cceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence                 333        3567777532               334899999999999999999999999887653

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.96  E-value=1.2e-28  Score=256.17  Aligned_cols=223  Identities=11%  Similarity=0.151  Sum_probs=183.9

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEecc----------CC---ccCCCCceEEEeecce--
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLS----------SM---KEGTDPRFVKLEPVFR--  169 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~----------~~---~~~~~~~~v~~~~~~~--  169 (568)
                      +++|+|++          .+|++++.||.|++||+.++.....+..+          ..   +.++.++.+++|+...  
T Consensus        61 ~~~~s~~g----------~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  130 (420)
T 3vl1_A           61 GNTFEKVG----------SHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL  130 (420)
T ss_dssp             TCEEEEEE----------TTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCE
T ss_pred             ceeeeecC----------CeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcc
Confidence            78999999          79999999999999999875443322221          11   5667888999999765  


Q ss_pred             ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcE
Q 008363          170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV  249 (568)
Q Consensus       170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~  249 (568)
                      +...+.+|...| ++++|+  |++.+|++|+.||+|++||+.++      ..+..+.+|...|.+++|+|++      .+
T Consensus       131 ~~~~~~~h~~~v-~~~~~~--~~~~~l~s~s~d~~i~iwd~~~~------~~~~~~~~h~~~v~~~~~~~~~------~~  195 (420)
T 3vl1_A          131 QREIDQAHVSEI-TKLKFF--PSGEALISSSQDMQLKIWSVKDG------SNPRTLIGHRATVTDIAIIDRG------RN  195 (420)
T ss_dssp             EEEETTSSSSCE-EEEEEC--TTSSEEEEEETTSEEEEEETTTC------CCCEEEECCSSCEEEEEEETTT------TE
T ss_pred             eeeecccccCcc-EEEEEC--CCCCEEEEEeCCCeEEEEeCCCC------cCceEEcCCCCcEEEEEEcCCC------CE
Confidence            444557999999 999999  88999999999999999999876      6778889999999999999998      89


Q ss_pred             EEEEcCCC-EEEEECCCCCcceeeeCC---CCCCeEE---------------------EEEcCCCCEEEEEeCCCcEEEE
Q 008363          250 ILTAGHGG-LKFWDIRDPFRPLWDIHP---APKFIYG---------------------LDWLPDPGCVILSFDDGAMRIV  304 (568)
Q Consensus       250 las~s~d~-v~lwD~~~~~~~~~~~~~---h~~~i~~---------------------l~~sp~~~~l~s~~~dg~I~lw  304 (568)
                      |++++.|+ |++||++++ .++..+..   |...|.+                     ++|+|++++|++++.||.|++|
T Consensus       196 l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~  274 (420)
T 3vl1_A          196 VLSASLDGTIRLWECGTG-TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVH  274 (420)
T ss_dssp             EEEEETTSCEEEEETTTT-EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEE
T ss_pred             EEEEcCCCcEEEeECCCC-ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEE
Confidence            99999999 999999987 66666653   3444444                     4557899999999999999999


Q ss_pred             EccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCC-EEEEEeCCCeEEEEEcCCCe
Q 008363          305 SLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG-MVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       305 d~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~-~l~s~s~Dg~v~iwd~~~~~  368 (568)
                      |++.        ++.+       ......|...|++++|+|++. +|++++.||.|++||+.++.
T Consensus       275 d~~~--------~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~  324 (420)
T 3vl1_A          275 NVFS--------KEQT-------IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE  324 (420)
T ss_dssp             ETTT--------CCEE-------EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred             ECCC--------Ccee-------EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence            9954        3222       223456889999999999998 99999999999999998753

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=8.8e-28  Score=245.85  Aligned_cols=198  Identities=15%  Similarity=0.076  Sum_probs=160.2

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEe--CCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcC
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLL--GNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ  179 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s--~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~  179 (568)
                      .++.++|+|+|          ++||+++  .|++|+|||+.+++++..+                           .|..
T Consensus       135 ~~~~v~fSpDg----------~~la~as~~~d~~i~iwd~~~~~~~~~~---------------------------~~~~  177 (365)
T 4h5i_A          135 YTKLVYISREG----------TVAAIASSKVPAIMRIIDPSDLTEKFEI---------------------------ETRG  177 (365)
T ss_dssp             CEEEEEECTTS----------SCEEEEESCSSCEEEEEETTTTEEEEEE---------------------------ECSS
T ss_pred             CEEEEEEcCCC----------CEEEEEECCCCCEEEEeECCCCcEEEEe---------------------------CCCC
Confidence            46689999999          6776544  6899999999998877664                           3566


Q ss_pred             ccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC--
Q 008363          180 SIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG--  257 (568)
Q Consensus       180 ~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~--  257 (568)
                      .| ++|+|+  |+|.+|++++.| .+.+|+..++.    .........|...|.+++|+|++      .++++++.++  
T Consensus       178 ~V-~~v~fs--pdg~~l~s~s~~-~~~~~~~~~~~----~~~~~~~~~~~~~v~~v~fspdg------~~l~~~s~d~~~  243 (365)
T 4h5i_A          178 EV-KDLHFS--TDGKVVAYITGS-SLEVISTVTGS----CIARKTDFDKNWSLSKINFIADD------TVLIAASLKKGK  243 (365)
T ss_dssp             CC-CEEEEC--TTSSEEEEECSS-CEEEEETTTCC----EEEEECCCCTTEEEEEEEEEETT------EEEEEEEESSSC
T ss_pred             ce-EEEEEc--cCCceEEeccce-eEEEEEeccCc----ceeeeecCCCCCCEEEEEEcCCC------CEEEEEecCCcc
Confidence            78 999999  899999999855 56666666551    12223456788999999999999      8898887652  


Q ss_pred             ---EEEEECCCCCc---ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEE-
Q 008363          258 ---LKFWDIRDPFR---PLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL-  330 (568)
Q Consensus       258 ---v~lwD~~~~~~---~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~-  330 (568)
                         +++||+.....   ....+.+|...|++++|+|+|++|++|+.|++|+|||+++        +++        +.. 
T Consensus       244 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~--------~~~--------~~~~  307 (365)
T 4h5i_A          244 GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD--------LSM--------SKIF  307 (365)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT--------TEE--------EEEE
T ss_pred             eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC--------CcE--------EEEe
Confidence               67888876532   2356678999999999999999999999999999999953        433        355 


Q ss_pred             EecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          331 VNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       331 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                      +.+|...|++|+|+|+|++||+||.|++|+||++..
T Consensus       308 ~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          308 KQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             TTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             cCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            478999999999999999999999999999999943

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.96  E-value=4.1e-27  Score=240.08  Aligned_cols=250  Identities=15%  Similarity=0.173  Sum_probs=193.5

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc--eeeEEeccCCccCCCCceEEEeecceeccc
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR--TMKAIYLSSMKEGTDPRFVKLEPVFRCSML  173 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~--~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~  173 (568)
                      ..|.+ .|++++|+|++          .+|++|+.||.|+|||+.+++  .+..+                         
T Consensus         5 ~~~~~-~i~~~~~s~~~----------~~l~~~~~d~~v~i~~~~~~~~~~~~~~-------------------------   48 (372)
T 1k8k_C            5 SFLVE-PISCHAWNKDR----------TQIAICPNNHEVHIYEKSGNKWVQVHEL-------------------------   48 (372)
T ss_dssp             ESCSS-CCCEEEECTTS----------SEEEEECSSSEEEEEEEETTEEEEEEEE-------------------------
T ss_pred             cccCC-CeEEEEECCCC----------CEEEEEeCCCEEEEEeCCCCcEEeeeee-------------------------
Confidence            34777 55599999999          899999999999999999876  55554                         


Q ss_pred             ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363          174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA  253 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~  253 (568)
                       .+|...| .+++|+  |++.+|++|+.||.|++||+.+..    ......+..|...|.+++|+|++      .+|+++
T Consensus        49 -~~h~~~v-~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~  114 (372)
T 1k8k_C           49 -KEHNGQV-TGVDWA--PDSNRIVTCGTDRNAYVWTLKGRT----WKPTLVILRINRAARCVRWAPNE------KKFAVG  114 (372)
T ss_dssp             -ECCSSCE-EEEEEE--TTTTEEEEEETTSCEEEEEEETTE----EEEEEECCCCSSCEEEEEECTTS------SEEEEE
T ss_pred             -cCCCCcc-cEEEEe--CCCCEEEEEcCCCeEEEEECCCCe----eeeeEEeecCCCceeEEEECCCC------CEEEEE
Confidence             6788899 999999  789999999999999999998661    12334457899999999999998      899999


Q ss_pred             cCCC-EEEEECCCCCc---ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCcc--Cccccc
Q 008363          254 GHGG-LKFWDIRDPFR---PLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFA--GTKQQG  327 (568)
Q Consensus       254 s~d~-v~lwD~~~~~~---~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~--~~~~~~  327 (568)
                      +.|+ |++||++....   ......+|...|++++|+|++.+|++++.||.|++||++....+.........  ......
T Consensus       115 ~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  194 (372)
T 1k8k_C          115 SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL  194 (372)
T ss_dssp             ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE
T ss_pred             eCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhh
Confidence            9998 99999997742   22334678999999999999999999999999999998532211000000000  001144


Q ss_pred             eEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEc
Q 008363          328 LHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVN  396 (568)
Q Consensus       328 l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~  396 (568)
                      +..+.+|...|.+++|+|++.+|++++.||.|++||+.++........+. ..+.+..+++++..++.+
T Consensus       195 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~  262 (372)
T 1k8k_C          195 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET-LPLLAVTFITESSLVAAG  262 (372)
T ss_dssp             EEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS-CCEEEEEEEETTEEEEEE
T ss_pred             eEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC-CCeEEEEEecCCCEEEEE
Confidence            56788999999999999999999999999999999998776554433222 234455677777666655

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.96  E-value=6.9e-27  Score=240.24  Aligned_cols=213  Identities=11%  Similarity=0.126  Sum_probs=178.3

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS  171 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~  171 (568)
                      .....+|.+ .|++++|+|+++         .+|++|+.||.|+|||+.+++....+.                      
T Consensus        66 ~~~~~~h~~-~v~~~~~~~~~~---------~~l~s~~~dg~i~iwd~~~~~~~~~~~----------------------  113 (383)
T 3ei3_B           66 HRTASPFDR-RVTSLEWHPTHP---------TTVAVGSKGGDIILWDYDVQNKTSFIQ----------------------  113 (383)
T ss_dssp             EEEECCCSS-CEEEEEECSSCT---------TEEEEEEBTSCEEEEETTSTTCEEEEC----------------------
T ss_pred             EEeccCCCC-CEEEEEECCCCC---------CEEEEEcCCCeEEEEeCCCcccceeee----------------------
Confidence            445568888 555999999985         699999999999999999877665441                      


Q ss_pred             ccccCCcCccceEEEEccCC-CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee---CCCCCeeEEEEccCCCCCCCC
Q 008363          172 MLKCGGTQSIPLTMEWSTSP-PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS---ADTLPIRAVSWAPAESDSDSA  247 (568)
Q Consensus       172 ~~~~~h~~~V~~~v~~s~~~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~---~h~~~V~~v~~~p~~~~~~~~  247 (568)
                        ..+|...| .+++|+  | ++.+|++|+.||+|++||+...       .+..+.   .|...|.+++|+|++      
T Consensus       114 --~~~h~~~v-~~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~------  175 (383)
T 3ei3_B          114 --GMGPGDAI-TGMKFN--QFNTNQLFVSSIRGATTLRDFSGS-------VIQVFAKTDSWDYWYCCVDVSVSR------  175 (383)
T ss_dssp             --CCSTTCBE-EEEEEE--TTEEEEEEEEETTTEEEEEETTSC-------EEEEEECCCCSSCCEEEEEEETTT------
T ss_pred             --cCCcCCce-eEEEeC--CCCCCEEEEEeCCCEEEEEECCCC-------ceEEEeccCCCCCCeEEEEECCCC------
Confidence              14789999 999999  6 6789999999999999999843       344443   345889999999999      


Q ss_pred             cEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEccccccCCCCCCCCccCccc
Q 008363          248 NVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPG-CVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQ  325 (568)
Q Consensus       248 ~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~-~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~  325 (568)
                      .+|++++.|+ |++||++ . .++..+.+|...|.+++|+|+++ +|++++.|+.|++||++....    .+        
T Consensus       176 ~~l~~~~~d~~i~i~d~~-~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----~~--------  241 (383)
T 3ei3_B          176 QMLATGDSTGRLLLLGLD-G-HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD----KN--------  241 (383)
T ss_dssp             TEEEEEETTSEEEEEETT-S-CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS----TT--------
T ss_pred             CEEEEECCCCCEEEEECC-C-CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc----cc--------
Confidence            8999999999 9999995 3 67888889999999999999999 899999999999999975320    12        


Q ss_pred             cceEEEecCCCCEEEEEEec-CCCEEEEEeCCCeEEEEEcCCCee
Q 008363          326 QGLHLVNCSSFAIWSVQVSR-LTGMVAYCSADGTVHRFQLTAKAV  369 (568)
Q Consensus       326 ~~l~~~~~h~~~V~~l~~sp-~~~~l~s~s~Dg~v~iwd~~~~~~  369 (568)
                      ..+..+ +|...|++++|+| ++.+|++++.|+.|++||+.++..
T Consensus       242 ~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~  285 (383)
T 3ei3_B          242 SYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK  285 (383)
T ss_dssp             CEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred             ceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence            223444 6999999999999 999999999999999999987654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.96  E-value=1.7e-26  Score=243.54  Aligned_cols=265  Identities=14%  Similarity=0.207  Sum_probs=212.3

Q ss_pred             ceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-------------ccC
Q 008363           90 PRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-------------KEG  156 (568)
Q Consensus        90 p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-------------~~~  156 (568)
                      +....+.+|.+.++.++.|  ++          ++|++|+.||+|++||+.+++.+..+.+|..             +.+
T Consensus       112 ~~~~~l~~h~~~v~~~~~~--~~----------~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~  179 (464)
T 3v7d_B          112 PQRTTLRGHMTSVITCLQF--ED----------NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSG  179 (464)
T ss_dssp             CEEEEEECCSSSCEEEEEE--ET----------TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEE
T ss_pred             cceEEEcCCCCCcEEEEEE--CC----------CEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEE
Confidence            4455678999977766666  45          6999999999999999999999988887765             567


Q ss_pred             CCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCC----------------
Q 008363          157 TDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSID----------------  218 (568)
Q Consensus       157 ~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~----------------  218 (568)
                      +.++.+++|+..+  +...+.+|...| .+++|++.+++.+|++|+.||+|++||+........                
T Consensus       180 s~dg~i~vwd~~~~~~~~~~~~h~~~v-~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  258 (464)
T 3v7d_B          180 STDRTVRVWDIKKGCCTHVFEGHNSTV-RCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE  258 (464)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCE-EEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGG
T ss_pred             eCCCCEEEEECCCCcEEEEECCCCCcc-EEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCC
Confidence            8899999999865  566677899999 999999877889999999999999999986632110                


Q ss_pred             -CceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe
Q 008363          219 -SRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF  296 (568)
Q Consensus       219 -~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~  296 (568)
                       ...+..+.+|...|.++  ++++      .+|++++.|+ |++||+++. .++..+.+|...|++++|+|++.+|++++
T Consensus       259 ~~~~~~~~~~~~~~v~~~--~~~~------~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~sg~  329 (464)
T 3v7d_B          259 NPYFVGVLRGHMASVRTV--SGHG------NIVVSGSYDNTLIVWDVAQM-KCLYILSGHTDRIYSTIYDHERKRCISAS  329 (464)
T ss_dssp             CTTEEEEECCCSSCEEEE--EEET------TEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred             CeEEEEEccCccceEEEE--cCCC------CEEEEEeCCCeEEEEECCCC-cEEEEecCCCCCEEEEEEcCCCCEEEEEe
Confidence             01356788999999888  5566      7999999999 999999987 88888999999999999999999999999


Q ss_pred             CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCC
Q 008363          297 DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRN  376 (568)
Q Consensus       297 ~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~  376 (568)
                      .||.|++||+++        |        +++..+.+|...|.+++|+  +.+|++++.||.|++||+.+..........
T Consensus       330 ~dg~i~vwd~~~--------~--------~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~  391 (464)
T 3v7d_B          330 MDTTIRIWDLEN--------G--------ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT  391 (464)
T ss_dssp             TTSCEEEEETTT--------T--------EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECT
T ss_pred             CCCcEEEEECCC--------C--------cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCC
Confidence            999999999953        4        3457889999999999997  589999999999999999876543321111


Q ss_pred             CcceeeeecccCCCCceEEc
Q 008363          377 RPMHFLCGSVTEDESAITVN  396 (568)
Q Consensus       377 ~~~~~~~~s~~~~~~~i~~~  396 (568)
                      .  ...+..+++++..++.+
T Consensus       392 ~--~~~~~~~~~~~~~l~~~  409 (464)
T 3v7d_B          392 N--LSAITTFYVSDNILVSG  409 (464)
T ss_dssp             T--CCCEEEEEECSSEEEEE
T ss_pred             C--CccEEEEEeCCCEEEEe
Confidence            1  12222455555555544

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.3e-26  Score=230.26  Aligned_cols=233  Identities=17%  Similarity=0.209  Sum_probs=189.8

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-----------------
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-----------------  153 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-----------------  153 (568)
                      .+..+.+|.+ .|.+++| |++          .+|++|+.||.|+|||+.++.....+..+..                 
T Consensus        10 ~~~~l~~h~~-~v~~~~~-~~~----------~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   77 (313)
T 3odt_A           10 LSATLKGHDQ-DVRDVVA-VDD----------SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFG   77 (313)
T ss_dssp             EEEEECCCSS-CEEEEEE-EET----------TEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEE
T ss_pred             HHHHhhCCCC-CcEEEEe-cCC----------CEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEe
Confidence            4455678988 5559999 888          7999999999999999988777666655433                 


Q ss_pred             ----------------------------------------ccCCCCceEEEeecceecccccCCcCccceEEEEccCCCC
Q 008363          154 ----------------------------------------KEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPH  193 (568)
Q Consensus       154 ----------------------------------------~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g  193 (568)
                                                              +.++.++.+.+|+..........|...+ .++.|.+. ++
T Consensus        78 ~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v-~~~~~~~~-~~  155 (313)
T 3odt_A           78 GKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASV-WDAKVVSF-SE  155 (313)
T ss_dssp             ETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECCSSCE-EEEEEEET-TT
T ss_pred             cCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccCCCce-eEEEEccC-CC
Confidence                                                    2233445555565444444556788888 89998832 67


Q ss_pred             CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC-CCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCccee
Q 008363          194 DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA-DTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLW  271 (568)
Q Consensus       194 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~  271 (568)
                      .+|++++.||.|++||..        .....+.. |...|.+++|+|++      . |++++.|+ |++||+++. .++.
T Consensus       156 ~~l~~~~~d~~i~i~d~~--------~~~~~~~~~~~~~i~~~~~~~~~------~-~~~~~~dg~i~i~d~~~~-~~~~  219 (313)
T 3odt_A          156 NKFLTASADKTIKLWQND--------KVIKTFSGIHNDVVRHLAVVDDG------H-FISCSNDGLIKLVDMHTG-DVLR  219 (313)
T ss_dssp             TEEEEEETTSCEEEEETT--------EEEEEECSSCSSCEEEEEEEETT------E-EEEEETTSEEEEEETTTC-CEEE
T ss_pred             CEEEEEECCCCEEEEecC--------ceEEEEeccCcccEEEEEEcCCC------e-EEEccCCCeEEEEECCch-hhhh
Confidence            899999999999999944        66777777 99999999999998      5 88999998 999999987 7888


Q ss_pred             eeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEE
Q 008363          272 DIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVA  351 (568)
Q Consensus       272 ~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~  351 (568)
                      .+.+|...|++++|+|++ .|++++.||.|++||++.        +++        +..+..|...|++++|+|++. ++
T Consensus       220 ~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~--------~~~--------~~~~~~~~~~i~~~~~~~~~~-~~  281 (313)
T 3odt_A          220 TYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKEN--------GSL--------KQVITLPAISIWSVDCMSNGD-II  281 (313)
T ss_dssp             EEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTT--------CCE--------EEEEECSSSCEEEEEECTTSC-EE
T ss_pred             hhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCC--------Cce--------eEEEeccCceEEEEEEccCCC-EE
Confidence            888999999999999999 599999999999999954        433        468889999999999999998 66


Q ss_pred             EEeCCCeEEEEEcCCCeeec
Q 008363          352 YCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       352 s~s~Dg~v~iwd~~~~~~~~  371 (568)
                      +++.||.|++|++.++....
T Consensus       282 ~~~~dg~i~iw~~~~~~~~~  301 (313)
T 3odt_A          282 VGSSDNLVRIFSQEKSRWAS  301 (313)
T ss_dssp             EEETTSCEEEEESCGGGCCC
T ss_pred             EEeCCCcEEEEeCCCCceee
Confidence            79999999999998765543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.6e-26  Score=239.64  Aligned_cols=274  Identities=15%  Similarity=0.187  Sum_probs=211.4

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCccc-EEEEEeCCCcEEEEEC----CCCc------eeeEEec---------
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLG-YLAVLLGNGSLEVWEV----PLLR------TMKAIYL---------  150 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~-~las~s~dg~V~iwd~----~~~~------~~~~l~~---------  150 (568)
                      .......|.+ .|.+++|+|++          . +||+|+.||.|+||++    .+++      ....+..         
T Consensus        37 ~~~~~~~~~~-~v~~~~~s~~~----------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (425)
T 1r5m_A           37 KILKEIVKLD-NIVSSTWNPLD----------ESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSG  105 (425)
T ss_dssp             EECEEEEECS-CCSEEEECSSC----------TTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC----
T ss_pred             hheeeeeccC-ceEEEEECCCC----------CcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccccc
Confidence            3444566777 45599999999          6 9999999999999999    7776      3333332         


Q ss_pred             -cCC--------------ccCCCCceEEEeecce-ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCC
Q 008363          151 -SSM--------------KEGTDPRFVKLEPVFR-CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASD  214 (568)
Q Consensus       151 -~~~--------------~~~~~~~~v~~~~~~~-~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~  214 (568)
                       +..              +.++.++.+.+|+... ....+.+|...| .+++|+  |++.+|++++.||.|++||+.++.
T Consensus       106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v-~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~  182 (425)
T 1r5m_A          106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPI-VSVKWN--KDGTHIISMDVENVTILWNVISGT  182 (425)
T ss_dssp             --CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCE-EEEEEC--TTSSEEEEEETTCCEEEEETTTTE
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccE-EEEEEC--CCCCEEEEEecCCeEEEEECCCCc
Confidence             221              4566778889998433 455567899999 999999  889999999999999999997542


Q ss_pred             CC--------------------------------------------------CCCceeEEeeCCCCCeeEEEEccCCCCC
Q 008363          215 SS--------------------------------------------------IDSRPLLCFSADTLPIRAVSWAPAESDS  244 (568)
Q Consensus       215 ~~--------------------------------------------------~~~~~~~~~~~h~~~V~~v~~~p~~~~~  244 (568)
                      ..                                                  ....++..+..|...|.+++|+|++   
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~---  259 (425)
T 1r5m_A          183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN---  259 (425)
T ss_dssp             EEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT---
T ss_pred             EEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC---
Confidence            10                                                  0012334566789999999999998   


Q ss_pred             CCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCc
Q 008363          245 DSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGT  323 (568)
Q Consensus       245 ~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~  323 (568)
                         .+|++++.|+ |++||+++. ..+..+..|...|.+++|+|++ +|++++.|+.|++||++.        +      
T Consensus       260 ---~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~--------~------  320 (425)
T 1r5m_A          260 ---KLLLSASDDGTLRIWHGGNG-NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ--------N------  320 (425)
T ss_dssp             ---TEEEEEETTSCEEEECSSSB-SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT--------T------
T ss_pred             ---CEEEEEcCCCEEEEEECCCC-ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC--------C------
Confidence               8999999999 999999987 7778888899999999999999 999999999999999953        4      


Q ss_pred             cccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCe--------------------eeccCCCCCcc-eee
Q 008363          324 KQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA--------------------VEKDHSRNRPM-HFL  382 (568)
Q Consensus       324 ~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~--------------------~~~~~~~~~~~-~~~  382 (568)
                        ..+..+..|...|.+++|+|++.+|++++.||.|++||+.+..                    .......+... ...
T Consensus       321 --~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  398 (425)
T 1r5m_A          321 --TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIF  398 (425)
T ss_dssp             --EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEE
T ss_pred             --cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceE
Confidence              3346788899999999999999999999999999999998766                    33332222222 455


Q ss_pred             eecccCCCCceEEcccCCCC
Q 008363          383 CGSVTEDESAITVNTPLDNT  402 (568)
Q Consensus       383 ~~s~~~~~~~i~~~~~~~~~  402 (568)
                      +..+++++..|++++....+
T Consensus       399 ~~~~s~~~~~l~~~~~dg~i  418 (425)
T 1r5m_A          399 DLSWNCAGNKISVAYSLQEG  418 (425)
T ss_dssp             EEEECTTSSEEEEEESSSCC
T ss_pred             EEEccCCCceEEEEecCceE
Confidence            56777888777776655444

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=9.2e-27  Score=243.69  Aligned_cols=216  Identities=19%  Similarity=0.310  Sum_probs=178.0

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC----------ceeeEEeccCCccCCCCce
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL----------RTMKAIYLSSMKEGTDPRF  161 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~----------~~~~~l~~~~~~~~~~~~~  161 (568)
                      +.....|.+. |++++|+|+++         .+||+++.||.|+||++...          ..+..+             
T Consensus       121 ~~~~~~h~~~-v~~l~~~p~~~---------~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-------------  177 (430)
T 2xyi_A          121 IEIKINHEGE-VNRARYMPQNA---------CVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-------------  177 (430)
T ss_dssp             EEEEEEESSC-CSEEEEETTEE---------EEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-------------
T ss_pred             EEEEEcCCCc-EEEEEECCCCC---------cEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-------------
Confidence            4556889984 55999999843         79999999999999999762          222222             


Q ss_pred             EEEeecceecccccCCcCccceEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCC-CCCceeEEeeCCCCCeeEEEEcc
Q 008363          162 VKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSS-IDSRPLLCFSADTLPIRAVSWAP  239 (568)
Q Consensus       162 v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~-~~~~~~~~~~~h~~~V~~v~~~p  239 (568)
                                   .+|...| ++++|+  |++. +|++|+.||+|++||+...... ....+...+.+|...|.+++|+|
T Consensus       178 -------------~~h~~~v-~~l~~~--~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p  241 (430)
T 2xyi_A          178 -------------RGHQKEG-YGLSWN--PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHL  241 (430)
T ss_dssp             -------------ECCSSCC-CCEEEC--TTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECS
T ss_pred             -------------cCCCCCe-EEEEeC--CCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeC
Confidence                         6888998 999999  6666 9999999999999999864210 01123567789999999999999


Q ss_pred             CCCCCCCCcEEEEEcCCC-EEEEECCCCC--cceeeeCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEccccccCCCC
Q 008363          240 AESDSDSANVILTAGHGG-LKFWDIRDPF--RPLWDIHPAPKFIYGLDWLPDPG-CVILSFDDGAMRIVSLLKAAYDVPA  315 (568)
Q Consensus       240 ~~~~~~~~~~las~s~d~-v~lwD~~~~~--~~~~~~~~h~~~i~~l~~sp~~~-~l~s~~~dg~I~lwd~~~~~~~~~~  315 (568)
                      .+     ..+|++++.|+ |++||+++..  .++..+..|...|++++|+|++. +|++|+.||.|++||++...     
T Consensus       242 ~~-----~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-----  311 (430)
T 2xyi_A          242 LH-----ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-----  311 (430)
T ss_dssp             SC-----TTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-----
T ss_pred             CC-----CCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-----
Confidence            54     28999999999 9999999763  56677779999999999999987 58899999999999997532     


Q ss_pred             CCCCccCccccceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCC
Q 008363          316 TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~  366 (568)
                                .++..+.+|...|++++|+|++ .+|++++.||.|+|||+..
T Consensus       312 ----------~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          312 ----------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             ----------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             ----------CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence                      3457888999999999999998 5799999999999999976

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.96  E-value=5.1e-27  Score=243.96  Aligned_cols=204  Identities=11%  Similarity=0.120  Sum_probs=169.9

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC  175 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~  175 (568)
                      .+|.+ .|.+++|+|++          .+|++|+.||.|+|||+.+++.+..+                          .
T Consensus       136 ~~h~~-~v~~~~~~~~~----------~~l~s~s~d~~i~iwd~~~~~~~~~~--------------------------~  178 (420)
T 3vl1_A          136 QAHVS-EITKLKFFPSG----------EALISSSQDMQLKIWSVKDGSNPRTL--------------------------I  178 (420)
T ss_dssp             TSSSS-CEEEEEECTTS----------SEEEEEETTSEEEEEETTTCCCCEEE--------------------------E
T ss_pred             ccccC-ccEEEEECCCC----------CEEEEEeCCCeEEEEeCCCCcCceEE--------------------------c
Confidence            47888 55599999999          79999999999999999998877766                          7


Q ss_pred             CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC---CCCCeeEEEE---------------
Q 008363          176 GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA---DTLPIRAVSW---------------  237 (568)
Q Consensus       176 ~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~---h~~~V~~v~~---------------  237 (568)
                      +|...| ++++|+  |++.+|++|+.||+|++||+.++      +++..+..   |...|.+++|               
T Consensus       179 ~h~~~v-~~~~~~--~~~~~l~s~~~d~~v~iwd~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  249 (420)
T 3vl1_A          179 GHRATV-TDIAII--DRGRNVLSASLDGTIRLWECGTG------TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK  249 (420)
T ss_dssp             CCSSCE-EEEEEE--TTTTEEEEEETTSCEEEEETTTT------EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred             CCCCcE-EEEEEc--CCCCEEEEEcCCCcEEEeECCCC------ceeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence            788999 999999  88999999999999999999876      67777764   4444555554               


Q ss_pred             ------ccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcccc
Q 008363          238 ------APAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPG-CVILSFDDGAMRIVSLLKA  309 (568)
Q Consensus       238 ------~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~-~l~s~~~dg~I~lwd~~~~  309 (568)
                            +|++      .+|++++.|+ |++||+++..........|...|++++|+|++. +|++++.||.|++||++. 
T Consensus       250 v~~~~~s~~~------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~-  322 (420)
T 3vl1_A          250 KNNLEFGTYG------KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS-  322 (420)
T ss_dssp             CCTTCSSCTT------EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC-
T ss_pred             ccceEEcCCC------CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCC-
Confidence                  6666      8999999999 999999988444444556889999999999999 999999999999999965 


Q ss_pred             ccCCCCCCCCccCccccceEEEec-CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363          310 AYDVPATGKPFAGTKQQGLHLVNC-SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       310 ~~~~~~~g~~~~~~~~~~l~~~~~-h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~  367 (568)
                             ++       .++..+.+ |...|+++.| +++.+|++++.||.|++|++...
T Consensus       323 -------~~-------~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          323 -------PE-------CPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             -------TT-------SCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred             -------Cc-------CchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence                   22       22356666 6678888855 57889999999999999999763

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.96  E-value=2.7e-26  Score=236.72  Aligned_cols=255  Identities=14%  Similarity=0.114  Sum_probs=194.9

Q ss_pred             EEeeccCCceeeEEEEcc-CCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEe-------------ccCC-----
Q 008363           93 VLCLAHNGKVAWDVKWKP-YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIY-------------LSSM-----  153 (568)
Q Consensus        93 ~~~~~h~~~~v~~v~~sp-~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~-------------~~~~-----  153 (568)
                      ....+|.+ .|.+++|+| ++          .+||+|+.||.|+|||+.++.....+.             +|..     
T Consensus        37 ~~~~~h~~-~v~~~~~s~~~~----------~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  105 (408)
T 4a11_B           37 DVERIHGG-GINTLDIEPVEG----------RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETV  105 (408)
T ss_dssp             EECCCCSS-CEEEEEECTTTC----------CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEE
T ss_pred             eeeeccCC-cEEEEEEecCCC----------CEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEE
Confidence            34467888 455999999 88          899999999999999999865544432             1221     


Q ss_pred             ----------ccCCCCceEEEeecceec-ccccCCcCccceEEEEccCC-CCCEEEEEeCCCeEEEEEccCCCCCCCCce
Q 008363          154 ----------KEGTDPRFVKLEPVFRCS-MLKCGGTQSIPLTMEWSTSP-PHDYLLAGCHDGTVALWKFVASDSSIDSRP  221 (568)
Q Consensus       154 ----------~~~~~~~~v~~~~~~~~~-~~~~~h~~~V~~~v~~s~~~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~  221 (568)
                                +.++.++.+++|+..... .....+...+ .++.|++.. ++.+|++|+.||.|++||+.++      .+
T Consensus       106 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~------~~  178 (408)
T 4a11_B          106 QWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETV-YSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG------SC  178 (408)
T ss_dssp             EECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCE-EEEEECSSCSSCCEEEEEESSSSEEEEESSSS------CC
T ss_pred             EEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCce-eeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc------ce
Confidence                      456678899999886521 1122366677 899998432 4559999999999999999876      77


Q ss_pred             eEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeee---------------CCCCCCeEEEEE
Q 008363          222 LLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDI---------------HPAPKFIYGLDW  285 (568)
Q Consensus       222 ~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~---------------~~h~~~i~~l~~  285 (568)
                      +..+.+|...|.+++|+|++.     .+|++++.|+ |++||++....++..+               ..|...|++++|
T Consensus       179 ~~~~~~~~~~v~~~~~~~~~~-----~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  253 (408)
T 4a11_B          179 SHILQGHRQEILAVSWSPRYD-----YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF  253 (408)
T ss_dssp             CEEECCCCSCEEEEEECSSCT-----TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred             eeeecCCCCcEEEEEECCCCC-----cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence            788999999999999999982     4799999999 9999999875455444               578899999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEccccccCCCCCCCC---------c----------------------cCccccceEEEecC
Q 008363          286 LPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKP---------F----------------------AGTKQQGLHLVNCS  334 (568)
Q Consensus       286 sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~---------~----------------------~~~~~~~l~~~~~h  334 (568)
                      +|++++|++++.||.|++||++.........+..         +                      .......+..+.+|
T Consensus       254 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~  333 (408)
T 4a11_B          254 TSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH  333 (408)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC
T ss_pred             cCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC
Confidence            9999999999999999999997643211000000         0                      00112446678899


Q ss_pred             CCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee
Q 008363          335 SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE  370 (568)
Q Consensus       335 ~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~  370 (568)
                      ...|++++|+|++.+|++++.||.|++|++.+.+..
T Consensus       334 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~  369 (408)
T 4a11_B          334 YKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPV  369 (408)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEEEECC----
T ss_pred             CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCcc
Confidence            999999999999999999999999999999876543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=1e-26  Score=237.99  Aligned_cols=265  Identities=9%  Similarity=0.024  Sum_probs=197.2

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCC-------cEEEEECCCCcee--------e--EEeccCC-----------
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNG-------SLEVWEVPLLRTM--------K--AIYLSSM-----------  153 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg-------~V~iwd~~~~~~~--------~--~l~~~~~-----------  153 (568)
                      +|++++|+|++          .+|++|+.+.       .|+||++......        .  .+..+..           
T Consensus        16 PV~sv~fs~dg----------~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~   85 (365)
T 4h5i_A           16 PAYGAKFLNND----------TLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGI   85 (365)
T ss_dssp             CEEEEEEEETT----------EEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTE
T ss_pred             CEEEEEEeCCC----------cEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCE
Confidence            68899999999          8999998654       4999998763211        1  1111111           


Q ss_pred             ------------ccCCCCceEEEeecceec---------c--cccCCcCccceEEEEccCCCCCEEEEEe--CCCeEEEE
Q 008363          154 ------------KEGTDPRFVKLEPVFRCS---------M--LKCGGTQSIPLTMEWSTSPPHDYLLAGC--HDGTVALW  208 (568)
Q Consensus       154 ------------~~~~~~~~v~~~~~~~~~---------~--~~~~h~~~V~~~v~~s~~~~g~~l~sgs--~Dg~I~iw  208 (568)
                                  ..++.+..+++|......         .  ....+...+ .+++|+  |||++|++|+  .|++|+||
T Consensus        86 ~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~fS--pDg~~la~as~~~d~~i~iw  162 (365)
T 4h5i_A           86 ILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYT-KLVYIS--REGTVAAIASSKVPAIMRII  162 (365)
T ss_dssp             EEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCE-EEEEEC--TTSSCEEEEESCSSCEEEEE
T ss_pred             EEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCE-EEEEEc--CCCCEEEEEECCCCCEEEEe
Confidence                        235567778887654310         0  112334456 789999  8999876554  78999999


Q ss_pred             EccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcce-eeeCCCCCCeEEEEEcC
Q 008363          209 KFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPL-WDIHPAPKFIYGLDWLP  287 (568)
Q Consensus       209 d~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~-~~~~~h~~~i~~l~~sp  287 (568)
                      |+.+.      .++..+. |...|.+|+|+|++      .+|++++.+++++|+..++.... .....|...|.+++|+|
T Consensus       163 d~~~~------~~~~~~~-~~~~V~~v~fspdg------~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp  229 (365)
T 4h5i_A          163 DPSDL------TEKFEIE-TRGEVKDLHFSTDG------KVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIA  229 (365)
T ss_dssp             ETTTT------EEEEEEE-CSSCCCEEEECTTS------SEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEE
T ss_pred             ECCCC------cEEEEeC-CCCceEEEEEccCC------ceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcC
Confidence            99876      7777774 77889999999999      89999998888888877663332 34557888999999999


Q ss_pred             CCCEEEEEeCCC----cEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363          288 DPGCVILSFDDG----AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQ  363 (568)
Q Consensus       288 ~~~~l~s~~~dg----~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd  363 (568)
                      ++.++++++.|+    .+++|++....        ..    ......+.+|...|++++|+|+|++||+|+.|++|+|||
T Consensus       230 dg~~l~~~s~d~~~~~~i~~~~~~~~~--------~~----~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd  297 (365)
T 4h5i_A          230 DDTVLIAASLKKGKGIVLTKISIKSGN--------TS----VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVK  297 (365)
T ss_dssp             TTEEEEEEEESSSCCEEEEEEEEETTE--------EE----EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CCCEEEEEecCCcceeEEeecccccce--------ec----ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEE
Confidence            999999998877    68888885421        10    022356788999999999999999999999999999999


Q ss_pred             cCCCeeeccCCCCCcceeeeecccCCCCceEEcccCCCCCc
Q 008363          364 LTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPV  404 (568)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~  404 (568)
                      +.+++........-...+.+.++++++..|+.++....+.+
T Consensus       298 ~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrv  338 (365)
T 4h5i_A          298 LKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHI  338 (365)
T ss_dssp             TTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred             CCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence            99988765532222334667789999999999887666643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.95  E-value=2.6e-26  Score=259.32  Aligned_cols=258  Identities=15%  Similarity=0.213  Sum_probs=214.9

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCC
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGT  157 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~  157 (568)
                      ...+.+|.+. |.+++|+|++          .+||+|+.||.|+|||+.++..+..+..|..              +.++
T Consensus         6 ~~~~~~h~~~-v~~i~~sp~~----------~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~   74 (814)
T 3mkq_A            6 KKTFSNRSDR-VKGIDFHPTE----------PWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS   74 (814)
T ss_dssp             EEEEEEECSC-EEEEEECSSS----------SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE
T ss_pred             ceeeecCCCc-eEEEEECCCC----------CEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEe
Confidence            4456789984 5599999999          7999999999999999999998888887665              5567


Q ss_pred             CCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEE
Q 008363          158 DPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAV  235 (568)
Q Consensus       158 ~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v  235 (568)
                      .++.+.+|+..+  ....+.+|...| ++++|+  |++.+|++|+.||+|++||+.++     ......+.+|...|.++
T Consensus        75 ~dg~i~vw~~~~~~~~~~~~~~~~~v-~~~~~s--~~~~~l~~~~~dg~i~vw~~~~~-----~~~~~~~~~~~~~v~~~  146 (814)
T 3mkq_A           75 DDFRIRVFNYNTGEKVVDFEAHPDYI-RSIAVH--PTKPYVLSGSDDLTVKLWNWENN-----WALEQTFEGHEHFVMCV  146 (814)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCE-EEEEEC--SSSSEEEEEETTSEEEEEEGGGT-----SEEEEEEECCSSCEEEE
T ss_pred             CCCeEEEEECCCCcEEEEEecCCCCE-EEEEEe--CCCCEEEEEcCCCEEEEEECCCC-----ceEEEEEcCCCCcEEEE
Confidence            889999999765  445667899999 999999  88999999999999999999864     25677888999999999


Q ss_pred             EEcc-CCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeC-CCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEEccccc
Q 008363          236 SWAP-AESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIH-PAPKFIYGLDWLP--DPGCVILSFDDGAMRIVSLLKAA  310 (568)
Q Consensus       236 ~~~p-~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~-~h~~~i~~l~~sp--~~~~l~s~~~dg~I~lwd~~~~~  310 (568)
                      +|+| ++      .+|++++.|+ |++||+.+. .+...+. .+...+.+++|+|  ++.+|++++.||.|++||++.  
T Consensus       147 ~~~p~~~------~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~--  217 (814)
T 3mkq_A          147 AFNPKDP------STFASGCLDRTVKVWSLGQS-TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT--  217 (814)
T ss_dssp             EEETTEE------EEEEEEETTSEEEEEETTCS-SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT--
T ss_pred             EEEcCCC------CEEEEEeCCCeEEEEECCCC-cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC--
Confidence            9999 66      8999999999 999999877 4444444 4458899999999  999999999999999999943  


Q ss_pred             cCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCC
Q 008363          311 YDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDE  390 (568)
Q Consensus       311 ~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~  390 (568)
                            +        ..+..+.+|...|.+++|+|++.+|++++.||.|++||+.++......... .....+.++++++
T Consensus       218 ------~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~  282 (814)
T 3mkq_A          218 ------K--------SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-LERSWCIATHPTG  282 (814)
T ss_dssp             ------T--------EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS-SSSEEEEEECTTC
T ss_pred             ------C--------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC-CCcEEEEEEccCC
Confidence                  4        334688899999999999999999999999999999999987665543322 2234455666766


Q ss_pred             Cc
Q 008363          391 SA  392 (568)
Q Consensus       391 ~~  392 (568)
                      ..
T Consensus       283 ~~  284 (814)
T 3mkq_A          283 RK  284 (814)
T ss_dssp             GG
T ss_pred             Cc
Confidence            53

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.95  E-value=1.4e-26  Score=257.29  Aligned_cols=241  Identities=15%  Similarity=0.198  Sum_probs=193.7

Q ss_pred             EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecc
Q 008363           93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSM  172 (568)
Q Consensus        93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~  172 (568)
                      ..+.+|.+ .|.+++|+|++          .+|++|+.||+|+|||+.++.++..+                        
T Consensus       424 ~~~~~h~~-~v~~v~~s~~g----------~~l~sgs~Dg~v~vwd~~~~~~~~~~------------------------  468 (694)
T 3dm0_A          424 RRLTGHSH-FVEDVVLSSDG----------QFALSGSWDGELRLWDLAAGVSTRRF------------------------  468 (694)
T ss_dssp             EEEECCSS-CEEEEEECTTS----------SEEEEEETTSEEEEEETTTTEEEEEE------------------------
T ss_pred             ceecCCCC-cEEEEEECCCC----------CEEEEEeCCCcEEEEECCCCcceeEE------------------------
Confidence            44678998 55599999999          89999999999999999998887776                        


Q ss_pred             cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEE---eeCCCCCeeEEEEccCCCCCCCCcE
Q 008363          173 LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLC---FSADTLPIRAVSWAPAESDSDSANV  249 (568)
Q Consensus       173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~---~~~h~~~V~~v~~~p~~~~~~~~~~  249 (568)
                        .+|...| ++++|+  |++.+|++|+.||+|+|||+...      .....   ..+|...|.+++|+|++    ...+
T Consensus       469 --~~h~~~v-~~~~~s--~~~~~l~s~s~D~~i~iwd~~~~------~~~~~~~~~~~h~~~v~~~~~~~~~----~~~~  533 (694)
T 3dm0_A          469 --VGHTKDV-LSVAFS--LDNRQIVSASRDRTIKLWNTLGE------CKYTISEGGEGHRDWVSCVRFSPNT----LQPT  533 (694)
T ss_dssp             --ECCSSCE-EEEEEC--TTSSCEEEEETTSCEEEECTTSC------EEEEECSSTTSCSSCEEEEEECSCS----SSCE
T ss_pred             --eCCCCCE-EEEEEe--CCCCEEEEEeCCCEEEEEECCCC------cceeeccCCCCCCCcEEEEEEeCCC----Ccce
Confidence              7899999 999999  88999999999999999998643      22222   24689999999999986    2358


Q ss_pred             EEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363          250 ILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       250 las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                      |++++.|+ |++||+++. .....+.+|.+.|++++|+|++++|++++.||+|++||++.        ++.        +
T Consensus       534 l~s~s~d~~v~vwd~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~--------~~~--------~  596 (694)
T 3dm0_A          534 IVSASWDKTVKVWNLSNC-KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE--------GKK--------L  596 (694)
T ss_dssp             EEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT--------TEE--------E
T ss_pred             EEEEeCCCeEEEEECCCC-cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC--------Cce--------E
Confidence            99999999 999999977 77788999999999999999999999999999999999954        433        2


Q ss_pred             EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCC------------------CcceeeeecccCCC
Q 008363          329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRN------------------RPMHFLCGSVTEDE  390 (568)
Q Consensus       329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~------------------~~~~~~~~s~~~~~  390 (568)
                      ..+. +...|.+++|+|++.+|++++ |+.|+|||+.++.........                  ......+..+++++
T Consensus       597 ~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg  674 (694)
T 3dm0_A          597 YSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG  674 (694)
T ss_dssp             ECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTS
T ss_pred             EEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCC
Confidence            3443 456899999999988887766 667999999987654432110                  01123445678888


Q ss_pred             CceEEcccCCCC
Q 008363          391 SAITVNTPLDNT  402 (568)
Q Consensus       391 ~~i~~~~~~~~~  402 (568)
                      ..|++++....+
T Consensus       675 ~~l~sgs~Dg~i  686 (694)
T 3dm0_A          675 STLFSGYTDGVI  686 (694)
T ss_dssp             SEEEEEETTSEE
T ss_pred             CEEEEEcCCCeE
Confidence            888887665544

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.95  E-value=8.6e-27  Score=241.42  Aligned_cols=213  Identities=16%  Similarity=0.248  Sum_probs=174.5

Q ss_pred             eeccCCceeeEEEEcc-CCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363           95 CLAHNGKVAWDVKWKP-YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML  173 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp-~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~  173 (568)
                      +.+|.+ .|.+++|+| ++          .+|++|+.||.|+|||+.++.....+                   ......
T Consensus        77 ~~~h~~-~V~~~~~~p~~~----------~~l~s~s~dg~v~vw~~~~~~~~~~~-------------------~~~~~~  126 (402)
T 2aq5_A           77 VCGHTA-PVLDIAWCPHND----------NVIASGSEDCTVMVWEIPDGGLVLPL-------------------REPVIT  126 (402)
T ss_dssp             BCCCSS-CEEEEEECTTCT----------TEEEEEETTSEEEEEECCTTCCSSCB-------------------CSCSEE
T ss_pred             EecCCC-CEEEEEeCCCCC----------CEEEEEeCCCeEEEEEccCCCCcccc-------------------CCceEE
Confidence            467888 555999999 77          79999999999999999986322110                   001112


Q ss_pred             ccCCcCccceEEEEccCCCC-CEEEEEeCCCeEEEEEccCCCCCCCCceeEEe--eCCCCCeeEEEEccCCCCCCCCcEE
Q 008363          174 KCGGTQSIPLTMEWSTSPPH-DYLLAGCHDGTVALWKFVASDSSIDSRPLLCF--SADTLPIRAVSWAPAESDSDSANVI  250 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~--~~h~~~V~~v~~~p~~~~~~~~~~l  250 (568)
                      +.+|...| .+++|+  |++ .+|++|+.||+|++||+.++      .++..+  .+|...|.+++|+|++      .+|
T Consensus       127 ~~~h~~~v-~~~~~~--p~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~------~~l  191 (402)
T 2aq5_A          127 LEGHTKRV-GIVAWH--PTAQNVLLSAGCDNVILVWDVGTG------AAVLTLGPDVHPDTIYSVDWSRDG------ALI  191 (402)
T ss_dssp             EECCSSCE-EEEEEC--SSBTTEEEEEETTSCEEEEETTTT------EEEEEECTTTCCSCEEEEEECTTS------SCE
T ss_pred             ecCCCCeE-EEEEEC--cCCCCEEEEEcCCCEEEEEECCCC------CccEEEecCCCCCceEEEEECCCC------CEE
Confidence            27899999 999999  776 69999999999999999976      788888  7899999999999998      899


Q ss_pred             EEEcCCC-EEEEECCCCCcceeee-CCCCCC-eEEEEEcCCCCEEEEE---eCCCcEEEEEccccccCCCCCCCCccCcc
Q 008363          251 LTAGHGG-LKFWDIRDPFRPLWDI-HPAPKF-IYGLDWLPDPGCVILS---FDDGAMRIVSLLKAAYDVPATGKPFAGTK  324 (568)
Q Consensus       251 as~s~d~-v~lwD~~~~~~~~~~~-~~h~~~-i~~l~~sp~~~~l~s~---~~dg~I~lwd~~~~~~~~~~~g~~~~~~~  324 (568)
                      ++++.|+ |++||++++ ..+..+ ..|.+. +.++.|+|++.+|++|   +.|+.|++||++...        .     
T Consensus       192 ~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~--------~-----  257 (402)
T 2aq5_A          192 CTSCRDKRVRVIEPRKG-TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE--------E-----  257 (402)
T ss_dssp             EEEETTSEEEEEETTTT-EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS--------S-----
T ss_pred             EEEecCCcEEEEeCCCC-ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc--------C-----
Confidence            9999999 999999987 777777 688776 8999999999999998   689999999996522        1     


Q ss_pred             ccceEEE-ecCCCCEEEEEEecCCCEEEE-EeCCCeEEEEEcCCCe
Q 008363          325 QQGLHLV-NCSSFAIWSVQVSRLTGMVAY-CSADGTVHRFQLTAKA  368 (568)
Q Consensus       325 ~~~l~~~-~~h~~~V~~l~~sp~~~~l~s-~s~Dg~v~iwd~~~~~  368 (568)
                        ++... ..|...|.+++|+|++.+|++ ++.||.|++|++.++.
T Consensus       258 --~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          258 --PLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             --CSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             --CceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence              11222 257788999999999998865 5579999999998765

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=8.1e-27  Score=261.31  Aligned_cols=251  Identities=15%  Similarity=0.184  Sum_probs=198.9

Q ss_pred             EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC--CceeeEEeccCCccCCCCceEEEeecceec
Q 008363           94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL--LRTMKAIYLSSMKEGTDPRFVKLEPVFRCS  171 (568)
Q Consensus        94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~--~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~  171 (568)
                      ...+|.+ .|++++|+|++          .+|++|+.||.|+|||+..  +..+..+                       
T Consensus         4 ~l~gH~~-~V~~l~~s~dg----------~~latg~~dg~I~vwd~~~~~~~~~~~l-----------------------   49 (753)
T 3jro_A            4 IANAHNE-LIHDAVLDYYG----------KRLATCSSDKTIKIFEVEGETHKLIDTL-----------------------   49 (753)
T ss_dssp             ----CCC-CEEEECCCSSS----------CCEEEEETTTEEEEEEEETTEEEEEEEE-----------------------
T ss_pred             ecccCcc-eeEEEEECCCC----------CeEEEEECCCcEEEEecCCCCCccceec-----------------------
Confidence            3568999 55599999999          7999999999999999984  3444443                       


Q ss_pred             ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC--CCCCCCCcE
Q 008363          172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA--ESDSDSANV  249 (568)
Q Consensus       172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~--~~~~~~~~~  249 (568)
                         .+|...| ++++|++..++.+|++|+.||+|++||+.++.    ...+..+.+|...|.+++|+|+  +      .+
T Consensus        50 ---~~h~~~V-~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~----~~~~~~~~~h~~~V~~v~~sp~~~~------~~  115 (753)
T 3jro_A           50 ---TGHEGPV-WRVDWAHPKFGTILASCSYDGKVLIWKEENGR----WSQIAVHAVHSASVNSVQWAPHEYG------PL  115 (753)
T ss_dssp             ---CCCSSCE-EEEEECCTTSCSEEEEEETTSCEEEEEEETTE----EEEEEEECCCSSCEEEEEECCGGGC------SE
T ss_pred             ---cCCcCce-EEEEecCCCCCCEEEEEeCCCeEEEEECCCCc----ccccccccCCCCCeEEEEECCCCCC------CE
Confidence               7899999 99999944338999999999999999998761    1377788899999999999999  7      89


Q ss_pred             EEEEcCCC-EEEEECCCCC-cceeeeCCCCCCeEEEEEcC-------------CCCEEEEEeCCCcEEEEEccccccCCC
Q 008363          250 ILTAGHGG-LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLP-------------DPGCVILSFDDGAMRIVSLLKAAYDVP  314 (568)
Q Consensus       250 las~s~d~-v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp-------------~~~~l~s~~~dg~I~lwd~~~~~~~~~  314 (568)
                      |++|+.|+ |++||+++.. .....+.+|...|++++|+|             ++.+|++|+.||.|++||++.      
T Consensus       116 l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~------  189 (753)
T 3jro_A          116 LLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS------  189 (753)
T ss_dssp             EEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEET------
T ss_pred             EEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccC------
Confidence            99999999 9999998763 33456678999999999999             589999999999999999965      


Q ss_pred             CCCCCccCccccceEEEecCCCCEEEEEEecC---CCEEEEEeCCCeEEEEEcCCCeeec----cCCCCCcceeeeeccc
Q 008363          315 ATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL---TGMVAYCSADGTVHRFQLTAKAVEK----DHSRNRPMHFLCGSVT  387 (568)
Q Consensus       315 ~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~---~~~l~s~s~Dg~v~iwd~~~~~~~~----~~~~~~~~~~~~~s~~  387 (568)
                        +...    ...+..+.+|...|++++|+|+   +.+|++++.||.|++||+.++....    ...........+.+++
T Consensus       190 --~~~~----~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s  263 (753)
T 3jro_A          190 --DAQT----YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS  263 (753)
T ss_dssp             --TTTE----EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEEC
T ss_pred             --Cccc----ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEc
Confidence              2111    1345678899999999999999   8999999999999999998753111    0011122234456788


Q ss_pred             CCCCceEEcccCCCCCc
Q 008363          388 EDESAITVNTPLDNTPV  404 (568)
Q Consensus       388 ~~~~~i~~~~~~~~~~~  404 (568)
                      +++..+++++..+.+.+
T Consensus       264 pdg~~l~s~s~Dg~I~v  280 (753)
T 3jro_A          264 LSGNVLALSGGDNKVTL  280 (753)
T ss_dssp             TTTCCEEEECSSSCEEC
T ss_pred             CCCCEEEEEcCCCEEEE
Confidence            89988888776655543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.95  E-value=3.3e-27  Score=239.84  Aligned_cols=252  Identities=16%  Similarity=0.218  Sum_probs=195.5

Q ss_pred             cCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCC
Q 008363           98 HNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGG  177 (568)
Q Consensus        98 h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h  177 (568)
                      |.+ .+.+++|+|++.      ..-.+|++|+.||.|+|||+.+++.+..+                          .+|
T Consensus        68 ~~~-~v~~~~~~~~~~------~~~~~l~~~~~dg~i~v~d~~~~~~~~~~--------------------------~~~  114 (366)
T 3k26_A           68 ADE-NFYTCAWTYDSN------TSHPLLAVAGSRGIIRIINPITMQCIKHY--------------------------VGH  114 (366)
T ss_dssp             TTC-CEEEEEEEECTT------TCCEEEEEEETTCEEEEECTTTCCEEEEE--------------------------ESC
T ss_pred             CCC-cEEEEEeccCCC------CCCCEEEEecCCCEEEEEEchhceEeeee--------------------------cCC
Confidence            555 566999999931      00069999999999999999998887776                          678


Q ss_pred             cCccceEEEEccCC-CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe---eCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363          178 TQSIPLTMEWSTSP-PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF---SADTLPIRAVSWAPAESDSDSANVILTA  253 (568)
Q Consensus       178 ~~~V~~~v~~s~~~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~---~~h~~~V~~v~~~p~~~~~~~~~~las~  253 (568)
                      ...| .+++|+  | ++.+|++|+.||+|++||+.++      ..+..+   .+|...|.+++|+|++      .+|+++
T Consensus       115 ~~~i-~~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~  179 (366)
T 3k26_A          115 GNAI-NELKFH--PRDPNLLLSVSKDHALRLWNIQTD------TLVAIFGGVEGHRDEVLSADYDLLG------EKIMSC  179 (366)
T ss_dssp             CSCE-EEEEEC--SSCTTEEEEEETTSCEEEEETTTT------EEEEEECSTTSCSSCEEEEEECTTS------SEEEEE
T ss_pred             CCcE-EEEEEC--CCCCCEEEEEeCCCeEEEEEeecC------eEEEEecccccccCceeEEEECCCC------CEEEEe
Confidence            8999 999999  6 7889999999999999999876      777777   6899999999999998      899999


Q ss_pred             cCCC-EEEEECCCCCccee----------------------------eeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 008363          254 GHGG-LKFWDIRDPFRPLW----------------------------DIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIV  304 (568)
Q Consensus       254 s~d~-v~lwD~~~~~~~~~----------------------------~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lw  304 (568)
                      +.|+ |++||+++. ..+.                            ....|...|.+++|+  +.+|++++.|+.|++|
T Consensus       180 ~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~w  256 (366)
T 3k26_A          180 GMDHSLKLWRINSK-RMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCW  256 (366)
T ss_dssp             ETTSCEEEEESCSH-HHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEE
T ss_pred             cCCCCEEEEECCCC-ccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEE
Confidence            9998 999999875 3322                            223489999999999  7799999999999999


Q ss_pred             EccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecC--CCEEEEEeCCCeEEEEEcCCCeeec----cCCCCC-
Q 008363          305 SLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL--TGMVAYCSADGTVHRFQLTAKAVEK----DHSRNR-  377 (568)
Q Consensus       305 d~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~--~~~l~s~s~Dg~v~iwd~~~~~~~~----~~~~~~-  377 (568)
                      |++........  ..........+..+.+|...|++++|+|+  +.+|++++.||.|++||+.++....    ....+. 
T Consensus       257 d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  334 (366)
T 3k26_A          257 KPGKMEDDIDK--IKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKC  334 (366)
T ss_dssp             EESSTTCCGGG--CCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTC
T ss_pred             eCCCccccccc--cccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEccccc
Confidence            99654311000  00000111346788899999999999999  9999999999999999998764322    112221 


Q ss_pred             cceeeeecccCCCCceEEcccCCCC
Q 008363          378 PMHFLCGSVTEDESAITVNTPLDNT  402 (568)
Q Consensus       378 ~~~~~~~s~~~~~~~i~~~~~~~~~  402 (568)
                      ...+.+.++++++..|+.++....+
T Consensus       335 ~~~v~~~~~s~~~~~l~s~~~dg~i  359 (366)
T 3k26_A          335 GAAIRQTSFSRDSSILIAVCDDASI  359 (366)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             CCceEEEEeCCCCCeEEEEeCCCEE
Confidence            3445666788888888776654433

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=5.9e-26  Score=230.55  Aligned_cols=242  Identities=17%  Similarity=0.291  Sum_probs=188.2

Q ss_pred             eEEEeeccCCceeeEEEEccCC--CCcccccCcccEEEEEeCCCcEEEEECCC-Ccee-eEEeccCCccCCCCceEEEee
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYN--AVDCKCKQRLGYLAVLLGNGSLEVWEVPL-LRTM-KAIYLSSMKEGTDPRFVKLEP  166 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~--~~~~~~~~~~~~las~s~dg~V~iwd~~~-~~~~-~~l~~~~~~~~~~~~~v~~~~  166 (568)
                      .+..+.+|.+ .|.+++|+|++  +         .+|++|+.||.|+|||+.+ +..+ ..+                  
T Consensus        31 ~~~~~~~h~~-~v~~~~~~~~~~~g---------~~l~~~~~dg~i~iw~~~~~~~~~~~~~------------------   82 (368)
T 3mmy_A           31 DIEVTSSPDD-SIGCLSFSPPTLPG---------NFLIAGSWANDVRCWEVQDSGQTIPKAQ------------------   82 (368)
T ss_dssp             CEECSSCCSS-CEEEEEECCTTSSS---------EEEEEEETTSEEEEEEECTTSCEEEEEE------------------
T ss_pred             eeEeccCCCC-ceEEEEEcCCCCCc---------eEEEEECCCCcEEEEEcCCCCceeEEEe------------------
Confidence            3445678888 55599999993  2         7999999999999999997 4444 333                  


Q ss_pred             cceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEE--ccCCCCC
Q 008363          167 VFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSW--APAESDS  244 (568)
Q Consensus       167 ~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~--~p~~~~~  244 (568)
                              .+|...| ++++|+  |++.+|++|+.||.|++||+.+.      ..+. +..|...|.+++|  ++++   
T Consensus        83 --------~~h~~~v-~~~~~~--~~~~~l~s~~~dg~v~iwd~~~~------~~~~-~~~~~~~v~~~~~~~~~~~---  141 (368)
T 3mmy_A           83 --------QMHTGPV-LDVCWS--DDGSKVFTASCDKTAKMWDLSSN------QAIQ-IAQHDAPVKTIHWIKAPNY---  141 (368)
T ss_dssp             --------EECSSCE-EEEEEC--TTSSEEEEEETTSEEEEEETTTT------EEEE-EEECSSCEEEEEEEECSSC---
T ss_pred             --------ccccCCE-EEEEEC--cCCCEEEEEcCCCcEEEEEcCCC------Ccee-eccccCceEEEEEEeCCCC---
Confidence                    6788999 999999  78999999999999999999866      5444 5579999999999  8887   


Q ss_pred             CCCcEEEEEcCCC-EEEEECCCCCcceeeeCCC-----------------------------------------CCCeEE
Q 008363          245 DSANVILTAGHGG-LKFWDIRDPFRPLWDIHPA-----------------------------------------PKFIYG  282 (568)
Q Consensus       245 ~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h-----------------------------------------~~~i~~  282 (568)
                         .+|++++.|+ |++||+++. .++..+..+                                         ...+.+
T Consensus       142 ---~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  217 (368)
T 3mmy_A          142 ---SCVMTGSWDKTLKFWDTRSS-NPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRC  217 (368)
T ss_dssp             ---EEEEEEETTSEEEEECSSCS-SCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEE
T ss_pred             ---CEEEEccCCCcEEEEECCCC-cEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCce
Confidence               8999999999 999999977 444443322                                         233455


Q ss_pred             EEEcCCCCE----EEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCC------------CEEEEEEecC
Q 008363          283 LDWLPDPGC----VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSF------------AIWSVQVSRL  346 (568)
Q Consensus       283 l~~sp~~~~----l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~------------~V~~l~~sp~  346 (568)
                      +++.++...    +++++.||.|++||++...        .     ...+..+.+|..            .|++++|+|+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~--------~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  284 (368)
T 3mmy_A          218 VAIFKDKQNKPTGFALGSIEGRVAIHYINPPN--------P-----AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPV  284 (368)
T ss_dssp             EEEEECTTSCEEEEEEEETTSEEEEEESSCSC--------H-----HHHSEEEECSEEC----CCCEEECCEEEEEECTT
T ss_pred             EEEcccCCCCCCeEEEecCCCcEEEEecCCCC--------c-----cccceeeeeeecccccccccccccceEEEEEecC
Confidence            555555544    8899999999999996421        1     023456777765            7999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccC
Q 008363          347 TGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPL  399 (568)
Q Consensus       347 ~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~  399 (568)
                      +.+|++++.||.|++||+.++........+. ..+.+.++++++..|++++..
T Consensus       285 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~s~d  336 (368)
T 3mmy_A          285 HGTLATVGSDGRFSFWDKDARTKLKTSEQLD-QPISACCFNHNGNIFAYASSY  336 (368)
T ss_dssp             TCCEEEEETTSCEEEEETTTTEEEEECCCCS-SCEEEEEECTTSSCEEEEECC
T ss_pred             CCEEEEEccCCeEEEEECCCCcEEEEecCCC-CCceEEEECCCCCeEEEEecc
Confidence            9999999999999999999887766544332 345566889999998887643

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.1e-25  Score=228.69  Aligned_cols=235  Identities=14%  Similarity=0.136  Sum_probs=193.5

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-------------ccCC
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-------------KEGT  157 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-------------~~~~  157 (568)
                      .+..+.+|.+ .|.+++|+|++          .+|++++.||.|+|||+.+++++..+.....             +.+.
T Consensus        66 ~~~~~~~h~~-~v~~~~~~~~~----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  134 (369)
T 3zwl_B           66 RLGTLDGHTG-TIWSIDVDCFT----------KYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAIL  134 (369)
T ss_dssp             EEEEECCCSS-CEEEEEECTTS----------SEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             hhhhhhhcCC-cEEEEEEcCCC----------CEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEec
Confidence            3445567888 55599999999          7999999999999999999888877763322             2223


Q ss_pred             CC-----ceEEEeecceec-------------ccccCCcC--ccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCC
Q 008363          158 DP-----RFVKLEPVFRCS-------------MLKCGGTQ--SIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSI  217 (568)
Q Consensus       158 ~~-----~~v~~~~~~~~~-------------~~~~~h~~--~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~  217 (568)
                      .+     ..+.+|+.....             .....|..  .+ .+++|+  +++.+|++|+.||.|++||+...    
T Consensus       135 ~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~----  207 (369)
T 3zwl_B          135 DNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA-TVAGWS--TKGKYIIAGHKDGKISKYDVSNN----  207 (369)
T ss_dssp             CCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE-EEEEEC--GGGCEEEEEETTSEEEEEETTTT----
T ss_pred             CCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce-eEEEEc--CCCCEEEEEcCCCEEEEEECCCC----
Confidence            33     778888775421             12233444  77 999999  78899999999999999999862    


Q ss_pred             CCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe
Q 008363          218 DSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF  296 (568)
Q Consensus       218 ~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~  296 (568)
                       ...+..+..|...|.+++|+|++      .+|++++.|+ |++||+++. ..+..+. +...+.+++|+|+++++++++
T Consensus       208 -~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~~d~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~~  278 (369)
T 3zwl_B          208 -YEYVDSIDLHEKSISDMQFSPDL------TYFITSSRDTNSFLVDVSTL-QVLKKYE-TDCPLNTAVITPLKEFIILGG  278 (369)
T ss_dssp             -TEEEEEEECCSSCEEEEEECTTS------SEEEEEETTSEEEEEETTTC-CEEEEEE-CSSCEEEEEECSSSSEEEEEE
T ss_pred             -cEeEEEEecCCCceeEEEECCCC------CEEEEecCCceEEEEECCCC-ceeeeec-CCCCceeEEecCCCceEEEee
Confidence             27788899999999999999998      8999999999 999999987 6666664 678899999999999999999


Q ss_pred             CCC--------------cEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 008363          297 DDG--------------AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRF  362 (568)
Q Consensus       297 ~dg--------------~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iw  362 (568)
                      .++              .|++||+..        +++        +..+.+|...|++++|+|++.+|++++.||.|++|
T Consensus       279 ~~~~~~~~~~~~~~~~~~i~~~d~~~--------~~~--------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw  342 (369)
T 3zwl_B          279 GQEAKDVTTTSANEGKFEARFYHKIF--------EEE--------IGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLH  342 (369)
T ss_dssp             CCC-------------CEEEEEETTT--------CCE--------EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             cCCCceEEEEecCCCcceeEEEecCC--------Ccc--------hhheecccCcEEEEEECCCCCEEEEEcCCCeEEEE
Confidence            988              899999843        433        46888999999999999999999999999999999


Q ss_pred             EcCCCe
Q 008363          363 QLTAKA  368 (568)
Q Consensus       363 d~~~~~  368 (568)
                      ++..+.
T Consensus       343 ~~~~~~  348 (369)
T 3zwl_B          343 HFEKSY  348 (369)
T ss_dssp             EECHHH
T ss_pred             ECcccc
Confidence            997654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.95  E-value=5.9e-26  Score=235.30  Aligned_cols=246  Identities=14%  Similarity=0.142  Sum_probs=198.0

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------------
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------------  153 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------------  153 (568)
                      +....+|.. .+.+++|+|++          .+|++++.||.|++||+.+++.+..+..+..                  
T Consensus       142 ~~~~~~~~~-~v~~~~~~~~~----------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (425)
T 1r5m_A          142 LNVLNFHRA-PIVSVKWNKDG----------THIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGV  210 (425)
T ss_dssp             EEEECCCCS-CEEEEEECTTS----------SEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBS
T ss_pred             eeeccCCCc-cEEEEEECCCC----------CEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceee
Confidence            444556877 55699999999          7999999999999999999887776654332                  


Q ss_pred             ----------ccCCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCce
Q 008363          154 ----------KEGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRP  221 (568)
Q Consensus       154 ----------~~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~  221 (568)
                                +.+..++.+.+|+...  ......+|...| .+++|+  |++.+|++++.||.|++||+...      .+
T Consensus       211 ~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i-~~~~~~--~~~~~l~~~~~d~~i~i~d~~~~------~~  281 (425)
T 1r5m_A          211 DVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPI-SVLEFN--DTNKLLLSASDDGTLRIWHGGNG------NS  281 (425)
T ss_dssp             CCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCE-EEEEEE--TTTTEEEEEETTSCEEEECSSSB------SC
T ss_pred             EEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCce-EEEEEC--CCCCEEEEEcCCCEEEEEECCCC------cc
Confidence                      2345567788888765  334456899999 999999  88899999999999999999876      77


Q ss_pred             eEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 008363          222 LLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGA  300 (568)
Q Consensus       222 ~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~  300 (568)
                      +..+.+|...|.+++|+|++       +|++++.|+ |++||+++. ..+..+..|...|.+++|+|++++|++++.||.
T Consensus       282 ~~~~~~~~~~i~~~~~~~~~-------~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  353 (425)
T 1r5m_A          282 QNCFYGHSQSIVSASWVGDD-------KVISCSMDGSVRLWSLKQN-TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ  353 (425)
T ss_dssp             SEEECCCSSCEEEEEEETTT-------EEEEEETTSEEEEEETTTT-EEEEEEECTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred             ceEecCCCccEEEEEECCCC-------EEEEEeCCCcEEEEECCCC-cEeEecccCCccEEEEEEcCCCCEEEEEECCCe
Confidence            88888999999999999985       889999998 999999987 788888899999999999999999999999999


Q ss_pred             EEEEEccccccCCC-CC---CCCccCccccceEEEecCCC--CEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          301 MRIVSLLKAAYDVP-AT---GKPFAGTKQQGLHLVNCSSF--AIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       301 I~lwd~~~~~~~~~-~~---g~~~~~~~~~~l~~~~~h~~--~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      |++||++....... ..   ...+.......+..+.+|..  .|++++|+|++.+|++++.||.|++|++.
T Consensus       354 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          354 VNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             EEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            99999965321000 00   00000000125678889976  99999999999999999999999999984

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.95  E-value=2.8e-26  Score=232.29  Aligned_cols=249  Identities=14%  Similarity=0.112  Sum_probs=189.2

Q ss_pred             EEeeccCCceeeEEEEccC---CCCcccccCcccEEEEEeCCCcEEEEECCCCc-eeeEEeccCC---------------
Q 008363           93 VLCLAHNGKVAWDVKWKPY---NAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR-TMKAIYLSSM---------------  153 (568)
Q Consensus        93 ~~~~~h~~~~v~~v~~sp~---~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~-~~~~l~~~~~---------------  153 (568)
                      ....+|.. .|.+++|+|+   +          .+|++|+.||.|++||+.+++ .+..+.+|..               
T Consensus        59 ~~~~~~~~-~v~~~~~~~~~~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~  127 (357)
T 3i2n_A           59 LREIEKAK-PIKCGTFGATSLQQ----------RYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGE  127 (357)
T ss_dssp             EEEEEESS-CEEEEECTTCCTTT----------CCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-
T ss_pred             eeeecccC-cEEEEEEcCCCCCC----------ceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCC
Confidence            34457887 4559999998   5          799999999999999999876 6666655543               


Q ss_pred             -----ccCCCCceEEEeeccee---cccccCCc----CccceEEEEcc--CCCCCEEEEEeCCCeEEEEEccCCCCCCCC
Q 008363          154 -----KEGTDPRFVKLEPVFRC---SMLKCGGT----QSIPLTMEWST--SPPHDYLLAGCHDGTVALWKFVASDSSIDS  219 (568)
Q Consensus       154 -----~~~~~~~~v~~~~~~~~---~~~~~~h~----~~V~~~v~~s~--~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~  219 (568)
                           +.++.++.+++|+....   ......|.    ..+ .+++|++  ++++.+|++|+.||.|++||+++.      
T Consensus       128 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------  200 (357)
T 3i2n_A          128 GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC-WTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM------  200 (357)
T ss_dssp             CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE-EEEEEECCCC-CCCEEEEEETTSEEEEEETTTT------
T ss_pred             CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce-EEEEEEeccCCCCCEEEEEccCCeEEEEECccC------
Confidence                 34567888999987652   22333333    366 8888421  278999999999999999999876      


Q ss_pred             ceeEEeeCCCCCeeEEEEcc---CCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeee-----CCCCCCeEEEEEcCCCC
Q 008363          220 RPLLCFSADTLPIRAVSWAP---AESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDI-----HPAPKFIYGLDWLPDPG  290 (568)
Q Consensus       220 ~~~~~~~~h~~~V~~v~~~p---~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~-----~~h~~~i~~l~~sp~~~  290 (568)
                      ... ....|...|.+++|+|   ++      .+|++++.|+ |++||+++. .++..+     .+|...|++++|+|+++
T Consensus       201 ~~~-~~~~~~~~v~~~~~~~~~~~~------~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~  272 (357)
T 3i2n_A          201 ALR-WETNIKNGVCSLEFDRKDISM------NKLVATSLEGKFHVFDMRTQ-HPTKGFASVSEKAHKSTVWQVRHLPQNR  272 (357)
T ss_dssp             EEE-EEEECSSCEEEEEESCSSSSC------CEEEEEESTTEEEEEEEEEE-ETTTEEEEEEEECCSSCEEEEEEETTEE
T ss_pred             cee-eecCCCCceEEEEcCCCCCCC------CEEEEECCCCeEEEEeCcCC-CcccceeeeccCCCcCCEEEEEECCCCC
Confidence            443 3457899999999999   77      8999999999 999999876 444333     38999999999999998


Q ss_pred             -EEEEEeCCCcEEEEEccccccCC--CCCCCCcc-CccccceEEEecCCCCEEEEEEecCCCEEE-EEeCCCeEEEEEcC
Q 008363          291 -CVILSFDDGAMRIVSLLKAAYDV--PATGKPFA-GTKQQGLHLVNCSSFAIWSVQVSRLTGMVA-YCSADGTVHRFQLT  365 (568)
Q Consensus       291 -~l~s~~~dg~I~lwd~~~~~~~~--~~~g~~~~-~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~-s~s~Dg~v~iwd~~  365 (568)
                       +|++++.||.|++||++......  ...|.... ......+..+.+|...|++++|+|++.+|+ +++.||.|++||+.
T Consensus       273 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          273 ELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             EEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             cEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence             89999999999999997533110  00111100 001145678899999999999999998888 89999999999996


Q ss_pred             CC
Q 008363          366 AK  367 (568)
Q Consensus       366 ~~  367 (568)
                      +.
T Consensus       353 ~~  354 (357)
T 3i2n_A          353 KL  354 (357)
T ss_dssp             C-
T ss_pred             Cc
Confidence            53

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.6e-26  Score=233.28  Aligned_cols=214  Identities=18%  Similarity=0.314  Sum_probs=176.0

Q ss_pred             EEEeeccCCceeeEEEEccC--CCCcccccCcccEEEEEeCCCcEEEEECCCCc--eeeEEeccCCccCCCCceEEEeec
Q 008363           92 VVLCLAHNGKVAWDVKWKPY--NAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR--TMKAIYLSSMKEGTDPRFVKLEPV  167 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~--~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~--~~~~l~~~~~~~~~~~~~v~~~~~  167 (568)
                      +..+.+|.+ .|++++|+|+  +          .+|++|+.||.|+|||+.+++  .+..+                   
T Consensus        48 ~~~~~~h~~-~v~~~~~~~~~~~----------~~l~s~~~dg~v~iwd~~~~~~~~~~~~-------------------   97 (379)
T 3jrp_A           48 IDTLTGHEG-PVWRVDWAHPKFG----------TILASCSYDGKVLIWKEENGRWSQIAVH-------------------   97 (379)
T ss_dssp             EEEECCCSS-CEEEEEECCGGGC----------SEEEEEETTSCEEEEEEETTEEEEEEEE-------------------
T ss_pred             eeEecCCCC-cEEEEEeCCCCCC----------CEEEEeccCCEEEEEEcCCCceeEeeee-------------------
Confidence            334567888 5569999987  6          799999999999999999875  33333                   


Q ss_pred             ceecccccCCcCccceEEEEccCCC--CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEcc------
Q 008363          168 FRCSMLKCGGTQSIPLTMEWSTSPP--HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAP------  239 (568)
Q Consensus       168 ~~~~~~~~~h~~~V~~~v~~s~~~~--g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p------  239 (568)
                             .+|...| .+++|+  |+  +.+|++|+.||.|++||+.....    .....+.+|...|.+++|+|      
T Consensus        98 -------~~~~~~v-~~~~~~--~~~~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~  163 (379)
T 3jrp_A           98 -------AVHSASV-NSVQWA--PHEYGPLLLVASSDGKVSVVEFKENGT----TSPIIIDAHAIGVNSASWAPATIEED  163 (379)
T ss_dssp             -------CCCSSCE-EEEEEC--CGGGCSEEEEEETTSEEEEEECCTTSC----CCEEEEECCTTCEEEEEECCCC----
T ss_pred             -------cCCCcce-EEEEeC--CCCCCCEEEEecCCCcEEEEecCCCCc----eeeEEecCCCCceEEEEEcCcccccc
Confidence                   6788888 999999  66  88999999999999999986622    45557789999999999999      


Q ss_pred             -------CCCCCCCCcEEEEEcCCC-EEEEECCCCC---cceeeeCCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEE
Q 008363          240 -------AESDSDSANVILTAGHGG-LKFWDIRDPF---RPLWDIHPAPKFIYGLDWLPD---PGCVILSFDDGAMRIVS  305 (568)
Q Consensus       240 -------~~~~~~~~~~las~s~d~-v~lwD~~~~~---~~~~~~~~h~~~i~~l~~sp~---~~~l~s~~~dg~I~lwd  305 (568)
                             ++      .+|++++.|+ |++||++...   ..+..+.+|...|++++|+|+   +.+|++++.||.|++||
T Consensus       164 ~~~~~~~~~------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd  237 (379)
T 3jrp_A          164 GEHNGTKES------RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  237 (379)
T ss_dssp             ------CTT------CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             ccccCCCCC------CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence                   46      8999999999 9999998764   234677889999999999999   89999999999999999


Q ss_pred             ccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          306 LLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       306 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                      ++...      ....     ..+.....|...|++++|+|++.+|++++.||.|++|++..
T Consensus       238 ~~~~~------~~~~-----~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          238 QDNEQ------GPWK-----KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             ESSTT------SCCE-----EEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             CCCCC------ccce-----eeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            96521      0000     11122234889999999999999999999999999999964

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=6e-27  Score=250.09  Aligned_cols=262  Identities=10%  Similarity=0.095  Sum_probs=183.0

Q ss_pred             eeccCCceeeEEEEccCCCCcc-----c-------------ccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccC
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDC-----K-------------CKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEG  156 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~-----~-------------~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~  156 (568)
                      .+.+.+ .|++|+|+|+++...     .             ..+.+.+|++++.|++|+||++.++++....        
T Consensus       129 ~~~~~~-~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~--------  199 (524)
T 2j04_B          129 IYNVGG-LVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVK--------  199 (524)
T ss_dssp             EEECCC---CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEE--------
T ss_pred             EEECCC-ceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceE--------
Confidence            344544 777999999862100     0             0011123455667888888888765532110        


Q ss_pred             CCCceEEEeecceecccccCCcCccceEEEEccC----CCCCEEEEEeCCCeEEEEEccCCCCC-----CCCceeEEeeC
Q 008363          157 TDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTS----PPHDYLLAGCHDGTVALWKFVASDSS-----IDSRPLLCFSA  227 (568)
Q Consensus       157 ~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~----~~g~~l~sgs~Dg~I~iwd~~~~~~~-----~~~~~~~~~~~  227 (568)
                                    ...+.+|.+.| .+|+|+|.    +++.+||+|+.||+|+|||+......     ....+...+.+
T Consensus       200 --------------~~~l~~~~~~V-~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~  264 (524)
T 2j04_B          200 --------------VQTIVHSFGEV-WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSL  264 (524)
T ss_dssp             --------------EEEEEECCCSE-EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECC
T ss_pred             --------------EEEEEecCCcE-EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEc
Confidence                          00115677888 99999964    34679999999999999999765321     01134567889


Q ss_pred             CCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEE--EEcCCC-CEEEEEeCCCcEEE
Q 008363          228 DTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGL--DWLPDP-GCVILSFDDGAMRI  303 (568)
Q Consensus       228 h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l--~~sp~~-~~l~s~~~dg~I~l  303 (568)
                      |...|++++|+++       ..|++|+.|+ |++||++++..+...+.+|...|++|  +|+|++ .+|++++.|++|+|
T Consensus       265 h~~~v~sv~~s~~-------~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvkl  337 (524)
T 2j04_B          265 ADSLITTFDFLSP-------TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYI  337 (524)
T ss_dssp             TTTCEEEEEESSS-------SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred             CCCCEEEEEecCC-------CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence            9999999999986       4899999999 99999997655667788999999999  578888 89999999999999


Q ss_pred             EEccccccCCCCCCCCccCccccceEEEecCCC--CEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCccee
Q 008363          304 VSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSF--AIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHF  381 (568)
Q Consensus       304 wd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~--~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~  381 (568)
                      ||++.        +        +++..+.+|..  .|++++|+|++..|++++.|++|++||+.++........+. ..+
T Consensus       338 WD~~~--------~--------~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~-~~V  400 (524)
T 2j04_B          338 FNPKD--------I--------ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRE-TTI  400 (524)
T ss_dssp             ECGGG--------H--------HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECS-SCE
T ss_pred             EECCC--------C--------CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCC-Cce
Confidence            99965        2        22345666653  58899999999999999999999999998765433222222 234


Q ss_pred             eeecccCCCCceEEcccCCCCCc
Q 008363          382 LCGSVTEDESAITVNTPLDNTPV  404 (568)
Q Consensus       382 ~~~s~~~~~~~i~~~~~~~~~~~  404 (568)
                      .+.++++++..|++++....+.+
T Consensus       401 ~sva~Sp~g~~l~Sgs~Dgtv~l  423 (524)
T 2j04_B          401 TAIGVSRLHPMVLAGSADGSLII  423 (524)
T ss_dssp             EEEECCSSCCBCEEEETTTEEEC
T ss_pred             EEEEeCCCCCeEEEEECCCEEEE
Confidence            55678899988888776665543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.5e-27  Score=243.71  Aligned_cols=266  Identities=13%  Similarity=0.181  Sum_probs=203.9

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEE----------eCCCcEEEEECCCCc---eeeEEeccCC--------------c
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVL----------LGNGSLEVWEVPLLR---TMKAIYLSSM--------------K  154 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~----------s~dg~V~iwd~~~~~---~~~~l~~~~~--------------~  154 (568)
                      .+.+++|+|++.         .+|++|          +.||.|+|||+.++.   .+..+. +..              +
T Consensus        14 ~v~~~~~sp~g~---------~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~   83 (416)
T 2pm9_A           14 RTATFAWSHDKI---------PLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQ-VDSKFNDLDWSHNNKIIA   83 (416)
T ss_dssp             ESCBCCBCSSSS---------CEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCC-CSSCEEEEEECSSSSCEE
T ss_pred             hcceEeeCCCCC---------CEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEe-cCCceEEEEECCCCCeEE
Confidence            455899999983         499999          899999999998864   332221 211              4


Q ss_pred             cCCCCceEEEeecce------ecccccCCcCccceEEEEccCCC-CCEEEEEeCCCeEEEEEccCCCCCC---CCceeEE
Q 008363          155 EGTDPRFVKLEPVFR------CSMLKCGGTQSIPLTMEWSTSPP-HDYLLAGCHDGTVALWKFVASDSSI---DSRPLLC  224 (568)
Q Consensus       155 ~~~~~~~v~~~~~~~------~~~~~~~h~~~V~~~v~~s~~~~-g~~l~sgs~Dg~I~iwd~~~~~~~~---~~~~~~~  224 (568)
                      .++.++.+++|+...      ....+.+|...| .+++|+  |+ +.+|++|+.||+|++||+.......   ....+..
T Consensus        84 ~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v-~~~~~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  160 (416)
T 2pm9_A           84 GALDNGSLELYSTNEANNAINSMARFSNHSSSV-KTVKFN--AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ  160 (416)
T ss_dssp             EEESSSCEEEECCSSTTSCCCEEEECCCSSSCC-CEEEEC--SSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC
T ss_pred             EEccCCeEEEeecccccccccchhhccCCccce-EEEEEc--CCCCCEEEEEcCCCeEEEEECCCCcccccccccccccc
Confidence            566788999998876      556677899999 999999  76 7899999999999999998763100   0012223


Q ss_pred             eeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCC------CCCeEEEEEcCCC-CEEEEEe
Q 008363          225 FSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPA------PKFIYGLDWLPDP-GCVILSF  296 (568)
Q Consensus       225 ~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h------~~~i~~l~~sp~~-~~l~s~~  296 (568)
                      +..|...|.+++|+|++     ..+|++++.|+ |++||+++. ..+..+..|      ...|++++|+|++ .+|++++
T Consensus       161 ~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  234 (416)
T 2pm9_A          161 SMSSVDEVISLAWNQSL-----AHVFASAGSSNFASIWDLKAK-KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT  234 (416)
T ss_dssp             SCCSSCCCCEEEECSSC-----TTEEEEESSSSCEEEEETTTT-EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEE
T ss_pred             ccCCCCCeeEEEeCCCC-----CcEEEEEcCCCCEEEEECCCC-CcceEEeccccccccCCceEEEEECCCCCCEEEEEE
Confidence            46799999999999994     28999999999 999999987 777777665      7889999999997 6889999


Q ss_pred             CCC---cEEEEEccccccCCCCCCCCccCccccceEEEe-cCCCCEEEEEEec-CCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          297 DDG---AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN-CSSFAIWSVQVSR-LTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       297 ~dg---~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~-~h~~~V~~l~~sp-~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                      .|+   .|++||++...       .        ++..+. +|...|++++|+| ++.+|++++.||.|++||+.++....
T Consensus       235 ~d~~~~~i~~~d~~~~~-------~--------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~  299 (416)
T 2pm9_A          235 GSDNDPSILIWDLRNAN-------T--------PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLS  299 (416)
T ss_dssp             CCSSSCCCCEEETTSTT-------S--------CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEE
T ss_pred             CCCCCceEEEEeCCCCC-------C--------CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccce
Confidence            998   99999996521       2        234666 8999999999999 89999999999999999998876554


Q ss_pred             cCCCCCcceeeeecccCCC-CceEEcccCCCC
Q 008363          372 DHSRNRPMHFLCGSVTEDE-SAITVNTPLDNT  402 (568)
Q Consensus       372 ~~~~~~~~~~~~~s~~~~~-~~i~~~~~~~~~  402 (568)
                      ....+. ....+..+++++ ..+++++....+
T Consensus       300 ~~~~~~-~~v~~~~~s~~~~~~l~s~~~d~~i  330 (416)
T 2pm9_A          300 QFPARG-NWCFKTKFAPEAPDLFACASFDNKI  330 (416)
T ss_dssp             EEECSS-SCCCCEEECTTCTTEEEECCSSSEE
T ss_pred             eecCCC-CceEEEEECCCCCCEEEEEecCCcE
Confidence            433222 233455677777 566665544333

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.95  E-value=3e-25  Score=222.64  Aligned_cols=223  Identities=14%  Similarity=0.143  Sum_probs=187.9

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc--eeeEEeccCC--------------ccCCCC
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR--TMKAIYLSSM--------------KEGTDP  159 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~--~~~~l~~~~~--------------~~~~~~  159 (568)
                      ..|.. .+.+++|+|++          .+|++++.||.|++||+.+++  ....+..+..              +.++.+
T Consensus        94 ~~~~~-~v~~~~~~~~~----------~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  162 (337)
T 1gxr_A           94 LNRDN-YIRSCKLLPDG----------CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD  162 (337)
T ss_dssp             SCTTS-BEEEEEECTTS----------SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             cCCCC-cEEEEEEcCCC----------CEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC
Confidence            36777 56699999999          799999999999999999866  4444444433              455677


Q ss_pred             ceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEE
Q 008363          160 RFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSW  237 (568)
Q Consensus       160 ~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~  237 (568)
                      +.+.+|+...  ....+.+|...+ .+++|+  |++.+|++++.||.|++||+.+.      ..+..+ .|...+.+++|
T Consensus       163 g~v~~~d~~~~~~~~~~~~~~~~i-~~~~~~--~~~~~l~~~~~dg~i~~~d~~~~------~~~~~~-~~~~~v~~~~~  232 (337)
T 1gxr_A          163 GNIAVWDLHNQTLVRQFQGHTDGA-SCIDIS--NDGTKLWTGGLDNTVRSWDLREG------RQLQQH-DFTSQIFSLGY  232 (337)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCE-EEEEEC--TTSSEEEEEETTSEEEEEETTTT------EEEEEE-ECSSCEEEEEE
T ss_pred             CcEEEEeCCCCceeeeeecccCce-EEEEEC--CCCCEEEEEecCCcEEEEECCCC------ceEeee-cCCCceEEEEE
Confidence            8899998765  445567899999 999999  78999999999999999999876      666665 57888999999


Q ss_pred             ccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCC
Q 008363          238 APAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPAT  316 (568)
Q Consensus       238 ~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~  316 (568)
                      +|++      .+|++++.++ |++||+++. . ...+..|...|.+++|+|++++|++++.||.|++||+..        
T Consensus       233 s~~~------~~l~~~~~~~~i~~~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~--------  296 (337)
T 1gxr_A          233 CPTG------EWLAVGMESSNVEVLHVNKP-D-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY--------  296 (337)
T ss_dssp             CTTS------SEEEEEETTSCEEEEETTSS-C-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--------
T ss_pred             CCCC------CEEEEEcCCCcEEEEECCCC-C-eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCC--------
Confidence            9999      8999999998 999999976 3 346778999999999999999999999999999999954        


Q ss_pred             CCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          317 GKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       317 g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                      ++.+         ....|...|.+++|+|++.+|++++.||.|++|++
T Consensus       297 ~~~~---------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          297 GASI---------FQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CCEE---------EEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CeEE---------EEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            3332         33458899999999999999999999999999997

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.95  E-value=6.1e-26  Score=228.68  Aligned_cols=262  Identities=13%  Similarity=0.075  Sum_probs=200.7

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc---eeeEEeccCC---------------ccCC
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR---TMKAIYLSSM---------------KEGT  157 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~---~~~~l~~~~~---------------~~~~  157 (568)
                      .+|.+ .|++++|+|++          .+|++++.||.|+||++.++.   ....+..+..               +.++
T Consensus         8 ~~h~~-~v~~~~~s~~~----------~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~   76 (342)
T 1yfq_A            8 QAPKD-YISDIKIIPSK----------SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT   76 (342)
T ss_dssp             SCCSS-CEEEEEEEGGG----------TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE
T ss_pred             cCCCC-cEEEEEEcCCC----------CEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEc
Confidence            46887 55699999999          799999999999999998866   2333334332               3455


Q ss_pred             CCceEEEeec-ce-ecccccC--CcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccC---------CCCCCCCceeEE
Q 008363          158 DPRFVKLEPV-FR-CSMLKCG--GTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVA---------SDSSIDSRPLLC  224 (568)
Q Consensus       158 ~~~~v~~~~~-~~-~~~~~~~--h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~---------~~~~~~~~~~~~  224 (568)
                      .++.+.+|+. .. ....+.+  |...| .+++|+  + +.+|++|+.||.|++||+.+         .      .++..
T Consensus        77 ~dg~i~~wd~~~~~~~~~~~~~~~~~~v-~~l~~~--~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~  146 (342)
T 1yfq_A           77 VQGEILKVDLIGSPSFQALTNNEANLGI-CRICKY--G-DDKLIAASWDGLIEVIDPRNYGDGVIAVKN------LNSNN  146 (342)
T ss_dssp             TTSCEEEECSSSSSSEEECBSCCCCSCE-EEEEEE--T-TTEEEEEETTSEEEEECHHHHTTBCEEEEE------SCSSS
T ss_pred             CCCeEEEEEeccCCceEeccccCCCCce-EEEEeC--C-CCEEEEEcCCCeEEEEcccccccccccccC------CeeeE
Confidence            7888999987 55 3345567  99999 999999  6 78999999999999999986         4      44445


Q ss_pred             eeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCC-CCc-ceeeeCCCCCCeEEEEEcC-CCCEEEEEeCCCc
Q 008363          225 FSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRD-PFR-PLWDIHPAPKFIYGLDWLP-DPGCVILSFDDGA  300 (568)
Q Consensus       225 ~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~-~~~-~~~~~~~h~~~i~~l~~sp-~~~~l~s~~~dg~  300 (568)
                      +. |...|.+++|+|+       . |++++.++ |++||+++ ... .......|...|.+++|+| ++.+|++++.||.
T Consensus       147 ~~-~~~~v~~~~~~~~-------~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~  217 (342)
T 1yfq_A          147 TK-VKNKIFTMDTNSS-------R-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR  217 (342)
T ss_dssp             SS-SCCCEEEEEECSS-------E-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred             Ee-eCCceEEEEecCC-------c-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc
Confidence            54 8899999999976       3 88888888 99999998 533 2344557888999999999 9999999999999


Q ss_pred             EEEEEccccccCCCCCCCCccCccccceEEEecCCC---------CEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSF---------AIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~---------~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                      |++|+++.....  ..+        ..+..+.+|..         .|++++|+|++.+|++++.||.|++||+.++....
T Consensus       218 i~i~~~~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~  287 (342)
T 1yfq_A          218 VAVEFFDDQGDD--YNS--------SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK  287 (342)
T ss_dssp             EEEEECCTTCCS--TTC--------TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEEEEcCCCcc--ccc--------ccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhh
Confidence            999999642000  001        23457777755         99999999999999999999999999999887766


Q ss_pred             cCCCC-CcceeeeecccCCCCceEEcccCC
Q 008363          372 DHSRN-RPMHFLCGSVTEDESAITVNTPLD  400 (568)
Q Consensus       372 ~~~~~-~~~~~~~~s~~~~~~~i~~~~~~~  400 (568)
                      ....+ ..+ +.+.+  +++..+++++...
T Consensus       288 ~~~~~h~~~-v~~~~--~~~~~l~s~s~Dg  314 (342)
T 1yfq_A          288 NFAKFNEDS-VVKIA--CSDNILCLATSDD  314 (342)
T ss_dssp             ECCCCSSSE-EEEEE--ECSSEEEEEEECT
T ss_pred             hhhcccCCC-ceEec--CCCCeEEEEecCC
Confidence            54443 332 22222  7777777765443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.95  E-value=1.9e-25  Score=235.64  Aligned_cols=232  Identities=12%  Similarity=0.156  Sum_probs=195.9

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC----------------c
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM----------------K  154 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~----------------~  154 (568)
                      .+..+.+|.+ .|++++|+|++           +|++|+.||+|+|||+.+++++..+.+|..                +
T Consensus       154 ~~~~~~~h~~-~V~~l~~~~~~-----------~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~  221 (464)
T 3v7d_B          154 FLLQLSGHDG-GVWALKYAHGG-----------ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV  221 (464)
T ss_dssp             EEEEECCCSS-CEEEEEECSTT-----------EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEE
T ss_pred             EEEEEeCCCc-CEEEEEEcCCC-----------EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEE
Confidence            3445568988 55699999886           899999999999999999988888876654                4


Q ss_pred             cCCCCceEEEeeccee-------------------------cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEE
Q 008363          155 EGTDPRFVKLEPVFRC-------------------------SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWK  209 (568)
Q Consensus       155 ~~~~~~~v~~~~~~~~-------------------------~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd  209 (568)
                      .++.++.+++|+....                         .....+|...+ .++.    +++.+|++|+.||+|++||
T Consensus       222 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~----~~~~~l~~~~~d~~i~vwd  296 (464)
T 3v7d_B          222 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV-RTVS----GHGNIVVSGSYDNTLIVWD  296 (464)
T ss_dssp             EEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCE-EEEE----EETTEEEEEETTSCEEEEE
T ss_pred             EEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceE-EEEc----CCCCEEEEEeCCCeEEEEE
Confidence            5677888999987652                         33456788888 7776    4578999999999999999


Q ss_pred             ccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCC
Q 008363          210 FVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPD  288 (568)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~  288 (568)
                      +.+.      .++..+.+|...|.+++|+|++      .+|++|+.|+ |++||++++ .++..+.+|...|.+++|+  
T Consensus       297 ~~~~------~~~~~~~~~~~~v~~~~~~~~~------~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~--  361 (464)
T 3v7d_B          297 VAQM------KCLYILSGHTDRIYSTIYDHER------KRCISASMDTTIRIWDLENG-ELMYTLQGHTALVGLLRLS--  361 (464)
T ss_dssp             TTTT------EEEEEECCCSSCEEEEEEETTT------TEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEC--
T ss_pred             CCCC------cEEEEecCCCCCEEEEEEcCCC------CEEEEEeCCCcEEEEECCCC-cEEEEEeCCCCcEEEEEEc--
Confidence            9876      8889999999999999999998      8999999999 999999987 8888999999999999998  


Q ss_pred             CCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363          289 PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       289 ~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~  368 (568)
                      +.+|++++.||.|++||++.        +..        ... ..|...+..++|++++.+|++++ ||.|++||+.+++
T Consensus       362 ~~~l~s~s~dg~v~vwd~~~--------~~~--------~~~-~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~  423 (464)
T 3v7d_B          362 DKFLVSAAADGSIRGWDAND--------YSR--------KFS-YHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK  423 (464)
T ss_dssp             SSEEEEEETTSEEEEEETTT--------CCE--------EEE-EECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred             CCEEEEEeCCCcEEEEECCC--------Cce--------eee-ecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence            58999999999999999954        221        122 23667788899999999999999 9999999999988


Q ss_pred             eecc
Q 008363          369 VEKD  372 (568)
Q Consensus       369 ~~~~  372 (568)
                      ....
T Consensus       424 ~~~~  427 (464)
T 3v7d_B          424 LVHA  427 (464)
T ss_dssp             EEES
T ss_pred             EEeh
Confidence            7764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.95  E-value=1.4e-26  Score=235.27  Aligned_cols=217  Identities=13%  Similarity=0.187  Sum_probs=175.3

Q ss_pred             EEEeeccCCceeeEEEEcc-CCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeeccee
Q 008363           92 VVLCLAHNGKVAWDVKWKP-YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRC  170 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp-~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~  170 (568)
                      +..+.+|.+ .|.+++|+| ++          .+|++|+.||.|+|||+.+++.+..+..                    
T Consensus       108 ~~~~~~~~~-~i~~~~~~~~~~----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------------------  156 (366)
T 3k26_A          108 IKHYVGHGN-AINELKFHPRDP----------NLLLSVSKDHALRLWNIQTDTLVAIFGG--------------------  156 (366)
T ss_dssp             EEEEESCCS-CEEEEEECSSCT----------TEEEEEETTSCEEEEETTTTEEEEEECS--------------------
T ss_pred             eeeecCCCC-cEEEEEECCCCC----------CEEEEEeCCCeEEEEEeecCeEEEEecc--------------------
Confidence            444567888 555999999 77          7999999999999999999877765411                    


Q ss_pred             cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCC----------------------CCceeEEeeCC
Q 008363          171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSI----------------------DSRPLLCFSAD  228 (568)
Q Consensus       171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~----------------------~~~~~~~~~~h  228 (568)
                         ..+|...| .+++|+  |++.+|++|+.||.|++||+.+.....                      .........+|
T Consensus       157 ---~~~~~~~v-~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (366)
T 3k26_A          157 ---VEGHRDEV-LSADYD--LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH  230 (366)
T ss_dssp             ---TTSCSSCE-EEEEEC--TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC
T ss_pred             ---cccccCce-eEEEEC--CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC
Confidence               15788898 999999  789999999999999999998652100                      00112334459


Q ss_pred             CCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCc-------------ceeeeCCCCCCeEEEEEcCC--CCEE
Q 008363          229 TLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFR-------------PLWDIHPAPKFIYGLDWLPD--PGCV  292 (568)
Q Consensus       229 ~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~-------------~~~~~~~h~~~i~~l~~sp~--~~~l  292 (568)
                      ...|.+++|+  +      .+|++++.|+ |++||+++...             .+..+..|...|++++|+|+  +++|
T Consensus       231 ~~~v~~~~~~--~------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l  302 (366)
T 3k26_A          231 RNYVDCVRWL--G------DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKML  302 (366)
T ss_dssp             SSCCCEEEEE--T------TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEE
T ss_pred             cceEEEEEEc--C------CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEE
Confidence            9999999999  5      6999999999 99999987632             25667788999999999999  9999


Q ss_pred             EEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecC--CCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          293 ILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS--SFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       293 ~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h--~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      ++++.||.|++||++.        +++..    ..+..+.+|  ...|++++|+|++.+|++++.||.|++||+.
T Consensus       303 ~~~~~dg~i~vwd~~~--------~~~~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          303 ALGNQVGKLYVWDLEV--------EDPHK----AKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEECTTSCEEEEECCS--------SSGGG----CEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEEecCCcEEEEECCC--------CCCcc----ccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            9999999999999954        43321    234577777  7999999999999999999999999999984

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.5e-26  Score=231.70  Aligned_cols=218  Identities=9%  Similarity=0.070  Sum_probs=167.7

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccC---------CccCCCCceEEEeecce------------ecccccCCcCcc
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSS---------MKEGTDPRFVKLEPVFR------------CSMLKCGGTQSI  181 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~---------~~~~~~~~~v~~~~~~~------------~~~~~~~h~~~V  181 (568)
                      .+|++|+.||.|+|||+.+++.+..+....         -++++.++.+++|....            ......+|...|
T Consensus        49 ~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v  128 (343)
T 3lrv_A           49 WVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEI  128 (343)
T ss_dssp             EEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCSEEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCE
T ss_pred             CEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCceEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCE
Confidence            799999999999999999988777664221         14677889999996542            112334677889


Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe-eCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EE
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF-SADTLPIRAVSWAPAESDSDSANVILTAGHGG-LK  259 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~  259 (568)
                       .+++|+|..++.+|++|+.||+|++||+.++      .++..+ ..|...|.+++|+|++      .+|++|+.|+ |+
T Consensus       129 -~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~------~~~~~~~~~~~~~i~~~~~~pdg------~~lasg~~dg~i~  195 (343)
T 3lrv_A          129 -IYMYGHNEVNTEYFIWADNRGTIGFQSYEDD------SQYIVHSAKSDVEYSSGVLHKDS------LLLALYSPDGILD  195 (343)
T ss_dssp             -EEEECCC---CCEEEEEETTCCEEEEESSSS------CEEEEECCCSSCCCCEEEECTTS------CEEEEECTTSCEE
T ss_pred             -EEEEcCCCCCCCEEEEEeCCCcEEEEECCCC------cEEEEEecCCCCceEEEEECCCC------CEEEEEcCCCEEE
Confidence             9999992118899999999999999999876      555555 3456689999999999      8999999999 99


Q ss_pred             EEECCCCCcceeeeCC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCE
Q 008363          260 FWDIRDPFRPLWDIHP-APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAI  338 (568)
Q Consensus       260 lwD~~~~~~~~~~~~~-h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V  338 (568)
                      +||++++......+.. |.+.|++++|+|++.+|++++ |+.|++||++..        +.+     ..+..+..|...+
T Consensus       196 iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~--------~~~-----~~~~~~~~~~~~~  261 (343)
T 3lrv_A          196 VYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKD--------VGT-----LAYPTYTIPEFKT  261 (343)
T ss_dssp             EEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSS--------TTC-----BSSCCCBC-----
T ss_pred             EEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCC--------Ccc-----eeecccccccccc
Confidence            9999988433267777 999999999999999999999 559999999753        221     1122222344444


Q ss_pred             --EEEEEecCCCEEEEEeC-CCeEEEEEcCCC
Q 008363          339 --WSVQVSRLTGMVAYCSA-DGTVHRFQLTAK  367 (568)
Q Consensus       339 --~~l~~sp~~~~l~s~s~-Dg~v~iwd~~~~  367 (568)
                        .+++|+|++.+|++++. |+.|++|++...
T Consensus       262 ~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          262 GTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence              46999999999999998 999999999543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.95  E-value=2.3e-25  Score=227.07  Aligned_cols=212  Identities=11%  Similarity=0.139  Sum_probs=177.3

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeeccee
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRC  170 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~  170 (568)
                      .+..+.+|.+ .+.+++|+|++          .+|++++.||.|++||+.+++....+.                     
T Consensus        44 ~~~~~~~h~~-~v~~~~~~~~~----------~~l~~~~~dg~i~vwd~~~~~~~~~~~---------------------   91 (372)
T 1k8k_C           44 QVHELKEHNG-QVTGVDWAPDS----------NRIVTCGTDRNAYVWTLKGRTWKPTLV---------------------   91 (372)
T ss_dssp             EEEEEECCSS-CEEEEEEETTT----------TEEEEEETTSCEEEEEEETTEEEEEEE---------------------
T ss_pred             eeeeecCCCC-cccEEEEeCCC----------CEEEEEcCCCeEEEEECCCCeeeeeEE---------------------
Confidence            3445567888 55599999999          799999999999999998876443321                     


Q ss_pred             cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCcee-EEeeCCCCCeeEEEEccCCCCCCCCcE
Q 008363          171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPL-LCFSADTLPIRAVSWAPAESDSDSANV  249 (568)
Q Consensus       171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~-~~~~~h~~~V~~v~~~p~~~~~~~~~~  249 (568)
                         ..+|...| .+++|+  +++.+|++|+.||.|++||+.....   .... ....+|...|.+++|+|++      .+
T Consensus        92 ---~~~~~~~v-~~~~~~--~~~~~l~~~~~d~~v~i~d~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~------~~  156 (372)
T 1k8k_C           92 ---ILRINRAA-RCVRWA--PNEKKFAVGSGSRVISICYFEQEND---WWVCKHIKKPIRSTVLSLDWHPNS------VL  156 (372)
T ss_dssp             ---CCCCSSCE-EEEEEC--TTSSEEEEEETTSSEEEEEEETTTT---EEEEEEECTTCCSCEEEEEECTTS------SE
T ss_pred             ---eecCCCce-eEEEEC--CCCCEEEEEeCCCEEEEEEecCCCc---ceeeeeeecccCCCeeEEEEcCCC------CE
Confidence               15678888 999999  8899999999999999999987621   1122 3346789999999999998      89


Q ss_pred             EEEEcCCC-EEEEECCC-----------------CCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccccc
Q 008363          250 ILTAGHGG-LKFWDIRD-----------------PFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAY  311 (568)
Q Consensus       250 las~s~d~-v~lwD~~~-----------------~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~  311 (568)
                      |++++.|+ |++||++.                 ...++..+..|...|++++|+|++.+|++++.|+.|++||++.   
T Consensus       157 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~---  233 (372)
T 1k8k_C          157 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK---  233 (372)
T ss_dssp             EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG---
T ss_pred             EEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCC---
Confidence            99999999 99999641                 2266777889999999999999999999999999999999954   


Q ss_pred             CCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          312 DVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       312 ~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                           ++        ++..+..|...|.+++|+|++.+|+++ .|+.|++|++.+
T Consensus       234 -----~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          234 -----KM--------AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             -----TT--------EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             -----Cc--------eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence                 43        346888999999999999999988877 899999999987

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.95  E-value=1e-25  Score=231.48  Aligned_cols=232  Identities=9%  Similarity=0.101  Sum_probs=182.2

Q ss_pred             eccCCceeeEEEEcc-CCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363           96 LAHNGKVAWDVKWKP-YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp-~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      .+|.+ .|.+++|+| ++          .+|++++.||.|+|||+.+ ..+..+..+                       
T Consensus       115 ~~h~~-~v~~~~~~~~~~----------~~l~s~~~d~~i~iwd~~~-~~~~~~~~~-----------------------  159 (383)
T 3ei3_B          115 MGPGD-AITGMKFNQFNT----------NQLFVSSIRGATTLRDFSG-SVIQVFAKT-----------------------  159 (383)
T ss_dssp             CSTTC-BEEEEEEETTEE----------EEEEEEETTTEEEEEETTS-CEEEEEECC-----------------------
T ss_pred             CCcCC-ceeEEEeCCCCC----------CEEEEEeCCCEEEEEECCC-CceEEEecc-----------------------
Confidence            46888 555999999 55          7999999999999999996 444444222                       


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCc-EEEEE
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSAN-VILTA  253 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~-~las~  253 (568)
                      .+|...| .+++|+  |++.+|++|+.||.|++||+. +      .++..+.+|...|.+++|+|++      . +|+++
T Consensus       160 ~~~~~~v-~~~~~~--~~~~~l~~~~~d~~i~i~d~~-~------~~~~~~~~h~~~v~~~~~~~~~------~~~l~s~  223 (383)
T 3ei3_B          160 DSWDYWY-CCVDVS--VSRQMLATGDSTGRLLLLGLD-G------HEIFKEKLHKAKVTHAEFNPRC------DWLMATS  223 (383)
T ss_dssp             CCSSCCE-EEEEEE--TTTTEEEEEETTSEEEEEETT-S------CEEEEEECSSSCEEEEEECSSC------TTEEEEE
T ss_pred             CCCCCCe-EEEEEC--CCCCEEEEECCCCCEEEEECC-C------CEEEEeccCCCcEEEEEECCCC------CCEEEEE
Confidence            4566788 999999  889999999999999999984 3      6788899999999999999998      5 99999


Q ss_pred             cCCC-EEEEECCCCC---cceeeeCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363          254 GHGG-LKFWDIRDPF---RPLWDIHPAPKFIYGLDWLP-DPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       254 s~d~-v~lwD~~~~~---~~~~~~~~h~~~i~~l~~sp-~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                      +.|+ |++||+++..   ..+..+ +|...|++++|+| ++.+|++++.|+.|++||++.        ++..        
T Consensus       224 ~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~--------~~~~--------  286 (383)
T 3ei3_B          224 SVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD--------WSKP--------  286 (383)
T ss_dssp             ETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB--------TTSC--------
T ss_pred             eCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC--------Cccc--------
Confidence            9999 9999999732   444555 7899999999999 999999999999999999965        3222        


Q ss_pred             EEEecC-------C----------CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCC-cceeeeecccCCC
Q 008363          329 HLVNCS-------S----------FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNR-PMHFLCGSVTEDE  390 (568)
Q Consensus       329 ~~~~~h-------~----------~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~s~~~~~  390 (568)
                      ..+.+|       .          ..+..++|+|++.+  +++.||.|++||+.++.......... .....+.++++++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g  364 (383)
T 3ei3_B          287 DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTG  364 (383)
T ss_dssp             SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTS
T ss_pred             cccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCc
Confidence            233322       2          34455677777766  77899999999999887655543322 2334444788888


Q ss_pred             CceEEcc
Q 008363          391 SAITVNT  397 (568)
Q Consensus       391 ~~i~~~~  397 (568)
                      ..|+.++
T Consensus       365 ~~l~s~s  371 (383)
T 3ei3_B          365 DVLASGM  371 (383)
T ss_dssp             SEEEEEE
T ss_pred             cEEEEec
Confidence            8887764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.95  E-value=6.6e-26  Score=233.56  Aligned_cols=214  Identities=14%  Similarity=0.220  Sum_probs=176.0

Q ss_pred             EEEeeccC----CceeeEEEEc----cCCCCcccccCcccE-EEEEeCCCcEEEEECCC------Cceee-----EEecc
Q 008363           92 VVLCLAHN----GKVAWDVKWK----PYNAVDCKCKQRLGY-LAVLLGNGSLEVWEVPL------LRTMK-----AIYLS  151 (568)
Q Consensus        92 ~~~~~~h~----~~~v~~v~~s----p~~~~~~~~~~~~~~-las~s~dg~V~iwd~~~------~~~~~-----~l~~~  151 (568)
                      +.....|.    ...+++++|+    |++          .+ |++++.||.|++||+.+      +..+.     .+...
T Consensus       109 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  178 (397)
T 1sq9_A          109 FEKLDLLDSDMKKHSFWALKWGASNDRLL----------SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT  178 (397)
T ss_dssp             EEEECCSCTTGGGSCEEEEEEECCC--------------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE
T ss_pred             ceeecccccccCCCcEEEEEEeeccCCCC----------ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeee
Confidence            44456674    2366699999    998          78 99999999999999988      55543     22110


Q ss_pred             CCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC---C
Q 008363          152 SMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA---D  228 (568)
Q Consensus       152 ~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~---h  228 (568)
                                         ......|...| .+++|+  |++ +|++|+.||.|++||+.+.      .++..+..   |
T Consensus       179 -------------------~~~~~~~~~~i-~~~~~~--~~~-~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~h  229 (397)
T 1sq9_A          179 -------------------VESPMTPSQFA-TSVDIS--ERG-LIATGFNNGTVQISELSTL------RPLYNFESQHSM  229 (397)
T ss_dssp             -------------------ECCSSSSCCCC-CEEEEC--TTS-EEEEECTTSEEEEEETTTT------EEEEEEECCC--
T ss_pred             -------------------eccccCCCCCc-eEEEEC--CCc-eEEEEeCCCcEEEEECCCC------ceeEEEeccccc
Confidence                               00113477888 999999  888 9999999999999999876      78888888   9


Q ss_pred             ---CCCeeEEEEccCCCCCCCCcEEEEEcCC---C-EEEEECCCCCcceeeeCC-------------CCCCeEEEEEcCC
Q 008363          229 ---TLPIRAVSWAPAESDSDSANVILTAGHG---G-LKFWDIRDPFRPLWDIHP-------------APKFIYGLDWLPD  288 (568)
Q Consensus       229 ---~~~V~~v~~~p~~~~~~~~~~las~s~d---~-v~lwD~~~~~~~~~~~~~-------------h~~~i~~l~~sp~  288 (568)
                         ...|.+++|+|++      .+|++++.|   + |++||+++. .++..+..             |...|++++|+|+
T Consensus       230 ~~~~~~i~~i~~~~~~------~~l~~~~~d~~~g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  302 (397)
T 1sq9_A          230 INNSNSIRSVKFSPQG------SLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS  302 (397)
T ss_dssp             -CCCCCEEEEEECSST------TEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSCEEEEEECSS
T ss_pred             cccCCccceEEECCCC------CEEEEEecCCCCceEEEEECCCC-cccceeccCcccccccccccccCCcEEEEEECCC
Confidence               9999999999998      899999999   8 999999987 77778877             9999999999999


Q ss_pred             CCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe------cC---------------CCCEEEEEEecCC
Q 008363          289 PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN------CS---------------SFAIWSVQVSRLT  347 (568)
Q Consensus       289 ~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~------~h---------------~~~V~~l~~sp~~  347 (568)
                      +++|++++.||.|++||++.        +        +.+..+.      +|               ...|++++|+|++
T Consensus       303 ~~~l~~~~~dg~i~iwd~~~--------~--------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g  366 (397)
T 1sq9_A          303 GETLCSAGWDGKLRFWDVKT--------K--------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG  366 (397)
T ss_dssp             SSEEEEEETTSEEEEEETTT--------T--------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred             CCEEEEEeCCCeEEEEEcCC--------C--------ceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence            99999999999999999954        4        3345777      77               9999999999998


Q ss_pred             ----------CEEEEEeCCCeEEEEEcCCC
Q 008363          348 ----------GMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       348 ----------~~l~s~s~Dg~v~iwd~~~~  367 (568)
                                .+|++++.||.|++|++.++
T Consensus       367 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          367 WRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             TSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             ccccccccccceEEEecCCCcEEEEEcCCC
Confidence                      79999999999999999764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.95  E-value=4e-26  Score=235.21  Aligned_cols=242  Identities=14%  Similarity=0.170  Sum_probs=189.9

Q ss_pred             EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc------eeeEEeccCCccCCCCceEEEeec
Q 008363           94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR------TMKAIYLSSMKEGTDPRFVKLEPV  167 (568)
Q Consensus        94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~------~~~~l~~~~~~~~~~~~~v~~~~~  167 (568)
                      .+.+|.+ .|++++|+| .           +|++|+.||.|+||++.+++      .+..+                   
T Consensus        11 ~~~~h~~-~i~~~~~~~-~-----------~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-------------------   58 (397)
T 1sq9_A           11 AGKAHDA-DIFSVSACN-S-----------FTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-------------------   58 (397)
T ss_dssp             ESSCSSS-CEEEEEECS-S-----------EEEEEETTSEEEEEESBCCTTCCGGGGEEEE-------------------
T ss_pred             hhhhhhc-CeEEEEecC-C-----------eEEEEcCCCEEEEEECCCcccccCCCcceEE-------------------
Confidence            3458988 556999988 4           89999999999999999876      44443                   


Q ss_pred             ceecccccCCcCccceEEEEccCCC----C---CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC-----CCCeeEE
Q 008363          168 FRCSMLKCGGTQSIPLTMEWSTSPP----H---DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD-----TLPIRAV  235 (568)
Q Consensus       168 ~~~~~~~~~h~~~V~~~v~~s~~~~----g---~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-----~~~V~~v  235 (568)
                             .+|...| ++++|+  ++    +   .+|++|+.||.|++||+...... ....+..+..|     ...|.++
T Consensus        59 -------~~h~~~v-~~~~~~--~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~  127 (397)
T 1sq9_A           59 -------FVHKSGL-HHVDVL--QAIERDAFELCLVATTSFSGDLLFYRITREDET-KKVIFEKLDLLDSDMKKHSFWAL  127 (397)
T ss_dssp             -------ECCTTCE-EEEEEE--EEEETTTEEEEEEEEEETTSCEEEEEEEECTTT-CCEEEEEECCSCTTGGGSCEEEE
T ss_pred             -------ecCCCcE-EEEEEe--cccccCCccccEEEEEcCCCCEEEEEccCCccc-ccccceeecccccccCCCcEEEE
Confidence                   6888999 999999  77    8   89999999999999999876210 00117788888     5899999


Q ss_pred             EEc----cCCCCCCCCcE-EEEEcCCC-EEEEECCC------CCccee-----ee-------CCCCCCeEEEEEcCCCCE
Q 008363          236 SWA----PAESDSDSANV-ILTAGHGG-LKFWDIRD------PFRPLW-----DI-------HPAPKFIYGLDWLPDPGC  291 (568)
Q Consensus       236 ~~~----p~~~~~~~~~~-las~s~d~-v~lwD~~~------~~~~~~-----~~-------~~h~~~i~~l~~sp~~~~  291 (568)
                      +|+    |++      .+ |++++.|+ |++||++.      . ..+.     .+       ..|...|++++|+|++ +
T Consensus       128 ~~~~~~~~~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~  199 (397)
T 1sq9_A          128 KWGASNDRLL------SHRLVATDVKGTTYIWKFHPFADESNS-LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L  199 (397)
T ss_dssp             EEECCC----------CEEEEEEETTSCEEEEEEESSSSHHHH-TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E
T ss_pred             EEeeccCCCC------ceEEEEEeCCCcEEEEeCCcccccccc-ceeeccCcceeeeeeccccCCCCCceEEEECCCc-e
Confidence            999    888      78 99999999 99999997      4 3333     55       5588999999999999 9


Q ss_pred             EEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec---C---CCCEEEEEEecCCCEEEEEeCC---CeEEEE
Q 008363          292 VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC---S---SFAIWSVQVSRLTGMVAYCSAD---GTVHRF  362 (568)
Q Consensus       292 l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~---h---~~~V~~l~~sp~~~~l~s~s~D---g~v~iw  362 (568)
                      |++++.||.|++||++.        +        +.+..+..   |   ...|.+++|+|++.+|++++.|   |.|++|
T Consensus       200 l~~~~~dg~i~i~d~~~--------~--------~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~  263 (397)
T 1sq9_A          200 IATGFNNGTVQISELST--------L--------RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY  263 (397)
T ss_dssp             EEEECTTSEEEEEETTT--------T--------EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEE
T ss_pred             EEEEeCCCcEEEEECCC--------C--------ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEE
Confidence            99999999999999953        3        33467788   8   9999999999999999999999   999999


Q ss_pred             EcCCCeeeccCCCC------------CcceeeeecccCCCCceEEcccCCCC
Q 008363          363 QLTAKAVEKDHSRN------------RPMHFLCGSVTEDESAITVNTPLDNT  402 (568)
Q Consensus       363 d~~~~~~~~~~~~~------------~~~~~~~~s~~~~~~~i~~~~~~~~~  402 (568)
                      |+.++.........            ....+.+..+++++..|++++....+
T Consensus       264 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  315 (397)
T 1sq9_A          264 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL  315 (397)
T ss_dssp             ETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             ECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeE
Confidence            99887655443320            12334556778888777776544433

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.95  E-value=9.6e-27  Score=238.39  Aligned_cols=209  Identities=12%  Similarity=0.127  Sum_probs=163.9

Q ss_pred             EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc---eeeEEeccCCccCCCCceEEEeeccee
Q 008363           94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR---TMKAIYLSSMKEGTDPRFVKLEPVFRC  170 (568)
Q Consensus        94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~---~~~~l~~~~~~~~~~~~~v~~~~~~~~  170 (568)
                      .+.+|.+ .|++++|+|++          .+|++++.||.|+|||+.++.   ....+                      
T Consensus        50 ~~~~h~~-~v~~~~~s~~~----------~~l~s~s~d~~v~vwd~~~~~~~~~~~~~----------------------   96 (377)
T 3dwl_C           50 TFSDHDK-IVTCVDWAPKS----------NRIVTCSQDRNAYVYEKRPDGTWKQTLVL----------------------   96 (377)
T ss_dssp             CBCCCSS-CEEEEEECTTT----------CCEEEEETTSSEEEC------CCCCEEEC----------------------
T ss_pred             EEecCCc-eEEEEEEeCCC----------CEEEEEeCCCeEEEEEcCCCCceeeeeEe----------------------
Confidence            3457888 55599999999          799999999999999999865   23222                      


Q ss_pred             cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC-CCCCeeEEEEccCCCCCCCCcE
Q 008363          171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA-DTLPIRAVSWAPAESDSDSANV  249 (568)
Q Consensus       171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~~~~~~  249 (568)
                          .+|...| ++++|+  |++.+|++|+.||+|++||+.....   ......+.. |...|.+++|+|++      .+
T Consensus        97 ----~~~~~~v-~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~------~~  160 (377)
T 3dwl_C           97 ----LRLNRAA-TFVRWS--PNEDKFAVGSGARVISVCYFEQEND---WWVSKHLKRPLRSTILSLDWHPNN------VL  160 (377)
T ss_dssp             ----CCCSSCE-EEEECC--TTSSCCEEEESSSCEEECCC--------CCCCEEECSSCCSCEEEEEECTTS------SE
T ss_pred             ----cccCCce-EEEEEC--CCCCEEEEEecCCeEEEEEECCccc---ceeeeEeecccCCCeEEEEEcCCC------CE
Confidence                6788999 999999  7899999999999999999986621   124667777 99999999999998      89


Q ss_pred             EEEEcCCC-EEEEECCCC-----------------CcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccccc
Q 008363          250 ILTAGHGG-LKFWDIRDP-----------------FRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAY  311 (568)
Q Consensus       250 las~s~d~-v~lwD~~~~-----------------~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~  311 (568)
                      |++++.|+ |++||++..                 ..++..+ +|...|++++|+|++++|++++.||.|++||++.   
T Consensus       161 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~---  236 (377)
T 3dwl_C          161 LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA---  236 (377)
T ss_dssp             EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECS---
T ss_pred             EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCC---
Confidence            99999999 999998632                 1345556 8999999999999999999999999999999964   


Q ss_pred             CCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          312 DVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       312 ~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                           ++..    ...+..+.+|...|++++|+|++.+|++++.|+.+ +|+..
T Consensus       237 -----~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          237 -----PEQP----PRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             -----TTSC----EEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             -----CCCc----ceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence                 3320    01245788999999999999999999998866655 77664

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.95  E-value=5.9e-26  Score=229.91  Aligned_cols=237  Identities=16%  Similarity=0.267  Sum_probs=183.2

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeC---CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLG---NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS  171 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~---dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~  171 (568)
                      ..+|.+ .|++++|+|++.         .++++|+.   ||.|+|||+.+++.....                       
T Consensus        14 ~~~h~~-~v~~~~~~p~~~---------~l~~~~s~~~~d~~v~iw~~~~~~~~~~~-----------------------   60 (357)
T 3i2n_A           14 QKGFNY-TVFDCKWVPCSA---------KFVTMGNFARGTGVIQLYEIQHGDLKLLR-----------------------   60 (357)
T ss_dssp             EEECSS-CEEEEEECTTSS---------EEEEEEC--CCCEEEEEEEECSSSEEEEE-----------------------
T ss_pred             ccCCCC-ceEEEEEcCCCc---------eEEEecCccCCCcEEEEEeCCCCccccee-----------------------
Confidence            467888 555999999984         46667765   999999999987655332                       


Q ss_pred             ccccCCcCccceEEEEccCCC---CCEEEEEeCCCeEEEEEccCCCCCCCCc-eeEEeeCCCCCeeEEEE------ccCC
Q 008363          172 MLKCGGTQSIPLTMEWSTSPP---HDYLLAGCHDGTVALWKFVASDSSIDSR-PLLCFSADTLPIRAVSW------APAE  241 (568)
Q Consensus       172 ~~~~~h~~~V~~~v~~s~~~~---g~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~~~~h~~~V~~v~~------~p~~  241 (568)
                        ..+|...| .+++|+  |+   +.+|++|+.||.|++||+...      . ++..+.+|...|.++.|      +|++
T Consensus        61 --~~~~~~~v-~~~~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~s~~~  129 (357)
T 3i2n_A           61 --EIEKAKPI-KCGTFG--ATSLQQRYLATGDFGGNLHIWNLEAP------EMPVYSVKGHKEIINAIDGIGGLGIGEGA  129 (357)
T ss_dssp             --EEEESSCE-EEEECT--TCCTTTCCEEEEETTSCEEEECTTSC------SSCSEEECCCSSCEEEEEEESGGGCC-CC
T ss_pred             --eecccCcE-EEEEEc--CCCCCCceEEEecCCCeEEEEeCCCC------CccEEEEEecccceEEEeeccccccCCCc
Confidence              04688888 999999  55   689999999999999999876      4 77888999999999965      5676


Q ss_pred             CCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCC----CeEEEE----EcCCCCEEEEEeCCCcEEEEEccccccC
Q 008363          242 SDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPK----FIYGLD----WLPDPGCVILSFDDGAMRIVSLLKAAYD  312 (568)
Q Consensus       242 ~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~----~i~~l~----~sp~~~~l~s~~~dg~I~lwd~~~~~~~  312 (568)
                            .+|++++.|+ |++||+++...++..+..|.+    .|.+++    |+|++.+|++++.||.|++||++.    
T Consensus       130 ------~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~----  199 (357)
T 3i2n_A          130 ------PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN----  199 (357)
T ss_dssp             ------CEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT----
T ss_pred             ------cEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc----
Confidence                  8999999999 999999987546777766554    788998    789999999999999999999964    


Q ss_pred             CCCCCCCccCccccceEEEecCCCCEEEEEEec---CCCEEEEEeCCCeEEEEEcCCCeeeccCC----CCCcceeeeec
Q 008363          313 VPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSR---LTGMVAYCSADGTVHRFQLTAKAVEKDHS----RNRPMHFLCGS  385 (568)
Q Consensus       313 ~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp---~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~----~~~~~~~~~~s  385 (568)
                          ++.         .....|...|.+++|+|   ++.+|++++.||.|++||+.++.......    ......+.+..
T Consensus       200 ----~~~---------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~  266 (357)
T 3i2n_A          200 ----MAL---------RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVR  266 (357)
T ss_dssp             ----TEE---------EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEE
T ss_pred             ----Cce---------eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEE
Confidence                322         34567899999999999   89999999999999999997654332211    01122344556


Q ss_pred             ccCCCC-ceEEccc
Q 008363          386 VTEDES-AITVNTP  398 (568)
Q Consensus       386 ~~~~~~-~i~~~~~  398 (568)
                      +++++. .++.+..
T Consensus       267 ~~~~~~~~l~~~~~  280 (357)
T 3i2n_A          267 HLPQNRELFLTAGG  280 (357)
T ss_dssp             EETTEEEEEEEEET
T ss_pred             ECCCCCcEEEEEeC
Confidence            666665 4554443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.94  E-value=2e-25  Score=233.59  Aligned_cols=239  Identities=15%  Similarity=0.283  Sum_probs=184.5

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeeccee
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRC  170 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~  170 (568)
                      .+..+.+|.+. +++++|+|++.         .+|++|+.||.|+||++..+......               +.    .
T Consensus       173 ~~~~~~~h~~~-v~~l~~~~~~~---------~~l~s~~~dg~i~vwd~~~~~~~~~~---------------~~----~  223 (430)
T 2xyi_A          173 PDLRLRGHQKE-GYGLSWNPNLN---------GYLLSASDDHTICLWDINATPKEHRV---------------ID----A  223 (430)
T ss_dssp             CSEEEECCSSC-CCCEEECTTST---------TEEEEECTTSCEEEEETTSCCBGGGE---------------EE----C
T ss_pred             CcEEecCCCCC-eEEEEeCCCCC---------CeEEEEeCCCeEEEEeCCCCCCCCce---------------ec----c
Confidence            34556788884 55999999983         49999999999999999874321110               00    0


Q ss_pred             cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363          171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI  250 (568)
Q Consensus       171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l  250 (568)
                      .....+|...| .+++|+|. ++.+|++++.||.|++||++....   ..++..+..|...|++|+|+|++     ..+|
T Consensus       224 ~~~~~~h~~~v-~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~~i~~~p~~-----~~~l  293 (430)
T 2xyi_A          224 KNIFTGHTAVV-EDVAWHLL-HESLFGSVADDQKLMIWDTRNNNT---SKPSHTVDAHTAEVNCLSFNPYS-----EFIL  293 (430)
T ss_dssp             SEEECCCSSCE-EEEEECSS-CTTEEEEEETTSEEEEEETTCSCS---SSCSEEEECCSSCEEEEEECSSC-----TTEE
T ss_pred             ceeecCCCCCE-eeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCC---CcceeEeecCCCCeEEEEeCCCC-----CCEE
Confidence            11226889999 99999942 567999999999999999986521   25667788999999999999998     2589


Q ss_pred             EEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363          251 LTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPG-CVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       251 as~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~-~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                      ++|+.|+ |++||++....++..+..|...|++++|+|++. +|++++.|+.|+|||++......  ..........+.+
T Consensus       294 ~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~  371 (430)
T 2xyi_A          294 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ--STEDAEDGPPELL  371 (430)
T ss_dssp             EEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCC--CHHHHHHCCTTEE
T ss_pred             EEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcccc--CccccccCCcceE
Confidence            9999999 999999986678888889999999999999995 58889999999999997632110  0000000001345


Q ss_pred             EEEecCCCCEEEEEEecCCC-EEEEEeCCCeEEEEEcCCCeee
Q 008363          329 HLVNCSSFAIWSVQVSRLTG-MVAYCSADGTVHRFQLTAKAVE  370 (568)
Q Consensus       329 ~~~~~h~~~V~~l~~sp~~~-~l~s~s~Dg~v~iwd~~~~~~~  370 (568)
                      ..+.+|...|++++|+|++. +|++++.||.|+||++....+.
T Consensus       372 ~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~~  414 (430)
T 2xyi_A          372 FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYN  414 (430)
T ss_dssp             EECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHHC
T ss_pred             EEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccccc
Confidence            67788999999999999998 9999999999999999765443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.94  E-value=3.5e-26  Score=239.64  Aligned_cols=239  Identities=14%  Similarity=0.159  Sum_probs=177.8

Q ss_pred             ceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC----------------
Q 008363           90 PRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM----------------  153 (568)
Q Consensus        90 p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~----------------  153 (568)
                      +.+..+.+|.+ .|.+|+|+|..+         .+|++|+.||+|+|||+.+... ..+..+..                
T Consensus       155 ~~~~~~~gH~~-~V~~l~f~p~~~---------~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  223 (435)
T 4e54_B          155 PTFIKGIGAGG-SITGLKFNPLNT---------NQFYASSMEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSRM  223 (435)
T ss_dssp             CEEECCCSSSC-CCCEEEECSSCT---------TEEEEECSSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTTE
T ss_pred             eeEEEccCCCC-CEEEEEEeCCCC---------CEEEEEeCCCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCCCE
Confidence            44555678998 555999999543         7999999999999999987433 23222211                


Q ss_pred             -ccCCCCceEEEeecce-ecccccCCcCccceEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCC
Q 008363          154 -KEGTDPRFVKLEPVFR-CSMLKCGGTQSIPLTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTL  230 (568)
Q Consensus       154 -~~~~~~~~v~~~~~~~-~~~~~~~h~~~V~~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~  230 (568)
                       +.++.++.+++|+... ....+.+|...| ++++|+  |++. +|++|+.||+|+|||++....   ...+....+|..
T Consensus       224 l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v-~~v~~~--p~~~~~~~s~s~d~~v~iwd~~~~~~---~~~~~~~~~h~~  297 (435)
T 4e54_B          224 VVTGDNVGNVILLNMDGKELWNLRMHKKKV-THVALN--PCCDWFLATASVDQTVKIWDLRQVRG---KASFLYSLPHRH  297 (435)
T ss_dssp             EEEECSSSBEEEEESSSCBCCCSBCCSSCE-EEEEEC--TTCSSEEEEEETTSBCCEEETTTCCS---SSCCSBCCBCSS
T ss_pred             EEEEeCCCcEeeeccCcceeEEEecccceE-Eeeeec--CCCceEEEEecCcceeeEEecccccc---cceEEEeeeccc
Confidence             4577888999998754 455667999999 999999  5554 788999999999999986532   122233457999


Q ss_pred             CeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCC------CeEEEEEcCCCCEEEEEeC------
Q 008363          231 PIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPK------FIYGLDWLPDPGCVILSFD------  297 (568)
Q Consensus       231 ~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~------~i~~l~~sp~~~~l~s~~~------  297 (568)
                      .|++++|+|++      .+|++++.|+ |+|||++++ .....+..|..      .+..+.|+|++..+++++.      
T Consensus       298 ~v~~~~~spdg------~~l~s~~~D~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  370 (435)
T 4e54_B          298 PVNAACFSPDG------ARLLTTDQKSEIRVYSASQW-DCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFK  370 (435)
T ss_dssp             CEEECCBCTTS------SEEEEEESSSCEEEEESSSS-SSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSC
T ss_pred             cccceeECCCC------CeeEEEcCCCEEEEEECCCC-ccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeE
Confidence            99999999999      8999999999 999999987 44444444432      2345678888777777642      


Q ss_pred             ------CCcEEEEEccccccCCCCCCCCccCccccceEEE-ecCCCCEEEE-EEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363          298 ------DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV-NCSSFAIWSV-QVSRLTGMVAYCSADGTVHRFQLTAKAV  369 (568)
Q Consensus       298 ------dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~-~~h~~~V~~l-~~sp~~~~l~s~s~Dg~v~iwd~~~~~~  369 (568)
                            ++.|++||..        +|+.+        ..+ .+|...|.++ +|+|+|.+|++|+ |+.|+||++++++.
T Consensus       371 ~~~~~~~~~i~iwd~~--------~g~~~--------~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          371 SCTPYELRTIDVFDGN--------SGKMM--------CQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             CSSTTCCCCEEEECSS--------SCCEE--------EEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred             EEEecCCCEEEEEECC--------CCcEE--------EEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence                  4579999984        45443        343 4788888887 6999999999876 88999999987654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.94  E-value=3.8e-25  Score=261.49  Aligned_cols=260  Identities=12%  Similarity=0.146  Sum_probs=209.0

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS  171 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~  171 (568)
                      .....+|.+ .|++++|+|++          .+||+|+.||+|+|||+.+++.+..+                       
T Consensus       608 ~~~~~~h~~-~v~~~~~s~~~----------~~l~s~~~d~~i~vw~~~~~~~~~~~-----------------------  653 (1249)
T 3sfz_A          608 RLVVRPHTD-AVYHACFSQDG----------QRIASCGADKTLQVFKAETGEKLLDI-----------------------  653 (1249)
T ss_dssp             SEEECCCSS-CEEEEEECTTS----------SEEEEEETTSCEEEEETTTCCEEEEE-----------------------
T ss_pred             eEEEecccc-cEEEEEECCCC----------CEEEEEeCCCeEEEEECCCCCEEEEe-----------------------
Confidence            344578998 55699999999          89999999999999999998888776                       


Q ss_pred             ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363          172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la  251 (568)
                         .+|...| ++++|+  |++.+|++|+.||+|+|||+.++      +++..+.+|...|.+++|+|++    ...+++
T Consensus       654 ---~~h~~~v-~~~~~s--~~~~~l~s~~~d~~v~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~----~~~~l~  717 (1249)
T 3sfz_A          654 ---KAHEDEV-LCCAFS--SDDSYIATCSADKKVKIWDSATG------KLVHTYDEHSEQVNCCHFTNKS----NHLLLA  717 (1249)
T ss_dssp             ---CCCSSCE-EEEEEC--TTSSEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEECSSS----SCCEEE
T ss_pred             ---ccCCCCE-EEEEEe--cCCCEEEEEeCCCeEEEEECCCC------ceEEEEcCCCCcEEEEEEecCC----CceEEE
Confidence               7899999 999999  88999999999999999999977      8889999999999999999964    237899


Q ss_pred             EEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCC-----------------
Q 008363          252 TAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDV-----------------  313 (568)
Q Consensus       252 s~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~-----------------  313 (568)
                      +++.|+ |++||++++ .++..+.+|...|++++|+|++++|++++.||.|++||++......                 
T Consensus       718 sg~~d~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  796 (1249)
T 3sfz_A          718 TGSNDFFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPED  796 (1249)
T ss_dssp             EEETTSCEEEEETTSS-SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------C
T ss_pred             EEeCCCeEEEEECCCc-chhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCcccc
Confidence            999999 999999987 7888889999999999999999999999999999999986531100                 


Q ss_pred             ---C-------CCCCCccC-----------ccccceEEE-ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          314 ---P-------ATGKPFAG-----------TKQQGLHLV-NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       314 ---~-------~~g~~~~~-----------~~~~~l~~~-~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                         .       ..|..+..           .....+..+ .+|...|.+++|+|++.++++++.||.|++|++.++....
T Consensus       797 ~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~  876 (1249)
T 3sfz_A          797 VEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVA  876 (1249)
T ss_dssp             CCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEE
T ss_pred             ccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceee
Confidence               0       00000000           000111222 3788999999999999999999999999999999876655


Q ss_pred             cCCCCCcceeeeecccCCCCceEEcccCCCCC
Q 008363          372 DHSRNRPMHFLCGSVTEDESAITVNTPLDNTP  403 (568)
Q Consensus       372 ~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~  403 (568)
                      ....+ ...+.+..+++++..+.+++....+.
T Consensus       877 ~~~~h-~~~v~~v~~spdg~~l~s~s~dg~v~  907 (1249)
T 3sfz_A          877 DCRGH-LSWVHGVMFSPDGSSFLTASDDQTIR  907 (1249)
T ss_dssp             EECCC-SSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ecCCC-ccceEEEEECCCCCEEEEEeCCCeEE
Confidence            43332 23455667888888888776555443

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.94  E-value=3.2e-25  Score=218.50  Aligned_cols=213  Identities=11%  Similarity=0.043  Sum_probs=160.8

Q ss_pred             eeeEEEEccC----CCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecce---ecccc
Q 008363          102 VAWDVKWKPY----NAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFR---CSMLK  174 (568)
Q Consensus       102 ~v~~v~~sp~----~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~---~~~~~  174 (568)
                      .+++++|+|+    +          .++++++.  .+.||++.+++.+...      ....++.|++|....   .....
T Consensus       113 ~v~sla~spd~~~~~----------~~l~s~g~--~~~v~~l~~g~lv~ss------~~g~d~~V~~~~~s~dG~~~~s~  174 (356)
T 2w18_A          113 EIRALFCSSDDESEK----------QVLLKSGN--IKAVLGLTKRRLVSSS------GTLSDQQVEVMTFAEDGGGKENQ  174 (356)
T ss_dssp             EEEEECC------CC----------EEEEEEEE--EEEEEEETTTEEEEEE------SSSTTCEEEEEEECTTSCEEEEE
T ss_pred             ceEEEEECCCccccc----------cEEEeCCC--eEEEEecCCCcEEEec------ccCCCCcEEEEEECCCCceeeee
Confidence            6778999999    7          68888774  4888999887777552      123577888887732   34455


Q ss_pred             cCCcCccceEEEEcc-CCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCC---CCeeEEEEccCCCCCCCCcEE
Q 008363          175 CGGTQSIPLTMEWST-SPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADT---LPIRAVSWAPAESDSDSANVI  250 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~-~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~---~~V~~v~~~p~~~~~~~~~~l  250 (568)
                      .+|...+ ..++|++ ..++.+|++|+.|++|+|||+.++      ++++++.+|.   ..+.+++|+|++      .++
T Consensus       175 ~~~~~~v-~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG------k~l~tL~g~~~~v~~v~~vafSpdG------~~l  241 (356)
T 2w18_A          175 FLMPPEE-TILTFAEVQGMQEALLGTTIMNNIVIWNLKTG------QLLKKMHIDDSYQASVCHKAYSEMG------LLF  241 (356)
T ss_dssp             EECCCSS-CEEEEEEEETSTTEEEEEETTSEEEEEETTTC------CEEEEEECCC---CCCEEEEEEETT------EEE
T ss_pred             ccCCCce-eeEEeeccCCCCceEEEecCCCcEEEEECCCC------cEEEEEcCCCcceeeeEEEEECCCC------CEE
Confidence            6888888 8999994 226789999999999999999987      8888888754   367788999998      665


Q ss_pred             ------------EEEcCCC-EEEEECCCCCcceeee-----CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccC
Q 008363          251 ------------LTAGHGG-LKFWDIRDPFRPLWDI-----HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYD  312 (568)
Q Consensus       251 ------------as~s~d~-v~lwD~~~~~~~~~~~-----~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~  312 (568)
                                  ++|+.|+ |++||..++ ..+..+     .+|...+.+.+++  +.++++++.|++|+|||+.     
T Consensus       242 vs~s~~~~~w~laSGs~D~tIklWd~~tg-k~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~-----  313 (356)
T 2w18_A          242 IVLSHPCAKESESLRSPVFQLIVINPKTT-LSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLL-----  313 (356)
T ss_dssp             EEEC------------CCEEEEEEETTTT-EEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETT-----
T ss_pred             EEeccCCCcceeeccCCCcEEEEEECCCC-EEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECC-----
Confidence                        6678888 999999977 555443     4676665555555  8899999999999999994     


Q ss_pred             CCCCCCCccCccccceEEEecCCCCEE-EEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          313 VPATGKPFAGTKQQGLHLVNCSSFAIW-SVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       313 ~~~~g~~~~~~~~~~l~~~~~h~~~V~-~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                         +|++        +.++.+|...+. .++|+|+|++|++|+.|++|+|||+
T Consensus       314 ---tGk~--------l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          314 ---LGQC--------TALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             ---TCSE--------EEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             ---CCcE--------EEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence               4644        478889987655 5899999999999999999999996

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.94  E-value=6.4e-26  Score=237.28  Aligned_cols=214  Identities=12%  Similarity=0.103  Sum_probs=169.7

Q ss_pred             EEEe-eccCCceeeEEEEcc-CCCCcccccCcccEEEEEeCCCcEEEEECCC---CceeeEEeccCCccCCCCceEEEee
Q 008363           92 VVLC-LAHNGKVAWDVKWKP-YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL---LRTMKAIYLSSMKEGTDPRFVKLEP  166 (568)
Q Consensus        92 ~~~~-~~h~~~~v~~v~~sp-~~~~~~~~~~~~~~las~s~dg~V~iwd~~~---~~~~~~l~~~~~~~~~~~~~v~~~~  166 (568)
                      +..+ .+|.+ .|++++|+| ++          .+||+|+.||+|+|||+.+   +......                  
T Consensus        55 ~~~~~~~h~~-~V~~~~~s~~~~----------~~l~s~s~dg~v~vwd~~~~~~~~~~~~~------------------  105 (437)
T 3gre_A           55 IATLMENEPN-SITSSAVSPGET----------PYLITGSDQGVIKIWNLKEIIVGEVYSSS------------------  105 (437)
T ss_dssp             EEEECTTTTS-CEEEEEEECSSS----------CEEEEEETTSEEEEEEHHHHHTTCCCSCS------------------
T ss_pred             EeeeccCCCC-ceEEEEECCCCC----------CEEEEecCCceEEEeECcccccCccccee------------------
Confidence            3344 56777 566999999 88          7999999999999999876   3311100                  


Q ss_pred             cceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEcc---CCCCCCCCceeEEeeC------------CCCC
Q 008363          167 VFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFV---ASDSSIDSRPLLCFSA------------DTLP  231 (568)
Q Consensus       167 ~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~---~~~~~~~~~~~~~~~~------------h~~~  231 (568)
                            ...+|...| ++++|+  +++.+|++|+.||+|++||+.   .+      ..+..+..            +...
T Consensus       106 ------~~~~h~~~v-~~~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~~  170 (437)
T 3gre_A          106 ------LTYDCSSTV-TQITMI--PNFDAFAVSSKDGQIIVLKVNHYQQE------SEVKFLNCECIRKINLKNFGKNEY  170 (437)
T ss_dssp             ------EEEECSSCE-EEEEEC--TTSSEEEEEETTSEEEEEEEEEEEET------TEEEEEEEEEEEEEEGGGGSSCCC
T ss_pred             ------eeccCCCCE-EEEEEe--CCCCEEEEEeCCCEEEEEEeccccCC------ceeeccccceeEEEEccCcccccC
Confidence                  003688899 999999  788999999999999999995   33      23332222            4566


Q ss_pred             eeEEE--EccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 008363          232 IRAVS--WAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHP--APKFIYGLDWLPDPGCVILSFDDGAMRIVSL  306 (568)
Q Consensus       232 V~~v~--~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~--h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~  306 (568)
                      +.++.  +++++      .+|++++.|+ |++||+++. .++..+..  |...|++++|+|++.+|++++.||.|++||+
T Consensus       171 ~~~~~~~~~~~~------~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~  243 (437)
T 3gre_A          171 AVRMRAFVNEEK------SLLVALTNLSRVIIFDIRTL-ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDI  243 (437)
T ss_dssp             EEEEEEEECSSC------EEEEEEETTSEEEEEETTTC-CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred             ceEEEEEEcCCC------CEEEEEeCCCeEEEEeCCCC-eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEc
Confidence            77776  44666      8999999999 999999987 77777777  8899999999999999999999999999999


Q ss_pred             cccccCCCCCCCCccCccccceEEEe-cCCCCEEEEEEec----CCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          307 LKAAYDVPATGKPFAGTKQQGLHLVN-CSSFAIWSVQVSR----LTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       307 ~~~~~~~~~~g~~~~~~~~~~l~~~~-~h~~~V~~l~~sp----~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                      +.        +        .++..+. .|...|++++|+|    ++.+|++++.||.|++||+.++.....
T Consensus       244 ~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~  298 (437)
T 3gre_A          244 RF--------N--------VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYA  298 (437)
T ss_dssp             TT--------T--------EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEE
T ss_pred             CC--------c--------cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEE
Confidence            54        3        3345665 7888999997665    567999999999999999988775543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.94  E-value=1.1e-24  Score=228.68  Aligned_cols=228  Identities=15%  Similarity=0.251  Sum_probs=195.8

Q ss_pred             EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------ccCCCCc
Q 008363           93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------KEGTDPR  160 (568)
Q Consensus        93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------~~~~~~~  160 (568)
                      ..+.+|.+.++.++.  +++          ++|++|+.||.|+|||+.+++.+..+.+|..            +.++.++
T Consensus       112 ~~l~~h~~~v~~~~~--~~g----------~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg  179 (445)
T 2ovr_B          112 KVLKGHDDHVITCLQ--FCG----------NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDR  179 (445)
T ss_dssp             EEEECSTTSCEEEEE--EET----------TEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTS
T ss_pred             EEecccCCCcEEEEE--EcC----------CEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCC
Confidence            346789997775544  456          7999999999999999999999888877765            5678899


Q ss_pred             eEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEc
Q 008363          161 FVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWA  238 (568)
Q Consensus       161 ~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~  238 (568)
                      .+++|+..+  +...+.+|...| .+++|+    +..|++|+.||+|++||+.++      +++..+.+|...|.+++| 
T Consensus       180 ~i~vwd~~~~~~~~~~~~h~~~v-~~~~~~----~~~l~s~s~dg~i~~wd~~~~------~~~~~~~~~~~~v~~~~~-  247 (445)
T 2ovr_B          180 TLKVWNAETGECIHTLYGHTSTV-RCMHLH----EKRVVSGSRDATLRVWDIETG------QCLHVLMGHVAAVRCVQY-  247 (445)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCE-EEEEEE----TTEEEEEETTSEEEEEESSSC------CEEEEEECCSSCEEEEEE-
T ss_pred             eEEEEECCcCcEEEEECCCCCcE-EEEEec----CCEEEEEeCCCEEEEEECCCC------cEEEEEcCCcccEEEEEE-
Confidence            999999865  556677999999 999987    468999999999999999976      788899999999999999 


Q ss_pred             cCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCC
Q 008363          239 PAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATG  317 (568)
Q Consensus       239 p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g  317 (568)
                       ++      .+|++++.|+ |++||+++. .++..+.+|...|.+++|  ++.+|++++.||.|++||++.        +
T Consensus       248 -~~------~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~--------~  309 (445)
T 2ovr_B          248 -DG------RRVVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET--------G  309 (445)
T ss_dssp             -CS------SCEEEEETTSCEEEEEGGGT-EEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT--------C
T ss_pred             -CC------CEEEEEcCCCEEEEEECCCC-cEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCC--------C
Confidence             55      6899999999 999999987 888889999999999999  789999999999999999954        4


Q ss_pred             CCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          318 KPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       318 ~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                      +        ++..+.+|...+.++.++  +.+|++++.||.|++||+.++.....
T Consensus       310 ~--------~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~  354 (445)
T 2ovr_B          310 N--------CIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQT  354 (445)
T ss_dssp             C--------EEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             C--------EEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            3        346888999999988874  67999999999999999987765544

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.94  E-value=2.2e-25  Score=230.81  Aligned_cols=242  Identities=17%  Similarity=0.283  Sum_probs=186.2

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT  184 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~  184 (568)
                      .++++|+..         .++++++.||.|+||++........                      ....+.+|...| ++
T Consensus        39 ~~~~~~~~~---------~~~~~~~~~g~i~v~~~~~~~~~~~----------------------~~~~~~~h~~~V-~~   86 (402)
T 2aq5_A           39 FCAVNPKFM---------ALICEASGGGAFLVLPLGKTGRVDK----------------------NVPLVCGHTAPV-LD   86 (402)
T ss_dssp             SEEECSSEE---------EEEBCCSSSCCEEEEETTCCEECCT----------------------TCCCBCCCSSCE-EE
T ss_pred             cEEECCCeE---------EEEEEEcCCCEEEEEECccCCCCCC----------------------CCceEecCCCCE-EE
Confidence            578888773         4566689999999999976322100                      011227899999 99


Q ss_pred             EEEccCC-CCCEEEEEeCCCeEEEEEccCCCCCCC-CceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363          185 MEWSTSP-PHDYLLAGCHDGTVALWKFVASDSSID-SRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW  261 (568)
Q Consensus       185 v~~s~~~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~-~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw  261 (568)
                      ++|+  | ++.+|++|+.||+|+|||+........ ..++..+.+|...|.+++|+|++     .++|++++.|+ |++|
T Consensus        87 ~~~~--p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-----~~~l~s~~~dg~i~iw  159 (402)
T 2aq5_A           87 IAWC--PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA-----QNVLLSAGCDNVILVW  159 (402)
T ss_dssp             EEEC--TTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSB-----TTEEEEEETTSCEEEE
T ss_pred             EEeC--CCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCC-----CCEEEEEcCCCEEEEE
Confidence            9999  6 788999999999999999986632111 14677889999999999999997     26999999999 9999


Q ss_pred             ECCCCCcceeee--CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE-ecCCCC-
Q 008363          262 DIRDPFRPLWDI--HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV-NCSSFA-  337 (568)
Q Consensus       262 D~~~~~~~~~~~--~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~-~~h~~~-  337 (568)
                      |++++ ..+..+  ..|...|++++|+|++.+|++++.||.|++||++.        ++        .+..+ .+|... 
T Consensus       160 d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--------~~--------~~~~~~~~~~~~~  222 (402)
T 2aq5_A          160 DVGTG-AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK--------GT--------VVAEKDRPHEGTR  222 (402)
T ss_dssp             ETTTT-EEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT--------TE--------EEEEEECSSCSSS
T ss_pred             ECCCC-CccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC--------Cc--------eeeeeccCCCCCc
Confidence            99987 777788  78999999999999999999999999999999954        32        33566 678776 


Q ss_pred             EEEEEEecCCCEEEEE---eCCCeEEEEEcCCCeeec-cCCCCCcceeeeecccCCCCceEE-cccCCCC
Q 008363          338 IWSVQVSRLTGMVAYC---SADGTVHRFQLTAKAVEK-DHSRNRPMHFLCGSVTEDESAITV-NTPLDNT  402 (568)
Q Consensus       338 V~~l~~sp~~~~l~s~---s~Dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~i~~-~~~~~~~  402 (568)
                      +.++.|+|++.+|+++   +.|+.|++||+.+..... ...........+..+++++..+.+ +.....+
T Consensus       223 ~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i  292 (402)
T 2aq5_A          223 PVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSI  292 (402)
T ss_dssp             CCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCE
T ss_pred             ceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeE
Confidence            8999999999999999   799999999998754311 111111223455577888887754 4334433

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.8e-25  Score=252.82  Aligned_cols=208  Identities=12%  Similarity=0.100  Sum_probs=173.8

Q ss_pred             ceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecce
Q 008363           90 PRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFR  169 (568)
Q Consensus        90 p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~  169 (568)
                      +......+|.+ .|++++|+|++          .+||+|+.||+|+||+..+.++...                      
T Consensus         8 ~~~~~~~gh~~-~V~~lafspdg----------~~lAsgs~Dg~I~lw~~~~~~~~~~----------------------   54 (902)
T 2oaj_A            8 LAETNKYGMSS-KPIAAAFDFTQ----------NLLAIATVTGEVHIYGQQQVEVVIK----------------------   54 (902)
T ss_dssp             EEEEEEEECSS-CEEEEEEETTT----------TEEEEEETTSEEEEECSTTCEEEEE----------------------
T ss_pred             eccccccCCCC-CcEEEEECCCC----------CEEEEEeCCCEEEEEeCCCcEEEEE----------------------
Confidence            44555679988 45599999999          8999999999999999987655433                      


Q ss_pred             ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcE
Q 008363          170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV  249 (568)
Q Consensus       170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~  249 (568)
                           ..|...| .+|+|+  | |.+|++++.|++|+|||+.++      +++..+. |...|++++|+|++      .+
T Consensus        55 -----~~~~~~V-~~l~fs--p-g~~L~S~s~D~~v~lWd~~~~------~~~~~~~-~~~~V~~v~~sp~g------~~  112 (902)
T 2oaj_A           55 -----LEDRSAI-KEMRFV--K-GIYLVVINAKDTVYVLSLYSQ------KVLTTVF-VPGKITSIDTDASL------DW  112 (902)
T ss_dssp             -----CSSCCCE-EEEEEE--T-TTEEEEEETTCEEEEEETTTC------SEEEEEE-CSSCEEEEECCTTC------SE
T ss_pred             -----cCCCCCE-EEEEEc--C-CCEEEEEECcCeEEEEECCCC------cEEEEEc-CCCCEEEEEECCCC------CE
Confidence                 4567788 999999  6 779999999999999999876      6777775 77899999999999      89


Q ss_pred             EEEEcCCC-EEEEECCCCCcce-----------eeeCCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEccccccCCCCC
Q 008363          250 ILTAGHGG-LKFWDIRDPFRPL-----------WDIHPAPKFIYGLDWLPD-PGCVILSFDDGAMRIVSLLKAAYDVPAT  316 (568)
Q Consensus       250 las~s~d~-v~lwD~~~~~~~~-----------~~~~~h~~~i~~l~~sp~-~~~l~s~~~dg~I~lwd~~~~~~~~~~~  316 (568)
                      |++|+.|+ |++||+.+. ...           ..+.+|.+.|++++|+|+ +..|++|+.||.| +||++.        
T Consensus       113 l~sgs~dg~V~lwd~~~~-~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~--------  182 (902)
T 2oaj_A          113 MLIGLQNGSMIVYDIDRD-QLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE--------  182 (902)
T ss_dssp             EEEEETTSCEEEEETTTT-EEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT--------
T ss_pred             EEEEcCCCcEEEEECCCC-ccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC--------
Confidence            99999999 999999976 322           234679999999999996 5788999999999 999954        


Q ss_pred             CCCccCccccceEEEecC------------------CCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee
Q 008363          317 GKPFAGTKQQGLHLVNCS------------------SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE  370 (568)
Q Consensus       317 g~~~~~~~~~~l~~~~~h------------------~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~  370 (568)
                      +++        +..+.+|                  ...|++++|+|+|.+|++++.||.|++||+.+++..
T Consensus       183 ~~~--------~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~  246 (902)
T 2oaj_A          183 NEI--------KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI  246 (902)
T ss_dssp             TEE--------EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred             Cce--------EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence            322        3444444                  578999999999999999999999999999887653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.94  E-value=5.3e-25  Score=230.54  Aligned_cols=234  Identities=12%  Similarity=0.210  Sum_probs=192.8

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------ccCCC
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------KEGTD  158 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------~~~~~  158 (568)
                      .+..+.+|.+ .|.+++|  ++          .+|++|+.||.|+|||+.+++.+..+..|..            +.++.
T Consensus       165 ~~~~~~~h~~-~v~~l~~--~~----------~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~  231 (435)
T 1p22_A          165 CKRILTGHTG-SVLCLQY--DE----------RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK  231 (435)
T ss_dssp             EEEEECCCSS-CEEEEEC--CS----------SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEET
T ss_pred             EEEEEcCCCC-cEEEEEE--CC----------CEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeC
Confidence            3445668988 4459998  56          7999999999999999999999888877655            56778


Q ss_pred             CceEEEeeccee-----cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCee
Q 008363          159 PRFVKLEPVFRC-----SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIR  233 (568)
Q Consensus       159 ~~~v~~~~~~~~-----~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~  233 (568)
                      ++.+++|+....     .....+|...| .+++|.    +.+|++|+.||+|++||+.+.      .++..+.+|...|.
T Consensus       232 dg~i~vwd~~~~~~~~~~~~~~~~~~~v-~~~~~~----~~~l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~  300 (435)
T 1p22_A          232 DRSIAVWDMASPTDITLRRVLVGHRAAV-NVVDFD----DKYIVSASGDRTIKVWNTSTC------EFVRTLNGHKRGIA  300 (435)
T ss_dssp             TSCEEEEECSSSSCCEEEEEECCCSSCE-EEEEEE----TTEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEE
T ss_pred             CCcEEEEeCCCCCCceeeeEecCCCCcE-EEEEeC----CCEEEEEeCCCeEEEEECCcC------cEEEEEcCCCCcEE
Confidence            899999988652     24567899999 999985    679999999999999999976      78889999999999


Q ss_pred             EEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccC
Q 008363          234 AVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYD  312 (568)
Q Consensus       234 ~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~  312 (568)
                      +++|+  +      .+|++|+.|+ |++||++++ .++..+.+|...|++++|  ++.+|++|+.||.|++||++.....
T Consensus       301 ~~~~~--~------~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~  369 (435)
T 1p22_A          301 CLQYR--D------RLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDP  369 (435)
T ss_dssp             EEEEE--T------TEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTST
T ss_pred             EEEeC--C------CEEEEEeCCCeEEEEECCCC-CEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCc
Confidence            99994  4      6999999999 999999987 888889999999999999  6889999999999999999653311


Q ss_pred             CCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363          313 VPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       313 ~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~  368 (568)
                      ....       ...++..+.+|...|++++|  ++.+|++++.||.|++||+.+..
T Consensus       370 ~~~~-------~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          370 RAPA-------GTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP  416 (435)
T ss_dssp             TSCT-------TTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred             cccc-------cchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence            1000       11256788999999999999  78899999999999999997654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.94  E-value=3e-24  Score=225.39  Aligned_cols=257  Identities=13%  Similarity=0.228  Sum_probs=210.7

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------ccCCC
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------KEGTD  158 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------~~~~~  158 (568)
                      .+..+.+|.+ .|++++|+  +          .+|++|+.||+|++||+.+++.+..+.+|..            +.++.
T Consensus       151 ~~~~~~~h~~-~v~~~~~~--~----------~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~  217 (445)
T 2ovr_B          151 CLRTLVGHTG-GVWSSQMR--D----------NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSR  217 (445)
T ss_dssp             EEEECCCCSS-CEEEEEEE--T----------TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEET
T ss_pred             EEEEEcCCCC-CEEEEEec--C----------CEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeC
Confidence            3445568888 55699997  4          5899999999999999999999888877765            56788


Q ss_pred             CceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEE
Q 008363          159 PRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVS  236 (568)
Q Consensus       159 ~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~  236 (568)
                      ++.+++|+...  +...+.+|...| .+++|.    +.+|++|+.||.|++||+.+.      .++..+.+|...|.+++
T Consensus       218 dg~i~~wd~~~~~~~~~~~~~~~~v-~~~~~~----~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~  286 (445)
T 2ovr_B          218 DATLRVWDIETGQCLHVLMGHVAAV-RCVQYD----GRRVVSGAYDFMVKVWDPETE------TCLHTLQGHTNRVYSLQ  286 (445)
T ss_dssp             TSEEEEEESSSCCEEEEEECCSSCE-EEEEEC----SSCEEEEETTSCEEEEEGGGT------EEEEEECCCSSCEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEcCCcccE-EEEEEC----CCEEEEEcCCCEEEEEECCCC------cEeEEecCCCCceEEEE
Confidence            99999999865  555667899999 999984    679999999999999999976      88889999999999999


Q ss_pred             EccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCC
Q 008363          237 WAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPA  315 (568)
Q Consensus       237 ~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~  315 (568)
                      |  ++      .+|++++.|+ |++||++++ .++..+.+|...+.++.++  +.+|++++.||.|++||++.       
T Consensus       287 ~--~~------~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~-------  348 (445)
T 2ovr_B          287 F--DG------IHVVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKT-------  348 (445)
T ss_dssp             E--CS------SEEEEEETTSCEEEEETTTC-CEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTT-------
T ss_pred             E--CC------CEEEEEeCCCeEEEEECCCC-CEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCC-------
Confidence            9  55      7999999999 999999987 7888889999999988875  67999999999999999953       


Q ss_pred             CCCCccCccccceEEEec---CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCC----CCCcceeeeecccC
Q 008363          316 TGKPFAGTKQQGLHLVNC---SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHS----RNRPMHFLCGSVTE  388 (568)
Q Consensus       316 ~g~~~~~~~~~~l~~~~~---h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~----~~~~~~~~~~s~~~  388 (568)
                       ++.        +..+.+   |...|++++|+  +.+|++++.||.|++||+.+++......    ........+.++++
T Consensus       349 -~~~--------~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  417 (445)
T 2ovr_B          349 -GQC--------LQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN  417 (445)
T ss_dssp             -CCE--------EEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred             -CcE--------EEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC
Confidence             433        356665   88999999995  6899999999999999999887654431    12223345556777


Q ss_pred             CCCceEEcccCC
Q 008363          389 DESAITVNTPLD  400 (568)
Q Consensus       389 ~~~~i~~~~~~~  400 (568)
                      ++..+++++..+
T Consensus       418 ~~~~la~~~~dg  429 (445)
T 2ovr_B          418 TKLVCAVGSRNG  429 (445)
T ss_dssp             SEEEEEEECSSS
T ss_pred             CEEEEEEcccCC
Confidence            777777765444

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.94  E-value=1.4e-24  Score=224.80  Aligned_cols=232  Identities=13%  Similarity=0.170  Sum_probs=186.4

Q ss_pred             EEEeeccCCce-eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeeccee
Q 008363           92 VVLCLAHNGKV-AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRC  170 (568)
Q Consensus        92 ~~~~~~h~~~~-v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~  170 (568)
                      +....+|...+ +.++.|++.            .+++++.||.|+|||+.+++....+.                     
T Consensus        84 ~~~~~~~~~~~~~~~~~~s~~------------~l~~~~~d~~v~lw~~~~~~~~~~~~---------------------  130 (401)
T 4aez_A           84 VLDAPGIIDDYYLNLLDWSNL------------NVVAVALERNVYVWNADSGSVSALAE---------------------  130 (401)
T ss_dssp             EEECTTCCCCTTCBCEEECTT------------SEEEEEETTEEEEEETTTCCEEEEEE---------------------
T ss_pred             eeeCCCCcCCceEEEEeecCC------------CEEEEECCCeEEEeeCCCCcEeEeee---------------------
Confidence            33344665532 335777753            36778899999999999987765541                     


Q ss_pred             cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363          171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI  250 (568)
Q Consensus       171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l  250 (568)
                          ..|...| ++++|+  |++.+|++|+.||.|++||+.++      ..+..+.+|...|.+++|+  +      .+|
T Consensus       131 ----~~~~~~v-~~v~~s--~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~--~------~~l  189 (401)
T 4aez_A          131 ----TDESTYV-ASVKWS--HDGSFLSVGLGNGLVDIYDVESQ------TKLRTMAGHQARVGCLSWN--R------HVL  189 (401)
T ss_dssp             ----CCTTCCE-EEEEEC--TTSSEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEEE--T------TEE
T ss_pred             ----cCCCCCE-EEEEEC--CCCCEEEEECCCCeEEEEECcCC------eEEEEecCCCCceEEEEEC--C------CEE
Confidence                3478888 999999  78999999999999999999876      7888999999999999994  4      699


Q ss_pred             EEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363          251 LTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH  329 (568)
Q Consensus       251 as~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~  329 (568)
                      ++++.|+ |++||++.....+..+.+|...|.+++|+|++.+|++++.|+.|++||++.        +        .++.
T Consensus       190 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~--------~--------~~~~  253 (401)
T 4aez_A          190 SSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS--------S--------IPKF  253 (401)
T ss_dssp             EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC--------S--------SEEE
T ss_pred             EEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC--------C--------CccE
Confidence            9999999 999999966577888889999999999999999999999999999999954        3        3346


Q ss_pred             EEecCCCCEEEEEEecCC-CEEEEEe--CCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEE
Q 008363          330 LVNCSSFAIWSVQVSRLT-GMVAYCS--ADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITV  395 (568)
Q Consensus       330 ~~~~h~~~V~~l~~sp~~-~~l~s~s--~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~  395 (568)
                      .+..|...|.+++|+|++ .++++++  .|+.|++||+.++.........  ....+..+++++..+.+
T Consensus       254 ~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~  320 (401)
T 4aez_A          254 TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG--SQVTSLIWSPHSKEIMS  320 (401)
T ss_dssp             EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS--SCEEEEEECSSSSEEEE
T ss_pred             EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC--CcEEEEEECCCCCeEEE
Confidence            788899999999999986 5666665  7999999999887665443221  23445567777777666

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.5e-25  Score=232.92  Aligned_cols=244  Identities=14%  Similarity=0.193  Sum_probs=177.1

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC----c---cCCCCceEEEeecceecccc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM----K---EGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~----~---~~~~~~~v~~~~~~~~~~~~  174 (568)
                      .|++|+|+|+|          .+||+++.|++|+  |...++++   .+|..    +   ..+.++.+.+|....-....
T Consensus        17 ~v~sv~~SpDG----------~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~   81 (588)
T 2j04_A           17 WKNNLTWARDG----------TLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLEFENKLDFELAQQNGLLN   81 (588)
T ss_dssp             SSCCEEECTTS----------CEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCCCCCTTTTSCCCSSCSST
T ss_pred             cEEEEEECCCC----------CEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCCCcceEEEEeCCCceEee
Confidence            45599999999          8999999999999  76555544   33332    1   01123333333322111122


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCC-----CeeEEEEccCCCCCCCCcE
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTL-----PIRAVSWAPAESDSDSANV  249 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~~p~~~~~~~~~~  249 (568)
                      ..|...| ++++|+  |+|.+||+++.||+|+|||..        .++..+. |..     .|.+++|+|+|      ++
T Consensus        82 ~~~~~~V-~~vawS--PdG~~LAs~s~dg~V~iwd~~--------~~l~~l~-~~~~~~~~sv~svafSPDG------~~  143 (588)
T 2j04_A           82 SQPVCYP-RVCKPS--PIDDWMAVLSNNGNVSVFKDN--------KMLTNLD-SKGNLSSRTYHCFEWNPIE------SS  143 (588)
T ss_dssp             TSCSCCE-EEEEEC--SSSSCEEEEETTSCEEEEETT--------EEEEECC-CSSCSTTTCEEEEEECSSS------SC
T ss_pred             cCCCCcE-EEEEEC--CCCCEEEEEeCCCcEEEEeCC--------ceeeecc-CCCccccccEEEEEEcCCC------CE
Confidence            2667888 999999  899999999999999999954        4666666 665     49999999999      89


Q ss_pred             EEEEcCCC-EEEEECCCCCc------ceeee----CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCC
Q 008363          250 ILTAGHGG-LKFWDIRDPFR------PLWDI----HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGK  318 (568)
Q Consensus       250 las~s~d~-v~lwD~~~~~~------~~~~~----~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~  318 (568)
                      ||+|+.|+ |++||+.++..      .+..+    .+|...|.+++|+|+|  |++++.|++|++||+..        +.
T Consensus       144 LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~--------~~  213 (588)
T 2j04_A          144 IVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSA--------SS  213 (588)
T ss_dssp             EEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCS--------SS
T ss_pred             EEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCC--------Cc
Confidence            99999999 99999998632      24565    6788999999999999  88999999999999943        22


Q ss_pred             CccCccccceEEE-ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecc--cCCCCceEE
Q 008363          319 PFAGTKQQGLHLV-NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSV--TEDESAITV  395 (568)
Q Consensus       319 ~~~~~~~~~l~~~-~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~i~~  395 (568)
                      ..     ...+++ .+|...|.+++|+  +.+||+++ |++|++||+.++........+.. .+...++  ++++..+++
T Consensus       214 ~~-----~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~-~V~~va~~~s~d~~~La~  284 (588)
T 2j04_A          214 HQ-----PVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLE-NFHIIPLNHEKESTILLM  284 (588)
T ss_dssp             SC-----CCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCS-CCCEEEETTCSSCEEEEE
T ss_pred             cc-----cceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCc-eEEEEEeeeCCCCCEEEE
Confidence            11     123456 4788999999999  68999987 79999999998776332212222 2222355  666655555


Q ss_pred             cc
Q 008363          396 NT  397 (568)
Q Consensus       396 ~~  397 (568)
                      ..
T Consensus       285 a~  286 (588)
T 2j04_A          285 SN  286 (588)
T ss_dssp             CS
T ss_pred             Ec
Confidence            43

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.94  E-value=1.5e-24  Score=226.99  Aligned_cols=223  Identities=12%  Similarity=0.210  Sum_probs=188.7

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------ccCCCCceEE
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------KEGTDPRFVK  163 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------~~~~~~~~v~  163 (568)
                      ..|.. .|.++.|  ++          .+|++|+.||.|+|||+.+++....+.+|..            +.++.++.++
T Consensus       130 ~~~~~-~v~~~~~--d~----------~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~  196 (435)
T 1p22_A          130 SETSK-GVYCLQY--DD----------QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVR  196 (435)
T ss_dssp             CSSCC-CEEEEEC--CS----------SEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEE
T ss_pred             cCCCC-cEEEEEE--CC----------CEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEE
Confidence            34555 4447766  66          7999999999999999999999888887765            5678899999


Q ss_pred             Eeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCC
Q 008363          164 LEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAE  241 (568)
Q Consensus       164 ~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~  241 (568)
                      +|+..+  +...+.+|...| .+++|+    +.+|++|+.||+|++||+.+...   ......+.+|...|.+++|  ++
T Consensus       197 vwd~~~~~~~~~~~~h~~~v-~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~~~~v~~~~~--~~  266 (435)
T 1p22_A          197 VWDVNTGEMLNTLIHHCEAV-LHLRFN----NGMMVTCSKDRSIAVWDMASPTD---ITLRRVLVGHRAAVNVVDF--DD  266 (435)
T ss_dssp             EEESSSCCEEEEECCCCSCE-EEEECC----TTEEEEEETTSCEEEEECSSSSC---CEEEEEECCCSSCEEEEEE--ET
T ss_pred             EEECCCCcEEEEEcCCCCcE-EEEEEc----CCEEEEeeCCCcEEEEeCCCCCC---ceeeeEecCCCCcEEEEEe--CC
Confidence            999876  555667899999 999987    35999999999999999987622   1233678899999999999  45


Q ss_pred             CCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCc
Q 008363          242 SDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPF  320 (568)
Q Consensus       242 ~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~  320 (568)
                            .+|++|+.|+ |++||+++. ..+..+.+|...|.++.|+  +.+|++|+.||.|++||++.        ++  
T Consensus       267 ------~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~--------~~--  327 (435)
T 1p22_A          267 ------KYIVSASGDRTIKVWNTSTC-EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC--------GA--  327 (435)
T ss_dssp             ------TEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT--------CC--
T ss_pred             ------CEEEEEeCCCeEEEEECCcC-cEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCC--------CC--
Confidence                  6999999999 999999987 7888888999999999995  78999999999999999953        43  


Q ss_pred             cCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363          321 AGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       321 ~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~  368 (568)
                            ++..+.+|...|.+++|  ++.+|++|+.||.|++||+.++.
T Consensus       328 ------~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~  367 (435)
T 1p22_A          328 ------CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAAL  367 (435)
T ss_dssp             ------EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred             ------EEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence                  34688999999999999  78999999999999999996543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.94  E-value=5.4e-24  Score=221.83  Aligned_cols=227  Identities=16%  Similarity=0.244  Sum_probs=185.8

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      +..|+|++++           +||+|. |++|+|||+.++++...+..                        .+|...| 
T Consensus       108 ~~~l~wS~~n-----------~lAvgl-d~tV~lWd~~tg~~~~~~~~------------------------~~~~~~V-  150 (420)
T 4gga_A          108 LNLVDWSSGN-----------VLAVAL-DNSVYLWSASSGDILQLLQM------------------------EQPGEYI-  150 (420)
T ss_dssp             CBCEEECTTS-----------EEEEEE-TTEEEEEETTTCCEEEEEEC------------------------CSTTCCE-
T ss_pred             ceeEEECCCC-----------EEEEEe-CCEEEEEECCCCCEEEEEEe------------------------cCCCCcE-
Confidence            3479999764           888876 89999999999988766522                        5788889 


Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW  261 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw  261 (568)
                      ++|+|+  |+|.+||+|+.||+|+|||+.++      +++..+.+|...+.+++|+  +      .+|++|+.|+ +++|
T Consensus       151 ~sv~fs--pdg~~lasgs~Dg~v~iWd~~~~------~~~~~~~~h~~~v~~~s~~--~------~~l~sgs~d~~i~~~  214 (420)
T 4gga_A          151 SSVAWI--KEGNYLAVGTSSAEVQLWDVQQQ------KRLRNMTSHSARVGSLSWN--S------YILSSGSRSGHIHHH  214 (420)
T ss_dssp             EEEEEC--TTSSEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEEE--T------TEEEEEETTSEEEEE
T ss_pred             EEEEEC--CCCCEEEEEECCCeEEEEEcCCC------cEEEEEeCCCCceEEEeeC--C------CEEEEEeCCCceeEe
Confidence            999999  89999999999999999999977      8899999999999999875  3      5999999999 9999


Q ss_pred             ECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEE
Q 008363          262 DIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSV  341 (568)
Q Consensus       262 D~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l  341 (568)
                      |.+.....+..+.+|...+..+.|+|++.+|++++.|+.|++||...        ++...    ..+.....|...|.++
T Consensus       215 d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~--------~~~~~----~~~~~~~~~~~~V~~~  282 (420)
T 4gga_A          215 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP--------GEGGW----VPLQTFTQHQGAVKAV  282 (420)
T ss_dssp             ETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC--------CSSCS----CCSEEECCCSSCEEEE
T ss_pred             eecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc--------ccccc----eeeeeecccCCceeee
Confidence            99987777788899999999999999999999999999999999964        22211    3456788899999999


Q ss_pred             EEecCC-CEEEEE--eCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEc
Q 008363          342 QVSRLT-GMVAYC--SADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVN  396 (568)
Q Consensus       342 ~~sp~~-~~l~s~--s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~  396 (568)
                      +|+|.+ .+++++  +.|++|++||+.++..........  ...+..+.+++..+.++
T Consensus       283 ~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~--~v~~~~~~~~~~~lv~~  338 (420)
T 4gga_A          283 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCSILWSPHYKELISG  338 (420)
T ss_dssp             EECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS--CEEEEEEETTTTEEEEE
T ss_pred             eeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc--ceeeeeecCCCCeEEEE
Confidence            999986 566554  479999999999887665433322  23333566677666654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.2e-25  Score=233.24  Aligned_cols=228  Identities=14%  Similarity=0.092  Sum_probs=173.9

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECC---CCceeeEEeccCCccCCCCceEEEeecceecc
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVP---LLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSM  172 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~---~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~  172 (568)
                      ..|.+ .|.+++|+|++          .+|++|+.||.|+|||+.   .++....+..+              .+..+..
T Consensus       108 ~~h~~-~v~~~~~~~~~----------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--------------~i~~~~~  162 (437)
T 3gre_A          108 YDCSS-TVTQITMIPNF----------DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--------------CIRKINL  162 (437)
T ss_dssp             EECSS-CEEEEEECTTS----------SEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--------------EEEEEEG
T ss_pred             ccCCC-CEEEEEEeCCC----------CEEEEEeCCCEEEEEEeccccCCceeeccccc--------------eeEEEEc
Confidence            46888 55599999998          799999999999999995   55555544221              1111111


Q ss_pred             cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC--CCCCeeEEEEccCCCCCCCCcEE
Q 008363          173 LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA--DTLPIRAVSWAPAESDSDSANVI  250 (568)
Q Consensus       173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~~~~~~l  250 (568)
                      ...++...+ .++.+.+.+++.+|++|+.||+|++||+++.      .++..+.+  |...|.+++|+|++      .+|
T Consensus       163 ~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~h~~~v~~~~~s~~~------~~l  229 (437)
T 3gre_A          163 KNFGKNEYA-VRMRAFVNEEKSLLVALTNLSRVIIFDIRTL------ERLQIIENSPRHGAVSSICIDEEC------CVL  229 (437)
T ss_dssp             GGGSSCCCE-EEEEEEECSSCEEEEEEETTSEEEEEETTTC------CEEEEEECCGGGCCEEEEEECTTS------CEE
T ss_pred             cCcccccCc-eEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------eeeEEEccCCCCCceEEEEECCCC------CEE
Confidence            111255666 8888665688999999999999999999876      78888888  89999999999998      899


Q ss_pred             EEEcCCC-EEEEECCCCCcceeeeC-CCCCCeEEEEEcC----CCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCc-
Q 008363          251 LTAGHGG-LKFWDIRDPFRPLWDIH-PAPKFIYGLDWLP----DPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGT-  323 (568)
Q Consensus       251 as~s~d~-v~lwD~~~~~~~~~~~~-~h~~~i~~l~~sp----~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~-  323 (568)
                      ++|+.|+ |++||++.. .++..+. .|...|++++|+|    ++.+|++++.||.|++||++.        ++.+... 
T Consensus       230 ~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~--------~~~~~~~~  300 (437)
T 3gre_A          230 ILGTTRGIIDIWDIRFN-VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK--------GHCQYAFI  300 (437)
T ss_dssp             EEEETTSCEEEEETTTT-EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT--------TEEEEEEE
T ss_pred             EEEcCCCeEEEEEcCCc-cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC--------CcEEEEEE
Confidence            9999999 999999986 7777765 7888999996665    677999999999999999964        2211000 


Q ss_pred             ---------cccc------eEEEec--CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          324 ---------KQQG------LHLVNC--SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       324 ---------~~~~------l~~~~~--h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                               ...+      -..+.+  |...|++++|+ ++.+|++++.||.|++||+.++....
T Consensus       301 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~  364 (437)
T 3gre_A          301 NSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK  364 (437)
T ss_dssp             SSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred             cCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence                     0000      001223  77789999999 77999999999999999998776443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.6e-24  Score=228.04  Aligned_cols=205  Identities=11%  Similarity=0.025  Sum_probs=169.4

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEE-EEEeCCCcEEEEECC--CCceeeEEeccCCccCCCCceEEEeecceecc
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYL-AVLLGNGSLEVWEVP--LLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSM  172 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~l-as~s~dg~V~iwd~~--~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~  172 (568)
                      .+|.+ .|++++|+|++          .+| ++|+.||.|+|||+.  ++.++..+..                      
T Consensus        99 ~~~~~-~v~~~~~s~d~----------~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~----------------------  145 (450)
T 2vdu_B           99 PPIYS-YIRNLRLTSDE----------SRLIACADSDKSLLVFDVDKTSKNVLKLRKR----------------------  145 (450)
T ss_dssp             -CCCC-CEEEEEECTTS----------SEEEEEEGGGTEEEEEEECSSSSSCEEEEEE----------------------
T ss_pred             CccCC-ceEEEEEcCCC----------CEEEEEECCCCeEEEEECcCCCCceeeeeec----------------------
Confidence            35666 56699999999          675 899999999999999  7777766521                      


Q ss_pred             cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC---CCCCCCCcE
Q 008363          173 LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA---ESDSDSANV  249 (568)
Q Consensus       173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~---~~~~~~~~~  249 (568)
                        ..|...| .+++|+  |++.+|++|+.||.|++|++......  ..+...+.+|...|.+++|+|+   +      .+
T Consensus       146 --~~~~~~v-~~~~~s--p~~~~l~~~~~~g~v~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~~------~~  212 (450)
T 2vdu_B          146 --FCFSKRP-NAISIA--EDDTTVIIADKFGDVYSIDINSIPEE--KFTQEPILGHVSMLTDVHLIKDSDGH------QF  212 (450)
T ss_dssp             --EECSSCE-EEEEEC--TTSSEEEEEETTSEEEEEETTSCCCS--SCCCCCSEECSSCEEEEEEEECTTSC------EE
T ss_pred             --ccCCCCc-eEEEEc--CCCCEEEEEeCCCcEEEEecCCcccc--cccceeeecccCceEEEEEcCCCCCC------cE
Confidence              2456777 999999  88999999999999999999866321  0034467789999999999999   7      89


Q ss_pred             EEEEcCCC-EEEEECCCCCcceee-eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccc
Q 008363          250 ILTAGHGG-LKFWDIRDPFRPLWD-IHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQG  327 (568)
Q Consensus       250 las~s~d~-v~lwD~~~~~~~~~~-~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~  327 (568)
                      |++++.|+ |++||++++ ..+.. +.+|...|++++|+ ++.+|++++.|+.|++||++.        |+++       
T Consensus       213 l~s~~~d~~i~vwd~~~~-~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~--------~~~~-------  275 (450)
T 2vdu_B          213 IITSDRDEHIKISHYPQC-FIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKT--------GKNL-------  275 (450)
T ss_dssp             EEEEETTSCEEEEEESCT-TCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTT--------CCEE-------
T ss_pred             EEEEcCCCcEEEEECCCC-ceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCC--------CcEe-------
Confidence            99999998 999999987 55554 66899999999999 999999999999999999954        4432       


Q ss_pred             eEEEe-------------------------cCCCCEEEEEEecCCCEEEEEe-CCCeEEEEEc
Q 008363          328 LHLVN-------------------------CSSFAIWSVQVSRLTGMVAYCS-ADGTVHRFQL  364 (568)
Q Consensus       328 l~~~~-------------------------~h~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~  364 (568)
                       ..+.                         .+...|.+++|+|++.+|++++ .|+.|++|++
T Consensus       276 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          276 -STFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             -EEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             -eeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence             3333                         2345799999999999999999 8999999999

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.93  E-value=4.4e-24  Score=252.37  Aligned_cols=290  Identities=17%  Similarity=0.246  Sum_probs=218.6

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC----------------c
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM----------------K  154 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~----------------~  154 (568)
                      .+..+.+|.+ .|.+++|+|++          .+||+|+.||.|+|||+.+++++..+.+|..                +
T Consensus       649 ~~~~~~~h~~-~v~~~~~s~~~----------~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  717 (1249)
T 3sfz_A          649 KLLDIKAHED-EVLCCAFSSDD----------SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLA  717 (1249)
T ss_dssp             EEEEECCCSS-CEEEEEECTTS----------SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEE
T ss_pred             EEEEeccCCC-CEEEEEEecCC----------CEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEE
Confidence            4555668988 55599999999          8999999999999999999999888877654                3


Q ss_pred             cCCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCC----------------
Q 008363          155 EGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSS----------------  216 (568)
Q Consensus       155 ~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~----------------  216 (568)
                      .++.++.+++|+..+  +...+.+|...| .+++|+  |++.+|++|+.||+|++||+.+....                
T Consensus       718 sg~~d~~v~vwd~~~~~~~~~~~~h~~~v-~~~~~s--p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~  794 (1249)
T 3sfz_A          718 TGSNDFFLKLWDLNQKECRNTMFGHTNSV-NHCRFS--PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPP  794 (1249)
T ss_dssp             EEETTSCEEEEETTSSSEEEEECCCSSCE-EEEEEC--SSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC-------
T ss_pred             EEeCCCeEEEEECCCcchhheecCCCCCE-EEEEEe--cCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCcc
Confidence            567788899999876  556677999999 999999  88999999999999999998754210                


Q ss_pred             --------------------------------CCCceeEE-eeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEE
Q 008363          217 --------------------------------IDSRPLLC-FSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWD  262 (568)
Q Consensus       217 --------------------------------~~~~~~~~-~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD  262 (568)
                                                      .....+.. ..+|...|.+++|+|++      .++++++.++ |++||
T Consensus       795 ~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~------~~l~~~~~dg~v~vwd  868 (1249)
T 3sfz_A          795 EDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD------HLAVIALSQYCVELWN  868 (1249)
T ss_dssp             -CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST------TEEEEECSSSCEEEEE
T ss_pred             ccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC------CEEEEEeCCCeEEEEE
Confidence                                            00011112 23788999999999999      8999999999 99999


Q ss_pred             CCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCC-C------------ccCccccceE
Q 008363          263 IRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGK-P------------FAGTKQQGLH  329 (568)
Q Consensus       263 ~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~-~------------~~~~~~~~l~  329 (568)
                      +.+. ..+..+.+|...|++++|+|++.+|++++.||.|++||+............ .            +.......+.
T Consensus       869 ~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  947 (1249)
T 3sfz_A          869 IDSR-LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQ  947 (1249)
T ss_dssp             TTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEE
T ss_pred             cCCC-ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceE
Confidence            9987 888889999999999999999999999999999999998642110000000 0            0000000001


Q ss_pred             --------EEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccCCC
Q 008363          330 --------LVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDN  401 (568)
Q Consensus       330 --------~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~  401 (568)
                              ....+...|.+++|+|++.++++++.||.|++|++.++........+. ..+.+..+++++..+++++....
T Consensus       948 ~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~-~~v~~l~~s~dg~~l~s~~~dg~ 1026 (1249)
T 3sfz_A          948 LIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK-KAVRHIQFTADGKTLISSSEDSV 1026 (1249)
T ss_dssp             EEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCS-SCCCCEEECSSSSCEEEECSSSB
T ss_pred             EEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCC-CceEEEEECCCCCEEEEEcCCCE
Confidence                    112245679999999999999999999999999998876655433222 23445567888888877654443


Q ss_pred             C
Q 008363          402 T  402 (568)
Q Consensus       402 ~  402 (568)
                      +
T Consensus      1027 i 1027 (1249)
T 3sfz_A         1027 I 1027 (1249)
T ss_dssp             E
T ss_pred             E
Confidence            3

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.93  E-value=2.6e-25  Score=229.87  Aligned_cols=242  Identities=11%  Similarity=0.086  Sum_probs=165.9

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccC------CCCCEE
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTS------PPHDYL  196 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~------~~g~~l  196 (568)
                      .+||+++.|++|+|||+.++++....                     ....+.||...| .+|+|+|.      .++++|
T Consensus       102 ~~las~~~d~~v~lw~~~~~~~~~~~---------------------~~~~~~gH~~~v-~~v~~~p~~~~~~~~d~~~l  159 (393)
T 4gq1_A          102 LFLACVCQDNTVRLIITKNETIITQH---------------------VLGGKSGHHNFV-NDIDIADVYSADNRLAEQVI  159 (393)
T ss_dssp             EEEEEEETTSCEEEEEEETTEEEEEE---------------------EECTTTSCSSCE-EEEEEEEEECTTCSEEEEEE
T ss_pred             CEEEEEeCCCcEEEEECCCCccceee---------------------eecccCCCCCce-EEEEEccccccccCCCCCEE
Confidence            68999999999999999987654321                     112338999999 99999952      267899


Q ss_pred             EEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcce-----
Q 008363          197 LAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPL-----  270 (568)
Q Consensus       197 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~-----  270 (568)
                      |+|+.|++|+|||+.+.      .++..+..|...|.+++|+|++     ..+|++++.|+ |++||++++....     
T Consensus       160 as~s~D~tv~~Wd~~~~------~~~~~~~~~~~~v~~v~~~p~~-----~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~  228 (393)
T 4gq1_A          160 ASVGDDCTLIIWRLTDE------GPILAGYPLSSPGISVQFRPSN-----PNQLIVGERNGNIRIFDWTLNLSAEENSQT  228 (393)
T ss_dssp             EEEETTSEEEEEEEETT------EEEEEEEECSSCEEEEEEETTE-----EEEEEEEETTSEEEEEETTCCC--------
T ss_pred             EEEECCCeEEEEECCCC------ceeeeecCCCCCcEEEEECCCC-----CceEEecCCCCEEEEEECCCCccccccccc
Confidence            99999999999999866      6777777899999999999987     26899999999 9999998763211     


Q ss_pred             -------------------eeeCCCCCCeEEEEEc-CCCCEEEEEeCCCcEEEEEccccccCCCCC---CCCccCccccc
Q 008363          271 -------------------WDIHPAPKFIYGLDWL-PDPGCVILSFDDGAMRIVSLLKAAYDVPAT---GKPFAGTKQQG  327 (568)
Q Consensus       271 -------------------~~~~~h~~~i~~l~~s-p~~~~l~s~~~dg~I~lwd~~~~~~~~~~~---g~~~~~~~~~~  327 (568)
                                         ....+|...+.++.|+ |++..|++++.|++|++||+..........   +..........
T Consensus       229 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~  308 (393)
T 4gq1_A          229 ELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPN  308 (393)
T ss_dssp             --CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCS
T ss_pred             CCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccc
Confidence                               1123677888899987 799999999999999999996422110000   00000000001


Q ss_pred             eEEEecCCCCEEEEEEecC--CCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccC
Q 008363          328 LHLVNCSSFAIWSVQVSRL--TGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPL  399 (568)
Q Consensus       328 l~~~~~h~~~V~~l~~sp~--~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~  399 (568)
                      ......+...+ ...|+|.  +.++++|+.||.|++||+.++........+.. .+.+.+++++|..|++.+..
T Consensus       309 ~~~~~~~~~~~-~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~-~V~svafspdG~~LA~as~~  380 (393)
T 4gq1_A          309 VQGISLFPSLL-GACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM-PIVDFCWHQDGSHLAIATEG  380 (393)
T ss_dssp             EEEECSSCCSS-CCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS-CEEEEEECTTSSEEEEEESS
T ss_pred             cccccccCcce-eEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC-cEEEEEEcCCCCEEEEEeCC
Confidence            11222222222 2334442  34677888999999999988765443332222 35567899999999887643

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.93  E-value=1e-23  Score=209.90  Aligned_cols=246  Identities=15%  Similarity=0.215  Sum_probs=188.0

Q ss_pred             eEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccce
Q 008363          104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPL  183 (568)
Q Consensus       104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~  183 (568)
                      ..|+||+++           +||+|. |++|+|||+.+++++..+..                        .+|...| +
T Consensus        29 ~~l~WS~~~-----------~lAvg~-D~tV~iWd~~tg~~~~~~~~------------------------~~~~~~V-~   71 (318)
T 4ggc_A           29 NLVDWSSGN-----------VLAVAL-DNSVYLWSASSGDILQLLQM------------------------EQPGEYI-S   71 (318)
T ss_dssp             BCEEECTTS-----------EEEEEE-TTEEEEEETTTCCEEEEEEC------------------------CSTTCCE-E
T ss_pred             eEEEECCCC-----------EEEEEe-CCEEEEEECCCCCEEEEEEe------------------------cCCCCeE-E
Confidence            368999875           788775 89999999999988876622                        5788889 9


Q ss_pred             EEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEE
Q 008363          184 TMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWD  262 (568)
Q Consensus       184 ~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD  262 (568)
                      +++|+  |++++|++|+.||+|++||+.++      +++..+.+|...+.++.+.  +      .++++++.++ +++|+
T Consensus        72 ~v~~~--~~~~~l~sgs~Dg~v~iw~~~~~------~~~~~~~~h~~~~~~~~~~--~------~~l~s~~~~~~~~~~~  135 (318)
T 4ggc_A           72 SVAWI--KEGNYLAVGTSSAEVQLWDVQQQ------KRLRNMTSHSARVGSLSWN--S------YILSSGSRSGHIHHHD  135 (318)
T ss_dssp             EEEEC--TTSSEEEEEETTSEEEEEETTTT------EEEEEEECCSSCEEEEEEE--T------TEEEEEETTSEEEEEE
T ss_pred             EEEEC--CCCCEEEEEECCCcEEEeecCCc------eeEEEecCccceEEEeecC--C------CEEEEEecCCceEeee
Confidence            99999  88999999999999999999977      8899999999998876654  4      6899999999 99999


Q ss_pred             CCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCC-------------------CCCCCc---
Q 008363          263 IRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVP-------------------ATGKPF---  320 (568)
Q Consensus       263 ~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~-------------------~~g~~~---  320 (568)
                      .......+..+.+|...+..+.|++++++|++++.|+.|++||++.......                   ..+..+   
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  215 (318)
T 4ggc_A          136 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG  215 (318)
T ss_dssp             TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEE
T ss_pred             cCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEE
Confidence            9988777788889999999999999999999999999999999975321100                   000000   


Q ss_pred             cC----------ccccceEEEecCCCCEEEEEEecCCCEEEEEe--CCCeEEEEEcCCCeeeccCCCCCcceeeeecccC
Q 008363          321 AG----------TKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCS--ADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTE  388 (568)
Q Consensus       321 ~~----------~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s--~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~  388 (568)
                      .+          ...........+...+..+.|+|.+..+++++  .|+.|++||+.++........+. ..+.+.++++
T Consensus       216 ~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~-~~V~~l~~sp  294 (318)
T 4ggc_A          216 GGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT-SRVLSLTMSP  294 (318)
T ss_dssp             ECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS-SCEEEEEECT
T ss_pred             ecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC-CCEEEEEEcC
Confidence            00          00001112234556788888999887777655  78999999998887766544433 3455667888


Q ss_pred             CCCceEEcccCCCCC
Q 008363          389 DESAITVNTPLDNTP  403 (568)
Q Consensus       389 ~~~~i~~~~~~~~~~  403 (568)
                      ++..|+.++....+.
T Consensus       295 dg~~l~S~s~D~~v~  309 (318)
T 4ggc_A          295 DGATVASAAADETLR  309 (318)
T ss_dssp             TSSCEEEEETTTEEE
T ss_pred             CCCEEEEEecCCeEE
Confidence            888888776655543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.93  E-value=2e-24  Score=235.39  Aligned_cols=236  Identities=17%  Similarity=0.143  Sum_probs=191.7

Q ss_pred             ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC----ceeeEEeccCCccCCCCceEEEeecceecc
Q 008363           97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL----RTMKAIYLSSMKEGTDPRFVKLEPVFRCSM  172 (568)
Q Consensus        97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~----~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~  172 (568)
                      .|.+ .+.+++|+|++          .+||+++ ++.|+||++.++    +....+                        
T Consensus        16 ~~~~-~v~~~~~spdg----------~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~------------------------   59 (615)
T 1pgu_A           16 TQRN-FTTHLSYDPTT----------NAIAYPC-GKSAFVRCLDDGDSKVPPVVQF------------------------   59 (615)
T ss_dssp             CCTT-CCCCCEEETTT----------TEEEEEE-TTEEEEEECCSSCCSSCSEEEE------------------------
T ss_pred             CccC-ceeEEEECCCC----------CEEEEec-CCeEEEEECCCCCCccccceEE------------------------
Confidence            5666 44599999999          7999988 789999999987    666665                        


Q ss_pred             cccCCcCc-cceEEEEccCC--CCCEEEEEeCCCeEEEEEccCCCCC--CCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363          173 LKCGGTQS-IPLTMEWSTSP--PHDYLLAGCHDGTVALWKFVASDSS--IDSRPLLCFSADTLPIRAVSWAPAESDSDSA  247 (568)
Q Consensus       173 ~~~~h~~~-V~~~v~~s~~~--~g~~l~sgs~Dg~I~iwd~~~~~~~--~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~  247 (568)
                        .+|... | ++++|+  |  ++.+|++|+.||+|+|||+.++...  .....+..+..|...|.+++|+|++      
T Consensus        60 --~~h~~~~v-~~~~~s--p~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------  128 (615)
T 1pgu_A           60 --TGHGSSVV-TTVKFS--PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG------  128 (615)
T ss_dssp             --CTTTTSCE-EEEEEC--SSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS------
T ss_pred             --ecCCCceE-EEEEEC--cCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCC------
Confidence              789999 9 999999  7  8999999999999999999632000  0015677888999999999999999      


Q ss_pred             cEEEEEcCC----C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEccccccCCCCCCCCcc
Q 008363          248 NVILTAGHG----G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPG-CVILSFDDGAMRIVSLLKAAYDVPATGKPFA  321 (568)
Q Consensus       248 ~~las~s~d----~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~-~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~  321 (568)
                      .+|++++.+    + |++||.  . ..+..+.+|...|++++|+|++. .|++++.|+.|++||++.        +    
T Consensus       129 ~~l~~~~~~~~~~~~v~~~d~--~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~--------~----  193 (615)
T 1pgu_A          129 RRLCVVGEGRDNFGVFISWDS--G-NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP--------F----  193 (615)
T ss_dssp             SEEEEEECCSSCSEEEEETTT--C-CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT--------B----
T ss_pred             CEEEEeccCCCCccEEEEEEC--C-CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC--------c----
Confidence            899999887    6 888883  3 67788889999999999999998 799999999999999843        3    


Q ss_pred             CccccceEEEecCCC---CEEEEEEecC-CCEEEEEeCCCeEEEEEcCCCeeeccCCC---CCcceeeeecccCCCCceE
Q 008363          322 GTKQQGLHLVNCSSF---AIWSVQVSRL-TGMVAYCSADGTVHRFQLTAKAVEKDHSR---NRPMHFLCGSVTEDESAIT  394 (568)
Q Consensus       322 ~~~~~~l~~~~~h~~---~V~~l~~sp~-~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~---~~~~~~~~~s~~~~~~~i~  394 (568)
                          +.+..+.+|..   .|++++|+|+ +.+|++++.||.|++||+.++........   .....+.+..++ ++..+.
T Consensus       194 ----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~  268 (615)
T 1pgu_A          194 ----KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFA  268 (615)
T ss_dssp             ----EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEE
T ss_pred             ----ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEE
Confidence                33468888999   9999999999 99999999999999999998876665422   222334455666 777776


Q ss_pred             EcccC
Q 008363          395 VNTPL  399 (568)
Q Consensus       395 ~~~~~  399 (568)
                      ++...
T Consensus       269 ~~~~d  273 (615)
T 1pgu_A          269 TVGAD  273 (615)
T ss_dssp             EEETT
T ss_pred             EEcCC
Confidence            65443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.93  E-value=3.8e-24  Score=217.93  Aligned_cols=209  Identities=11%  Similarity=0.077  Sum_probs=155.3

Q ss_pred             EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363           94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML  173 (568)
Q Consensus        94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~  173 (568)
                      ....|.+ .|++++|+|++          .+||+|+.+| ++||++.++......                         
T Consensus        14 ~~~~h~~-~V~~v~fs~dg----------~~la~g~~~~-~~iw~~~~~~~~~~~-------------------------   56 (355)
T 3vu4_A           14 PENHVSN-PVTDYEFNQDQ----------SCLILSTLKS-FEIYNVHPVAHIMSQ-------------------------   56 (355)
T ss_dssp             -----CC-CCCEEEECTTS----------SEEEEECSSE-EEEEEETTEEEEEEE-------------------------
T ss_pred             ccccCCC-ceEEEEECCCC----------CEEEEEcCCE-EEEEecCCcceeeee-------------------------
Confidence            3467877 55599999999          7999988775 789999876544332                         


Q ss_pred             ccCCcCccceEEEEccCCCCCEE-EEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCC----C-----
Q 008363          174 KCGGTQSIPLTMEWSTSPPHDYL-LAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAES----D-----  243 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g~~l-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~----~-----  243 (568)
                       .  ...+ ..++|.  ++++.+ ++|+.|++|+|||+.++      +++..+. |...|.+++|+++.-    +     
T Consensus        57 -~--~~~~-~~~~~~--~~~~~~~~~~~~d~~v~iWd~~~~------~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i  123 (355)
T 3vu4_A           57 -E--MRHL-SKVRML--HRTNYVAFVTGVKEVVHIWDDVKK------QDVSRIK-VDAPVKDLFLSREFIVVSYGDVISV  123 (355)
T ss_dssp             -E--CSCC-CEEEEC--TTSSEEEEECSSTTEEEEEETTTT------EEEEEEE-CSSCEEEEEECSSEEEEEETTEEEE
T ss_pred             -e--cCCe-EEEEEc--CCCCEEEEEECCccEEEEEECCCC------cEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEE
Confidence             1  1134 667777  445555 67788899999999876      6777775 666888888887530    0     


Q ss_pred             --CCCC------------------cEEEE--EcCCC-EEEEECCCCC--------------cc-eeeeCCCCCCeEEEEE
Q 008363          244 --SDSA------------------NVILT--AGHGG-LKFWDIRDPF--------------RP-LWDIHPAPKFIYGLDW  285 (568)
Q Consensus       244 --~~~~------------------~~las--~s~d~-v~lwD~~~~~--------------~~-~~~~~~h~~~i~~l~~  285 (568)
                        -...                  .+++.  |+.++ |++||+.+..              .+ +..+.+|.+.|++++|
T Consensus       124 ~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~  203 (355)
T 3vu4_A          124 FKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRL  203 (355)
T ss_dssp             EESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEE
T ss_pred             EECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEE
Confidence              0000                  23444  46677 9999998752              12 6788899999999999


Q ss_pred             cCCCCEEEEEeCCCc-EEEEEccccccCCCCCCCCccCccccceEEEe-c-CCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 008363          286 LPDPGCVILSFDDGA-MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN-C-SSFAIWSVQVSRLTGMVAYCSADGTVHRF  362 (568)
Q Consensus       286 sp~~~~l~s~~~dg~-I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~-~-h~~~V~~l~~sp~~~~l~s~s~Dg~v~iw  362 (568)
                      +|++++|++++.|++ |+|||+++        +++        +..+. + |...|++++|+|++.+|++++.|++|++|
T Consensus       204 s~~g~~l~s~s~d~~~v~iwd~~~--------~~~--------~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw  267 (355)
T 3vu4_A          204 NRKSDMVATCSQDGTIIRVFKTED--------GVL--------VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVF  267 (355)
T ss_dssp             CTTSSEEEEEETTCSEEEEEETTT--------CCE--------EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEE
T ss_pred             CCCCCEEEEEeCCCCEEEEEECCC--------CcE--------EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEE
Confidence            999999999999998 99999953        533        46777 5 99999999999999999999999999999


Q ss_pred             EcCCCe
Q 008363          363 QLTAKA  368 (568)
Q Consensus       363 d~~~~~  368 (568)
                      |+....
T Consensus       268 ~~~~~~  273 (355)
T 3vu4_A          268 EIFNDQ  273 (355)
T ss_dssp             ESSCCS
T ss_pred             EccCCC
Confidence            997653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=8.6e-25  Score=244.86  Aligned_cols=214  Identities=19%  Similarity=0.318  Sum_probs=178.3

Q ss_pred             EEEeeccCCceeeEEEEccC--CCCcccccCcccEEEEEeCCCcEEEEECCCCc--eeeEEeccCCccCCCCceEEEeec
Q 008363           92 VVLCLAHNGKVAWDVKWKPY--NAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR--TMKAIYLSSMKEGTDPRFVKLEPV  167 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~--~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~--~~~~l~~~~~~~~~~~~~v~~~~~  167 (568)
                      +..+.+|.+ .|++++|+|+  +          .+|++|+.||.|+|||+.++.  .+..+                   
T Consensus        46 ~~~l~~h~~-~V~~l~~s~~~~~----------~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-------------------   95 (753)
T 3jro_A           46 IDTLTGHEG-PVWRVDWAHPKFG----------TILASCSYDGKVLIWKEENGRWSQIAVH-------------------   95 (753)
T ss_dssp             EEEECCCSS-CEEEEEECCTTSC----------SEEEEEETTSCEEEEEEETTEEEEEEEE-------------------
T ss_pred             ceeccCCcC-ceEEEEecCCCCC----------CEEEEEeCCCeEEEEECCCCcccccccc-------------------
Confidence            445568988 5569999988  6          799999999999999999865  33333                   


Q ss_pred             ceecccccCCcCccceEEEEccCCC--CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC-----
Q 008363          168 FRCSMLKCGGTQSIPLTMEWSTSPP--HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA-----  240 (568)
Q Consensus       168 ~~~~~~~~~h~~~V~~~v~~s~~~~--g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~-----  240 (568)
                             .+|...| ++++|+  |+  +.+|++|+.||+|++||+.....    .....+.+|...|.+++|+|.     
T Consensus        96 -------~~h~~~V-~~v~~s--p~~~~~~l~sgs~dg~I~vwdl~~~~~----~~~~~~~~~~~~v~~l~~~p~~~~~~  161 (753)
T 3jro_A           96 -------AVHSASV-NSVQWA--PHEYGPLLLVASSDGKVSVVEFKENGT----TSPIIIDAHAIGVNSASWAPATIEED  161 (753)
T ss_dssp             -------CCCSSCE-EEEEEC--CGGGCSEEEEEETTSEEEEEECCSSSC----CCCEEEECCSSCEEEEEECCCC----
T ss_pred             -------cCCCCCe-EEEEEC--CCCCCCEEEEEeCCCcEEEEEeecCCC----cceeEeecCCCceEEEEecCcccccc
Confidence                   7788999 999999  66  89999999999999999987632    455677899999999999994     


Q ss_pred             --------CCCCCCCcEEEEEcCCC-EEEEECCCCC---cceeeeCCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEE
Q 008363          241 --------ESDSDSANVILTAGHGG-LKFWDIRDPF---RPLWDIHPAPKFIYGLDWLPD---PGCVILSFDDGAMRIVS  305 (568)
Q Consensus       241 --------~~~~~~~~~las~s~d~-v~lwD~~~~~---~~~~~~~~h~~~i~~l~~sp~---~~~l~s~~~dg~I~lwd  305 (568)
                              +      .+|++|+.|+ |++||+++..   .+...+.+|...|++++|+|+   +.+|++++.||.|++||
T Consensus       162 ~~~~~~~d~------~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd  235 (753)
T 3jro_A          162 GEHNGTKES------RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  235 (753)
T ss_dssp             -----CGGG------CCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred             cccccCCCC------CEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence                    5      7999999999 9999998764   344677899999999999999   89999999999999999


Q ss_pred             ccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          306 LLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       306 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                      ++...      +...     ..+.....|...|++++|+|++.+|++++.||.|++|++.+
T Consensus       236 ~~~~~------~~~~-----~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          236 QDNEQ------GPWK-----KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             ESSSS------SCCB-----CCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             CCCCC------Ccce-----eEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            96522      1110     11223456889999999999999999999999999999974

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=5.3e-24  Score=224.01  Aligned_cols=226  Identities=9%  Similarity=-0.018  Sum_probs=169.8

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc---eeeEEeccCCc----------------c-CCCC-ce
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR---TMKAIYLSSMK----------------E-GTDP-RF  161 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~---~~~~l~~~~~~----------------~-~~~~-~~  161 (568)
                      +.+++|+|++          ++|+++ .++.|++||+.+++   .+..+..+...                . ...+ ..
T Consensus         7 ~~~v~~s~dg----------~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (450)
T 2vdu_B            7 LQNLLTSRDG----------SLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKK   75 (450)
T ss_dssp             CCEEEECSSS----------SEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------
T ss_pred             EEEEEecCCC----------CEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccc
Confidence            3488999999          766655 57899999999988   66665433210                0 0000 00


Q ss_pred             E----------EEeecceecccccCCcCccceEEEEccCCCCCEE-EEEeCCCeEEEEEcc--CCCCCCCCceeEEee--
Q 008363          162 V----------KLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYL-LAGCHDGTVALWKFV--ASDSSIDSRPLLCFS--  226 (568)
Q Consensus       162 v----------~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l-~sgs~Dg~I~iwd~~--~~~~~~~~~~~~~~~--  226 (568)
                      .          ..+..........+|...| ++++|+  |++.+| ++|+.||+|+|||+.  .+      .++..+.  
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s--~d~~~l~~~~~~dg~v~iwd~~~~~~------~~~~~~~~~  146 (450)
T 2vdu_B           76 LKSNKGDSIKRTAAKVPSPGLGAPPIYSYI-RNLRLT--SDESRLIACADSDKSLLVFDVDKTSK------NVLKLRKRF  146 (450)
T ss_dssp             ------------------------CCCCCE-EEEEEC--TTSSEEEEEEGGGTEEEEEEECSSSS------SCEEEEEEE
T ss_pred             cccCcCccccccCccccCCCCCCCccCCce-EEEEEc--CCCCEEEEEECCCCeEEEEECcCCCC------ceeeeeecc
Confidence            0          0000000011123677788 999999  889886 899999999999998  55      5566664  


Q ss_pred             CCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCc---ceeeeCCCCCCeEEEEEcCC---CCEEEEEeCCC
Q 008363          227 ADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFR---PLWDIHPAPKFIYGLDWLPD---PGCVILSFDDG  299 (568)
Q Consensus       227 ~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~---~~~~~~~h~~~i~~l~~sp~---~~~l~s~~~dg  299 (568)
                      .|...|.+++|+|++      .+|++++.++ |++||+.+...   +...+.+|...|++++|+|+   +++|++++.|+
T Consensus       147 ~~~~~v~~~~~sp~~------~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~  220 (450)
T 2vdu_B          147 CFSKRPNAISIAEDD------TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE  220 (450)
T ss_dssp             ECSSCEEEEEECTTS------SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTS
T ss_pred             cCCCCceEEEEcCCC------CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCC
Confidence            677899999999999      8999999999 99999987632   33366789999999999999   99999999999


Q ss_pred             cEEEEEccccccCCCCCCCCccCccccceEE-EecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          300 AMRIVSLLKAAYDVPATGKPFAGTKQQGLHL-VNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       300 ~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~-~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                      .|++||++.        ++.        +.. +.+|...|++++|+ ++.+|++++.|+.|++||+.++....
T Consensus       221 ~i~vwd~~~--------~~~--------~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~  276 (450)
T 2vdu_B          221 HIKISHYPQ--------CFI--------VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLS  276 (450)
T ss_dssp             CEEEEEESC--------TTC--------EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEE
T ss_pred             cEEEEECCC--------Cce--------eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEee
Confidence            999999953        433        234 56899999999999 99999999999999999999876543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.93  E-value=7.1e-24  Score=231.08  Aligned_cols=212  Identities=19%  Similarity=0.198  Sum_probs=181.9

Q ss_pred             eEEEeeccCCceeeEEEEcc--CCCCcccccCcccEEEEEeCCCcEEEEECCCC--------ceeeEEeccCCccCCCCc
Q 008363           91 RVVLCLAHNGKVAWDVKWKP--YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL--------RTMKAIYLSSMKEGTDPR  160 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp--~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~--------~~~~~l~~~~~~~~~~~~  160 (568)
                      .+..+.+|.+..|.+++|+|  ++          .+||+|+.||.|+|||+.++        ..+..+            
T Consensus        55 ~~~~~~~h~~~~v~~~~~sp~~~~----------~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~------------  112 (615)
T 1pgu_A           55 PVVQFTGHGSSVVTTVKFSPIKGS----------QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF------------  112 (615)
T ss_dssp             SEEEECTTTTSCEEEEEECSSTTC----------CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE------------
T ss_pred             cceEEecCCCceEEEEEECcCCCC----------CEEEEecCCCEEEEEeCCCCcccccccccccchh------------
Confidence            45556789985166999999  99          89999999999999999754        333332            


Q ss_pred             eEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC----CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEE
Q 008363          161 FVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD----GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVS  236 (568)
Q Consensus       161 ~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~  236 (568)
                                    .+|...| .+++|+  |++.+|++++.+    +.|.+||.  +      ..+..+.+|...|.+++
T Consensus       113 --------------~~~~~~v-~~~~~s--~~~~~l~~~~~~~~~~~~v~~~d~--~------~~~~~~~~~~~~v~~~~  167 (615)
T 1pgu_A          113 --------------QVLAGPI-SDISWD--FEGRRLCVVGEGRDNFGVFISWDS--G------NSLGEVSGHSQRINACH  167 (615)
T ss_dssp             --------------ECCSSCE-EEEEEC--TTSSEEEEEECCSSCSEEEEETTT--C------CEEEECCSCSSCEEEEE
T ss_pred             --------------hcccccE-EEEEEe--CCCCEEEEeccCCCCccEEEEEEC--C------CcceeeecCCccEEEEE
Confidence                          6788888 999999  889999999988    78999983  3      67888999999999999


Q ss_pred             EccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCC---CeEEEEEcCC-CCEEEEEeCCCcEEEEEcccccc
Q 008363          237 WAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPK---FIYGLDWLPD-PGCVILSFDDGAMRIVSLLKAAY  311 (568)
Q Consensus       237 ~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~---~i~~l~~sp~-~~~l~s~~~dg~I~lwd~~~~~~  311 (568)
                      |+|++     +.+|++++.|+ |++||+.+. ..+..+.+|..   .|++++|+|+ +++|++++.||.|++||++.   
T Consensus       168 ~~~~~-----~~~l~~~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~---  238 (615)
T 1pgu_A          168 LKQSR-----PMRSMTVGDDGSVVFYQGPPF-KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS---  238 (615)
T ss_dssp             ECSSS-----SCEEEEEETTTEEEEEETTTB-EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT---
T ss_pred             ECCCC-----CcEEEEEeCCCcEEEEeCCCc-ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCC---
Confidence            99998     23899999999 999999877 78888889999   9999999999 99999999999999999953   


Q ss_pred             CCCCCCCCccCccccceEEE-e---cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          312 DVPATGKPFAGTKQQGLHLV-N---CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       312 ~~~~~g~~~~~~~~~~l~~~-~---~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                           ++.        +..+ .   .|...|.+++|+ ++.+|++++.||.|++||+.++.....
T Consensus       239 -----~~~--------~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~  289 (615)
T 1pgu_A          239 -----GEF--------LKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQK  289 (615)
T ss_dssp             -----CCE--------EEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             -----CCE--------eEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence                 433        3566 5   899999999999 999999999999999999998766544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.92  E-value=2e-23  Score=235.69  Aligned_cols=233  Identities=15%  Similarity=0.164  Sum_probs=196.0

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccC
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEG  156 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~  156 (568)
                      .+..+.+|.+ .|.+++|+|++          .+|++|+.||.|+|||+.+++.+..+.+|..              +.+
T Consensus        47 ~~~~~~~~~~-~v~~~~~s~~~----------~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  115 (814)
T 3mkq_A           47 EVRSIQVTET-PVRAGKFIARK----------NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSG  115 (814)
T ss_dssp             EEEEEECCSS-CEEEEEEEGGG----------TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEE
T ss_pred             eEEEEecCCC-cEEEEEEeCCC----------CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEE
Confidence            3444567888 55599999999          7999999999999999999998888877655              456


Q ss_pred             CCCceEEEeecce---ecccccCCcCccceEEEEccCC-CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC-CCC
Q 008363          157 TDPRFVKLEPVFR---CSMLKCGGTQSIPLTMEWSTSP-PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD-TLP  231 (568)
Q Consensus       157 ~~~~~v~~~~~~~---~~~~~~~h~~~V~~~v~~s~~~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-~~~  231 (568)
                      +.++.+++|+...   +.....+|...| .+++|+  | ++..|++|+.||+|++||+...      .....+..| ...
T Consensus       116 ~~dg~i~vw~~~~~~~~~~~~~~~~~~v-~~~~~~--p~~~~~l~~~~~dg~v~vwd~~~~------~~~~~~~~~~~~~  186 (814)
T 3mkq_A          116 SDDLTVKLWNWENNWALEQTFEGHEHFV-MCVAFN--PKDPSTFASGCLDRTVKVWSLGQS------TPNFTLTTGQERG  186 (814)
T ss_dssp             ETTSEEEEEEGGGTSEEEEEEECCSSCE-EEEEEE--TTEEEEEEEEETTSEEEEEETTCS------SCSEEEECCCTTC
T ss_pred             cCCCEEEEEECCCCceEEEEEcCCCCcE-EEEEEE--cCCCCEEEEEeCCCeEEEEECCCC------cceeEEecCCCCC
Confidence            7888999999764   445667899999 999999  6 6789999999999999999866      455555544 488


Q ss_pred             eeEEEEcc--CCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363          232 IRAVSWAP--AESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK  308 (568)
Q Consensus       232 V~~v~~~p--~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~  308 (568)
                      |.+++|+|  ++      .+|++++.|+ |++||++++ .++..+.+|...|++++|+|++.+|++++.||.|++||+..
T Consensus       187 v~~~~~~~~~~~------~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~  259 (814)
T 3mkq_A          187 VNYVDYYPLPDK------PYMITASDDLTIKIWDYQTK-SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (814)
T ss_dssp             CCEEEECCSTTC------CEEEEECTTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             EEEEEEEECCCC------CEEEEEeCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            99999999  77      8999999999 999999987 77888889999999999999999999999999999999943


Q ss_pred             cccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCC-EEEEEeCCCeEEEEEcCC
Q 008363          309 AAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG-MVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       309 ~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~-~l~s~s~Dg~v~iwd~~~  366 (568)
                              ++.        +..+..|...|++++|+|++. .+++++.|+.+.+|++..
T Consensus       260 --------~~~--------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (814)
T 3mkq_A          260 --------YKV--------EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN  302 (814)
T ss_dssp             --------CSE--------EEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred             --------CcE--------EEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence                    433        468888999999999999985 335555577889998754

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.1e-23  Score=220.60  Aligned_cols=241  Identities=12%  Similarity=0.139  Sum_probs=177.0

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC  175 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~  175 (568)
                      ..|.. .|++++|+|+|          .+||+++.||.|+|||...  ++..+                          .
T Consensus        82 ~~~~~-~V~~vawSPdG----------~~LAs~s~dg~V~iwd~~~--~l~~l--------------------------~  122 (588)
T 2j04_A           82 SQPVC-YPRVCKPSPID----------DWMAVLSNNGNVSVFKDNK--MLTNL--------------------------D  122 (588)
T ss_dssp             TSCSC-CEEEEEECSSS----------SCEEEEETTSCEEEEETTE--EEEEC--------------------------C
T ss_pred             cCCCC-cEEEEEECCCC----------CEEEEEeCCCcEEEEeCCc--eeeec--------------------------c
Confidence            35644 67799999999          8999999999999999654  44333                          3


Q ss_pred             CCcC-----ccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCC-CCceeEEe----eCCCCCeeEEEEccCCCCCC
Q 008363          176 GGTQ-----SIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSI-DSRPLLCF----SADTLPIRAVSWAPAESDSD  245 (568)
Q Consensus       176 ~h~~-----~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~~----~~h~~~V~~v~~~p~~~~~~  245 (568)
                       |..     .+ .+++|+  |+|++||+|+.||+|+|||+..+.... ....+.++    .+|...|.+++|+|+     
T Consensus       123 -~~~~~~~~sv-~svafS--PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd-----  193 (588)
T 2j04_A          123 -SKGNLSSRTY-HCFEWN--PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED-----  193 (588)
T ss_dssp             -CSSCSTTTCE-EEEEEC--SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT-----
T ss_pred             -CCCccccccE-EEEEEc--CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC-----
Confidence             333     47 899999  899999999999999999998762100 00135665    678889999999998     


Q ss_pred             CCcEEEEEcCCC-EEEEECCCCCc--ceeee-CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCcc
Q 008363          246 SANVILTAGHGG-LKFWDIRDPFR--PLWDI-HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFA  321 (568)
Q Consensus       246 ~~~~las~s~d~-v~lwD~~~~~~--~~~~~-~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~  321 (568)
                        . +++++.|+ |++||+.....  ....+ .+|...|.+++|+  +..|++++ +++|++||+..        ++   
T Consensus       194 --g-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~--------~~---  256 (588)
T 2j04_A          194 --V-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKN--------YS---  256 (588)
T ss_dssp             --E-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTT--------TE---
T ss_pred             --c-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCC--------Ce---
Confidence              4 67777787 99999987642  23455 4788999999999  68888887 69999999943        22   


Q ss_pred             CccccceEEEe-cCCCCEEEEEE--ecCCCEEEEEeCCCeEEEEEcCCCeeeccC---------------C---C---CC
Q 008363          322 GTKQQGLHLVN-CSSFAIWSVQV--SRLTGMVAYCSADGTVHRFQLTAKAVEKDH---------------S---R---NR  377 (568)
Q Consensus       322 ~~~~~~l~~~~-~h~~~V~~l~~--sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~---------------~---~---~~  377 (568)
                            +..+. +|...|+.++|  +|++..|++++.||+ ++|.+..-.+..+.               .   .   ..
T Consensus       257 ------~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~  329 (588)
T 2j04_A          257 ------ISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET  329 (588)
T ss_dssp             ------EEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC
T ss_pred             ------EEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc
Confidence                  22333 89999999999  999999999999999 99997422111000               0   0   00


Q ss_pred             cceeeeecccCCCCceEEcccCCCCCccccc
Q 008363          378 PMHFLCGSVTEDESAITVNTPLDNTPVPLKK  408 (568)
Q Consensus       378 ~~~~~~~s~~~~~~~i~~~~~~~~~~~~~k~  408 (568)
                      ...+.+.+++++|..+++....+...+.++.
T Consensus       330 ~~~I~~va~SPdG~~lA~~~~i~~~~~~y~i  360 (588)
T 2j04_A          330 TLVIHGISLSPDGYSIAIVYDMERVAFKYKI  360 (588)
T ss_dssp             EEEEEEEEECTTSSEEEEEEEEECSSCCCCC
T ss_pred             ceEEEEEEECCCCCEEEEEEeccCceeEEee
Confidence            1124567899999998886655444344433

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.92  E-value=4.7e-24  Score=216.45  Aligned_cols=209  Identities=14%  Similarity=0.226  Sum_probs=166.2

Q ss_pred             EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecc
Q 008363           93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSM  172 (568)
Q Consensus        93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~  172 (568)
                      ....+|.+ .|.+++|+|++          .+|++++.||.|+|||+.+++.+..                         
T Consensus        80 ~~~~~h~~-~v~~~~~~~~~----------~~l~s~~~dg~v~iwd~~~~~~~~~-------------------------  123 (368)
T 3mmy_A           80 KAQQMHTG-PVLDVCWSDDG----------SKVFTASCDKTAKMWDLSSNQAIQI-------------------------  123 (368)
T ss_dssp             EEEEECSS-CEEEEEECTTS----------SEEEEEETTSEEEEEETTTTEEEEE-------------------------
T ss_pred             EEeccccC-CEEEEEECcCC----------CEEEEEcCCCcEEEEEcCCCCceee-------------------------
Confidence            45667888 55599999999          7999999999999999999776643                         


Q ss_pred             cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCC-----------------------
Q 008363          173 LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADT-----------------------  229 (568)
Q Consensus       173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-----------------------  229 (568)
                        .+|...| .+++|++.+++.+|++|+.||.|++||+.+.      +++..+..|.                       
T Consensus       124 --~~~~~~v-~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  194 (368)
T 3mmy_A          124 --AQHDAPV-KTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS------NPMMVLQLPERCYCADVIYPMAVVATAERGLIV  194 (368)
T ss_dssp             --EECSSCE-EEEEEEECSSCEEEEEEETTSEEEEECSSCS------SCSEEEECSSCEEEEEEETTEEEEEEGGGCEEE
T ss_pred             --ccccCce-EEEEEEeCCCCCEEEEccCCCcEEEEECCCC------cEEEEEecCCCceEEEecCCeeEEEeCCCcEEE
Confidence              5688888 9999955589999999999999999999876      3334333322                       


Q ss_pred             ------------------CCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCC--cceeeeCCCCC----------
Q 008363          230 ------------------LPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPF--RPLWDIHPAPK----------  278 (568)
Q Consensus       230 ------------------~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~--~~~~~~~~h~~----------  278 (568)
                                        ..+.++.+.+..  ...+..+++++.|+ |++||++...  ..+..+..|..          
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (368)
T 3mmy_A          195 YQLENQPSEFRRIESPLKHQHRCVAIFKDK--QNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQD  272 (368)
T ss_dssp             EECSSSCEEEEECCCSCSSCEEEEEEEECT--TSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEE
T ss_pred             EEeccccchhhhccccccCCCceEEEcccC--CCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccccc
Confidence                              334455555443  11234499999999 9999999764  34566667765          


Q ss_pred             --CeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCC
Q 008363          279 --FIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD  356 (568)
Q Consensus       279 --~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D  356 (568)
                        .|++++|+|++++|++++.||.|++||++.        +        .++..+.+|...|++++|+|++.+|++++.|
T Consensus       273 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~--------~--------~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d  336 (368)
T 3mmy_A          273 IYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA--------R--------TKLKTSEQLDQPISACCFNHNGNIFAYASSY  336 (368)
T ss_dssp             ECCEEEEEECTTTCCEEEEETTSCEEEEETTT--------T--------EEEEECCCCSSCEEEEEECTTSSCEEEEECC
T ss_pred             ccceEEEEEecCCCEEEEEccCCeEEEEECCC--------C--------cEEEEecCCCCCceEEEECCCCCeEEEEecc
Confidence              799999999999999999999999999953        4        3346888999999999999999999999999


Q ss_pred             CeEEEEEc
Q 008363          357 GTVHRFQL  364 (568)
Q Consensus       357 g~v~iwd~  364 (568)
                      +..+.|++
T Consensus       337 ~~~~~~~~  344 (368)
T 3mmy_A          337 DWSKGHEF  344 (368)
T ss_dssp             CSTTCGGG
T ss_pred             cccccccc
Confidence            86666554

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.92  E-value=6.9e-24  Score=219.13  Aligned_cols=206  Identities=12%  Similarity=0.134  Sum_probs=144.0

Q ss_pred             eeccCCceeeEEEEcc--------CCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEee
Q 008363           95 CLAHNGKVAWDVKWKP--------YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEP  166 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp--------~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~  166 (568)
                      +.+|.+ .|++|+|+|        ++          ++||+|+.|++|+|||+.++.++..+                  
T Consensus       132 ~~gH~~-~v~~v~~~p~~~~~~~~d~----------~~las~s~D~tv~~Wd~~~~~~~~~~------------------  182 (393)
T 4gq1_A          132 KSGHHN-FVNDIDIADVYSADNRLAE----------QVIASVGDDCTLIIWRLTDEGPILAG------------------  182 (393)
T ss_dssp             TTSCSS-CEEEEEEEEEECTTCSEEE----------EEEEEEETTSEEEEEEEETTEEEEEE------------------
T ss_pred             cCCCCC-ceEEEEEccccccccCCCC----------CEEEEEECCCeEEEEECCCCceeeee------------------
Confidence            457988 566999998        56          79999999999999999887766555                  


Q ss_pred             cceecccccCCcCccceEEEEccCCCC-CEEEEEeCCCeEEEEEccCCCCCCCC-------------------ceeEEee
Q 008363          167 VFRCSMLKCGGTQSIPLTMEWSTSPPH-DYLLAGCHDGTVALWKFVASDSSIDS-------------------RPLLCFS  226 (568)
Q Consensus       167 ~~~~~~~~~~h~~~V~~~v~~s~~~~g-~~l~sgs~Dg~I~iwd~~~~~~~~~~-------------------~~~~~~~  226 (568)
                              .+|...| .+++|+  |++ .+|++|+.||+|++||+.++......                   .......
T Consensus       183 --------~~~~~~v-~~v~~~--p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  251 (393)
T 4gq1_A          183 --------YPLSSPG-ISVQFR--PSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS  251 (393)
T ss_dssp             --------EECSSCE-EEEEEE--TTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred             --------cCCCCCc-EEEEEC--CCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence                    6677888 999999  665 48999999999999999876431110                   0111234


Q ss_pred             CCCCCeeEEEEc-cCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEE------------------Ec
Q 008363          227 ADTLPIRAVSWA-PAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLD------------------WL  286 (568)
Q Consensus       227 ~h~~~V~~v~~~-p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~------------------~s  286 (568)
                      +|...|.++.|. +++      ..|++++.|+ +++||+... .....+..|...+..+.                  |+
T Consensus       252 ~~~~~v~~v~~~~~dg------~~l~s~s~d~~i~vwd~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (393)
T 4gq1_A          252 GIASSLANVRWIGSDG------SGILAMCKSGAWLRWNLFAN-NDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH  324 (393)
T ss_dssp             CCSSSCSEEEEETTTT------CEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred             cccccceeeeeecCCC------CEEEEEeCCCCEEEEECccC-CCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence            688889999997 677      8999999999 999999876 44444444444333333                  33


Q ss_pred             C--CCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          287 P--DPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       287 p--~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                      |  ++.++++|+.||+|+|||+..        |+..        ..+.+|..+|++|+|+|+|++||+++.|| +.+|.+
T Consensus       325 ~~~~~~~~~sgs~Dg~V~lwd~~~--------~~~~--------~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          325 PRYMDYFATAHSQHGLIQLINTYE--------KDSN--------SIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             SSCTTEEEEEETTTTEEEEEETTC--------TTCC--------EEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             cCCCCEEEEEECCCCEEEEEECCC--------CcEE--------EEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            3  334566677899999999943        5443        56778999999999999999999998665 666655

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.91  E-value=1.3e-22  Score=204.24  Aligned_cols=226  Identities=12%  Similarity=0.075  Sum_probs=181.4

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCccc-EEEEEeCCCcEEEEEC-CCCceeeEEec--cCC-------------c
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLG-YLAVLLGNGSLEVWEV-PLLRTMKAIYL--SSM-------------K  154 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~-~las~s~dg~V~iwd~-~~~~~~~~l~~--~~~-------------~  154 (568)
                      +....+|.. .+.+++|+|++          . +|++|+.||.|++||+ .+++. ..+..  |..             +
T Consensus        49 ~~~~~~~~~-~v~~~~~~~~~----------~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~  116 (342)
T 1yfq_A           49 LLQSLRYKH-PLLCCNFIDNT----------DLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYGDDKLI  116 (342)
T ss_dssp             EEEEEECSS-CEEEEEEEESS----------SEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEE
T ss_pred             ceeeeecCC-ceEEEEECCCC----------CcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCCCCEEE
Confidence            444568888 55599999998          8 9999999999999999 77543 34444  332             4


Q ss_pred             cCCCCceEEEeecce---------e--cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccC-CCCCCCCcee
Q 008363          155 EGTDPRFVKLEPVFR---------C--SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVA-SDSSIDSRPL  222 (568)
Q Consensus       155 ~~~~~~~v~~~~~~~---------~--~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~-~~~~~~~~~~  222 (568)
                      .++.++.+++|+...         .  .... .|...| .+++|+  +++  |++|+.||.|++||+.. ...    ...
T Consensus       117 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v-~~~~~~--~~~--l~~~~~d~~i~i~d~~~~~~~----~~~  186 (342)
T 1yfq_A          117 AASWDGLIEVIDPRNYGDGVIAVKNLNSNNT-KVKNKI-FTMDTN--SSR--LIVGMNNSQVQWFRLPLCEDD----NGT  186 (342)
T ss_dssp             EEETTSEEEEECHHHHTTBCEEEEESCSSSS-SSCCCE-EEEEEC--SSE--EEEEESTTEEEEEESSCCTTC----CCE
T ss_pred             EEcCCCeEEEEcccccccccccccCCeeeEE-eeCCce-EEEEec--CCc--EEEEeCCCeEEEEECCccccc----cce
Confidence            567888999998764         2  2222 388888 999999  554  99999999999999987 421    234


Q ss_pred             EEeeCCCCCeeEEEEcc-CCCCCCCCcEEEEEcCCC-EEEEECCCC-----CcceeeeCCCCC---------CeEEEEEc
Q 008363          223 LCFSADTLPIRAVSWAP-AESDSDSANVILTAGHGG-LKFWDIRDP-----FRPLWDIHPAPK---------FIYGLDWL  286 (568)
Q Consensus       223 ~~~~~h~~~V~~v~~~p-~~~~~~~~~~las~s~d~-v~lwD~~~~-----~~~~~~~~~h~~---------~i~~l~~s  286 (568)
                      .....|...|.+++|+| ++      .+|++++.|+ |++||+...     ......+..|..         .|++++|+
T Consensus       187 ~~~~~~~~~i~~i~~~~~~~------~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  260 (342)
T 1yfq_A          187 IEESGLKYQIRDVALLPKEQ------EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS  260 (342)
T ss_dssp             EEECSCSSCEEEEEECSGGG------CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC
T ss_pred             eeecCCCCceeEEEECCCCC------CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEc
Confidence            45567889999999999 88      8999999999 999999876     366677777755         89999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecC-CCCEEEEEEecCCCEEEEEeCCCe-EEEEE
Q 008363          287 PDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS-SFAIWSVQVSRLTGMVAYCSADGT-VHRFQ  363 (568)
Q Consensus       287 p~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h-~~~V~~l~~sp~~~~l~s~s~Dg~-v~iwd  363 (568)
                      |++++|++++.||.|++||++.        ++        .+..+.+| ...|++++  |++.+|++++.||+ .+.|.
T Consensus       261 ~~~~~l~~~~~dg~i~vwd~~~--------~~--------~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          261 PRHKFLYTAGSDGIISCWNLQT--------RK--------KIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             TTTCCEEEEETTSCEEEEETTT--------TE--------EEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             CCCCEEEEecCCceEEEEcCcc--------Hh--------HhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence            9999999999999999999953        43        34678888 99999999  99999999999998 44443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.91  E-value=2.2e-23  Score=218.17  Aligned_cols=218  Identities=14%  Similarity=0.135  Sum_probs=161.0

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC-CceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML  173 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~  173 (568)
                      ..+|.. .|++++|+|++          .+|++| .||.|+|||+.. +..+..+..              .     ...
T Consensus       173 ~~~h~~-~v~~~~~~~~~----------~~l~s~-~d~~i~iwd~~~~~~~~~~~~~--------------~-----~~~  221 (447)
T 3dw8_B          173 ANAHTY-HINSISINSDY----------ETYLSA-DDLRINLWHLEITDRSFNIVDI--------------K-----PAN  221 (447)
T ss_dssp             CSCCSS-CCCEEEECTTS----------SEEEEE-CSSEEEEEETTEEEEEEEEEEC--------------C-----CSS
T ss_pred             ccCCCc-ceEEEEEcCCC----------CEEEEe-CCCeEEEEECCCCCceeeeeec--------------c-----ccc
Confidence            357888 55599999999          799998 899999999985 333332200              0     012


Q ss_pred             ccCCcCccceEEEEccCCCC-CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCC------------CeeEEEEccC
Q 008363          174 KCGGTQSIPLTMEWSTSPPH-DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTL------------PIRAVSWAPA  240 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~------------~V~~v~~~p~  240 (568)
                      ..+|...| ++++|+  |++ .+|++|+.||+|++||+++...  ....+..+.+|..            .|.+++|+|+
T Consensus       222 ~~~~~~~v-~~~~~~--p~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  296 (447)
T 3dw8_B          222 MEELTEVI-TAAEFH--PNSCNTFVYSSSKGTIRLCDMRASAL--CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS  296 (447)
T ss_dssp             GGGCCCCE-EEEEEC--SSCTTEEEEEETTSCEEEEETTTCSS--SCTTCEEECCC-----CCHHHHHTTCEEEEEECTT
T ss_pred             ccccCcce-EEEEEC--CCCCcEEEEEeCCCeEEEEECcCCcc--ccceeeEeccCCCccccccccccCceEEEEEECCC
Confidence            26889999 999999  777 8999999999999999987621  0112677888876            8999999999


Q ss_pred             CCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCC---------------eEEEEEcCCCCEEEEEeCCCcEEEE
Q 008363          241 ESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKF---------------IYGLDWLPDPGCVILSFDDGAMRIV  304 (568)
Q Consensus       241 ~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~---------------i~~l~~sp~~~~l~s~~~dg~I~lw  304 (568)
                      +      .+|++++. + |++||++....++..+.+|...               +..++|+|++.+|++++.||.|++|
T Consensus       297 g------~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iw  369 (447)
T 3dw8_B          297 G------RYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMF  369 (447)
T ss_dssp             S------SEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEE
T ss_pred             C------CEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEE
Confidence            9      89999999 7 9999999744777777777532               2349999999999999999999999


Q ss_pred             EccccccCCCCCCCCccCcc----------ccc-------------eE-EEecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 008363          305 SLLKAAYDVPATGKPFAGTK----------QQG-------------LH-LVNCSSFAIWSVQVSRLTGMVAYCSADGTVH  360 (568)
Q Consensus       305 d~~~~~~~~~~~g~~~~~~~----------~~~-------------l~-~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~  360 (568)
                      |+..        ++.+.-..          ...             +. ....+...|..++|+|++.+||+++.++ ++
T Consensus       370 d~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~  440 (447)
T 3dw8_B          370 DRNT--------KRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LY  440 (447)
T ss_dssp             ETTT--------CCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EE
T ss_pred             EcCC--------CcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-ee
Confidence            9954        22210000          000             00 0012346789999999999999998775 77


Q ss_pred             EEEc
Q 008363          361 RFQL  364 (568)
Q Consensus       361 iwd~  364 (568)
                      +|..
T Consensus       441 ~~~~  444 (447)
T 3dw8_B          441 IFQD  444 (447)
T ss_dssp             EEEC
T ss_pred             eecc
Confidence            7764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.91  E-value=1.1e-22  Score=204.09  Aligned_cols=183  Identities=16%  Similarity=0.198  Sum_probs=147.7

Q ss_pred             ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEcc--CCCCCCCCcEEE
Q 008363          174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAP--AESDSDSANVIL  251 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p--~~~~~~~~~~la  251 (568)
                      +.+|...| ++++|+  |++.+|++|+.||+|++||+.....  .......+.+|...|.+++|+|  ++      .+|+
T Consensus         7 ~~gH~~~v-~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~d~------~~l~   75 (351)
T 3f3f_A            7 DSGHDDLV-HDVVYD--FYGRHVATCSSDQHIKVFKLDKDTS--NWELSDSWRAHDSSIVAIDWASPEYG------RIIA   75 (351)
T ss_dssp             ECCCSSCE-EEEEEC--SSSSEEEEEETTSEEEEEEECSSSC--CEEEEEEEECCSSCEEEEEECCGGGC------SEEE
T ss_pred             Ccccccce-eEEEEc--CCCCEEEEeeCCCeEEEEECCCCCC--cceecceeccCCCcEEEEEEcCCCCC------CEEE
Confidence            37899999 999999  8899999999999999999986522  1246677889999999999999  46      8999


Q ss_pred             EEcCCC-EEEEECCCCC--------cceeeeCCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEccccccCCCC-----
Q 008363          252 TAGHGG-LKFWDIRDPF--------RPLWDIHPAPKFIYGLDWLPD--PGCVILSFDDGAMRIVSLLKAAYDVPA-----  315 (568)
Q Consensus       252 s~s~d~-v~lwD~~~~~--------~~~~~~~~h~~~i~~l~~sp~--~~~l~s~~~dg~I~lwd~~~~~~~~~~-----  315 (568)
                      +++.|+ |++||++...        .++..+..|...|++++|+|+  +.+|++++.||.|++||++....-...     
T Consensus        76 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  155 (351)
T 3f3f_A           76 SASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE  155 (351)
T ss_dssp             EEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEE
T ss_pred             EEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccc
Confidence            999999 9999998763        446778899999999999999  999999999999999998653311000     


Q ss_pred             -------------------------CCCCc--------------cCccccceEEEecCCCCEEEEEEecCC----CEEEE
Q 008363          316 -------------------------TGKPF--------------AGTKQQGLHLVNCSSFAIWSVQVSRLT----GMVAY  352 (568)
Q Consensus       316 -------------------------~g~~~--------------~~~~~~~l~~~~~h~~~V~~l~~sp~~----~~l~s  352 (568)
                                               .+..+              .......+..+.+|...|++++|+|++    .+|++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s  235 (351)
T 3f3f_A          156 MKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT  235 (351)
T ss_dssp             EESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred             ccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE
Confidence                                     00000              000112355677899999999999998    89999


Q ss_pred             EeCCCeEEEEEcCCC
Q 008363          353 CSADGTVHRFQLTAK  367 (568)
Q Consensus       353 ~s~Dg~v~iwd~~~~  367 (568)
                      ++.||.|++||+..+
T Consensus       236 ~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          236 GCKDGRIRIFKITEK  250 (351)
T ss_dssp             EETTSCEEEEEEEEC
T ss_pred             EcCCCeEEEEeCCCC
Confidence            999999999999764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.8e-22  Score=204.27  Aligned_cols=198  Identities=10%  Similarity=-0.014  Sum_probs=153.8

Q ss_pred             eccCCceeeEEEEcc--CCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363           96 LAHNGKVAWDVKWKP--YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML  173 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp--~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~  173 (568)
                      .+|.+ .|.+++|+|  ++          .+|++|+.||+|+|||+.+++++....                        
T Consensus       122 ~~~~~-~v~~~~~~~~~~~----------~~l~s~s~dg~i~~wd~~~~~~~~~~~------------------------  166 (343)
T 3lrv_A          122 VDSAN-EIIYMYGHNEVNT----------EYFIWADNRGTIGFQSYEDDSQYIVHS------------------------  166 (343)
T ss_dssp             CCCSS-CEEEEECCC---C----------CEEEEEETTCCEEEEESSSSCEEEEEC------------------------
T ss_pred             cCCCC-CEEEEEcCCCCCC----------CEEEEEeCCCcEEEEECCCCcEEEEEe------------------------
Confidence            35666 455999999  88          799999999999999999987754431                        


Q ss_pred             ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCcee-EEeeC-CCCCeeEEEEccCCCCCCCCcEEE
Q 008363          174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPL-LCFSA-DTLPIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~-~~~~~-h~~~V~~v~~~p~~~~~~~~~~la  251 (568)
                       ..|...+ .+++|+  |++.+|++|+.||+|+|||++++      ..+ ..+.. |.++|.+|+|+|++      .+|+
T Consensus       167 -~~~~~~i-~~~~~~--pdg~~lasg~~dg~i~iwd~~~~------~~~~~~~~~~h~~~v~~l~fs~~g------~~l~  230 (343)
T 3lrv_A          167 -AKSDVEY-SSGVLH--KDSLLLALYSPDGILDVYNLSSP------DQASSRFPVDEEAKIKEVKFADNG------YWMV  230 (343)
T ss_dssp             -CCSSCCC-CEEEEC--TTSCEEEEECTTSCEEEEESSCT------TSCCEECCCCTTSCEEEEEECTTS------SEEE
T ss_pred             -cCCCCce-EEEEEC--CCCCEEEEEcCCCEEEEEECCCC------CCCccEEeccCCCCEEEEEEeCCC------CEEE
Confidence             2344567 999999  88999999999999999999977      555 67777 99999999999999      8999


Q ss_pred             EEcCCCEEEEECCCCCcceeeeCC---CCCCeE--EEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccc
Q 008363          252 TAGHGGLKFWDIRDPFRPLWDIHP---APKFIY--GLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQ  325 (568)
Q Consensus       252 s~s~d~v~lwD~~~~~~~~~~~~~---h~~~i~--~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~  325 (568)
                      +++++.|++||+++. ..+..+..   |...+.  +++|+|++++|++++. |+.|++|++....       +.      
T Consensus       231 s~~~~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~-------~~------  296 (343)
T 3lrv_A          231 VECDQTVVCFDLRKD-VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT-------KN------  296 (343)
T ss_dssp             EEESSBEEEEETTSS-TTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT-------CS------
T ss_pred             EEeCCeEEEEEcCCC-CcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc-------cc------
Confidence            999556999999987 44433332   334443  6999999999999988 9999999995411       11      


Q ss_pred             cceEEEecCCCCEEEEEEec---CCCEEEEEeCCCeEEEEEcC
Q 008363          326 QGLHLVNCSSFAIWSVQVSR---LTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       326 ~~l~~~~~h~~~V~~l~~sp---~~~~l~s~s~Dg~v~iwd~~  365 (568)
                         ...    .++..++|.+   +...|++++.||.+.++-..
T Consensus       297 ---~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          297 ---WTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             ---EEE----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred             ---eEe----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence               111    5677888998   78899999999999988654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.3e-22  Score=230.97  Aligned_cols=251  Identities=12%  Similarity=0.098  Sum_probs=171.4

Q ss_pred             ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeE-EeccCCccCCCCceE--EE-------ee
Q 008363           97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKA-IYLSSMKEGTDPRFV--KL-------EP  166 (568)
Q Consensus        97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~-l~~~~~~~~~~~~~v--~~-------~~  166 (568)
                      .|.+.++ ++.|.++......-......|++++.||.|++|++.++..... ...+.......+.+.  .+       |.
T Consensus       340 ~~~~~v~-~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~  418 (902)
T 2oaj_A          340 PTNVPIV-NILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWL  418 (902)
T ss_dssp             SSSSCEE-EEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHH
T ss_pred             CCCCceE-EEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHH
Confidence            3555444 8888763100000000114788899999999999987643321 101111111111110  11       10


Q ss_pred             c-----ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeE-Eee-----CCCCCeeEE
Q 008363          167 V-----FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLL-CFS-----ADTLPIRAV  235 (568)
Q Consensus       167 ~-----~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~-----~h~~~V~~v  235 (568)
                      .     ......+.||...+ .+++|+  |++++|++|+.||+|++||+..+.... ...+. .+.     +|...|.+|
T Consensus       419 ~~~~~~~~~~~~l~G~~~~v-~sv~~s--pdg~~laSgs~DgtVrlWd~~~g~~~~-~~~~~~~l~~~~~~~h~~~V~sv  494 (902)
T 2oaj_A          419 GALSAAQNKDYLLKGGVRTK-RQKLPA--EYGTAFITGHSNGSVRIYDASHGDIQD-NASFEVNLSRTLNKAKELAVDKI  494 (902)
T ss_dssp             HHHHTTBCCCCSCCCSBCCC-CCCCCC--SEEEEEEEEETTSEEEEEESSCCTTTT-TBCEEEEHHHHTTCSSSCCEEEE
T ss_pred             HHHhcccCCCCcccCCcCCC-Cccccc--ccCcEEEEecCCCcEEEEECCCccccC-CceEEeechhhcCCCCCCceeEE
Confidence            0     01122457888888 889988  889999999999999999998763211 01111 122     899999999


Q ss_pred             EEccCCCCCCCCcEEEEEcCCC-EEEEECCCCC--------------------------------------------cce
Q 008363          236 SWAPAESDSDSANVILTAGHGG-LKFWDIRDPF--------------------------------------------RPL  270 (568)
Q Consensus       236 ~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~--------------------------------------------~~~  270 (568)
                      +|+|++      .+||+|+.|+ |+|||+.+..                                            .++
T Consensus       495 afspdg------~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  568 (902)
T 2oaj_A          495 SFAAET------LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPS  568 (902)
T ss_dssp             EEETTT------TEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEE
T ss_pred             EecCCC------CeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcccee
Confidence            999999      8999999999 9999997651                                            236


Q ss_pred             eeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe-cCCCCEEEEEEe-----
Q 008363          271 WDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN-CSSFAIWSVQVS-----  344 (568)
Q Consensus       271 ~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~-~h~~~V~~l~~s-----  344 (568)
                      ..+.+|.+.|++|+|+||| +|++|+.|++|+|||++.        +..+..   ..+..+. +|...|++|+|+     
T Consensus       569 ~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~--------~~~~~~---~~~~~~~~gh~~~V~sv~Fs~~~~~  636 (902)
T 2oaj_A          569 TAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRG--------PAIIYM---ENIREISGAQSACVTCIEFVIMEYG  636 (902)
T ss_dssp             EEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTT--------TEEEEE---EEGGGTCSSCCCCEEEEEEEEEECT
T ss_pred             EEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCC--------CeEEEE---eehhHhccccccceEEEEEEEEecC
Confidence            7788999999999999999 999999999999999843        211100   0011233 899999999999     


Q ss_pred             cCC---CEEEEEeCCCeEEEEEc---CCCeee
Q 008363          345 RLT---GMVAYCSADGTVHRFQL---TAKAVE  370 (568)
Q Consensus       345 p~~---~~l~s~s~Dg~v~iwd~---~~~~~~  370 (568)
                      |||   .+|++++.|++|++||+   .++...
T Consensus       637 ~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~  668 (902)
T 2oaj_A          637 DDGYSSILMVCGTDMGEVITYKILPASGGKFD  668 (902)
T ss_dssp             TSSSEEEEEEEEETTSEEEEEEEEECGGGCEE
T ss_pred             CCCCcceEEEEEecCCcEEEEEEecCCCCcEE
Confidence            885   89999999999999999   555543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.90  E-value=4.6e-22  Score=204.90  Aligned_cols=226  Identities=18%  Similarity=0.244  Sum_probs=153.7

Q ss_pred             ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC----------------ccCCCCc
Q 008363           97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM----------------KEGTDPR  160 (568)
Q Consensus        97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~----------------~~~~~~~  160 (568)
                      +|.+ .|.+++|+|++.         .+|++++.||.|++||+.+++....+.....                +.+..++
T Consensus        97 ~~~~-~v~~~~~~~~~~---------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (408)
T 4a11_B           97 VHRY-SVETVQWYPHDT---------GMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGP  166 (408)
T ss_dssp             CCSS-CEEEEEECTTCT---------TCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSS
T ss_pred             cCCC-cEEEEEEccCCC---------cEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCC
Confidence            4777 555999999443         7999999999999999999887766643322                3455677


Q ss_pred             eEEEeecce--ecccccCCcCccceEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCCCCceeEEe------------
Q 008363          161 FVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSIDSRPLLCF------------  225 (568)
Q Consensus       161 ~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~------------  225 (568)
                      .+.+|+...  +...+.+|...| .+++|+  |++. +|++|+.||.|++||++...     .++..+            
T Consensus       167 ~v~~~d~~~~~~~~~~~~~~~~v-~~~~~~--~~~~~ll~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~~  238 (408)
T 4a11_B          167 KVQLCDLKSGSCSHILQGHRQEI-LAVSWS--PRYDYILATASADSRVKLWDVRRAS-----GCLITLDQHNGKKSQAVE  238 (408)
T ss_dssp             SEEEEESSSSCCCEEECCCCSCE-EEEEEC--SSCTTEEEEEETTSCEEEEETTCSS-----CCSEECCTTTTCSCCCTT
T ss_pred             eEEEEeCCCcceeeeecCCCCcE-EEEEEC--CCCCcEEEEEcCCCcEEEEECCCCC-----cccccccccccccceeec
Confidence            888998765  455667899999 999999  7777 69999999999999998652     133333            


Q ss_pred             ---eCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCC----------------------------------
Q 008363          226 ---SADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPF----------------------------------  267 (568)
Q Consensus       226 ---~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~----------------------------------  267 (568)
                         .+|...|.+++|+|++      .+|++++.|+ |++||+++..                                  
T Consensus       239 ~~~~~~~~~v~~~~~~~~~------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (408)
T 4a11_B          239 SANTAHNGKVNGLCFTSDG------LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY  312 (408)
T ss_dssp             TSSCSCSSCEEEEEECTTS------SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE
T ss_pred             cccccccCceeEEEEcCCC------CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec
Confidence               5789999999999998      8999999998 9999998642                                  


Q ss_pred             ------------cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCC
Q 008363          268 ------------RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS  335 (568)
Q Consensus       268 ------------~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~  335 (568)
                                  .++..+.+|...|++++|+|++++|++++.||.|++||++.        ++++        .....+.
T Consensus       313 ~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~--------~~~~--------~~~~~~~  376 (408)
T 4a11_B          313 GSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL--------YEPV--------PDDDETT  376 (408)
T ss_dssp             TTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------------------------
T ss_pred             CCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC--------CCcc--------CCCCceE
Confidence                        23455678999999999999999999999999999999954        3222        1211111


Q ss_pred             CCEEEEEEecC-CCEEEEEeCCCeEEEEEcC
Q 008363          336 FAIWSVQVSRL-TGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       336 ~~V~~l~~sp~-~~~l~s~s~Dg~v~iwd~~  365 (568)
                         ....+.+. ...+.+++.|+.+++|+..
T Consensus       377 ---~~~~~~~~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          377 ---TKSQLNPAFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             -------------------------------
T ss_pred             ---eccccccccceeecccCccCceeecCCc
Confidence               12233333 3455677789999999873

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.89  E-value=2.2e-21  Score=194.87  Aligned_cols=188  Identities=14%  Similarity=0.166  Sum_probs=162.6

Q ss_pred             ccCCCCceEEEeecce-------ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee
Q 008363          154 KEGTDPRFVKLEPVFR-------CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS  226 (568)
Q Consensus       154 ~~~~~~~~v~~~~~~~-------~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~  226 (568)
                      ++++.|+.+++|+...       +...+.+|...| .+++|+  |++.+|++|+.||.|++|+....      .......
T Consensus        55 ~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V-~~~~~s--~dg~~l~s~~~d~~i~~~~~~~~------~~~~~~~  125 (340)
T 4aow_A           55 LSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV-SDVVIS--SDGQFALSGSWDGTLRLWDLTTG------TTTRRFV  125 (340)
T ss_dssp             EEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCE-EEEEEC--TTSSEEEEEETTSEEEEEETTTT------EEEEEEE
T ss_pred             EEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCE-EEEEEC--CCCCEEEEEcccccceEEeeccc------ceeeeec
Confidence            4678899999998754       345668999999 999999  88999999999999999999866      6777778


Q ss_pred             CCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCC--CEEEEEeCCCcEEE
Q 008363          227 ADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDP--GCVILSFDDGAMRI  303 (568)
Q Consensus       227 ~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~--~~l~s~~~dg~I~l  303 (568)
                      .+...+..+.+++.+      .+|++++.|+ +++||+.........+.+|...+..++|++++  .++++++.|+.|++
T Consensus       126 ~~~~~~~~~~~~~~~------~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i  199 (340)
T 4aow_A          126 GHTKDVLSVAFSSDN------RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV  199 (340)
T ss_dssp             CCSSCEEEEEECTTS------SCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEE
T ss_pred             CCCCceeEEEEeecC------ccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEE
Confidence            889999999999998      8999999999 99999987655556677899999999999865  56788999999999


Q ss_pred             EEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          304 VSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       304 wd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                      ||++.        +        ..+..+.+|...|++++|+|++.+|++++.||.|++||+.+......
T Consensus       200 ~d~~~--------~--------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~  252 (340)
T 4aow_A          200 WNLAN--------C--------KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT  252 (340)
T ss_dssp             EETTT--------T--------EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             EECCC--------C--------ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee
Confidence            99954        3        33468889999999999999999999999999999999987765543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.89  E-value=2.5e-21  Score=197.06  Aligned_cols=238  Identities=11%  Similarity=0.103  Sum_probs=163.2

Q ss_pred             eEEEEccCCCCcccccCcccEE-EEEeCCCcEEEEECCCCceeeEEeccCC----------ccCCCCceEEEeecceecc
Q 008363          104 WDVKWKPYNAVDCKCKQRLGYL-AVLLGNGSLEVWEVPLLRTMKAIYLSSM----------KEGTDPRFVKLEPVFRCSM  172 (568)
Q Consensus       104 ~~v~~sp~~~~~~~~~~~~~~l-as~s~dg~V~iwd~~~~~~~~~l~~~~~----------~~~~~~~~v~~~~~~~~~~  172 (568)
                      ..++|.+++          +.+ ++++.|++|+|||+.+++++..+..+..          .....+..+++|+......
T Consensus        62 ~~~~~~~~~----------~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~  131 (355)
T 3vu4_A           62 SKVRMLHRT----------NYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWK  131 (355)
T ss_dssp             CEEEECTTS----------SEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCC
T ss_pred             EEEEEcCCC----------CEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCce
Confidence            378888887          455 6778889999999999988877754332          1112345677777654211


Q ss_pred             cccCCcCccceEEEEccCCCCCEEEE--EeCCCeEEEEEccCCCCC---------CCCce-eEEeeCCCCCeeEEEEccC
Q 008363          173 LKCGGTQSIPLTMEWSTSPPHDYLLA--GCHDGTVALWKFVASDSS---------IDSRP-LLCFSADTLPIRAVSWAPA  240 (568)
Q Consensus       173 ~~~~h~~~V~~~v~~s~~~~g~~l~s--gs~Dg~I~iwd~~~~~~~---------~~~~~-~~~~~~h~~~V~~v~~~p~  240 (568)
                      ......... ..++++  +  .++++  |+.||.|++||+.+....         ....+ +..+.+|...|.+++|+|+
T Consensus       132 ~~~~~~~~~-~~~~~s--~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~  206 (355)
T 3vu4_A          132 RITDDIRFG-GVCEFS--N--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK  206 (355)
T ss_dssp             BSSCCEEEE-EEEEEE--T--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT
T ss_pred             eeEEeccCC-ceEEEE--c--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC
Confidence            111111122 345555  3  46665  689999999999865200         00112 7788999999999999999


Q ss_pred             CCCCCCCcEEEEEcCCC--EEEEECCCCCcceeeeC-C-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCC
Q 008363          241 ESDSDSANVILTAGHGG--LKFWDIRDPFRPLWDIH-P-APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPAT  316 (568)
Q Consensus       241 ~~~~~~~~~las~s~d~--v~lwD~~~~~~~~~~~~-~-h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~  316 (568)
                      +      .+||+|+.|+  |++||++++ .++..+. + |...|++++|+|++++|++++.|++|++||++......   
T Consensus       207 g------~~l~s~s~d~~~v~iwd~~~~-~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~---  276 (355)
T 3vu4_A          207 S------DMVATCSQDGTIIRVFKTEDG-VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNK---  276 (355)
T ss_dssp             S------SEEEEEETTCSEEEEEETTTC-CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCC---
T ss_pred             C------CEEEEEeCCCCEEEEEECCCC-cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcc---
Confidence            9      8999999986  999999987 7777776 5 99999999999999999999999999999996532110   


Q ss_pred             CCCccC-------ccccceEEEe---cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          317 GKPFAG-------TKQQGLHLVN---CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       317 g~~~~~-------~~~~~l~~~~---~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                      ...+..       .....+..+.   .+......++|++++.+|++++.||.+++|++..
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          277 RHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             SEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred             cccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence            000000       0000001111   1222346789999999999999999999999853

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.89  E-value=6.1e-21  Score=188.07  Aligned_cols=240  Identities=11%  Similarity=0.062  Sum_probs=168.1

Q ss_pred             EEEEEeCCCcEEEEECCCC---ceeeEEeccCCccCCCCceEEEeecce-----ecccccCCcCccceEEEEccCCC---
Q 008363          124 YLAVLLGNGSLEVWEVPLL---RTMKAIYLSSMKEGTDPRFVKLEPVFR-----CSMLKCGGTQSIPLTMEWSTSPP---  192 (568)
Q Consensus       124 ~las~s~dg~V~iwd~~~~---~~~~~l~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~h~~~V~~~v~~s~~~~---  192 (568)
                      .+++++. ..|++|+..++   ++++++..+..      .++.+.+...     |..+-.-+...| .+|+++  |+   
T Consensus        56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~~~~~~~~~~~~v-~sla~s--pd~~~  125 (356)
T 2w18_A           56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEV------PVLQIVPVPDVYNLVCVALGNLEIREI-RALFCS--SDDES  125 (356)
T ss_dssp             EEEEEES-SEEEEEEESSSSBEEEEEEEECCSS------CEEEECCCTTCCSCEEEEECSSSEEEE-EEECC--------
T ss_pred             EEEEecc-ceEEEcccCCCccceeeEEEeccCc------eeEEEEEcCcccceeeeeeccccccce-EEEEEC--CCccc
Confidence            5666665 78999999998   77888766542      2333333221     222223345566 677766  66   


Q ss_pred             -CCEEEEEe--------------------CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEcc---CCCCCCCCc
Q 008363          193 -HDYLLAGC--------------------HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAP---AESDSDSAN  248 (568)
Q Consensus       193 -g~~l~sgs--------------------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p---~~~~~~~~~  248 (568)
                       +.++++++                    .|++|++|++...     ++.+..+.+|...++.++|++   ++      .
T Consensus       126 ~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~d-----G~~~~s~~~~~~~v~~l~fs~~~g~~------~  194 (356)
T 2w18_A          126 EKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAED-----GGGKENQFLMPPEETILTFAEVQGMQ------E  194 (356)
T ss_dssp             CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTT-----SCEEEEEEECCCSSCEEEEEEEETST------T
T ss_pred             cccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCC-----CceeeeeccCCCceeeEEeeccCCCC------c
Confidence             55666544                    3888999998542     367777788999999999999   55      8


Q ss_pred             EEEEEcCCC-EEEEECCCCCcceeeeCCCC---CCeEEEEEcCCCCEE------------EEEeCCCcEEEEEccccccC
Q 008363          249 VILTAGHGG-LKFWDIRDPFRPLWDIHPAP---KFIYGLDWLPDPGCV------------ILSFDDGAMRIVSLLKAAYD  312 (568)
Q Consensus       249 ~las~s~d~-v~lwD~~~~~~~~~~~~~h~---~~i~~l~~sp~~~~l------------~s~~~dg~I~lwd~~~~~~~  312 (568)
                      +||+++.|+ |+|||+.++ +++.++.+|.   ..+.+++|+|+|.++            ++|+.|++|++||..     
T Consensus       195 ~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~-----  268 (356)
T 2w18_A          195 ALLGTTIMNNIVIWNLKTG-QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPK-----  268 (356)
T ss_dssp             EEEEEETTSEEEEEETTTC-CEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETT-----
T ss_pred             eEEEecCCCcEEEEECCCC-cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECC-----
Confidence            999999999 999999988 7888887654   357788999999887            457789999999994     


Q ss_pred             CCCCCCCccCccccceEEE-----ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeeccc
Q 008363          313 VPATGKPFAGTKQQGLHLV-----NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVT  387 (568)
Q Consensus       313 ~~~~g~~~~~~~~~~l~~~-----~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~  387 (568)
                         +|+.+        ..+     .+|...+.+..++  +.++++++.|++|+|||+.+++.......+......+.+++
T Consensus       269 ---tgk~l--------~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafS  335 (356)
T 2w18_A          269 ---TTLSV--------GVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWS  335 (356)
T ss_dssp             ---TTEEE--------EEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEEC
T ss_pred             ---CCEEE--------EEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEEC
Confidence               35432        232     3676665555554  88999999999999999999987776544443344446799


Q ss_pred             CCCCceEEcccCCCCC
Q 008363          388 EDESAITVNTPLDNTP  403 (568)
Q Consensus       388 ~~~~~i~~~~~~~~~~  403 (568)
                      +++..|+.++....+.
T Consensus       336 PDG~~LaSGS~D~TIk  351 (356)
T 2w18_A          336 GTDSHLLAGQKDGNIF  351 (356)
T ss_dssp             SSSSEEEEECTTSCEE
T ss_pred             CCCCEEEEEECCCcEE
Confidence            9999999887766553

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.87  E-value=8.8e-20  Score=187.43  Aligned_cols=224  Identities=10%  Similarity=0.058  Sum_probs=170.5

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEE-EEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYL-AVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~l-as~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      ..|.. + .+++|+|++          .+| ++++.|+.|++||+.+++.+..+                          
T Consensus        29 ~~~~~-~-~~~~~s~dg----------~~l~~~~~~d~~i~v~d~~~~~~~~~~--------------------------   70 (391)
T 1l0q_A           29 PVGSN-P-MGAVISPDG----------TKVYVANAHSNDVSIIDTATNNVIATV--------------------------   70 (391)
T ss_dssp             ECSSS-E-EEEEECTTS----------SEEEEEEGGGTEEEEEETTTTEEEEEE--------------------------
T ss_pred             ecCCC-c-ceEEECCCC----------CEEEEECCCCCeEEEEECCCCeEEEEE--------------------------
Confidence            34443 4 599999999          555 67779999999999998877665                          


Q ss_pred             cCCcCccceEEEEccCCCCCEEE-EEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE-EE
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLL-AGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI-LT  252 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l-as  252 (568)
                      ..+. .+ .+++|+  |++++|+ +++.|+.|++||+.++      +.+..+..| ..+.+++|+|++      +.| ++
T Consensus        71 ~~~~-~v-~~~~~s--pdg~~l~~~~~~~~~v~v~d~~~~------~~~~~~~~~-~~~~~~~~s~dg------~~l~~~  133 (391)
T 1l0q_A           71 PAGS-SP-QGVAVS--PDGKQVYVTNMASSTLSVIDTTSN------TVAGTVKTG-KSPLGLALSPDG------KKLYVT  133 (391)
T ss_dssp             ECSS-SE-EEEEEC--TTSSEEEEEETTTTEEEEEETTTT------EEEEEEECS-SSEEEEEECTTS------SEEEEE
T ss_pred             ECCC-Cc-cceEEC--CCCCEEEEEECCCCEEEEEECCCC------eEEEEEeCC-CCcceEEECCCC------CEEEEE
Confidence            2222 56 899999  8888775 4556799999999876      667766554 568999999998      655 78


Q ss_pred             EcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363          253 AGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVI-LSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL  330 (568)
Q Consensus       253 ~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~-s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~  330 (568)
                      ++.++ |++||+.++ ..+..+..+ ..+.+++|+|++++|+ +++.++.|++||++.        ++.        +..
T Consensus       134 ~~~~~~v~~~d~~~~-~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~--------~~~--------~~~  195 (391)
T 1l0q_A          134 NNGDKTVSVINTVTK-AVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT--------NSV--------IDT  195 (391)
T ss_dssp             ETTTTEEEEEETTTT-EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT--------TEE--------EEE
T ss_pred             eCCCCEEEEEECCCC-cEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC--------CeE--------EEE
Confidence            88888 999999977 666666554 4579999999999885 566789999999954        322        234


Q ss_pred             EecCCCCEEEEEEecCCCEEEEEe---CCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEE
Q 008363          331 VNCSSFAIWSVQVSRLTGMVAYCS---ADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITV  395 (568)
Q Consensus       331 ~~~h~~~V~~l~~sp~~~~l~s~s---~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~  395 (568)
                      +. +...+.+++|+|++.+|++++   .|+.|++||+.++...........  ..+..+++++..+.+
T Consensus       196 ~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~  260 (391)
T 1l0q_A          196 VK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD--PAGIAVTPDGKKVYV  260 (391)
T ss_dssp             EE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS--EEEEEECTTSSEEEE
T ss_pred             Ee-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC--ccEEEEccCCCEEEE
Confidence            43 566889999999999998888   699999999998766554333322  345577888877744

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.87  E-value=1.5e-20  Score=196.00  Aligned_cols=228  Identities=10%  Similarity=0.026  Sum_probs=176.5

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      +. +++|+|++          .++++++.++.|++||+.+++....+..                     ....+|...|
T Consensus       125 ~~-~~~~s~~~----------~~~~~~~~~~~i~~~d~~~g~~~~~~~~---------------------~~~~~~~~~v  172 (433)
T 3bws_A          125 PK-SVRFIDNT----------RLAIPLLEDEGMDVLDINSGQTVRLSPP---------------------EKYKKKLGFV  172 (433)
T ss_dssp             BC-CCEESSSS----------EEEEEBTTSSSEEEEETTTCCEEEECCC---------------------HHHHTTCCEE
T ss_pred             ce-EEEEeCCC----------eEEEEeCCCCeEEEEECCCCeEeeecCc---------------------ccccccCCce
Confidence            44 89999965          6888888899999999999877643211                     0115788888


Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE-EEEcCCC-EE
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI-LTAGHGG-LK  259 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l-as~s~d~-v~  259 (568)
                       .+++|+  +++.++++++.|+.|++||+.+.      ..+..+..|...+.+++|+|++      .++ ++++.++ |+
T Consensus       173 -~~~~~~--~~~~~~~s~~~d~~v~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~~~i~  237 (433)
T 3bws_A          173 -ETISIP--EHNELWVSQMQANAVHVFDLKTL------AYKATVDLTGKWSKILLYDPIR------DLVYCSNWISEDIS  237 (433)
T ss_dssp             -EEEEEG--GGTEEEEEEGGGTEEEEEETTTC------CEEEEEECSSSSEEEEEEETTT------TEEEEEETTTTEEE
T ss_pred             -eEEEEc--CCCEEEEEECCCCEEEEEECCCc------eEEEEEcCCCCCeeEEEEcCCC------CEEEEEecCCCcEE
Confidence             999998  78899999999999999999866      7778888899999999999998      555 6666788 99


Q ss_pred             EEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe--------CCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363          260 FWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF--------DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV  331 (568)
Q Consensus       260 lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~--------~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~  331 (568)
                      +||++++ ..+..+.. ...+.+++|+|++++|++++        .|+.|++||++.        ++.+         ..
T Consensus       238 ~~d~~~~-~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~--------~~~~---------~~  298 (433)
T 3bws_A          238 VIDRKTK-LEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK--------EKLI---------DT  298 (433)
T ss_dssp             EEETTTT-EEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT--------TEEE---------EE
T ss_pred             EEECCCC-cEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC--------CcEE---------ee
Confidence            9999977 66666654 44589999999999999987        588999999953        4332         22


Q ss_pred             ecCCCCEEEEEEecCCC-EEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363          332 NCSSFAIWSVQVSRLTG-MVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNT  397 (568)
Q Consensus       332 ~~h~~~V~~l~~sp~~~-~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~  397 (568)
                      ..|...+.+++|+|+++ ++++++.|+.|++||+.+++........  ....+.++++++..+.+..
T Consensus       299 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~  363 (433)
T 3bws_A          299 IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF--DKPNTIALSPDGKYLYVSC  363 (433)
T ss_dssp             EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEE
T ss_pred             ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCC--CCCCeEEEcCCCCEEEEEe
Confidence            34566889999999996 4566789999999999987665443222  2233456777777666654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.86  E-value=8.9e-20  Score=190.09  Aligned_cols=227  Identities=10%  Similarity=0.024  Sum_probs=176.0

Q ss_pred             ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363           97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG  176 (568)
Q Consensus        97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~  176 (568)
                      +|.+ .+++++|+|++          .++++++.|+.|++||+.+++.+..+                          ..
T Consensus       167 ~~~~-~v~~~~~~~~~----------~~~~s~~~d~~v~~~d~~~~~~~~~~--------------------------~~  209 (433)
T 3bws_A          167 KKLG-FVETISIPEHN----------ELWVSQMQANAVHVFDLKTLAYKATV--------------------------DL  209 (433)
T ss_dssp             TTCC-EEEEEEEGGGT----------EEEEEEGGGTEEEEEETTTCCEEEEE--------------------------EC
T ss_pred             ccCC-ceeEEEEcCCC----------EEEEEECCCCEEEEEECCCceEEEEE--------------------------cC
Confidence            6666 66699999998          79999999999999999998877665                          45


Q ss_pred             CcCccceEEEEccCCCCCEEE-EEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc-
Q 008363          177 GTQSIPLTMEWSTSPPHDYLL-AGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG-  254 (568)
Q Consensus       177 h~~~V~~~v~~s~~~~g~~l~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s-  254 (568)
                      |...+ .+++|+  |++.+++ +++.|+.|++||+.++      ..+..+..+ ..+.+++|+|++      .+|++++ 
T Consensus       210 ~~~~~-~~~~~~--~~~~~l~~~~~~~~~i~~~d~~~~------~~~~~~~~~-~~~~~~~~~~~g------~~l~~~~~  273 (433)
T 3bws_A          210 TGKWS-KILLYD--PIRDLVYCSNWISEDISVIDRKTK------LEIRKTDKI-GLPRGLLLSKDG------KELYIAQF  273 (433)
T ss_dssp             SSSSE-EEEEEE--TTTTEEEEEETTTTEEEEEETTTT------EEEEECCCC-SEEEEEEECTTS------SEEEEEEE
T ss_pred             CCCCe-eEEEEc--CCCCEEEEEecCCCcEEEEECCCC------cEEEEecCC-CCceEEEEcCCC------CEEEEEEC
Confidence            66677 999999  7888775 5558999999999866      667777554 459999999998      7888877 


Q ss_pred             -------CCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEEccccccCCCCCCCCccCccc
Q 008363          255 -------HGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVIL-SFDDGAMRIVSLLKAAYDVPATGKPFAGTKQ  325 (568)
Q Consensus       255 -------~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s-~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~  325 (568)
                             .|+ |++||++++ ..+..+ .|...+.+++|+|+++.|++ ++.|+.|++||+..        ++.      
T Consensus       274 ~~~~~~~~dg~i~~~d~~~~-~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~--------~~~------  337 (433)
T 3bws_A          274 SASNQESGGGRLGIYSMDKE-KLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE--------KKV------  337 (433)
T ss_dssp             ESCTTCSCCEEEEEEETTTT-EEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT--------TEE------
T ss_pred             CCCccccCCCeEEEEECCCC-cEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC--------CcE------
Confidence                   477 999999976 544444 45567899999999986655 57799999999953        333      


Q ss_pred             cceEEEecCCCCEEEEEEecCCCEEEEEeC---------------CCeEEEEEcCCCeeeccCCCCCcceeeeecccCCC
Q 008363          326 QGLHLVNCSSFAIWSVQVSRLTGMVAYCSA---------------DGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDE  390 (568)
Q Consensus       326 ~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~---------------Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~  390 (568)
                        +..+. +...+.+++|+|++++|++++.               ||.|++||+.+++.........  ...+.++++++
T Consensus       338 --~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg  412 (433)
T 3bws_A          338 --QKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN--QPTGLDVSPDN  412 (433)
T ss_dssp             --EEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS--SEEEEEECTTS
T ss_pred             --EEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC--CCceEEEcCCC
Confidence              23444 6778999999999998888886               5799999998887665433322  23445678888


Q ss_pred             CceEEcc
Q 008363          391 SAITVNT  397 (568)
Q Consensus       391 ~~i~~~~  397 (568)
                      ..+.+..
T Consensus       413 ~~l~~~~  419 (433)
T 3bws_A          413 RYLVISD  419 (433)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEE
Confidence            7776543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.5e-19  Score=179.06  Aligned_cols=205  Identities=11%  Similarity=0.170  Sum_probs=164.7

Q ss_pred             cCCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCe
Q 008363          155 EGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPI  232 (568)
Q Consensus       155 ~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V  232 (568)
                      .++.++.+++|+...  .......|...| .+++|+  |++.+|++|+.||.|++|++.....   ..++..+.+|...|
T Consensus        34 s~~~dg~v~vw~~~~~~~~~~~~~~~~~v-~~~~~~--~~~~~l~~~~~dg~i~~~~~~~~~~---~~~~~~~~~~~~~i  107 (313)
T 3odt_A           34 SVSRDGTVRLWSKDDQWLGTVVYTGQGFL-NSVCYD--SEKELLLFGGKDTMINGVPLFATSG---EDPLYTLIGHQGNV  107 (313)
T ss_dssp             EEETTSEEEEEEESSSEEEEEEEECSSCE-EEEEEE--TTTTEEEEEETTSCEEEEETTCCTT---SCC-CEECCCSSCE
T ss_pred             EEEcCCcEEEEECCCCEEEEEeecCCccE-EEEEEC--CCCCEEEEecCCCeEEEEEeeecCC---CCcccchhhcccCE
Confidence            467888999999765  445567889999 999999  8899999999999999999875422   35567788999999


Q ss_pred             eEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEccccc
Q 008363          233 RAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLP-DPGCVILSFDDGAMRIVSLLKAA  310 (568)
Q Consensus       233 ~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp-~~~~l~s~~~dg~I~lwd~~~~~  310 (568)
                      .+++|  ++      .+|++++.|+ |++||  .. ..+..+..|...+.+++|+| ++.+|++++.||.|++||..   
T Consensus       108 ~~~~~--~~------~~l~~~~~d~~i~~~d--~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---  173 (313)
T 3odt_A          108 CSLSF--QD------GVVISGSWDKTAKVWK--EG-SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---  173 (313)
T ss_dssp             EEEEE--ET------TEEEEEETTSEEEEEE--TT-EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---
T ss_pred             EEEEe--cC------CEEEEEeCCCCEEEEc--CC-cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---
Confidence            99999  34      6999999999 99999  23 67778889999999999998 99999999999999999963   


Q ss_pred             cCCCCCCCCccCccccceEEEec-CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCC
Q 008363          311 YDVPATGKPFAGTKQQGLHLVNC-SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTED  389 (568)
Q Consensus       311 ~~~~~~g~~~~~~~~~~l~~~~~-h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~  389 (568)
                                     ..+..+.. |...|.+++|+|++. |++++.||.|++||+.++........+. ....+..++++
T Consensus       174 ---------------~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~  236 (313)
T 3odt_A          174 ---------------KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE-SFVYCIKLLPN  236 (313)
T ss_dssp             ---------------EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEECTT
T ss_pred             ---------------ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC-ceEEEEEEecC
Confidence                           23356666 899999999999988 9999999999999998876655433222 23445566666


Q ss_pred             CCceEEcc
Q 008363          390 ESAITVNT  397 (568)
Q Consensus       390 ~~~i~~~~  397 (568)
                      + .+..+.
T Consensus       237 ~-~l~~~~  243 (313)
T 3odt_A          237 G-DIVSCG  243 (313)
T ss_dssp             S-CEEEEE
T ss_pred             C-CEEEEe
Confidence            6 344443

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.85  E-value=6e-19  Score=183.37  Aligned_cols=249  Identities=10%  Similarity=0.120  Sum_probs=186.1

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEe----CCC----cEEEEEC--CCCcee--eEEeccCC-----------------
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLL----GNG----SLEVWEV--PLLRTM--KAIYLSSM-----------------  153 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s----~dg----~V~iwd~--~~~~~~--~~l~~~~~-----------------  153 (568)
                      +....|.+.+.         .++++|+    .||    .|+|||+  .+++++  ..+.++..                 
T Consensus        65 ~~~~~w~~~g~---------~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  135 (415)
T 2hqs_A           65 VQPAAWSALGI---------DAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKL  135 (415)
T ss_dssp             CCHHHHHTTTC---------CEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHhcCC---------CEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHH
Confidence            44788999886         6887886    568    8999999  888876  33544432                 


Q ss_pred             -----------cc---CCCC---ceEEEeecce-ecccccCCcCccceEEEEccCCCCCEEEEEeCCC---eEEEEEccC
Q 008363          154 -----------KE---GTDP---RFVKLEPVFR-CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDG---TVALWKFVA  212 (568)
Q Consensus       154 -----------~~---~~~~---~~v~~~~~~~-~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg---~I~iwd~~~  212 (568)
                                 +.   ...+   ..+.+|+... ....+.+|...+ .+++|+  |+|++|++++.|+   .|++||+.+
T Consensus       136 ~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v-~~~~~S--pdg~~la~~s~~~~~~~i~~~d~~t  212 (415)
T 2hqs_A          136 TGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPL-MSPAWS--PDGSKLAYVTFESGRSALVIQTLAN  212 (415)
T ss_dssp             HSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCE-EEEEEC--TTSSEEEEEECTTSSCEEEEEETTT
T ss_pred             cCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcc-eeeEEc--CCCCEEEEEEecCCCcEEEEEECCC
Confidence                       00   0112   6788888754 344556788888 999999  8999999999886   999999987


Q ss_pred             CCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE-EEcCC--C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCC
Q 008363          213 SDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL-TAGHG--G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPD  288 (568)
Q Consensus       213 ~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la-s~s~d--~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~  288 (568)
                      +      +.. .+..|...+.+++|+|++      +.|+ +++.+  . |++||+.++ . ...+..|...+.+++|+||
T Consensus       213 g------~~~-~l~~~~~~~~~~~~spdg------~~la~~~~~~g~~~i~~~d~~~~-~-~~~l~~~~~~~~~~~~spd  277 (415)
T 2hqs_A          213 G------AVR-QVASFPRHNGAPAFSPDG------SKLAFALSKTGSLNLYVMDLASG-Q-IRQVTDGRSNNTEPTWFPD  277 (415)
T ss_dssp             C------CEE-EEECCSSCEEEEEECTTS------SEEEEEECTTSSCEEEEEETTTC-C-EEECCCCSSCEEEEEECTT
T ss_pred             C------cEE-EeecCCCcccCEEEcCCC------CEEEEEEecCCCceEEEEECCCC-C-EEeCcCCCCcccceEECCC
Confidence            6      443 466788899999999999      6666 66654  3 999999876 3 3567788888999999999


Q ss_pred             CCEEEEEeC-CC--cEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCC---CeEEEE
Q 008363          289 PGCVILSFD-DG--AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD---GTVHRF  362 (568)
Q Consensus       289 ~~~l~s~~~-dg--~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D---g~v~iw  362 (568)
                      |++|++++. ++  .|++||+..        ++.         ..+..|...+.+++|+|+|++|++++.+   ..|++|
T Consensus       278 g~~l~~~s~~~g~~~i~~~d~~~--------~~~---------~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~  340 (415)
T 2hqs_A          278 SQNLAFTSDQAGRPQVYKVNING--------GAP---------QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ  340 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTS--------SCC---------EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEE
T ss_pred             CCEEEEEECCCCCcEEEEEECCC--------CCE---------EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEE
Confidence            999998886 45  577778742        332         3455577788999999999999988865   689999


Q ss_pred             EcCCCeeeccCCCCCcceeeeecccCCCCceEEccc
Q 008363          363 QLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTP  398 (568)
Q Consensus       363 d~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~  398 (568)
                      |+.++...... ...  ...+.++++++..|...+.
T Consensus       341 d~~~~~~~~l~-~~~--~~~~~~~spdg~~l~~~s~  373 (415)
T 2hqs_A          341 DLATGGVQVLS-STF--LDETPSLAPNGTMVIYSSS  373 (415)
T ss_dssp             ETTTCCEEECC-CSS--SCEEEEECTTSSEEEEEEE
T ss_pred             ECCCCCEEEec-CCC--CcCCeEEcCCCCEEEEEEc
Confidence            99987764432 222  4455578899988877553

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.85  E-value=4.5e-19  Score=182.10  Aligned_cols=205  Identities=12%  Similarity=0.078  Sum_probs=160.0

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEE-EEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYL-AVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML  173 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~l-as~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~  173 (568)
                      .+.+.. .+.+++|+|++          .+| ++++.++.|++||+.+++.+..+                         
T Consensus        69 ~~~~~~-~v~~~~~spdg----------~~l~~~~~~~~~v~v~d~~~~~~~~~~-------------------------  112 (391)
T 1l0q_A           69 TVPAGS-SPQGVAVSPDG----------KQVYVTNMASSTLSVIDTTSNTVAGTV-------------------------  112 (391)
T ss_dssp             EEECSS-SEEEEEECTTS----------SEEEEEETTTTEEEEEETTTTEEEEEE-------------------------
T ss_pred             EEECCC-CccceEECCCC----------CEEEEEECCCCEEEEEECCCCeEEEEE-------------------------
Confidence            334444 45599999999          566 45556799999999998777654                         


Q ss_pred             ccCCcCccceEEEEccCCCCCEE-EEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE-E
Q 008363          174 KCGGTQSIPLTMEWSTSPPHDYL-LAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI-L  251 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g~~l-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l-a  251 (568)
                       ..| ..+ .+++|+  ++++.| ++++.|+.|++||+.++      +.+..+..| ..+.+++|+|++      .+| +
T Consensus       113 -~~~-~~~-~~~~~s--~dg~~l~~~~~~~~~v~~~d~~~~------~~~~~~~~~-~~~~~~~~~~dg------~~l~~  174 (391)
T 1l0q_A          113 -KTG-KSP-LGLALS--PDGKKLYVTNNGDKTVSVINTVTK------AVINTVSVG-RSPKGIAVTPDG------TKVYV  174 (391)
T ss_dssp             -ECS-SSE-EEEEEC--TTSSEEEEEETTTTEEEEEETTTT------EEEEEEECC-SSEEEEEECTTS------SEEEE
T ss_pred             -eCC-CCc-ceEEEC--CCCCEEEEEeCCCCEEEEEECCCC------cEEEEEecC-CCcceEEECCCC------CEEEE
Confidence             222 344 899999  888877 78888999999999876      777777665 457999999998      555 6


Q ss_pred             EEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEEccccccCCCCCCCCccCccccc
Q 008363          252 TAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF---DDGAMRIVSLLKAAYDVPATGKPFAGTKQQG  327 (568)
Q Consensus       252 s~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~---~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~  327 (568)
                      +++.++ |++||+++. ..+..+. +...+.+++|+|++++|++++   .++.|++||++.        ++.        
T Consensus       175 ~~~~~~~v~~~d~~~~-~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~--------~~~--------  236 (391)
T 1l0q_A          175 ANFDSMSISVIDTVTN-SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT--------NKI--------  236 (391)
T ss_dssp             EETTTTEEEEEETTTT-EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT--------TEE--------
T ss_pred             EeCCCCEEEEEECCCC-eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC--------CeE--------
Confidence            778888 999999987 5555553 456789999999999999987   689999999953        432        


Q ss_pred             eEEEecCCCCEEEEEEecCCCEE-EEEeCCCeEEEEEcCCCeeecc
Q 008363          328 LHLVNCSSFAIWSVQVSRLTGMV-AYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       328 l~~~~~h~~~V~~l~~sp~~~~l-~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                      +..+..|. .+.+++|+|++++| ++++.|+.|++||+.++.....
T Consensus       237 ~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~  281 (391)
T 1l0q_A          237 TARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITAT  281 (391)
T ss_dssp             EEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEE
Confidence            35666654 57899999999877 6778899999999998776554

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.84  E-value=8e-19  Score=171.77  Aligned_cols=239  Identities=14%  Similarity=0.113  Sum_probs=170.0

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC-CceeeEEeccCCccCCCCceEEEeeccee
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEPVFRC  170 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~~~~  170 (568)
                      ......|.+ .+.+++|+|++          .+|++++ ++.|++||+.+ ++....+                      
T Consensus        34 ~~~~~~~~~-~v~~~~~spdg----------~~l~~~~-~~~i~~~d~~~~~~~~~~~----------------------   79 (297)
T 2ojh_A           34 MRVVWQTPE-LFEAPNWSPDG----------KYLLLNS-EGLLYRLSLAGDPSPEKVD----------------------   79 (297)
T ss_dssp             EEEEEEESS-CCEEEEECTTS----------SEEEEEE-TTEEEEEESSSCCSCEECC----------------------
T ss_pred             eeeeccCCc-ceEeeEECCCC----------CEEEEEc-CCeEEEEeCCCCCCceEec----------------------
Confidence            334566777 55599999999          7888876 78999999998 7655432                      


Q ss_pred             cccccCC-cCccceEEEEccCCCCCEEEEEe--CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363          171 SMLKCGG-TQSIPLTMEWSTSPPHDYLLAGC--HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA  247 (568)
Q Consensus       171 ~~~~~~h-~~~V~~~v~~s~~~~g~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~  247 (568)
                          .+| ...+ .+++|+  |++.+|++++  .++.+.||.+....     .....+..+. .+..++|+|++      
T Consensus        80 ----~~~~~~~~-~~~~~s--pdg~~l~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~-~~~~~~~spdg------  140 (297)
T 2ojh_A           80 ----TGFATICN-NDHGIS--PDGALYAISDKVEFGKSAIYLLPSTG-----GTPRLMTKNL-PSYWHGWSPDG------  140 (297)
T ss_dssp             ----CTTCCCBC-SCCEEC--TTSSEEEEEECTTTSSCEEEEEETTC-----CCCEECCSSS-SEEEEEECTTS------
T ss_pred             ----cccccccc-cceEEC--CCCCEEEEEEeCCCCcceEEEEECCC-----CceEEeecCC-CccceEECCCC------
Confidence                233 3556 889999  8999999999  44566666664321     2234443333 48999999998      


Q ss_pred             cEEE-EEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCcc
Q 008363          248 NVIL-TAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTK  324 (568)
Q Consensus       248 ~~la-s~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~  324 (568)
                      ++|+ +++.++ ++||++.........+..+...+.+++|+|++++|++++ .++.++||+++.       .+       
T Consensus       141 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~-------~~-------  206 (297)
T 2ojh_A          141 KSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV-------DG-------  206 (297)
T ss_dssp             SEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET-------TS-------
T ss_pred             CEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECC-------CC-------
Confidence            6665 777777 999987543345566677888899999999999888876 489999999853       12       


Q ss_pred             ccceEEEecCCCCEEEEEEecCCCEEEEEeCC-----------CeEEEEEcCCCeeeccCCC-CCcceeeeecccCCCCc
Q 008363          325 QQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD-----------GTVHRFQLTAKAVEKDHSR-NRPMHFLCGSVTEDESA  392 (568)
Q Consensus       325 ~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D-----------g~v~iwd~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~  392 (568)
                       ..+..+..|...+.+++|+|++++|++++.+           +.|++||+.++........ .......+.++++++..
T Consensus       207 -~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  285 (297)
T 2ojh_A          207 -SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDE  285 (297)
T ss_dssp             -SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSE
T ss_pred             -CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCE
Confidence             2235667788889999999999999988876           5699999987654322110 01112334567888887


Q ss_pred             eEEccc
Q 008363          393 ITVNTP  398 (568)
Q Consensus       393 i~~~~~  398 (568)
                      |.+.+.
T Consensus       286 l~~~~~  291 (297)
T 2ojh_A          286 FAYVRY  291 (297)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            766543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.83  E-value=9.8e-20  Score=190.27  Aligned_cols=216  Identities=13%  Similarity=0.100  Sum_probs=153.1

Q ss_pred             eEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccce
Q 008363          104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPL  183 (568)
Q Consensus       104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~  183 (568)
                      ..+++++++          ++|++++.|| |+||+.........       .......+.....    .....|...| .
T Consensus        40 n~lavs~~~----------~~l~~~~~dg-v~v~~~~~~~~~~~-------~~~~~~~~~~~~~----~~~~~~~~~v-~   96 (434)
T 2oit_A           40 SLLAVSNKY----------GLVFAGGASG-LQIFPTKNLLIQNK-------PGDDPNKIVDKVQ----GLLVPMKFPI-H   96 (434)
T ss_dssp             BCEEEETTT----------TEEEEEETTE-EEEEEHHHHCCCCC-------TTCCTTCEEECCC----CEEECCSSCE-E
T ss_pred             cEEEEecCC----------CEEEEECCCE-EEEEEchHhhhhcc-------cccCcccccccCc----cccccCCCcc-c
Confidence            479999998          7999999988 99988643110000       0000000110000    0013456678 9


Q ss_pred             EEEEccCCCCCEEE----EEeCCCeEEEEEccCCC-----CCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363          184 TMEWSTSPPHDYLL----AGCHDGTVALWKFVASD-----SSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG  254 (568)
Q Consensus       184 ~v~~s~~~~g~~l~----sgs~Dg~I~iwd~~~~~-----~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s  254 (568)
                      +++|+  ++|.+|+    +|+.|++|+|||+.+..     .......+..+.+|...|.+|+|+|+.     +.+|++++
T Consensus        97 ~l~~s--pdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~-----~~~las~s  169 (434)
T 2oit_A           97 HLALS--CDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTV-----PSMVAVCL  169 (434)
T ss_dssp             EEEEC--TTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSC-----TTEEEEEE
T ss_pred             EEEEc--CCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCC-----CCEEEEEE
Confidence            99999  8899999    78899999999987431     000112345667899999999999983     28999999


Q ss_pred             CCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec
Q 008363          255 HGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC  333 (568)
Q Consensus       255 ~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~  333 (568)
                      .|+ |++||+++. ..+....+|...|++++|+|+|.+|++|+.||+|++||++.         +.        ...+..
T Consensus       170 ~Dg~v~iwD~~~~-~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~---------~~--------~~~~~~  231 (434)
T 2oit_A          170 ADGSIAVLQVTET-VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL---------QE--------KKVIPC  231 (434)
T ss_dssp             TTSCEEEEEESSS-EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC---------CE--------EEEECC
T ss_pred             CCCeEEEEEcCCC-cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC---------cc--------cccccC
Confidence            999 999999987 55555667888999999999999999999999999999951         11        123322


Q ss_pred             -------CCCCEEEEEEecCCCEEEE-EeCCC------eEEEEEcCCC
Q 008363          334 -------SSFAIWSVQVSRLTGMVAY-CSADG------TVHRFQLTAK  367 (568)
Q Consensus       334 -------h~~~V~~l~~sp~~~~l~s-~s~Dg------~v~iwd~~~~  367 (568)
                             |...|.+++|++++.++++ .+.||      .+++|++...
T Consensus       232 ~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          232 PPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence                   3348999999998877654 34453      3899999643

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.83  E-value=1.3e-18  Score=180.76  Aligned_cols=204  Identities=12%  Similarity=0.082  Sum_probs=158.4

Q ss_pred             EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCC---cEEEEECCCCceeeEEeccCCccCCCCceEEEeecce
Q 008363           93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNG---SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFR  169 (568)
Q Consensus        93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg---~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~  169 (568)
                      ..+.+|.+ .+.+++|+|++          +.||+++.++   .|++||+.+++... +                     
T Consensus       172 ~~l~~~~~-~v~~~~~Spdg----------~~la~~s~~~~~~~i~~~d~~tg~~~~-l---------------------  218 (415)
T 2hqs_A          172 FVVHRSPQ-PLMSPAWSPDG----------SKLAYVTFESGRSALVIQTLANGAVRQ-V---------------------  218 (415)
T ss_dssp             EEEEEESS-CEEEEEECTTS----------SEEEEEECTTSSCEEEEEETTTCCEEE-E---------------------
T ss_pred             EEEeCCCC-cceeeEEcCCC----------CEEEEEEecCCCcEEEEEECCCCcEEE-e---------------------
Confidence            34456777 55599999999          7999999885   99999999877653 3                     


Q ss_pred             ecccccCCcCccceEEEEccCCCCCEEE-EEeCCCe--EEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCC
Q 008363          170 CSMLKCGGTQSIPLTMEWSTSPPHDYLL-AGCHDGT--VALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDS  246 (568)
Q Consensus       170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~-sgs~Dg~--I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~  246 (568)
                           ..|...+ .+++|+  |+|++|+ +++.||.  |.+||+.++      .. ..+..|...+.+++|+|++     
T Consensus       219 -----~~~~~~~-~~~~~s--pdg~~la~~~~~~g~~~i~~~d~~~~------~~-~~l~~~~~~~~~~~~spdg-----  278 (415)
T 2hqs_A          219 -----ASFPRHN-GAPAFS--PDGSKLAFALSKTGSLNLYVMDLASG------QI-RQVTDGRSNNTEPTWFPDS-----  278 (415)
T ss_dssp             -----ECCSSCE-EEEEEC--TTSSEEEEEECTTSSCEEEEEETTTC------CE-EECCCCSSCEEEEEECTTS-----
T ss_pred             -----ecCCCcc-cCEEEc--CCCCEEEEEEecCCCceEEEEECCCC------CE-EeCcCCCCcccceEECCCC-----
Confidence                 4566677 999999  8999887 6666665  999998865      33 5677888899999999999     


Q ss_pred             CcEEEEEcC-CC---EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEccccccCCCCCCCC
Q 008363          247 ANVILTAGH-GG---LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDD---GAMRIVSLLKAAYDVPATGKP  319 (568)
Q Consensus       247 ~~~las~s~-d~---v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d---g~I~lwd~~~~~~~~~~~g~~  319 (568)
                       ++|++++. ++   |.+||+.++ . ...+..+...+.+++|+|+|++|++++.+   ..|++||+..        ++.
T Consensus       279 -~~l~~~s~~~g~~~i~~~d~~~~-~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~--------~~~  347 (415)
T 2hqs_A          279 -QNLAFTSDQAGRPQVYKVNINGG-A-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT--------GGV  347 (415)
T ss_dssp             -SEEEEEECTTSSCEEEEEETTSS-C-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT--------CCE
T ss_pred             -CEEEEEECCCCCcEEEEEECCCC-C-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC--------CCE
Confidence             77777765 43   777788865 2 33455567788999999999999988764   5899999943        332


Q ss_pred             ccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCC---eEEEEEcCCCeee
Q 008363          320 FAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADG---TVHRFQLTAKAVE  370 (568)
Q Consensus       320 ~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg---~v~iwd~~~~~~~  370 (568)
                               ..+..|. .+.+++|+|+|++|++++.|+   .|++||+..+...
T Consensus       348 ---------~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~  391 (415)
T 2hqs_A          348 ---------QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA  391 (415)
T ss_dssp             ---------EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE
T ss_pred             ---------EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEE
Confidence                     3445554 889999999999999998887   7999999765443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.76  E-value=3.2e-17  Score=183.16  Aligned_cols=251  Identities=13%  Similarity=0.103  Sum_probs=165.1

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeC-CC-----cEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLG-NG-----SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC  175 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~-dg-----~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~  175 (568)
                      .+.+++|+|+|          ++|++++. |+     .|++||+.+++....+..+....  ....+.............
T Consensus        38 ~~~~~~~SpdG----------~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  105 (741)
T 2ecf_A           38 TLMKPKVAPDG----------SRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLP--GTETLSDEEKARRERQRI  105 (741)
T ss_dssp             CCEEEEECTTS----------SEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------
T ss_pred             CCCCceEecCC----------CEEEEEeccCCCCcccEEEEEECCCCceeEccchhhccc--ccccccchhhhhhhhhhh
Confidence            45699999999          89999998 88     89999999987766553321100  000000000000000000


Q ss_pred             CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363          176 GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH  255 (568)
Q Consensus       176 ~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~  255 (568)
                      .....+ .+++|+  |+|++|++++. +.|.+||+.++..    .....+..|...+..++|+|+|      ++||.++.
T Consensus       106 ~~~~~v-~~~~~S--pDg~~l~~~~~-~~i~~~d~~~~~~----~~~~~l~~~~~~~~~~~~SPDG------~~la~~~~  171 (741)
T 2ecf_A          106 AAMTGI-VDYQWS--PDAQRLLFPLG-GELYLYDLKQEGK----AAVRQLTHGEGFATDAKLSPKG------GFVSFIRG  171 (741)
T ss_dssp             -CCEES-CCCEEC--TTSSEEEEEET-TEEEEEESSSCST----TSCCBCCCSSSCEEEEEECTTS------SEEEEEET
T ss_pred             ccccCc-ceeEEC--CCCCEEEEEeC-CcEEEEECCCCCc----ceEEEcccCCcccccccCCCCC------CEEEEEeC
Confidence            011336 789999  99999999986 9999999986510    0334456778889999999999      89999886


Q ss_pred             CCEEEEECCCCCcceeeeCCCCCC----------------eEEEEEcCCCCEEEEEeCCC--------------------
Q 008363          256 GGLKFWDIRDPFRPLWDIHPAPKF----------------IYGLDWLPDPGCVILSFDDG--------------------  299 (568)
Q Consensus       256 d~v~lwD~~~~~~~~~~~~~h~~~----------------i~~l~~sp~~~~l~s~~~dg--------------------  299 (568)
                      +.|++||+.++ ........+...                +..++|+|||++|++++.|+                    
T Consensus       172 ~~i~~~d~~~g-~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~  250 (741)
T 2ecf_A          172 RNLWVIDLASG-RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIE  250 (741)
T ss_dssp             TEEEEEETTTT-EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEE
T ss_pred             CcEEEEecCCC-CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceE
Confidence            66999999876 444333333332                47799999999999987765                    


Q ss_pred             -------------cEEEEEccccccCCCCC-CCCccCccccceEEE--ecCCCCEEEEEEecCCCEEEEEeC-----CCe
Q 008363          300 -------------AMRIVSLLKAAYDVPAT-GKPFAGTKQQGLHLV--NCSSFAIWSVQVSRLTGMVAYCSA-----DGT  358 (568)
Q Consensus       300 -------------~I~lwd~~~~~~~~~~~-g~~~~~~~~~~l~~~--~~h~~~V~~l~~sp~~~~l~s~s~-----Dg~  358 (568)
                                   .|++||+.        + ++..        ...  ..|...+..++| |+|++|++++.     +..
T Consensus       251 ~~~~~~g~~~~~~~l~~~d~~--------~~~~~~--------~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~  313 (741)
T 2ecf_A          251 QRYPAAGDANVQVKLGVISPA--------EQAQTQ--------WIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLD  313 (741)
T ss_dssp             EECCBTTSCCCEEEEEEECSS--------TTCCCE--------EECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEE
T ss_pred             eecCCCCCCCCeeEEEEEECC--------CCCceE--------EecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEE
Confidence                         78888873        3 3321        111  147788999999 99999987764     678


Q ss_pred             EEEEEcCCCeeeccCCCCCcc---eeeeecccCCCCceEEc
Q 008363          359 VHRFQLTAKAVEKDHSRNRPM---HFLCGSVTEDESAITVN  396 (568)
Q Consensus       359 v~iwd~~~~~~~~~~~~~~~~---~~~~~s~~~~~~~i~~~  396 (568)
                      |++||+.++............   ......+++++..+.+.
T Consensus       314 i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~  354 (741)
T 2ecf_A          314 LVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSS  354 (741)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEE
T ss_pred             EEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEe
Confidence            999999887654432211111   12244677888754443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.76  E-value=5.7e-18  Score=188.60  Aligned_cols=227  Identities=13%  Similarity=0.147  Sum_probs=159.9

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcC---
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ---  179 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~---  179 (568)
                      ..+++|+|++          .++++ +.||+|++||+.+++....+                          .+|..   
T Consensus        19 ~~~~~~spdg----------~~~~~-~~dg~i~~~d~~~g~~~~~~--------------------------~~~~~~~~   61 (723)
T 1xfd_A           19 DPEAKWISDT----------EFIYR-EQKGTVRLWNVETNTSTVLI--------------------------EGKKIESL   61 (723)
T ss_dssp             CCCCCBSSSS----------CBCCC-CSSSCEEEBCGGGCCCEEEE--------------------------CTTTTTTT
T ss_pred             ccccEEcCCC----------cEEEE-eCCCCEEEEECCCCcEEEEe--------------------------cccccccc
Confidence            3489999999          66666 78999999999998776554                          33332   


Q ss_pred             ccceEEEEccCCCCCEEEEEeCC---------CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363          180 SIPLTMEWSTSPPHDYLLAGCHD---------GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI  250 (568)
Q Consensus       180 ~V~~~v~~s~~~~g~~l~sgs~D---------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l  250 (568)
                      .| .+++|+  |||++|++++.+         +.|.+||+.++..    ..+....+|...+..++|+|+|      +.|
T Consensus        62 ~v-~~~~~S--pDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~~~~SPdG------~~l  128 (723)
T 1xfd_A           62 RA-IRYEIS--PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP----QSLDPPEVSNAKLQYAGWGPKG------QQL  128 (723)
T ss_dssp             TC-SEEEEC--TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC----EECCCTTCCSCCCSBCCBCSST------TCE
T ss_pred             cc-ceEEEC--CCCCEEEEEecCccceeecceeeEEEEECCCCce----EeccCCccccccccccEECCCC------CEE
Confidence            47 899999  899999999875         7888999987622    2233333455568999999999      899


Q ss_pred             EEEcCCCEEEEECCCCCcceeeeCCCCCCe------------------EEEEEcCCCCEEEEEeCCC-------------
Q 008363          251 LTAGHGGLKFWDIRDPFRPLWDIHPAPKFI------------------YGLDWLPDPGCVILSFDDG-------------  299 (568)
Q Consensus       251 as~s~d~v~lwD~~~~~~~~~~~~~h~~~i------------------~~l~~sp~~~~l~s~~~dg-------------  299 (568)
                      |.++.+.|++||+.++ ........+...+                  .+++|+|||++|++++.|+             
T Consensus       129 a~~~~~~i~~~~~~~g-~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~  207 (723)
T 1xfd_A          129 IFIFENNIYYCAHVGK-QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG  207 (723)
T ss_dssp             EEEETTEEEEESSSSS-CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS
T ss_pred             EEEECCeEEEEECCCC-ceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC
Confidence            9988755999999876 4444444333323                  7899999999999987543             


Q ss_pred             ---------------------cEEEEEccccccCCCCCCCCccCccccceEEEec------CCCCEEEEEEecCCCEEEE
Q 008363          300 ---------------------AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC------SSFAIWSVQVSRLTGMVAY  352 (568)
Q Consensus       300 ---------------------~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~------h~~~V~~l~~sp~~~~l~s  352 (568)
                                           .|++||+..        ++..        ..+..      +...+..++|+|+|++|++
T Consensus       208 ~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~--------~~~~--------~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~  271 (723)
T 1xfd_A          208 SIYPTVKPYHYPKAGSENPSISLHVIGLNG--------PTHD--------LEMMPPDDPRMREYYITMVKWATSTKVAVT  271 (723)
T ss_dssp             SSSCCCEEEECCBTTSCCCEEEEEEEESSS--------SCCC--------EECCCCCCGGGSSEEEEEEEESSSSEEEEE
T ss_pred             cCCCcceeccCCCCCCCCCeeEEEEEECCC--------Ccee--------EEeeCCccCCCccceeEEEEEeCCCeEEEE
Confidence                                 688888743        3221        23333      3567899999999998877


Q ss_pred             EeC----CCeEEEEEcCCCeeeccCCCCCccee----eeecccCCCCceEEc
Q 008363          353 CSA----DGTVHRFQLTAKAVEKDHSRNRPMHF----LCGSVTEDESAITVN  396 (568)
Q Consensus       353 ~s~----Dg~v~iwd~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~i~~~  396 (568)
                      .+.    +..|++||+.++..............    ....+++++..|.+.
T Consensus       272 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          272 WLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             EEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             EEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence            653    36799999988765432111100100    134677888876653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.76  E-value=2e-17  Score=172.76  Aligned_cols=163  Identities=15%  Similarity=0.194  Sum_probs=126.3

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEE----EEeCCCcEEEEECCCC--------ceeeEEeccCCccCCCCceEE
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLA----VLLGNGSLEVWEVPLL--------RTMKAIYLSSMKEGTDPRFVK  163 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~la----s~s~dg~V~iwd~~~~--------~~~~~l~~~~~~~~~~~~~v~  163 (568)
                      +.|.+ .+.+++|+|++          .+||    +|+.|+.|+|||+.++        +.+..                
T Consensus        89 ~~~~~-~v~~l~~spdg----------~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~----------------  141 (434)
T 2oit_A           89 VPMKF-PIHHLALSCDN----------LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAY----------------  141 (434)
T ss_dssp             ECCSS-CEEEEEECTTS----------CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEE----------------
T ss_pred             ccCCC-cccEEEEcCCC----------CEEEEEEeccCCCceEEEEEccccccCCcCCcceeee----------------
Confidence            34555 56699999999          7888    7888999999998763        11111                


Q ss_pred             EeecceecccccCCcCccceEEEEccCCC-CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCC
Q 008363          164 LEPVFRCSMLKCGGTQSIPLTMEWSTSPP-HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAES  242 (568)
Q Consensus       164 ~~~~~~~~~~~~~h~~~V~~~v~~s~~~~-g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~  242 (568)
                             .....+|...| .+++|+  |+ +.+|++|+.||+|++||+++.      ..+....+|...|.+++|+|++ 
T Consensus       142 -------~~~~~~h~~~V-~~v~~~--p~~~~~las~s~Dg~v~iwD~~~~------~~~~~~~~~~~~v~~v~wspdg-  204 (434)
T 2oit_A          142 -------HKLLKDAGGMV-IDMKWN--PTVPSMVAVCLADGSIAVLQVTET------VKVCATLPSTVAVTSVCWSPKG-  204 (434)
T ss_dssp             -------EECCCSGGGSE-EEEEEC--SSCTTEEEEEETTSCEEEEEESSS------EEEEEEECGGGCEEEEEECTTS-
T ss_pred             -------eeccCCCCCce-EEEEEC--CCCCCEEEEEECCCeEEEEEcCCC------cceeeccCCCCceeEEEEcCCC-
Confidence                   11226799999 999999  55 689999999999999999866      5556667899999999999999 


Q ss_pred             CCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCC-------CCCCeEEEEEcCCCCEEEEE-eCCCc------EEEEEcc
Q 008363          243 DSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHP-------APKFIYGLDWLPDPGCVILS-FDDGA------MRIVSLL  307 (568)
Q Consensus       243 ~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~-------h~~~i~~l~~sp~~~~l~s~-~~dg~------I~lwd~~  307 (568)
                           ++|++|+.|+ |++||++ . .....+..       |...|.+++|++++.++++. +.||.      +++|+++
T Consensus       205 -----~~lasgs~dg~v~iwd~~-~-~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~  277 (434)
T 2oit_A          205 -----KQLAVGKQNGTVVQYLPT-L-QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLP  277 (434)
T ss_dssp             -----SCEEEEETTSCEEEECTT-C-CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECC
T ss_pred             -----CEEEEEcCCCcEEEEccC-C-cccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEec
Confidence                 8999999999 9999998 3 33333332       23378999999988877654 34433      8999997


Q ss_pred             cc
Q 008363          308 KA  309 (568)
Q Consensus       308 ~~  309 (568)
                      +.
T Consensus       278 ~~  279 (434)
T 2oit_A          278 KK  279 (434)
T ss_dssp             CT
T ss_pred             cC
Confidence            63

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.75  E-value=7.3e-16  Score=154.47  Aligned_cols=239  Identities=7%  Similarity=0.018  Sum_probs=155.1

Q ss_pred             EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCC-CcEEEEECC--CCcee--eEEeccCCccCCCCceEEEeecc
Q 008363           94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGN-GSLEVWEVP--LLRTM--KAIYLSSMKEGTDPRFVKLEPVF  168 (568)
Q Consensus        94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~d-g~V~iwd~~--~~~~~--~~l~~~~~~~~~~~~~v~~~~~~  168 (568)
                      ....|...+ ..++|+|++          ++|++++.+ +.|.+|++.  ++...  ..+                    
T Consensus        32 ~~~~~~~~~-~~~~~spdg----------~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------------------   80 (343)
T 1ri6_A           32 QVVDVPGQV-QPMVVSPDK----------RYLYVGVRPEFRVLAYRIAPDDGALTFAAES--------------------   80 (343)
T ss_dssp             EEEECSSCC-CCEEECTTS----------SEEEEEETTTTEEEEEEECTTTCCEEEEEEE--------------------
T ss_pred             eeEecCCCC-ceEEECCCC----------CEEEEeecCCCeEEEEEecCCCCceeecccc--------------------
Confidence            335566644 489999999          778888876 999999998  44322  111                    


Q ss_pred             eecccccCCcCccceEEEEccCCCCCEEEEEeC-CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363          169 RCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH-DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA  247 (568)
Q Consensus       169 ~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~  247 (568)
                            ..+. .+ ..++|+  |+|++|++++. ++.|.+||+..+.   ....+..+.. ...+.+++|+|++      
T Consensus        81 ------~~~~-~~-~~~~~s--~dg~~l~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~-~~~~~~~~~s~dg------  140 (343)
T 1ri6_A           81 ------ALPG-SL-THISTD--HQGQFVFVGSYNAGNVSVTRLEDGL---PVGVVDVVEG-LDGCHSANISPDN------  140 (343)
T ss_dssp             ------ECSS-CC-SEEEEC--TTSSEEEEEETTTTEEEEEEEETTE---EEEEEEEECC-CTTBCCCEECTTS------
T ss_pred             ------ccCC-CC-cEEEEc--CCCCEEEEEecCCCeEEEEECCCCc---cccccccccC-CCCceEEEECCCC------
Confidence                  1122 44 889999  88987776665 8999999995220   1144445544 3458999999998      


Q ss_pred             cEEEEEc-CCC-EEEEECCCCCcce--e--eeC-CCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCC
Q 008363          248 NVILTAG-HGG-LKFWDIRDPFRPL--W--DIH-PAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKP  319 (568)
Q Consensus       248 ~~las~s-~d~-v~lwD~~~~~~~~--~--~~~-~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~  319 (568)
                      ++|++++ .++ |.+||+.+.....  .  .+. .....+..++|+|++++|++++ .++.|++||+...      +|+.
T Consensus       141 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~------~g~~  214 (343)
T 1ri6_A          141 RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP------HGNI  214 (343)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCT------TSCC
T ss_pred             CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCC------CCcE
Confidence            6666665 667 9999998732222  1  222 2345688999999999887665 6899999999531      2322


Q ss_pred             ccCccccceEEEe----cC--CCCEEEEEEecCCCEEEE-EeCCCeEEEEEcC--CCeee--ccCCCCCcceeeeecccC
Q 008363          320 FAGTKQQGLHLVN----CS--SFAIWSVQVSRLTGMVAY-CSADGTVHRFQLT--AKAVE--KDHSRNRPMHFLCGSVTE  388 (568)
Q Consensus       320 ~~~~~~~~l~~~~----~h--~~~V~~l~~sp~~~~l~s-~s~Dg~v~iwd~~--~~~~~--~~~~~~~~~~~~~~s~~~  388 (568)
                            ..+..+.    ++  ...+..++|+|++++|++ +..|+.|.+|++.  ++...  ........  ....++++
T Consensus       215 ------~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~s~  286 (343)
T 1ri6_A          215 ------ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ--PRGFNVDH  286 (343)
T ss_dssp             ------EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS--CCCEEECT
T ss_pred             ------EEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc--cceEEECC
Confidence                  1112222    11  235678999999987774 4579999999997  32222  11111111  23346777


Q ss_pred             CCCceEEcc
Q 008363          389 DESAITVNT  397 (568)
Q Consensus       389 ~~~~i~~~~  397 (568)
                      ++..+.+..
T Consensus       287 dg~~l~~~~  295 (343)
T 1ri6_A          287 SGKYLIAAG  295 (343)
T ss_dssp             TSSEEEEEC
T ss_pred             CCCEEEEec
Confidence            777766654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.75  E-value=1.3e-15  Score=153.65  Aligned_cols=233  Identities=9%  Similarity=0.004  Sum_probs=164.9

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      ...++|+|++.         .++++...++.|.+||..+++.+..+..+.....                 .......+ 
T Consensus        91 ~~~~~~s~dg~---------~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~-  143 (353)
T 3vgz_A           91 PFGATINNTTQ---------TLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRT-----------------EEVRPLQP-  143 (353)
T ss_dssp             CCSEEEETTTT---------EEEEEETTTTEEEEEETTTCCEEEEEESCCCCCC-----------------SSCCCCEE-
T ss_pred             cceEEECCCCC---------EEEEEecCCCEEEEEeCCCCeeEEEEecCCCccc-----------------cccCCCCC-
Confidence            34899999993         2555556689999999999887766532210000                 00001113 


Q ss_pred             eEEEEccCCCCCEEEEEe--CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EE
Q 008363          183 LTMEWSTSPPHDYLLAGC--HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LK  259 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~  259 (568)
                      .+++|+  |+|+++++++  .++.|.+||+.+.      +.+..+..+...+.+++|+|++      .+|++++.++ |.
T Consensus       144 ~~~~~s--~dg~~l~~~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~~~~~~~s~dg------~~l~~~~~~~~i~  209 (353)
T 3vgz_A          144 RELVAD--DATNTVYISGIGKESVIWVVDGGNI------KLKTAIQNTGKMSTGLALDSEG------KRLYTTNADGELI  209 (353)
T ss_dssp             EEEEEE--TTTTEEEEEEESSSCEEEEEETTTT------EEEEEECCCCTTCCCCEEETTT------TEEEEECTTSEEE
T ss_pred             ceEEEC--CCCCEEEEEecCCCceEEEEcCCCC------ceEEEecCCCCccceEEECCCC------CEEEEEcCCCeEE
Confidence            788999  8888777766  4889999999866      7777776566678999999999      7888888888 99


Q ss_pred             EEECCCCCcceeeeC----CCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363          260 FWDIRDPFRPLWDIH----PAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS  334 (568)
Q Consensus       260 lwD~~~~~~~~~~~~----~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h  334 (568)
                      +||+.+. ..+..+.    ++...+..++|+|++++|++++. ++.|.+||+..        ++.+        ..+...
T Consensus       210 ~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~--------~~~~--------~~~~~~  272 (353)
T 3vgz_A          210 TIDTADN-KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN--------GNIL--------AKVAAP  272 (353)
T ss_dssp             EEETTTT-EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT--------CCEE--------EEEECS
T ss_pred             EEECCCC-eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC--------CcEE--------EEEEcC
Confidence            9999987 5554443    24556889999999998888765 59999999943        4432        344433


Q ss_pred             CCCEEEEEEecCCCEEEEEe-CCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363          335 SFAIWSVQVSRLTGMVAYCS-ADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNT  397 (568)
Q Consensus       335 ~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~  397 (568)
                      . + ..++|+|++++|++++ .++.|.+||+.+++..........+  .+.++++++..+.+..
T Consensus       273 ~-~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~  332 (353)
T 3vgz_A          273 E-S-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHP--NSLALSADGKTLYVSV  332 (353)
T ss_dssp             S-C-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEE--EEEEECTTSCEEEEEE
T ss_pred             C-C-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCC--CeEEEcCCCCEEEEEE
Confidence            2 2 5689999998665555 7999999999988776543333323  3446788888776643

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.74  E-value=1.4e-16  Score=155.63  Aligned_cols=210  Identities=11%  Similarity=0.071  Sum_probs=149.2

Q ss_pred             EEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEE
Q 008363          127 VLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVA  206 (568)
Q Consensus       127 s~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~  206 (568)
                      .++.|+.|++||+.+++....                           ..|...+ .+++|+  |+|.+|++++ ++.|.
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~~---------------------------~~~~~~v-~~~~~s--pdg~~l~~~~-~~~i~   65 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRVV---------------------------WQTPELF-EAPNWS--PDGKYLLLNS-EGLLY   65 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEEE---------------------------EEESSCC-EEEEEC--TTSSEEEEEE-TTEEE
T ss_pred             CCCcceeEEEEeCCCCceeee---------------------------ccCCcce-EeeEEC--CCCCEEEEEc-CCeEE
Confidence            446789999999998765532                           4566777 999999  8999999987 88999


Q ss_pred             EEEccC-CCCCCCCceeEEeeCC-CCCeeEEEEccCCCCCCCCcEEEEEcC--CC-EEEE--ECCCCCcceeeeCCCCCC
Q 008363          207 LWKFVA-SDSSIDSRPLLCFSAD-TLPIRAVSWAPAESDSDSANVILTAGH--GG-LKFW--DIRDPFRPLWDIHPAPKF  279 (568)
Q Consensus       207 iwd~~~-~~~~~~~~~~~~~~~h-~~~V~~v~~~p~~~~~~~~~~las~s~--d~-v~lw--D~~~~~~~~~~~~~h~~~  279 (568)
                      +||+.+ +      .....+..| ...+.+++|+|++      .+|++++.  ++ +.||  |+.+.  ....+..+ ..
T Consensus        66 ~~d~~~~~------~~~~~~~~~~~~~~~~~~~spdg------~~l~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~-~~  130 (297)
T 2ojh_A           66 RLSLAGDP------SPEKVDTGFATICNNDHGISPDG------ALYAISDKVEFGKSAIYLLPSTGG--TPRLMTKN-LP  130 (297)
T ss_dssp             EEESSSCC------SCEECCCTTCCCBCSCCEECTTS------SEEEEEECTTTSSCEEEEEETTCC--CCEECCSS-SS
T ss_pred             EEeCCCCC------CceEeccccccccccceEECCCC------CEEEEEEeCCCCcceEEEEECCCC--ceEEeecC-CC
Confidence            999987 5      444555455 3678999999999      78888873  33 5555  54443  23344333 34


Q ss_pred             eEEEEEcCCCCEEE-EEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEe-CCC
Q 008363          280 IYGLDWLPDPGCVI-LSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCS-ADG  357 (568)
Q Consensus       280 i~~l~~sp~~~~l~-s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s-~Dg  357 (568)
                      +..++|+|++++|+ +++.++.++||+++..      ++.         ...+..|...+.+++|+|++.+|++++ .|+
T Consensus       131 ~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~------~~~---------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  195 (297)
T 2ojh_A          131 SYWHGWSPDGKSFTYCGIRDQVFDIYSMDID------SGV---------ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTG  195 (297)
T ss_dssp             EEEEEECTTSSEEEEEEEETTEEEEEEEETT------TCC---------EEECCCSSSCEEEEEECTTSSEEEEEECTTS
T ss_pred             ccceEECCCCCEEEEEECCCCceEEEEEECC------CCc---------ceEcccCCCccccceECCCCCEEEEEecCCC
Confidence            89999999999888 6677999999997431      122         245667888999999999999887766 599


Q ss_pred             eEEEEEcC-CCeeeccCCCCCcceeeeecccCCCCceEEccc
Q 008363          358 TVHRFQLT-AKAVEKDHSRNRPMHFLCGSVTEDESAITVNTP  398 (568)
Q Consensus       358 ~v~iwd~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~  398 (568)
                      .+.+|++. .+......... .....+..+++++..|+..+.
T Consensus       196 ~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~  236 (297)
T 2ojh_A          196 QMQIWRVRVDGSSVERITDS-AYGDWFPHPSPSGDKVVFVSY  236 (297)
T ss_dssp             SCEEEEEETTSSCEEECCCC-SEEEEEEEECTTSSEEEEEEE
T ss_pred             CccEEEECCCCCCcEEEecC-CcccCCeEECCCCCEEEEEEc
Confidence            99999885 22222221211 123445578888888776544

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.74  E-value=7.9e-16  Score=165.15  Aligned_cols=228  Identities=13%  Similarity=0.080  Sum_probs=164.5

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEEC--CCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCc
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEV--PLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQS  180 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~--~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~  180 (568)
                      ++.++|+|++          ++|++++.|++|++||+  .+++++..+                          . +...
T Consensus       181 ~~~v~~spdg----------~~l~v~~~d~~V~v~D~~~~t~~~~~~i--------------------------~-~g~~  223 (543)
T 1nir_A          181 VHISRMSASG----------RYLLVIGRDARIDMIDLWAKEPTKVAEI--------------------------K-IGIE  223 (543)
T ss_dssp             EEEEEECTTS----------CEEEEEETTSEEEEEETTSSSCEEEEEE--------------------------E-CCSE
T ss_pred             cceEEECCCC----------CEEEEECCCCeEEEEECcCCCCcEEEEE--------------------------e-cCCC
Confidence            6689999999          89999999999999999  777777665                          2 1223


Q ss_pred             cceEEEEccCC----CCCEEEEEeC-CCeEEEEEccCCCCCCCCceeEEeeCC-----------CCCeeEEEEccCCCCC
Q 008363          181 IPLTMEWSTSP----PHDYLLAGCH-DGTVALWKFVASDSSIDSRPLLCFSAD-----------TLPIRAVSWAPAESDS  244 (568)
Q Consensus       181 V~~~v~~s~~~----~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h-----------~~~V~~v~~~p~~~~~  244 (568)
                      . ..++|+  |    +|++|++++. +++|.|||..+.      +++..+..+           ...+..+.++|++   
T Consensus       224 p-~~va~s--p~~~~dg~~l~v~~~~~~~v~v~D~~t~------~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~---  291 (543)
T 1nir_A          224 A-RSVESS--KFKGYEDRYTIAGAYWPPQFAIMDGETL------EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH---  291 (543)
T ss_dssp             E-EEEEEC--CSTTCTTTEEEEEEEESSEEEEEETTTC------CEEEEEECCEECSSSCCEESCCCEEEEEECSSS---
T ss_pred             c-ceEEeC--CCcCCCCCEEEEEEccCCeEEEEecccc------ccceeecccCcccCccccccCCceEEEEECCCC---
Confidence            3 889998  7    8999998884 899999998866      677766542           2378999999987   


Q ss_pred             CCCcEEEEEcCCC-EEEEECCCCCcce-eeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCcc
Q 008363          245 DSANVILTAGHGG-LKFWDIRDPFRPL-WDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFA  321 (568)
Q Consensus       245 ~~~~~las~s~d~-v~lwD~~~~~~~~-~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~  321 (568)
                        +.++++...++ |.+||+.+..... ..+ .+...+..+.|+|+|++|++++ .+++|.+||+.        +|+++ 
T Consensus       292 --~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~--------tg~l~-  359 (543)
T 1nir_A          292 --PEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSK--------DRRLS-  359 (543)
T ss_dssp             --SEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETT--------TTEEE-
T ss_pred             --CEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECC--------CCeEE-
Confidence              36778888888 9999998763222 233 3556678999999999887765 48999999994        35443 


Q ss_pred             CccccceEEEec----CCCCEEEEEEecC-CCEEEEEe-CCCeEEEEEcCC-------CeeeccCCCCCcceeeeecccC
Q 008363          322 GTKQQGLHLVNC----SSFAIWSVQVSRL-TGMVAYCS-ADGTVHRFQLTA-------KAVEKDHSRNRPMHFLCGSVTE  388 (568)
Q Consensus       322 ~~~~~~l~~~~~----h~~~V~~l~~sp~-~~~l~s~s-~Dg~v~iwd~~~-------~~~~~~~~~~~~~~~~~~s~~~  388 (568)
                             ..+..    |.+....+ ++|+ +.+++++. .|++|.+||+.+       .++.+....+. ...+...+++
T Consensus       360 -------~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g-~~~~~v~~~p  430 (543)
T 1nir_A          360 -------ALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG-GGSLFIKTHP  430 (543)
T ss_dssp             -------EEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC-SCCCCEECCT
T ss_pred             -------EeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC-CCceEEEcCC
Confidence                   44543    55444443 5787 56777775 689999999987       44433322221 1122335788


Q ss_pred             CCCceEEcccCC
Q 008363          389 DESAITVNTPLD  400 (568)
Q Consensus       389 ~~~~i~~~~~~~  400 (568)
                      ++..+.+.+++.
T Consensus       431 dg~~l~v~~~~~  442 (543)
T 1nir_A          431 KSSHLYVDTTFN  442 (543)
T ss_dssp             TCCEEEECCTTC
T ss_pred             CCCcEEEecCCC
Confidence            888888876543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.73  E-value=1.9e-15  Score=152.31  Aligned_cols=222  Identities=11%  Similarity=0.039  Sum_probs=161.6

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeC-------CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLG-------NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC  175 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~-------dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~  175 (568)
                      +..++|+|++          ++|++++.       ++.|.+||..+++.+..+..                         
T Consensus        43 ~~~~~~s~dg----------~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-------------------------   87 (353)
T 3vgz_A           43 AYEMAYSQQE----------NALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-------------------------   87 (353)
T ss_dssp             EEEEEEETTT----------TEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-------------------------
T ss_pred             ccceEECCCC----------CEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-------------------------
Confidence            3499999999          67777764       56899999999887766411                         


Q ss_pred             CCcCccceEEEEccCCCCCEE-EEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCC---------eeEEEEccCCCCCC
Q 008363          176 GGTQSIPLTMEWSTSPPHDYL-LAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLP---------IRAVSWAPAESDSD  245 (568)
Q Consensus       176 ~h~~~V~~~v~~s~~~~g~~l-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~---------V~~v~~~p~~~~~~  245 (568)
                        ...+ ..++|+  ++|+++ +++..++.|.+||+.++      +.+..+..+...         +.+++|+|++    
T Consensus        88 --~~~~-~~~~~s--~dg~~l~v~~~~~~~v~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg----  152 (353)
T 3vgz_A           88 --DLKP-FGATIN--NTTQTLWFGNTVNSAVTAIDAKTG------EVKGRLVLDDRKRTEEVRPLQPRELVADDAT----  152 (353)
T ss_dssp             --SSCC-CSEEEE--TTTTEEEEEETTTTEEEEEETTTC------CEEEEEESCCCCCCSSCCCCEEEEEEEETTT----
T ss_pred             --CCCc-ceEEEC--CCCCEEEEEecCCCEEEEEeCCCC------eeEEEEecCCCccccccCCCCCceEEECCCC----
Confidence              1123 778888  888855 45555899999999876      666666554432         7889999998    


Q ss_pred             CCcEEEEEc--CCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccC
Q 008363          246 SANVILTAG--HGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAG  322 (568)
Q Consensus       246 ~~~~las~s--~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~  322 (568)
                        ++++.++  .++ |.+||+.+. ..+..+..+...+..++|+|++++|++++.++.|.+||+..        ++.+  
T Consensus       153 --~~l~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~--------~~~~--  219 (353)
T 3vgz_A          153 --NTVYISGIGKESVIWVVDGGNI-KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTAD--------NKIL--  219 (353)
T ss_dssp             --TEEEEEEESSSCEEEEEETTTT-EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTT--------TEEE--
T ss_pred             --CEEEEEecCCCceEEEEcCCCC-ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCC--------CeEE--
Confidence              5555554  466 999999977 66666664566688999999999999999999999999943        4332  


Q ss_pred             ccccceEEEe----cCCCCEEEEEEecCCCEEEEEeC-CCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEc
Q 008363          323 TKQQGLHLVN----CSSFAIWSVQVSRLTGMVAYCSA-DGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVN  396 (568)
Q Consensus       323 ~~~~~l~~~~----~h~~~V~~l~~sp~~~~l~s~s~-Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~  396 (568)
                            ..+.    ++...+.+++|+|++++|++++. ++.|.+||+.+++......... +  .+..+++++..+.+.
T Consensus       220 ------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~--~~~~~s~dg~~l~v~  289 (353)
T 3vgz_A          220 ------SRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE-S--LAVLFNPARNEAYVT  289 (353)
T ss_dssp             ------EEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-C--CCEEEETTTTEEEEE
T ss_pred             ------EEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-C--ceEEECCCCCEEEEE
Confidence                  3333    25567889999999987766665 5999999998877654432211 1  334677787766554

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.72  E-value=7.2e-16  Score=165.46  Aligned_cols=199  Identities=10%  Similarity=0.055  Sum_probs=153.9

Q ss_pred             EEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEE
Q 008363          107 KWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTME  186 (568)
Q Consensus       107 ~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~  186 (568)
                      .|+|++          .++++++.|++|.+||..+++++.++.                         .++.  + .+++
T Consensus       144 ~~~p~~----------~~~vs~~~d~~V~v~D~~t~~~~~~i~-------------------------~g~~--~-~~v~  185 (543)
T 1nir_A          144 DLDLPN----------LFSVTLRDAGQIALVDGDSKKIVKVID-------------------------TGYA--V-HISR  185 (543)
T ss_dssp             CCCGGG----------EEEEEEGGGTEEEEEETTTCCEEEEEE-------------------------CSTT--E-EEEE
T ss_pred             ccCCCC----------EEEEEEcCCCeEEEEECCCceEEEEEe-------------------------cCcc--c-ceEE
Confidence            378887          789999999999999999998887762                         1333  4 8899


Q ss_pred             EccCCCCCEEEEEeCCCeEEEEEc--cCCCCCCCCceeEEeeCCCCCeeEEEEcc----CCCCCCCCcEEEEEcC-CC-E
Q 008363          187 WSTSPPHDYLLAGCHDGTVALWKF--VASDSSIDSRPLLCFSADTLPIRAVSWAP----AESDSDSANVILTAGH-GG-L  258 (568)
Q Consensus       187 ~s~~~~g~~l~sgs~Dg~I~iwd~--~~~~~~~~~~~~~~~~~h~~~V~~v~~~p----~~~~~~~~~~las~s~-d~-v  258 (568)
                      |+  |+|++|++++.|++|.+||+  .+.      +++..+. +...+..++|+|    ++      +++++++. ++ |
T Consensus       186 ~s--pdg~~l~v~~~d~~V~v~D~~~~t~------~~~~~i~-~g~~p~~va~sp~~~~dg------~~l~v~~~~~~~v  250 (543)
T 1nir_A          186 MS--ASGRYLLVIGRDARIDMIDLWAKEP------TKVAEIK-IGIEARSVESSKFKGYED------RYTIAGAYWPPQF  250 (543)
T ss_dssp             EC--TTSCEEEEEETTSEEEEEETTSSSC------EEEEEEE-CCSEEEEEEECCSTTCTT------TEEEEEEEESSEE
T ss_pred             EC--CCCCEEEEECCCCeEEEEECcCCCC------cEEEEEe-cCCCcceEEeCCCcCCCC------CEEEEEEccCCeE
Confidence            98  89999999999999999999  544      6777776 455689999999    98      78888875 56 9


Q ss_pred             EEEECCCCCcceeeeCC----------CCC-CeEEEEEcCCCCEEEE-EeCCCcEEEEEccccccCCCCCCCCccCcccc
Q 008363          259 KFWDIRDPFRPLWDIHP----------APK-FIYGLDWLPDPGCVIL-SFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQ  326 (568)
Q Consensus       259 ~lwD~~~~~~~~~~~~~----------h~~-~i~~l~~sp~~~~l~s-~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~  326 (568)
                      .+||..+. .++..+..          |.. .+..+.++|++..+++ ...++.|.+||+..        ++.+     .
T Consensus       251 ~v~D~~t~-~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~--------~~~l-----~  316 (543)
T 1nir_A          251 AIMDGETL-EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD--------IDNL-----T  316 (543)
T ss_dssp             EEEETTTC-CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT--------SSSC-----E
T ss_pred             EEEecccc-ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC--------CCcc-----e
Confidence            99999877 66655543          223 6899999998776555 46689999999954        2221     1


Q ss_pred             ceEEEecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEEcCCCeeeccCC
Q 008363          327 GLHLVNCSSFAIWSVQVSRLTGMVAYCS-ADGTVHRFQLTAKAVEKDHS  374 (568)
Q Consensus       327 ~l~~~~~h~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~~~~~~~~~  374 (568)
                       +..+ .+...+..+.|+|++++|++++ .+++|.+||+.++++.....
T Consensus       317 -~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~  363 (543)
T 1nir_A          317 -VTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD  363 (543)
T ss_dssp             -EEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             -eEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec
Confidence             1233 3566678899999999776554 68999999999988766433

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.71  E-value=7e-15  Score=148.33  Aligned_cols=239  Identities=13%  Similarity=0.077  Sum_probs=153.2

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeC---CCcEEEEECCCCcee--eEEeccCCccCCCCceEEEeeccee
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLG---NGSLEVWEVPLLRTM--KAIYLSSMKEGTDPRFVKLEPVFRC  170 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~---dg~V~iwd~~~~~~~--~~l~~~~~~~~~~~~~v~~~~~~~~  170 (568)
                      ..+...+. .++|+|++          + |++++.   ++.|.+|++.++...  ..+                      
T Consensus        36 ~~~~~~p~-~~a~spdg----------~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~----------------------   81 (347)
T 3hfq_A           36 LAATQNPT-YLALSAKD----------C-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV----------------------   81 (347)
T ss_dssp             EEECSCCC-CEEECTTC----------E-EEEEEEETTEEEEEEEEEETTEEEEEEEE----------------------
T ss_pred             eeccCCcc-eEEEccCC----------e-EEEEEecCCCceEEEEEecCCcEEEeeee----------------------
Confidence            44444344 89999999          7 554443   689999999765432  111                      


Q ss_pred             cccccCCcCccceEEEEccCCCCCEEEEEe-CCCeEEEEEccCCCCCCCCceeEEeeC---------CCCCeeEEEEccC
Q 008363          171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGC-HDGTVALWKFVASDSSIDSRPLLCFSA---------DTLPIRAVSWAPA  240 (568)
Q Consensus       171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~---------h~~~V~~v~~~p~  240 (568)
                          ..+...+ ..++|+  |+|++|++++ .+++|.+|++....   ....+..+..         +...+.+++|+|+
T Consensus        82 ----~~~~~~p-~~~a~s--pdg~~l~~~~~~~~~v~v~~~~~~g---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spd  151 (347)
T 3hfq_A           82 ----VAPGTPP-AYVAVD--EARQLVYSANYHKGTAEVMKIAADG---ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPD  151 (347)
T ss_dssp             ----EEESCCC-SEEEEE--TTTTEEEEEETTTTEEEEEEECTTS---CEEEEEEEECCCCCSSTTCSSCCEEEEEECTT
T ss_pred             ----ecCCCCC-EEEEEC--CCCCEEEEEeCCCCEEEEEEeCCCC---CeeecceeecCCCCCCccccCCCceEEEECCC
Confidence                2234444 889999  8999888887 78999999996321   1133333322         1234889999999


Q ss_pred             CCCCCCCcEEEEEcCCC-EEEEECCCCCcc--eeeeCC-CCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCC
Q 008363          241 ESDSDSANVILTAGHGG-LKFWDIRDPFRP--LWDIHP-APKFIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPA  315 (568)
Q Consensus       241 ~~~~~~~~~las~s~d~-v~lwD~~~~~~~--~~~~~~-h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~  315 (568)
                      +      +++++...++ |.+||+......  +..+.. ....+..++|+|+|++|+++ ..++.|.+|++...      
T Consensus       152 g------~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~------  219 (347)
T 3hfq_A          152 N------RLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ------  219 (347)
T ss_dssp             S------CEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT------
T ss_pred             C------cEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC------
Confidence            9      6777777777 999999832221  222222 23357889999999977775 45899999998531      


Q ss_pred             CCCCccCccccceEEEecCC------CCEEEEEEecCCCEE-EEEeCCCeEEEEEcCCC-eee--ccCCC-CCcceeeee
Q 008363          316 TGKPFAGTKQQGLHLVNCSS------FAIWSVQVSRLTGMV-AYCSADGTVHRFQLTAK-AVE--KDHSR-NRPMHFLCG  384 (568)
Q Consensus       316 ~g~~~~~~~~~~l~~~~~h~------~~V~~l~~sp~~~~l-~s~s~Dg~v~iwd~~~~-~~~--~~~~~-~~~~~~~~~  384 (568)
                      +|+.      ..+..+....      ..+..++|+|+|++| ++...++.|.+|++... ...  ..... ...+  ...
T Consensus       220 ~g~~------~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~--~~~  291 (347)
T 3hfq_A          220 TGAF------TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFP--RDF  291 (347)
T ss_dssp             TTEE------EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCC--CEE
T ss_pred             CCce------EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCc--CeE
Confidence            2322      1222333222      358899999999977 55667899999999632 211  11111 1122  233


Q ss_pred             cccCCCCceEEccc
Q 008363          385 SVTEDESAITVNTP  398 (568)
Q Consensus       385 s~~~~~~~i~~~~~  398 (568)
                      ++++++..|.+...
T Consensus       292 ~~spdg~~l~v~~~  305 (347)
T 3hfq_A          292 DLDPTEAFVVVVNQ  305 (347)
T ss_dssp             EECTTSSEEEEEET
T ss_pred             EECCCCCEEEEEEc
Confidence            67888887766543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.71  E-value=3.9e-15  Score=150.20  Aligned_cols=225  Identities=9%  Similarity=0.065  Sum_probs=145.1

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEe-CCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLL-GNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s-~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      ..|...+. .++|+|++          ++|++++ .++.|.+|++........+..... .+..       +.      .
T Consensus        82 ~~~~~~p~-~~a~spdg----------~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~-------p~------~  136 (347)
T 3hfq_A           82 VAPGTPPA-YVAVDEAR----------QLVYSANYHKGTAEVMKIAADGALTLTDTVQH-SGHG-------PR------P  136 (347)
T ss_dssp             EEESCCCS-EEEEETTT----------TEEEEEETTTTEEEEEEECTTSCEEEEEEEEC-CCCC-------SS------T
T ss_pred             ecCCCCCE-EEEECCCC----------CEEEEEeCCCCEEEEEEeCCCCCeeecceeec-CCCC-------CC------c
Confidence            44555344 89999999          7788777 789999999964222211100000 0000       00      0


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEcc-CCCCCCCCceeEEeeCC-CCCeeEEEEccCCCCCCCCcEEEE
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFV-ASDSSIDSRPLLCFSAD-TLPIRAVSWAPAESDSDSANVILT  252 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~-~~~~~~~~~~~~~~~~h-~~~V~~v~~~p~~~~~~~~~~las  252 (568)
                      ..+...+ .+++|+  |+|++++++..++.|.+|++. .+.    ...+..+..+ ...+..++|+|++      ++++.
T Consensus       137 ~~~~~~~-~~~~~s--pdg~l~v~~~~~~~v~~~~~~~~g~----~~~~~~~~~~~g~~p~~~~~spdg------~~l~v  203 (347)
T 3hfq_A          137 EQDGSHI-HYTDLT--PDNRLAVIDLGSDKVYVYNVSDAGQ----LSEQSVLTMEAGFGPRHLVFSPDG------QYAFL  203 (347)
T ss_dssp             TCSSCCE-EEEEEC--TTSCEEEEETTTTEEEEEEECTTSC----EEEEEEEECCTTCCEEEEEECTTS------SEEEE
T ss_pred             cccCCCc-eEEEEC--CCCcEEEEeCCCCEEEEEEECCCCc----EEEeeeEEcCCCCCCceEEECCCC------CEEEE
Confidence            1122334 789999  888877777778999999998 331    1223333333 3367889999999      65554


Q ss_pred             -EcCCC-EEEEECCCCC-c--ceeeeCCCC------CCeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCCCCCCc
Q 008363          253 -AGHGG-LKFWDIRDPF-R--PLWDIHPAP------KFIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPATGKPF  320 (568)
Q Consensus       253 -~s~d~-v~lwD~~~~~-~--~~~~~~~h~------~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g~~~  320 (568)
                       ...++ |.+|++.... .  .+..+....      ..+..++|+|+|++|+++ ..++.|.+||+..       .|.. 
T Consensus       204 ~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~-------~g~~-  275 (347)
T 3hfq_A          204 AGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA-------DGHL-  275 (347)
T ss_dssp             EETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG-------GGCE-
T ss_pred             EeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC-------CCcE-
Confidence             55566 9999987521 1  122232222      347899999999988554 5689999999952       1211 


Q ss_pred             cCccccceEEEecCCCCEEEEEEecCCCEEEEEeCC-CeEEEEEc--CCCeeec
Q 008363          321 AGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD-GTVHRFQL--TAKAVEK  371 (568)
Q Consensus       321 ~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D-g~v~iwd~--~~~~~~~  371 (568)
                           ..+..+..+...+..++|+|++++|++++.+ +.|.+|++  .++.+..
T Consensus       276 -----~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          276 -----TLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             -----EEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             -----EEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence                 3345666666778999999999988888765 89999955  4555443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.70  E-value=9.6e-15  Score=146.03  Aligned_cols=230  Identities=12%  Similarity=0.115  Sum_probs=154.7

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEe-CCCcEEEEECCCCce-eeEEeccCCccCCCCceEEEeecceecccccCCcC
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLL-GNGSLEVWEVPLLRT-MKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ  179 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s-~dg~V~iwd~~~~~~-~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~  179 (568)
                      .. .++|+|++          ++|++++ .++.|.+||+.+++. ...+                          ..+..
T Consensus        42 ~~-~~~~s~dg----------~~l~~~~~~~~~i~~~d~~~~~~~~~~~--------------------------~~~~~   84 (331)
T 3u4y_A           42 FV-DTAITSDC----------SNVVVTSDFCQTLVQIETQLEPPKVVAI--------------------------QEGQS   84 (331)
T ss_dssp             EE-EEEECSSS----------CEEEEEESTTCEEEEEECSSSSCEEEEE--------------------------EECSS
T ss_pred             cc-eEEEcCCC----------CEEEEEeCCCCeEEEEECCCCceeEEec--------------------------ccCCC
Confidence            55 89999999          6555555 489999999998776 4443                          23333


Q ss_pred             ccceEEEEccCCCCCEEEEEeCCC---eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-
Q 008363          180 SIPLTMEWSTSPPHDYLLAGCHDG---TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-  255 (568)
Q Consensus       180 ~V~~~v~~s~~~~g~~l~sgs~Dg---~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-  255 (568)
                      .. .+++|+  |+|++|+++..++   .|.+||+.++      ..+..+.. ...+.+++|+|++.     .++++... 
T Consensus        85 ~~-~~~~~s--~dg~~l~~~~~~~~~~~i~v~d~~~~------~~~~~~~~-~~~~~~~~~spdg~-----~l~~~~~~~  149 (331)
T 3u4y_A           85 SM-ADVDIT--PDDQFAVTVTGLNHPFNMQSYSFLKN------KFISTIPI-PYDAVGIAISPNGN-----GLILIDRSS  149 (331)
T ss_dssp             CC-CCEEEC--TTSSEEEECCCSSSSCEEEEEETTTT------EEEEEEEC-CTTEEEEEECTTSS-----CEEEEEETT
T ss_pred             Cc-cceEEC--CCCCEEEEecCCCCcccEEEEECCCC------CeEEEEEC-CCCccceEECCCCC-----EEEEEecCC
Confidence            43 448998  8899998655553   8999999866      66666654 34579999999982     35555444 


Q ss_pred             CC-EEEEECCCCCcce---eeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363          256 GG-LKFWDIRDPFRPL---WDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL  330 (568)
Q Consensus       256 d~-v~lwD~~~~~~~~---~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~  330 (568)
                      +. |.+|++.......   .........+..++|+|+|++|++++ .++.|++||+..        ++..     +.+..
T Consensus       150 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~--------~~~~-----~~~~~  216 (331)
T 3u4y_A          150 ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN--------PENI-----TLLNA  216 (331)
T ss_dssp             TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS--------TTSC-----EEEEE
T ss_pred             CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC--------Cccc-----ceeee
Confidence            56 9999998543221   11113345579999999999777665 589999999943        4431     12345


Q ss_pred             EecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEEcCCCeeecc--CCCC----Cccee--eeecccCCCCceEEcc
Q 008363          331 VNCSSFAIWSVQVSRLTGMVAYCS-ADGTVHRFQLTAKAVEKD--HSRN----RPMHF--LCGSVTEDESAITVNT  397 (568)
Q Consensus       331 ~~~h~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~~~~~~~--~~~~----~~~~~--~~~s~~~~~~~i~~~~  397 (568)
                      +..+ ..+..++|+|+|++|++++ .++.|.+||+.++++...  ....    ..+..  ...++++++..+.+..
T Consensus       217 ~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~  291 (331)
T 3u4y_A          217 VGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISA  291 (331)
T ss_dssp             EECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEE
T ss_pred             ccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEec
Confidence            5543 5668899999999776554 578899999998876221  0110    11111  1236778887776543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.70  E-value=4e-15  Score=148.67  Aligned_cols=202  Identities=18%  Similarity=0.103  Sum_probs=145.2

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      +..++|+|++.         .+++++..++.|.+||+.+++.+..+....                     ...|...+ 
T Consensus        36 ~~~~~~s~dg~---------~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---------------------~~~~~~~~-   84 (337)
T 1pby_B           36 PMVPMVAPGGR---------IAYATVNKSESLVKIDLVTGETLGRIDLST---------------------PEERVKSL-   84 (337)
T ss_dssp             CCCEEECTTSS---------EEEEEETTTTEEEEEETTTCCEEEEEECCB---------------------TTEEEECT-
T ss_pred             ccceEEcCCCC---------EEEEEeCCCCeEEEEECCCCCeEeeEEcCC---------------------cccccccc-
Confidence            34899999993         344566668999999999987776542110                     00012244 


Q ss_pred             eEEEEccCCCCCEEEEEe------------CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363          183 LTMEWSTSPPHDYLLAGC------------HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI  250 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs------------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l  250 (568)
                      ..++|+  |+|++|++++            .++.|.+||+.+.      +.+..+.. ...+.+++|+|++      ++|
T Consensus        85 ~~~~~s--~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~------~~~~~~~~-~~~~~~~~~s~dg------~~l  149 (337)
T 1pby_B           85 FGAALS--PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL------SRRKAFEA-PRQITMLAWARDG------SKL  149 (337)
T ss_dssp             TCEEEC--TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT------EEEEEEEC-CSSCCCEEECTTS------SCE
T ss_pred             cceEEC--CCCCEEEEEecccccccccccccCceEEEEECCCC------cEEEEEeC-CCCcceeEECCCC------CEE
Confidence            789999  8898988886            6799999999865      56666654 4568889999998      666


Q ss_pred             EEEcCCC-EEEEECCCCCcceeeeCC------------------------------------------------------
Q 008363          251 LTAGHGG-LKFWDIRDPFRPLWDIHP------------------------------------------------------  275 (568)
Q Consensus       251 as~s~d~-v~lwD~~~~~~~~~~~~~------------------------------------------------------  275 (568)
                      +++  ++ |.+||+.+. ..+..+..                                                      
T Consensus       150 ~~~--~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  226 (337)
T 1pby_B          150 YGL--GRDLHVMDPEAG-TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL  226 (337)
T ss_dssp             EEE--SSSEEEEETTTT-EEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred             EEe--CCeEEEEECCCC-cEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC
Confidence            666  45 999999865 33222211                                                      


Q ss_pred             ------------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEE
Q 008363          276 ------------APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQV  343 (568)
Q Consensus       276 ------------h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~  343 (568)
                                  +...+.+++|+|++++|+++  ++.|++||+..        ++.        +..+.. ...+.+++|
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~--------~~~--------~~~~~~-~~~~~~~~~  287 (337)
T 1pby_B          227 ETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK--------NAS--------IKRVPL-PHSYYSVNV  287 (337)
T ss_dssp             TTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT--------TEE--------EEEEEC-SSCCCEEEE
T ss_pred             CCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC--------CcC--------cceecC-CCceeeEEE
Confidence                        11234569999999999988  79999999943        433        234443 345789999


Q ss_pred             ecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          344 SRLTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       344 sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                      +|++++|++++.++.|.+||+.+++....
T Consensus       288 s~dg~~l~~~~~~~~i~v~d~~~~~~~~~  316 (337)
T 1pby_B          288 STDGSTVWLGGALGDLAAYDAETLEKKGQ  316 (337)
T ss_dssp             CTTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred             CCCCCEEEEEcCCCcEEEEECcCCcEEEE
Confidence            99999999999999999999987765443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.70  E-value=3.9e-15  Score=148.90  Aligned_cols=216  Identities=11%  Similarity=0.078  Sum_probs=150.0

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeC-
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH-  201 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~-  201 (568)
                      .++++++.++.|.+||+.+++....+                          ..+... + +++|+  |+|++|++++. 
T Consensus        11 ~~~v~~~~~~~v~~~d~~~~~~~~~~--------------------------~~~~~~-~-~~~~s--~dg~~l~~~~~~   60 (331)
T 3u4y_A           11 FGIVVEQHLRRISFFSTDTLEILNQI--------------------------TLGYDF-V-DTAIT--SDCSNVVVTSDF   60 (331)
T ss_dssp             EEEEEEGGGTEEEEEETTTCCEEEEE--------------------------ECCCCE-E-EEEEC--SSSCEEEEEEST
T ss_pred             EEEEEecCCCeEEEEeCcccceeeeE--------------------------EccCCc-c-eEEEc--CCCCEEEEEeCC
Confidence            56888889999999999998877664                          222222 3 78888  88886666665 


Q ss_pred             CCeEEEEEccCCCCCCCCce-eEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC----CEEEEECCCCCcceeeeCCC
Q 008363          202 DGTVALWKFVASDSSIDSRP-LLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG----GLKFWDIRDPFRPLWDIHPA  276 (568)
Q Consensus       202 Dg~I~iwd~~~~~~~~~~~~-~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d----~v~lwD~~~~~~~~~~~~~h  276 (568)
                      ++.|.+||+.++      .. ...+..+..++.+++|+|++      ++|+++..+    .|.+||+.+. ..+..+.. 
T Consensus        61 ~~~i~~~d~~~~------~~~~~~~~~~~~~~~~~~~s~dg------~~l~~~~~~~~~~~i~v~d~~~~-~~~~~~~~-  126 (331)
T 3u4y_A           61 CQTLVQIETQLE------PPKVVAIQEGQSSMADVDITPDD------QFAVTVTGLNHPFNMQSYSFLKN-KFISTIPI-  126 (331)
T ss_dssp             TCEEEEEECSSS------SCEEEEEEECSSCCCCEEECTTS------SEEEECCCSSSSCEEEEEETTTT-EEEEEEEC-
T ss_pred             CCeEEEEECCCC------ceeEEecccCCCCccceEECCCC------CEEEEecCCCCcccEEEEECCCC-CeEEEEEC-
Confidence            899999999876      44 66666777776669999999      777765555    4999999877 55555543 


Q ss_pred             CCCeEEEEEcCCCCEEEEE-eCCCc-EEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEE-E
Q 008363          277 PKFIYGLDWLPDPGCVILS-FDDGA-MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAY-C  353 (568)
Q Consensus       277 ~~~i~~l~~sp~~~~l~s~-~~dg~-I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s-~  353 (568)
                      .....+++|+|+|++|+++ ..++. |.+|++..       .|....    .....+ .+...+..++|+|+|++|++ +
T Consensus       127 ~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~-------~g~~~~----~~~~~~-~~~~~~~~~~~spdg~~l~v~~  194 (331)
T 3u4y_A          127 PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA-------DGVLFD----TGQEFI-SGGTRPFNITFTPDGNFAFVAN  194 (331)
T ss_dssp             CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT-------TCCEEE----EEEEEE-CSSSSEEEEEECTTSSEEEEEE
T ss_pred             CCCccceEECCCCCEEEEEecCCCceEEEEEECC-------CCcEee----cCCccc-cCCCCccceEECCCCCEEEEEe
Confidence            3456899999999877665 55688 99999953       222210    001122 34456799999999986554 4


Q ss_pred             eCCCeEEEEEcCCCee---eccCCCCCcceeeeecccCCCCceEEc
Q 008363          354 SADGTVHRFQLTAKAV---EKDHSRNRPMHFLCGSVTEDESAITVN  396 (568)
Q Consensus       354 s~Dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~s~~~~~~~i~~~  396 (568)
                      ..++.|.+||+.++..   .........+  ....+++++..+.+.
T Consensus       195 ~~~~~v~v~d~~~~~~~~~~~~~~~~~~~--~~~~~spdg~~l~v~  238 (331)
T 3u4y_A          195 LIGNSIGILETQNPENITLLNAVGTNNLP--GTIVVSRDGSTVYVL  238 (331)
T ss_dssp             TTTTEEEEEECSSTTSCEEEEEEECSSCC--CCEEECTTSSEEEEE
T ss_pred             CCCCeEEEEECCCCcccceeeeccCCCCC--ceEEECCCCCEEEEE
Confidence            5689999999987765   3322222222  233577787766543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.70  E-value=5.1e-15  Score=148.24  Aligned_cols=205  Identities=9%  Similarity=0.099  Sum_probs=138.4

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEe-CCCcEEEEECCCCc---eeeEEeccCCccCCCCceEEEeecceecccccCC
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLL-GNGSLEVWEVPLLR---TMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGG  177 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s-~dg~V~iwd~~~~~---~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h  177 (568)
                      .+..++|+|++          ++|++++ .++.|.+||+..+.   ....+                          ..+
T Consensus        85 ~~~~~~~s~dg----------~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--------------------------~~~  128 (343)
T 1ri6_A           85 SLTHISTDHQG----------QFVFVGSYNAGNVSVTRLEDGLPVGVVDVV--------------------------EGL  128 (343)
T ss_dssp             CCSEEEECTTS----------SEEEEEETTTTEEEEEEEETTEEEEEEEEE--------------------------CCC
T ss_pred             CCcEEEEcCCC----------CEEEEEecCCCeEEEEECCCCccccccccc--------------------------cCC
Confidence            34499999999          6666555 48899999995322   22221                          222


Q ss_pred             cCccceEEEEccCCCCCEEEEEe-CCCeEEEEEccC-CCCCCCCceeE--EeeC-CCCCeeEEEEccCCCCCCCCcEE-E
Q 008363          178 TQSIPLTMEWSTSPPHDYLLAGC-HDGTVALWKFVA-SDSSIDSRPLL--CFSA-DTLPIRAVSWAPAESDSDSANVI-L  251 (568)
Q Consensus       178 ~~~V~~~v~~s~~~~g~~l~sgs-~Dg~I~iwd~~~-~~~~~~~~~~~--~~~~-h~~~V~~v~~~p~~~~~~~~~~l-a  251 (568)
                       ..+ .+++|+  |+|++|++++ .++.|.+||+.. +..    ....  .+.. ....+..++|+|++      .+| +
T Consensus       129 -~~~-~~~~~s--~dg~~l~~~~~~~~~v~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~pdg------~~l~~  194 (343)
T 1ri6_A          129 -DGC-HSANIS--PDNRTLWVPALKQDRICLFTVSDDGHL----VAQDPAEVTTVEGAGPRHMVFHPNE------QYAYC  194 (343)
T ss_dssp             -TTB-CCCEEC--TTSSEEEEEEGGGTEEEEEEECTTSCE----EEEEEEEEECSTTCCEEEEEECTTS------SEEEE
T ss_pred             -CCc-eEEEEC--CCCCEEEEecCCCCEEEEEEecCCCce----eeecccccccCCCCCcceEEECCCC------CEEEE
Confidence             234 889999  8898888877 899999999986 311    2222  2322 34578899999998      655 4


Q ss_pred             EEcCCC-EEEEECCCCC-c--ceeeeC----CC--CCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCc
Q 008363          252 TAGHGG-LKFWDIRDPF-R--PLWDIH----PA--PKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPF  320 (568)
Q Consensus       252 s~s~d~-v~lwD~~~~~-~--~~~~~~----~h--~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~  320 (568)
                      ++..++ |.+||+.... .  ....+.    ++  ...+..++|+|++++|+++. .++.|++||+...      ++.. 
T Consensus       195 ~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~------~~~~-  267 (343)
T 1ri6_A          195 VNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSED------GSVL-  267 (343)
T ss_dssp             EETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT------SCCE-
T ss_pred             EeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCC------CCce-
Confidence            555677 9999996421 1  122221    11  23567899999999888665 6999999999521      1221 


Q ss_pred             cCccccceEEEecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEEcC--CCee
Q 008363          321 AGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCS-ADGTVHRFQLT--AKAV  369 (568)
Q Consensus       321 ~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~--~~~~  369 (568)
                           ..+..+..+.. +.+++|+|++++|++++ .|+.|.+|++.  ++.+
T Consensus       268 -----~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~  313 (343)
T 1ri6_A          268 -----SKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  313 (343)
T ss_dssp             -----EEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             -----EEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence                 23345554544 78999999999888887 68999999554  5443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.68  E-value=4.9e-14  Score=142.96  Aligned_cols=255  Identities=7%  Similarity=0.009  Sum_probs=156.7

Q ss_pred             cCCceeeEEEEccCCCCcccccCcccEEEEEeCC----CcEEEEECCC--Cce--eeEEeccCC-------------ccC
Q 008363           98 HNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGN----GSLEVWEVPL--LRT--MKAIYLSSM-------------KEG  156 (568)
Q Consensus        98 h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~d----g~V~iwd~~~--~~~--~~~l~~~~~-------------~~~  156 (568)
                      |...+. .++|+|++          ++|++++.+    +.|.+|++..  +..  +..+..+..             +..
T Consensus        48 ~~~~p~-~l~~spdg----------~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~  116 (361)
T 3scy_A           48 EVANPS-YLIPSADG----------KFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTAN  116 (361)
T ss_dssp             ECSCCC-SEEECTTS----------SEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEE
T ss_pred             cCCCCc-eEEECCCC----------CEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEE
Confidence            444343 89999999          788888876    8999998865  332  222211111             122


Q ss_pred             CCCceEEEeecce--ecccc------c--------CCcCccceEEEEccCCCCCEEEEEe-CCCeEEEEEccCCCCCC--
Q 008363          157 TDPRFVKLEPVFR--CSMLK------C--------GGTQSIPLTMEWSTSPPHDYLLAGC-HDGTVALWKFVASDSSI--  217 (568)
Q Consensus       157 ~~~~~v~~~~~~~--~~~~~------~--------~h~~~V~~~v~~s~~~~g~~l~sgs-~Dg~I~iwd~~~~~~~~--  217 (568)
                      ..+..+.+|+...  .....      .        .+...+ .+++|+  |+|++|++++ .++.|.+|++.......  
T Consensus       117 ~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~s--pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~  193 (361)
T 3scy_A          117 YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHL-HCVRIT--PDGKYLLADDLGTDQIHKFNINPNANADNK  193 (361)
T ss_dssp             TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCE-EEEEEC--TTSSEEEEEETTTTEEEEEEECTTCCTTTC
T ss_pred             CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcc-eEEEEC--CCCCEEEEEeCCCCEEEEEEEcCCCCcccc
Confidence            2455666666542  10000      0        011222 679999  8898666555 58999999988552100  


Q ss_pred             C-Cce----eEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc-CCC-EEEEECCCCC-cceeee---CCCCCCeEEEEEc
Q 008363          218 D-SRP----LLCFSADTLPIRAVSWAPAESDSDSANVILTAG-HGG-LKFWDIRDPF-RPLWDI---HPAPKFIYGLDWL  286 (568)
Q Consensus       218 ~-~~~----~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s-~d~-v~lwD~~~~~-~~~~~~---~~h~~~i~~l~~s  286 (568)
                      . ...    ......+...+..++|+|++      +++++++ .++ |.+||+.++. ..+..+   ..+......++|+
T Consensus       194 ~~l~~~~~~~~~~~~~~~~~~~~~~spdg------~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~s  267 (361)
T 3scy_A          194 EKFLTKGTPEAFKVAPGSGPRHLIFNSDG------KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLS  267 (361)
T ss_dssp             CCCEEEEEEEEEECCTTCCEEEEEECTTS------SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEEC
T ss_pred             cceeecccccceecCCCCCCeEEEEcCCC------CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEEC
Confidence            0 011    12222345568899999999      6666665 466 9999998552 112222   2334557899999


Q ss_pred             CCCCEEEEEeCC--CcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEE
Q 008363          287 PDPGCVILSFDD--GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCS-ADGTVHRFQ  363 (568)
Q Consensus       287 p~~~~l~s~~~d--g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd  363 (568)
                      |||++|+++..+  +.|.+|++..      .+|+.      ..+..+.. ...+.+++|+|+|++|++++ .++.|.+|+
T Consensus       268 pdg~~l~v~~~~~~~~i~v~~~~~------~~g~~------~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~  334 (361)
T 3scy_A          268 PDGKYLYASNRLKADGVAIFKVDE------TNGTL------TKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFE  334 (361)
T ss_dssp             TTSSEEEEEECSSSCEEEEEEECT------TTCCE------EEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEECCCCCCEEEEEEEcC------CCCcE------EEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEE
Confidence            999999877664  8999999953      12332      22334444 45678999999999888887 678999965


Q ss_pred             c--CCCeeeccCCCCCcceeeeec
Q 008363          364 L--TAKAVEKDHSRNRPMHFLCGS  385 (568)
Q Consensus       364 ~--~~~~~~~~~~~~~~~~~~~~s  385 (568)
                      +  .++.+.........+...|..
T Consensus       335 ~d~~~g~~~~~~~~~~~~~p~~v~  358 (361)
T 3scy_A          335 RDQATGLLTDIKKDIKVDKPVCLK  358 (361)
T ss_dssp             ECTTTCCEEECSCCEECSSEEEEE
T ss_pred             EECCCCcEeecceeeeCCCCeEEE
Confidence            5  456555442222333444433

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.68  E-value=1e-15  Score=166.04  Aligned_cols=196  Identities=14%  Similarity=0.021  Sum_probs=143.2

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeC-CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCc-C
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLG-NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGT-Q  179 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~-dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~-~  179 (568)
                      .+++++|+|+|          +.||+++. ||+++||++.++...+.                           ..|. .
T Consensus        23 ~~~~~~~~~DG----------~~la~~s~~~g~~~lw~~~~g~~~~l---------------------------t~~~~~   65 (582)
T 3o4h_A           23 EKYSLQGVVDG----------DKLLVVGFSEGSVNAYLYDGGETVKL---------------------------NREPIN   65 (582)
T ss_dssp             CEEEEEEEETT----------TEEEEEEEETTEEEEEEEETTEEEEC---------------------------CSSCCS
T ss_pred             chheeecCCCC----------CeEEEEEccCCceeEEEEcCCCcEee---------------------------eccccc
Confidence            57799999999          79998887 99999999866554322                           3333 5


Q ss_pred             ccceEEEEccCCCCCEEEEEeC---CCeEEEEEccC--CCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363          180 SIPLTMEWSTSPPHDYLLAGCH---DGTVALWKFVA--SDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG  254 (568)
Q Consensus       180 ~V~~~v~~s~~~~g~~l~sgs~---Dg~I~iwd~~~--~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s  254 (568)
                      .+ .+++|+  |+ +++++++.   +....||.+..  ..     ... .+..+ ..+...+|+|++    ...++++++
T Consensus        66 ~~-~~~~~s--pd-~~l~~~~~~~g~~~~~l~~~~~~~~g-----~~~-~l~~~-~~~~~~~~s~dg----~~~~~~s~~  130 (582)
T 3o4h_A           66 SV-LDPHYG--VG-RVILVRDVSKGAEQHALFKVNTSRPG-----EEQ-RLEAV-KPMRILSGVDTG----EAVVFTGAT  130 (582)
T ss_dssp             EE-CEECTT--CS-EEEEEEECSTTSCCEEEEEEETTSTT-----CCE-ECTTS-CSBEEEEEEECS----SCEEEEEEC
T ss_pred             cc-ccccCC--CC-eEEEEeccCCCCcceEEEEEeccCCC-----ccc-cccCC-CCceeeeeCCCC----CeEEEEecC
Confidence            67 899999  77 77777775   55667777654  21     112 33222 234566888887    123566666


Q ss_pred             CCCEEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363          255 HGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDD----GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL  330 (568)
Q Consensus       255 ~d~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d----g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~  330 (568)
                      .+++.+||+.++ ....... +..  .+++|+|||++|++++.+    +.|++||+..        |+.         ..
T Consensus       131 ~~~~~l~d~~~g-~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~--------g~~---------~~  189 (582)
T 3o4h_A          131 EDRVALYALDGG-GLRELAR-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS--------GGL---------RV  189 (582)
T ss_dssp             SSCEEEEEEETT-EEEEEEE-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTT--------CCC---------EE
T ss_pred             CCCceEEEccCC-cEEEeec-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC--------CCc---------eE
Confidence            677779999876 4333332 222  789999999999988776    7899999843        433         46


Q ss_pred             EecCCCCEEEEEEecCCCEEEEEeCCC--eEEEEEcCCCeee
Q 008363          331 VNCSSFAIWSVQVSRLTGMVAYCSADG--TVHRFQLTAKAVE  370 (568)
Q Consensus       331 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg--~v~iwd~~~~~~~  370 (568)
                      +..|...+..++|+|||++|+++..++  .|++||+.++...
T Consensus       190 l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          190 FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             ECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             eecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence            778888999999999999999888899  8999999887765

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.67  E-value=2.2e-15  Score=167.29  Aligned_cols=225  Identities=10%  Similarity=0.140  Sum_probs=154.4

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      +.+++|+|++          .++++  .++.|++||+.+++....                           ..+...+ 
T Consensus        84 v~~~~~spd~----------~~~~~--~~~~i~~~d~~~~~~~~l---------------------------~~~~~~~-  123 (706)
T 2z3z_A           84 SFRTLDAGRG----------LVVLF--TQGGLVGFDMLARKVTYL---------------------------FDTNEET-  123 (706)
T ss_dssp             CEEEEETTTT----------EEEEE--ETTEEEEEETTTTEEEEE---------------------------ECCTTCC-
T ss_pred             ceeEEECCCC----------eEEEE--ECCEEEEEECCCCceEEc---------------------------cCCcccc-
Confidence            5599999995          45544  359999999998765433                           3344556 


Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccC-----CCCCCCCceeEEeeCCCCC--------------eeEEEEccCCCC
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVA-----SDSSIDSRPLLCFSADTLP--------------IRAVSWAPAESD  243 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~-----~~~~~~~~~~~~~~~h~~~--------------V~~v~~~p~~~~  243 (568)
                      .+++|+  |+|++|+++ .|+.|.+||+.+     +      ........+...              +.+++|+|++  
T Consensus       124 ~~~~~S--pdG~~la~~-~~~~i~v~~~~~~~~~~g------~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg--  192 (706)
T 2z3z_A          124 ASLDFS--PVGDRVAYV-RNHNLYIARGGKLGEGMS------RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG--  192 (706)
T ss_dssp             TTCEEC--TTSSEEEEE-ETTEEEEEECBCTTSCCC------CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS--
T ss_pred             cCCcCC--CCCCEEEEE-ECCeEEEEecCcccccCC------CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCC--
Confidence            788999  899999985 589999999987     5      333323233332              5899999999  


Q ss_pred             CCCCcEEEEEc---------------------------------CCC-EEEEECCCCCcceeee--CCCCCCeEEEEEcC
Q 008363          244 SDSANVILTAG---------------------------------HGG-LKFWDIRDPFRPLWDI--HPAPKFIYGLDWLP  287 (568)
Q Consensus       244 ~~~~~~las~s---------------------------------~d~-v~lwD~~~~~~~~~~~--~~h~~~i~~l~~sp  287 (568)
                          ++|++++                                 .+. |++||+.++ ......  ..|...+.+++|+|
T Consensus       193 ----~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~-~~~~~~~~~~~~~~~~~~~~sp  267 (706)
T 2z3z_A          193 ----SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG-KTVYLQTGEPKEKFLTNLSWSP  267 (706)
T ss_dssp             ----SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT-EEEECCCCSCTTCEEEEEEECT
T ss_pred             ----CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC-ceEeeccCCCCceeEeeEEEEC
Confidence                8888886                                 335 999999876 333222  25667899999999


Q ss_pred             CCCEEEEEeCCC-----cEEEEEccccccCCCCCCCCccCccccceEEEecCCC---CEEEEEEec--CCCEEEEEeCCC
Q 008363          288 DPGCVILSFDDG-----AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSF---AIWSVQVSR--LTGMVAYCSADG  357 (568)
Q Consensus       288 ~~~~l~s~~~dg-----~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~---~V~~l~~sp--~~~~l~s~s~Dg  357 (568)
                      ||++|++++.++     .|++||+..        |+..     ..+.. ..+..   .+.+++|+|  +|++|++++.||
T Consensus       268 dg~~l~~~~~~~~~~~~~v~~~d~~~--------g~~~-----~~~~~-~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g  333 (706)
T 2z3z_A          268 DENILYVAEVNRAQNECKVNAYDAET--------GRFV-----RTLFV-ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG  333 (706)
T ss_dssp             TSSEEEEEEECTTSCEEEEEEEETTT--------CCEE-----EEEEE-EECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred             CCCEEEEEEeCCCCCeeEEEEEECCC--------Ccee-----eEEEE-ccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence            999999987765     899999843        4211     11111 12222   246789999  999999999999


Q ss_pred             eEEEEEcC-CCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363          358 TVHRFQLT-AKAVEKDHSRNRPMHFLCGSVTEDESAITVNT  397 (568)
Q Consensus       358 ~v~iwd~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~  397 (568)
                      .++||.+. ++...............+..+++++..|.+..
T Consensus       334 ~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~  374 (706)
T 2z3z_A          334 WNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFES  374 (706)
T ss_dssp             SCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEE
T ss_pred             ccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEe
Confidence            99999876 33333322222222222347888888776543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.67  E-value=7e-16  Score=171.70  Aligned_cols=228  Identities=9%  Similarity=0.075  Sum_probs=150.5

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcC---cc
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ---SI  181 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~---~V  181 (568)
                      +++|+|++          .++++ +.|+.|++||+.+++....+                          .+|..   .+
T Consensus        20 ~~~~s~dg----------~~~~~-~~d~~i~~~~~~~g~~~~~~--------------------------~~~~~~~~~~   62 (719)
T 1z68_A           20 FPNWISGQ----------EYLHQ-SADNNIVLYNIETGQSYTIL--------------------------SNRTMKSVNA   62 (719)
T ss_dssp             CCEESSSS----------EEEEE-CTTSCEEEEESSSCCEEEEE--------------------------CHHHHHTTTC
T ss_pred             ccEECCCC----------eEEEE-cCCCCEEEEEcCCCcEEEEE--------------------------ccccccccce
Confidence            78999999          55554 46999999999998876554                          22222   36


Q ss_pred             ceEEEEccCCCCCEEEEEeC---------CCeEEEEEccCCCCCCCCcee--EEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363          182 PLTMEWSTSPPHDYLLAGCH---------DGTVALWKFVASDSSIDSRPL--LCFSADTLPIRAVSWAPAESDSDSANVI  250 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~---------Dg~I~iwd~~~~~~~~~~~~~--~~~~~h~~~V~~v~~~p~~~~~~~~~~l  250 (568)
                       .+++|+  |||++|++++.         |+.|++||+.++      +.+  ..+   ...+..++|+|+|      +.|
T Consensus        63 -~~~~~S--pDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g------~~~~~~~l---~~~~~~~~~SPDG------~~l  124 (719)
T 1z68_A           63 -SNYGLS--PDRQFVYLESDYSKLWRYSYTATYYIYDLSNG------EFVRGNEL---PRPIQYLCWSPVG------SKL  124 (719)
T ss_dssp             -SEEEEC--TTSSEEEEEEEEEECSSSCEEEEEEEEETTTT------EECCSSCC---CSSBCCEEECSST------TCE
T ss_pred             -eeEEEC--CCCCeEEEEecCceeEEeecceEEEEEECCCC------ccccceec---CcccccceECCCC------CEE
Confidence             899999  99999999886         799999999876      331  112   3568899999999      788


Q ss_pred             EEEcCCCEEEEECCCCCcceeeeCCCCCCe-----------------EEEEEcCCCCEEEEEeCCC--------------
Q 008363          251 LTAGHGGLKFWDIRDPFRPLWDIHPAPKFI-----------------YGLDWLPDPGCVILSFDDG--------------  299 (568)
Q Consensus       251 as~s~d~v~lwD~~~~~~~~~~~~~h~~~i-----------------~~l~~sp~~~~l~s~~~dg--------------  299 (568)
                      |.+..+.|++||+.++........++...|                 .+++|+|||++|++++.|.              
T Consensus       125 a~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~  204 (719)
T 1z68_A          125 AYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDE  204 (719)
T ss_dssp             EEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSS
T ss_pred             EEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCC
Confidence            888754599999987632211222333322                 4899999999999987642              


Q ss_pred             --------------------cEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCC---
Q 008363          300 --------------------AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD---  356 (568)
Q Consensus       300 --------------------~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D---  356 (568)
                                          .|++||+..        ++.........-..+.+|...+..++|+|+++++++....   
T Consensus       205 ~~~~~~~~~yp~~g~~~~~~~l~~~d~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~  276 (719)
T 1z68_A          205 QYPRTINIPYPKAGAKNPVVRIFIIDTTY--------PAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQN  276 (719)
T ss_dssp             SSCEEEEEECCBTTSCCCEEEEEEEESSC--------HHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTT
T ss_pred             CCccceeecCCCCCCCCCeeEEEEEECCC--------CCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccC
Confidence                                678888843        2210000000001234678889999999998777775433   


Q ss_pred             -CeEEEEE----cCCCeeeccCC---CCCcceee-----eecccCCCCceEE
Q 008363          357 -GTVHRFQ----LTAKAVEKDHS---RNRPMHFL-----CGSVTEDESAITV  395 (568)
Q Consensus       357 -g~v~iwd----~~~~~~~~~~~---~~~~~~~~-----~~s~~~~~~~i~~  395 (568)
                       ..|++||    +.++.......   ......+.     ...+++++..+.+
T Consensus       277 ~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  328 (719)
T 1z68_A          277 VSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYK  328 (719)
T ss_dssp             EEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEE
T ss_pred             eEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEE
Confidence             2488899    77665543321   01111111     3467788886654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.66  E-value=3.5e-15  Score=166.03  Aligned_cols=227  Identities=11%  Similarity=0.103  Sum_probs=152.4

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCC---------CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGN---------GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML  173 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~d---------g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~  173 (568)
                      +.+++|+|+|          ++||+++.+         +.|.+||+.+++. ..+..                       
T Consensus        63 v~~~~~SpDg----------~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~-----------------------  108 (723)
T 1xfd_A           63 AIRYEISPDR----------EYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDP-----------------------  108 (723)
T ss_dssp             CSEEEECTTS----------SEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCC-----------------------
T ss_pred             cceEEECCCC----------CEEEEEecCccceeecceeeEEEEECCCCce-EeccC-----------------------
Confidence            5599999999          799999875         7888999998765 22211                       


Q ss_pred             ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCe------------------eEE
Q 008363          174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPI------------------RAV  235 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V------------------~~v  235 (568)
                      ..+|...+ ..++|+  |+|+.||.++. +.|++||+.++      ........+...+                  .++
T Consensus       109 ~~~~~~~~-~~~~~S--PdG~~la~~~~-~~i~~~~~~~g------~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~  178 (723)
T 1xfd_A          109 PEVSNAKL-QYAGWG--PKGQQLIFIFE-NNIYYCAHVGK------QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH  178 (723)
T ss_dssp             TTCCSCCC-SBCCBC--SSTTCEEEEET-TEEEEESSSSS------CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred             Cccccccc-cccEEC--CCCCEEEEEEC-CeEEEEECCCC------ceEEEecCCCCCceECcccceeEEEEeccCcceE
Confidence            03455556 889999  89999999986 79999999876      4444444433333                  789


Q ss_pred             EEccCCCCCCCCcEEEEEcCC-----------------------------------CEEEEECCCCCcceeeeCCC----
Q 008363          236 SWAPAESDSDSANVILTAGHG-----------------------------------GLKFWDIRDPFRPLWDIHPA----  276 (568)
Q Consensus       236 ~~~p~~~~~~~~~~las~s~d-----------------------------------~v~lwD~~~~~~~~~~~~~h----  276 (568)
                      +|+|++      +.|++++.+                                   .|++||+.++ .....+..+    
T Consensus       179 ~~SpDg------~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~-~~~~~l~~~~~~~  251 (723)
T 1xfd_A          179 WWSPDG------TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP-THDLEMMPPDDPR  251 (723)
T ss_dssp             EECTTS------SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS-CCCEECCCCCCGG
T ss_pred             EECCCC------CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC-ceeEEeeCCccCC
Confidence            999999      788887643                                   3889999876 433444443    


Q ss_pred             --CCCeEEEEEcCCCCEEEEEeC----CCcEEEEEccccccCCCCCCCCccCccccceEEEec-CCCCEE----EEEEec
Q 008363          277 --PKFIYGLDWLPDPGCVILSFD----DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC-SSFAIW----SVQVSR  345 (568)
Q Consensus       277 --~~~i~~l~~sp~~~~l~s~~~----dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~-h~~~V~----~l~~sp  345 (568)
                        ...+..++|+|||++|++.+.    +..|++||+.        +|+..        ..+.. +...+.    .++|+|
T Consensus       252 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~--------~g~~~--------~~~~~~~~~~~~~~~~~~~~sp  315 (723)
T 1xfd_A          252 MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT--------TGVCT--------KKHEDESEAWLHRQNEEPVFSK  315 (723)
T ss_dssp             GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT--------TCCEE--------EEEEEECSSCCCCCCCCCEECT
T ss_pred             CccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCC--------CCcce--------EEEEeccCCEEeccCCCceEcC
Confidence              567899999999998877643    3579999984        34432        23322 333333    789999


Q ss_pred             CCCEEEE--EeCCC------eEEEEE-cCCCe---eeccCCCCCcceeeeecccCCCCceEEcc
Q 008363          346 LTGMVAY--CSADG------TVHRFQ-LTAKA---VEKDHSRNRPMHFLCGSVTEDESAITVNT  397 (568)
Q Consensus       346 ~~~~l~s--~s~Dg------~v~iwd-~~~~~---~~~~~~~~~~~~~~~~s~~~~~~~i~~~~  397 (568)
                      +|+.|+.  +..|+      .|++|| ..++.   ...- ............+++++..|....
T Consensus       316 dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l-~~~~~~~~~~~~~spdg~~l~~~~  378 (723)
T 1xfd_A          316 DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI-TSGDWDVTKILAYDEKGNKIYFLS  378 (723)
T ss_dssp             TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS-CCSSSCEEEEEEEETTTTEEEEEE
T ss_pred             CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEe-ecCCeEEEeeeEEcCCCCEEEEEE
Confidence            9987765  45677      567777 33333   2211 111111122236889998886543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.66  E-value=1.2e-14  Score=146.17  Aligned_cols=222  Identities=12%  Similarity=0.085  Sum_probs=152.5

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccC--C--------------ccCCCCceEEEeecc
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSS--M--------------KEGTDPRFVKLEPVF  168 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~--~--------------~~~~~~~~v~~~~~~  168 (568)
                      .+++++++          .++++++.++.|.+||+.+++.+..+..+.  .              +....+..+.+++..
T Consensus         4 g~~~~~~~----------~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~   73 (349)
T 1jmx_B            4 GPALKAGH----------EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD   73 (349)
T ss_dssp             CCCCCTTC----------EEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             cccccCCC----------EEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC
Confidence            34566776          789999999999999999988877765443  1              222344556666654


Q ss_pred             ee--ccccc-CC-----cCccceEEEEccCCCCCEEEEEeCC------------CeEEEEEccCCCCCCCCceeEEeeCC
Q 008363          169 RC--SMLKC-GG-----TQSIPLTMEWSTSPPHDYLLAGCHD------------GTVALWKFVASDSSIDSRPLLCFSAD  228 (568)
Q Consensus       169 ~~--~~~~~-~h-----~~~V~~~v~~s~~~~g~~l~sgs~D------------g~I~iwd~~~~~~~~~~~~~~~~~~h  228 (568)
                      +.  ..... ++     ...+ ..++|+  |+|++|++++.+            +.|.+||+.++..   ...+..+.. 
T Consensus        74 t~~~~~~~~~~~~~~~~~~~~-~~~~~s--pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~-  146 (349)
T 1jmx_B           74 TCKNTFHANLSSVPGEVGRSM-YSFAIS--PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE---AKPVRTFPM-  146 (349)
T ss_dssp             TTEEEEEEESCCSTTEEEECS-SCEEEC--TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG---BCCSEEEEC-
T ss_pred             CCcEEEEEEcccccccccccc-cceEEC--CCCCEEEEEcccccccccccccCCCeEEEEECCCccc---cceeeeccC-
Confidence            31  11111 22     2224 789999  889999998865            8999999986421   133344433 


Q ss_pred             CCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcceeeeCCC--------------------------------
Q 008363          229 TLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPA--------------------------------  276 (568)
Q Consensus       229 ~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~~~~~~h--------------------------------  276 (568)
                      ...+.+++|+|++      ++++ ++.+ |.+||+.++ ..+..+..+                                
T Consensus       147 ~~~~~~~~~s~dg------~l~~-~~~~-i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (349)
T 1jmx_B          147 PRQVYLMRAADDG------SLYV-AGPD-IYKMDVKTG-KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA  217 (349)
T ss_dssp             CSSCCCEEECTTS------CEEE-ESSS-EEEECTTTC-CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred             CCcccceeECCCC------cEEE-ccCc-EEEEeCCCC-ceeccccccccCCccccCccceeeecCCCcceeEEeeeeee
Confidence            3468899999998      6444 4332 999999876 333333211                                


Q ss_pred             ------------------------------------CCCeEEEEEcC-CCCEEEEEeCCCcEEEEEccccccCCCCCCCC
Q 008363          277 ------------------------------------PKFIYGLDWLP-DPGCVILSFDDGAMRIVSLLKAAYDVPATGKP  319 (568)
Q Consensus       277 ------------------------------------~~~i~~l~~sp-~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~  319 (568)
                                                          ...+..++|+| ++++|+++  ++.|++||+..        ++.
T Consensus       218 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~--------~~~  287 (349)
T 1jmx_B          218 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ--------RKL  287 (349)
T ss_dssp             EC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT--------TEE
T ss_pred             ecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECcc--------CeE
Confidence                                                11345778889 99999888  88999999943        433


Q ss_pred             ccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          320 FAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       320 ~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                              +..+. ....+.+++|+|++++|++++.++.|.+||+.+++...
T Consensus       288 --------~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~  330 (349)
T 1jmx_B          288 --------IKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK  330 (349)
T ss_dssp             --------EEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred             --------EEEEc-CCCCccceEECCCCCEEEEecCCCeEEEEeccccceee
Confidence                    23443 23456789999999888888899999999998766543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.66  E-value=3.1e-15  Score=166.99  Aligned_cols=245  Identities=13%  Similarity=0.130  Sum_probs=160.0

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      ...|.+ .+..++|+|+|          ++||+++. +.|++||+.+++.......+.      .....-.+..    ..
T Consensus       147 l~~~~~-~~~~~~~SPDG----------~~la~~~~-~~i~~~d~~~g~~~~~~~~~~------~~~~~g~~~~----v~  204 (741)
T 2ecf_A          147 LTHGEG-FATDAKLSPKG----------GFVSFIRG-RNLWVIDLASGRQMQLTADGS------TTIGNGIAEF----VA  204 (741)
T ss_dssp             CCCSSS-CEEEEEECTTS----------SEEEEEET-TEEEEEETTTTEEEECCCCCC------SSEEESCCCH----HH
T ss_pred             cccCCc-ccccccCCCCC----------CEEEEEeC-CcEEEEecCCCCEEEeccCCc------cceeccccce----ee
Confidence            345555 45599999999          78998874 699999999876554321110      0000000000    00


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCC---------------------------------eEEEEEccC-CCCCCCCc
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDG---------------------------------TVALWKFVA-SDSSIDSR  220 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg---------------------------------~I~iwd~~~-~~~~~~~~  220 (568)
                      ......+ .+++|+  |||++|++++.|+                                 .|.+||+.+ +      .
T Consensus       205 ~~~~~~~-~~~~~S--pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~------~  275 (741)
T 2ecf_A          205 DEEMDRH-TGYWWA--PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA------Q  275 (741)
T ss_dssp             HHHSCCC-CSEEEC--TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC------C
T ss_pred             eeccccc-cceEEC--CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC------c
Confidence            0001124 779999  8999999998776                                 788899886 5      3


Q ss_pred             eeEEee--CCCCCeeEEEEccCCCCCCCCcEEEEEcC-----CC-EEEEECCCCCcceeeeCCCCC----CeEEEEEcCC
Q 008363          221 PLLCFS--ADTLPIRAVSWAPAESDSDSANVILTAGH-----GG-LKFWDIRDPFRPLWDIHPAPK----FIYGLDWLPD  288 (568)
Q Consensus       221 ~~~~~~--~h~~~V~~v~~~p~~~~~~~~~~las~s~-----d~-v~lwD~~~~~~~~~~~~~h~~----~i~~l~~sp~  288 (568)
                      ......  .|...+..++| |++      ++|+.++.     +. |++||+.++ .....+..+..    .+..++|+||
T Consensus       276 ~~~~~~~~~~~~~~~~~~~-pDg------~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~spd  347 (741)
T 2ecf_A          276 TQWIDLGKEQDIYLARVNW-RDP------QHLSFQRQSRDQKKLDLVEVTLASN-QQRVLAHETSPTWVPLHNSLRFLDD  347 (741)
T ss_dssp             CEEECCCSCSSEEEEEEEE-EET------TEEEEEEEETTSSEEEEEEEETTTC-CEEEEEEEECSSCCCCCSCCEECTT
T ss_pred             eEEecCCCCcceEEEEEEe-CCC------CEEEEEEecccCCeEEEEEEECCCC-ceEEEEEcCCCCcCCcCCceEECCC
Confidence            333222  47788999999 999      77776543     35 999999987 44444433332    3468999999


Q ss_pred             CCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEE-EEecCCCEEEE-EeCCC--eEEEEEc
Q 008363          289 PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSV-QVSRLTGMVAY-CSADG--TVHRFQL  364 (568)
Q Consensus       289 ~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l-~~sp~~~~l~s-~s~Dg--~v~iwd~  364 (568)
                      |+++++++.||.++||.+..       .|.         +..+..|...|..+ .|+|+++.|+. ++.|+  .++||++
T Consensus       348 g~~~~~~~~~g~~~l~~~~~-------~~~---------~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~  411 (741)
T 2ecf_A          348 GSILWSSERTGFQHLYRIDS-------KGK---------AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAV  411 (741)
T ss_dssp             SCEEEEECTTSSCEEEEECS-------SSC---------EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEE
T ss_pred             CeEEEEecCCCccEEEEEcC-------CCC---------eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEE
Confidence            99888888899888888742       222         24667788888887 59999987755 44455  8999998


Q ss_pred             CC-CeeeccCCCCCcceeeeecccCCCCceEEc
Q 008363          365 TA-KAVEKDHSRNRPMHFLCGSVTEDESAITVN  396 (568)
Q Consensus       365 ~~-~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~  396 (568)
                      .. +...+....  .......++++++..+++.
T Consensus       412 ~~~g~~~~~l~~--~~~~~~~~~spdg~~l~~~  442 (741)
T 2ecf_A          412 PLQGGQPQRLSK--APGMHSASFARNASVYVDS  442 (741)
T ss_dssp             ETTCCCCEECCC--SCSEEEEEECTTSSEEEEE
T ss_pred             EcCCCCeeeccc--CCCceEEEECCCCCEEEEE
Confidence            64 221222111  2223456788998887764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.65  E-value=7.3e-15  Score=163.07  Aligned_cols=247  Identities=14%  Similarity=0.120  Sum_probs=163.2

Q ss_pred             EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC-----CceeeEEeccCCccCCCCceEEEeec
Q 008363           93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL-----LRTMKAIYLSSMKEGTDPRFVKLEPV  167 (568)
Q Consensus        93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~-----~~~~~~l~~~~~~~~~~~~~v~~~~~  167 (568)
                      .....|.+ .+.+++|+|+|          +.||++ .|+.|++|++.+     ++.........      .....-.+ 
T Consensus       114 ~~l~~~~~-~~~~~~~SpdG----------~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~------~~~~~g~~-  174 (706)
T 2z3z_A          114 TYLFDTNE-ETASLDFSPVG----------DRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGT------ETLVYGQA-  174 (706)
T ss_dssp             EEEECCTT-CCTTCEECTTS----------SEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCB------TTEEESSC-
T ss_pred             EEccCCcc-cccCCcCCCCC----------CEEEEE-ECCeEEEEecCcccccCCCcEEeccCCC------CCeEcccc-
Confidence            33445555 34589999999          788885 679999999988     66554321110      00000000 


Q ss_pred             ceecccccCCcCccceEEEEccCCCCCEEEEEe---------------------------------CCCeEEEEEccCCC
Q 008363          168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC---------------------------------HDGTVALWKFVASD  214 (568)
Q Consensus       168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs---------------------------------~Dg~I~iwd~~~~~  214 (568)
                           ....+...+ .++.|+  |+|++|++++                                 .+..|.+||+.++ 
T Consensus       175 -----~~~ee~~~~-~~~~~S--pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~-  245 (706)
T 2z3z_A          175 -----VHQREFGIE-KGTFWS--PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG-  245 (706)
T ss_dssp             -----CGGGCTTCC-CSEEEC--TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT-
T ss_pred             -----hhhhhcCCC-ceEEEC--CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC-
Confidence                 011223345 789999  8999999988                                 4578999999866 


Q ss_pred             CCCCCceeEEe--eCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-----C-EEEEECCCCCcceeee-CCCCC---CeEE
Q 008363          215 SSIDSRPLLCF--SADTLPIRAVSWAPAESDSDSANVILTAGHG-----G-LKFWDIRDPFRPLWDI-HPAPK---FIYG  282 (568)
Q Consensus       215 ~~~~~~~~~~~--~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-----~-v~lwD~~~~~~~~~~~-~~h~~---~i~~  282 (568)
                           ......  ..|...+.+++|+|++      ++|++++.+     . |++||+.++....... ..+..   .+..
T Consensus       246 -----~~~~~~~~~~~~~~~~~~~~spdg------~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~  314 (706)
T 2z3z_A          246 -----KTVYLQTGEPKEKFLTNLSWSPDE------NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHP  314 (706)
T ss_dssp             -----EEEECCCCSCTTCEEEEEEECTTS------SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSC
T ss_pred             -----ceEeeccCCCCceeEeeEEEECCC------CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCC
Confidence                 333322  2567789999999999      777776543     3 9999998762221111 12222   2467


Q ss_pred             EEEcC--CCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE-EEEecCCCEEEEEeCC-C-
Q 008363          283 LDWLP--DPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS-VQVSRLTGMVAYCSAD-G-  357 (568)
Q Consensus       283 l~~sp--~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~-l~~sp~~~~l~s~s~D-g-  357 (568)
                      ++|+|  +|++|++++.|+.++||++..       .+.        .+..+..|...+.. ++|+|+++.|+.++.+ + 
T Consensus       315 ~~~sp~~dg~~l~~~~~~g~~~l~~~~~-------~~~--------~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~  379 (706)
T 2z3z_A          315 LTFLPGSNNQFIWQSRRDGWNHLYLYDT-------TGR--------LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASP  379 (706)
T ss_dssp             CEECTTCSSEEEEEECTTSSCEEEEEET-------TSC--------EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCT
T ss_pred             ceeecCCCCEEEEEEccCCccEEEEEEC-------CCC--------EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCC
Confidence            89999  999999998999999998852       232        23566777778877 8999999877666544 4 


Q ss_pred             ---eEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEc
Q 008363          358 ---TVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVN  396 (568)
Q Consensus       358 ---~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~  396 (568)
                         .|+.||+.++....-..   ...+...++++++..++..
T Consensus       380 ~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~  418 (706)
T 2z3z_A          380 LERHFYCIDIKGGKTKDLTP---ESGMHRTQLSPDGSAIIDI  418 (706)
T ss_dssp             TCBEEEEEETTCCCCEESCC---SSSEEEEEECTTSSEEEEE
T ss_pred             ceEEEEEEEcCCCCceeccC---CCceEEEEECCCCCEEEEE
Confidence               67777877665433211   1224456789999887765

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.65  E-value=1.9e-14  Score=143.61  Aligned_cols=227  Identities=12%  Similarity=0.075  Sum_probs=152.2

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcC-ccceEEEEccCCCCCEE-EEEe
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ-SIPLTMEWSTSPPHDYL-LAGC  200 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~-~V~~~v~~s~~~~g~~l-~sgs  200 (568)
                      .+|++++.++.|.+||+.+++.+..+.                         .++.. .+ ..++|+  |+|+++ +++.
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~-------------------------~~~~~~~~-~~~~~s--~dg~~l~v~~~   53 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVIT-------------------------IADAGPTP-MVPMVA--PGGRIAYATVN   53 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEE-------------------------CTTCTTCC-CCEEEC--TTSSEEEEEET
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEE-------------------------cCCCCCCc-cceEEc--CCCCEEEEEeC
Confidence            589999999999999999988776541                         12211 23 788998  888765 5566


Q ss_pred             CCCeEEEEEccCCCCCCCCceeEEeeC-C----CCCeeEEEEccCCCCCCCCcEEEEEc------------CCC-EEEEE
Q 008363          201 HDGTVALWKFVASDSSIDSRPLLCFSA-D----TLPIRAVSWAPAESDSDSANVILTAG------------HGG-LKFWD  262 (568)
Q Consensus       201 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~-h----~~~V~~v~~~p~~~~~~~~~~las~s------------~d~-v~lwD  262 (568)
                      .++.|.+||+.++      +.+..+.. +    ...+..++|+|++      ++|++++            .++ |.+||
T Consensus        54 ~~~~v~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~s~dg------~~l~~~~~~~~~~~~~~~~~~~~i~v~d  121 (337)
T 1pby_B           54 KSESLVKIDLVTG------ETLGRIDLSTPEERVKSLFGAALSPDG------KTLAIYESPVRLELTHFEVQPTRVALYD  121 (337)
T ss_dssp             TTTEEEEEETTTC------CEEEEEECCBTTEEEECTTCEEECTTS------SEEEEEEEEEEECSSCEEECCCEEEEEE
T ss_pred             CCCeEEEEECCCC------CeEeeEEcCCcccccccccceEECCCC------CEEEEEecccccccccccccCceEEEEE
Confidence            6899999999876      55555532 1    1257889999998      7777775            456 99999


Q ss_pred             CCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccC---------CC----CCCCCccCcc--cc-
Q 008363          263 IRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYD---------VP----ATGKPFAGTK--QQ-  326 (568)
Q Consensus       263 ~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~---------~~----~~g~~~~~~~--~~-  326 (568)
                      +.+. ..+..+.. ...+..++|+|++++|+++  ++.|++||+......         .+    ..|+.+....  .. 
T Consensus       122 ~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~  197 (337)
T 1pby_B          122 AETL-SRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGV  197 (337)
T ss_dssp             TTTT-EEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTE
T ss_pred             CCCC-cEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCc
Confidence            9876 55555543 4457889999999988888  688999998643210         00    0011000000  00 


Q ss_pred             ----------------------ceE------------EEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          327 ----------------------GLH------------LVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       327 ----------------------~l~------------~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                                            .+.            .+..+...+.+++|+|++++|+++  ++.|++||+.+++....
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~  275 (337)
T 1pby_B          198 MATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKR  275 (337)
T ss_dssp             EEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEE
T ss_pred             eeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcce
Confidence                                  011            123344567789999999998888  79999999988776544


Q ss_pred             CCCCCcceeeeecccCCCCceEEcc
Q 008363          373 HSRNRPMHFLCGSVTEDESAITVNT  397 (568)
Q Consensus       373 ~~~~~~~~~~~~s~~~~~~~i~~~~  397 (568)
                      ......+  .+..+++++..+.+..
T Consensus       276 ~~~~~~~--~~~~~s~dg~~l~~~~  298 (337)
T 1pby_B          276 VPLPHSY--YSVNVSTDGSTVWLGG  298 (337)
T ss_dssp             EECSSCC--CEEEECTTSCEEEEES
T ss_pred             ecCCCce--eeEEECCCCCEEEEEc
Confidence            3222222  3446788888777653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.64  E-value=1.7e-14  Score=167.19  Aligned_cols=235  Identities=11%  Similarity=0.099  Sum_probs=170.1

Q ss_pred             eEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccce
Q 008363          104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPL  183 (568)
Q Consensus       104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~  183 (568)
                      ..++|+|++          +.|+++. ++.|.+|++... .+..+..+..  .             .......|...+ .
T Consensus       248 ~~~~~SpDG----------~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~--~-------------~~~~~~~~~~~v-~  299 (1045)
T 1k32_A          248 YPRHLNTDG----------RRILFSK-GGSIYIFNPDTE-KIEKIEIGDL--E-------------SPEDRIISIPSK-F  299 (1045)
T ss_dssp             CEEEEEESS----------SCEEEEE-TTEEEEECTTTC-CEEECCCCCC--C-------------BCCSEEEECGGG-G
T ss_pred             ceeeEcCCC----------CEEEEEe-CCEEEEecCCce-EeeeeccCcc--c-------------cccccccccccc-c
Confidence            367999999          6788774 899999999443 3333311100  0             000002345567 8


Q ss_pred             EEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCC-CeeEEEEccCCCCCCCCcEEEEEcCCC-EE-E
Q 008363          184 TMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTL-PIRAVSWAPAESDSDSANVILTAGHGG-LK-F  260 (568)
Q Consensus       184 ~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~-~V~~v~~~p~~~~~~~~~~las~s~d~-v~-l  260 (568)
                      +++|+| |+|.+|++++ ++.|.+|++..+      . ...+..|.. .+..++|+ ++      ..|++++.+. |. +
T Consensus       300 ~~~~S~-pdG~~la~~~-~~~i~~~~~~~~------~-~~~~~~~~~~~~~~~~~s-dg------~~l~~~s~~~~l~~~  363 (1045)
T 1k32_A          300 AEDFSP-LDGDLIAFVS-RGQAFIQDVSGT------Y-VLKVPEPLRIRYVRRGGD-TK------VAFIHGTREGDFLGI  363 (1045)
T ss_dssp             EEEEEE-CGGGCEEEEE-TTEEEEECTTSS------B-EEECSCCSCEEEEEECSS-SE------EEEEEEETTEEEEEE
T ss_pred             eeeecC-CCCCEEEEEE-cCEEEEEcCCCC------c-eEEccCCCcceEEeeeEc-CC------CeEEEEECCCceEEE
Confidence            999872 3578888888 889999998755      3 334567777 89999999 88      7888888876 88 9


Q ss_pred             EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE
Q 008363          261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS  340 (568)
Q Consensus       261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~  340 (568)
                      ||+.+. .. ..+.+|...+..++|+|||++|++++.++.|++||+.        +|+..        ..+.+|...|.+
T Consensus       364 ~d~~~~-~~-~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~--------tg~~~--------~~~~~~~~~v~~  425 (1045)
T 1k32_A          364 YDYRTG-KA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE--------TGKPT--------VIERSREAMITD  425 (1045)
T ss_dssp             EETTTC-CE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT--------TCCEE--------EEEECSSSCCCC
T ss_pred             EECCCC-Cc-eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECC--------CCceE--------EeccCCCCCccc
Confidence            999865 33 3344788889999999999999999999999999994        35432        355578899999


Q ss_pred             EEEecCCCEEEEEeCCC----------eEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccCCCC
Q 008363          341 VQVSRLTGMVAYCSADG----------TVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNT  402 (568)
Q Consensus       341 l~~sp~~~~l~s~s~Dg----------~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~  402 (568)
                      ++|+|+|++|++++.++          .|++||+.++..... ..+. .......+++++..|...+.....
T Consensus       426 ~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l-~~~~-~~~~~~~~spdG~~l~~~s~~~~~  495 (1045)
T 1k32_A          426 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-TTEN-SHDYAPAFDADSKNLYYLSYRSLD  495 (1045)
T ss_dssp             EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC-SCSS-SBEEEEEECTTSCEEEEEESCCCC
T ss_pred             eEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEe-eCCC-cccCCceEcCCCCEEEEEecccCC
Confidence            99999999999888754          899999998764332 2221 223345789999988876654444

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.63  E-value=1.9e-14  Score=160.77  Aligned_cols=210  Identities=9%  Similarity=0.063  Sum_probs=140.0

Q ss_pred             eEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccce
Q 008363          104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPL  183 (568)
Q Consensus       104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~  183 (568)
                      +.++|+|++          .+|+++  ||.|++||+.++++...+..+..                     ..+.... .
T Consensus        20 ~~~~w~~dg----------~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~-~   65 (740)
T 4a5s_A           20 YSLRWISDH----------EYLYKQ--ENNILVFNAEYGNSSVFLENSTF---------------------DEFGHSI-N   65 (740)
T ss_dssp             CCEEECSSS----------EEEEEE--TTEEEEEETTTCCEEEEECTTTT---------------------TTCCSCC-C
T ss_pred             cccEECCCC----------cEEEEc--CCcEEEEECCCCceEEEEechhh---------------------hhhcccc-c
Confidence            379999999          788886  89999999999887765532210                     1111122 3


Q ss_pred             EEEEccCCCCCEEEEEeCC---------CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363          184 TMEWSTSPPHDYLLAGCHD---------GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG  254 (568)
Q Consensus       184 ~v~~s~~~~g~~l~sgs~D---------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s  254 (568)
                      .++|+  |||++|+.++.+         +.+.+||+.++      ++. .+..|...+..++|+|+|      +.||.+.
T Consensus        66 ~~~~S--pdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~------~~~-~l~~~~~~~~~~~~SPdG------~~la~~~  130 (740)
T 4a5s_A           66 DYSIS--PDGQFILLEYNYVKQWRHSYTASYDIYDLNKR------QLI-TEERIPNNTQWVTWSPVG------HKLAYVW  130 (740)
T ss_dssp             EEEEC--TTSSEEEEEEEEEECSSSCEEEEEEEEETTTT------EEC-CSSCCCTTEEEEEECSST------TCEEEEE
T ss_pred             ceEEC--CCCCEEEEEECCeeeEEEccceEEEEEECCCC------cEE-EcccCCCcceeeEECCCC------CEEEEEE
Confidence            47888  999999999876         56679999876      332 355677889999999999      7888886


Q ss_pred             CCCEEEEECCCCCcceeeeCCCCCCe-----------------EEEEEcCCCCEEEEEeCC-CcEEEEEccccccC----
Q 008363          255 HGGLKFWDIRDPFRPLWDIHPAPKFI-----------------YGLDWLPDPGCVILSFDD-GAMRIVSLLKAAYD----  312 (568)
Q Consensus       255 ~d~v~lwD~~~~~~~~~~~~~h~~~i-----------------~~l~~sp~~~~l~s~~~d-g~I~lwd~~~~~~~----  312 (568)
                      +..|++||+.++.....+..++...+                 ..+.|||||+.|+.++.| +.|.+|++......    
T Consensus       131 ~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~  210 (740)
T 4a5s_A          131 NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQY  210 (740)
T ss_dssp             TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSS
T ss_pred             CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCC
Confidence            55599999987632222333333333                 348999999999988653 32444444211100    


Q ss_pred             -------CC----------------CC---CCCccCccccceEEEe------cCCCCEEEEEEecCCCEEEEEeC----C
Q 008363          313 -------VP----------------AT---GKPFAGTKQQGLHLVN------CSSFAIWSVQVSRLTGMVAYCSA----D  356 (568)
Q Consensus       313 -------~~----------------~~---g~~~~~~~~~~l~~~~------~h~~~V~~l~~sp~~~~l~s~s~----D  356 (568)
                             -|                .+   |+..      ....+.      +|...+..++|+|+|++++....    +
T Consensus       211 ~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~  284 (740)
T 4a5s_A          211 PKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA------TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNY  284 (740)
T ss_dssp             CEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCC------CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTE
T ss_pred             CcceeecCCCCcCcCCeeEEEEEECCCCCCCCcc------eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCE
Confidence                   00                11   1100      112232      36777999999999987666543    3


Q ss_pred             CeEEEEEcCCCe
Q 008363          357 GTVHRFQLTAKA  368 (568)
Q Consensus       357 g~v~iwd~~~~~  368 (568)
                      ..|++||+.++.
T Consensus       285 ~~i~~~d~~tg~  296 (740)
T 4a5s_A          285 SVMDICDYDESS  296 (740)
T ss_dssp             EEEEEEEEETTT
T ss_pred             EEEEEEECCCCc
Confidence            479999998876

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.61  E-value=1.2e-14  Score=168.48  Aligned_cols=192  Identities=9%  Similarity=0.062  Sum_probs=155.2

Q ss_pred             eeeEEEEc-cCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcC-
Q 008363          102 VAWDVKWK-PYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ-  179 (568)
Q Consensus       102 ~v~~v~~s-p~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~-  179 (568)
                      .+.+++|+ |++          .+|++++ ++.|.+|++.++.... +                          ..|.. 
T Consensus       297 ~v~~~~~S~pdG----------~~la~~~-~~~i~~~~~~~~~~~~-~--------------------------~~~~~~  338 (1045)
T 1k32_A          297 SKFAEDFSPLDG----------DLIAFVS-RGQAFIQDVSGTYVLK-V--------------------------PEPLRI  338 (1045)
T ss_dssp             GGGEEEEEECGG----------GCEEEEE-TTEEEEECTTSSBEEE-C--------------------------SCCSCE
T ss_pred             ccceeeecCCCC----------CEEEEEE-cCEEEEEcCCCCceEE-c--------------------------cCCCcc
Confidence            34599999 999          7888887 7899999998765432 2                          44555 


Q ss_pred             ccceEEEEccCCCCCEEEEEeCCCeEE-EEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-
Q 008363          180 SIPLTMEWSTSPPHDYLLAGCHDGTVA-LWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-  257 (568)
Q Consensus       180 ~V~~~v~~s~~~~g~~l~sgs~Dg~I~-iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-  257 (568)
                      .+ ..++|+   +|+.|++++.++.|. +|++..+      .. ..+.+|...+..++|+|++      ++|++++.++ 
T Consensus       339 ~~-~~~~~s---dg~~l~~~s~~~~l~~~~d~~~~------~~-~~l~~~~~~~~~~~~SpDG------~~la~~~~~~~  401 (1045)
T 1k32_A          339 RY-VRRGGD---TKVAFIHGTREGDFLGIYDYRTG------KA-EKFEENLGNVFAMGVDRNG------KFAVVANDRFE  401 (1045)
T ss_dssp             EE-EEECSS---SEEEEEEEETTEEEEEEEETTTC------CE-EECCCCCCSEEEEEECTTS------SEEEEEETTSE
T ss_pred             eE-EeeeEc---CCCeEEEEECCCceEEEEECCCC------Cc-eEecCCccceeeeEECCCC------CEEEEECCCCe
Confidence            66 888887   788999999888888 8898755      33 3344788899999999999      8999999998 


Q ss_pred             EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCC----------cEEEEEccccccCCCCCCCCccCccccc
Q 008363          258 LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDG----------AMRIVSLLKAAYDVPATGKPFAGTKQQG  327 (568)
Q Consensus       258 v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg----------~I~lwd~~~~~~~~~~~g~~~~~~~~~~  327 (568)
                      |++||+.++ .....+.+|...+.+++|+|||++|++++.++          .|++||+..        ++         
T Consensus       402 v~~~d~~tg-~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~--------g~---------  463 (1045)
T 1k32_A          402 IMTVDLETG-KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG--------RK---------  463 (1045)
T ss_dssp             EEEEETTTC-CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT--------TE---------
T ss_pred             EEEEECCCC-ceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC--------Cc---------
Confidence            999999977 55555557888899999999999999887644          899999943        32         


Q ss_pred             eEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          328 LHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       328 l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                      +..+..|...+..++|+|+|++|++++.++...+|+...
T Consensus       464 ~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~  502 (1045)
T 1k32_A          464 IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV  502 (1045)
T ss_dssp             EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence            346777888899999999999999999988888887643

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.59  E-value=5e-14  Score=152.72  Aligned_cols=220  Identities=9%  Similarity=-0.102  Sum_probs=146.2

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeC---CCcEEEEECCC--CceeeEEeccCCccCCCCceEEEeecce
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLG---NGSLEVWEVPL--LRTMKAIYLSSMKEGTDPRFVKLEPVFR  169 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~---dg~V~iwd~~~--~~~~~~l~~~~~~~~~~~~~v~~~~~~~  169 (568)
                      ...|....++.++|+|+.           ++++++.   +...+||.+..  ......+                     
T Consensus        59 lt~~~~~~~~~~~~spd~-----------~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l---------------------  106 (582)
T 3o4h_A           59 LNREPINSVLDPHYGVGR-----------VILVRDVSKGAEQHALFKVNTSRPGEEQRL---------------------  106 (582)
T ss_dssp             CCSSCCSEECEECTTCSE-----------EEEEEECSTTSCCEEEEEEETTSTTCCEEC---------------------
T ss_pred             eecccccccccccCCCCe-----------EEEEeccCCCCcceEEEEEeccCCCccccc---------------------
Confidence            345553366699999883           7777765   55566665533  1111121                     


Q ss_pred             ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcE
Q 008363          170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV  249 (568)
Q Consensus       170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~  249 (568)
                           ..+ ..+ ...+|+|.+++..+++++.|+ +.|||+.++      .+......+ .  .+++|+|+|      ++
T Consensus       107 -----~~~-~~~-~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g------~~~~l~~~~-~--~~~~~spDG------~~  163 (582)
T 3o4h_A          107 -----EAV-KPM-RILSGVDTGEAVVFTGATEDR-VALYALDGG------GLRELARLP-G--FGFVSDIRG------DL  163 (582)
T ss_dssp             -----TTS-CSB-EEEEEEECSSCEEEEEECSSC-EEEEEEETT------EEEEEEEES-S--CEEEEEEET------TE
T ss_pred             -----cCC-CCc-eeeeeCCCCCeEEEEecCCCC-ceEEEccCC------cEEEeecCC-C--ceEEECCCC------CE
Confidence                 111 112 445777444443455555554 559999876      444433333 2  889999999      89


Q ss_pred             EEEEcCC----C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEEccccccCCCCCCCCccC
Q 008363          250 ILTAGHG----G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDG--AMRIVSLLKAAYDVPATGKPFAG  322 (568)
Q Consensus       250 las~s~d----~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg--~I~lwd~~~~~~~~~~~g~~~~~  322 (568)
                      ||+++.+    . |++||+.++ . ...+..|.+.+..++|+|||+.|+++..++  .|++||+..        |+.   
T Consensus       164 la~~~~~~~~~~~i~~~d~~~g-~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~--------~~~---  230 (582)
T 3o4h_A          164 IAGLGFFGGGRVSLFTSNLSSG-G-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD--------GSV---  230 (582)
T ss_dssp             EEEEEEEETTEEEEEEEETTTC-C-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT--------CCE---
T ss_pred             EEEEEEcCCCCeEEEEEcCCCC-C-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC--------CcE---
Confidence            9977765    6 999999876 3 335678888899999999999999888888  899999843        322   


Q ss_pred             ccccceEEEecCCCCEEEEE--------EecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceE
Q 008363          323 TKQQGLHLVNCSSFAIWSVQ--------VSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAIT  394 (568)
Q Consensus       323 ~~~~~l~~~~~h~~~V~~l~--------~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~  394 (568)
                            ..+.+|...+..++        |+|+|.++++++.||.+++|++  ++.....    ...+...+++ ++..+.
T Consensus       231 ------~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~----~~~v~~~~~s-dg~~l~  297 (582)
T 3o4h_A          231 ------EDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP----QGNHGRVVLW-RGKLVT  297 (582)
T ss_dssp             ------EECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC----SSEEEEEEEE-TTEEEE
T ss_pred             ------EEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC----CCceEEEEec-CCEEEE
Confidence                  25556666666666        9999999999999999999999  5544321    1233444566 655544


Q ss_pred             E
Q 008363          395 V  395 (568)
Q Consensus       395 ~  395 (568)
                      .
T Consensus       298 ~  298 (582)
T 3o4h_A          298 S  298 (582)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.58  E-value=3.3e-13  Score=137.33  Aligned_cols=210  Identities=10%  Similarity=-0.001  Sum_probs=138.0

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECC-CCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVP-LLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~-~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      +..++|+|++          ++|++++.+ .|.+|++. +++.......                        ..+ +..
T Consensus        42 ~~~~a~spdg----------~~l~~~~~~-~v~~~~~~~~g~~~~~~~~------------------------~~~-g~~   85 (365)
T 1jof_A           42 ISWMTFDHER----------KNIYGAAMK-KWSSFAVKSPTEIVHEASH------------------------PIG-GHP   85 (365)
T ss_dssp             CSEEEECTTS----------SEEEEEEBT-EEEEEEEEETTEEEEEEEE------------------------ECC-SSG
T ss_pred             CcEEEECCCC----------CEEEEEccc-eEEEEEECCCCCEEEeeEe------------------------ecC-CCC
Confidence            3489999999          788888887 99999997 6654432100                        111 122


Q ss_pred             ceEEEEccCCCCCE--EEEEe-------------CCCeEEEEEccCCCCCCCCceeEEee----CCCCCeeEEEEccCCC
Q 008363          182 PLTMEWSTSPPHDY--LLAGC-------------HDGTVALWKFVASDSSIDSRPLLCFS----ADTLPIRAVSWAPAES  242 (568)
Q Consensus       182 ~~~v~~s~~~~g~~--l~sgs-------------~Dg~I~iwd~~~~~~~~~~~~~~~~~----~h~~~V~~v~~~p~~~  242 (568)
                       ..++|+  |+|++  ++++.             .+|++.+|++...     ......+.    .+...+.+++|+|++ 
T Consensus        86 -~~~~~s--pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~spdG-  156 (365)
T 1jof_A           86 -RANDAD--TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET-----GKLEKNVQNYEYQENTGIHGMVFDPTE-  156 (365)
T ss_dssp             -GGGCTT--SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT-----CCEEEEEEEEECCTTCCEEEEEECTTS-
T ss_pred             -ccEEEC--CCCCEEEEEEecCCcceeccceeecCCceEEEEccCCC-----CcCcceEeeEEeCCCCcceEEEECCCC-
Confidence             567877  88884  44553             6899999999742     12222222    256679999999999 


Q ss_pred             CCCCCcEEEEEcC-CC-EEEEECC-CCCc-ceeeeC--CCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCC
Q 008363          243 DSDSANVILTAGH-GG-LKFWDIR-DPFR-PLWDIH--PAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPA  315 (568)
Q Consensus       243 ~~~~~~~las~s~-d~-v~lwD~~-~~~~-~~~~~~--~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~  315 (568)
                           ++|+++.. +. |++||+. ++.. .+..+.  .|...+..++|+|+|++|++++. ++.|.+|++..      .
T Consensus       157 -----~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~------~  225 (365)
T 1jof_A          157 -----TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP------A  225 (365)
T ss_dssp             -----SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT------T
T ss_pred             -----CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeC------C
Confidence                 77776654 45 9999998 5532 223332  24566899999999999988875 78999998743      1


Q ss_pred             CCCCccCccccceEEEe----cCCC------CEEEEE-EecCCCEEEEEeCCC------eEEEEEcC-CCeee
Q 008363          316 TGKPFAGTKQQGLHLVN----CSSF------AIWSVQ-VSRLTGMVAYCSADG------TVHRFQLT-AKAVE  370 (568)
Q Consensus       316 ~g~~~~~~~~~~l~~~~----~h~~------~V~~l~-~sp~~~~l~s~s~Dg------~v~iwd~~-~~~~~  370 (568)
                      +|+...  ..+.+..+.    +|..      .+..++ |+|+|++|++++.+.      .|.+|++. ++.+.
T Consensus       226 ~g~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~  296 (365)
T 1jof_A          226 THMPVY--THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE  296 (365)
T ss_dssp             TCCEEE--EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred             CCcEEE--ccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence            243210  000011111    2232      588999 999999887766432      89999996 45443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.54  E-value=4.2e-13  Score=137.19  Aligned_cols=195  Identities=9%  Similarity=-0.033  Sum_probs=137.6

Q ss_pred             EEEccCCCCcccccCcccEEEEEeC-CCc--EEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          106 VKWKPYNAVDCKCKQRLGYLAVLLG-NGS--LEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       106 v~~sp~~~~~~~~~~~~~~las~s~-dg~--V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      .+|+|++          +.|+.++. +|.  |.+||+.+++.....                          .++...+ 
T Consensus        41 ~~~SpDg----------~~l~~~~~~~g~~~l~~~d~~~g~~~~lt--------------------------~~~~~~~-   83 (388)
T 3pe7_A           41 KCFTRDG----------SKLLFGGAFDGPWNYYLLDLNTQVATQLT--------------------------EGRGDNT-   83 (388)
T ss_dssp             CCBCTTS----------CEEEEEECTTSSCEEEEEETTTCEEEECC--------------------------CSSCBCS-
T ss_pred             ccCCCCC----------CEEEEEEcCCCCceEEEEeCCCCceEEee--------------------------eCCCCCc-
Confidence            7899999          78888887 674  888899887655432                          3444444 


Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEE--EccCCCCCCCCcEEEEE-------
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVS--WAPAESDSDSANVILTA-------  253 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~--~~p~~~~~~~~~~las~-------  253 (568)
                      ..+.|+  |+|+.|+.++.++.|.+||+.++      +....+..+...+....  +++++      .+++..       
T Consensus        84 ~~~~~s--pdg~~l~~~~~~~~l~~~d~~~g------~~~~~~~~~~~~~~~~~~~~~~dg------~~l~~~~~~~~~~  149 (388)
T 3pe7_A           84 FGGFLS--PDDDALFYVKDGRNLMRVDLATL------EENVVYQVPAEWVGYGTWVANSDC------TKLVGIEIRREDW  149 (388)
T ss_dssp             SSCEEC--TTSSEEEEEETTTEEEEEETTTC------CEEEEEECCTTEEEEEEEEECTTS------SEEEEEEEEGGGC
T ss_pred             cceEEc--CCCCEEEEEeCCCeEEEEECCCC------cceeeeechhhcccccceeECCCC------CeeccccccCccc
Confidence            567899  89999999999999999999877      45555555666554444  47887      677642       


Q ss_pred             ---------------cCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcC-CCCEEEEEeCC------CcEEEEEccccc
Q 008363          254 ---------------GHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLP-DPGCVILSFDD------GAMRIVSLLKAA  310 (568)
Q Consensus       254 ---------------s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp-~~~~l~s~~~d------g~I~lwd~~~~~  310 (568)
                                     ..+. |.+||+.++ . ...+..+...+..++|+| ||+.|+....+      ..|.++|+..  
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g-~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~--  225 (388)
T 3pe7_A          150 VPLTDWKKFHEFYFTKPCCRLMRVDLKTG-E-STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG--  225 (388)
T ss_dssp             CCCCSHHHHHHHGGGCCCEEEEEEETTTC-C-EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS--
T ss_pred             ccccccchhhhhhccCCcceEEEEECCCC-c-eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC--
Confidence                           2335 999999976 3 233334566789999999 99999887653      3677777632  


Q ss_pred             cCCCCCCCCccCccccceEEEecCC--CCEEEEEEecCCCEEEEEeCC-C----eEEEEEcCCCeee
Q 008363          311 YDVPATGKPFAGTKQQGLHLVNCSS--FAIWSVQVSRLTGMVAYCSAD-G----TVHRFQLTAKAVE  370 (568)
Q Consensus       311 ~~~~~~g~~~~~~~~~~l~~~~~h~--~~V~~l~~sp~~~~l~s~s~D-g----~v~iwd~~~~~~~  370 (568)
                            +..         ..+..+.  ..+..++|+|+|+.|+..+.+ +    .|++||+.++...
T Consensus       226 ------~~~---------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~  277 (388)
T 3pe7_A          226 ------TNM---------RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR  277 (388)
T ss_dssp             ------CCC---------EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE
T ss_pred             ------Cce---------EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceE
Confidence                  221         2333343  357789999999877665532 2    3999999887643

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.53  E-value=5.3e-14  Score=156.51  Aligned_cols=199  Identities=14%  Similarity=0.099  Sum_probs=134.5

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeC---------CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLG---------NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML  173 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~---------dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~  173 (568)
                      +.+++|||+|          ++||+++.         ++.|++||+.+++.+...                         
T Consensus        62 ~~~~~~SpDg----------~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-------------------------  106 (719)
T 1z68_A           62 ASNYGLSPDR----------QFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN-------------------------  106 (719)
T ss_dssp             CSEEEECTTS----------SEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-------------------------
T ss_pred             eeeEEECCCC----------CeEEEEecCceeEEeecceEEEEEECCCCccccce-------------------------
Confidence            4599999999          78988876         789999999987653110                         


Q ss_pred             ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEE---------eeCCCCC---------eeEE
Q 008363          174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLC---------FSADTLP---------IRAV  235 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~---------~~~h~~~---------V~~v  235 (568)
                       . ....+ ..++|+  |+|+.||.+. |+.|++|++.++.      ....         +.+|...         ..++
T Consensus       107 -~-l~~~~-~~~~~S--PDG~~la~~~-~~~i~~~~~~~g~------~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~  174 (719)
T 1z68_A          107 -E-LPRPI-QYLCWS--PVGSKLAYVY-QNNIYLKQRPGDP------PFQITFNGRENKIFNGIPDWVYEEEMLATKYAL  174 (719)
T ss_dssp             -C-CCSSB-CCEEEC--SSTTCEEEEE-TTEEEEESSTTSC------CEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred             -e-cCccc-ccceEC--CCCCEEEEEE-CCeEEEEeCCCCC------cEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence             0 01235 789999  8999999986 7899999998662      2221         1222222         2589


Q ss_pred             EEccCCCCCCCCcEEEEEcCC-----------------------------------CEEEEECCCCCcce--------ee
Q 008363          236 SWAPAESDSDSANVILTAGHG-----------------------------------GLKFWDIRDPFRPL--------WD  272 (568)
Q Consensus       236 ~~~p~~~~~~~~~~las~s~d-----------------------------------~v~lwD~~~~~~~~--------~~  272 (568)
                      +|+|+|      ++||+++.|                                   .|++||+.++ ...        ..
T Consensus       175 ~wSPDG------~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~-~~~~~~~~~~~~~  247 (719)
T 1z68_A          175 WWSPNG------KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP-AYVGPQEVPVPAM  247 (719)
T ss_dssp             EECTTS------SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH-HHHCCEECCCCHH
T ss_pred             EECCCC------CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC-CccceeEccCCcc
Confidence            999999      888887643                                   3779999876 321        12


Q ss_pred             eCCCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEE----ccccccCCCCCCCCccCccccceE-EEecCCCCEE----
Q 008363          273 IHPAPKFIYGLDWLPDPGCVILSFDD----GAMRIVS----LLKAAYDVPATGKPFAGTKQQGLH-LVNCSSFAIW----  339 (568)
Q Consensus       273 ~~~h~~~i~~l~~sp~~~~l~s~~~d----g~I~lwd----~~~~~~~~~~~g~~~~~~~~~~l~-~~~~h~~~V~----  339 (568)
                      +.+|...+..++|+||++++++....    ..|.+||    +.        +|+..     ..+. ...+|...|.    
T Consensus       248 ~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~--------~g~~~-----~~~~~~~~~~~~~~~~~~~  314 (719)
T 1z68_A          248 IASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQ--------TWDCP-----KTQEHIEESRTGWAGGFFV  314 (719)
T ss_dssp             HHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSS--------SEECC-----GGGEEEEECSSSCSSSSSC
T ss_pred             CCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCC--------CCceE-----EEEecccccCCceEccccC
Confidence            33678889999999998877664432    2488888    52        34332     1111 1135666665    


Q ss_pred             -EEEEecCCCEEEE--EeCCC--eEEEEEcCCCe
Q 008363          340 -SVQVSRLTGMVAY--CSADG--TVHRFQLTAKA  368 (568)
Q Consensus       340 -~l~~sp~~~~l~s--~s~Dg--~v~iwd~~~~~  368 (568)
                       .+.|+|+|+.|+.  ...+|  .|++|++.++.
T Consensus       315 ~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~  348 (719)
T 1z68_A          315 STPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN  348 (719)
T ss_dssp             CCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred             CccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence             7899999985554  44555  56777776654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.52  E-value=7.4e-13  Score=134.74  Aligned_cols=206  Identities=13%  Similarity=0.003  Sum_probs=137.3

Q ss_pred             eEEEEccCCCCcccccCcccE--EEEEe-------------CCCcEEEEECCC-CceeeEEeccCCccCCCCceEEEeec
Q 008363          104 WDVKWKPYNAVDCKCKQRLGY--LAVLL-------------GNGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEPV  167 (568)
Q Consensus       104 ~~v~~sp~~~~~~~~~~~~~~--las~s-------------~dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~  167 (568)
                      ..++|+|++          ++  ++++.             .+|.+.+|++.. ++....+..              .+ 
T Consensus        86 ~~~~~spdg----------~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~--------------~~-  140 (365)
T 1jof_A           86 RANDADTNT----------RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQN--------------YE-  140 (365)
T ss_dssp             GGGCTTSCC----------EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEE--------------EE-
T ss_pred             ccEEECCCC----------CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEee--------------EE-
Confidence            378999999          63  44553             689999999974 554433210              00 


Q ss_pred             ceecccccCCcCccceEEEEccCCCCCEEEEEeC-CCeEEEEEcc-CCCCCCCCceeEEee--CCCCCeeEEEEccCCCC
Q 008363          168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH-DGTVALWKFV-ASDSSIDSRPLLCFS--ADTLPIRAVSWAPAESD  243 (568)
Q Consensus       168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~-Dg~I~iwd~~-~~~~~~~~~~~~~~~--~h~~~V~~v~~~p~~~~  243 (568)
                             ..+...+ .+++|+  |+|++|+++.. ++.|.+|++. ++..    ..+..+.  .|...+..++|+|++  
T Consensus       141 -------~~~~~~~-~~~~~s--pdG~~l~~~~~~~~~v~~~~~~~~g~~----~~~~~~~~~~~g~~p~~~~~spdg--  204 (365)
T 1jof_A          141 -------YQENTGI-HGMVFD--PTETYLYSADLTANKLWTHRKLASGEV----ELVGSVDAPDPGDHPRWVAMHPTG--  204 (365)
T ss_dssp             -------CCTTCCE-EEEEEC--TTSSEEEEEETTTTEEEEEEECTTSCE----EEEEEEECSSTTCCEEEEEECTTS--
T ss_pred             -------eCCCCcc-eEEEEC--CCCCEEEEEcCCCCEEEEEEECCCCCE----EEeeeEecCCCCCCCCEeEECCCC--
Confidence                   1233444 899999  89998887764 6899999998 4521    2333443  346679999999999  


Q ss_pred             CCCCcEEEEEcC-CC-EEEEECC--CCCcc-----eeeeC----CCCC------CeEEEE-EcCCCCEEEEEeCC-C---
Q 008363          244 SDSANVILTAGH-GG-LKFWDIR--DPFRP-----LWDIH----PAPK------FIYGLD-WLPDPGCVILSFDD-G---  299 (568)
Q Consensus       244 ~~~~~~las~s~-d~-v~lwD~~--~~~~~-----~~~~~----~h~~------~i~~l~-~sp~~~~l~s~~~d-g---  299 (568)
                          +++++++. ++ |.+|++.  ++...     +..+.    +|..      .+..++ |+|||++|+++..+ +   
T Consensus       205 ----~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~  280 (365)
T 1jof_A          205 ----NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFEL  280 (365)
T ss_dssp             ----SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTS
T ss_pred             ----CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCC
Confidence                77777665 56 9999875  33211     11221    1222      478999 99999999877542 2   


Q ss_pred             --cEEEEEccccccCCCCCCCCccCccccceE-EEecCCCCEEEEEEec---CCCEEEEEeCC-CeEEEEEcCCC
Q 008363          300 --AMRIVSLLKAAYDVPATGKPFAGTKQQGLH-LVNCSSFAIWSVQVSR---LTGMVAYCSAD-GTVHRFQLTAK  367 (568)
Q Consensus       300 --~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~-~~~~h~~~V~~l~~sp---~~~~l~s~s~D-g~v~iwd~~~~  367 (568)
                        .|.+|++..       +|+..      .+. ....+...+..++|+|   +|++|++++.+ +.|.+|++...
T Consensus       281 ~~~i~v~~~~~-------~g~~~------~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          281 QGYIAGFKLRD-------CGSIE------KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CCEEEEEEECT-------TSCEE------EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCeEEEEEECC-------CCCEE------EeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence              899999942       24321      111 2333445567889999   89999999875 89999998654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.48  E-value=2.2e-11  Score=118.94  Aligned_cols=200  Identities=9%  Similarity=0.026  Sum_probs=141.0

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      ..+++++|++          .++++...++.|.+||.. +..+..+....                    ...+|...+ 
T Consensus        32 p~~v~~~~~g----------~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~--------------------~~~~~~~~p-   79 (286)
T 1q7f_A           32 PSGVAVNAQN----------DIIVADTNNHRIQIFDKE-GRFKFQFGECG--------------------KRDSQLLYP-   79 (286)
T ss_dssp             EEEEEECTTC----------CEEEEEGGGTEEEEECTT-SCEEEEECCBS--------------------SSTTCBSSE-
T ss_pred             CceEEECCCC----------CEEEEECCCCEEEEECCC-CcEEEEecccC--------------------CCcccccCc-
Confidence            4489999998          788888889999999987 45554431100                    002334444 


Q ss_pred             eEEEEccCCCCCEEEEEeC-CCeEEEEEccCCCCCCCCceeEEee-CCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EE
Q 008363          183 LTMEWSTSPPHDYLLAGCH-DGTVALWKFVASDSSIDSRPLLCFS-ADTLPIRAVSWAPAESDSDSANVILTAGHGG-LK  259 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~  259 (568)
                      ..+++.. +++.++++... ++.|.+||.. +      ..+..+. .+...+.+|++++++      +++++...++ |.
T Consensus        80 ~~i~~~~-~~g~l~v~~~~~~~~i~~~d~~-g------~~~~~~~~~~~~~~~~i~~~~~g------~l~v~~~~~~~i~  145 (286)
T 1q7f_A           80 NRVAVVR-NSGDIIVTERSPTHQIQIYNQY-G------QFVRKFGATILQHPRGVTVDNKG------RIIVVECKVMRVI  145 (286)
T ss_dssp             EEEEEET-TTTEEEEEECGGGCEEEEECTT-S------CEEEEECTTTCSCEEEEEECTTS------CEEEEETTTTEEE
T ss_pred             eEEEEEc-CCCeEEEEcCCCCCEEEEECCC-C------cEEEEecCccCCCceEEEEeCCC------CEEEEECCCCEEE
Confidence            8888831 45655555543 8999999943 3      4455553 344678999999998      7888887777 99


Q ss_pred             EEECCCCCcceeeeC--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecC--C
Q 008363          260 FWDIRDPFRPLWDIH--PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS--S  335 (568)
Q Consensus       260 lwD~~~~~~~~~~~~--~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h--~  335 (568)
                      +||...  ..+..+.  .+...+..|+++|+|+.+++...++.|++||..         |+.        +..+..+  .
T Consensus       146 ~~~~~g--~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~---------g~~--------~~~~~~~g~~  206 (286)
T 1q7f_A          146 IFDQNG--NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE---------GQY--------LRQIGGEGIT  206 (286)
T ss_dssp             EECTTS--CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT---------CCE--------EEEESCTTTS
T ss_pred             EEcCCC--CEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC---------CCE--------EEEEccCCcc
Confidence            999753  3343332  344568999999999977777779999999972         332        2344333  3


Q ss_pred             CCEEEEEEecCCCEEEEEeCCC-eEEEEEcCCC
Q 008363          336 FAIWSVQVSRLTGMVAYCSADG-TVHRFQLTAK  367 (568)
Q Consensus       336 ~~V~~l~~sp~~~~l~s~s~Dg-~v~iwd~~~~  367 (568)
                      ..+..++++++|.++++...++ .|.+|+....
T Consensus       207 ~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~  239 (286)
T 1q7f_A          207 NYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ  239 (286)
T ss_dssp             CSEEEEEECTTCCEEEEECSSSCEEEEECTTSC
T ss_pred             CCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC
Confidence            5789999999999888888886 9999997543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.47  E-value=2.1e-11  Score=119.07  Aligned_cols=191  Identities=9%  Similarity=0.088  Sum_probs=136.8

Q ss_pred             eeEEEEc-cCCCCcccccCcccEEEEEeC-CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCc
Q 008363          103 AWDVKWK-PYNAVDCKCKQRLGYLAVLLG-NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQS  180 (568)
Q Consensus       103 v~~v~~s-p~~~~~~~~~~~~~~las~s~-dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~  180 (568)
                      +..+++. +++          .++++... ++.|.+|+ .+++.+..+.                         ..+...
T Consensus        79 p~~i~~~~~~g----------~l~v~~~~~~~~i~~~d-~~g~~~~~~~-------------------------~~~~~~  122 (286)
T 1q7f_A           79 PNRVAVVRNSG----------DIIVTERSPTHQIQIYN-QYGQFVRKFG-------------------------ATILQH  122 (286)
T ss_dssp             EEEEEEETTTT----------EEEEEECGGGCEEEEEC-TTSCEEEEEC-------------------------TTTCSC
T ss_pred             ceEEEEEcCCC----------eEEEEcCCCCCEEEEEC-CCCcEEEEec-------------------------CccCCC
Confidence            4589994 666          55555533 89999999 5556554431                         122233


Q ss_pred             cceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee--CCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-
Q 008363          181 IPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS--ADTLPIRAVSWAPAESDSDSANVILTAGHGG-  257 (568)
Q Consensus       181 V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~--~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-  257 (568)
                      + .++++.  ++|+++++...++.|.+||...       ..+..+.  .+...+..|++++++      +++++...++ 
T Consensus       123 ~-~~i~~~--~~g~l~v~~~~~~~i~~~~~~g-------~~~~~~~~~~~~~~p~~i~~~~~g------~l~v~~~~~~~  186 (286)
T 1q7f_A          123 P-RGVTVD--NKGRIIVVECKVMRVIIFDQNG-------NVLHKFGCSKHLEFPNGVVVNDKQ------EIFISDNRAHC  186 (286)
T ss_dssp             E-EEEEEC--TTSCEEEEETTTTEEEEECTTS-------CEEEEEECTTTCSSEEEEEECSSS------EEEEEEGGGTE
T ss_pred             c-eEEEEe--CCCCEEEEECCCCEEEEEcCCC-------CEEEEeCCCCccCCcEEEEECCCC------CEEEEECCCCE
Confidence            3 889988  7888888888889999999652       3444443  445678999999998      7888877777 


Q ss_pred             EEEEECCCCCcceeeeCCC--CCCeEEEEEcCCCCEEEEEeCCC-cEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363          258 LKFWDIRDPFRPLWDIHPA--PKFIYGLDWLPDPGCVILSFDDG-AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS  334 (568)
Q Consensus       258 v~lwD~~~~~~~~~~~~~h--~~~i~~l~~sp~~~~l~s~~~dg-~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h  334 (568)
                      |++||...  ..+..+..+  ...+..|+++|+|+++++...++ .|.+||.         .|+.        +..+..+
T Consensus       187 i~~~~~~g--~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~---------~g~~--------~~~~~~~  247 (286)
T 1q7f_A          187 VKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ---------DGQL--------ISALESK  247 (286)
T ss_dssp             EEEEETTC--CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT---------TSCE--------EEEEEES
T ss_pred             EEEEcCCC--CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC---------CCCE--------EEEEccc
Confidence            99999854  344445332  35789999999998888877775 9999996         2433        2445444


Q ss_pred             C--CCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          335 S--FAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       335 ~--~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      .  ..+.+++++|+|.++++ +.|+.|++|++.
T Consensus       248 ~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~  279 (286)
T 1q7f_A          248 VKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV  279 (286)
T ss_dssp             SCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred             CCCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence            3  34789999999987777 679999999984

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.47  E-value=3.2e-12  Score=130.63  Aligned_cols=232  Identities=8%  Similarity=0.018  Sum_probs=146.0

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      .+..+.|+|++          +.|+.++.++.|++||+.+++....+                          ..+...+
T Consensus        82 ~~~~~~~spdg----------~~l~~~~~~~~l~~~d~~~g~~~~~~--------------------------~~~~~~~  125 (388)
T 3pe7_A           82 NTFGGFLSPDD----------DALFYVKDGRNLMRVDLATLEENVVY--------------------------QVPAEWV  125 (388)
T ss_dssp             CSSSCEECTTS----------SEEEEEETTTEEEEEETTTCCEEEEE--------------------------ECCTTEE
T ss_pred             CccceEEcCCC----------CEEEEEeCCCeEEEEECCCCcceeee--------------------------echhhcc
Confidence            33367899999          79999999999999999997765443                          1222222


Q ss_pred             ceEEEEccCCCCCEEEEE----------------------eCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEcc
Q 008363          182 PLTMEWSTSPPHDYLLAG----------------------CHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAP  239 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sg----------------------s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p  239 (568)
                       ....|...+++.+++..                      ..+..|.+||+.++      .. ..+..+...+..++|+|
T Consensus       126 -~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g------~~-~~l~~~~~~~~~~~~sp  197 (388)
T 3pe7_A          126 -GYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG------ES-TVILQENQWLGHPIYRP  197 (388)
T ss_dssp             -EEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC------CE-EEEEEESSCEEEEEEET
T ss_pred             -cccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC------ce-EEeecCCccccccEECC
Confidence             33444334888887743                      24578999999866      33 33335567799999999


Q ss_pred             -CCCCCCCCcEEEEEcC------CC-EEEEECCCCCcceeeeCCCC--CCeEEEEEcCCCCEEEEEeC-CC----cEEEE
Q 008363          240 -AESDSDSANVILTAGH------GG-LKFWDIRDPFRPLWDIHPAP--KFIYGLDWLPDPGCVILSFD-DG----AMRIV  304 (568)
Q Consensus       240 -~~~~~~~~~~las~s~------d~-v~lwD~~~~~~~~~~~~~h~--~~i~~l~~sp~~~~l~s~~~-dg----~I~lw  304 (568)
                       ++      ..|+.+..      .. |.++|+...  ....+..+.  ..+..++|+|||+.|+..+. ++    .|++|
T Consensus       198 ~dg------~~l~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  269 (388)
T 3pe7_A          198 YDD------STVAFCHEGPHDLVDARMWLINEDGT--NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSA  269 (388)
T ss_dssp             TEE------EEEEEEECSCTTTSSCSEEEEETTSC--CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEE
T ss_pred             CCC------CEEEEEEecCCCCCcceEEEEeCCCC--ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEE
Confidence             88      77776654      23 888887654  233343343  25788999999998866543 22    39999


Q ss_pred             EccccccCCCCCCCCccCccccceEEEecCCCC---EEEEEEecCCCEEEEE---------eCCCeEEEEEcCCCeeecc
Q 008363          305 SLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFA---IWSVQVSRLTGMVAYC---------SADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       305 d~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~---V~~l~~sp~~~~l~s~---------s~Dg~v~iwd~~~~~~~~~  372 (568)
                      |+..        |+.      ..+..+.++...   ...+.|+|+|+.|+..         ..+..|++||+.++....-
T Consensus       270 d~~~--------g~~------~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l  335 (388)
T 3pe7_A          270 DPET--------LEN------RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRV  335 (388)
T ss_dssp             CTTT--------CCE------EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEE
T ss_pred             ecCC--------Cce------EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEe
Confidence            9943        432      222333331111   1123799999877754         4567899999998765432


Q ss_pred             CCCCC---------cceeeeecccCCCCceEEcccC
Q 008363          373 HSRNR---------PMHFLCGSVTEDESAITVNTPL  399 (568)
Q Consensus       373 ~~~~~---------~~~~~~~s~~~~~~~i~~~~~~  399 (568)
                      .....         .....+.++++++..|.+.+..
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~  371 (388)
T 3pe7_A          336 ARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV  371 (388)
T ss_dssp             EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred             ccccCcccccccccccCCCCccCCCCCCEEEEEecC
Confidence            11111         0013344788999888776543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.47  E-value=1.2e-11  Score=123.85  Aligned_cols=222  Identities=10%  Similarity=0.026  Sum_probs=149.5

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCC------------------------CcEEEEECCCCceeeEEeccCCccCC
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGN------------------------GSLEVWEVPLLRTMKAIYLSSMKEGT  157 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~d------------------------g~V~iwd~~~~~~~~~l~~~~~~~~~  157 (568)
                      .+.+|+++|++          +++++...+                        +.|.+||..+++.+..+.        
T Consensus        25 ~v~~va~d~~G----------~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~--------   86 (329)
T 3fvz_A           25 QVSGVALDSKN----------NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG--------   86 (329)
T ss_dssp             CEEEEEECTTC----------CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC--------
T ss_pred             CceEEEECCCC----------CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC--------
Confidence            45599999999          788888877                        468888887776654330        


Q ss_pred             CCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe---------eCC
Q 008363          158 DPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF---------SAD  228 (568)
Q Consensus       158 ~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~---------~~h  228 (568)
                                       .++... |..|+++  ++|+++++...++.|++||....     ...+..+         .++
T Consensus        87 -----------------~~~~~~-p~gia~d--~~g~l~v~d~~~~~v~~~~~~g~-----~~~~~~~~~~~~~g~~~~~  141 (329)
T 3fvz_A           87 -----------------KNLFYL-PHGLSID--TDGNYWVTDVALHQVFKLDPHSK-----EGPLLILGRSMQPGSDQNH  141 (329)
T ss_dssp             -----------------TTTCSS-EEEEEEC--TTSCEEEEETTTTEEEEECTTCS-----SCCSEEESBTTBCCCSTTC
T ss_pred             -----------------CCccCC-ceEEEEC--CCCCEEEEECCCCEEEEEeCCCC-----eEEEEEecccCCCCCCccc
Confidence                             123333 3889988  88998899888999999997643     1144444         244


Q ss_pred             CCCeeEEEEcc-CCCCCCCCcEEEEEc-CCC-EEEEECCCCCcceeeeCC----------CCCCeEEEEEcCC-CCEEEE
Q 008363          229 TLPIRAVSWAP-AESDSDSANVILTAG-HGG-LKFWDIRDPFRPLWDIHP----------APKFIYGLDWLPD-PGCVIL  294 (568)
Q Consensus       229 ~~~V~~v~~~p-~~~~~~~~~~las~s-~d~-v~lwD~~~~~~~~~~~~~----------h~~~i~~l~~sp~-~~~l~s  294 (568)
                      ......|+|+| ++      .++++.+ .++ |++||.. + ..+..+..          +-.....|+++|+ +..+++
T Consensus       142 ~~~P~~ia~~~~~g------~lyv~d~~~~~~I~~~~~~-g-~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~  213 (329)
T 3fvz_A          142 FCQPTDVAVEPSTG------AVFVSDGYCNSRIVQFSPS-G-KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVA  213 (329)
T ss_dssp             CSSEEEEEECTTTC------CEEEEECSSCCEEEEECTT-S-CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEE
T ss_pred             cCCCcEEEEeCCCC------eEEEEeCCCCCeEEEEcCC-C-CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEE
Confidence            55789999999 67      7888886 566 9999954 3 44444421          2234789999999 666666


Q ss_pred             EeCCCcEEEEEccccccCCCCCCCCccCccccceEEE--ecCCCCEEEEEEecCCCEEEEE-------eCCCeEEEEEcC
Q 008363          295 SFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV--NCSSFAIWSVQVSRLTGMVAYC-------SADGTVHRFQLT  365 (568)
Q Consensus       295 ~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~--~~h~~~V~~l~~sp~~~~l~s~-------s~Dg~v~iwd~~  365 (568)
                      ...++.|++||..        +|+.+        ..+  ..+...+..++|+| +..+++.       ..+..|++|++.
T Consensus       214 d~~~~~I~~~~~~--------~G~~~--------~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~  276 (329)
T 3fvz_A          214 DRENGRIQCFKTD--------TKEFV--------REIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFS  276 (329)
T ss_dssp             ETTTTEEEEEETT--------TCCEE--------EEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETT
T ss_pred             ECCCCEEEEEECC--------CCcEE--------EEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcC
Confidence            6778999999984        35443        344  34566788999999 4333333       344589999998


Q ss_pred             CCeeeccCC--CCCcceeeeecccCCCC
Q 008363          366 AKAVEKDHS--RNRPMHFLCGSVTEDES  391 (568)
Q Consensus       366 ~~~~~~~~~--~~~~~~~~~~s~~~~~~  391 (568)
                      ++.+.....  ..........++++++.
T Consensus       277 ~g~~~~~~~~~~~~~~~p~~ia~~~dG~  304 (329)
T 3fvz_A          277 SGEIIDVFKPVRKHFDMPHDIVASEDGT  304 (329)
T ss_dssp             TCCEEEEECCSSSCCSSEEEEEECTTSE
T ss_pred             CCeEEEEEcCCCCccCCeeEEEECCCCC
Confidence            887665432  11111222335667773

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.46  E-value=4.5e-12  Score=139.48  Aligned_cols=215  Identities=11%  Similarity=0.051  Sum_probs=141.9

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEE--eCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVL--LGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSM  172 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~--s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~  172 (568)
                      ..+|.. .+..++|+++.          -++++.  +.++...||....+.....+                        
T Consensus        19 ~~~~~~-~~~~~~~s~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~l------------------------   63 (662)
T 3azo_A           19 VASRSG-RPACVGAVGDE----------VWWVAPRPAEAGRATLVRRRADGAEESA------------------------   63 (662)
T ss_dssp             HHHTCS-CCEEEEEETTE----------EEEEEEETTTTTEEEEEEECTTSCEEES------------------------
T ss_pred             HhhcCC-ccceeEEcCCe----------EEEEecCcccCCcEEEEEECCCCCccee------------------------
Confidence            346777 55699999876          566666  55889999996443334333                        


Q ss_pred             cccCCcCcc--------ceEEEEccCCCCCE-EEEEeC-CCeEEEEEcc--C-CCCCCCCceeEEeeC-----CCCCeeE
Q 008363          173 LKCGGTQSI--------PLTMEWSTSPPHDY-LLAGCH-DGTVALWKFV--A-SDSSIDSRPLLCFSA-----DTLPIRA  234 (568)
Q Consensus       173 ~~~~h~~~V--------~~~v~~s~~~~g~~-l~sgs~-Dg~I~iwd~~--~-~~~~~~~~~~~~~~~-----h~~~V~~  234 (568)
                        ..|...+        +..+.|+.+|||+. |+.++. +..|.+|++.  . +      . ...+..     |...+.+
T Consensus        64 --~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~------~-~~~l~~~~~~~~~~~~~~  134 (662)
T 3azo_A           64 --LPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGA------V-PRPLTPVSAVGGGLRWAD  134 (662)
T ss_dssp             --SCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCC------C-CEECSCCCCSTTCEEEEE
T ss_pred             --CCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCC------C-CEeccCCccCCCCccccC
Confidence              2222222        02456654478888 776654 4566666654  2 3      2 233333     6677899


Q ss_pred             EEEccCCCCCCCCcEEEEEcCC----------C-EEEEECCCCC----cceeeeC-CCCCCeEEEEEcCCCCEEEEEeCC
Q 008363          235 VSWAPAESDSDSANVILTAGHG----------G-LKFWDIRDPF----RPLWDIH-PAPKFIYGLDWLPDPGCVILSFDD  298 (568)
Q Consensus       235 v~~~p~~~~~~~~~~las~s~d----------~-v~lwD~~~~~----~~~~~~~-~h~~~i~~l~~sp~~~~l~s~~~d  298 (568)
                      ++|+|+|      +.|++++.+          . |++||+.+..    .....+. .+...+..++|+|||++|+.++.+
T Consensus       135 ~~~spDg------~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~  208 (662)
T 3azo_A          135 PVLLPER------GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWD  208 (662)
T ss_dssp             EEEETTT------TEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEEC
T ss_pred             cEECCCC------CEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECC
Confidence            9999999      788887765          5 9999998721    1233444 555678889999999999988754


Q ss_pred             --------CcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCC--eEEEEEcCCCe
Q 008363          299 --------GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADG--TVHRFQLTAKA  368 (568)
Q Consensus       299 --------g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg--~v~iwd~~~~~  368 (568)
                              ..|++||+..       +|...     .......+|...+..+.|+|+|+++++++.|+  .|++|++.++.
T Consensus       209 ~~~~~~~~~~i~~~d~~~-------~g~~~-----~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~  276 (662)
T 3azo_A          209 HPRMPWEGTELKTARVTE-------DGRFA-----DTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA  276 (662)
T ss_dssp             TTCCTTTCEEEEEEEECT-------TSCEE-----EEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC
T ss_pred             CCCCCCCCcEEEEEEECC-------CCccc-----ccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc
Confidence                    3799999941       23110     11123345678899999999999888888888  66777765665


Q ss_pred             eec
Q 008363          369 VEK  371 (568)
Q Consensus       369 ~~~  371 (568)
                      ...
T Consensus       277 ~~~  279 (662)
T 3azo_A          277 ATQ  279 (662)
T ss_dssp             EEE
T ss_pred             eee
Confidence            443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.46  E-value=1.7e-11  Score=136.08  Aligned_cols=228  Identities=10%  Similarity=0.040  Sum_probs=151.4

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCC-----cEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNG-----SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG  176 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg-----~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~  176 (568)
                      .+..++|||+|          ++||.++.++     .|++||+.+++.....                          ..
T Consensus       126 ~~~~~~~SPDg----------~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~--------------------------~~  169 (710)
T 2xdw_A          126 ALRGYAFSEDG----------EYFAYGLSASGSDWVTIKFMKVDGAKELPDV--------------------------LE  169 (710)
T ss_dssp             EEEEEEECTTS----------SEEEEEEEETTCSCEEEEEEETTTTEEEEEE--------------------------EE
T ss_pred             EEEEEEECCCC----------CEEEEEEcCCCCceEEEEEEECCCCCCCccc--------------------------cc
Confidence            45689999999          7888776544     8999999998766432                          11


Q ss_pred             CcCccceEEEEccCCCCCEEEEEeCCCe----------------EEEEEccCCCCCCCCceeEEee--CCCCCeeEEEEc
Q 008363          177 GTQSIPLTMEWSTSPPHDYLLAGCHDGT----------------VALWKFVASDSSIDSRPLLCFS--ADTLPIRAVSWA  238 (568)
Q Consensus       177 h~~~V~~~v~~s~~~~g~~l~sgs~Dg~----------------I~iwd~~~~~~~~~~~~~~~~~--~h~~~V~~v~~~  238 (568)
                      +. .+ ..++|+  |||+.|+.++.++.                |++|++.++..    .....+.  .|...+..+.|+
T Consensus       170 ~~-~~-~~~~ws--pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~----~~~~v~~~~~~~~~~~~~~~S  241 (710)
T 2xdw_A          170 RV-KF-SCMAWT--HDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS----EDILCAEFPDEPKWMGGAELS  241 (710)
T ss_dssp             EE-CS-CCEEEC--TTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG----GCEEEECCTTCTTCEEEEEEC
T ss_pred             Cc-cc-ceEEEE--eCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcc----cceEEeccCCCCeEEEEEEEc
Confidence            11 14 678999  89999999988876                99999986521    2223333  355668899999


Q ss_pred             cCCCCCCCCcEEEEEcC-----CC-EEEEECCC------CCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCC----CcEE
Q 008363          239 PAESDSDSANVILTAGH-----GG-LKFWDIRD------PFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDD----GAMR  302 (568)
Q Consensus       239 p~~~~~~~~~~las~s~-----d~-v~lwD~~~------~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d----g~I~  302 (568)
                      |++      ++|+.++.     +. |++||+.+      +......+..+...+.. .|+|+|..|+..+..    +.|.
T Consensus       242 pDg------~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~  314 (710)
T 2xdw_A          242 DDG------RYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLI  314 (710)
T ss_dssp             TTS------CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEE
T ss_pred             CCC------CEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEE
Confidence            999      77776543     45 99999986      42244555566665654 488999988877653    3699


Q ss_pred             EEEccccccCCCCCCCCccCccccceEEEecCCC--CEEEEEEecCCCEEEEEeCCCe--EEEEEcCCCeeeccCCCCCc
Q 008363          303 IVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSF--AIWSVQVSRLTGMVAYCSADGT--VHRFQLTAKAVEKDHSRNRP  378 (568)
Q Consensus       303 lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~--~V~~l~~sp~~~~l~s~s~Dg~--v~iwd~~~~~~~~~~~~~~~  378 (568)
                      +||+..        +..      .....+..|..  .+..++|++++.++++...|+.  |++|++.++...+..... .
T Consensus       315 ~~d~~~--------~~~------~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~-~  379 (710)
T 2xdw_A          315 NIDFTD--------PEE------SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE-V  379 (710)
T ss_dssp             EEETTS--------CCG------GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC-S
T ss_pred             EEeCCC--------CCc------ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC-C
Confidence            999843        211      11234555544  6888999987888889988985  566677555433322221 2


Q ss_pred             ceeeeecccCCCCceEE
Q 008363          379 MHFLCGSVTEDESAITV  395 (568)
Q Consensus       379 ~~~~~~s~~~~~~~i~~  395 (568)
                      ......++++++..+.+
T Consensus       380 ~~v~~~~~s~d~~~l~~  396 (710)
T 2xdw_A          380 GSVVGYSGQKKDTEIFY  396 (710)
T ss_dssp             SEEEEEECCTTCSEEEE
T ss_pred             ceEEEEecCCCCCEEEE
Confidence            23333355666665554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.42  E-value=1.4e-10  Score=115.94  Aligned_cols=240  Identities=6%  Similarity=-0.043  Sum_probs=152.0

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC  175 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~  175 (568)
                      ..+.. ...+++|+|++          .+++++..++.|.+||..+++....+                          .
T Consensus        41 ~~~~~-~~~~~~~~~~g----------~l~~~~~~~~~i~~~d~~~~~~~~~~--------------------------~   83 (333)
T 2dg1_A           41 SKKGL-QLEGLNFDRQG----------QLFLLDVFEGNIFKINPETKEIKRPF--------------------------V   83 (333)
T ss_dssp             ESSCC-CEEEEEECTTS----------CEEEEETTTCEEEEECTTTCCEEEEE--------------------------E
T ss_pred             eccCc-cccCcEECCCC----------CEEEEECCCCEEEEEeCCCCcEEEEe--------------------------e
Confidence            34444 34599999998          77778888999999999886654322                          1


Q ss_pred             CCcCccceEEEEccCCCCCEEEEEeCC----CeEEEEEccCCCCCCCCceeEEee--CCCCCeeEEEEccCCCCCCCCcE
Q 008363          176 GGTQSIPLTMEWSTSPPHDYLLAGCHD----GTVALWKFVASDSSIDSRPLLCFS--ADTLPIRAVSWAPAESDSDSANV  249 (568)
Q Consensus       176 ~h~~~V~~~v~~s~~~~g~~l~sgs~D----g~I~iwd~~~~~~~~~~~~~~~~~--~h~~~V~~v~~~p~~~~~~~~~~  249 (568)
                      .+...+ .+++|+  ++|.+++++..+    +.|.+||..+.      .....+.  .+...+.+++++|++      .+
T Consensus        84 ~~~~~~-~~i~~~--~dg~l~v~~~~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~~~~~~i~~d~~g------~l  148 (333)
T 2dg1_A           84 SHKANP-AAIKIH--KDGRLFVCYLGDFKSTGGIFAATENGD------NLQDIIEDLSTAYCIDDMVFDSKG------GF  148 (333)
T ss_dssp             CSSSSE-EEEEEC--TTSCEEEEECTTSSSCCEEEEECTTSC------SCEEEECSSSSCCCEEEEEECTTS------CE
T ss_pred             CCCCCc-ceEEEC--CCCcEEEEeCCCCCCCceEEEEeCCCC------EEEEEEccCccCCcccceEECCCC------CE
Confidence            233455 899998  888888777766    68999998765      2222222  245679999999998      78


Q ss_pred             EEEEcC------CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCCCCCCcc
Q 008363          250 ILTAGH------GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPATGKPFA  321 (568)
Q Consensus       250 las~s~------d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g~~~~  321 (568)
                      +++...      .+ |..||..+. . +..+..+...+..++|+|+++.|+.+ +.++.|++||+..       .|..+.
T Consensus       149 ~v~~~~~~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~-------~g~~~~  219 (333)
T 2dg1_A          149 YFTDFRGYSTNPLGGVYYVSPDFR-T-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED-------DGVTIQ  219 (333)
T ss_dssp             EEEECCCBTTBCCEEEEEECTTSC-C-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT-------TSSSEE
T ss_pred             EEEeccccccCCCceEEEEeCCCC-E-EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC-------CCcCcc
Confidence            887764      23 777776543 2 22222223457899999999877655 4578999999842       122210


Q ss_pred             CccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCc-----ceeeeecccCCCCceEEc
Q 008363          322 GTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRP-----MHFLCGSVTEDESAITVN  396 (568)
Q Consensus       322 ~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~~i~~~  396 (568)
                      .........+.++ ..+..++++++|.++++...++.|.+||.....+.. ......     ....+.++++++..|.+.
T Consensus       220 ~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~-~~~~~~~~g~~~~~~~~~~~~dg~~L~v~  297 (333)
T 2dg1_A          220 PFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQ-ILIPGRDEGHMLRSTHPQFIPGTNQLIIC  297 (333)
T ss_dssp             EEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEE-EECTTGGGTCSCBCCEEEECTTSCEEEEE
T ss_pred             cccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCCCEEEE-EEcCCCccccccCcceEEECCCCCEEEEE
Confidence            0000000111222 467889999999988888888999999985433222 111110     012233455676666655


Q ss_pred             cc
Q 008363          397 TP  398 (568)
Q Consensus       397 ~~  398 (568)
                      +.
T Consensus       298 ~~  299 (333)
T 2dg1_A          298 SN  299 (333)
T ss_dssp             EE
T ss_pred             eC
Confidence            43

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.42  E-value=8.4e-11  Score=118.98  Aligned_cols=194  Identities=9%  Similarity=-0.005  Sum_probs=122.3

Q ss_pred             eEEEEccCCCCCEEEEEeCC----CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc-CCC
Q 008363          183 LTMEWSTSPPHDYLLAGCHD----GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG-HGG  257 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~D----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s-~d~  257 (568)
                      ..++|+  |+|++|++++.+    +.|.+|++.....  ....+.....+......+++  ++      .+|++++ .++
T Consensus        53 ~~l~~s--pdg~~l~~~~~~~~~~~~v~~~~~~~~~g--~~~~~~~~~~~~~~p~~~~~--dg------~~l~~~~~~~~  120 (361)
T 3scy_A           53 SYLIPS--ADGKFVYSVNEFSKDQAAVSAFAFDKEKG--TLHLLNTQKTMGADPCYLTT--NG------KNIVTANYSGG  120 (361)
T ss_dssp             CSEEEC--TTSSEEEEEECCSSTTCEEEEEEEETTTT--EEEEEEEEECSSSCEEEEEE--CS------SEEEEEETTTT
T ss_pred             ceEEEC--CCCCEEEEEEccCCCCCcEEEEEEeCCCC--cEEEeeEeccCCCCcEEEEE--CC------CEEEEEECCCC
Confidence            789999  899999999886    8999999875310  12344455556667788888  55      5555555 566


Q ss_pred             -EEEEECCCCCcc--e-e--eeC--------CCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCC----C
Q 008363          258 -LKFWDIRDPFRP--L-W--DIH--------PAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATG----K  318 (568)
Q Consensus       258 -v~lwD~~~~~~~--~-~--~~~--------~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g----~  318 (568)
                       |.+|++......  + .  ...        .+...+.+++|+|+|++|++++. ++.|++|++....      +    +
T Consensus       121 ~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~------~~~~~~  194 (361)
T 3scy_A          121 SITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNA------NADNKE  194 (361)
T ss_dssp             EEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTC------CTTTCC
T ss_pred             EEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCC------Cccccc
Confidence             999999754211  1 1  111        11234588999999998877665 8899999985411      2    1


Q ss_pred             -CccCccccceEEEecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEEcCCCeeeccCC----CCCcceeeeecccCCCCc
Q 008363          319 -PFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCS-ADGTVHRFQLTAKAVEKDHS----RNRPMHFLCGSVTEDESA  392 (568)
Q Consensus       319 -~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~~~~~~~~~----~~~~~~~~~~s~~~~~~~  392 (568)
                       +.. .. ........+...+..++|+|+|++|++++ .++.|.+|++.++.+.....    ...........+++++..
T Consensus       195 ~l~~-~~-~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~  272 (361)
T 3scy_A          195 KFLT-KG-TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKY  272 (361)
T ss_dssp             CCEE-EE-EEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSE
T ss_pred             ceee-cc-cccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCE
Confidence             100 00 00011223445678999999999887777 68999999998765432111    000111234467888877


Q ss_pred             eEEc
Q 008363          393 ITVN  396 (568)
Q Consensus       393 i~~~  396 (568)
                      +.+.
T Consensus       273 l~v~  276 (361)
T 3scy_A          273 LYAS  276 (361)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6553

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.39  E-value=4.9e-12  Score=141.17  Aligned_cols=200  Identities=10%  Similarity=0.076  Sum_probs=135.5

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCC---------CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGN---------GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC  175 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~d---------g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~  175 (568)
                      ++.|||++          ++|+.++.+         +.+.|||+.+++... +                          .
T Consensus        66 ~~~~Spdg----------~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l--------------------------~  108 (740)
T 4a5s_A           66 DYSISPDG----------QFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-E--------------------------E  108 (740)
T ss_dssp             EEEECTTS----------SEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-S--------------------------S
T ss_pred             ceEECCCC----------CEEEEEECCeeeEEEccceEEEEEECCCCcEEE-c--------------------------c
Confidence            58899999          789988876         566799999976542 2                          4


Q ss_pred             CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeE-EeeCCCCCe-----------------eEEEE
Q 008363          176 GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLL-CFSADTLPI-----------------RAVSW  237 (568)
Q Consensus       176 ~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~~V-----------------~~v~~  237 (568)
                      .|...+ ..++|+  |||+.||.+. |+.|.+|++.++.      ..+ +..++...+                 ..+.|
T Consensus       109 ~~~~~~-~~~~~S--PdG~~la~~~-~~~i~~~~~~~~~------~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w  178 (740)
T 4a5s_A          109 RIPNNT-QWVTWS--PVGHKLAYVW-NNDIYVKIEPNLP------SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWW  178 (740)
T ss_dssp             CCCTTE-EEEEEC--SSTTCEEEEE-TTEEEEESSTTSC------CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEE
T ss_pred             cCCCcc-eeeEEC--CCCCEEEEEE-CCeEEEEECCCCc------eEEEcCCCCccceecCcccccccchhcCCCcceEE
Confidence            556677 899999  9999999885 7899999998662      222 122222222                 35899


Q ss_pred             ccCCCCCCCCcEEEEEcCC-------------------------------------CEEEEECCC---CCc-ceeeeC--
Q 008363          238 APAESDSDSANVILTAGHG-------------------------------------GLKFWDIRD---PFR-PLWDIH--  274 (568)
Q Consensus       238 ~p~~~~~~~~~~las~s~d-------------------------------------~v~lwD~~~---~~~-~~~~~~--  274 (568)
                      +|+|      +.||.++.|                                     .|++||+.+   +.. ....+.  
T Consensus       179 SpDg------~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~  252 (740)
T 4a5s_A          179 SPNG------TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP  252 (740)
T ss_dssp             CTTS------SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred             CCCC------CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence            9999      788876421                                     167788876   421 222332  


Q ss_pred             ----CCCCCeEEEEEcCCCCEEEEEeC----CCcEEEEEccccccCCCCCCC----CccCccccceEEE--ecCCCCEE-
Q 008363          275 ----PAPKFIYGLDWLPDPGCVILSFD----DGAMRIVSLLKAAYDVPATGK----PFAGTKQQGLHLV--NCSSFAIW-  339 (568)
Q Consensus       275 ----~h~~~i~~l~~sp~~~~l~s~~~----dg~I~lwd~~~~~~~~~~~g~----~~~~~~~~~l~~~--~~h~~~V~-  339 (568)
                          +|...+..++|+|||+.++....    +..|++||+.        +|+    +.      .+..+  ..|...|. 
T Consensus       253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~--------tg~~~~~~~------~~~~l~~~~~~~~v~~  318 (740)
T 4a5s_A          253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD--------ESSGRWNCL------VARQHIEMSTTGWVGR  318 (740)
T ss_dssp             HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEE--------TTTTEEEEC------GGGCEEEECSSSCSSS
T ss_pred             ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECC--------CCcccccee------EEEEeeeccCCceEcc
Confidence                37778999999999997766533    3479999984        344    11      01111  44554443 


Q ss_pred             ----EEEEecCCCEEE-EEeC-C--CeEEEEEcCCCeeec
Q 008363          340 ----SVQVSRLTGMVA-YCSA-D--GTVHRFQLTAKAVEK  371 (568)
Q Consensus       340 ----~l~~sp~~~~l~-s~s~-D--g~v~iwd~~~~~~~~  371 (568)
                          .+.|+|+|+.|+ ..+. +  ..|++|++.++...+
T Consensus       319 ~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~  358 (740)
T 4a5s_A          319 FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF  358 (740)
T ss_dssp             SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE
T ss_pred             CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe
Confidence                688999998777 6653 3  458888887765443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.39  E-value=1.1e-10  Score=114.66  Aligned_cols=224  Identities=8%  Similarity=-0.065  Sum_probs=147.4

Q ss_pred             eeeEEEEccCCCCcccccCccc-EEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLG-YLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQS  180 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~-~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~  180 (568)
                      ....++|+|++          + +++++..++.|.+|+..++  ...+                          ..+...
T Consensus        29 ~~eg~~~d~~g----------~~l~~~~~~~~~i~~~~~~~~--~~~~--------------------------~~~~~~   70 (296)
T 3e5z_A           29 WTEGPVYVPAR----------SAVIFSDVRQNRTWAWSDDGQ--LSPE--------------------------MHPSHH   70 (296)
T ss_dssp             SEEEEEEEGGG----------TEEEEEEGGGTEEEEEETTSC--EEEE--------------------------ESSCSS
T ss_pred             cccCCeEeCCC----------CEEEEEeCCCCEEEEEECCCC--eEEE--------------------------ECCCCC
Confidence            45589999999          6 8888889999999999886  4333                          223344


Q ss_pred             cceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC----CCCCeeEEEEccCCCCCCCCcEEEEE---
Q 008363          181 IPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA----DTLPIRAVSWAPAESDSDSANVILTA---  253 (568)
Q Consensus       181 V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~----h~~~V~~v~~~p~~~~~~~~~~las~---  253 (568)
                      + .+++|+  ++|.++++...++.|.+||..++      ........    ....+.+++++|+|      +++++.   
T Consensus        71 ~-~~l~~~--~dg~l~v~~~~~~~i~~~d~~~g------~~~~~~~~~~~~~~~~~~~i~~d~~G------~l~vtd~~~  135 (296)
T 3e5z_A           71 Q-NGHCLN--KQGHLIACSHGLRRLERQREPGG------EWESIADSFEGKKLNSPNDVCLAPDG------SLWFSDPTY  135 (296)
T ss_dssp             E-EEEEEC--TTCCEEEEETTTTEEEEECSTTC------CEEEEECEETTEECCCCCCEEECTTS------CEEEEECSH
T ss_pred             c-ceeeEC--CCCcEEEEecCCCeEEEEcCCCC------cEEEEeeccCCCCCCCCCCEEECCCC------CEEEECCcc
Confidence            4 889988  88888877777799999998765      22222211    12356789999999      788873   


Q ss_pred             -c-------------CCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCC
Q 008363          254 -G-------------HGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGK  318 (568)
Q Consensus       254 -s-------------~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~  318 (568)
                       .             ..+ |..+|.. +  .+..+..+....+.++|+|+++.|++.+.++.|++||+..       .|.
T Consensus       136 g~~~~~~~~~~~~~~~~~~l~~~~~~-g--~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~-------~g~  205 (296)
T 3e5z_A          136 GIDKPEEGYGGEMELPGRWVFRLAPD-G--TLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNA-------RGE  205 (296)
T ss_dssp             HHHCGGGSSCCCCCSSSCEEEEECTT-S--CEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECS-------SSC
T ss_pred             ccccccccccccccCCCcEEEEECCC-C--CEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECC-------CCc
Confidence             2             123 5556554 2  2333445566679999999999996667789999999851       232


Q ss_pred             CccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecc-cCCCCceEEcc
Q 008363          319 PFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSV-TEDESAITVNT  397 (568)
Q Consensus       319 ~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~i~~~~  397 (568)
                      +.     .....+..+...+.+++++++|.++++.  ++.|.+|+.....+..-.....   ..+..+ .+++..|.+.+
T Consensus       206 ~~-----~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t  275 (296)
T 3e5z_A          206 TE-----YQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGDELGRVLTPQT---TSNLCFGGPEGRTLYMTV  275 (296)
T ss_dssp             EE-----EEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSCEEEEEECSSC---CCEEEEESTTSCEEEEEE
T ss_pred             Cc-----CCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCCCEEEEEECCCC---ceeEEEECCCCCEEEEEc
Confidence            20     0012223345567789999999877666  8899999987433322211111   222234 45666666654


Q ss_pred             c
Q 008363          398 P  398 (568)
Q Consensus       398 ~  398 (568)
                      .
T Consensus       276 ~  276 (296)
T 3e5z_A          276 S  276 (296)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.39  E-value=6.2e-11  Score=120.31  Aligned_cols=220  Identities=10%  Similarity=0.061  Sum_probs=135.0

Q ss_pred             EEEEccCCCCcccccCcccEEEEEe----------CCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLL----------GNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s----------~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      .++|+|++          ++|+++.          .++.|.+||+.+++.+..+.....              .      
T Consensus        54 ~i~~spdg----------~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~--------------~------  103 (361)
T 2oiz_A           54 HVQVSNDG----------KKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK--------------R------  103 (361)
T ss_dssp             EEEECTTS----------SEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT--------------B------
T ss_pred             ceEECCCC----------CEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc--------------c------
Confidence            79999999          7888876          367899999998887766522100              0      


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeC--CCeEEEEEccCCCCCCCCceeEE-eeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCH--DGTVALWKFVASDSSIDSRPLLC-FSADTLPIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~-~~~h~~~V~~v~~~p~~~~~~~~~~la  251 (568)
                      ..+... |..++++  |+|++|+++..  +++|.+||+.+.      +.+.. +.. .+ ...+.+.|.+     +..++
T Consensus       104 ~~~g~~-p~~i~~s--pdg~~l~v~n~~~~~~v~v~d~~~~------~~~~~~i~~-~~-~~~v~~~p~~-----~~~~~  167 (361)
T 2oiz_A          104 VQGLNY-DGLFRQT--TDGKFIVLQNASPATSIGIVDVAKG------DYVEDVTAA-AG-CWSVIPQPNR-----PRSFM  167 (361)
T ss_dssp             CCBCCC-GGGEEEC--TTSSEEEEEEESSSEEEEEEETTTT------EEEEEEGGG-TT-EEEEEECTTS-----SSEEE
T ss_pred             cccCCC-cceEEEC--CCCCEEEEECCCCCCeEEEEECCCC------cEEEEEecC-CC-cceeEEcCCC-----CeeEE
Confidence            011122 3778988  89999998874  689999999876      55555 321 11 1223333433     12333


Q ss_pred             EEcCCC-------------------------------------------------EEEEECCCCCcce-eeeC--C----
Q 008363          252 TAGHGG-------------------------------------------------LKFWDIRDPFRPL-WDIH--P----  275 (568)
Q Consensus       252 s~s~d~-------------------------------------------------v~lwD~~~~~~~~-~~~~--~----  275 (568)
                      +.+.|+                                                 |.++|+......+ ..+.  .    
T Consensus       168 ~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~  247 (361)
T 2oiz_A          168 TICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDK  247 (361)
T ss_dssp             EEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHH
T ss_pred             EECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccc
Confidence            333333                                                 4444443221000 0000  0    


Q ss_pred             C----CCCeEEEEEcCCCCEEEEEeC-----------CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE
Q 008363          276 A----PKFIYGLDWLPDPGCVILSFD-----------DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS  340 (568)
Q Consensus       276 h----~~~i~~l~~sp~~~~l~s~~~-----------dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~  340 (568)
                      +    ......++|+|++..++++..           .+.|.+||+.+        ++        .+..+..+.  +++
T Consensus       248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t--------~~--------~v~~i~~~~--p~~  309 (361)
T 2oiz_A          248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT--------KQ--------RVARIPGRD--ALS  309 (361)
T ss_dssp             HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT--------TE--------EEEEEECTT--CCE
T ss_pred             ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC--------Cc--------EEEEEecCC--eeE
Confidence            0    001112688999888887643           34799999843        43        346777776  899


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEcCCC--eeeccC-CCCCcceeeeecccCCCC
Q 008363          341 VQVSRLTGMVAYCSADGTVHRFQLTAK--AVEKDH-SRNRPMHFLCGSVTEDES  391 (568)
Q Consensus       341 l~~sp~~~~l~s~s~Dg~v~iwd~~~~--~~~~~~-~~~~~~~~~~~s~~~~~~  391 (568)
                      ++|+|+|++|++++. +.|.+||+.++  +..... ..-..|+.+  .++++|.
T Consensus       310 ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~--~~~p~G~  360 (361)
T 2oiz_A          310 MTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQV--QFHPVGG  360 (361)
T ss_dssp             EEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEE--EECCCSC
T ss_pred             EEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEE--EecCCCC
Confidence            999999999998887 99999999998  766552 333445444  4555553

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.36  E-value=4.5e-12  Score=129.56  Aligned_cols=219  Identities=10%  Similarity=-0.056  Sum_probs=139.7

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCC---CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcC
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGN---GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ  179 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~d---g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~  179 (568)
                      +..++|+|+|          ++|+.+...   ..|.+||+.+++.....                          .++..
T Consensus        38 ~~~~~~SpdG----------~~l~~~~~~~g~~~l~~~d~~~~~~~~l~--------------------------~~~~~   81 (396)
T 3c5m_A           38 FYQKCFTQDG----------KKLLFAGDFDGNRNYYLLNLETQQAVQLT--------------------------EGKGD   81 (396)
T ss_dssp             TTSCCBCTTS----------CEEEEEECTTSSCEEEEEETTTTEEEECC--------------------------CSSCB
T ss_pred             eecCcCCCCC----------CEEEEEEecCCCceEEEEECCCCcEEEee--------------------------cCCCC
Confidence            4478999999          677776543   36888898886543221                          22222


Q ss_pred             ccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeE-------------------EEEccC
Q 008363          180 SIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRA-------------------VSWAPA  240 (568)
Q Consensus       180 ~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~-------------------v~~~p~  240 (568)
                      .. ..+.|+  |+|++|+.++.++.|.+||+.++      .....+..+......                   +.|+|+
T Consensus        82 ~~-~~~~~s--pdg~~l~~~~~~~~l~~~d~~~~------~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spd  152 (396)
T 3c5m_A           82 NT-FGGFIS--TDERAFFYVKNELNLMKVDLETL------EEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPL  152 (396)
T ss_dssp             CT-TTCEEC--TTSSEEEEEETTTEEEEEETTTC------CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCC
T ss_pred             cc-ccceEC--CCCCEEEEEEcCCcEEEEECCCC------CcEEEEecccccCCCCCEEEeccCCccccccccccccCCC
Confidence            22 347899  89999999999999999999866      444444444443222                   345666


Q ss_pred             CCCCCCCcEEEEE-----cCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcC-CCCEEEEEeCC------CcEEEEEcc
Q 008363          241 ESDSDSANVILTA-----GHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLP-DPGCVILSFDD------GAMRIVSLL  307 (568)
Q Consensus       241 ~~~~~~~~~las~-----s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp-~~~~l~s~~~d------g~I~lwd~~  307 (568)
                      +      ..++.+     ..+. |.+||+.++ ...... .+...+..+.|+| ++..|+..+.+      ..|.+||+.
T Consensus       153 g------~~~~~~~~~~~~~~~~l~~~d~~~g-~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~  224 (396)
T 3c5m_A          153 T------SWEKFAEFYHTNPTCRLIKVDIETG-ELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED  224 (396)
T ss_dssp             C------SHHHHHHHHHTCCCEEEEEEETTTC-CEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT
T ss_pred             C------cceeeeeeccCCCcceEEEEECCCC-cEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC
Confidence            6      455443     2345 999999876 333222 4566789999999 88877776553      358888873


Q ss_pred             ccccCCCCCCCCccCccccceEEEecC--CCCEEEEEEecCCCEEEEEeCC-----CeEEEEEcCCCeeeccCCCCCcce
Q 008363          308 KAAYDVPATGKPFAGTKQQGLHLVNCS--SFAIWSVQVSRLTGMVAYCSAD-----GTVHRFQLTAKAVEKDHSRNRPMH  380 (568)
Q Consensus       308 ~~~~~~~~~g~~~~~~~~~~l~~~~~h--~~~V~~l~~sp~~~~l~s~s~D-----g~v~iwd~~~~~~~~~~~~~~~~~  380 (568)
                      .        ++.         ..+..+  ...+..++|+|+|++|+.++.+     +.|++||+.++.........   .
T Consensus       225 ~--------~~~---------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~  284 (396)
T 3c5m_A          225 G--------SNV---------RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP---P  284 (396)
T ss_dssp             S--------CCC---------EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC---S
T ss_pred             C--------Cce---------eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC---C
Confidence            2        221         122222  2357889999999988777654     55999999877654321111   1


Q ss_pred             eeeecccC-CCCceEE
Q 008363          381 FLCGSVTE-DESAITV  395 (568)
Q Consensus       381 ~~~~s~~~-~~~~i~~  395 (568)
                      .. ..+++ ++..+..
T Consensus       285 ~~-~~~s~~dg~~l~~  299 (396)
T 3c5m_A          285 CS-HLMSNFDGSLMVG  299 (396)
T ss_dssp             EE-EEEECSSSSEEEE
T ss_pred             CC-CCccCCCCceEEE
Confidence            11 45666 7765554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.36  E-value=8.5e-11  Score=117.61  Aligned_cols=204  Identities=8%  Similarity=0.089  Sum_probs=142.6

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc-eeeEEeccCCccCCCCceEEEeecceecccccCCcCc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR-TMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQS  180 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~-~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~  180 (568)
                      ....|+++|++          .++++...++.|++|+..... .+..+.... ..+.                ..++...
T Consensus        92 ~p~gia~d~~g----------~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~-~~g~----------------~~~~~~~  144 (329)
T 3fvz_A           92 LPHGLSIDTDG----------NYWVTDVALHQVFKLDPHSKEGPLLILGRSM-QPGS----------------DQNHFCQ  144 (329)
T ss_dssp             SEEEEEECTTS----------CEEEEETTTTEEEEECTTCSSCCSEEESBTT-BCCC----------------STTCCSS
T ss_pred             CceEEEECCCC----------CEEEEECCCCEEEEEeCCCCeEEEEEecccC-CCCC----------------CccccCC
Confidence            34589999999          788888889999999986532 343331100 0000                0123333


Q ss_pred             cceEEEEccCC-CCCEEEEEe-CCCeEEEEEccCCCCCCCCceeEEeeC----------CCCCeeEEEEccC-CCCCCCC
Q 008363          181 IPLTMEWSTSP-PHDYLLAGC-HDGTVALWKFVASDSSIDSRPLLCFSA----------DTLPIRAVSWAPA-ESDSDSA  247 (568)
Q Consensus       181 V~~~v~~s~~~-~g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~----------h~~~V~~v~~~p~-~~~~~~~  247 (568)
                       |..|+++  + ++.++++.+ .++.|++|+.. +      ..+..+..          +-.....|+++|+ +      
T Consensus       145 -P~~ia~~--~~~g~lyv~d~~~~~~I~~~~~~-g------~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g------  208 (329)
T 3fvz_A          145 -PTDVAVE--PSTGAVFVSDGYCNSRIVQFSPS-G------KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD------  208 (329)
T ss_dssp             -EEEEEEC--TTTCCEEEEECSSCCEEEEECTT-S------CEEEEECEECCSSSCCTTEESCEEEEEEETTTT------
T ss_pred             -CcEEEEe--CCCCeEEEEeCCCCCeEEEEcCC-C------CEEEEeccCCCCCCCCCcccCCCcEEEEECCCC------
Confidence             4899988  7 677888886 69999999943 3      45555532          2234899999998 6      


Q ss_pred             cEEEEEcCCC-EEEEECCCCCcceeee--CCCCCCeEEEEEcCCCCEEEEE-------eCCCcEEEEEccccccCCCCCC
Q 008363          248 NVILTAGHGG-LKFWDIRDPFRPLWDI--HPAPKFIYGLDWLPDPGCVILS-------FDDGAMRIVSLLKAAYDVPATG  317 (568)
Q Consensus       248 ~~las~s~d~-v~lwD~~~~~~~~~~~--~~h~~~i~~l~~sp~~~~l~s~-------~~dg~I~lwd~~~~~~~~~~~g  317 (568)
                      .++++...++ |++||..++ ..+..+  ..+...+..++|+| +..+++.       ..+..|++||+.        +|
T Consensus       209 ~l~v~d~~~~~I~~~~~~~G-~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~--------~g  278 (329)
T 3fvz_A          209 QLCVADRENGRIQCFKTDTK-EFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFS--------SG  278 (329)
T ss_dssp             EEEEEETTTTEEEEEETTTC-CEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETT--------TC
T ss_pred             EEEEEECCCCEEEEEECCCC-cEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcC--------CC
Confidence            7888877777 999999865 555555  34566789999999 3333332       335589999984        35


Q ss_pred             CCccCccccceEEE---ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          318 KPFAGTKQQGLHLV---NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       318 ~~~~~~~~~~l~~~---~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                      +.+        ..+   .++...+..|+++|+|.++++...++.|++|++..
T Consensus       279 ~~~--------~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          279 EII--------DVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CEE--------EEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             eEE--------EEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            443        344   35667789999999998888888999999999853

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.35  E-value=1.8e-11  Score=125.03  Aligned_cols=211  Identities=8%  Similarity=-0.018  Sum_probs=129.9

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      ....+.|+|++          +.|+.++.++.|++|++.+++.......+..       .   .+.-..+. ........
T Consensus        82 ~~~~~~~spdg----------~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~-------~---~~~g~~l~-~~~~~~~~  140 (396)
T 3c5m_A           82 NTFGGFISTDE----------RAFFYVKNELNLMKVDLETLEEQVIYTVDEE-------W---KGYGTWVA-NSDCTKLV  140 (396)
T ss_dssp             CTTTCEECTTS----------SEEEEEETTTEEEEEETTTCCEEEEEECCTT-------E---EEEEEEEE-CTTSSEEE
T ss_pred             ccccceECCCC----------CEEEEEEcCCcEEEEECCCCCcEEEEecccc-------c---CCCCCEEE-eccCCccc
Confidence            33248899999          7999999999999999998765544322211       0   00000000 00000000


Q ss_pred             ---ceEEEEccCCCCCEEEEE-----eCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEcc-CCCCCCCCcEEEE
Q 008363          182 ---PLTMEWSTSPPHDYLLAG-----CHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAP-AESDSDSANVILT  252 (568)
Q Consensus       182 ---~~~v~~s~~~~g~~l~sg-----s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p-~~~~~~~~~~las  252 (568)
                         ...++|+  |+++.++.+     ..+..|.+||+.++      ...... .+...+..+.|+| ++      ..|+.
T Consensus       141 ~~~~~~~~~s--pdg~~~~~~~~~~~~~~~~l~~~d~~~g------~~~~~~-~~~~~~~~~~~sp~dg------~~l~~  205 (396)
T 3c5m_A          141 GIEILKRDWQ--PLTSWEKFAEFYHTNPTCRLIKVDIETG------ELEVIH-QDTAWLGHPIYRPFDD------STVGF  205 (396)
T ss_dssp             EEEEEGGGCC--CCCSHHHHHHHHHTCCCEEEEEEETTTC------CEEEEE-EESSCEEEEEEETTEE------EEEEE
T ss_pred             cccccccccC--CCCcceeeeeeccCCCcceEEEEECCCC------cEEeec-cCCcccccceECCCCC------CEEEE
Confidence               0013455  777776654     45678999999866      333333 4667799999999 66      55655


Q ss_pred             EcC--C----C-EEEEECCCCCcceeeeCCC--CCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEccccccCCCCCCC
Q 008363          253 AGH--G----G-LKFWDIRDPFRPLWDIHPA--PKFIYGLDWLPDPGCVILSFDD-----GAMRIVSLLKAAYDVPATGK  318 (568)
Q Consensus       253 ~s~--d----~-v~lwD~~~~~~~~~~~~~h--~~~i~~l~~sp~~~~l~s~~~d-----g~I~lwd~~~~~~~~~~~g~  318 (568)
                      ++.  .    . |.+||+... . ...+..+  ...+..++|+|+|++|+.++.+     +.|++||+..        |+
T Consensus       206 ~~~~~~~~~~~~l~~~d~~~~-~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~--------g~  275 (396)
T 3c5m_A          206 CHEGPHDLVDARMWLVNEDGS-N-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET--------LE  275 (396)
T ss_dssp             EECSCSSSCSCCCEEEETTSC-C-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT--------CC
T ss_pred             EecCCCCCCCceEEEEECCCC-c-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC--------CC
Confidence            443  2    4 888998754 2 2223223  2257889999999988877543     4499999843        43


Q ss_pred             CccCccccceEEEecCCCCEEEEEEec-CCCEEEEEe----------------CCCeEEEEEcCCCee
Q 008363          319 PFAGTKQQGLHLVNCSSFAIWSVQVSR-LTGMVAYCS----------------ADGTVHRFQLTAKAV  369 (568)
Q Consensus       319 ~~~~~~~~~l~~~~~h~~~V~~l~~sp-~~~~l~s~s----------------~Dg~v~iwd~~~~~~  369 (568)
                      ..      .+..+.    ... +.|+| +|++|++++                .++.|++||+.++..
T Consensus       276 ~~------~l~~~~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          276 NE------EVMVMP----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             EE------EEEECC----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred             eE------EeeeCC----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence            21      111222    123 89999 999888765                347899999987654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.35  E-value=5e-11  Score=131.05  Aligned_cols=206  Identities=13%  Similarity=0.027  Sum_probs=136.1

Q ss_pred             cCCceeeEEEEccCCCCcccccCcccEEEEEeCC----------CcEEEEECCC------CceeeEEeccCCccCCCCce
Q 008363           98 HNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGN----------GSLEVWEVPL------LRTMKAIYLSSMKEGTDPRF  161 (568)
Q Consensus        98 h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~d----------g~V~iwd~~~------~~~~~~l~~~~~~~~~~~~~  161 (568)
                      |.. .+..++|+|+|          +.|++++.+          ..|++||+.+      +.. ..+             
T Consensus       128 ~~~-~~~~~~~spDg----------~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l-------------  182 (662)
T 3azo_A          128 GGL-RWADPVLLPER----------GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-REL-------------  182 (662)
T ss_dssp             TCE-EEEEEEEETTT----------TEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EES-------------
T ss_pred             CCc-cccCcEECCCC----------CEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEE-------------
Confidence            444 55699999999          789888877          5899999987      433 222             


Q ss_pred             EEEeecceeccccc-CCcCccceEEEEccCCCCCEEEEEeCCC--------eEEEEEccC-CCCCCCCceeEEeeCCCCC
Q 008363          162 VKLEPVFRCSMLKC-GGTQSIPLTMEWSTSPPHDYLLAGCHDG--------TVALWKFVA-SDSSIDSRPLLCFSADTLP  231 (568)
Q Consensus       162 v~~~~~~~~~~~~~-~h~~~V~~~v~~s~~~~g~~l~sgs~Dg--------~I~iwd~~~-~~~~~~~~~~~~~~~h~~~  231 (568)
                                   . .+...+ ..++|+  |||++|+.++.++        .|.+||+.. +..   ........+|...
T Consensus       183 -------------~~~~~~~~-~~~~~S--pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~---~~~~~l~~~~~~~  243 (662)
T 3azo_A          183 -------------SDDAHRFV-TGPRLS--PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF---ADTRTLLGGPEEA  243 (662)
T ss_dssp             -------------SCSCSSEE-CCCEEC--TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE---EEEEEEEEETTBC
T ss_pred             -------------EecCCCcc-cCceEC--CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc---cccEEeCCCCCce
Confidence                         3 334455 788999  9999999887553        799999983 310   0233344456788


Q ss_pred             eeEEEEccCCCCCCCCcEEEEEcCCC---EEEEECCCCCcceeeeCCCCCC--------eEEEEEcCCCCEEEEEeCCCc
Q 008363          232 IRAVSWAPAESDSDSANVILTAGHGG---LKFWDIRDPFRPLWDIHPAPKF--------IYGLDWLPDPGCVILSFDDGA  300 (568)
Q Consensus       232 V~~v~~~p~~~~~~~~~~las~s~d~---v~lwD~~~~~~~~~~~~~h~~~--------i~~l~~sp~~~~l~s~~~dg~  300 (568)
                      +..++|+|++      +++++++.++   |.+||+.++ ........+...        +..++|+|+++++++++. +.
T Consensus       244 ~~~~~~spdg------~l~~~~~~~~~~~l~~~~~~~~-~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~  315 (662)
T 3azo_A          244 IAQAEWAPDG------SLIVATDRTGWWNLHRVDPATG-AATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA  315 (662)
T ss_dssp             EEEEEECTTS------CEEEEECTTSSCEEEEECTTTC-CEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS
T ss_pred             EcceEECCCC------eEEEEECCCCCeEEEEEECCCC-ceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc
Confidence            9999999999      7888887775   566666444 322222222221        467899999999999988 99


Q ss_pred             EEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEE-EEecCCCEEEEEeCCC--eEEEEEcCCCeee
Q 008363          301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSV-QVSRLTGMVAYCSADG--TVHRFQLTAKAVE  370 (568)
Q Consensus       301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l-~~sp~~~~l~s~s~Dg--~v~iwd~~~~~~~  370 (568)
                      ++||.+..      .+++         +..+..|...+..+ +++.+.-++++++.+.  .|++||+.++...
T Consensus       316 ~~l~~~d~------~~~~---------~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~  373 (662)
T 3azo_A          316 AVLGILDP------ESGE---------LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRAR  373 (662)
T ss_dssp             CEEEEEET------TTTE---------EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred             cEEEEEEC------CCCc---------EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence            99995532      1122         34667777777776 4443333444555554  4555666666543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.30  E-value=2.2e-10  Score=111.55  Aligned_cols=186  Identities=10%  Similarity=0.056  Sum_probs=139.5

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCc-CccceEEEEccCCCCCEEEEEeC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGT-QSIPLTMEWSTSPPHDYLLAGCH  201 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~-~~V~~~v~~s~~~~g~~l~sgs~  201 (568)
                      ++|++++.|+.|.+||..+++.+..+..                          +. ..+ .++.+.  |+|++|+  +.
T Consensus         6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~--------------------------~~~~~~-~~~~~~--pdG~ilv--s~   54 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDTKEIVWEYPL--------------------------EKGWEC-NSVAAT--KAGEILF--SY   54 (276)
T ss_dssp             EEEEECTTCSEEEEEETTTTEEEEEEEC--------------------------CTTCCC-CEEEEC--TTSCEEE--EC
T ss_pred             cEEEeeCCCCEEEEEECCCCeEEEEeCC--------------------------CccCCC-cCeEEC--CCCCEEE--eC
Confidence            6899999999999999999988876522                          22 233 778877  8898888  45


Q ss_pred             CCeEEEEEccCCCCCCCCceeEEeeCCC-CCeeEEEEccCCCCCCCCcEEEEEcC-CC-EEEEECCCCCcceeeeC----
Q 008363          202 DGTVALWKFVASDSSIDSRPLLCFSADT-LPIRAVSWAPAESDSDSANVILTAGH-GG-LKFWDIRDPFRPLWDIH----  274 (568)
Q Consensus       202 Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~~~~~~las~s~-d~-v~lwD~~~~~~~~~~~~----  274 (568)
                      ++.|..||. ++      +.+..+..+. ..+.++.+.+++      ++|++.+. ++ |..+|.. + +.++.+.    
T Consensus        55 ~~~V~~~d~-~G------~~~W~~~~~~~~~~~~~~~~~dG------~~lv~~~~~~~~v~~vd~~-G-k~l~~~~~~~~  119 (276)
T 3no2_A           55 SKGAKMITR-DG------RELWNIAAPAGCEMQTARILPDG------NALVAWCGHPSTILEVNMK-G-EVLSKTEFETG  119 (276)
T ss_dssp             BSEEEEECT-TS------CEEEEEECCTTCEEEEEEECTTS------CEEEEEESTTEEEEEECTT-S-CEEEEEEECCS
T ss_pred             CCCEEEECC-CC------CEEEEEcCCCCccccccEECCCC------CEEEEecCCCCEEEEEeCC-C-CEEEEEeccCC
Confidence            788999998 55      6777776653 568899999999      88888776 55 7777763 4 4443332    


Q ss_pred             --CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEE
Q 008363          275 --PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAY  352 (568)
Q Consensus       275 --~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s  352 (568)
                        .+......+++.++|.+|++...++.|.+||.         .|+.+        ..+..+ ..+.++.+.+++.+|++
T Consensus       120 ~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~---------~G~~~--------w~~~~~-~~~~~~~~~~~g~~~v~  181 (276)
T 3no2_A          120 IERPHAQFRQINKNKKGNYLVPLFATSEVREIAP---------NGQLL--------NSVKLS-GTPFSSAFLDNGDCLVA  181 (276)
T ss_dssp             CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECT---------TSCEE--------EEEECS-SCCCEEEECTTSCEEEE
T ss_pred             CCcccccccCceECCCCCEEEEecCCCEEEEECC---------CCCEE--------EEEECC-CCccceeEcCCCCEEEE
Confidence              11123456678999999999999999999998         26554        455544 34567788899999999


Q ss_pred             EeCCCeEEEEEcCCCeeecc
Q 008363          353 CSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       353 ~s~Dg~v~iwd~~~~~~~~~  372 (568)
                      ++.++.|..+|..++++.-.
T Consensus       182 ~~~~~~v~~~d~~tG~~~w~  201 (276)
T 3no2_A          182 CGDAHCFVQLNLESNRIVRR  201 (276)
T ss_dssp             CBTTSEEEEECTTTCCEEEE
T ss_pred             eCCCCeEEEEeCcCCcEEEE
Confidence            99889999999998876433

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.30  E-value=6.6e-10  Score=109.08  Aligned_cols=204  Identities=9%  Similarity=-0.052  Sum_probs=135.8

Q ss_pred             ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363           97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG  176 (568)
Q Consensus        97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~  176 (568)
                      .+.. .+.+++|+|++          .++++...++.|.+||..+++.........                      ..
T Consensus        66 ~~~~-~~~~l~~~~dg----------~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~----------------------~~  112 (296)
T 3e5z_A           66 HPSH-HQNGHCLNKQG----------HLIACSHGLRRLERQREPGGEWESIADSFE----------------------GK  112 (296)
T ss_dssp             SSCS-SEEEEEECTTC----------CEEEEETTTTEEEEECSTTCCEEEEECEET----------------------TE
T ss_pred             CCCC-CcceeeECCCC----------cEEEEecCCCeEEEEcCCCCcEEEEeeccC----------------------CC
Confidence            3444 56699999999          777777777899999998766543221000                      01


Q ss_pred             CcCccceEEEEccCCCCCEEEEEeC-----------------CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEcc
Q 008363          177 GTQSIPLTMEWSTSPPHDYLLAGCH-----------------DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAP  239 (568)
Q Consensus       177 h~~~V~~~v~~s~~~~g~~l~sgs~-----------------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p  239 (568)
                      ....+ ..++++  ++|+++++.+.                 .+.|..++.. +       .+..+..+......++|+|
T Consensus       113 ~~~~~-~~i~~d--~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-------~~~~~~~~~~~~~gi~~s~  181 (296)
T 3e5z_A          113 KLNSP-NDVCLA--PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-------TLSAPIRDRVKPNGLAFLP  181 (296)
T ss_dssp             ECCCC-CCEEEC--TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-------CEEEEECCCSSEEEEEECT
T ss_pred             CCCCC-CCEEEC--CCCCEEEECCccccccccccccccccCCCcEEEEECCC-C-------CEEEeecCCCCCccEEECC
Confidence            11223 678888  88988887321                 2344444433 2       2334456667789999999


Q ss_pred             CCCCCCCCcEEEEEcCCC-EEEEECCCCCcc---eeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCC
Q 008363          240 AESDSDSANVILTAGHGG-LKFWDIRDPFRP---LWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPA  315 (568)
Q Consensus       240 ~~~~~~~~~~las~s~d~-v~lwD~~~~~~~---~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~  315 (568)
                      ++      ++|++.+.++ |.+||+......   ...+..+...+..++++++|+++++.  ++.|.+||..        
T Consensus       182 dg------~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~--------  245 (296)
T 3e5z_A          182 SG------NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD--------  245 (296)
T ss_dssp             TS------CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT--------
T ss_pred             CC------CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC--------
Confidence            99      7777777777 999999722122   22233345566789999999866655  8899999983        


Q ss_pred             CCCCccCccccceEEEecCCCCEEEEEE-ecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          316 TGKPFAGTKQQGLHLVNCSSFAIWSVQV-SRLTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~-sp~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                       |+.        +..+..+.. +.+++| +|+++.|++++.+ .+..+++.+..+++
T Consensus       246 -g~~--------~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~~  291 (296)
T 3e5z_A          246 -GDE--------LGRVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLEH  291 (296)
T ss_dssp             -SCE--------EEEEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCCC
T ss_pred             -CCE--------EEEEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccccc
Confidence             433        356666766 899999 5888888888876 45556666655543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.29  E-value=3.9e-11  Score=120.21  Aligned_cols=157  Identities=8%  Similarity=0.111  Sum_probs=113.0

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCC-CCeeEEEEccCCCCCCCCcE-EEEEcCCC-EE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADT-LPIRAVSWAPAESDSDSANV-ILTAGHGG-LK  259 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~~~~~~-las~s~d~-v~  259 (568)
                      +.++++  +++.++++++.+++|.+||+.++      +.+..+..+. ..+..++|+|++      ++ ++++..++ |.
T Consensus         3 ~g~~~~--~~~~~~v~~~~~~~v~~~d~~~~------~~~~~~~~~~~~~~~~~~~s~dg------~~~~v~~~~~~~i~   68 (349)
T 1jmx_B            3 TGPALK--AGHEYMIVTNYPNNLHVVDVASD------TVYKSCVMPDKFGPGTAMMAPDN------RTAYVLNNHYGDIY   68 (349)
T ss_dssp             -CCCCC--TTCEEEEEEETTTEEEEEETTTT------EEEEEEECSSCCSSCEEEECTTS------SEEEEEETTTTEEE
T ss_pred             cccccc--CCCEEEEEeCCCCeEEEEECCCC------cEEEEEecCCCCCCceeEECCCC------CEEEEEeCCCCcEE
Confidence            344555  77889999999999999999876      6666665443 257899999998      54 55666677 99


Q ss_pred             EEECCCCCcceeeeC-CC-----CCCeEEEEEcCCCCEEEEEeCC------------CcEEEEEccccccCCCCCCCCcc
Q 008363          260 FWDIRDPFRPLWDIH-PA-----PKFIYGLDWLPDPGCVILSFDD------------GAMRIVSLLKAAYDVPATGKPFA  321 (568)
Q Consensus       260 lwD~~~~~~~~~~~~-~h-----~~~i~~l~~sp~~~~l~s~~~d------------g~I~lwd~~~~~~~~~~~g~~~~  321 (568)
                      +||+.++ ..+..+. .+     ...+..++|+|+|++|++++.+            +.|.+||+..        ++.. 
T Consensus        69 ~~d~~t~-~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~--------~~~~-  138 (349)
T 1jmx_B           69 GIDLDTC-KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD--------GLEA-  138 (349)
T ss_dssp             EEETTTT-EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG--------GGGB-
T ss_pred             EEeCCCC-cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC--------cccc-
Confidence            9999876 5554443 22     1236789999999999998865            8999999954        2221 


Q ss_pred             CccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          322 GTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       322 ~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                          ..+..+.. ...+.+++|+|+++ |++++  +.|++||+.+++...
T Consensus       139 ----~~~~~~~~-~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~  180 (349)
T 1jmx_B          139 ----KPVRTFPM-PRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTV  180 (349)
T ss_dssp             ----CCSEEEEC-CSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEE
T ss_pred             ----ceeeeccC-CCcccceeECCCCc-EEEcc--CcEEEEeCCCCceec
Confidence                22234443 34678999999999 55554  349999998776543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.27  E-value=6.3e-10  Score=123.14  Aligned_cols=231  Identities=10%  Similarity=-0.076  Sum_probs=142.3

Q ss_pred             ccCCceeeEEEEccCCCCcccccCcccEEEE-----EeCCCcEEEEECCCCcee-eEEeccCCccCCCCceEEEeeccee
Q 008363           97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAV-----LLGNGSLEVWEVPLLRTM-KAIYLSSMKEGTDPRFVKLEPVFRC  170 (568)
Q Consensus        97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las-----~s~dg~V~iwd~~~~~~~-~~l~~~~~~~~~~~~~v~~~~~~~~  170 (568)
                      +|.. .+..++|||+|          ++||.     |+.+..|++||+.+++.+ ...                      
T Consensus       118 ~~~~-~~~~~~~SPDG----------~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~----------------------  164 (695)
T 2bkl_A          118 DGTV-SLGTWAVSWDG----------KKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV----------------------  164 (695)
T ss_dssp             SSCE-EEEEEEECTTS----------SEEEEEEEETTCSCCEEEEEETTTCCBCSSCC----------------------
T ss_pred             CCCE-EEEEEEECCCC----------CEEEEEECCCCCceEEEEEEECCCCCCcCCcc----------------------
Confidence            4543 56699999999          78883     344568999999997654 110                      


Q ss_pred             cccccCCcCccceEEEEccCCCCCEEEEEeCCCe-------------EEEEEccCCCCCCCCceeEEeeCCCCCeeEEEE
Q 008363          171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGT-------------VALWKFVASDSSIDSRPLLCFSADTLPIRAVSW  237 (568)
Q Consensus       171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~-------------I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~  237 (568)
                          .... .. ..++|+  |+|+.|+.++.|..             |++|++.++..  ....+.....|...+..+.|
T Consensus       165 ----~~~~-~~-~~~~ws--pDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~--~~~lv~~~~~~~~~~~~~~~  234 (695)
T 2bkl_A          165 ----IEGG-KY-ATPKWT--PDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS--KDTVVHERTGDPTTFLQSDL  234 (695)
T ss_dssp             ----BSCC-TT-CCCEEC--TTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG--GCEEEECCCCCTTCEEEEEE
T ss_pred             ----cCcc-cc-cceEEe--cCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch--hceEEEecCCCCEEEEEEEE
Confidence                1111 11 568999  89999999998876             99999987621  01133333345667899999


Q ss_pred             ccCCCCCCCCcEEEEEc-CC---C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC----CCcEEEEEccc
Q 008363          238 APAESDSDSANVILTAG-HG---G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD----DGAMRIVSLLK  308 (568)
Q Consensus       238 ~p~~~~~~~~~~las~s-~d---~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~----dg~I~lwd~~~  308 (568)
                      +|+|      ++|+.++ .+   . |.+||..++  ....+..+...+....| ++|. |+..+.    ++.|.+||+..
T Consensus       235 SpDG------~~l~~~~~~~~~~~~l~~~~~~~~--~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~  304 (695)
T 2bkl_A          235 SRDG------KYLFVYILRGWSENDVYWKRPGEK--DFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAK  304 (695)
T ss_dssp             CTTS------CCEEEEEEETTTEEEEEEECTTCS--SCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTB
T ss_pred             CCCC------CEEEEEEeCCCCceEEEEEcCCCC--ceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCC
Confidence            9999      5555443 33   2 777765443  33344445555666666 5666 555443    57899999843


Q ss_pred             cccCCCCCCCCccCccccceEEEecC--CCCEEEEEEecCCCEEEEEeCCCeEEEEEcC-CCeeeccCCCCCcceeeeec
Q 008363          309 AAYDVPATGKPFAGTKQQGLHLVNCS--SFAIWSVQVSRLTGMVAYCSADGTVHRFQLT-AKAVEKDHSRNRPMHFLCGS  385 (568)
Q Consensus       309 ~~~~~~~~g~~~~~~~~~~l~~~~~h--~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~s  385 (568)
                              +..      .....+..|  ...|..++|+ ++.++++...|+..+||.+. .+...+.............+
T Consensus       305 --------~~~------~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~  369 (695)
T 2bkl_A          305 --------PAR------ASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLM  369 (695)
T ss_dssp             --------CSG------GGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCB
T ss_pred             --------CCc------cCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEee
Confidence                    221      011233333  4567888998 67888999999998888765 23322221111122233335


Q ss_pred             ccCCCCceEE
Q 008363          386 VTEDESAITV  395 (568)
Q Consensus       386 ~~~~~~~i~~  395 (568)
                      +++++..+.+
T Consensus       370 ~s~d~~~l~~  379 (695)
T 2bkl_A          370 GLEDLDDAYY  379 (695)
T ss_dssp             SCTTCSEEEE
T ss_pred             cCCCCCEEEE
Confidence            5566665553

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.26  E-value=5.7e-10  Score=107.61  Aligned_cols=195  Identities=6%  Similarity=-0.078  Sum_probs=134.8

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      ++++++.+++          .++++.. ++.|.+||....... .+.                         ......+ 
T Consensus        69 p~~i~~~~~g----------~l~v~~~-~~~i~~~d~~~~~~~-~~~-------------------------~~~~~~p-  110 (270)
T 1rwi_B           69 PQGLAVDGAG----------TVYVTDF-NNRVVTLAAGSNNQT-VLP-------------------------FDGLNYP-  110 (270)
T ss_dssp             CCCEEECTTC----------CEEEEET-TTEEEEECTTCSCCE-ECC-------------------------CCSCSSE-
T ss_pred             cceeEECCCC----------CEEEEcC-CCEEEEEeCCCceEe-eee-------------------------cCCcCCC-
Confidence            4489999998          6555555 889999998764322 110                         1112233 


Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW  261 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw  261 (568)
                      ..+++.  ++|.++++...++.|.+|+....      ........+...+.+|++++++      +++++...++ |.+|
T Consensus       111 ~~i~~~--~~g~l~v~~~~~~~i~~~~~~~~------~~~~~~~~~~~~p~~i~~~~~g------~l~v~~~~~~~i~~~  176 (270)
T 1rwi_B          111 EGLAVD--TQGAVYVADRGNNRVVKLAAGSK------TQTVLPFTGLNDPDGVAVDNSG------NVYVTDTDNNRVVKL  176 (270)
T ss_dssp             EEEEEC--TTCCEEEEEGGGTEEEEECTTCC------SCEECCCCSCCSCCCEEECTTC------CEEEEEGGGTEEEEE
T ss_pred             cceEEC--CCCCEEEEECCCCEEEEEECCCc------eeEeeccccCCCceeEEEeCCC------CEEEEECCCCEEEEE
Confidence            888988  78888887777899999975433      2222122333467899999998      7888877666 9999


Q ss_pred             ECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe-cCCCCEEE
Q 008363          262 DIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN-CSSFAIWS  340 (568)
Q Consensus       262 D~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~-~h~~~V~~  340 (568)
                      |.... ........+...+..|+++++|..+++...++.|.+||...         ...        ..+. .+-..+.+
T Consensus       177 ~~~~~-~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~---------~~~--------~~~~~~~~~~p~~  238 (270)
T 1rwi_B          177 EAESN-NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS---------TTS--------TVLPFTGLNTPLA  238 (270)
T ss_dssp             CTTTC-CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC---------SCC--------EECCCCSCSCEEE
T ss_pred             ecCCC-ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC---------Ccc--------eeeccCCCCCcee
Confidence            98865 32222223336689999999997666666788999999832         211        1111 23356899


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363          341 VQVSRLTGMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       341 l~~sp~~~~l~s~s~Dg~v~iwd~~~~  367 (568)
                      ++++++|.++++...++.|++|++...
T Consensus       239 i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          239 VAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             EEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            999999998899999999999998643

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.26  E-value=1.2e-09  Score=105.43  Aligned_cols=196  Identities=7%  Similarity=-0.082  Sum_probs=130.4

Q ss_pred             eEEEEccCCCCcccccCcccEEE-EEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          104 WDVKWKPYNAVDCKCKQRLGYLA-VLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       104 ~~v~~sp~~~~~~~~~~~~~~la-s~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      .++++++++          .+++ +.+.++.|.+|+..+.......                          ..+...+ 
T Consensus        27 ~~i~~~~~g----------~l~v~~~~~~~~i~~~~~~~~~~~~~~--------------------------~~~~~~p-   69 (270)
T 1rwi_B           27 SGVAVDSAG----------NVYVTSEGMYGRVVKLATGSTGTTVLP--------------------------FNGLYQP-   69 (270)
T ss_dssp             EEEEECTTC----------CEEEEECSSSCEEEEECC-----EECC--------------------------CCSCCSC-
T ss_pred             cceEECCCC----------CEEEEccCCCCcEEEecCCCcccceEe--------------------------eCCcCCc-
Confidence            389999998          6666 4477899999987653321110                          1122233 


Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee-CCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS-ADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF  260 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l  260 (568)
                      .++++.  ++|.++++.. ++.|.+||....      . ...+. .....+.+|++++++      .++++...++ |.+
T Consensus        70 ~~i~~~--~~g~l~v~~~-~~~i~~~d~~~~------~-~~~~~~~~~~~p~~i~~~~~g------~l~v~~~~~~~i~~  133 (270)
T 1rwi_B           70 QGLAVD--GAGTVYVTDF-NNRVVTLAAGSN------N-QTVLPFDGLNYPEGLAVDTQG------AVYVADRGNNRVVK  133 (270)
T ss_dssp             CCEEEC--TTCCEEEEET-TTEEEEECTTCS------C-CEECCCCSCSSEEEEEECTTC------CEEEEEGGGTEEEE
T ss_pred             ceeEEC--CCCCEEEEcC-CCEEEEEeCCCc------e-EeeeecCCcCCCcceEECCCC------CEEEEECCCCEEEE
Confidence            788988  7887666655 889999998754      1 22222 233568999999998      7888877766 999


Q ss_pred             EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE
Q 008363          261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS  340 (568)
Q Consensus       261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~  340 (568)
                      ||..+. ............+..|+++|+|+.+++...++.|.+||...        +...        .....+...+.+
T Consensus       134 ~~~~~~-~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~--------~~~~--------~~~~~~~~~p~~  196 (270)
T 1rwi_B          134 LAAGSK-TQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES--------NNQV--------VLPFTDITAPWG  196 (270)
T ss_dssp             ECTTCC-SCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT--------CCEE--------ECCCSSCCSEEE
T ss_pred             EECCCc-eeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC--------CceE--------eecccCCCCceE
Confidence            986654 22222222334578899999999666666688999999842        1110        111123356789


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363          341 VQVSRLTGMVAYCSADGTVHRFQLTAKAV  369 (568)
Q Consensus       341 l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~  369 (568)
                      ++++++|.++++...++.|.+|+......
T Consensus       197 i~~d~~g~l~v~~~~~~~v~~~~~~~~~~  225 (270)
T 1rwi_B          197 IAVDEAGTVYVTEHNTNQVVKLLAGSTTS  225 (270)
T ss_dssp             EEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred             EEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence            99999998888777889999999876543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.26  E-value=1.3e-10  Score=116.03  Aligned_cols=192  Identities=9%  Similarity=-0.009  Sum_probs=132.6

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      +++++|+|++          ..++..+.++.+++|   .+.....+                          .++...+ 
T Consensus         8 ~~~~~~~~~~----------~~~~~~~~~~~~~~~---~~~~~~~~--------------------------~~~~~~~-   47 (333)
T 2dg1_A            8 LPTLFYSGKS----------NSAVPIISESELQTI---TAEPWLEI--------------------------SKKGLQL-   47 (333)
T ss_dssp             CCBCCSCGGG----------GCSSCCCCGGGSCEE---ECEEEEEE--------------------------ESSCCCE-
T ss_pred             cceeeecCCc----------cceeEEeecccCccc---ccceeEEE--------------------------eccCccc-
Confidence            4578888887          566666778889999   22333333                          3344444 


Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC----C-
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG----G-  257 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d----~-  257 (568)
                      .+++|+  ++|.+++++..++.|.+||..++      ........+...+.+++|++++      ++++++..+    + 
T Consensus        48 ~~~~~~--~~g~l~~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~~~~i~~~~dg------~l~v~~~~~~~~~~~  113 (333)
T 2dg1_A           48 EGLNFD--RQGQLFLLDVFEGNIFKINPETK------EIKRPFVSHKANPAAIKIHKDG------RLFVCYLGDFKSTGG  113 (333)
T ss_dssp             EEEEEC--TTSCEEEEETTTCEEEEECTTTC------CEEEEEECSSSSEEEEEECTTS------CEEEEECTTSSSCCE
T ss_pred             cCcEEC--CCCCEEEEECCCCEEEEEeCCCC------cEEEEeeCCCCCcceEEECCCC------cEEEEeCCCCCCCce
Confidence            889998  88888888889999999998865      4433333566789999999998      788887766    5 


Q ss_pred             EEEEECCCCCcceeeeC--CCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363          258 LKFWDIRDPFRPLWDIH--PAPKFIYGLDWLPDPGCVILSFD------DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH  329 (568)
Q Consensus       258 v~lwD~~~~~~~~~~~~--~h~~~i~~l~~sp~~~~l~s~~~------dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~  329 (568)
                      |.+||..+.. ....+.  .+...++.++++|+|+.+++...      .+.|..||..        +++.         .
T Consensus       114 i~~~d~~~~~-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~--------~~~~---------~  175 (333)
T 2dg1_A          114 IFAATENGDN-LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD--------FRTV---------T  175 (333)
T ss_dssp             EEEECTTSCS-CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT--------SCCE---------E
T ss_pred             EEEEeCCCCE-EEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC--------CCEE---------E
Confidence            9999988763 221222  33456899999999987776653      2445555542        1222         2


Q ss_pred             EEecCCCCEEEEEEecCCCEEE-EEeCCCeEEEEEcCC
Q 008363          330 LVNCSSFAIWSVQVSRLTGMVA-YCSADGTVHRFQLTA  366 (568)
Q Consensus       330 ~~~~h~~~V~~l~~sp~~~~l~-s~s~Dg~v~iwd~~~  366 (568)
                      .+..+...+..++|+|++++|+ +.+.++.|.+|++.+
T Consensus       176 ~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          176 PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED  213 (333)
T ss_dssp             EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence            2223334578999999998554 455688999999853

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.24  E-value=2.6e-10  Score=114.45  Aligned_cols=182  Identities=13%  Similarity=0.159  Sum_probs=121.2

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCC---C--cEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCC
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGN---G--SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGG  177 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~d---g--~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h  177 (568)
                      +..++|+|+|          +.||.++.+   +  .|.+|++.+++.....                          .. 
T Consensus        61 ~~~~~~SpDg----------~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~--------------------------~~-  103 (347)
T 2gop_A           61 ATMPRISPDG----------KKIAFMRANEEKKVSEIWVADLETLSSKKIL--------------------------EA-  103 (347)
T ss_dssp             CEEEEECTTS----------SEEEEEEEETTTTEEEEEEEETTTTEEEEEE--------------------------EE-
T ss_pred             CCCeEECCCC----------CEEEEEEeccCCCcceEEEEECCCCceEEEE--------------------------cC-
Confidence            4589999999          788877754   3  3778888876654332                          11 


Q ss_pred             cCccceEEEEccCCCCCEEEEEeCC---------------------------CeEEEEEccCCCCCCCCceeEEeeCCCC
Q 008363          178 TQSIPLTMEWSTSPPHDYLLAGCHD---------------------------GTVALWKFVASDSSIDSRPLLCFSADTL  230 (568)
Q Consensus       178 ~~~V~~~v~~s~~~~g~~l~sgs~D---------------------------g~I~iwd~~~~~~~~~~~~~~~~~~h~~  230 (568)
                      .. + ..+.|+  |+|+.|+.++.+                           ..|.+||+.++      ..+..+.. . 
T Consensus       104 ~~-~-~~~~ws--pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~------~~~~~l~~-~-  171 (347)
T 2gop_A          104 KN-I-RSLEWN--EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE------EVIEEFEK-P-  171 (347)
T ss_dssp             SE-E-EEEEEC--TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT------EEEEEEEE-E-
T ss_pred             CC-c-cceeEC--CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC------eEEeeecC-C-
Confidence            12 6 889999  889988887642                           57889998765      44234433 3 


Q ss_pred             CeeEEEEccCCCCCCCCcEEEEEcCC--------C--EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCC--
Q 008363          231 PIRAVSWAPAESDSDSANVILTAGHG--------G--LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDD--  298 (568)
Q Consensus       231 ~V~~v~~~p~~~~~~~~~~las~s~d--------~--v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d--  298 (568)
                      .+..++|+|++       +++++..+        .  |.++|  ++ . ...+..+ ..+..+  +|+|++|+.++.+  
T Consensus       172 ~~~~~~~spdg-------~~~~~~~~~~~~~~~~~~~l~~~d--~~-~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~  237 (347)
T 2gop_A          172 RFSSGIWHRDK-------IVVNVPHREIIPQYFKFWDIYIWE--DG-K-EEKMFEK-VSFYAV--DSDGERILLYGKPEK  237 (347)
T ss_dssp             TTCEEEEETTE-------EEEEEECCCSSCCSSCCEEEEEEE--TT-E-EEEEEEE-ESEEEE--EECSSCEEEEECCSS
T ss_pred             CcccccCCCCe-------EEEEEecccccccccccccEEEeC--CC-c-eEEeccC-cceeeE--CCCCCEEEEEEcccc
Confidence            78899999985       66555432        2  55556  33 2 3333333 445544  9999999888754  


Q ss_pred             ------CcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE-EEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363          299 ------GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS-VQVSRLTGMVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       299 ------g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~-l~~sp~~~~l~s~s~Dg~v~iwd~~~~~  368 (568)
                            ..|++||  .        |+.        ......|...+.. +.|+ ++ ++++++.++.++|| +.++.
T Consensus       238 ~~~~~~~~l~~~d--~--------~~~--------~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~  293 (347)
T 2gop_A          238 KYMSEHNKLYIYD--G--------KEV--------MGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE  293 (347)
T ss_dssp             SCCCSSCEEEEEC--S--------SCE--------EESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS
T ss_pred             CCccccceEEEEC--C--------Cce--------EeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc
Confidence                  3577776  1        221        1222345667876 8999 88 99999999999999 86443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.24  E-value=1.7e-10  Score=116.87  Aligned_cols=183  Identities=11%  Similarity=0.089  Sum_probs=126.1

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      +..+++++..          ++|++|+.++ +.||++...+....   ..  .+.      +.+.     ....+.. | 
T Consensus        40 ~nlLais~~~----------gll~a~~~~~-l~v~~~~~l~~~~~---~~--~~~------~~~~-----~~~~lp~-V-   90 (388)
T 1xip_A           40 LQNLDISNSK----------SLFVAASGSK-AVVGELQLLRDHIT---SD--STP------LTFK-----WEKEIPD-V-   90 (388)
T ss_dssp             CBCEEEETTT----------TEEEEEETTE-EEEEEHHHHHHHHH---SS--SCC------CCCS-----EEEECTT-E-
T ss_pred             ccEEEEcCCC----------CEEEEeCCCE-EEEEEhhHhhhhhc---cc--ccc------ccce-----EEeeCCC-e-
Confidence            4489999999          7999999875 66699765321000   00  000      0000     0023444 7 


Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW  261 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw  261 (568)
                      +.|+|    ++.+|+++ .+|.|++||+.+.      ........|...+.++.+.+.       + +|++..|| |.+|
T Consensus        91 ~~l~f----d~~~L~v~-~~~~l~v~dv~sl------~~~~~~~~~~~~v~~i~~~~p-------~-~av~~~dG~L~v~  151 (388)
T 1xip_A           91 IFVCF----HGDQVLVS-TRNALYSLDLEEL------SEFRTVTSFEKPVFQLKNVNN-------T-LVILNSVNDLSAL  151 (388)
T ss_dssp             EEEEE----ETTEEEEE-ESSEEEEEESSST------TCEEEEEECSSCEEEEEECSS-------E-EEEEETTSEEEEE
T ss_pred             eEEEE----CCCEEEEE-cCCcEEEEEchhh------hccCccceeecceeeEEecCC-------C-EEEEECCCCEEEE
Confidence            99998    57899998 8899999999865      334455567788888876654       3 77778888 9999


Q ss_pred             ECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE------e---
Q 008363          262 DIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV------N---  332 (568)
Q Consensus       262 D~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~------~---  332 (568)
                      |+.+. ....    +...|++++|+|+|  ++.|..||+|++|+...        +..      ....++      .   
T Consensus       152 dl~~~-~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~--------~~~------~~k~~I~~Pp~~~~~~  210 (388)
T 1xip_A          152 DLRTK-STKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRN--------GEM------EKQFEFSLPSELEELP  210 (388)
T ss_dssp             ETTTC-CEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEET--------TEE------EEEEEECCCHHHHTSC
T ss_pred             EccCC-cccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCC--------ccc------cccceecCCccccccc
Confidence            99976 3332    34579999999999  78899999999998743        110      001233      2   


Q ss_pred             cCCCCEEEEEEecCCCEEEEEe
Q 008363          333 CSSFAIWSVQVSRLTGMVAYCS  354 (568)
Q Consensus       333 ~h~~~V~~l~~sp~~~~l~s~s  354 (568)
                      +|...|.+|+|.+++.+|++=+
T Consensus       211 ~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          211 VEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             TTTSEEEEEEESSSSEEEEEEE
T ss_pred             CCCeeEEEEEEecCCeEEEEEc
Confidence            4788999999999988887643

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.20  E-value=2.3e-09  Score=119.57  Aligned_cols=227  Identities=11%  Similarity=-0.058  Sum_probs=141.6

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCC-----CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGN-----GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG  176 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~d-----g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~  176 (568)
                      .+..++|||+|          ++||.++.+     ..|++||+.+++.+...                           .
T Consensus       164 ~~~~~~~SPDG----------~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~---------------------------~  206 (741)
T 1yr2_A          164 ALDAWAASDDG----------RLLAYSVQDGGSDWRTVKFVGVADGKPLADE---------------------------L  206 (741)
T ss_dssp             EEEEEEECTTS----------SEEEEEEEETTCSEEEEEEEETTTCCEEEEE---------------------------E
T ss_pred             EEEeEEECCCC----------CEEEEEEcCCCCceEEEEEEECCCCCCCCcc---------------------------C
Confidence            55689999999          788877654     35999999998765321                           0


Q ss_pred             CcCccceEEEEccCCCCCEEEEEeCCCe--------------EEEEEccCCCCCCCCceeEEee--CCCCCeeEEEEccC
Q 008363          177 GTQSIPLTMEWSTSPPHDYLLAGCHDGT--------------VALWKFVASDSSIDSRPLLCFS--ADTLPIRAVSWAPA  240 (568)
Q Consensus       177 h~~~V~~~v~~s~~~~g~~l~sgs~Dg~--------------I~iwd~~~~~~~~~~~~~~~~~--~h~~~V~~v~~~p~  240 (568)
                      +...+ ..++|+  |+ +.|+.++.|+.              |.+|++.+...    .....+.  .|...+..+.|+|+
T Consensus       207 ~~~~~-~~~~ws--pD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~----~~~lv~~~~~~~~~~~~~~~SpD  278 (741)
T 1yr2_A          207 KWVKF-SGLAWL--GN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS----ADQPVFATPELPKRGHGASVSSD  278 (741)
T ss_dssp             EEEES-CCCEES--TT-SEEEEEECCCC--------CCCCCEEEEEETTSCGG----GCEEEECCTTCTTCEEEEEECTT
T ss_pred             CCcee-ccEEEE--CC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCch----hCEEEeccCCCCeEEEEEEECCC
Confidence            11112 568999  88 88888887664              88999875521    1223333  33346889999999


Q ss_pred             CCCCCCCcEEEEEcC-----CC-EEEEECCCCCcc-eeeeCCCCCCeEEEEEcCCCCEEEEEeC----CCcEEEEEcccc
Q 008363          241 ESDSDSANVILTAGH-----GG-LKFWDIRDPFRP-LWDIHPAPKFIYGLDWLPDPGCVILSFD----DGAMRIVSLLKA  309 (568)
Q Consensus       241 ~~~~~~~~~las~s~-----d~-v~lwD~~~~~~~-~~~~~~h~~~i~~l~~sp~~~~l~s~~~----dg~I~lwd~~~~  309 (568)
                      |      ++|+..+.     .. |++||+.++... ...+..+...+.... +|+|..|+..+.    ++.|.+||+.. 
T Consensus       279 G------~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~-  350 (741)
T 1yr2_A          279 G------RWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG-  350 (741)
T ss_dssp             S------CEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS-
T ss_pred             C------CEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC-
Confidence            9      67665542     34 999999865222 444545555555553 489998888876    34599999843 


Q ss_pred             ccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC-CCeeeccCCCCCcceeeeecccC
Q 008363          310 AYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT-AKAVEKDHSRNRPMHFLCGSVTE  388 (568)
Q Consensus       310 ~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~s~~~  388 (568)
                             +..      .....+..+...+..+.|+ .+.++++...|+..+||.+. .+...+.............++++
T Consensus       351 -------~~~------~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~  416 (741)
T 1yr2_A          351 -------STP------RFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRP  416 (741)
T ss_dssp             -------SSC------EEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCB
T ss_pred             -------Ccc------ccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCC
Confidence                   110      1112344455567778887 56788888899988777654 23322222211122333345566


Q ss_pred             CCCceEE
Q 008363          389 DESAITV  395 (568)
Q Consensus       389 ~~~~i~~  395 (568)
                      ++..+.+
T Consensus       417 d~~~l~~  423 (741)
T 1yr2_A          417 GDRHAYL  423 (741)
T ss_dssp             TCSCEEE
T ss_pred             CCCEEEE
Confidence            6666553

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.19  E-value=3e-09  Score=106.57  Aligned_cols=180  Identities=10%  Similarity=0.104  Sum_probs=121.7

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCC---------------------------CcEEEEECCCCceeeEEeccCCcc
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGN---------------------------GSLEVWEVPLLRTMKAIYLSSMKE  155 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~d---------------------------g~V~iwd~~~~~~~~~l~~~~~~~  155 (568)
                      +..++|+|++          +.|+.++.+                           ..|.+||+.+++.+..+       
T Consensus       106 ~~~~~wspdg----------~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l-------  168 (347)
T 2gop_A          106 IRSLEWNEDS----------RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEF-------  168 (347)
T ss_dssp             EEEEEECTTS----------SEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEE-------
T ss_pred             ccceeECCCC----------CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeee-------
Confidence            5699999999          677777632                           56888898887653333       


Q ss_pred             CCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCC-------eEEEEEccCCCCCCCCceeEEeeCC
Q 008363          156 GTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDG-------TVALWKFVASDSSIDSRPLLCFSAD  228 (568)
Q Consensus       156 ~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg-------~I~iwd~~~~~~~~~~~~~~~~~~h  228 (568)
                                         .. . .+ ..++|+  |+| +++++..++       ...||.+.++      .. ..+..+
T Consensus       169 -------------------~~-~-~~-~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d~~------~~-~~l~~~  216 (347)
T 2gop_A          169 -------------------EK-P-RF-SSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWEDG------KE-EKMFEK  216 (347)
T ss_dssp             -------------------EE-E-TT-CEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEETT------EE-EEEEEE
T ss_pred             -------------------cC-C-Cc-ccccCC--CCe-EEEEEecccccccccccccEEEeCCC------ce-EEeccC
Confidence                               22 2 45 889999  888 888776652       4556655532      22 333334


Q ss_pred             CCCeeEEEEccCCCCCCCCcEEEEEcC--------CC-EEEEECCCCCcceeeeCCCCCCeEE-EEEcCCCCEEEEEeCC
Q 008363          229 TLPIRAVSWAPAESDSDSANVILTAGH--------GG-LKFWDIRDPFRPLWDIHPAPKFIYG-LDWLPDPGCVILSFDD  298 (568)
Q Consensus       229 ~~~V~~v~~~p~~~~~~~~~~las~s~--------d~-v~lwD~~~~~~~~~~~~~h~~~i~~-l~~sp~~~~l~s~~~d  298 (568)
                       ..+..+  +|+|      +.|+.++.        .. |.+||  ++ ........|...+.. +.|+ ++ .+++++.+
T Consensus       217 -~~~~~~--spdg------~~l~~~~~~~~~~~~~~~~l~~~d--~~-~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~  282 (347)
T 2gop_A          217 -VSFYAV--DSDG------ERILLYGKPEKKYMSEHNKLYIYD--GK-EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEE  282 (347)
T ss_dssp             -ESEEEE--EECS------SCEEEEECCSSSCCCSSCEEEEEC--SS-CEEESSTTCCSEEEEEEEET-TE-EEEEEEET
T ss_pred             -cceeeE--CCCC------CEEEEEEccccCCccccceEEEEC--CC-ceEeccccCCcccCCccEEc-Cc-EEEEEecC
Confidence             445544  8998      66665542        23 88888  33 334444556777886 9999 88 88888899


Q ss_pred             CcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeE-EEEEcC
Q 008363          299 GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTV-HRFQLT  365 (568)
Q Consensus       299 g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v-~iwd~~  365 (568)
                      +.++|| +..        |+.         ..+..+...|.+++|+|  .++++++.++.. .||.+.
T Consensus       283 ~~~~l~-~~~--------g~~---------~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          283 GSVNLY-IWD--------GEI---------KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             TEEEEE-EES--------SSE---------EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             CcEEEE-EcC--------Cce---------EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            999999 841        322         23444577899999999  677787777765 788775

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.15  E-value=4e-08  Score=95.72  Aligned_cols=199  Identities=5%  Similarity=-0.032  Sum_probs=137.1

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      .++++++.+++          .++++...++.|.+||.. +... .+..                        ..+...+
T Consensus        16 ~~~~i~~d~~g----------~l~v~~~~~~~v~~~d~~-~~~~-~~~~------------------------~~~~~~~   59 (299)
T 2z2n_A           16 GPYGITVSDKG----------KVWITQHKANMISCINLD-GKIT-EYPL------------------------PTPDAKV   59 (299)
T ss_dssp             CEEEEEECTTS----------CEEEEETTTTEEEEECTT-CCEE-EEEC------------------------SSTTCCE
T ss_pred             CccceEECCCC----------CEEEEecCCCcEEEEcCC-CCeE-EecC------------------------CcccCce
Confidence            45699999998          677766668899999988 4432 2100                        1122344


Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF  260 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l  260 (568)
                       .++++.  ++|.++++...++.|..||....      .....+..+...+.+|++.+++      .++++...++ |.+
T Consensus        60 -~~i~~~--~~g~l~v~~~~~~~i~~~~~~g~------~~~~~~~~~~~~~~~i~~~~~g------~l~v~~~~~~~i~~  124 (299)
T 2z2n_A           60 -MCLTIS--SDGEVWFTENAANKIGRITKKGI------IKEYTLPNPDSAPYGITEGPNG------DIWFTEMNGNRIGR  124 (299)
T ss_dssp             -EEEEEC--TTSCEEEEETTTTEEEEECTTSC------EEEEECSSTTCCEEEEEECTTS------CEEEEETTTTEEEE
T ss_pred             -eeEEEC--CCCCEEEeCCCCCeEEEECCCCc------EEEEeCCCcCCCceeeEECCCC------CEEEEecCCceEEE
Confidence             888887  78888777777899999997621      1111222345678999999988      7888877766 999


Q ss_pred             EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE
Q 008363          261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS  340 (568)
Q Consensus       261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~  340 (568)
                      ||. ++.........+...+..++++++++.+++...++.|..||. .        |+..      . ..+..+...+.+
T Consensus       125 ~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~--------g~~~------~-~~~~~~~~~~~~  187 (299)
T 2z2n_A          125 ITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-S--------GDIT------E-FKIPTPASGPVG  187 (299)
T ss_dssp             ECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T--------CCEE------E-EECSSTTCCEEE
T ss_pred             ECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C--------CcEE------E-eeCCCCCCccee
Confidence            998 442322333334556899999999987776666789999987 2        3221      0 112234456889


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363          341 VQVSRLTGMVAYCSADGTVHRFQLTAKAV  369 (568)
Q Consensus       341 l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~  369 (568)
                      +++++++.++++...++.|.+|+. ++..
T Consensus       188 i~~~~~g~l~v~~~~~~~i~~~~~-~g~~  215 (299)
T 2z2n_A          188 ITKGNDDALWFVEIIGNKIGRITT-SGEI  215 (299)
T ss_dssp             EEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred             EEECCCCCEEEEccCCceEEEECC-CCcE
Confidence            999999988777777889999998 5544

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.15  E-value=3.6e-08  Score=96.79  Aligned_cols=238  Identities=9%  Similarity=0.036  Sum_probs=148.6

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      ..-...|+|+..         .++++...++.|..||..++... .+                           .....+
T Consensus        14 ~~Egp~w~~~~~---------~l~~~d~~~~~i~~~d~~~~~~~-~~---------------------------~~~~~~   56 (297)
T 3g4e_A           14 CGESPVWEEVSN---------SLLFVDIPAKKVCRWDSFTKQVQ-RV---------------------------TMDAPV   56 (297)
T ss_dssp             BEEEEEEETTTT---------EEEEEETTTTEEEEEETTTCCEE-EE---------------------------ECSSCE
T ss_pred             cccCCeEECCCC---------EEEEEECCCCEEEEEECCCCcEE-EE---------------------------eCCCce
Confidence            445788999653         57777778899999999885542 21                           112344


Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC--CCCCeeEEEEccCCCCCCCCcEEEEEcC----
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA--DTLPIRAVSWAPAESDSDSANVILTAGH----  255 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~~~~~~las~s~----  255 (568)
                       .+++|+  ++|+++++ . ++.|.+||..++..    ..+.....  ....+++++++|++      +++++...    
T Consensus        57 -~~i~~~--~dG~l~v~-~-~~~l~~~d~~~g~~----~~~~~~~~~~~~~~~~di~~d~dG------~l~~~~~~~~~~  121 (297)
T 3g4e_A           57 -SSVALR--QSGGYVAT-I-GTKFCALNWKEQSA----VVLATVDNDKKNNRFNDGKVDPAG------RYFAGTMAEETA  121 (297)
T ss_dssp             -EEEEEB--TTSSEEEE-E-TTEEEEEETTTTEE----EEEEECCTTCSSEEEEEEEECTTS------CEEEEEEECCSB
T ss_pred             -EEEEEC--CCCCEEEE-E-CCeEEEEECCCCcE----EEEEecCCCCCCCCCCCEEECCCC------CEEEecCCcccc
Confidence             889988  88885544 4 56899999876511    22222111  12347899999998      77766532    


Q ss_pred             ------CCEEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363          256 ------GGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       256 ------d~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                            ..-.||.+..... +..+..+....+.++|+|+++.|+.+ +.++.|.+||+..      .+|....   ...+
T Consensus       122 ~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~------~~G~~~~---~~~~  191 (297)
T 3g4e_A          122 PAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDL------QTGQISN---RRSV  191 (297)
T ss_dssp             TTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECT------TTCCEEE---EEEE
T ss_pred             cccccCCCcEEEEEECCCC-EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccC------CCCcccC---cEEE
Confidence                  1134554432212 22222223446899999999987665 4578999999742      1243210   0112


Q ss_pred             EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeeccc-CCCCceEEcccCCCC
Q 008363          329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVT-EDESAITVNTPLDNT  402 (568)
Q Consensus       329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~i~~~~~~~~~  402 (568)
                      ..+..+...+..++++++|.+.++...++.|.+||..++++....... .....|.++. +++..|.+.+.....
T Consensus       192 ~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p-~~~~t~~~f~g~d~~~L~vt~~~~~~  265 (297)
T 3g4e_A          192 YKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP-VDKTTSCCFGGKNYSEMYVTCARDGM  265 (297)
T ss_dssp             EECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS-SSBEEEEEEESGGGCEEEEEEBCTTC
T ss_pred             EECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC-CCCceEEEEeCCCCCEEEEEcCCcCC
Confidence            233334466789999999988888888889999999877665543222 2334455666 677777776654443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.13  E-value=1.2e-08  Score=101.87  Aligned_cols=205  Identities=5%  Similarity=-0.063  Sum_probs=136.1

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      ..+.+++++++          .++++...++.|.+||..+++....+.....                     .++... 
T Consensus        85 ~p~~i~~~~~g----------~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~---------------------~~~~~~-  132 (328)
T 3dsm_A           85 SPRYIHFLSDE----------KAYVTQIWDYRIFIINPKTYEITGYIECPDM---------------------DMESGS-  132 (328)
T ss_dssp             SEEEEEEEETT----------EEEEEEBSCSEEEEEETTTTEEEEEEECTTC---------------------CTTTCB-
T ss_pred             CCcEEEEeCCC----------eEEEEECCCCeEEEEECCCCeEEEEEEcCCc---------------------cccCCC-
Confidence            34589999988          5555555899999999999877655421100                     111112 


Q ss_pred             ceEEEEccCCCCCEEEEEe-CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC----
Q 008363          182 PLTMEWSTSPPHDYLLAGC-HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG----  256 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d----  256 (568)
                      |..+++.   ++.++++.. .+++|.+||+.+.      +.+..+... .....++++|++      ++++++..+    
T Consensus       133 p~~i~~~---~~~lyv~~~~~~~~v~viD~~t~------~~~~~i~~g-~~p~~i~~~~dG------~l~v~~~~~~~~~  196 (328)
T 3dsm_A          133 TEQMVQY---GKYVYVNCWSYQNRILKIDTETD------KVVDELTIG-IQPTSLVMDKYN------KMWTITDGGYEGS  196 (328)
T ss_dssp             CCCEEEE---TTEEEEEECTTCCEEEEEETTTT------EEEEEEECS-SCBCCCEECTTS------EEEEEBCCBCTTC
T ss_pred             cceEEEE---CCEEEEEcCCCCCEEEEEECCCC------eEEEEEEcC-CCccceEEcCCC------CEEEEECCCccCC
Confidence            2566653   444444443 4899999999876      556665442 346789999998      777776654    


Q ss_pred             ------C-EEEEECCCCCcceeeeCCC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363          257 ------G-LKFWDIRDPFRPLWDIHPA-PKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       257 ------~-v~lwD~~~~~~~~~~~~~h-~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                            + |.+||..+. +....+... ......++|+|++++|+++..  .|.+||+..        ++...    .  
T Consensus       197 ~~~~~~~~v~~id~~t~-~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t--------~~~~~----~--  259 (328)
T 3dsm_A          197 PYGYEAPSLYRIDAETF-TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEA--------DRVPV----R--  259 (328)
T ss_dssp             SSCBCCCEEEEEETTTT-EEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTC--------SSCCS----S--
T ss_pred             ccccCCceEEEEECCCC-eEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCC--------Cceee----e--
Confidence                  5 999999876 444444321 235799999999999988765  899999843        33211    0  


Q ss_pred             EEEecCCCCEEEEEEecC-CCEEEEE----eCCCeEEEEEcCCCeeecc
Q 008363          329 HLVNCSSFAIWSVQVSRL-TGMVAYC----SADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       329 ~~~~~h~~~V~~l~~sp~-~~~l~s~----s~Dg~v~iwd~~~~~~~~~  372 (568)
                      ..+..+......++++|+ +.++++.    ..++.|.+||.. +++...
T Consensus       260 ~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~  307 (328)
T 3dsm_A          260 PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDE  307 (328)
T ss_dssp             CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEE
T ss_pred             eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEE
Confidence            011112456789999995 5666666    578999999997 554443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.13  E-value=9e-09  Score=114.14  Aligned_cols=202  Identities=11%  Similarity=-0.009  Sum_probs=136.4

Q ss_pred             eEEEEccCCCCcccccCcccEEEEEeCCCc----------------EEEEECCCCceeeEEeccCCccCCCCceEEEeec
Q 008363          104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGS----------------LEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPV  167 (568)
Q Consensus       104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~----------------V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~  167 (568)
                      ..++|+|++          +.|+.++.++.                |++|++.+++....+...                
T Consensus       174 ~~~~wspDg----------~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~----------------  227 (710)
T 2xdw_A          174 SCMAWTHDG----------KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAE----------------  227 (710)
T ss_dssp             CCEEECTTS----------SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEEC----------------
T ss_pred             ceEEEEeCC----------CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEec----------------
Confidence            379999999          78888888776                999999886532111000                


Q ss_pred             ceecccccCCcCccceEEEEccCCCCCEEEEEeC-----CCeEEEEEccC------CCCCCCCceeEEeeCCCCCeeEEE
Q 008363          168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH-----DGTVALWKFVA------SDSSIDSRPLLCFSADTLPIRAVS  236 (568)
Q Consensus       168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~-----Dg~I~iwd~~~------~~~~~~~~~~~~~~~h~~~V~~v~  236 (568)
                            ...|...+ ..+.|+  |+|++|+.++.     +..|.+||+.+      +.     .....+..+...+.. .
T Consensus       228 ------~~~~~~~~-~~~~~S--pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-----~~~~~l~~~~~~~~~-~  292 (710)
T 2xdw_A          228 ------FPDEPKWM-GGAELS--DDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI-----LKWVKLIDNFEGEYD-Y  292 (710)
T ss_dssp             ------CTTCTTCE-EEEEEC--TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS-----CCCEEEECSSSSCEE-E
T ss_pred             ------cCCCCeEE-EEEEEc--CCCCEEEEEEEccCCCccEEEEEECcccccccCCc-----cceEEeeCCCCcEEE-E
Confidence                  02344445 788999  89999888765     56899999975      31     134556666666655 4


Q ss_pred             EccCCCCCCCCcEEE-EEcCC---C-EEEEECCCCCc-ceeeeCCCCC--CeEEEEEcCCCCEEEEEeCCCcEE--EEEc
Q 008363          237 WAPAESDSDSANVIL-TAGHG---G-LKFWDIRDPFR-PLWDIHPAPK--FIYGLDWLPDPGCVILSFDDGAMR--IVSL  306 (568)
Q Consensus       237 ~~p~~~~~~~~~~la-s~s~d---~-v~lwD~~~~~~-~~~~~~~h~~--~i~~l~~sp~~~~l~s~~~dg~I~--lwd~  306 (568)
                      |++++      ..|+ .+..+   . |.+||+.++.. ....+..|..  .+..++|++++.++++...|+..+  +||+
T Consensus       293 ~s~dg------~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~  366 (710)
T 2xdw_A          293 VTNEG------TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDL  366 (710)
T ss_dssp             EEEET------TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred             EeccC------CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence            78887      4444 44332   3 99999987632 2334444443  578899998777788888888654  4555


Q ss_pred             cccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEE-e---CCCeEEEEEcCCCe
Q 008363          307 LKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYC-S---ADGTVHRFQLTAKA  368 (568)
Q Consensus       307 ~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~-s---~Dg~v~iwd~~~~~  368 (568)
                      .        +|+.        +..+..+.+.|..+.++|++..|+.. +   ..++|++||+.++.
T Consensus       367 ~--------~g~~--------~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          367 A--------TGAL--------LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             T--------TCCE--------EEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             C--------CCCE--------EEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            2        2432        34666777888999999998655533 3   34789999998765

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.11  E-value=9.2e-08  Score=93.15  Aligned_cols=196  Identities=5%  Similarity=-0.090  Sum_probs=134.7

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      .+.++++.+++          .++++...++.|..|+.. +.. ..+..                        ......+
T Consensus        58 ~~~~i~~~~~g----------~l~v~~~~~~~i~~~~~~-g~~-~~~~~------------------------~~~~~~~  101 (299)
T 2z2n_A           58 KVMCLTISSDG----------EVWFTENAANKIGRITKK-GII-KEYTL------------------------PNPDSAP  101 (299)
T ss_dssp             CEEEEEECTTS----------CEEEEETTTTEEEEECTT-SCE-EEEEC------------------------SSTTCCE
T ss_pred             ceeeEEECCCC----------CEEEeCCCCCeEEEECCC-CcE-EEEeC------------------------CCcCCCc
Confidence            45599999998          677776668899999976 332 22100                        1122233


Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF  260 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l  260 (568)
                       .++++.  ++|.++++...++.|.+||. ++.     ........+...+..+++.+++      .++++...++ |..
T Consensus       102 -~~i~~~--~~g~l~v~~~~~~~i~~~d~-~g~-----~~~~~~~~~~~~~~~i~~~~~g------~l~v~~~~~~~i~~  166 (299)
T 2z2n_A          102 -YGITEG--PNGDIWFTEMNGNRIGRITD-DGK-----IREYELPNKGSYPSFITLGSDN------ALWFTENQNNAIGR  166 (299)
T ss_dssp             -EEEEEC--TTSCEEEEETTTTEEEEECT-TCC-----EEEEECSSTTCCEEEEEECTTS------CEEEEETTTTEEEE
T ss_pred             -eeeEEC--CCCCEEEEecCCceEEEECC-CCC-----EEEecCCCCCCCCceEEEcCCC------CEEEEeCCCCEEEE
Confidence             788887  78888887777889999998 331     1112223345678999999998      7888777666 999


Q ss_pred             EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE
Q 008363          261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS  340 (568)
Q Consensus       261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~  340 (568)
                      ||. ++......+..+...+..+++++++..+++...++.|.+||. .        ++..       ......+...+.+
T Consensus       167 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~--------g~~~-------~~~~~~~~~~~~~  229 (299)
T 2z2n_A          167 ITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-S--------GEIT-------EFKIPTPNARPHA  229 (299)
T ss_dssp             ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T--------CCEE-------EEECSSTTCCEEE
T ss_pred             EcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-C--------CcEE-------EEECCCCCCCcee
Confidence            998 442222223344556889999999986666666889999997 2        3221       0112234567899


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          341 VQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       341 l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      ++++++|.++++...++.|.+|+..
T Consensus       230 i~~~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          230 ITAGAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             EEECSTTCEEEEETTTTEEEEEETT
T ss_pred             EEECCCCCEEEeccCCceEEEECCC
Confidence            9999999877777678999999983

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.11  E-value=1.7e-08  Score=100.71  Aligned_cols=209  Identities=7%  Similarity=-0.076  Sum_probs=136.8

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD  202 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D  202 (568)
                      .++++...++.|.+||..+++.+..+..                           ... |..++++  +++.++++...+
T Consensus        55 ~lyv~~~~~~~v~viD~~t~~~~~~i~~---------------------------~~~-p~~i~~~--~~g~lyv~~~~~  104 (328)
T 3dsm_A           55 IGWIVVNNSHVIFAIDINTFKEVGRITG---------------------------FTS-PRYIHFL--SDEKAYVTQIWD  104 (328)
T ss_dssp             EEEEEEGGGTEEEEEETTTCCEEEEEEC---------------------------CSS-EEEEEEE--ETTEEEEEEBSC
T ss_pred             EEEEEEcCCCEEEEEECcccEEEEEcCC---------------------------CCC-CcEEEEe--CCCeEEEEECCC
Confidence            4667777789999999999888776511                           112 4788887  677444444489


Q ss_pred             CeEEEEEccCCCCCCCCceeEEeeCCC-----CCeeEEEEccCCCCCCCCcEEEEEc-CCC-EEEEECCCCCcceeeeCC
Q 008363          203 GTVALWKFVASDSSIDSRPLLCFSADT-----LPIRAVSWAPAESDSDSANVILTAG-HGG-LKFWDIRDPFRPLWDIHP  275 (568)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~~~h~-----~~V~~v~~~p~~~~~~~~~~las~s-~d~-v~lwD~~~~~~~~~~~~~  275 (568)
                      +.|.+||+.+.      +....+....     .....|++ ..+      .++++.. .++ |.+||+.+. ..+..+..
T Consensus       105 ~~v~~iD~~t~------~~~~~i~~g~~~~~~~~p~~i~~-~~~------~lyv~~~~~~~~v~viD~~t~-~~~~~i~~  170 (328)
T 3dsm_A          105 YRIFIINPKTY------EITGYIECPDMDMESGSTEQMVQ-YGK------YVYVNCWSYQNRILKIDTETD-KVVDELTI  170 (328)
T ss_dssp             SEEEEEETTTT------EEEEEEECTTCCTTTCBCCCEEE-ETT------EEEEEECTTCCEEEEEETTTT-EEEEEEEC
T ss_pred             CeEEEEECCCC------eEEEEEEcCCccccCCCcceEEE-ECC------EEEEEcCCCCCEEEEEECCCC-eEEEEEEc
Confidence            99999999866      5555554333     14567777 444      5666654 366 999999987 55554432


Q ss_pred             CCCCeEEEEEcCCCCEEEEEeCC----------CcEEEEEccccccCCCCCCCCccCccccceEEEecC-CCCEEEEEEe
Q 008363          276 APKFIYGLDWLPDPGCVILSFDD----------GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS-SFAIWSVQVS  344 (568)
Q Consensus       276 h~~~i~~l~~sp~~~~l~s~~~d----------g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h-~~~V~~l~~s  344 (568)
                       ......++++|+|++++++..+          +.|.+||..+        ++..        ..+... ......++|+
T Consensus       171 -g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t--------~~v~--------~~~~~~~g~~p~~la~~  233 (328)
T 3dsm_A          171 -GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET--------FTVE--------KQFKFKLGDWPSEVQLN  233 (328)
T ss_dssp             -SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT--------TEEE--------EEEECCTTCCCEEEEEC
T ss_pred             -CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCC--------CeEE--------EEEecCCCCCceeEEEe
Confidence             2335688999999977766544          7899999843        3322        233322 2357899999


Q ss_pred             cCCCEEEEEeCCCeEEEEEcCCCeeeccCC-C--CCcceeeeecccCCCCceEEc
Q 008363          345 RLTGMVAYCSADGTVHRFQLTAKAVEKDHS-R--NRPMHFLCGSVTEDESAITVN  396 (568)
Q Consensus       345 p~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~-~--~~~~~~~~~s~~~~~~~i~~~  396 (568)
                      |++++|.++..  .|.+||+.++++..... .  ...|.  ..++++++..+.+.
T Consensus       234 ~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~--gi~vdp~~g~lyva  284 (328)
T 3dsm_A          234 GTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYY--GLTVNPNNGEVYVA  284 (328)
T ss_dssp             TTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEE--EEEECTTTCCEEEE
T ss_pred             cCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceE--EEEEcCCCCeEEEE
Confidence            99988888765  89999998876542211 1  12222  33566655555544

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.11  E-value=3.4e-08  Score=105.78  Aligned_cols=192  Identities=9%  Similarity=0.027  Sum_probs=137.8

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD  202 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D  202 (568)
                      .++++...+++|.++|..+++.+..+..                         +  .. +..+.++  |+|+++++++.|
T Consensus       168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~-------------------------g--~~-p~~v~~S--pDGr~lyv~~~d  217 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTYEIKTVLDT-------------------------G--YA-VHISRLS--ASGRYLFVIGRD  217 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEEC-------------------------S--SC-EEEEEEC--TTSCEEEEEETT
T ss_pred             eEEEEeCCCCeEEEEECCCCeEEEEEeC-------------------------C--CC-ccceEEC--CCCCEEEEEcCC
Confidence            5677777899999999999888766511                         1  12 2678888  899999999999


Q ss_pred             CeEEEEEcc--CCCCCCCCceeEEeeCCCCCeeEEEEc----cCCCCCCCCcEEEEEcCC-C-EEEEECCCCCcceeeeC
Q 008363          203 GTVALWKFV--ASDSSIDSRPLLCFSADTLPIRAVSWA----PAESDSDSANVILTAGHG-G-LKFWDIRDPFRPLWDIH  274 (568)
Q Consensus       203 g~I~iwd~~--~~~~~~~~~~~~~~~~h~~~V~~v~~~----p~~~~~~~~~~las~s~d-~-v~lwD~~~~~~~~~~~~  274 (568)
                      +.|.+||+.  +.      +.+..+.... ....++|+    |+|      +++++++.. + |.++|..+. .++..+.
T Consensus       218 g~V~viD~~~~t~------~~v~~i~~G~-~P~~ia~s~~~~pDG------k~l~v~n~~~~~v~ViD~~t~-~~~~~i~  283 (567)
T 1qks_A          218 GKVNMIDLWMKEP------TTVAEIKIGS-EARSIETSKMEGWED------KYAIAGAYWPPQYVIMDGETL-EPKKIQS  283 (567)
T ss_dssp             SEEEEEETTSSSC------CEEEEEECCS-EEEEEEECCSTTCTT------TEEEEEEEETTEEEEEETTTC-CEEEEEE
T ss_pred             CeEEEEECCCCCC------cEeEEEecCC-CCceeEEccccCCCC------CEEEEEEccCCeEEEEECCCC-cEEEEEe
Confidence            999999995  43      5666665533 36799999    688      777777664 5 999998876 5554443


Q ss_pred             C----------CCC-CeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEE
Q 008363          275 P----------APK-FIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQ  342 (568)
Q Consensus       275 ~----------h~~-~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~  342 (568)
                      .          |.. .+..+..++++..++.. ..+|.|.++|.....        .+      .+..+ ........+.
T Consensus       284 ~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~--------~~------~v~~i-~~~~~~~d~~  348 (567)
T 1qks_A          284 TRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN--------NL------KTTEI-SAERFLHDGG  348 (567)
T ss_dssp             CCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS--------EE------EEEEE-ECCSSEEEEE
T ss_pred             ccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc--------cc------eeeee-eccccccCce
Confidence            1          222 57788999987665554 557999999985421        10      11222 2334567889


Q ss_pred             EecCCCEEEEEe-CCCeEEEEEcCCCeeeccC
Q 008363          343 VSRLTGMVAYCS-ADGTVHRFQLTAKAVEKDH  373 (568)
Q Consensus       343 ~sp~~~~l~s~s-~Dg~v~iwd~~~~~~~~~~  373 (568)
                      |+|++++|+++. .++.|.++|+.++++....
T Consensus       349 ~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i  380 (567)
T 1qks_A          349 LDGSHRYFITAANARNKLVVIDTKEGKLVAIE  380 (567)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             ECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE
Confidence            999999877665 6789999999998776543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.09  E-value=1e-07  Score=101.99  Aligned_cols=198  Identities=15%  Similarity=0.093  Sum_probs=134.2

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECC--CCceeeEEeccCCccCCCCceEEEeecceecccccCCcC
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVP--LLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ  179 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~--~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~  179 (568)
                      .++.+.|+|++          ++|++++.|+.|.+||+.  +++.+..+..                         + . 
T Consensus       198 ~p~~v~~SpDG----------r~lyv~~~dg~V~viD~~~~t~~~v~~i~~-------------------------G-~-  240 (567)
T 1qks_A          198 AVHISRLSASG----------RYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-------------------------G-S-  240 (567)
T ss_dssp             CEEEEEECTTS----------CEEEEEETTSEEEEEETTSSSCCEEEEEEC-------------------------C-S-
T ss_pred             CccceEECCCC----------CEEEEEcCCCeEEEEECCCCCCcEeEEEec-------------------------C-C-
Confidence            34589999999          799999999999999996  6666555411                         1 1 


Q ss_pred             ccceEEEEcc--CCCCCEEEEEeC-CCeEEEEEccCCCCCCCCceeEEeeC----------C-CCCeeEEEEccCCCCCC
Q 008363          180 SIPLTMEWST--SPPHDYLLAGCH-DGTVALWKFVASDSSIDSRPLLCFSA----------D-TLPIRAVSWAPAESDSD  245 (568)
Q Consensus       180 ~V~~~v~~s~--~~~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~----------h-~~~V~~v~~~p~~~~~~  245 (568)
                      . |..++|++  .|+|+++++++. +++|.|+|..+.      +++..+..          | ...+..+.+++++    
T Consensus       241 ~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~------~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~----  309 (567)
T 1qks_A          241 E-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL------EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR----  309 (567)
T ss_dssp             E-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC------CEEEEEECCEECTTTCCEESCCCEEEEEECSSS----
T ss_pred             C-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCC------cEEEEEeccccccccccccCCCceEEEEEcCCC----
Confidence            1 37788872  137887776654 599999998765      56655432          1 2257888888886    


Q ss_pred             CCcEEEEEcCCC-EEEEECCCCCcc-eeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccC
Q 008363          246 SANVILTAGHGG-LKFWDIRDPFRP-LWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAG  322 (568)
Q Consensus       246 ~~~~las~s~d~-v~lwD~~~~~~~-~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~  322 (568)
                       +.++++...++ |.++|..+.... +..+ ........+.|+|++++++++. .++.|.++|+.+        ++.+  
T Consensus       310 -~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t--------~kl~--  377 (567)
T 1qks_A          310 -PEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE--------GKLV--  377 (567)
T ss_dssp             -SEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT--------TEEE--
T ss_pred             -CEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCC--------CcEE--
Confidence             36677777777 999999865322 2222 2344567899999999998876 478999999943        4432  


Q ss_pred             ccccceEEEe-----cCCCCEEEEEEecCC-CEEEEEe-CCCeEEEEEcCC
Q 008363          323 TKQQGLHLVN-----CSSFAIWSVQVSRLT-GMVAYCS-ADGTVHRFQLTA  366 (568)
Q Consensus       323 ~~~~~l~~~~-----~h~~~V~~l~~sp~~-~~l~s~s-~Dg~v~iwd~~~  366 (568)
                            ..+.     .|.+.-..+ ++|++ .+++++. .++.|.++|..+
T Consensus       378 ------~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          378 ------AIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             ------EEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             ------EEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCC
Confidence                  2222     243222222 68875 4445554 468999999976

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.09  E-value=3.5e-08  Score=97.12  Aligned_cols=231  Identities=7%  Similarity=-0.058  Sum_probs=142.8

Q ss_pred             eEEEEccCCCCcccccCcccEEEE-------EeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363          104 WDVKWKPYNAVDCKCKQRLGYLAV-------LLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG  176 (568)
Q Consensus       104 ~~v~~sp~~~~~~~~~~~~~~las-------~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~  176 (568)
                      .+++|++++          .++++       +..++.|.+||..+++..... ..                     ...+
T Consensus        21 ~~~~~~~~g----------~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-~~---------------------~~~~   68 (314)
T 1pjx_A           21 EGPVFDKNG----------DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC-KP---------------------EVNG   68 (314)
T ss_dssp             EEEEECTTS----------CEEEEETTCEETTEECCEEEEECTTTCCEEEEE-CC---------------------EETT
T ss_pred             cCceECCCC----------CEEEEEeccccCCCCCCEEEEEeCCCCcEEEEE-ec---------------------ccCC
Confidence            489999888          67777       577899999998876643221 00                     0012


Q ss_pred             CcCccceEEEEccCCC-CCEEEEEeCCCeEEEEEccCCCCCCCCceeEE-eeC----CCCCeeEEEEccCCCCCCCCcEE
Q 008363          177 GTQSIPLTMEWSTSPP-HDYLLAGCHDGTVALWKFVASDSSIDSRPLLC-FSA----DTLPIRAVSWAPAESDSDSANVI  250 (568)
Q Consensus       177 h~~~V~~~v~~s~~~~-g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~-~~~----h~~~V~~v~~~p~~~~~~~~~~l  250 (568)
                      +...+ .+++++  ++ |.+++ ++..+.|.+||.. +      ..... ...    +...+.++++++++      +++
T Consensus        69 ~~~~~-~~i~~~--~~~g~l~v-~~~~~~l~~~d~~-g------~~~~~~~~~~~~~~~~~~~~i~~d~~g------~l~  131 (314)
T 1pjx_A           69 YGGIP-AGCQCD--RDANQLFV-ADMRLGLLVVQTD-G------TFEEIAKKDSEGRRMQGCNDCAFDYEG------NLW  131 (314)
T ss_dssp             EECCE-EEEEEC--SSSSEEEE-EETTTEEEEEETT-S------CEEECCSBCTTSCBCBCCCEEEECTTS------CEE
T ss_pred             CCCCC-ceEEEe--cCCCcEEE-EECCCCEEEEeCC-C------CEEEEEeccCCCccccCCcCEEECCCC------CEE
Confidence            33444 889988  77 65444 4445578999987 5      22221 111    12358899999998      788


Q ss_pred             EEEcCC---------------C-EEEEECCCCCcceeeeCCCCCCeEEEEEc----CCCCEEEEE-eCCCcEEEEEcccc
Q 008363          251 LTAGHG---------------G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWL----PDPGCVILS-FDDGAMRIVSLLKA  309 (568)
Q Consensus       251 as~s~d---------------~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~s----p~~~~l~s~-~~dg~I~lwd~~~~  309 (568)
                      ++...+               + |..||.. + .... +..+......++|+    |+++.|+.+ ..++.|.+||+.. 
T Consensus       132 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~-  207 (314)
T 1pjx_A          132 ITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G-QMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG-  207 (314)
T ss_dssp             EEECBCBCTTSCCCBTTSSSCEEEEEECTT-S-CEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE-
T ss_pred             EEecCcccccccccccccCCCCeEEEECCC-C-CEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC-
Confidence            777654               4 7777765 3 2222 22223446889999    999777666 4578999999841 


Q ss_pred             ccCCCCCCCCccCccccceEEEecCC-CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccC
Q 008363          310 AYDVPATGKPFAGTKQQGLHLVNCSS-FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTE  388 (568)
Q Consensus       310 ~~~~~~~g~~~~~~~~~~l~~~~~h~-~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~  388 (568)
                            .|+..   ....+..+..+. ..+..++++++|.++++...++.|.+||..++........ ......+..+++
T Consensus       208 ------~g~~~---~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~~i~~~~  277 (314)
T 1pjx_A          208 ------PAKIE---NKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC-PFEKPSNLHFKP  277 (314)
T ss_dssp             ------TTEEE---EEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC-SSSCEEEEEECT
T ss_pred             ------CCccc---cceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeC-CCCCceeEEECC
Confidence                  12210   001122333443 5678899999999888888899999999975543322111 112233445566


Q ss_pred             CCCceEEcc
Q 008363          389 DESAITVNT  397 (568)
Q Consensus       389 ~~~~i~~~~  397 (568)
                      ++..+.+.+
T Consensus       278 dg~~l~v~~  286 (314)
T 1pjx_A          278 QTKTIFVTE  286 (314)
T ss_dssp             TSSEEEEEE
T ss_pred             CCCEEEEEe
Confidence            776555543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.04  E-value=3e-09  Score=107.79  Aligned_cols=150  Identities=11%  Similarity=0.082  Sum_probs=110.1

Q ss_pred             ccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCC-----CCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363          180 SIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASD-----SSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG  254 (568)
Q Consensus       180 ~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~-----~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s  254 (568)
                      .+ ..|+++  +...+|++|+.++ +.+|++..-.     ......+.... .+.. |+.|+|  ++      .+|+++ 
T Consensus        39 ~~-nlLais--~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~------~~L~v~-  103 (388)
T 1xip_A           39 SL-QNLDIS--NSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HG------DQVLVS-  103 (388)
T ss_dssp             CC-BCEEEE--TTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ET------TEEEEE-
T ss_pred             cc-cEEEEc--CCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CC------CEEEEE-
Confidence            34 778888  7788999999885 5669975331     00001232333 3566 999999  66      788888 


Q ss_pred             CCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec
Q 008363          255 HGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC  333 (568)
Q Consensus       255 ~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~  333 (568)
                      .++ |++||+++. ........|...+.++.+.+.  .+++++.||.|.+||+..        +..            ..
T Consensus       104 ~~~~l~v~dv~sl-~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~--------~~~------------~~  160 (388)
T 1xip_A          104 TRNALYSLDLEEL-SEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRT--------KST------------KQ  160 (388)
T ss_dssp             ESSEEEEEESSST-TCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTT--------CCE------------EE
T ss_pred             cCCcEEEEEchhh-hccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccC--------Ccc------------cc
Confidence            666 999999977 344455566777888887754  388889999999999953        221            11


Q ss_pred             CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363          334 SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV  369 (568)
Q Consensus       334 h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~  369 (568)
                      +...|++++|||+|  ++.|..||.+++|+.....+
T Consensus       161 ~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~  194 (388)
T 1xip_A          161 LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEM  194 (388)
T ss_dssp             EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEE
T ss_pred             ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccc
Confidence            45689999999999  78899999999999887764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.03  E-value=9e-08  Score=94.18  Aligned_cols=198  Identities=10%  Similarity=0.045  Sum_probs=128.2

Q ss_pred             eeeEEEEccC-CCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC-CcC
Q 008363          102 VAWDVKWKPY-NAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG-GTQ  179 (568)
Q Consensus       102 ~v~~v~~sp~-~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~-h~~  179 (568)
                      .+..++++++ +          .+++ ++..+.|.+||.. ++.........                      .+ ...
T Consensus        72 ~~~~i~~~~~~g----------~l~v-~~~~~~l~~~d~~-g~~~~~~~~~~----------------------~~~~~~  117 (314)
T 1pjx_A           72 IPAGCQCDRDAN----------QLFV-ADMRLGLLVVQTD-GTFEEIAKKDS----------------------EGRRMQ  117 (314)
T ss_dssp             CEEEEEECSSSS----------EEEE-EETTTEEEEEETT-SCEEECCSBCT----------------------TSCBCB
T ss_pred             CCceEEEecCCC----------cEEE-EECCCCEEEEeCC-CCEEEEEeccC----------------------CCcccc
Confidence            3459999999 6          4444 4444579999988 55432100000                      11 122


Q ss_pred             ccceEEEEccCCCCCEEEEEeCC---------------CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEc----cC
Q 008363          180 SIPLTMEWSTSPPHDYLLAGCHD---------------GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWA----PA  240 (568)
Q Consensus       180 ~V~~~v~~s~~~~g~~l~sgs~D---------------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~----p~  240 (568)
                      .+ .++++.  ++|.++++...+               +.|..|+.. +      .... +..+......++|+    ++
T Consensus       118 ~~-~~i~~d--~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g------~~~~-~~~~~~~~~~i~~~~~~d~d  186 (314)
T 1pjx_A          118 GC-NDCAFD--YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G------QMIQ-VDTAFQFPNGIAVRHMNDGR  186 (314)
T ss_dssp             CC-CEEEEC--TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S------CEEE-EEEEESSEEEEEEEECTTSC
T ss_pred             CC-cCEEEC--CCCCEEEEecCcccccccccccccCCCCeEEEECCC-C------CEEE-eccCCCCcceEEEecccCCC
Confidence            34 789988  788777776655               456666654 3      2222 22233457889999    98


Q ss_pred             CCCCCCCcEE-EEEcCCC-EEEEECC-CCC----cceeeeCCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccC
Q 008363          241 ESDSDSANVI-LTAGHGG-LKFWDIR-DPF----RPLWDIHPAP-KFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYD  312 (568)
Q Consensus       241 ~~~~~~~~~l-as~s~d~-v~lwD~~-~~~----~~~~~~~~h~-~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~  312 (568)
                      +      +.| ++...++ |.+||+. .+.    .....+..+. ..+..++++++|+++++...++.|.+||..     
T Consensus       187 g------~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~-----  255 (314)
T 1pjx_A          187 P------YQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD-----  255 (314)
T ss_dssp             E------EEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT-----
T ss_pred             C------CEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC-----
Confidence            7      544 5555556 9999986 331    1223343443 567899999999988887788999999984     


Q ss_pred             CCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEE-EEEeCCCeEEEEEcCC
Q 008363          313 VPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMV-AYCSADGTVHRFQLTA  366 (568)
Q Consensus       313 ~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l-~s~s~Dg~v~iwd~~~  366 (568)
                         +|+.+        ..+..+...+.+++|++++..| ++...++.|..|++..
T Consensus       256 ---~g~~~--------~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          256 ---GGQPK--------MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             ---CBSCS--------EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             ---CCcEe--------EEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence               24332        3555666789999999999844 5555678999999864

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.03  E-value=4.8e-08  Score=100.61  Aligned_cols=196  Identities=10%  Similarity=-0.014  Sum_probs=131.6

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      .+.|+|+|++          .++++...++.|++||..++......                          .. ... +
T Consensus       133 P~~la~d~~g----------~lyv~d~~~~~I~~id~~~g~~~~~~--------------------------~~-~~~-~  174 (409)
T 3hrp_A          133 MWGIAAVGNN----------TVLAYQRDDPRVRLISVDDNKVTTVH--------------------------PG-FKG-G  174 (409)
T ss_dssp             EEEEEECSTT----------EEEEEETTTTEEEEEETTTTEEEEEE--------------------------ET-CCB-C
T ss_pred             ceEEEEeCCC----------CEEEEecCCCcEEEEECCCCEEEEee--------------------------cc-CCC-C
Confidence            4489999998          77777777899999999886554332                          11 111 2


Q ss_pred             eEEEEccCCCCCEEEEEeCCC--eEEEEEccCCCCCCCCceeEEe---eC-CCCCeeEEEEcc-CCCCCCCCcEEEEEcC
Q 008363          183 LTMEWSTSPPHDYLLAGCHDG--TVALWKFVASDSSIDSRPLLCF---SA-DTLPIRAVSWAP-AESDSDSANVILTAGH  255 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~---~~-h~~~V~~v~~~p-~~~~~~~~~~las~s~  255 (568)
                      . ++|+  ++++.|+++..++  .|.+|+....      .....+   .. +...+.+++++| ++      .+++ +..
T Consensus       175 ~-ia~~--~~g~~l~~~d~~~~~~I~~~d~~~~------~~~~~~g~~~~~~~~~p~~iav~p~~g------~lyv-~d~  238 (409)
T 3hrp_A          175 K-PAVT--KDKQRVYSIGWEGTHTVYVYMKASG------WAPTRIGQLGSTFSGKIGAVALDETEE------WLYF-VDS  238 (409)
T ss_dssp             B-CEEC--TTSSEEEEEBSSTTCEEEEEEGGGT------TCEEEEEECCTTSCSCCCBCEECTTSS------EEEE-ECT
T ss_pred             c-eeEe--cCCCcEEEEecCCCceEEEEEcCCC------ceeEEeeeccchhcCCcEEEEEeCCCC------eEEE-EEC
Confidence            5 7888  8888998888866  7888887654      222222   12 456688999999 44      4555 656


Q ss_pred             CC-EEEEECCCCCcceee---eCCCCCCe--EEEEEcCCCCEEE-EEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363          256 GG-LKFWDIRDPFRPLWD---IHPAPKFI--YGLDWLPDPGCVI-LSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       256 d~-v~lwD~~~~~~~~~~---~~~h~~~i--~~l~~sp~~~~l~-s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                      ++ |+.||..+....+..   ..++...-  ..++|+|++..|+ +-..++.|+.|+..         |..         
T Consensus       239 ~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~---------g~~---------  300 (409)
T 3hrp_A          239 NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD---------GEC---------  300 (409)
T ss_dssp             TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT---------CCE---------
T ss_pred             CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC---------CCE---------
Confidence            67 999999876322220   12222222  3999999644454 44568899999873         221         


Q ss_pred             EEEecCC---------------CCEEEEEEecCCCEEEEEe-CCCeEEEEEcCCCeee
Q 008363          329 HLVNCSS---------------FAIWSVQVSRLTGMVAYCS-ADGTVHRFQLTAKAVE  370 (568)
Q Consensus       329 ~~~~~h~---------------~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~~~~~  370 (568)
                      ..+.++.               .....++|+++|.++++-+ .++.|+.|++.++.+.
T Consensus       301 ~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~  358 (409)
T 3hrp_A          301 EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS  358 (409)
T ss_dssp             EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE
T ss_pred             EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE
Confidence            2333322               3478999999999888877 8899999997666543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.02  E-value=1.4e-08  Score=102.90  Aligned_cols=205  Identities=9%  Similarity=-0.030  Sum_probs=126.2

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeC--CCcEEEEECCCCceeeE-EeccCC-------------ccCCCCceEEEee
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLG--NGSLEVWEVPLLRTMKA-IYLSSM-------------KEGTDPRFVKLEP  166 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~--dg~V~iwd~~~~~~~~~-l~~~~~-------------~~~~~~~~v~~~~  166 (568)
                      ...++|+|++          ++|+++..  +++|.+||+.+++.+.. +.....             +..+.+..+.++.
T Consensus       110 p~~i~~spdg----------~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~  179 (361)
T 2oiz_A          110 DGLFRQTTDG----------KFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTIN  179 (361)
T ss_dssp             GGGEEECTTS----------SEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEE
T ss_pred             cceEEECCCC----------CEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEE
Confidence            3489999999          78888763  68999999999887766 322110             1111122222222


Q ss_pred             cce---ec------ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCC--------
Q 008363          167 VFR---CS------MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADT--------  229 (568)
Q Consensus       167 ~~~---~~------~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~--------  229 (568)
                      ...   ..      ..+..+...  ..+.++  +++..++..+.++.|.++|+.....    .....+....        
T Consensus       180 ~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~--~~g~~~~~~~~~~~v~v~d~~~~~~----~~~~~~~~~~~~~~~~~~  251 (361)
T 2oiz_A          180 LGEDGKVASQSRSKQMFSVKDDP--IFIAPA--LDKDKAHFVSYYGNVYSADFSGDEV----KVDGPWSLLNDEDKAKNW  251 (361)
T ss_dssp             ECTTSSEEEEEECCCCSCTTTSC--BCSCCE--ECSSEEEEEBTTSEEEEEECSSSSC----EEEEEEESCCHHHHHTTC
T ss_pred             ECCCCcEeeeccccceEcCCCCc--eEEEec--ccCCEEEEEeCCCeEEEEEecCCCc----eecccccccCcccccccc
Confidence            110   00      000111111  112223  5566777778899999999875421    2222221110        


Q ss_pred             --CCeeEEEEccCCCCCCCCcEEEEEc----------CCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe
Q 008363          230 --LPIRAVSWAPAESDSDSANVILTAG----------HGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF  296 (568)
Q Consensus       230 --~~V~~v~~~p~~~~~~~~~~las~s----------~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~  296 (568)
                        .....++|+|++.     .++++.+          ... |.+||+.+. +.+..+..+.  +..|+|+|||++|++++
T Consensus       252 ~p~g~~~~a~~~dg~-----~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-~~v~~i~~~~--p~~ia~spdg~~l~v~n  323 (361)
T 2oiz_A          252 VPGGYNLVGLHRASG-----RMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-QRVARIPGRD--ALSMTIDQQRNLMLTLD  323 (361)
T ss_dssp             EECCSSCEEEETTTT-----EEEEEEESSCCTTCTTCCCSEEEEEETTTT-EEEEEEECTT--CCEEEEETTTTEEEEEC
T ss_pred             ccCCeeEEEEecCCC-----eEEEEEccCCCcccccCCCceEEEEECCCC-cEEEEEecCC--eeEEEECCCCCEEEEeC
Confidence              1122378999972     4444433          134 999999987 7777777666  89999999999999888


Q ss_pred             CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCC
Q 008363          297 DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG  348 (568)
Q Consensus       297 ~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~  348 (568)
                      . ++|.+||+.        ++++      +.+..+..+....+.++++|+|+
T Consensus       324 ~-~~v~v~D~~--------t~~l------~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          324 G-GNVNVYDIS--------QPEP------KLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             S-SCEEEEECS--------SSSC------EEEEEETTSCSSEEEEEECCCSC
T ss_pred             C-CeEEEEECC--------CCcc------eeeEEeccCCCCcEEEEecCCCC
Confidence            6 999999994        3511      22356556667778999999975

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.02  E-value=5.5e-09  Score=115.59  Aligned_cols=201  Identities=10%  Similarity=0.003  Sum_probs=132.4

Q ss_pred             eEEEEccCCCCcccccCcccEEEEEeCCCc-------------EEEEECCCCceeeEEeccCCccCCCCceEEEeeccee
Q 008363          104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGS-------------LEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRC  170 (568)
Q Consensus       104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~-------------V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~  170 (568)
                      ..++|+|++          +.|+.++.|..             |++|++.++.....+..                    
T Consensus       171 ~~~~wspDg----------~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~--------------------  220 (695)
T 2bkl_A          171 ATPKWTPDS----------KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH--------------------  220 (695)
T ss_dssp             CCCEECTTS----------SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE--------------------
T ss_pred             cceEEecCC----------CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE--------------------
Confidence            378999999          78999888776             99999998653211100                    


Q ss_pred             cccccCCcCccceEEEEccCCCCCEEEEEeCCC----eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCC
Q 008363          171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDG----TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDS  246 (568)
Q Consensus       171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg----~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~  246 (568)
                        ....|...+ ..+.|+  |+|++|+.++.++    .|.+|+..++       ....+..+...+....| +++     
T Consensus       221 --~~~~~~~~~-~~~~~S--pDG~~l~~~~~~~~~~~~l~~~~~~~~-------~~~~l~~~~~~~~~~~~-~~g-----  282 (695)
T 2bkl_A          221 --ERTGDPTTF-LQSDLS--RDGKYLFVYILRGWSENDVYWKRPGEK-------DFRLLVKGVGAKYEVHA-WKD-----  282 (695)
T ss_dssp             --CCCCCTTCE-EEEEEC--TTSCCEEEEEEETTTEEEEEEECTTCS-------SCEEEEECSSCCEEEEE-ETT-----
T ss_pred             --ecCCCCEEE-EEEEEC--CCCCEEEEEEeCCCCceEEEEEcCCCC-------ceEEeecCCCceEEEEe-cCC-----
Confidence              003444556 788999  8999888877666    5666654322       23444455666667766 676     


Q ss_pred             CcEEEEEcC---CC-EEEEECCCCCc--ceeeeCCC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCC
Q 008363          247 ANVILTAGH---GG-LKFWDIRDPFR--PLWDIHPA-PKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKP  319 (568)
Q Consensus       247 ~~~las~s~---d~-v~lwD~~~~~~--~~~~~~~h-~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~  319 (568)
                       .+++++..   ++ |.+||+.++..  ....+..+ ...+..++|+ ++..+++...|+..+||.+..       .|..
T Consensus       283 -~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~-------~g~~  353 (695)
T 2bkl_A          283 -RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATL-------KGKP  353 (695)
T ss_dssp             -EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEET-------TCCE
T ss_pred             -cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC-------CCCe
Confidence             55555542   35 99999987632  12223333 4457888998 667777788899999887642       2322


Q ss_pred             ccCccccceEEEecC-CCCEEEEEEecCCCEEEEEe----CCCeEEEEEcCCCee
Q 008363          320 FAGTKQQGLHLVNCS-SFAIWSVQVSRLTGMVAYCS----ADGTVHRFQLTAKAV  369 (568)
Q Consensus       320 ~~~~~~~~l~~~~~h-~~~V~~l~~sp~~~~l~s~s----~Dg~v~iwd~~~~~~  369 (568)
                              +..+..+ .+.|..+.++|++..|+...    ..++|++||+.++..
T Consensus       354 --------~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          354 --------VRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             --------EEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             --------eEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence                    2344444 56778888999987666332    347899999987654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.02  E-value=9.8e-09  Score=99.81  Aligned_cols=170  Identities=12%  Similarity=0.150  Sum_probs=123.6

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCC-CCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcce
Q 008363          192 PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADT-LPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPL  270 (568)
Q Consensus       192 ~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~  270 (568)
                      ++++|++++.|+.|.+||..++      +.+..+..+. ..+.++.+.|+|      ++|+ +..++|..||. ++ +.+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG------~~~w~~~~~~~~~~~~~~~~pdG------~ilv-s~~~~V~~~d~-~G-~~~   68 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTK------EIVWEYPLEKGWECNSVAATKAG------EILF-SYSKGAKMITR-DG-REL   68 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTT------EEEEEEECCTTCCCCEEEECTTS------CEEE-ECBSEEEEECT-TS-CEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCC------eEEEEeCCCccCCCcCeEECCCC------CEEE-eCCCCEEEECC-CC-CEE
Confidence            4579999999999999998877      7888887776 478999999999      8888 33334999999 56 677


Q ss_pred             eeeCCC-CCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccceEEEe------cCCCCEEEEE
Q 008363          271 WDIHPA-PKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN------CSSFAIWSVQ  342 (568)
Q Consensus       271 ~~~~~h-~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~------~h~~~V~~l~  342 (568)
                      +.+..+ ...+.++.+.|+|++|++.+. ++.|..+|.         +|+.++        .+.      .+......++
T Consensus        69 W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~---------~Gk~l~--------~~~~~~~~~~~~~~~~~v~  131 (276)
T 3no2_A           69 WNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM---------KGEVLS--------KTEFETGIERPHAQFRQIN  131 (276)
T ss_dssp             EEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT---------TSCEEE--------EEEECCSCSSGGGSCSCCE
T ss_pred             EEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC---------CCCEEE--------EEeccCCCCcccccccCce
Confidence            777654 346889999999999999887 777777765         365442        222      1222445667


Q ss_pred             EecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEc
Q 008363          343 VSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVN  396 (568)
Q Consensus       343 ~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~  396 (568)
                      +.++|.+|++...++.|..||.. ++..-.......++.  .....++..+...
T Consensus       132 ~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~--~~~~~~g~~~v~~  182 (276)
T 3no2_A          132 KNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFS--SAFLDNGDCLVAC  182 (276)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCE--EEECTTSCEEEEC
T ss_pred             ECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccc--eeEcCCCCEEEEe
Confidence            89999999999999999999998 665544333323332  2334555555544

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.00  E-value=3.7e-08  Score=108.82  Aligned_cols=230  Identities=12%  Similarity=0.084  Sum_probs=141.2

Q ss_pred             ccCCceeeEEEEccCCCCcccccCcccEEEEEe-----CCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363           97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLL-----GNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS  171 (568)
Q Consensus        97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s-----~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~  171 (568)
                      +|.. .+..++|||++          ++||.+.     ....|+|||+.+++.+...               +       
T Consensus       126 ~~~~-~l~~~~~SpDg----------~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~---------------~-------  172 (693)
T 3iuj_A          126 DGTT-ALDQLSFSRDG----------RILAYSLSLAGSDWREIHLMDVESKQPLETP---------------L-------  172 (693)
T ss_dssp             TSCC-EEEEEEECTTS----------SEEEEEEECSSCCEEEEEEEETTTCSEEEEE---------------E-------
T ss_pred             CCcE-EEEEEEECCCC----------CEEEEEEecCCCceEEEEEEECCCCCCCccc---------------c-------
Confidence            3444 56689999999          6777433     2357999999998765321               0       


Q ss_pred             ccccCCcCccceEEEEccCCCCCEEEEEeCCCe-------------EEEEEccCCCCCCCCceeEEe--eC-CCCCeeEE
Q 008363          172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGT-------------VALWKFVASDSSIDSRPLLCF--SA-DTLPIRAV  235 (568)
Q Consensus       172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~-------------I~iwd~~~~~~~~~~~~~~~~--~~-h~~~V~~v  235 (568)
                         .+  ... ..++|+   ||+.|+.++.+..             |.+|++.+...    .....+  .. |...+..+
T Consensus       173 ---~~--~k~-~~~~Ws---Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~----~~~~v~~~~~~~~~~~~~~  239 (693)
T 3iuj_A          173 ---KD--VKF-SGISWL---GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQE----DDRLVFGAIPAQHHRYVGA  239 (693)
T ss_dssp             ---EE--EES-CCCEEE---TTTEEEEEESSCCC-------CCCCEEEEEETTSCGG----GCEEEESCSGGGCCSEEEE
T ss_pred             ---CC--cee-ccEEEe---CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcc----cceEEEecCCCCCeEEEEE
Confidence               11  011 467888   6778888887743             99999876521    223333  23 44567889


Q ss_pred             EEccCCCCCCCCcEE-EEEcC---CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC----CCcEEEEEc
Q 008363          236 SWAPAESDSDSANVI-LTAGH---GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD----DGAMRIVSL  306 (568)
Q Consensus       236 ~~~p~~~~~~~~~~l-as~s~---d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~----dg~I~lwd~  306 (568)
                      .|+|++      ++| ++.+.   .. |++||+.++......+..+....... |++++..|+..+.    .+.|..+|+
T Consensus       240 ~~SpDg------~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~  312 (693)
T 3iuj_A          240 TVTEDD------RFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDA  312 (693)
T ss_dssp             EECTTS------CEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEET
T ss_pred             EEcCCC------CEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeC
Confidence            999999      555 44432   35 99999987644555565666656555 6677776665544    357888998


Q ss_pred             cccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCC---eEEEEEcCCCeeeccCCCCCcceeee
Q 008363          307 LKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADG---TVHRFQLTAKAVEKDHSRNRPMHFLC  383 (568)
Q Consensus       307 ~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg---~v~iwd~~~~~~~~~~~~~~~~~~~~  383 (568)
                      ..        +..      ..+..+..|...+.  .|++++.+|+....++   .|++|++..+....- ..........
T Consensus       313 ~~--------~~~------~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l-~~p~~~~~~~  375 (693)
T 3iuj_A          313 AN--------PGP------AHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREV-ALPGLGSVSG  375 (693)
T ss_dssp             TS--------CCG------GGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEE-CCSSSSEEEE
T ss_pred             CC--------CCc------cccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEe-ecCCCceEEe
Confidence            43        221      11245566666655  8999998777766544   689999875543322 1111122222


Q ss_pred             ecccCCCCceEEc
Q 008363          384 GSVTEDESAITVN  396 (568)
Q Consensus       384 ~s~~~~~~~i~~~  396 (568)
                      .+.++++..+.+.
T Consensus       376 ~~~~~d~~~l~~~  388 (693)
T 3iuj_A          376 FNGKHDDPALYFG  388 (693)
T ss_dssp             CCCCTTCSCEEEE
T ss_pred             eecCCCCCEEEEE
Confidence            3445566665543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.00  E-value=4.4e-07  Score=88.26  Aligned_cols=195  Identities=6%  Similarity=-0.073  Sum_probs=133.7

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      ..+++++.+++          .++++...++.|.+|+.. ++... +..                        ..+...+
T Consensus        21 ~p~~i~~d~~g----------~l~v~~~~~~~v~~~~~~-~~~~~-~~~------------------------~~~~~~~   64 (300)
T 2qc5_A           21 GPYGITSSEDG----------KVWFTQHKANKISSLDQS-GRIKE-FEV------------------------PTPDAKV   64 (300)
T ss_dssp             CEEEEEECTTS----------CEEEEETTTTEEEEECTT-SCEEE-EEC------------------------SSTTCCE
T ss_pred             CcceeeECCCC----------CEEEEcCCCCeEEEECCC-CceEE-EEC------------------------CCCCCcc
Confidence            45589999998          677776678999999987 44332 100                        1122333


Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF  260 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l  260 (568)
                       .++++.  ++|.++++...++.|..||.. +.     .....+......+.++++.+++      .++++...++ |..
T Consensus        65 -~~i~~~--~~g~l~v~~~~~~~v~~~d~~-g~-----~~~~~~~~~~~~~~~i~~~~~g------~l~v~~~~~~~i~~  129 (300)
T 2qc5_A           65 -MCLIVS--SLGDIWFTENGANKIGKLSKK-GG-----FTEYPLPQPDSGPYGITEGLNG------DIWFTQLNGDRIGK  129 (300)
T ss_dssp             -EEEEEC--TTSCEEEEETTTTEEEEECTT-SC-----EEEEECSSTTCCEEEEEECSTT------CEEEEETTTTEEEE
T ss_pred             -eeEEEC--CCCCEEEEecCCCeEEEECCC-CC-----eEEecCCCCCCCCccceECCCC------CEEEEccCCCeEEE
Confidence             788877  788877777768899999977 41     1112222244678999999988      7888877666 999


Q ss_pred             EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE
Q 008363          261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS  340 (568)
Q Consensus       261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~  340 (568)
                      ||.. +......+......+..+++.++++..++...++.|..||..         |+..       ......+...+.+
T Consensus       130 ~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~---------g~~~-------~~~~~~~~~~~~~  192 (300)
T 2qc5_A          130 LTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT---------GKLE-------EYPLPTNAAAPVG  192 (300)
T ss_dssp             ECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT---------CCEE-------EEECSSTTCCEEE
T ss_pred             ECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC---------CcEE-------EeeCCCCCCCcce
Confidence            9987 422223333345568999999999966665557889999872         3221       0112234456889


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEc
Q 008363          341 VQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       341 l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                      +++++++.++++....+.|.+|+.
T Consensus       193 i~~d~~g~l~v~~~~~~~i~~~~~  216 (300)
T 2qc5_A          193 ITSGNDGALWFVEIMGNKIGRITT  216 (300)
T ss_dssp             EEECTTSSEEEEETTTTEEEEECT
T ss_pred             EEECCCCCEEEEccCCCEEEEEcC
Confidence            999999987777777788999998

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.98  E-value=4.3e-07  Score=88.34  Aligned_cols=195  Identities=4%  Similarity=-0.106  Sum_probs=133.7

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      .+..+++.+++          .++++...++.|.+||.. ++.. .+..                        ......+
T Consensus        63 ~~~~i~~~~~g----------~l~v~~~~~~~v~~~d~~-g~~~-~~~~------------------------~~~~~~~  106 (300)
T 2qc5_A           63 KVMCLIVSSLG----------DIWFTENGANKIGKLSKK-GGFT-EYPL------------------------PQPDSGP  106 (300)
T ss_dssp             CEEEEEECTTS----------CEEEEETTTTEEEEECTT-SCEE-EEEC------------------------SSTTCCE
T ss_pred             cceeEEECCCC----------CEEEEecCCCeEEEECCC-CCeE-EecC------------------------CCCCCCC
Confidence            45589999988          677766667889999987 4432 2110                        1112333


Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCcee-EEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EE
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPL-LCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LK  259 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~-~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~  259 (568)
                       .++++.  ++|.++++...++.|..||.. +      ... ..+......+.++++.+++      +++++...++ |.
T Consensus       107 -~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g------~~~~~~~~~~~~~~~~i~~d~~g------~l~v~~~~~~~i~  170 (300)
T 2qc5_A          107 -YGITEG--LNGDIWFTQLNGDRIGKLTAD-G------TIYEYDLPNKGSYPAFITLGSDN------ALWFTENQNNSIG  170 (300)
T ss_dssp             -EEEEEC--STTCEEEEETTTTEEEEECTT-S------CEEEEECSSTTCCEEEEEECTTS------SEEEEETTTTEEE
T ss_pred             -ccceEC--CCCCEEEEccCCCeEEEECCC-C------CEEEccCCCCCCCceeEEECCCC------CEEEEecCCCeEE
Confidence             788877  788887777778899999876 3      222 2233345678999999998      7777777666 99


Q ss_pred             EEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEE
Q 008363          260 FWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIW  339 (568)
Q Consensus       260 lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~  339 (568)
                      .||. ++.........+...+..+++++++...++....+.|.+||..         |+..       ...+..+...+.
T Consensus       171 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~---------g~~~-------~~~~~~~~~~~~  233 (300)
T 2qc5_A          171 RITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT---------GEIS-------EYDIPTPNARPH  233 (300)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT---------CCEE-------EEECSSTTCCEE
T ss_pred             EECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC---------CcEE-------EEECCCCCCCce
Confidence            9998 3422222233344568999999999866666667789999872         3221       011223456789


Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          340 SVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       340 ~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      +++++++|.++++...++.|..|+..
T Consensus       234 ~i~~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          234 AITAGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             EEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             EEEECCCCCEEEeccCCCeEEEECCC
Confidence            99999999877777677999999984

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.94  E-value=8.4e-07  Score=88.27  Aligned_cols=230  Identities=10%  Similarity=-0.033  Sum_probs=140.4

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      .....|+|++.         .++++...++.|.+||..+++.. .+                           .....+ 
T Consensus        51 ~egp~~~~~~~---------~l~~~d~~~~~i~~~d~~~~~~~-~~---------------------------~~~~~v-   92 (326)
T 2ghs_A           51 GEGPTFDPASG---------TAWWFNILERELHELHLASGRKT-VH---------------------------ALPFMG-   92 (326)
T ss_dssp             EEEEEEETTTT---------EEEEEEGGGTEEEEEETTTTEEE-EE---------------------------ECSSCE-
T ss_pred             CcCCeEeCCCC---------EEEEEECCCCEEEEEECCCCcEE-EE---------------------------ECCCcc-
Confidence            34788999863         57777777899999999875432 11                           012345 


Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC---C-CCCeeEEEEccCCCCCCCCcEEEEEcC---
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA---D-TLPIRAVSWAPAESDSDSANVILTAGH---  255 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~---h-~~~V~~v~~~p~~~~~~~~~~las~s~---  255 (568)
                      .++.|.  ++|+++++ +.+ .|.+||..++      ........   + ...+.+++++|++      .++++...   
T Consensus        93 ~~i~~~--~dg~l~v~-~~~-gl~~~d~~~g------~~~~~~~~~~~~~~~~~~~i~~d~~G------~l~v~~~~~~~  156 (326)
T 2ghs_A           93 SALAKI--SDSKQLIA-SDD-GLFLRDTATG------VLTLHAELESDLPGNRSNDGRMHPSG------ALWIGTMGRKA  156 (326)
T ss_dssp             EEEEEE--ETTEEEEE-ETT-EEEEEETTTC------CEEEEECSSTTCTTEEEEEEEECTTS------CEEEEEEETTC
T ss_pred             eEEEEe--CCCeEEEE-ECC-CEEEEECCCC------cEEEEeeCCCCCCCCCCCCEEECCCC------CEEEEeCCCcC
Confidence            888988  77766654 444 4999998765      22221111   1 2358899999998      67766542   


Q ss_pred             ---CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCC-CCccCccccceE
Q 008363          256 ---GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATG-KPFAGTKQQGLH  329 (568)
Q Consensus       256 ---d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g-~~~~~~~~~~l~  329 (568)
                         .+ |..+|  ++ .. ..+..+....+.++|+|+++.|+.+. .++.|.+||+..      .+| ....   ...+.
T Consensus       157 ~~~~~~l~~~~--~g-~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~------~~Gl~~~~---~~~~~  223 (326)
T 2ghs_A          157 ETGAGSIYHVA--KG-KV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA------RTGLPTGK---AEVFI  223 (326)
T ss_dssp             CTTCEEEEEEE--TT-EE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCT------TTCCBSSC---CEEEE
T ss_pred             CCCceEEEEEe--CC-cE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEccc------ccCCcccC---ceEEE
Confidence               13 66666  33 22 22222233468999999999876664 478999999841      023 2210   01122


Q ss_pred             EEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeeccc-CCCCceEEcccCCC
Q 008363          330 LVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVT-EDESAITVNTPLDN  401 (568)
Q Consensus       330 ~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~i~~~~~~~~  401 (568)
                      .+......+..++++++|.+.++...++.|.+|+.. ++....... ......+.++. +++..+.+.+....
T Consensus       224 ~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i~~-~~~~~~~~af~g~d~~~L~vt~~~~~  294 (326)
T 2ghs_A          224 DSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEV-PGKQTTCPAFIGPDASRLLVTSAREH  294 (326)
T ss_dssp             ECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEEC-SCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred             ECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEEEC-CCCCcEEEEEecCCCCEEEEEecCCC
Confidence            233344567889999999888877778899999984 333322111 12223445565 66677766554443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.94  E-value=1.1e-07  Score=95.33  Aligned_cols=218  Identities=7%  Similarity=-0.050  Sum_probs=132.1

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEe--CCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcC
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLL--GNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ  179 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s--~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~  179 (568)
                      ....|+++|++          +++++..  .++.++||.+.++. +..+                 |...  ....+|..
T Consensus        18 ~p~~va~~~~g----------~~~v~~~~~~~~~~~l~~~~~g~-~~~~-----------------p~~~--~~~~~~~~   67 (343)
T 2qe8_A           18 APGNITLTPDG----------RLFLSLHQFYQPEMQVAELTQDG-LIPF-----------------PPQS--GNAIITFD   67 (343)
T ss_dssp             CEEEEEECTTS----------CEEEEECGGGCCSCSEEEEETTE-EEES-----------------CCCC--SSCCCCCS
T ss_pred             CcceEEECCCC----------CEEEEeCCCCCCceEEEEECCCC-eecC-----------------CCcc--cCccccee
Confidence            44599999999          6777754  23435666655433 2111                 0000  01134555


Q ss_pred             ccceEEEEccCCCCCEEEEEeC-----CCeEEEEEccCCCCCCCCceeEEeeC------CCCCeeEEEEccCCCCCCCCc
Q 008363          180 SIPLTMEWSTSPPHDYLLAGCH-----DGTVALWKFVASDSSIDSRPLLCFSA------DTLPIRAVSWAPAESDSDSAN  248 (568)
Q Consensus       180 ~V~~~v~~s~~~~g~~l~sgs~-----Dg~I~iwd~~~~~~~~~~~~~~~~~~------h~~~V~~v~~~p~~~~~~~~~  248 (568)
                      .+ ..|++.  ++++++++-..     ++.|.+||+.++      +.+..+..      +...+..|++++++     ..
T Consensus        68 ~p-~gv~~d--~~g~L~v~D~g~~~~~~~~i~~~d~~tg------~~~~~~~~~~~~~~~~~~~~~v~vd~~~-----g~  133 (343)
T 2qe8_A           68 TV-LGIKSD--GNGIVWMLDNGNQSKSVPKLVAWDTLNN------QLSRVIYLPPPITLSNSFVNDLAVDLIH-----NF  133 (343)
T ss_dssp             CE-EEEEEC--SSSEEEEEECHHHHTSCCEEEEEETTTT------EEEEEEECCTTTSCTTCCCCEEEEETTT-----TE
T ss_pred             Ee-eEEEEc--CCCcEEEEcCCCCcCCCCeEEEEECCCC------eEEEEEECChhhcccccccceEEEecCC-----CE
Confidence            65 899988  77766665443     578999999866      55555432      23457899999864     15


Q ss_pred             EEEEEc---CCC-EEEEECCCCCcceeeeCCC-----------------------------CCCeEEEEEcCCCCEEEEE
Q 008363          249 VILTAG---HGG-LKFWDIRDPFRPLWDIHPA-----------------------------PKFIYGLDWLPDPGCVILS  295 (568)
Q Consensus       249 ~las~s---~d~-v~lwD~~~~~~~~~~~~~h-----------------------------~~~i~~l~~sp~~~~l~s~  295 (568)
                      ++++..   .+. |.+||+.++ .....+.+|                             ...++.|+|+|++++|+.+
T Consensus       134 ~yvtd~~~~~~~~i~v~d~~~g-~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~  212 (343)
T 2qe8_A          134 VYISDPAPDDKAALIRVDLQTG-LAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLS  212 (343)
T ss_dssp             EEEEECCSGGGCEEEEEETTTC-CEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEE
T ss_pred             EEEEcCccCCCCeEEEEECCCC-CEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEE
Confidence            556655   455 999999865 333333221                             1236889999999999988


Q ss_pred             eCCC-cEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee
Q 008363          296 FDDG-AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE  370 (568)
Q Consensus       296 ~~dg-~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~  370 (568)
                      ..++ .|+.++...........++..     ..+ ...++......++++++|.++++...++.|.+||..++.+.
T Consensus       213 ~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~-~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~  282 (343)
T 2qe8_A          213 PMHSTSMYRIKSADLSNLQLTDAELG-----SKI-ERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYK  282 (343)
T ss_dssp             ESSCSEEEEEEHHHHTCTTCCHHHHH-----TTC-EEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE
T ss_pred             eCCCCeEEEEEHHHhcCCCCChhhhh-----cce-EecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEE
Confidence            7655 555555422110000000000     011 12234445567899999999999999999999999555443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.91  E-value=8.3e-07  Score=90.08  Aligned_cols=213  Identities=14%  Similarity=0.051  Sum_probs=125.2

Q ss_pred             EEEEccCCCCcccccCcccEEEEEe----------CCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLL----------GNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s----------~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      .++++|++          ++|+++.          .++.|.+||..+.+.+..+.-..             +. .     
T Consensus        70 ~i~~spDg----------~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~-------------~~-~-----  120 (373)
T 2mad_H           70 NPVAAHSG----------SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD-------------AP-R-----  120 (373)
T ss_pred             CeEECCCC----------CEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCC-------------cc-c-----
Confidence            79999999          7888775          36789999999877766542110             00 0     


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeC--CCeEEEEEccCCCCCCCCceeEE-eeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCH--DGTVALWKFVASDSSIDSRPLLC-FSADTLPIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~-~~~h~~~V~~v~~~p~~~~~~~~~~la  251 (568)
                      ..+... |..+.|+  |+|++|++++.  ++.|.++| .++      +.+.. +.. ..   ++.+.|.+     +..++
T Consensus       121 ~~~g~~-p~~~~~s--pDG~~l~v~n~~~~~~v~viD-~t~------~~~~~~i~~-~~---~~~~~~~~-----~~~~~  181 (373)
T 2mad_H          121 FDVGPY-SWMNANT--PNNADLLFFQFAAGPAVGLVV-QGG------SSDDQLLSS-PT---CYHIHPGA-----PSTFY  181 (373)
T ss_pred             cccCCC-ccceEEC--CCCCEEEEEecCCCCeEEEEE-CCC------CEEeEEcCC-Cc---eEEEEeCC-----CceEE
Confidence            000111 3678888  99999998874  57899999 866      44444 321 11   12223332     12222


Q ss_pred             EEcCCC------------------------------------------------EEEEECCCCCcc-eeeeCC-------
Q 008363          252 TAGHGG------------------------------------------------LKFWDIRDPFRP-LWDIHP-------  275 (568)
Q Consensus       252 s~s~d~------------------------------------------------v~lwD~~~~~~~-~~~~~~-------  275 (568)
                      +.+.|+                                                |.+.|+...... +..+.-       
T Consensus       182 ~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~  261 (373)
T 2mad_H          182 LLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKA  261 (373)
T ss_pred             EEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccc
Confidence            333333                                                444444322100 011100       


Q ss_pred             ---CCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEE
Q 008363          276 ---APKFIYGLDWLPDPGCVILSFD----------DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQ  342 (568)
Q Consensus       276 ---h~~~i~~l~~sp~~~~l~s~~~----------dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~  342 (568)
                         .......+.++|++..|+++..          .+.|.++|+.+        ++.        +..+.. ....++++
T Consensus       262 ~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t--------~~v--------v~~i~~-g~~p~~i~  324 (373)
T 2mad_H          262 DTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV--------GQT--------SSQISL-GHDVDAIS  324 (373)
T ss_pred             cceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC--------CEE--------EEEEEC-CCCcCeEE
Confidence               0122334778888888877643          35788999843        433        245542 23578999


Q ss_pred             EecCCC-EEEEEe-CCCeEEEEEcCCCeeecc-CCCCCcceee
Q 008363          343 VSRLTG-MVAYCS-ADGTVHRFQLTAKAVEKD-HSRNRPMHFL  382 (568)
Q Consensus       343 ~sp~~~-~l~s~s-~Dg~v~iwd~~~~~~~~~-~~~~~~~~~~  382 (568)
                      |+|+|+ +++++. .++.|.+||+.+.+..+. ..-...|+.+
T Consensus       325 ~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~~vG~~P~~~  367 (373)
T 2mad_H          325 VAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVL  367 (373)
T ss_pred             ECCCCCeEEEEEcCCCCeEEEEECCCCCEEeeecCCCCCCcEE
Confidence            999998 777777 589999999998887765 3333444443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.85  E-value=7.1e-07  Score=87.46  Aligned_cols=189  Identities=10%  Similarity=0.097  Sum_probs=119.4

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      .+.+++|+|++          ++++ +. ++.|.+||..+++.........                      ......+
T Consensus        55 ~~~~i~~~~dG----------~l~v-~~-~~~l~~~d~~~g~~~~~~~~~~----------------------~~~~~~~  100 (297)
T 3g4e_A           55 PVSSVALRQSG----------GYVA-TI-GTKFCALNWKEQSAVVLATVDN----------------------DKKNNRF  100 (297)
T ss_dssp             CEEEEEEBTTS----------SEEE-EE-TTEEEEEETTTTEEEEEEECCT----------------------TCSSEEE
T ss_pred             ceEEEEECCCC----------CEEE-EE-CCeEEEEECCCCcEEEEEecCC----------------------CCCCCCC
Confidence            45599999999          6544 44 5679999998765432210000                      0011223


Q ss_pred             ceEEEEccCCCCCEEEEEeCC---------CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE-E
Q 008363          182 PLTMEWSTSPPHDYLLAGCHD---------GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI-L  251 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~D---------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l-a  251 (568)
                       ..+.+.  ++|+++++...+         ....||.+...     .... .+..+....+.++|+|++      +.| +
T Consensus       101 -~di~~d--~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-----g~~~-~~~~~~~~pngi~~spdg------~~lyv  165 (297)
T 3g4e_A          101 -NDGKVD--PAGRYFAGTMAEETAPAVLERHQGALYSLFPD-----HHVK-KYFDQVDISNGLDWSLDH------KIFYY  165 (297)
T ss_dssp             -EEEEEC--TTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-----SCEE-EEEEEESBEEEEEECTTS------CEEEE
T ss_pred             -CCEEEC--CCCCEEEecCCcccccccccCCCcEEEEEECC-----CCEE-EEeeccccccceEEcCCC------CEEEE
Confidence             778887  888866654322         33466666533     1222 222333457899999998      544 5


Q ss_pred             EEcCCC-EEEEECC--CCC----cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcc
Q 008363          252 TAGHGG-LKFWDIR--DPF----RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTK  324 (568)
Q Consensus       252 s~s~d~-v~lwD~~--~~~----~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~  324 (568)
                      +.+.++ |.+||+.  ++.    +.+..+..+......++++++|++.++....+.|..||..        +|+.+    
T Consensus       166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~--------tG~~~----  233 (297)
T 3g4e_A          166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV--------TGKRL----  233 (297)
T ss_dssp             EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT--------TCCEE----
T ss_pred             ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC--------CceEE----
Confidence            556566 9999973  332    1122333334567899999999877777778889999983        36443    


Q ss_pred             ccceEEEecCCCCEEEEEEe-cCCCEEEEEeC
Q 008363          325 QQGLHLVNCSSFAIWSVQVS-RLTGMVAYCSA  355 (568)
Q Consensus       325 ~~~l~~~~~h~~~V~~l~~s-p~~~~l~s~s~  355 (568)
                          ..+..+...+++++|. |+++.|+.++.
T Consensus       234 ----~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          234 ----QTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             ----EEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             ----EEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence                5666676789999998 88776655553

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.82  E-value=6.8e-07  Score=87.92  Aligned_cols=223  Identities=8%  Similarity=-0.046  Sum_probs=133.7

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      ......|+|++.         .++++...++.|..|+. ++. ...+                          ..+...+
T Consensus        46 ~~egp~~~~~g~---------~l~~~d~~~~~i~~~~~-~g~-~~~~--------------------------~~~~~~~   88 (305)
T 3dr2_A           46 WSEGPAWWEAQR---------TLVWSDLVGRRVLGWRE-DGT-VDVL--------------------------LDATAFT   88 (305)
T ss_dssp             SEEEEEEEGGGT---------EEEEEETTTTEEEEEET-TSC-EEEE--------------------------EESCSCE
T ss_pred             CccCCeEeCCCC---------EEEEEECCCCEEEEEeC-CCC-EEEE--------------------------eCCCCcc
Confidence            455889999983         37777778899999988 433 2222                          1122334


Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeE-EeeC-CCCCeeEEEEccCCCCCCCCcEEEE----EcC
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLL-CFSA-DTLPIRAVSWAPAESDSDSANVILT----AGH  255 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~-h~~~V~~v~~~p~~~~~~~~~~las----~s~  255 (568)
                       ..++|.  ++|+++++...++.|.+|+.. +.    ...+. ...+ ....+.+++++++|      .+++|    |..
T Consensus        89 -~gl~~d--~dG~l~v~~~~~~~v~~~~~~-g~----~~~~~~~~~~~~~~~~~~i~~d~dG------~l~~td~~~g~~  154 (305)
T 3dr2_A           89 -NGNAVD--AQQRLVHCEHGRRAITRSDAD-GQ----AHLLVGRYAGKRLNSPNDLIVARDG------AIWFTDPPFGLR  154 (305)
T ss_dssp             -EEEEEC--TTSCEEEEETTTTEEEEECTT-SC----EEEEECEETTEECSCCCCEEECTTS------CEEEECCSGGGS
T ss_pred             -ceeeEC--CCCCEEEEECCCCEEEEECCC-CC----EEEEEeccCCCccCCCCCEEECCCC------CEEEeCcCCCcc
Confidence             788988  888876666666889999975 31    11111 1111 12347789999999      78886    321


Q ss_pred             -------------CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCC------CcEEEEEccccccCCCC
Q 008363          256 -------------GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDD------GAMRIVSLLKAAYDVPA  315 (568)
Q Consensus       256 -------------d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d------g~I~lwd~~~~~~~~~~  315 (568)
                                   .+ |..||..++. .....  .....+.++|+|+++.|+.+...      +.|++||+..       
T Consensus       155 ~~~~~~~~~~~~~~~~v~~~d~~~g~-~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~-------  224 (305)
T 3dr2_A          155 KPSQGCPADPELAHHSVYRLPPDGSP-LQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD-------  224 (305)
T ss_dssp             CGGGSCCCCCSSSCEEEEEECSSSCC-CEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET-------
T ss_pred             ccccccccccccCCCeEEEEcCCCCc-EEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC-------
Confidence                         24 8888876552 22111  23456899999999988887665      7899999842       


Q ss_pred             CCCCccCccccceEEE-ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceE
Q 008363          316 TGKPFAGTKQQGLHLV-NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAIT  394 (568)
Q Consensus       316 ~g~~~~~~~~~~l~~~-~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~  394 (568)
                       +. +     .....+ .........++++++|.+.++. .+ .|.+|+.....+... .....+.-  ..+.+++..|.
T Consensus       225 -~~-l-----~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~~g~~~~~~-~~~~~~~~--~~f~~d~~~L~  292 (305)
T 3dr2_A          225 -GA-L-----HDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDSDGQLLGHI-PTPGTASN--CTFDQAQQRLF  292 (305)
T ss_dssp             -TE-E-----EEEEEEECCSSSCCCSEEECTTSCEEECC-SS-EEEEECTTSCEEEEE-ECSSCCCE--EEECTTSCEEE
T ss_pred             -CC-c-----cCCeEEEECCCCCCCeEEECCCCCEEEec-CC-cEEEECCCCCEEEEE-ECCCceeE--EEEeCCCCEEE
Confidence             11 1     001111 1123345678899999855444 44 499999864433322 11112222  23446666665


Q ss_pred             Ecc
Q 008363          395 VNT  397 (568)
Q Consensus       395 ~~~  397 (568)
                      +.+
T Consensus       293 it~  295 (305)
T 3dr2_A          293 ITG  295 (305)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.82  E-value=9.3e-07  Score=90.94  Aligned_cols=194  Identities=8%  Similarity=-0.053  Sum_probs=125.2

Q ss_pred             EEEccCCCCcccccCcccEEEEEeCCC--cEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC-CcCccc
Q 008363          106 VKWKPYNAVDCKCKQRLGYLAVLLGNG--SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG-GTQSIP  182 (568)
Q Consensus       106 v~~sp~~~~~~~~~~~~~~las~s~dg--~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~-h~~~V~  182 (568)
                      ++|+|++          +.|+++..++  .|.+|+...+.....+...                       .. +.... 
T Consensus       176 ia~~~~g----------~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~-----------------------~~~~~~~p-  221 (409)
T 3hrp_A          176 PAVTKDK----------QRVYSIGWEGTHTVYVYMKASGWAPTRIGQL-----------------------GSTFSGKI-  221 (409)
T ss_dssp             CEECTTS----------SEEEEEBSSTTCEEEEEEGGGTTCEEEEEEC-----------------------CTTSCSCC-
T ss_pred             eeEecCC----------CcEEEEecCCCceEEEEEcCCCceeEEeeec-----------------------cchhcCCc-
Confidence            8888888          6788887766  6888887654432221000                       11 22333 


Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEE--eeCCCCCe-e-EEEEccCCCCCCCCcEEEEEcCCC-
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLC--FSADTLPI-R-AVSWAPAESDSDSANVILTAGHGG-  257 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~--~~~h~~~V-~-~v~~~p~~~~~~~~~~las~s~d~-  257 (568)
                      .+++++  |++..|+++..++.|..||......    ..+..  ..++...- . .|+|+|++     ..++++-...+ 
T Consensus       222 ~~iav~--p~~g~lyv~d~~~~I~~~d~~~~~~----~~~~~~~~~g~~~~~P~~~ia~~p~~-----g~lyv~d~~~~~  290 (409)
T 3hrp_A          222 GAVALD--ETEEWLYFVDSNKNFGRFNVKTQEV----TLIKQLELSGSLGTNPGPYLIYYFVD-----SNFYMSDQNLSS  290 (409)
T ss_dssp             CBCEEC--TTSSEEEEECTTCEEEEEETTTCCE----EEEEECCCCSCCCCSSCCEEEEETTT-----TEEEEEETTTTE
T ss_pred             EEEEEe--CCCCeEEEEECCCcEEEEECCCCCE----EEEecccccCCCCCCccccEEEeCCC-----CEEEEEeCCCCE
Confidence            778887  6344566677789999999886511    11111  22222222 3 99999953     16777766667 


Q ss_pred             EEEEECCCCCcceeeeCCCC---------------CCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCcc
Q 008363          258 LKFWDIRDPFRPLWDIHPAP---------------KFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFA  321 (568)
Q Consensus       258 v~lwD~~~~~~~~~~~~~h~---------------~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~  321 (568)
                      |+.||....   +..+.++.               .....++++|+|+++++-. .++.|+.||+..        |..  
T Consensus       291 I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~--------G~v--  357 (409)
T 3hrp_A          291 VYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD--------GYV--  357 (409)
T ss_dssp             EEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT--------TEE--
T ss_pred             EEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC--------CEE--
Confidence            999998743   22222221               3468999999999777767 789999999632        322  


Q ss_pred             CccccceEEEecC---------------CCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          322 GTKQQGLHLVNCS---------------SFAIWSVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       322 ~~~~~~l~~~~~h---------------~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                             .++.++               -.....|++++++.++++-..++.|+.+.+
T Consensus       358 -------~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          358 -------STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             -------EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             -------EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence                   344443               245789999999888888888888888776

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.81  E-value=1e-09  Score=111.61  Aligned_cols=181  Identities=10%  Similarity=-0.015  Sum_probs=96.9

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD  202 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D  202 (568)
                      +.|++++.||.|+.||..+|+.+-.+..                            ..+ .+..+.  .++..+++++.|
T Consensus        10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~~----------------------------~~~-~s~p~~--~~g~~~v~~s~d   58 (369)
T 2hz6_A           10 TLLFVSTLDGSLHAVSKRTGSIKWTLKE----------------------------DPV-LQVPTH--VEEPAFLPDPND   58 (369)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEEC----------------------------CCS-CCCC-------CCEEECTTT
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEecC----------------------------CCc-eecceE--cCCCEEEEeCCC
Confidence            6899999999999999999987755411                            122 222222  456678888899


Q ss_pred             CeEEEEEccCCCCCCCCceeEEeeCCCCC-ee-EEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCC
Q 008363          203 GTVALWKFVASDSSIDSRPLLCFSADTLP-IR-AVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKF  279 (568)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~-V~-~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~  279 (568)
                      |.|..||..++      +.+..+..+... +. +..+. .+      ..+++++.++ |+.||..++ +.++.+..+.  
T Consensus        59 g~l~a~d~~tG------~~~w~~~~~~~~~~~~sp~~~-~~------~~v~~g~~dg~v~a~D~~tG-~~~w~~~~~~--  122 (369)
T 2hz6_A           59 GSLYTLGSKNN------EGLTKLPFTIPELVQASPCRS-SD------GILYMGKKQDIWYVIDLLTG-EKQQTLSSAF--  122 (369)
T ss_dssp             CCEEEC-----------CCSEECSCCHHHHHTTCSCC------------CCCCEEEEEEEEECCC---------------
T ss_pred             CEEEEEECCCC------ceeeeeeccCccccccCceEe-cC------CEEEEEeCCCEEEEEECCCC-cEEEEecCCC--
Confidence            99999999876      444444322110 10 00111 22      4666777777 999999988 6666665443  


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC---CEEEEEeCC
Q 008363          280 IYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT---GMVAYCSAD  356 (568)
Q Consensus       280 i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~---~~l~s~s~D  356 (568)
                        ...++|++..|++++.|+.|+.||.+        +|+.++        .+..+.  .....+..+.   ..+++++.|
T Consensus       123 --~~~~~p~~~~v~~~~~dg~v~a~d~~--------tG~~~W--------~~~~~~--~~~~~~~~~~~~~~~v~~~~~d  182 (369)
T 2hz6_A          123 --ADSLSPSTSLLYLGRTEYTITMYDTK--------TRELRW--------NATYFD--YAASLPEDDVDYKMSHFVSNGD  182 (369)
T ss_dssp             ------------EEEEEEEEEEECCCSS--------SSSCCC--------EEEEEE--ECCBCCCCCTTCCCCEEEEETS
T ss_pred             --cccccccCCEEEEEecCCEEEEEECC--------CCCEEE--------eEeccc--ccCccccCCccccceEEEECCC
Confidence              24567788899999999999999994        476653        222111  1122333332   567788999


Q ss_pred             CeEEEEEcCCCeee
Q 008363          357 GTVHRFQLTAKAVE  370 (568)
Q Consensus       357 g~v~iwd~~~~~~~  370 (568)
                      |.|+.||..+++..
T Consensus       183 g~v~a~d~~tG~~~  196 (369)
T 2hz6_A          183 GLVVTVDSESGDVL  196 (369)
T ss_dssp             CEEEEECTTTCCEE
T ss_pred             CEEEEEECCCCcEE
Confidence            99999999888654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.80  E-value=3.4e-07  Score=101.94  Aligned_cols=162  Identities=10%  Similarity=-0.013  Sum_probs=105.1

Q ss_pred             CccceEEEEccCCCCCEEEEEeCCC-----eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363          179 QSIPLTMEWSTSPPHDYLLAGCHDG-----TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA  253 (568)
Q Consensus       179 ~~V~~~v~~s~~~~g~~l~sgs~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~  253 (568)
                      ..+ ..+.|+  |+|++|+..+.++     .|.+||+.++.    ..+...+..+...+....+ |++      ..|+..
T Consensus       268 ~~~-~~~~~S--pDG~~l~~~~~~~~~~~~~l~~~d~~~~~----~~~~~~l~~~~~~~~~~~~-~dg------~~l~~~  333 (741)
T 1yr2_A          268 KRG-HGASVS--SDGRWVVITSSEGTDPVNTVHVARVTNGK----IGPVTALIPDLKAQWDFVD-GVG------DQLWFV  333 (741)
T ss_dssp             TCE-EEEEEC--TTSCEEEEEEECTTCSCCEEEEEEEETTE----ECCCEEEECSSSSCEEEEE-EET------TEEEEE
T ss_pred             eEE-EEEEEC--CCCCEEEEEEEccCCCcceEEEEECCCCC----CcccEEecCCCCceEEEEe-ccC------CEEEEE
Confidence            345 788998  8999888877554     89999997541    0114455555555555544 777      555555


Q ss_pred             cC----CC-EEEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccc
Q 008363          254 GH----GG-LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQG  327 (568)
Q Consensus       254 s~----d~-v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~  327 (568)
                      +.    +. |.+||+.++. .....+..+...+..++|+ ++..+++...|+..+||.+..       .|..        
T Consensus       334 s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~-------~g~~--------  397 (741)
T 1yr2_A          334 SGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDL-------DGKP--------  397 (741)
T ss_dssp             ECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEET-------TSCE--------
T ss_pred             ECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC-------CCCc--------
Confidence            43    24 9999998641 3333344455556778887 556667778899888887632       2322        


Q ss_pred             eEEEec-CCCCEEEEEEecCCCEEE-EEe---CCCeEEEEEcCCCeee
Q 008363          328 LHLVNC-SSFAIWSVQVSRLTGMVA-YCS---ADGTVHRFQLTAKAVE  370 (568)
Q Consensus       328 l~~~~~-h~~~V~~l~~sp~~~~l~-s~s---~Dg~v~iwd~~~~~~~  370 (568)
                      +..+.. +...|..+.++|++..|+ +.+   ..++|++||+.++...
T Consensus       398 ~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~  445 (741)
T 1yr2_A          398 AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTT  445 (741)
T ss_dssp             EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEE
T ss_pred             eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence            234443 356788999999986555 332   3478999999887643

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.76  E-value=3.6e-06  Score=83.67  Aligned_cols=187  Identities=8%  Similarity=-0.062  Sum_probs=115.9

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCC-cCc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGG-TQS  180 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h-~~~  180 (568)
                      .+.+++|+|++          .++++ +.+ .|.+||..+++..... ...                      .+. ...
T Consensus        91 ~v~~i~~~~dg----------~l~v~-~~~-gl~~~d~~~g~~~~~~-~~~----------------------~~~~~~~  135 (326)
T 2ghs_A           91 MGSALAKISDS----------KQLIA-SDD-GLFLRDTATGVLTLHA-ELE----------------------SDLPGNR  135 (326)
T ss_dssp             CEEEEEEEETT----------EEEEE-ETT-EEEEEETTTCCEEEEE-CSS----------------------TTCTTEE
T ss_pred             cceEEEEeCCC----------eEEEE-ECC-CEEEEECCCCcEEEEe-eCC----------------------CCCCCCC
Confidence            45699999998          56654 444 4999999876543211 100                      111 123


Q ss_pred             cceEEEEccCCCCCEEEEEeCC----CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE-EEEcC
Q 008363          181 IPLTMEWSTSPPHDYLLAGCHD----GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI-LTAGH  255 (568)
Q Consensus       181 V~~~v~~s~~~~g~~l~sgs~D----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l-as~s~  255 (568)
                      + ..+.++  ++|+++++...+    +...||.+..+      ... .+..+......++|+|++      +.| ++.+.
T Consensus       136 ~-~~i~~d--~~G~l~v~~~~~~~~~~~~~l~~~~~g------~~~-~~~~~~~~~~~i~~s~dg------~~lyv~~~~  199 (326)
T 2ghs_A          136 S-NDGRMH--PSGALWIGTMGRKAETGAGSIYHVAKG------KVT-KLFADISIPNSICFSPDG------TTGYFVDTK  199 (326)
T ss_dssp             E-EEEEEC--TTSCEEEEEEETTCCTTCEEEEEEETT------EEE-EEEEEESSEEEEEECTTS------CEEEEEETT
T ss_pred             C-CCEEEC--CCCCEEEEeCCCcCCCCceEEEEEeCC------cEE-EeeCCCcccCCeEEcCCC------CEEEEEECC
Confidence            4 788888  788776654421    23444444333      222 222233457899999998      555 44455


Q ss_pred             CC-EEEEECC--CC-C----cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccc
Q 008363          256 GG-LKFWDIR--DP-F----RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQG  327 (568)
Q Consensus       256 d~-v~lwD~~--~~-~----~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~  327 (568)
                      ++ |.+||+.  ++ .    ..+..+......+..++++++|.+.++...++.|.+||..         |+.        
T Consensus       200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~---------g~~--------  262 (326)
T 2ghs_A          200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD---------GNH--------  262 (326)
T ss_dssp             TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT---------CCE--------
T ss_pred             CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC---------CCE--------
Confidence            56 9999986  33 1    1122333344557899999999877777677889999872         333        


Q ss_pred             eEEEecCCCCEEEEEEe-cCCCEEEEEeCC
Q 008363          328 LHLVNCSSFAIWSVQVS-RLTGMVAYCSAD  356 (568)
Q Consensus       328 l~~~~~h~~~V~~l~~s-p~~~~l~s~s~D  356 (568)
                      +..+..+...+++++|+ +++..|+.++..
T Consensus       263 ~~~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          263 IARYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             EEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             EEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence            24566666679999998 887766555433

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.59  E-value=3.7e-06  Score=82.61  Aligned_cols=188  Identities=8%  Similarity=-0.054  Sum_probs=115.0

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCC-cCc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGG-TQS  180 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h-~~~  180 (568)
                      .+..++|.+++          +++++...++.|.+|+.. ++.. .+....                      .+. ...
T Consensus        87 ~~~gl~~d~dG----------~l~v~~~~~~~v~~~~~~-g~~~-~~~~~~----------------------~~~~~~~  132 (305)
T 3dr2_A           87 FTNGNAVDAQQ----------RLVHCEHGRRAITRSDAD-GQAH-LLVGRY----------------------AGKRLNS  132 (305)
T ss_dssp             CEEEEEECTTS----------CEEEEETTTTEEEEECTT-SCEE-EEECEE----------------------TTEECSC
T ss_pred             ccceeeECCCC----------CEEEEECCCCEEEEECCC-CCEE-EEEecc----------------------CCCccCC
Confidence            45599999998          666665566889999986 4422 221100                      111 122


Q ss_pred             cceEEEEccCCCCCEEEE----EeC-------------CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCC
Q 008363          181 IPLTMEWSTSPPHDYLLA----GCH-------------DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESD  243 (568)
Q Consensus       181 V~~~v~~s~~~~g~~l~s----gs~-------------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~  243 (568)
                      + ..+.+.  ++|.++++    |..             .+.|..||..++      ......  +......++|+|++  
T Consensus       133 ~-~~i~~d--~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g------~~~~~~--~~~~p~gl~~spdg--  199 (305)
T 3dr2_A          133 P-NDLIVA--RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS------PLQRMA--DLDHPNGLAFSPDE--  199 (305)
T ss_dssp             C-CCEEEC--TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC------CCEEEE--EESSEEEEEECTTS--
T ss_pred             C-CCEEEC--CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC------cEEEEe--cCCCCcceEEcCCC--
Confidence            3 678888  88988876    332             245666766544      222222  33457889999998  


Q ss_pred             CCCCcEEEEEcCC------C-EEEEECCCCCc-ceeee-CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCC
Q 008363          244 SDSANVILTAGHG------G-LKFWDIRDPFR-PLWDI-HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVP  314 (568)
Q Consensus       244 ~~~~~~las~s~d------~-v~lwD~~~~~~-~~~~~-~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~  314 (568)
                          ..|+.+...      . |.+||+..... ....+ ....+....++++++|+ |.+++.+ .|.+|+.        
T Consensus       200 ----~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~--------  265 (305)
T 3dr2_A          200 ----QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS--------  265 (305)
T ss_dssp             ----SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT--------
T ss_pred             ----CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC--------
Confidence                655555433      5 99999875420 00111 11233456789999999 4454444 4889987        


Q ss_pred             CCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 008363          315 ATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVH  360 (568)
Q Consensus       315 ~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~  360 (568)
                       .|+.        +..+..+. .+.+++|+++++.|..++.++..+
T Consensus       266 -~g~~--------~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          266 -DGQL--------LGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             -TSCE--------EEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred             -CCCE--------EEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence             2433        24555444 578999999988888888764433

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.54  E-value=5.5e-06  Score=91.37  Aligned_cols=200  Identities=12%  Similarity=0.102  Sum_probs=128.0

Q ss_pred             eEEEEccCCCCcccccCcccEEEEEeCCCc-------------EEEEECCCCceeeE-EeccCCccCCCCceEEEeecce
Q 008363          104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGS-------------LEVWEVPLLRTMKA-IYLSSMKEGTDPRFVKLEPVFR  169 (568)
Q Consensus       104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~-------------V~iwd~~~~~~~~~-l~~~~~~~~~~~~~v~~~~~~~  169 (568)
                      ..++|+ ++          +.|+.++.+..             |++|++.++..... ++..                  
T Consensus       178 ~~~~Ws-Dg----------~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~------------------  228 (693)
T 3iuj_A          178 SGISWL-GN----------EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA------------------  228 (693)
T ss_dssp             CCCEEE-TT----------TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESC------------------
T ss_pred             ccEEEe-CC----------CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEec------------------
Confidence            368899 98          67888877743             89999887543211 1000                  


Q ss_pred             ecccccC-CcCccceEEEEccCCCCCEEEEEeC----CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCC
Q 008363          170 CSMLKCG-GTQSIPLTMEWSTSPPHDYLLAGCH----DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDS  244 (568)
Q Consensus       170 ~~~~~~~-h~~~V~~~v~~s~~~~g~~l~sgs~----Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~  244 (568)
                           .. |...+ ..+.|+  ++|++|+....    +..|.+||+.++.     .....+..+....... |++++.  
T Consensus       229 -----~~~~~~~~-~~~~~S--pDg~~l~~~~~~~~~~~~i~~~d~~~~~-----~~~~~l~~~~~~~~~~-~~~~g~--  292 (693)
T 3iuj_A          229 -----IPAQHHRY-VGATVT--EDDRFLLISAANSTSGNRLYVKDLSQEN-----APLLTVQGDLDADVSL-VDNKGS--  292 (693)
T ss_dssp             -----SGGGCCSE-EEEEEC--TTSCEEEEEEESSSSCCEEEEEETTSTT-----CCCEEEECSSSSCEEE-EEEETT--
T ss_pred             -----CCCCCeEE-EEEEEc--CCCCEEEEEEccCCCCcEEEEEECCCCC-----CceEEEeCCCCceEEE-EeccCC--
Confidence                 22 33444 678888  88988755432    3589999987651     2344555666666665 555551  


Q ss_pred             CCCcEEEEEcCC---C-EEEEECCCCCc-ceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEEccccccCCCCC
Q 008363          245 DSANVILTAGHG---G-LKFWDIRDPFR-PLWDIHPAPKFIYGLDWLPDPGCVILSFD-DG--AMRIVSLLKAAYDVPAT  316 (568)
Q Consensus       245 ~~~~~las~s~d---~-v~lwD~~~~~~-~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg--~I~lwd~~~~~~~~~~~  316 (568)
                         .+++.+..+   . |..+|+.++.. ....+..|...+.  .|++++.+|+.... ++  .|++||+.         
T Consensus       293 ---~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~---------  358 (693)
T 3iuj_A          293 ---TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE---------  358 (693)
T ss_dssp             ---EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT---------
T ss_pred             ---EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC---------
Confidence               566666554   4 99999987632 1344556665554  89999999888765 44  68888873         


Q ss_pred             CCCccCccccceEEEe-cCCCCEEEEEEecCCCEEEEEeCC----CeEEEEEcCCCeee
Q 008363          317 GKPFAGTKQQGLHLVN-CSSFAIWSVQVSRLTGMVAYCSAD----GTVHRFQLTAKAVE  370 (568)
Q Consensus       317 g~~~~~~~~~~l~~~~-~h~~~V~~l~~sp~~~~l~s~s~D----g~v~iwd~~~~~~~  370 (568)
                      |..        ...+. ...+.+..+.+++++..|+....+    +.|+.||+.++...
T Consensus       359 g~~--------~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~  409 (693)
T 3iuj_A          359 GKR--------VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS  409 (693)
T ss_dssp             SCE--------EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred             CCe--------eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence            221        12332 234567778888888666555444    88999999876543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.53  E-value=1.1e-05  Score=82.18  Aligned_cols=193  Identities=13%  Similarity=0.187  Sum_probs=121.4

Q ss_pred             cEEEEEeCCCcEEEEECCCC----ceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEE
Q 008363          123 GYLAVLLGNGSLEVWEVPLL----RTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLA  198 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~----~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~s  198 (568)
                      .+++.+..+++|.|+|+.+.    +..+++.+..              +.    ...+...  |..+...  |+| ++++
T Consensus        97 ~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~--------------~~----~~~g~s~--Ph~~~~~--pdG-i~Vs  153 (462)
T 2ece_A           97 FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEE--------------VK----KVSGYSR--LHTVHCG--PDA-IYIS  153 (462)
T ss_dssp             EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHH--------------HH----HHHCEEE--EEEEEEC--SSC-EEEE
T ss_pred             EEEEccCCCCeEEEEECCCCCCCceeeeeechhh--------------cc----cccCCCc--ccceeEC--CCe-EEEE
Confidence            56777788999999999753    3333321000              00    0011111  2455655  788 7777


Q ss_pred             EeCC------CeEEEEEccCCCCCCCCceeEEeeCCC---CCeeEEEEccCCCCCCCCcEEEEEc---------------
Q 008363          199 GCHD------GTVALWKFVASDSSIDSRPLLCFSADT---LPIRAVSWAPAESDSDSANVILTAG---------------  254 (568)
Q Consensus       199 gs~D------g~I~iwd~~~~~~~~~~~~~~~~~~h~---~~V~~v~~~p~~~~~~~~~~las~s---------------  254 (568)
                      +..+      |.|.++|..+.      +.+..+....   ..-+.+.|+|++      +++++..               
T Consensus       154 ~~g~~~g~~~g~v~vlD~~T~------~v~~~~~~~~~~~~~~Yd~~~~p~~------~~mvsS~wg~p~~~~~g~~~~~  221 (462)
T 2ece_A          154 ALGNEEGEGPGGILMLDHYSF------EPLGKWEIDRGDQYLAYDFWWNLPN------EVLVSSEWAVPNTIEDGLKLEH  221 (462)
T ss_dssp             EEEETTSCSCCEEEEECTTTC------CEEEECCSBCTTCCCCCCEEEETTT------TEEEECBCCCHHHHTTCCCTTT
T ss_pred             cCCCcCCCCCCeEEEEECCCC------eEEEEEccCCCCccccceEEECCCC------CEEEEccCcCccccccccchhh
Confidence            6655      78999999876      6777764221   224568889998      7888875               


Q ss_pred             ----CCC-EEEEECCCCCcceeeeCCC-C-CCeEEEEE--cCCCCEEEEEe------CCCcEEEEEccccccCCCCCCCC
Q 008363          255 ----HGG-LKFWDIRDPFRPLWDIHPA-P-KFIYGLDW--LPDPGCVILSF------DDGAMRIVSLLKAAYDVPATGKP  319 (568)
Q Consensus       255 ----~d~-v~lwD~~~~~~~~~~~~~h-~-~~i~~l~~--sp~~~~l~s~~------~dg~I~lwd~~~~~~~~~~~g~~  319 (568)
                          .+. |.+||+.+. +.+.++..- . .....|.|  +|+++++++++      .+++|.+|....        |..
T Consensus       222 ~~~~~~d~V~v~D~~~~-k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~--------g~~  292 (462)
T 2ece_A          222 LKDRYGNRIHFWDLRKR-KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED--------GKW  292 (462)
T ss_dssp             HHHHSCCEEEEEETTTT-EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET--------TEE
T ss_pred             hhhccCCEEEEEECCCC-cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC--------Cce
Confidence                234 999999976 555555431 1 22345555  99999998876      567888776632        211


Q ss_pred             ccCccccceEEE--ec----------------CCCCEEEEEEecCCCEEEEEeC-CCeEEEEEcC
Q 008363          320 FAGTKQQGLHLV--NC----------------SSFAIWSVQVSRLTGMVAYCSA-DGTVHRFQLT  365 (568)
Q Consensus       320 ~~~~~~~~l~~~--~~----------------h~~~V~~l~~sp~~~~l~s~s~-Dg~v~iwd~~  365 (568)
                            ..+..+  ..                -......|.++++|++|.++.. .+.|.+||+.
T Consensus       293 ------~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          293 ------NAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             ------EEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             ------eEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence                  111111  00                0234678999999998877764 6899999985

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.53  E-value=2.1e-05  Score=80.09  Aligned_cols=207  Identities=15%  Similarity=0.157  Sum_probs=129.6

Q ss_pred             CCCcceEEEeec-------cCCceeeEEEEccCCCCcccccCcccEEEEEeCC------CcEEEEECCCCceeeEEeccC
Q 008363           86 DIALPRVVLCLA-------HNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGN------GSLEVWEVPLLRTMKAIYLSS  152 (568)
Q Consensus        86 ~~~~p~~~~~~~-------h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~d------g~V~iwd~~~~~~~~~l~~~~  152 (568)
                      +...|++...+.       +....-+.+...|++           +++++..+      |.|.++|..+++.+..+..  
T Consensus       116 ~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-----------i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~--  182 (462)
T 2ece_A          116 NPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-----------IYISALGNEEGEGPGGILMLDHYSFEPLGKWEI--  182 (462)
T ss_dssp             CTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-----------EEEEEEEETTSCSCCEEEEECTTTCCEEEECCS--
T ss_pred             CCCCceeeeeechhhcccccCCCcccceeECCCe-----------EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEcc--
Confidence            345567776552       122234467888887           56666666      7899999999888766521  


Q ss_pred             CccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEe-------------------CCCeEEEEEccCC
Q 008363          153 MKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC-------------------HDGTVALWKFVAS  213 (568)
Q Consensus       153 ~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs-------------------~Dg~I~iwd~~~~  213 (568)
                                            .+....+++.+-|+  |+++.+++..                   .+.+|.+||+.+.
T Consensus       183 ----------------------~~~~~~~~Yd~~~~--p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~  238 (462)
T 2ece_A          183 ----------------------DRGDQYLAYDFWWN--LPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR  238 (462)
T ss_dssp             ----------------------BCTTCCCCCCEEEE--TTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred             ----------------------CCCCccccceEEEC--CCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence                                  11222234678888  8888888874                   4689999999866


Q ss_pred             CCCCCCceeEEeeCC--CCCeeEEEE--ccCCCCCCCCcEEEEEc------CCC-EEEEECCCCC-cceee--eCC----
Q 008363          214 DSSIDSRPLLCFSAD--TLPIRAVSW--APAESDSDSANVILTAG------HGG-LKFWDIRDPF-RPLWD--IHP----  275 (568)
Q Consensus       214 ~~~~~~~~~~~~~~h--~~~V~~v~~--~p~~~~~~~~~~las~s------~d~-v~lwD~~~~~-~~~~~--~~~----  275 (568)
                            +.+.++..-  ......|.|  +|++      .++..+.      .++ |.+|....+. .....  +..    
T Consensus       239 ------k~~~tI~vg~~g~~P~~i~f~~~Pdg------~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~  306 (462)
T 2ece_A          239 ------KRIHSLTLGEENRMALELRPLHDPTK------LMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLE  306 (462)
T ss_dssp             ------EEEEEEESCTTEEEEEEEEECSSTTC------CEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECC
T ss_pred             ------cEeeEEecCCCCCccceeEeeECCCC------CEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccc
Confidence                  666666542  123456666  9998      5555554      444 7665544321 01111  111    


Q ss_pred             ------------CCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccceEEEecC--------
Q 008363          276 ------------APKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS--------  334 (568)
Q Consensus       276 ------------h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h--------  334 (568)
                                  -......|.++|||++|+++.. .+.|.+||+...       +++      +.+..+...        
T Consensus       307 ~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~-------~~~------~lv~~I~tGG~~~~~~~  373 (462)
T 2ece_A          307 GNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP-------FKP------VLTGKVKLGGIFHRADH  373 (462)
T ss_dssp             SSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST-------TSC------EEEEEEECBTTTTCBCC
T ss_pred             ccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC-------CCc------EEEEEEEeCCeeccccc
Confidence                        0234678999999999999876 789999999531       111      112222211        


Q ss_pred             ---C---CCEEEEEEecCCCEEEEEe
Q 008363          335 ---S---FAIWSVQVSRLTGMVAYCS  354 (568)
Q Consensus       335 ---~---~~V~~l~~sp~~~~l~s~s  354 (568)
                         .   +.-..++++|+|++|+++.
T Consensus       374 ~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          374 PAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             cccccCCCCCCEEEEcCCCCEEEEEc
Confidence               0   1247899999999888887

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.53  E-value=1.1e-05  Score=82.80  Aligned_cols=223  Identities=12%  Similarity=0.037  Sum_probs=126.7

Q ss_pred             EEEEccCCCCcccccCcccEEEEEe----------CCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLL----------GNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s----------~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      .++++|++          ++|+++.          .++.|.++|..+++.+..+.-..             + ..     
T Consensus       122 gia~SpDg----------k~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g-------------~-~r-----  172 (426)
T 3c75_H          122 HPVAAEDG----------SFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPD-------------A-PR-----  172 (426)
T ss_dssp             EEEECTTS----------SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT-------------C-CC-----
T ss_pred             ceEECCCC----------CEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCC-------------c-cc-----
Confidence            68999999          6666665          46789999999988877652110             0 00     


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeC--CCeEEEEEccCCCCCCCCceeEEeeCCCC-------CeeEEEEccCCC---
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCH--DGTVALWKFVASDSSIDSRPLLCFSADTL-------PIRAVSWAPAES---  242 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~-------~V~~v~~~p~~~---  242 (568)
                      ...... |..+.++  |+|++|+++..  +++|.+.|+.+.      +.+..+..-..       .-.-+++++++.   
T Consensus       173 ~~~g~~-P~~~~~s--pDGk~lyV~n~~~~~~VsVID~~t~------kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~  243 (426)
T 3c75_H          173 FLVGTY-QWMNALT--PDNKNLLFYQFSPAPAVGVVDLEGK------TFDRMLDVPDCYHIFPASPTVFYMNCRDGSLAR  243 (426)
T ss_dssp             CCBSCC-GGGSEEC--TTSSEEEEEECSSSCEEEEEETTTT------EEEEEEECCSEEEEEEEETTEEEEEETTSSEEE
T ss_pred             cccCCC-cceEEEc--CCCCEEEEEecCCCCeEEEEECCCC------eEEEEEEcCCceeeccCCCcEEEEEcCCCCEEE
Confidence            000011 3667877  99999998874  579999999876      44444432100       001122333330   


Q ss_pred             -------C---------------------CCCCcEEEEEcCCC-EEEEECCCCCcce---eeeC-C-------CCCCeEE
Q 008363          243 -------D---------------------SDSANVILTAGHGG-LKFWDIRDPFRPL---WDIH-P-------APKFIYG  282 (568)
Q Consensus       243 -------~---------------------~~~~~~las~s~d~-v~lwD~~~~~~~~---~~~~-~-------h~~~i~~  282 (568)
                             .                     ...+..++..+..+ |.+.|+......+   ..+. .       .......
T Consensus       244 V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~  323 (426)
T 3c75_H          244 VDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQ  323 (426)
T ss_dssp             EECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSC
T ss_pred             EECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCcee
Confidence                   0                     00001222222333 5555554321100   0000 0       0111123


Q ss_pred             EEEcCCCCEEEEEeC----------CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCC-EEE
Q 008363          283 LDWLPDPGCVILSFD----------DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG-MVA  351 (568)
Q Consensus       283 l~~sp~~~~l~s~~~----------dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~-~l~  351 (568)
                      ++++|++..|++...          .+.|.++|+.+        ++.+        ..+... ...+++.|+|+++ +|+
T Consensus       324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T--------~kvv--------~~I~vg-~~P~gia~spDg~~~ly  386 (426)
T 3c75_H          324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET--------GERI--------NKIELG-HEIDSINVSQDAEPLLY  386 (426)
T ss_dssp             EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT--------CCEE--------EEEEEE-EEECEEEECCSSSCEEE
T ss_pred             eEEcCCCCEEEEEecccccccccCCCCEEEEEECCC--------CeEE--------EEEECC-CCcCeEEEccCCCEEEE
Confidence            688888887777642          35799999843        4332        344322 2468999999998 888


Q ss_pred             EEe-CCCeEEEEEcCCCeeeccC-CCCCcceee
Q 008363          352 YCS-ADGTVHRFQLTAKAVEKDH-SRNRPMHFL  382 (568)
Q Consensus       352 s~s-~Dg~v~iwd~~~~~~~~~~-~~~~~~~~~  382 (568)
                      ++. .++.|.++|+.+.++.+.. .....|+.+
T Consensus       387 v~n~~s~~VsVID~~t~kvv~tI~~vG~~P~~i  419 (426)
T 3c75_H          387 ALSAGTQTLHIYDAATGEELRSVDQLGRGPQII  419 (426)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEECCCSSSCCEE
T ss_pred             EEcCCCCeEEEEECCCCCEEEEecCCCCCCcEE
Confidence            887 5999999999999887663 333444433

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.51  E-value=0.0002  Score=68.49  Aligned_cols=202  Identities=8%  Similarity=-0.032  Sum_probs=119.5

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      ...++|+|++.         .++++-..++.|.+++.........+                          ...... |
T Consensus        38 ~~gi~~d~~~~---------~ly~~d~~~~~I~~~~~~g~~~~~~~--------------------------~~~~~~-p   81 (267)
T 1npe_A           38 IIGLAFDCVDK---------VVYWTDISEPSIGRASLHGGEPTTII--------------------------RQDLGS-P   81 (267)
T ss_dssp             EEEEEEETTTT---------EEEEEETTTTEEEEEESSSCCCEEEE--------------------------CTTCCC-E
T ss_pred             EEEEEEecCCC---------EEEEEECCCCEEEEEecCCCCcEEEE--------------------------ECCCCC-c
Confidence            34899999762         45555556789999998764322111                          111112 3


Q ss_pred             eEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC--CC-E
Q 008363          183 LTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH--GG-L  258 (568)
Q Consensus       183 ~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~--d~-v  258 (568)
                      ..+++.  +++. ++++-...+.|.++++...      ...............++++|++     ..++++...  .+ |
T Consensus        82 ~~ia~d--~~~~~lyv~d~~~~~I~~~~~~g~------~~~~~~~~~~~~P~~i~vd~~~-----g~lyv~~~~~~~~~I  148 (267)
T 1npe_A           82 EGIALD--HLGRTIFWTDSQLDRIEVAKMDGT------QRRVLFDTGLVNPRGIVTDPVR-----GNLYWTDWNRDNPKI  148 (267)
T ss_dssp             EEEEEE--TTTTEEEEEETTTTEEEEEETTSC------SCEEEECSSCSSEEEEEEETTT-----TEEEEEECCSSSCEE
T ss_pred             cEEEEE--ecCCeEEEEECCCCEEEEEEcCCC------CEEEEEECCCCCccEEEEeeCC-----CEEEEEECCCCCcEE
Confidence            778877  6544 4555556789999998743      1111222222457899999964     155555543  34 8


Q ss_pred             EEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCC
Q 008363          259 KFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFA  337 (568)
Q Consensus       259 ~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~  337 (568)
                      ..+++....... .....-.....++++|++..|+.+. ..+.|.++|+..         ...       ...+.+ ...
T Consensus       149 ~~~~~dg~~~~~-~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g---------~~~-------~~~~~~-~~~  210 (267)
T 1npe_A          149 ETSHMDGTNRRI-LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ---------PGR-------RKVLEG-LQY  210 (267)
T ss_dssp             EEEETTSCCCEE-EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE---------EEE-------EEEEEC-CCS
T ss_pred             EEEecCCCCcEE-EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC---------Cce-------EEEecC-CCC
Confidence            888886542221 1212234568999999887777665 478999999842         110       112222 223


Q ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          338 IWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       338 V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                      ...+++. .+.++++....+.|.++|..+++....
T Consensus       211 P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~  244 (267)
T 1npe_A          211 PFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDT  244 (267)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEE
Confidence            4566654 344444444568999999988776554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.49  E-value=4.5e-05  Score=72.74  Aligned_cols=205  Identities=5%  Similarity=-0.063  Sum_probs=128.9

Q ss_pred             eEEEeeccCCc-eeeEEEEccCCCCcccccCcccEEEEEeC--CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeec
Q 008363           91 RVVLCLAHNGK-VAWDVKWKPYNAVDCKCKQRLGYLAVLLG--NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPV  167 (568)
Q Consensus        91 ~~~~~~~h~~~-~v~~v~~sp~~~~~~~~~~~~~~las~s~--dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~  167 (568)
                      .++..+.|... ....+.|+|++          .++++.+.  ++.|+++|+.+++.+..+...                
T Consensus        10 ~vv~~~p~~~~~f~~Gl~~~~dg----------~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~----------------   63 (266)
T 2iwa_A           10 EVLNEFPHDPYAFTQGLVYAEND----------TLFESTGLYGRSSVRQVALQTGKVENIHKMD----------------   63 (266)
T ss_dssp             EEEEEEECCTTCCEEEEEECSTT----------EEEEEECSTTTCEEEEEETTTCCEEEEEECC----------------
T ss_pred             eEEEEEECCCCCCcccEEEeCCC----------eEEEECCCCCCCEEEEEECCCCCEEEEEecC----------------
Confidence            34555667653 34589999987          45554443  689999999999888775211                


Q ss_pred             ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363          168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA  247 (568)
Q Consensus       168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~  247 (568)
                              .+..  +..+++.   .+.+.++.-.++.|.++|..+.      +.+..+......  .+.+++++.     
T Consensus        64 --------~~~f--geGi~~~---g~~lyv~t~~~~~v~viD~~t~------~v~~~i~~g~~~--g~glt~Dg~-----  117 (266)
T 2iwa_A           64 --------DSYF--GEGLTLL---NEKLYQVVWLKNIGFIYDRRTL------SNIKNFTHQMKD--GWGLATDGK-----  117 (266)
T ss_dssp             --------TTCC--EEEEEEE---TTEEEEEETTCSEEEEEETTTT------EEEEEEECCSSS--CCEEEECSS-----
T ss_pred             --------CCcc--eEEEEEe---CCEEEEEEecCCEEEEEECCCC------cEEEEEECCCCC--eEEEEECCC-----
Confidence                    1111  1345544   2345566667899999999866      677777432111  233455662     


Q ss_pred             cEEEEEcCCC-EEEEECCCCCcceeeeCC--CC---CCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCcc
Q 008363          248 NVILTAGHGG-LKFWDIRDPFRPLWDIHP--AP---KFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFA  321 (568)
Q Consensus       248 ~~las~s~d~-v~lwD~~~~~~~~~~~~~--h~---~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~  321 (568)
                      .++++- .++ |.++|..+. +.+..+.-  +.   ..++.+.|. +++..+....++.|.+.|..        +|+.+ 
T Consensus       118 ~l~vs~-gs~~l~viD~~t~-~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~--------tg~V~-  185 (266)
T 2iwa_A          118 ILYGSD-GTSILYEIDPHTF-KLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAK--------DGTLL-  185 (266)
T ss_dssp             SEEEEC-SSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETT--------TCCEE-
T ss_pred             EEEEEC-CCCeEEEEECCCC-cEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECC--------CCcEE-
Confidence            455554 455 999999876 44433331  11   236788888 67544444457899999994        46543 


Q ss_pred             CccccceEEEecC-------------CCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCC
Q 008363          322 GTKQQGLHLVNCS-------------SFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       322 ~~~~~~l~~~~~h-------------~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~  366 (568)
                             ..+...             ....+.|+|+|++ .+++++...+.|.+.++..
T Consensus       186 -------~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          186 -------GWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             -------EEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             -------EEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence                   333311             1356899999997 4666677888999888854

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.44  E-value=6.4e-06  Score=82.96  Aligned_cols=83  Identities=6%  Similarity=-0.033  Sum_probs=58.0

Q ss_pred             EEEcCCCCEEEEEeC---------CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCC-EEEE
Q 008363          283 LDWLPDPGCVILSFD---------DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG-MVAY  352 (568)
Q Consensus       283 l~~sp~~~~l~s~~~---------dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~-~l~s  352 (568)
                      ++|+|+++.++.+..         ++.+.++|+.+        ++.+        ..+.... ..++|+|+|+++ ++++
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t--------~~vv--------~~i~vg~-~p~gi~~s~Dg~~l~va  331 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV--------GQTS--------GPISNGH-DSDAIIAAQDGASDNYA  331 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS--------CCEE--------ECCEEEE-EECEEEECCSSSCEEEE
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCC--------CeEE--------EEEECCC-CcceEEECCCCCEEEEE
Confidence            689999998887643         23566999954        4332        2333222 478999999996 5677


Q ss_pred             Ee-CCCeEEEEEcCCCeeeccCCCCCcceee
Q 008363          353 CS-ADGTVHRFQLTAKAVEKDHSRNRPMHFL  382 (568)
Q Consensus       353 ~s-~Dg~v~iwd~~~~~~~~~~~~~~~~~~~  382 (568)
                      .. .++.|.++|+.+.++.+.....+.|+-+
T Consensus       332 ~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i  362 (368)
T 1mda_H          332 NSAGTEVLDIYDAASDQDQSSVELDKGPESL  362 (368)
T ss_dssp             EETTTTEEEEEESSSCEEEEECCCCSCCCEE
T ss_pred             ccCCCCeEEEEECCCCcEEEEEECCCCCCEE
Confidence            77 5999999999999888765544444433

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.44  E-value=2.6e-05  Score=78.57  Aligned_cols=199  Identities=13%  Similarity=0.102  Sum_probs=124.5

Q ss_pred             eEEEEccCCCCcccccCcccEEEEEeC--CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          104 WDVKWKPYNAVDCKCKQRLGYLAVLLG--NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       104 ~~v~~sp~~~~~~~~~~~~~~las~s~--dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      +.++|+|+|          ++|+++..  ++.|.|+|+.+++.+.++...                              
T Consensus       140 ~~~a~spDG----------k~lyVan~~~~~~VsVID~~t~~vv~tI~v~------------------------------  179 (386)
T 3sjl_D          140 WMTSLTPDG----------KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP------------------------------  179 (386)
T ss_dssp             GGEEECTTS----------SEEEEEECSSSCEEEEEETTTTEEEEEEECC------------------------------
T ss_pred             ceEEEcCCC----------CEEEEEEcCCCCeEEEEECCCCcEEEEEECC------------------------------
Confidence            368999999          77877764  689999999998888775211                              


Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccC-CCCCCCCceeEEeeCC----CCCee-EEEEc-cCCCCCCCCcEEEEEc
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVA-SDSSIDSRPLLCFSAD----TLPIR-AVSWA-PAESDSDSANVILTAG  254 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~-~~~~~~~~~~~~~~~h----~~~V~-~v~~~-p~~~~~~~~~~las~s  254 (568)
                       -|....|. ..+.+++.+.||++.+.++.. +.      .......+    ..++. ...|. +++      .++. .+
T Consensus       180 -g~~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~------v~~~~~~~~~~~~~~~~~~~~~~~~dG------~~~~-vs  244 (386)
T 3sjl_D          180 -DCYHIFPT-APDTFFMHCRDGSLAKVAFGTEGT------PEITHTEVFHPEDEFLINHPAYSQKAG------RLVW-PT  244 (386)
T ss_dssp             -SEEEEEEE-ETTEEEEEETTSCEEEEECCSSSC------CEEEECCCCSCTTSCBCSCCEEETTTT------EEEE-EB
T ss_pred             -CcceeecC-CCceeEEECCCCCEEEEECCCCCe------EEEeecceeccccccccccceeEcCCC------cEEE-Ee
Confidence             11111121 235677888888888888865 32      11111111    12222 24564 555      4444 45


Q ss_pred             CCC-EEEEECCCCCc-ceeeeC---------C-CCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEEccccccC
Q 008363          255 HGG-LKFWDIRDPFR-PLWDIH---------P-APKFIYGLDWLPDPGCVILSFD----------DGAMRIVSLLKAAYD  312 (568)
Q Consensus       255 ~d~-v~lwD~~~~~~-~~~~~~---------~-h~~~i~~l~~sp~~~~l~s~~~----------dg~I~lwd~~~~~~~  312 (568)
                      .++ |.+.|+.+... .+..+.         + ..+....++++|++..|+....          .+.|.++|+.     
T Consensus       245 ~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~-----  319 (386)
T 3sjl_D          245 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK-----  319 (386)
T ss_dssp             TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT-----
T ss_pred             CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECC-----
Confidence            567 99999976531 111111         0 1223345778999998888743          2568899994     


Q ss_pred             CCCCCCCccCccccceEEEecCCCCEEEEEEecCCC-EEEEE-eCCCeEEEEEcCCCeeeccCC
Q 008363          313 VPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG-MVAYC-SADGTVHRFQLTAKAVEKDHS  374 (568)
Q Consensus       313 ~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~-~l~s~-s~Dg~v~iwd~~~~~~~~~~~  374 (568)
                         +++.+        ..+.. ...+++|+|+++++ +|+++ ..++.|.++|..+++..+...
T Consensus       320 ---t~kv~--------~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~  371 (386)
T 3sjl_D          320 ---TGERL--------AKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  371 (386)
T ss_dssp             ---TCCEE--------EEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             ---CCeEE--------EEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEec
Confidence               34443        33332 23678999999986 66664 458999999999988776543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.43  E-value=0.00026  Score=71.57  Aligned_cols=125  Identities=10%  Similarity=0.023  Sum_probs=78.6

Q ss_pred             cEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEe----------CC
Q 008363          133 SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC----------HD  202 (568)
Q Consensus       133 ~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs----------~D  202 (568)
                      +|.+||..+++.+..+.                         .+   ..+ .++++  |+|++|+++.          .+
T Consensus        48 ~v~v~D~~t~~~~~~i~-------------------------~g---~~p-~i~~s--pDg~~lyv~n~~~~~~~rg~~~   96 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVN-------------------------GG---FLP-NPVAA--HSGSEFALASTSFSRIAKGKRT   96 (373)
T ss_pred             EEEEEECCCCeEEEEec-------------------------CC---CCC-CeEEC--CCCCEEEEEeccccccccCCCC
Confidence            88999999987765541                         11   123 67777  8999988886          36


Q ss_pred             CeEEEEEccCCCCCCCCceeEEeeCC-------CCCeeEEEEccCCCCCCCCcEEEEEcC--CC-EEEEECCCCCcceee
Q 008363          203 GTVALWKFVASDSSIDSRPLLCFSAD-------TLPIRAVSWAPAESDSDSANVILTAGH--GG-LKFWDIRDPFRPLWD  272 (568)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~~~h-------~~~V~~v~~~p~~~~~~~~~~las~s~--d~-v~lwD~~~~~~~~~~  272 (568)
                      +.|.+||..+.      +.+..+...       ......++|+|++      ++|+.++.  +. |.++| .+. +.+..
T Consensus        97 ~~v~viD~~t~------~~~~~i~~~~~~~~~~g~~p~~~~~spDG------~~l~v~n~~~~~~v~viD-~t~-~~~~~  162 (373)
T 2mad_H           97 DYVEVFDPVTF------LPIADIELPDAPRFDVGPYSWMNANTPNN------ADLLFFQFAAGPAVGLVV-QGG-SSDDQ  162 (373)
T ss_pred             CeEEEEECCCC------cEEEEEECCCccccccCCCccceEECCCC------CEEEEEecCCCCeEEEEE-CCC-CEEeE
Confidence            78999999865      444444221       1235689999999      77777653  35 99999 776 55555


Q ss_pred             -eCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEc
Q 008363          273 -IHPAPKFIYGLDWLPDPG-CVILSFDDGAMRIVSL  306 (568)
Q Consensus       273 -~~~h~~~i~~l~~sp~~~-~l~s~~~dg~I~lwd~  306 (568)
                       +.. ..   ++.+.|++. .+++.+.||.+.++|.
T Consensus       163 ~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~  194 (373)
T 2mad_H          163 LLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH  194 (373)
T ss_pred             EcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC
Confidence             421 21   233444442 3333445666666655

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.41  E-value=2e-05  Score=78.82  Aligned_cols=199  Identities=8%  Similarity=-0.012  Sum_probs=121.8

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeC-----CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLG-----NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG  176 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~-----dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~  176 (568)
                      .+..|++.+++          .++++-..     ++.|.+||+.+++.+..+..+..                    ...
T Consensus        68 ~p~gv~~d~~g----------~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~--------------------~~~  117 (343)
T 2qe8_A           68 TVLGIKSDGNG----------IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPP--------------------ITL  117 (343)
T ss_dssp             CEEEEEECSSS----------EEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTT--------------------TSC
T ss_pred             EeeEEEEcCCC----------cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChh--------------------hcc
Confidence            45599999998          55555443     57899999998876665522110                    011


Q ss_pred             CcCccceEEEEccCCCCCE-EEEEe---CCCeEEEEEccCCCCCCCCceeEEeeCC------------------------
Q 008363          177 GTQSIPLTMEWSTSPPHDY-LLAGC---HDGTVALWKFVASDSSIDSRPLLCFSAD------------------------  228 (568)
Q Consensus       177 h~~~V~~~v~~s~~~~g~~-l~sgs---~Dg~I~iwd~~~~~~~~~~~~~~~~~~h------------------------  228 (568)
                      +...+ ..+++.  +++.. +++..   .++.|.+||+.++      +..+.+.+|                        
T Consensus       118 ~~~~~-~~v~vd--~~~g~~yvtd~~~~~~~~i~v~d~~~g------~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g  188 (343)
T 2qe8_A          118 SNSFV-NDLAVD--LIHNFVYISDPAPDDKAALIRVDLQTG------LAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDG  188 (343)
T ss_dssp             TTCCC-CEEEEE--TTTTEEEEEECCSGGGCEEEEEETTTC------CEEEECTTCTTTSCCSCCCEETTEECBEECTTS
T ss_pred             ccccc-ceEEEe--cCCCEEEEEcCccCCCCeEEEEECCCC------CEEEEecCCCcccccccceeECCEEEEeccCCC
Confidence            22233 677777  54444 45554   5789999998755      222222221                        


Q ss_pred             -----CCCeeEEEEccCCCCCCCCcEEEEEcCCC--EEEEECC---CCC----cce--eeeCCCCCCeEEEEEcCCCCEE
Q 008363          229 -----TLPIRAVSWAPAESDSDSANVILTAGHGG--LKFWDIR---DPF----RPL--WDIHPAPKFIYGLDWLPDPGCV  292 (568)
Q Consensus       229 -----~~~V~~v~~~p~~~~~~~~~~las~s~d~--v~lwD~~---~~~----~~~--~~~~~h~~~i~~l~~sp~~~~l  292 (568)
                           ...+..|+|+|++      +.|+.+...+  |..++..   ...    ...  ....++......++++++|..+
T Consensus       189 ~~~~~~~~~~gia~s~dg------~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~  262 (343)
T 2qe8_A          189 TVIRPHLGVNGIVLDAEN------EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIY  262 (343)
T ss_dssp             CEECCCCCEEEEEECTTS------CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEE
T ss_pred             ceeceecccceeEeccCC------CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEE
Confidence                 1236889999998      6777665554  5555532   110    000  0111233445679999999988


Q ss_pred             EEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe--cCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 008363          293 ILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN--CSSFAIWSVQVSRLTGMVAYCSADGTVHRF  362 (568)
Q Consensus       293 ~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~--~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iw  362 (568)
                      ++...++.|.+||..        +|+.         ..+.  .+-..+.+++|.+++.++++.+..+.+.+|
T Consensus       263 va~~~~~~V~~~d~~--------~G~~---------~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          263 VGDLAHSAIGVITSA--------DRAY---------KLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             EEEGGGTEEEEEETT--------TTEE---------EEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred             EEccCCCeEEEEECC--------CCCE---------EEEEECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence            888889999999982        2322         1222  124568899999988888777755444333

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.38  E-value=2.8e-05  Score=78.36  Aligned_cols=230  Identities=12%  Similarity=0.055  Sum_probs=134.2

Q ss_pred             EEEEccCCCCcccccCcccEEEEEe----------CCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLL----------GNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s----------~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      .++++|++          ++|+++.          .++.|.+||..+++.+..+.-...                    .
T Consensus        82 ~va~spDG----------~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g--------------------~  131 (386)
T 3sjl_D           82 NPVVADDG----------SFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA--------------------P  131 (386)
T ss_dssp             EEEECTTS----------SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC--------------------C
T ss_pred             cEEECCCC----------CEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCc--------------------c
Confidence            49999999          6666654          367899999999888776522100                    0


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeC--CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCH--DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILT  252 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las  252 (568)
                      ....+.-|..++++  |+|++|+++..  ++.|.++|+.+.      +.+.++..-  ..  ..+.|.+     ...|++
T Consensus       132 r~~~g~~P~~~a~s--pDGk~lyVan~~~~~~VsVID~~t~------~vv~tI~v~--g~--~~~~P~g-----~~~~~~  194 (386)
T 3sjl_D          132 RFLVGTYPWMTSLT--PDGKTLLFYQFSPAPAVGVVDLEGK------AFKRMLDVP--DC--YHIFPTA-----PDTFFM  194 (386)
T ss_dssp             CCCBSCCGGGEEEC--TTSSEEEEEECSSSCEEEEEETTTT------EEEEEEECC--SE--EEEEEEE-----TTEEEE
T ss_pred             ccccCCCCceEEEc--CCCCEEEEEEcCCCCeEEEEECCCC------cEEEEEECC--Cc--ceeecCC-----CceeEE
Confidence            00001114778888  99999888874  689999999977      677766431  11  2223443     156667


Q ss_pred             EcCCC-EEEEECCCCCcceeee----CCCCCCeE-EEEEc-CCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccc
Q 008363          253 AGHGG-LKFWDIRDPFRPLWDI----HPAPKFIY-GLDWL-PDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQ  325 (568)
Q Consensus       253 ~s~d~-v~lwD~~~~~~~~~~~----~~h~~~i~-~l~~s-p~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~  325 (568)
                      .+.|+ +.+.++....+.....    ..-..++. ...|. ++|++++ .+.+|.|++.|+....      -+..     
T Consensus       195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~------~~v~-----  262 (386)
T 3sjl_D          195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGD------AKFL-----  262 (386)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSS------CEEC-----
T ss_pred             ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCc------ceee-----
Confidence            77777 8888887632322211    11122232 24664 6776555 5668999999984311      0011     


Q ss_pred             cceEEEe-------cCCCCEEEEEEecCCCEEEEEeC----------CCeEEEEEcCCCeeeccCCCCCcceeeeecccC
Q 008363          326 QGLHLVN-------CSSFAIWSVQVSRLTGMVAYCSA----------DGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTE  388 (568)
Q Consensus       326 ~~l~~~~-------~h~~~V~~l~~sp~~~~l~s~s~----------Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~  388 (568)
                      ..+..+.       ........++++++++.|+....          ...|.+.|+.+.++.+.......++  -..+++
T Consensus       263 ~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~--~lavs~  340 (386)
T 3sjl_D          263 PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEID--SINVSQ  340 (386)
T ss_dssp             CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEEC--EEEECS
T ss_pred             cceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcc--eEEECC
Confidence            1111000       01122234677999877777643          2579999999988776533222222  225777


Q ss_pred             CCC-ceEE
Q 008363          389 DES-AITV  395 (568)
Q Consensus       389 ~~~-~i~~  395 (568)
                      |+. .+.+
T Consensus       341 D~~~~ly~  348 (386)
T 3sjl_D          341 DEKPLLYA  348 (386)
T ss_dssp             SSSCEEEE
T ss_pred             CCCeEEEE
Confidence            876 3444

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.30  E-value=9.2e-08  Score=97.12  Aligned_cols=142  Identities=13%  Similarity=0.147  Sum_probs=77.5

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcce
Q 008363          192 PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPL  270 (568)
Q Consensus       192 ~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~  270 (568)
                      ++..+++++.||.|..||..++      +.+..+..  +.+.+..+..++      .++++++.|+ |+.||..++ ..+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG------~~~W~~~~--~~~~s~p~~~~g------~~~v~~s~dg~l~a~d~~tG-~~~   72 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTG------SIKWTLKE--DPVLQVPTHVEE------PAFLPDPNDGSLYTLGSKNN-EGL   72 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTC------CEEEEEEC--CCSCCCC-----------CCEEECTTTCCEEEC------CCS
T ss_pred             eCCEEEEEcCCCEEEEEECCCC------CEEEEecC--CCceecceEcCC------CEEEEeCCCCEEEEEECCCC-cee
Confidence            4679999999999999999877      66666655  455555555665      6788878888 999999877 444


Q ss_pred             eeeCCCCC-CeE-EEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCC
Q 008363          271 WDIHPAPK-FIY-GLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG  348 (568)
Q Consensus       271 ~~~~~h~~-~i~-~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~  348 (568)
                      +.+..+.. .+. +..+. ++..|++++.|+.|+.||..        +|+.++        .+..+.    ...++|++.
T Consensus        73 w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~--------tG~~~w--------~~~~~~----~~~~~p~~~  131 (369)
T 2hz6_A           73 TKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLL--------TGEKQQ--------TLSSAF----ADSLSPSTS  131 (369)
T ss_dssp             EECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-----------------------------------------
T ss_pred             eeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECC--------CCcEEE--------EecCCC----cccccccCC
Confidence            44432211 010 01111 34567788889999999994        476542        333332    234567888


Q ss_pred             EEEEEeCCCeEEEEEcCCCee
Q 008363          349 MVAYCSADGTVHRFQLTAKAV  369 (568)
Q Consensus       349 ~l~s~s~Dg~v~iwd~~~~~~  369 (568)
                      .|++++.|+.|+.||..+++.
T Consensus       132 ~v~~~~~dg~v~a~d~~tG~~  152 (369)
T 2hz6_A          132 LLYLGRTEYTITMYDTKTREL  152 (369)
T ss_dssp             -EEEEEEEEEEECCCSSSSSC
T ss_pred             EEEEEecCCEEEEEECCCCCE
Confidence            999999999999999988764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.29  E-value=8.2e-05  Score=78.36  Aligned_cols=231  Identities=6%  Similarity=-0.009  Sum_probs=138.4

Q ss_pred             cEEEEEe-CCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEe-
Q 008363          123 GYLAVLL-GNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC-  200 (568)
Q Consensus       123 ~~las~s-~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs-  200 (568)
                      ++|.+.. .++.|.+.|+.+.++...+.-+                       .+  .. +..+++...|++.++++++ 
T Consensus       102 ~~lfVnd~~~~rVavIdl~t~~~~~ii~ip-----------------------~g--~~-phg~~~~~~p~~~~v~~~~~  155 (595)
T 1fwx_A          102 RFLFMNDKANTRVARVRCDVMKCDAILEIP-----------------------NA--KG-IHGLRPQKWPRSNYVFCNGE  155 (595)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECS-----------------------SC--CS-EEEEEECCSSBCSEEEEEEC
T ss_pred             CEEEEEcCCCCEEEEEECCCceEeeEEeCC-----------------------CC--CC-CcceeeeecCCCcEEEEecc
Confidence            4555544 4667999999999888754211                       11  11 2556643226778887774 


Q ss_pred             -----------------CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-------
Q 008363          201 -----------------HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-------  256 (568)
Q Consensus       201 -----------------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-------  256 (568)
                                       .++.|.++|..+.      +.+..+..-. ....++++|++      .++++++.+       
T Consensus       156 ~~~p~~~dg~~l~~~~~~~~~vtvID~~t~------~v~~qI~Vgg-~pd~~~~spdG------k~~~vt~~~se~~~~i  222 (595)
T 1fwx_A          156 DETPLVNDGTNMEDVANYVNVFTAVDADKW------EVAWQVLVSG-NLDNCDADYEG------KWAFSTSYNSEKGMTL  222 (595)
T ss_dssp             SCEESSCSSSSTTCGGGEEEEEEEEETTTT------EEEEEEEESS-CCCCEEECSSS------SEEEEEESCTTCCSSH
T ss_pred             cccccCCCCcccccccccCceEEEEECCCC------eEEEEEEeCC-CccceEECCCC------CEEEEEecCcccCcch
Confidence                             3467899998865      5555554322 35677889998      666666533       


Q ss_pred             --------------------------------CEEEEECCC--CCcc-eeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCc
Q 008363          257 --------------------------------GLKFWDIRD--PFRP-LWDIHPAPKFIYGLDWLPDPGCVILSFD-DGA  300 (568)
Q Consensus       257 --------------------------------~v~lwD~~~--~~~~-~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~  300 (568)
                                                      +|.+.|.++  . .. +..+.. .....++.++|||+++++++. +.+
T Consensus       223 ~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~-~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~  300 (595)
T 1fwx_A          223 PEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS-SLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPT  300 (595)
T ss_dssp             HHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGC-CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSB
T ss_pred             hhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCC-ceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCe
Confidence                                            267777776  3 22 222211 123467899999999998865 899


Q ss_pred             EEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC----------Ceee
Q 008363          301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA----------KAVE  370 (568)
Q Consensus       301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~----------~~~~  370 (568)
                      |.++|+.+...-  ..|++-  .....+..+. -....+.++|+|+|...++.-.|+.|.+||+..          ....
T Consensus       301 VsVid~~~~~~~--~~~~l~--~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi  375 (595)
T 1fwx_A          301 VTVLDVTRFDAV--FYENAD--PRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIK  375 (595)
T ss_dssp             EEEEEGGGHHHH--HHSCCC--GGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEE
T ss_pred             EEEEECcccccc--cccccC--cccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeE
Confidence            999999753100  001110  0001112222 224568899999995556677899999999976          2222


Q ss_pred             ccCCCCCcceeeee----cccCCCCceEEcccC
Q 008363          371 KDHSRNRPMHFLCG----SVTEDESAITVNTPL  399 (568)
Q Consensus       371 ~~~~~~~~~~~~~~----s~~~~~~~i~~~~~~  399 (568)
                      .....+..|-..+.    .+++||..+.+....
T Consensus       376 ~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~  408 (595)
T 1fwx_A          376 DKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF  408 (595)
T ss_dssp             EEEECSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred             EEeecccccccceeccceEeCCCCCEEEEcCCC
Confidence            22223333322333    557889888875433

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.21  E-value=7.6e-05  Score=76.43  Aligned_cols=98  Identities=10%  Similarity=-0.011  Sum_probs=70.4

Q ss_pred             CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEe----------C
Q 008363          132 GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC----------H  201 (568)
Q Consensus       132 g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs----------~  201 (568)
                      +.|.++|..+++.+..+..                         +.   .| .+.++  |+|++|+++.          .
T Consensus        99 ~~VsVID~~t~~vv~~I~v-------------------------G~---~P-gia~S--pDgk~lyVan~~~~~~~~G~~  147 (426)
T 3c75_H           99 TQQFVIDGSTGRILGMTDG-------------------------GF---LP-HPVAA--EDGSFFAQASTVFERIARGKR  147 (426)
T ss_dssp             EEEEEEETTTTEEEEEEEE-------------------------CS---SC-EEEEC--TTSSCEEEEEEEEEETTEEEE
T ss_pred             CeEEEEECCCCEEEEEEEC-------------------------CC---CC-ceEEC--CCCCEEEEEeccccccccCCC
Confidence            7999999999888877621                         11   14 67877  8899888776          3


Q ss_pred             CCeEEEEEccCCCCCCCCceeEEeeCC-------CCCeeEEEEccCCCCCCCCcEEEEEcC--CC-EEEEECCCCCccee
Q 008363          202 DGTVALWKFVASDSSIDSRPLLCFSAD-------TLPIRAVSWAPAESDSDSANVILTAGH--GG-LKFWDIRDPFRPLW  271 (568)
Q Consensus       202 Dg~I~iwd~~~~~~~~~~~~~~~~~~h-------~~~V~~v~~~p~~~~~~~~~~las~s~--d~-v~lwD~~~~~~~~~  271 (568)
                      ++.|.++|..+.      +.+..+.-.       ......++|+|++      ++++.+..  ++ |.+.|+.+. +.+.
T Consensus       148 ~~~VsviD~~t~------~vv~~I~v~g~~r~~~g~~P~~~~~spDG------k~lyV~n~~~~~~VsVID~~t~-kvv~  214 (426)
T 3c75_H          148 TDYVEVFDPVTF------LPIADIELPDAPRFLVGTYQWMNALTPDN------KNLLFYQFSPAPAVGVVDLEGK-TFDR  214 (426)
T ss_dssp             EEEEEEECTTTC------CEEEEEEETTCCCCCBSCCGGGSEECTTS------SEEEEEECSSSCEEEEEETTTT-EEEE
T ss_pred             CCEEEEEECCCC------cEEEEEECCCccccccCCCcceEEEcCCC------CEEEEEecCCCCeEEEEECCCC-eEEE
Confidence            678999999876      566555321       2345678999999      67776653  45 999999987 5554


Q ss_pred             ee
Q 008363          272 DI  273 (568)
Q Consensus       272 ~~  273 (568)
                      .+
T Consensus       215 ~I  216 (426)
T 3c75_H          215 ML  216 (426)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.20  E-value=0.00023  Score=78.11  Aligned_cols=159  Identities=14%  Similarity=0.113  Sum_probs=100.7

Q ss_pred             EEEEccCCCCCEEEEEeCCCe-------------------EEEEEccCCCCCCCCceeEEeeC--CC-------CCeeEE
Q 008363          184 TMEWSTSPPHDYLLAGCHDGT-------------------VALWKFVASDSSIDSRPLLCFSA--DT-------LPIRAV  235 (568)
Q Consensus       184 ~v~~s~~~~g~~l~sgs~Dg~-------------------I~iwd~~~~~~~~~~~~~~~~~~--h~-------~~V~~v  235 (568)
                      .+++.  +++.+|+.++.++.                   |..||..++      +.+..+..  |.       .++...
T Consensus       239 ~~~~d--~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG------~~~W~~~~~~~d~wd~~~~~~~~l~  310 (689)
T 1yiq_A          239 SFAYD--PELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTG------EYVWHYQTTPGDAWDYTATQHMILA  310 (689)
T ss_dssp             CEEEE--TTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTC------CEEEEEESSTTCCSCCCCCSCEEEE
T ss_pred             ceeEc--CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCC------ceeEeeecCCcccccccCCCCcEEE
Confidence            45666  66779999988764                   999999987      56655543  32       112222


Q ss_pred             EEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCC-C---------------------------C---------
Q 008363          236 SWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHP-A---------------------------P---------  277 (568)
Q Consensus       236 ~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~-h---------------------------~---------  277 (568)
                      ....++.   ...+++.++.++ |+++|..++ +.+..... .                           .         
T Consensus       311 d~~~~G~---~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~  386 (689)
T 1yiq_A          311 ELPIDGK---PRKVLMQAPKNGFFYVIDRATG-ELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW  386 (689)
T ss_dssp             EEEETTE---EEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred             eeccCCc---EEEEEEEECCCCeEEEEECCCC-CEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence            2222440   012788888888 999999988 44421110 0                           0         


Q ss_pred             C--CeEEEEEcCCCCEEEEEeC---------------------------------------------CCcEEEEEccccc
Q 008363          278 K--FIYGLDWLPDPGCVILSFD---------------------------------------------DGAMRIVSLLKAA  310 (568)
Q Consensus       278 ~--~i~~l~~sp~~~~l~s~~~---------------------------------------------dg~I~lwd~~~~~  310 (568)
                      +  .-..++|+|+...+++...                                             +|.|+.||+.   
T Consensus       387 Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~---  463 (689)
T 1yiq_A          387 GAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPV---  463 (689)
T ss_dssp             CSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETT---
T ss_pred             cccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECC---
Confidence            0  0013788998888877632                                             3668888883   


Q ss_pred             cCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          311 YDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       311 ~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                           +|+.+        ..+..+ .++..-.+...+.+|++++.||.|+.||..+++..-
T Consensus       464 -----tG~~~--------W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw  510 (689)
T 1yiq_A          464 -----KQQAA--------WEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLW  510 (689)
T ss_dssp             -----TTEEE--------EEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             -----CCCeE--------eEccCC-CCccCccceECCCEEEEECCCCcEEEEECCCCccce
Confidence                 46544        244333 233334566678899999999999999999997653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.19  E-value=0.00039  Score=65.61  Aligned_cols=193  Identities=14%  Similarity=0.160  Sum_probs=118.7

Q ss_pred             eEEEeeccCCc-eeeEEEEccCCCCcccccCcccEEEEEeCCC--cEEEEECCCCceeeEEeccCCccCCCCceEEEeec
Q 008363           91 RVVLCLAHNGK-VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNG--SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPV  167 (568)
Q Consensus        91 ~~~~~~~h~~~-~v~~v~~sp~~~~~~~~~~~~~~las~s~dg--~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~  167 (568)
                      .++..+.|... .+..+.|+ ++          .++.+.+.+|  .|+++|+.+++.+..+...                
T Consensus        32 ~vv~~~phd~~~ftqGL~~~-~~----------~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~----------------   84 (262)
T 3nol_A           32 QIVHSYPHDTKAFTEGFFYR-NG----------YFYESTGLNGRSSIRKVDIESGKTLQQIELG----------------   84 (262)
T ss_dssp             EEEEEEECCTTCEEEEEEEE-TT----------EEEEEEEETTEEEEEEECTTTCCEEEEEECC----------------
T ss_pred             EEEEEecCCCCcccceEEEE-CC----------EEEEECCCCCCceEEEEECCCCcEEEEEecC----------------
Confidence            45555677653 35678888 55          5677777666  8999999999988775221                


Q ss_pred             ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363          168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA  247 (568)
Q Consensus       168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~  247 (568)
                                ....+-.++..   .+.+.++...++.+.+||..+.      +.+.++..... =..++  +++.     
T Consensus        85 ----------~~~FgeGit~~---g~~ly~ltw~~~~v~v~D~~t~------~~~~ti~~~~e-G~glt--~dg~-----  137 (262)
T 3nol_A           85 ----------KRYFGEGISDW---KDKIVGLTWKNGLGFVWNIRNL------RQVRSFNYDGE-GWGLT--HNDQ-----  137 (262)
T ss_dssp             ----------TTCCEEEEEEE---TTEEEEEESSSSEEEEEETTTC------CEEEEEECSSC-CCCEE--ECSS-----
T ss_pred             ----------CccceeEEEEe---CCEEEEEEeeCCEEEEEECccC------cEEEEEECCCC-ceEEe--cCCC-----
Confidence                      01101234433   2345555556899999999876      77777754222 13343  4551     


Q ss_pred             cEEEEEcCCCEEEEECCCCCcceeeeCC----CC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccC
Q 008363          248 NVILTAGHGGLKFWDIRDPFRPLWDIHP----AP-KFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAG  322 (568)
Q Consensus       248 ~~las~s~d~v~lwD~~~~~~~~~~~~~----h~-~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~  322 (568)
                      .+++|-+.+.|.++|..+. +.+..+.-    .. ..++.+.|. +|+..+..-.++.|.+.|..        +|+.+  
T Consensus       138 ~L~~SdGs~~i~~iDp~T~-~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~--------tG~V~--  205 (262)
T 3nol_A          138 YLIMSDGTPVLRFLDPESL-TPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPE--------TGKVT--  205 (262)
T ss_dssp             CEEECCSSSEEEEECTTTC-SEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTT--------TCBEE--
T ss_pred             EEEEECCCCeEEEEcCCCC-eEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECC--------CCcEE--
Confidence            4555544333999999976 44444321    11 345678887 67544444458899999984        46553  


Q ss_pred             ccccceEEEec------------CCCCEEEEEEecCCCEEEEEeC
Q 008363          323 TKQQGLHLVNC------------SSFAIWSVQVSRLTGMVAYCSA  355 (568)
Q Consensus       323 ~~~~~l~~~~~------------h~~~V~~l~~sp~~~~l~s~s~  355 (568)
                            ..+..            -....+.|+|+|+++.|+..+.
T Consensus       206 ------~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          206 ------GIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             ------EEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             ------EEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence                  22221            1235689999999877766663

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.16  E-value=0.0023  Score=62.47  Aligned_cols=228  Identities=11%  Similarity=0.044  Sum_probs=128.3

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      ....++|.+++          .++++-..++.|..||... .....+                 .        .  ... 
T Consensus        33 ~pegia~~~~g----------~lyv~d~~~~~I~~~d~~g-~~~~~~-----------------~--------~--~~~-   73 (306)
T 2p4o_A           33 FLENLASAPDG----------TIFVTNHEVGEIVSITPDG-NQQIHA-----------------T--------V--EGK-   73 (306)
T ss_dssp             CEEEEEECTTS----------CEEEEETTTTEEEEECTTC-CEEEEE-----------------E--------C--SSE-
T ss_pred             CcceEEECCCC----------CEEEEeCCCCeEEEECCCC-ceEEEE-----------------e--------C--CCC-
Confidence            45589999988          6777766889999998765 222111                 0        0  112 


Q ss_pred             ceEEEEccCCCCCEEEEEeCCC--eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-E
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDG--TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-L  258 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v  258 (568)
                      +..+++.  ++|+++++.....  .|..+|..++..    ..+..+ ........++..+.+      .++++-...+ |
T Consensus        74 p~gia~~--~dG~l~vad~~~~~~~v~~~d~~~g~~----~~~~~~-~~~~~~~g~~~~~~~------~~~v~d~~~g~i  140 (306)
T 2p4o_A           74 VSGLAFT--SNGDLVATGWNADSIPVVSLVKSDGTV----ETLLTL-PDAIFLNGITPLSDT------QYLTADSYRGAI  140 (306)
T ss_dssp             EEEEEEC--TTSCEEEEEECTTSCEEEEEECTTSCE----EEEEEC-TTCSCEEEEEESSSS------EEEEEETTTTEE
T ss_pred             ceeEEEc--CCCcEEEEeccCCcceEEEEcCCCCeE----EEEEeC-CCccccCcccccCCC------cEEEEECCCCeE
Confidence            3788887  7888666654432  466666555411    222222 122334556655554      5566655566 9


Q ss_pred             EEEECCCCCcceee---------eCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363          259 KFWDIRDPFRPLWD---------IHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       259 ~lwD~~~~~~~~~~---------~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                      .++|.......+..         ....-...+.|  +|++.+|+.+. ..+.|..||+..       .|..-      ..
T Consensus       141 ~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~-------~g~~~------~~  205 (306)
T 2p4o_A          141 WLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDS-------TDKPG------EP  205 (306)
T ss_dssp             EEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCT-------TSCBC------CC
T ss_pred             EEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCC-------CCCCC------cc
Confidence            99997653111110         01111234566  88888777764 478999999842       12210      01


Q ss_pred             EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc-CCCCCcceeeeeccc---CCCCceEEccc
Q 008363          329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD-HSRNRPMHFLCGSVT---EDESAITVNTP  398 (568)
Q Consensus       329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~s~~---~~~~~i~~~~~  398 (568)
                      ..+... .....++++++|.++++....+.|.+++.. +..... ..........+.++.   +++..|.+.+.
T Consensus       206 ~~~~~~-~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          206 EIFVEQ-TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             EEEEES-CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             EEEecc-CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence            122111 234668999999887777778899999976 333211 011112223344555   66677766543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.13  E-value=0.00015  Score=71.34  Aligned_cols=176  Identities=12%  Similarity=0.017  Sum_probs=112.9

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD  202 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D  202 (568)
                      +.|.+++.++.|..+|.. ++......                          .+...+ .++...  +++ .|..|+.+
T Consensus       108 ~~l~v~t~~~~l~~~d~~-g~~~~~~~--------------------------~~~~~~-~~~~~~--~~g-~l~vgt~~  156 (330)
T 3hxj_A          108 DILYVTSMDGHLYAINTD-GTEKWRFK--------------------------TKKAIY-ATPIVS--EDG-TIYVGSND  156 (330)
T ss_dssp             TEEEEECTTSEEEEECTT-SCEEEEEE--------------------------CSSCCC-SCCEEC--TTS-CEEEECTT
T ss_pred             CEEEEEecCCEEEEEcCC-CCEEEEEc--------------------------CCCcee-eeeEEc--CCC-EEEEEcCC
Confidence            467778888888888887 55443321                          111222 344433  455 57778888


Q ss_pred             CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcceeeeCCCCCCeEE
Q 008363          203 GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYG  282 (568)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~~~~~~h~~~i~~  282 (568)
                      +.|..||.. +      ..+..+......+.++.+.+++      .+++++  ++|..+| .++ ..+..+......+.+
T Consensus       157 ~~l~~~d~~-g------~~~~~~~~~~~~~~~~~~d~~g------~l~v~t--~~l~~~d-~~g-~~~~~~~~~~~~~~~  219 (330)
T 3hxj_A          157 NYLYAINPD-G------TEKWRFKTNDAITSAASIGKDG------TIYFGS--DKVYAIN-PDG-TEKWNFYAGYWTVTR  219 (330)
T ss_dssp             SEEEEECTT-S------CEEEEEECSSCCCSCCEECTTC------CEEEES--SSEEEEC-TTS-CEEEEECCSSCCCSC
T ss_pred             CEEEEECCC-C------CEeEEEecCCCceeeeEEcCCC------EEEEEe--CEEEEEC-CCC-cEEEEEccCCcceec
Confidence            999999987 5      4555555555667788887777      555544  5599999 555 555555555566788


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 008363          283 LDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRF  362 (568)
Q Consensus       283 l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iw  362 (568)
                      +...++|. |.+++.++.|..+|.         +|+.+        ..+......+.++.+.+++ .|..++.+|.|..+
T Consensus       220 ~~~~~~g~-l~v~t~~~gl~~~~~---------~g~~~--------~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~  280 (330)
T 3hxj_A          220 PAISEDGT-IYVTSLDGHLYAINP---------DGTEK--------WRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAI  280 (330)
T ss_dssp             CEECTTSC-EEEEETTTEEEEECT---------TSCEE--------EEEECSSCCCSCCEECTTS-CEEEECTTCEEEEE
T ss_pred             eEECCCCe-EEEEcCCCeEEEECC---------CCCEe--------EEeeCCCCccccceEcCCC-eEEEecCCCCEEEE
Confidence            88888875 666777888888875         23332        3333333333445555444 57778888899999


Q ss_pred             EcC
Q 008363          363 QLT  365 (568)
Q Consensus       363 d~~  365 (568)
                      |..
T Consensus       281 d~~  283 (330)
T 3hxj_A          281 NPD  283 (330)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            863

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.06  E-value=0.00019  Score=78.54  Aligned_cols=218  Identities=15%  Similarity=0.136  Sum_probs=125.8

Q ss_pred             cEEEEEeC------CCcEEEEECCCCceeeEEeccCCccCCCC-------ceEEEeec-ceecccccCCcCccceEEEEc
Q 008363          123 GYLAVLLG------NGSLEVWEVPLLRTMKAIYLSSMKEGTDP-------RFVKLEPV-FRCSMLKCGGTQSIPLTMEWS  188 (568)
Q Consensus       123 ~~las~s~------dg~V~iwd~~~~~~~~~l~~~~~~~~~~~-------~~v~~~~~-~~~~~~~~~h~~~V~~~v~~s  188 (568)
                      ..+++++.      +|.|+.||..+|+.+-.+....... ...       .-...|+. ...... .+..... ..+++.
T Consensus       175 ~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~-~~~~~~~~~~~g~~~w~~~g~~~~~-~~g~~~w-~~~~~d  251 (677)
T 1kb0_A          175 GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDP-SKPFEDESMKRAARTWDPSGKWWEA-GGGGTMW-DSMTFD  251 (677)
T ss_dssp             TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT-TSCCSSHHHHHHHTTSCGGGCHHHH-CEECCCC-SCEEEE
T ss_pred             CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCc-cccccccccccccccccccCceeEe-CCCcccc-cceeEc
Confidence            35555553      7999999999998886654321100 000       00000100 000000 0111122 345666


Q ss_pred             cCCCCCEEEEEeCCC-------------------eEEEEEccCCCCCCCCceeEEeeC--CC-------CCeeEEEEccC
Q 008363          189 TSPPHDYLLAGCHDG-------------------TVALWKFVASDSSIDSRPLLCFSA--DT-------LPIRAVSWAPA  240 (568)
Q Consensus       189 ~~~~g~~l~sgs~Dg-------------------~I~iwd~~~~~~~~~~~~~~~~~~--h~-------~~V~~v~~~p~  240 (568)
                        +++.+|+.++.++                   +|..+|..++      +.+..+..  |.       ....-+....+
T Consensus       252 --~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG------~~~W~~~~~~~d~wd~~~~~~p~l~~~~~d  323 (677)
T 1kb0_A          252 --AELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG------KYKWHYQETPGDNWDYTSTQPMILADIKIA  323 (677)
T ss_dssp             --TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC------CEEEEEESSTTCCSCCCCCSCCEEEEEEET
T ss_pred             --CCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCC------CEEEEEecCCCcccccccCCCcEEEecccC
Confidence              6677888887764                   5888998877      55555432  32       11222222234


Q ss_pred             CCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCC-----------CCe------------------------EEEE
Q 008363          241 ESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAP-----------KFI------------------------YGLD  284 (568)
Q Consensus       241 ~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~-----------~~i------------------------~~l~  284 (568)
                      |.   ...+++.++.++ |+++|..++ +.+..+....           .++                        ..++
T Consensus       324 G~---~~~~l~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a  399 (677)
T 1kb0_A          324 GK---PRKVILHAPKNGFFFVLDRTNG-KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMS  399 (677)
T ss_dssp             TE---EEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCE
T ss_pred             Cc---EeeEEEEECCCCEEEEEECCCC-CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCce
Confidence            30   013678888888 999999988 5554332110           001                        1578


Q ss_pred             EcCCCCEEEEEeCC-------------------------------------------CcEEEEEccccccCCCCCCCCcc
Q 008363          285 WLPDPGCVILSFDD-------------------------------------------GAMRIVSLLKAAYDVPATGKPFA  321 (568)
Q Consensus       285 ~sp~~~~l~s~~~d-------------------------------------------g~I~lwd~~~~~~~~~~~g~~~~  321 (568)
                      |+|+...+++...+                                           |.|..||+.        +|+.+ 
T Consensus       400 ~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~--------tG~~~-  470 (677)
T 1kb0_A          400 FNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPV--------AQKAA-  470 (677)
T ss_dssp             EETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETT--------TTEEE-
T ss_pred             EcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCC--------CCcEE-
Confidence            89998888876432                                           678888883        46544 


Q ss_pred             CccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          322 GTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       322 ~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                             ..+. +..+++...+...+.++++++.||.+++||+.+++....
T Consensus       471 -------W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~  513 (677)
T 1kb0_A          471 -------WSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWE  513 (677)
T ss_dssp             -------EEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             -------eecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeee
Confidence                   2333 333455556777888899999999999999999877644

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.06  E-value=0.003  Score=58.93  Aligned_cols=192  Identities=9%  Similarity=0.076  Sum_probs=118.8

Q ss_pred             eEEEeeccCC-ceeeEEEEccCCCCcccccCcccEEEEEeCCC--cEEEEECCCCceeeEEeccCCccCCCCceEEEeec
Q 008363           91 RVVLCLAHNG-KVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNG--SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPV  167 (568)
Q Consensus        91 ~~~~~~~h~~-~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg--~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~  167 (568)
                      .++..+.|+. ..+..+.|++ +          .++.+.+.+|  .|+++|+.+++.+..+...                
T Consensus        10 ~v~~~~phd~~~ftqGL~~~~-~----------~LyestG~~g~S~v~~vD~~tgkv~~~~~l~----------------   62 (243)
T 3mbr_X           10 RVVKRYPHDTTAFTEGLFYLR-G----------HLYESTGETGRSSVRKVDLETGRILQRAEVP----------------   62 (243)
T ss_dssp             EEEEEEECCTTCCEEEEEEET-T----------EEEEEECCTTSCEEEEEETTTCCEEEEEECC----------------
T ss_pred             EEEEEcCCCCccccccEEEEC-C----------EEEEECCCCCCceEEEEECCCCCEEEEEeCC----------------
Confidence            4555567765 3455788887 4          4666666654  8999999999988775221                


Q ss_pred             ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363          168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA  247 (568)
Q Consensus       168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~  247 (568)
                              .+.  .+-.++..   .+.+.+....++.+.+||..+.      +.+.++.... .=..++  +++.     
T Consensus        63 --------~~~--fgeGi~~~---~~~ly~ltw~~~~v~v~D~~tl------~~~~ti~~~~-~Gwglt--~dg~-----  115 (243)
T 3mbr_X           63 --------PPY--FGAGIVAW---RDRLIQLTWRNHEGFVYDLATL------TPRARFRYPG-EGWALT--SDDS-----  115 (243)
T ss_dssp             --------TTC--CEEEEEEE---TTEEEEEESSSSEEEEEETTTT------EEEEEEECSS-CCCEEE--ECSS-----
T ss_pred             --------CCc--ceeEEEEe---CCEEEEEEeeCCEEEEEECCcC------cEEEEEeCCC-CceEEe--eCCC-----
Confidence                    111  01334433   3355666667899999999876      7777775432 224554  4441     


Q ss_pred             cEEEEEcCCCEEEEECCCCCcceeeeCC--CC---CCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccC
Q 008363          248 NVILTAGHGGLKFWDIRDPFRPLWDIHP--AP---KFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAG  322 (568)
Q Consensus       248 ~~las~s~d~v~lwD~~~~~~~~~~~~~--h~---~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~  322 (568)
                      .+++|-+.+.|.++|..+. +.+..+.-  +.   ..++.+.|. +|+..+..-.+..|.+.|.+        +|+.+  
T Consensus       116 ~L~vSdgs~~l~~iDp~t~-~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~--------tG~V~--  183 (243)
T 3mbr_X          116 HLYMSDGTAVIRKLDPDTL-QQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPA--------SGKVV--  183 (243)
T ss_dssp             CEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTT--------TCBEE--
T ss_pred             EEEEECCCCeEEEEeCCCC-eEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECC--------CCCEE--
Confidence            5666655333999999976 44444432  11   345677776 56544444457789999984        46553  


Q ss_pred             ccccceEEEe-------------cCCCCEEEEEEecCCCEEEEEe
Q 008363          323 TKQQGLHLVN-------------CSSFAIWSVQVSRLTGMVAYCS  354 (568)
Q Consensus       323 ~~~~~l~~~~-------------~h~~~V~~l~~sp~~~~l~s~s  354 (568)
                            ..+.             .-....+.|+|+|++..|+..+
T Consensus       184 ------~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          184 ------AWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             ------EEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             ------EEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence                  2222             1123678999999876666655

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.04  E-value=0.00019  Score=70.63  Aligned_cols=175  Identities=9%  Similarity=0.006  Sum_probs=108.9

Q ss_pred             EEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCC
Q 008363          124 YLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDG  203 (568)
Q Consensus       124 ~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg  203 (568)
                      .|..++.++.|..||.. ++.+..+.                          .....+ .++...  +++. |..++  +
T Consensus       149 ~l~vgt~~~~l~~~d~~-g~~~~~~~--------------------------~~~~~~-~~~~~d--~~g~-l~v~t--~  195 (330)
T 3hxj_A          149 TIYVGSNDNYLYAINPD-GTEKWRFK--------------------------TNDAIT-SAASIG--KDGT-IYFGS--D  195 (330)
T ss_dssp             CEEEECTTSEEEEECTT-SCEEEEEE--------------------------CSSCCC-SCCEEC--TTCC-EEEES--S
T ss_pred             EEEEEcCCCEEEEECCC-CCEeEEEe--------------------------cCCCce-eeeEEc--CCCE-EEEEe--C
Confidence            46667778888888887 66554431                          112223 445543  5664 55555  7


Q ss_pred             eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcceeeeCCCCCCeEEE
Q 008363          204 TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGL  283 (568)
Q Consensus       204 ~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~~~~~~h~~~i~~l  283 (568)
                      .|..|| .++      ..+..+......+.++...+++      .+++.+..++|..+|.. + ..+..+......+..+
T Consensus       196 ~l~~~d-~~g------~~~~~~~~~~~~~~~~~~~~~g------~l~v~t~~~gl~~~~~~-g-~~~~~~~~~~~~~~~~  260 (330)
T 3hxj_A          196 KVYAIN-PDG------TEKWNFYAGYWTVTRPAISEDG------TIYVTSLDGHLYAINPD-G-TEKWRFKTGKRIESSP  260 (330)
T ss_dssp             SEEEEC-TTS------CEEEEECCSSCCCSCCEECTTS------CEEEEETTTEEEEECTT-S-CEEEEEECSSCCCSCC
T ss_pred             EEEEEC-CCC------cEEEEEccCCcceeceEECCCC------eEEEEcCCCeEEEECCC-C-CEeEEeeCCCCccccc
Confidence            889999 544      4455555555668888888887      56655444458888753 3 4444444333334456


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363          284 DWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQ  363 (568)
Q Consensus       284 ~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd  363 (568)
                      .+.+++ .|.+++.+|.|..+|.         +|+.+        ..+......+.++...+++. |..++.+|.+++..
T Consensus       261 ~~~~~g-~l~v~t~~ggl~~~d~---------~g~~~--------~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~  321 (330)
T 3hxj_A          261 VIGNTD-TIYFGSYDGHLYAINP---------DGTEK--------WNFETGSWIIATPVIDENGT-IYFGTRNGKFYALF  321 (330)
T ss_dssp             EECTTS-CEEEECTTCEEEEECT---------TSCEE--------EEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEE
T ss_pred             eEcCCC-eEEEecCCCCEEEECC---------CCcEE--------EEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEe
Confidence            666565 4777888888999985         24332        34444445566777766665 66688899999987


Q ss_pred             cC
Q 008363          364 LT  365 (568)
Q Consensus       364 ~~  365 (568)
                      ..
T Consensus       322 ~~  323 (330)
T 3hxj_A          322 NL  323 (330)
T ss_dssp             C-
T ss_pred             cc
Confidence            74

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.99  E-value=0.0014  Score=64.49  Aligned_cols=209  Identities=12%  Similarity=-0.008  Sum_probs=118.1

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecc----cccCCcCc
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSM----LKCGGTQS  180 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~----~~~~h~~~  180 (568)
                      +++|.+++          .+|.++..++.|..|+..++... .+......          +....|..    ........
T Consensus        23 ~i~~d~~g----------~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~----------~~~~~~~g~~~~~~~~~~~~   81 (322)
T 2fp8_A           23 SFTFDSTN----------KGFYTSVQDGRVIKYEGPNSGFV-DFAYASPY----------WNKAFCENSTDAEKRPLCGR   81 (322)
T ss_dssp             CEECCTTC----------SSEEEECTTSEEEEECCTTTCEE-EEEESCTT----------CCHHHHTTCCCGGGHHHHCC
T ss_pred             EEEEcCCC----------CEEEEEcCCCeEEEECCCCCceE-EEeccccc----------ccccccccccchhccccCCC
Confidence            78899988          67888888999999988764332 22110000          00000000    00000122


Q ss_pred             cceEEEEccCC-CCCEEEEEeCCCeEEEEEccCCCCCCCCceeE-EeeC-CCCCeeEEEEcc-CCCCCCCCcEEEEEcC-
Q 008363          181 IPLTMEWSTSP-PHDYLLAGCHDGTVALWKFVASDSSIDSRPLL-CFSA-DTLPIRAVSWAP-AESDSDSANVILTAGH-  255 (568)
Q Consensus       181 V~~~v~~s~~~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~-h~~~V~~v~~~p-~~~~~~~~~~las~s~-  255 (568)
                       |..+++.  + ++ .|+++...+.|..+|..++..    ..+. ...+ .......+++.+ ++      +++++... 
T Consensus        82 -p~gi~~~--~~~g-~l~v~d~~~~i~~~d~~~g~~----~~~~~~~~~~~~~~p~~i~~d~~~G------~l~v~d~~~  147 (322)
T 2fp8_A           82 -TYDISYN--LQNN-QLYIVDCYYHLSVVGSEGGHA----TQLATSVDGVPFKWLYAVTVDQRTG------IVYFTDVST  147 (322)
T ss_dssp             -EEEEEEE--TTTT-EEEEEETTTEEEEECTTCEEC----EEEESEETTEECSCEEEEEECTTTC------CEEEEESCS
T ss_pred             -CceEEEc--CCCC-cEEEEECCCCEEEEeCCCCEE----EEecccCCCCcccccceEEEecCCC------EEEEECCcc
Confidence             3778877  6 44 566665556688888664311    1111 1111 123478899999 88      77776543 


Q ss_pred             ----------------CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCCCC
Q 008363          256 ----------------GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPATG  317 (568)
Q Consensus       256 ----------------d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g  317 (568)
                                      ++ |..||..+. ....... .-...+.|+|+|++++|+.+ ...+.|..|++....     .+
T Consensus       148 ~~~~~~~~~~~~~~~~~g~v~~~d~~~~-~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~-----~~  220 (322)
T 2fp8_A          148 LYDDRGVQQIMDTSDKTGRLIKYDPSTK-ETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK-----KG  220 (322)
T ss_dssp             SCCTTCHHHHHHHTCCCEEEEEEETTTT-EEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTT-----TT
T ss_pred             cccccccceehcccCCCceEEEEeCCCC-EEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCc-----CC
Confidence                            25 888888655 2211111 11224679999999977766 457899999984210     11


Q ss_pred             CCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeC----------CCeEEEEEcC
Q 008363          318 KPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSA----------DGTVHRFQLT  365 (568)
Q Consensus       318 ~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~----------Dg~v~iwd~~  365 (568)
                      .         ...+....+ ...+++.++|.+.++...          .+.|..++..
T Consensus       221 ~---------~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~  268 (322)
T 2fp8_A          221 T---------AEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF  268 (322)
T ss_dssp             C---------EEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred             c---------cceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC
Confidence            1         112221223 688999999987776654          4567777764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.94  E-value=0.00028  Score=77.29  Aligned_cols=78  Identities=15%  Similarity=0.145  Sum_probs=51.8

Q ss_pred             C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCC
Q 008363          257 G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS  335 (568)
Q Consensus       257 ~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~  335 (568)
                      + |..||+.++ +.++.+. +...+....+...+..+++++.||.|++||.+        +|+.+        ..+....
T Consensus       457 g~l~A~D~~tG-~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~--------tG~~l--------w~~~~~~  518 (677)
T 1kb0_A          457 GRLLAWDPVAQ-KAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAA--------TGEKL--------WEAPTGT  518 (677)
T ss_dssp             EEEEEEETTTT-EEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETT--------TCCEE--------EEEECSS
T ss_pred             cEEEEEeCCCC-cEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECC--------CCcee--------eeeeCCC
Confidence            5 999999988 6666654 23334455566778889999999999999994        57654        4554332


Q ss_pred             -CCEEEEEEecCCC-EEEE
Q 008363          336 -FAIWSVQVSRLTG-MVAY  352 (568)
Q Consensus       336 -~~V~~l~~sp~~~-~l~s  352 (568)
                       ....-+.|..+|+ ++++
T Consensus       519 ~~~~~p~~y~~~G~~~v~~  537 (677)
T 1kb0_A          519 GVVAAPSTYMVDGRQYVSV  537 (677)
T ss_dssp             CCCSCCEEEEETTEEEEEE
T ss_pred             CcccCCEEEEeCCEEEEEE
Confidence             2223355677885 4444

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.94  E-value=0.0073  Score=57.39  Aligned_cols=155  Identities=5%  Similarity=-0.021  Sum_probs=98.1

Q ss_pred             eEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363          183 LTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF  260 (568)
Q Consensus       183 ~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l  260 (568)
                      ..++|+  +++. ++++-..++.|..+++...      .....+.........|++++.+     ..++++-...+ |.+
T Consensus        39 ~gi~~d--~~~~~ly~~d~~~~~I~~~~~~g~------~~~~~~~~~~~~p~~ia~d~~~-----~~lyv~d~~~~~I~~  105 (267)
T 1npe_A           39 IGLAFD--CVDKVVYWTDISEPSIGRASLHGG------EPTTIIRQDLGSPEGIALDHLG-----RTIFWTDSQLDRIEV  105 (267)
T ss_dssp             EEEEEE--TTTTEEEEEETTTTEEEEEESSSC------CCEEEECTTCCCEEEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred             EEEEEe--cCCCEEEEEECCCCEEEEEecCCC------CcEEEEECCCCCccEEEEEecC-----CeEEEEECCCCEEEE
Confidence            788888  6444 4455556789999998754      2222332333568899999965     15555555556 999


Q ss_pred             EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEccccccCCCCCCCCccCccccceEEEe-cCCC
Q 008363          261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD---DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN-CSSF  336 (568)
Q Consensus       261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~---dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~-~h~~  336 (568)
                      +|+..... .............++++|++..|+.+..   .+.|..+++.         |...        ..+. ..-.
T Consensus       106 ~~~~g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d---------g~~~--------~~~~~~~~~  167 (267)
T 1npe_A          106 AKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD---------GTNR--------RILAQDNLG  167 (267)
T ss_dssp             EETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT---------SCCC--------EEEECTTCS
T ss_pred             EEcCCCCE-EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC---------CCCc--------EEEEECCCC
Confidence            99875422 2222222245689999997776666654   3688888873         3221        1221 2234


Q ss_pred             CEEEEEEecCCCEEE-EEeCCCeEEEEEcCCCe
Q 008363          337 AIWSVQVSRLTGMVA-YCSADGTVHRFQLTAKA  368 (568)
Q Consensus       337 ~V~~l~~sp~~~~l~-s~s~Dg~v~iwd~~~~~  368 (568)
                      ....+++++++..|. +-...+.|.++++....
T Consensus       168 ~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~  200 (267)
T 1npe_A          168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG  200 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred             CCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc
Confidence            568999999876554 44566899999997543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.93  E-value=0.0015  Score=61.58  Aligned_cols=189  Identities=8%  Similarity=0.066  Sum_probs=117.9

Q ss_pred             eEEEeeccCCc-eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecce
Q 008363           91 RVVLCLAHNGK-VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFR  169 (568)
Q Consensus        91 ~~~~~~~h~~~-~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~  169 (568)
                      .++..+.|... .+..+.|+. +          .++.+.+.+|.|+++|+.+++.+..+ ..                  
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~~-~----------~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~------------------   93 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFHQ-G----------HFFESTGHQGTLRQLSLESAQPVWME-RL------------------   93 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEET-T----------EEEEEETTTTEEEECCSSCSSCSEEE-EC------------------
T ss_pred             EEEEEEcCCCccccceEEEEC-C----------EEEEEcCCCCEEEEEECCCCcEEeEE-CC------------------
Confidence            45555667653 345788874 4          57888888899999999998887664 11                  


Q ss_pred             ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcE
Q 008363          170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV  249 (568)
Q Consensus       170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~  249 (568)
                            ..  ..+-.++..   .+.+.++...++.+.+||..+.      +.+.++..- ..-..++  +++      ..
T Consensus        94 ------~~--~FgeGit~~---g~~Ly~ltw~~~~v~V~D~~Tl------~~~~ti~~~-~eGwGLt--~Dg------~~  147 (268)
T 3nok_A           94 ------GN--IFAEGLASD---GERLYQLTWTEGLLFTWSGMPP------QRERTTRYS-GEGWGLC--YWN------GK  147 (268)
T ss_dssp             ------TT--CCEEEEEEC---SSCEEEEESSSCEEEEEETTTT------EEEEEEECS-SCCCCEE--EET------TE
T ss_pred             ------CC--cceeEEEEe---CCEEEEEEccCCEEEEEECCcC------cEEEEEeCC-CceeEEe--cCC------CE
Confidence                  10  001235533   2356666667899999999876      777777542 2223444  445      34


Q ss_pred             EEEEcCCC-EEEEECCCCCcceeeeCC--CC---CCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccC
Q 008363          250 ILTAGHGG-LKFWDIRDPFRPLWDIHP--AP---KFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAG  322 (568)
Q Consensus       250 las~s~d~-v~lwD~~~~~~~~~~~~~--h~---~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~  322 (568)
                      |+.+..+. |.++|..+. +.+..+.-  +.   ..++.+.|. +|+ |++.. .++.|.+.|..        +|+.+  
T Consensus       148 L~vSdGs~~l~~iDp~T~-~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~--------TG~V~--  214 (268)
T 3nok_A          148 LVRSDGGTMLTFHEPDGF-ALVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVLEIDPA--------TGTVV--  214 (268)
T ss_dssp             EEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEEEECTT--------TCBEE--
T ss_pred             EEEECCCCEEEEEcCCCC-eEEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEEEEeCC--------CCcEE--
Confidence            44444445 999999876 44444331  22   245778887 675 55544 57899999984        46554  


Q ss_pred             ccccceEEEec-------------CCCCEEEEEEecCCCEEEEEe
Q 008363          323 TKQQGLHLVNC-------------SSFAIWSVQVSRLTGMVAYCS  354 (568)
Q Consensus       323 ~~~~~l~~~~~-------------h~~~V~~l~~sp~~~~l~s~s  354 (568)
                            ..+..             -....+.|+|+|++..|+..+
T Consensus       215 ------~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          215 ------GVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             ------EEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             ------EEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence                  22221             124678999999875554444

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.86  E-value=0.0012  Score=66.52  Aligned_cols=142  Identities=11%  Similarity=0.099  Sum_probs=88.8

Q ss_pred             CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCC----------e-eEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363          193 HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLP----------I-RAVSWAPAESDSDSANVILTAGHGG-LKF  260 (568)
Q Consensus       193 g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~----------V-~~v~~~p~~~~~~~~~~las~s~d~-v~l  260 (568)
                      +..+++++.+|.|..+|..++      +.+..+......          + ..... .+       ..+..++.++ |..
T Consensus       188 ~~~v~~g~~~g~l~~~d~~tG------~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~-------~~v~~~~~~g~l~~  253 (376)
T 3q7m_A          188 FGAAVVGGDNGRVSAVLMEQG------QMIWQQRISQATGSTEIDRLSDVDTTPVV-VN-------GVVFALAYNGNLTA  253 (376)
T ss_dssp             TTEEEECCTTTEEEEEETTTC------CEEEEEECCC-----------CCCCCCEE-ET-------TEEEEECTTSCEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCC------cEEEEEecccCCCCcccccccccCCCcEE-EC-------CEEEEEecCcEEEE
Confidence            357888888999999999876      444444321100          1 01111 12       3566666666 999


Q ss_pred             EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec-CCCCEE
Q 008363          261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC-SSFAIW  339 (568)
Q Consensus       261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~-h~~~V~  339 (568)
                      +|..++ ..++....  .....+...  +..|++++.++.|..+|..        +|+.+        ..... ....+.
T Consensus       254 ~d~~tG-~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~l~~~d~~--------tG~~~--------w~~~~~~~~~~~  312 (376)
T 3q7m_A          254 LDLRSG-QIMWKREL--GSVNDFIVD--GNRIYLVDQNDRVMALTID--------GGVTL--------WTQSDLLHRLLT  312 (376)
T ss_dssp             EETTTC-CEEEEECC--CCEEEEEEE--TTEEEEEETTCCEEEEETT--------TCCEE--------EEECTTTTSCCC
T ss_pred             EECCCC-cEEeeccC--CCCCCceEE--CCEEEEEcCCCeEEEEECC--------CCcEE--------EeecccCCCccc
Confidence            999987 55655542  234444443  6778888899999999984        46543        23321 111222


Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          340 SVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       340 ~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                      .+..  .+..|+.++.+|.|.++|..+++..-
T Consensus       313 ~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~  342 (376)
T 3q7m_A          313 SPVL--YNGNLVVGDSEGYLHWINVEDGRFVA  342 (376)
T ss_dssp             CCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEE--ECCEEEEEeCCCeEEEEECCCCcEEE
Confidence            2222  25778899999999999998887653

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.85  E-value=0.0022  Score=64.37  Aligned_cols=182  Identities=12%  Similarity=0.068  Sum_probs=109.9

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD  202 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D  202 (568)
                      ..|++++.++.|..+|..+++.+-.....                        +...   ......    +..+++++.+
T Consensus       104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~------------------------~~~~---~~p~~~----~~~v~v~~~~  152 (376)
T 3q7m_A          104 GHVYIGSEKAQVYALNTSDGTVAWQTKVA------------------------GEAL---SRPVVS----DGLVLIHTSN  152 (376)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECS------------------------SCCC---SCCEEE----TTEEEEECTT
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEEeCC------------------------CceE---cCCEEE----CCEEEEEcCC
Confidence            47888889999999999998876443111                        0001   111111    3588889999


Q ss_pred             CeEEEEEccCCCCCCCCceeEEeeCCCCCe-----eEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCC
Q 008363          203 GTVALWKFVASDSSIDSRPLLCFSADTLPI-----RAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPA  276 (568)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V-----~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h  276 (568)
                      |.|..+|..++      +.+..+.......     ...... +       ..++.+..++ |..+|..++ ..++.....
T Consensus       153 g~l~~~d~~tG------~~~W~~~~~~~~~~~~~~~~~~~~-~-------~~v~~g~~~g~l~~~d~~tG-~~~w~~~~~  217 (376)
T 3q7m_A          153 GQLQALNEADG------AVKWTVNLDMPSLSLRGESAPTTA-F-------GAAVVGGDNGRVSAVLMEQG-QMIWQQRIS  217 (376)
T ss_dssp             SEEEEEETTTC------CEEEEEECCC-----CCCCCCEEE-T-------TEEEECCTTTEEEEEETTTC-CEEEEEECC
T ss_pred             CeEEEEECCCC------cEEEEEeCCCCceeecCCCCcEEE-C-------CEEEEEcCCCEEEEEECCCC-cEEEEEecc
Confidence            99999999877      5554443322111     112222 3       3566677777 999999887 555544321


Q ss_pred             CC--C--eE---EEEEcC--CCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC
Q 008363          277 PK--F--IY---GLDWLP--DPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT  347 (568)
Q Consensus       277 ~~--~--i~---~l~~sp--~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~  347 (568)
                      ..  .  +.   .+.-.|  .+..+++++.++.|..+|..        +|+.++        ...  ......+..  ++
T Consensus       218 ~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~--------tG~~~w--------~~~--~~~~~~~~~--~~  277 (376)
T 3q7m_A          218 QATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLR--------SGQIMW--------KRE--LGSVNDFIV--DG  277 (376)
T ss_dssp             C-----------CCCCCCEEETTEEEEECTTSCEEEEETT--------TCCEEE--------EEC--CCCEEEEEE--ET
T ss_pred             cCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECC--------CCcEEe--------ecc--CCCCCCceE--EC
Confidence            10  0  00   011111  25678888889999999984        465532        222  223344444  46


Q ss_pred             CEEEEEeCCCeEEEEEcCCCeee
Q 008363          348 GMVAYCSADGTVHRFQLTAKAVE  370 (568)
Q Consensus       348 ~~l~s~s~Dg~v~iwd~~~~~~~  370 (568)
                      ..|+.++.++.|..+|..+++..
T Consensus       278 ~~l~~~~~~g~l~~~d~~tG~~~  300 (376)
T 3q7m_A          278 NRIYLVDQNDRVMALTIDGGVTL  300 (376)
T ss_dssp             TEEEEEETTCCEEEEETTTCCEE
T ss_pred             CEEEEEcCCCeEEEEECCCCcEE
Confidence            77888889999999999887654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.82  E-value=0.0032  Score=69.85  Aligned_cols=154  Identities=16%  Similarity=0.132  Sum_probs=90.4

Q ss_pred             eeeEEEEc-cCCCCcccccCcccEEEEEeC-CC----cEEEEECCCC-ceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363          102 VAWDVKWK-PYNAVDCKCKQRLGYLAVLLG-NG----SLEVWEVPLL-RTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus       102 ~v~~v~~s-p~~~~~~~~~~~~~~las~s~-dg----~V~iwd~~~~-~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      .+...+|| |+|          ++||.+.. +|    .|+++|+.++ +.+...               +          
T Consensus       175 ~~~~~~~S~PDG----------~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~---------------~----------  219 (751)
T 2xe4_A          175 DVMEVKPAPPEH----------DLVAFSVDMSGNEVYTIEFKRISDPSQTIADK---------------V----------  219 (751)
T ss_dssp             EEEEEEECTTTT----------CEEEEEEESSSSSCEEEEEEETTCTTCCCCCC---------------E----------
T ss_pred             EEeeeEecCCCC----------CEEEEEEeCCCCceEEEEEEECCCCCEeCCcc---------------c----------
Confidence            34578999 999          67775543 33    4999999987 532110               0          


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCC-----CeEEEEEccCCCCCCCCceeEEee-CCCCCeeEEEEccCCCCCCCCc
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHD-----GTVALWKFVASDSSIDSRPLLCFS-ADTLPIRAVSWAPAESDSDSAN  248 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~~~  248 (568)
                      .   ... ..+.|+  |||+.|+....|     ..|.++++.++.    ......+. .+......+.|+|++      +
T Consensus       220 ~---~~~-~~~~Ws--pDg~~l~y~~~d~~~~~~~v~~~~lgt~~----~~~~lv~~~~~~~~~~~~~~SpDg------~  283 (751)
T 2xe4_A          220 S---GTN-GEIVWG--PDHTSLFYVTKDETLRENKVWRHVMGKLQ----SEDVCLYEEHNPLFSAFMYKAADT------N  283 (751)
T ss_dssp             E---EEC-SCCEEC--SSTTEEEEEEECTTCCEEEEEEEETTSCG----GGCEEEEECCCTTCEEEEEECTTS------S
T ss_pred             c---Cce-eeEEEe--cCCCEEEEEEECCCCCCCEEEEEECCCCc----hhcEEEEecCCCceEEEEEECCCC------C
Confidence            0   012 567899  888887777665     257777876541    12223333 233456788999999      6


Q ss_pred             EEEEEc-C--CC-EEEEECCCCCcce--eee-CCCCCCeEEEEEcCCCCEEEEEeCC--C--cEEEEEc
Q 008363          249 VILTAG-H--GG-LKFWDIRDPFRPL--WDI-HPAPKFIYGLDWLPDPGCVILSFDD--G--AMRIVSL  306 (568)
Q Consensus       249 ~las~s-~--d~-v~lwD~~~~~~~~--~~~-~~h~~~i~~l~~sp~~~~l~s~~~d--g--~I~lwd~  306 (568)
                      +|+..+ .  .. |.++|+.++....  ..+ ........++.|+..+.+++.+..+  +  .|..+|+
T Consensus       284 ~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~  352 (751)
T 2xe4_A          284 TLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPR  352 (751)
T ss_dssp             EEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEET
T ss_pred             EEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcC
Confidence            665443 2  23 9999998753222  333 2334555667665444444444433  3  4556665

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.81  E-value=0.001  Score=66.87  Aligned_cols=90  Identities=8%  Similarity=-0.119  Sum_probs=66.1

Q ss_pred             cEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEe----------CC
Q 008363          133 SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC----------HD  202 (568)
Q Consensus       133 ~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs----------~D  202 (568)
                      +|.++|..+++.+.++..                         +..   | .+.++  |++++++++.          .+
T Consensus        47 ~vsvID~~t~~v~~~i~v-------------------------G~~---P-~i~~s--pDg~~lyVan~~~~r~~~G~~~   95 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLG-------------------------AFL---S-LAVAG--HSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             EEEEEETTTTEEEEEEEE-------------------------CTT---C-EEEEC--TTSSCEEEEEEEETTTTSSSEE
T ss_pred             eEEEEECCCCeEEEEEeC-------------------------CCC---C-ceEEC--CCCCEEEEEcccccccccCCCC
Confidence            788999999888877622                         211   4 57777  8898888886          37


Q ss_pred             CeEEEEEccCCCCCCCCceeEEeeCC-------CCCeeEEEEccCCCCCCCCcEEEEEcC--CC-EEE--EECCC
Q 008363          203 GTVALWKFVASDSSIDSRPLLCFSAD-------TLPIRAVSWAPAESDSDSANVILTAGH--GG-LKF--WDIRD  265 (568)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~~~h-------~~~V~~v~~~p~~~~~~~~~~las~s~--d~-v~l--wD~~~  265 (568)
                      ++|.+||+.+.      +.+..+..+       ......++|+|++      ++++.+..  +. |.+  +|+.+
T Consensus        96 ~~VsviD~~T~------~vv~~I~v~~~~~~~~g~~P~~ia~SpDG------k~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H           96 DYVEVFDPVTF------LPIADIELPDAPRFSVGPRVHIIGNCASS------ACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             EEEEEECTTTC------CEEEEEEETTSCSCCBSCCTTSEEECTTS------SCEEEEECSSSCEEEEEETTTEE
T ss_pred             CEEEEEECCCC------CEEEEEECCCccccccCCCcceEEEcCCC------CEEEEEccCCCCeEEEEEEchhh
Confidence            89999999977      677776533       1246789999999      67776653  34 888  99865

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.81  E-value=0.00058  Score=74.94  Aligned_cols=198  Identities=10%  Similarity=0.084  Sum_probs=118.3

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCc-CccceEEEEccCCCCCEEEEEeC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGT-QSIPLTMEWSTSPPHDYLLAGCH  201 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~-~~V~~~v~~s~~~~g~~l~sgs~  201 (568)
                      ..|++++.++.|.-+|..+|+.+-.+.......                 ...... ..+...+..    .+..|++++.
T Consensus        71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~-----------------~~~~~~~~~~~~~~~~----~~g~v~v~~~  129 (689)
T 1yiq_A           71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRH-----------------RAGEACCDAVNRGVAV----WKGKVYVGVL  129 (689)
T ss_dssp             TEEEEECGGGCEEEEETTTCCEEEEECCCCCGG-----------------GGGGCTTCSCCCCCEE----ETTEEEEECT
T ss_pred             CEEEEEcCCCeEEEEECCCCceeEEEcCCCCcc-----------------ccccccccCCCCccEE----ECCEEEEEcc
Confidence            578888889999999999988776542211000                 000000 000012222    2458899999


Q ss_pred             CCeEEEEEccCCCCCCCCceeEEeeCC--CCCeeEEEEcc---CCCCCCCCcEEEEEc-----CCC-EEEEECCCCCcce
Q 008363          202 DGTVALWKFVASDSSIDSRPLLCFSAD--TLPIRAVSWAP---AESDSDSANVILTAG-----HGG-LKFWDIRDPFRPL  270 (568)
Q Consensus       202 Dg~I~iwd~~~~~~~~~~~~~~~~~~h--~~~V~~v~~~p---~~~~~~~~~~las~s-----~d~-v~lwD~~~~~~~~  270 (568)
                      ||.|..+|..++      +.+..+...  ......+..+|   ++      .+++..+     .++ |+.||..++ +.+
T Consensus       130 dg~l~AlDa~TG------~~~W~~~~~~~~~~~~~~~~sP~v~~g------~v~vg~~~~~~~~~g~v~a~D~~tG-~~~  196 (689)
T 1yiq_A          130 DGRLEAIDAKTG------QRAWSVDTRADHKRSYTITGAPRVVNG------KVVIGNGGAEFGVRGYVTAYDAETG-KEA  196 (689)
T ss_dssp             TSEEEEEETTTC------CEEEEEECCSCTTSCCBCCSCCEEETT------EEEECCBCTTTCCBCEEEEEETTTC-CEE
T ss_pred             CCEEEEEECCCC------CEeeeecCcCCCCCCccccCCcEEECC------EEEEEeCCCccCCCCEEEEEECCCC-cEE
Confidence            999999999887      555554331  11111111112   43      4444332     256 999999988 666


Q ss_pred             eeeCCC---C----------------------------CCeEEEEEcCCCCEEEEEeCCCc-------------------
Q 008363          271 WDIHPA---P----------------------------KFIYGLDWLPDPGCVILSFDDGA-------------------  300 (568)
Q Consensus       271 ~~~~~h---~----------------------------~~i~~l~~sp~~~~l~s~~~dg~-------------------  300 (568)
                      +.+...   .                            .....++++|+...|++++.++.                   
T Consensus       197 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~  276 (689)
T 1yiq_A          197 WRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSS  276 (689)
T ss_dssp             EEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTE
T ss_pred             EEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence            554310   0                            00125788998899999887763                   


Q ss_pred             EEEEEccccccCCCCCCCCccCccccceEEEec--CC-------CCEEEEEEecCCC---EEEEEeCCCeEEEEEcCCCe
Q 008363          301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC--SS-------FAIWSVQVSRLTG---MVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~--h~-------~~V~~l~~sp~~~---~l~s~s~Dg~v~iwd~~~~~  368 (568)
                      |..||.+        +|+.++        .+..  |.       .++.......+|+   +|+.++.+|.|+++|..+++
T Consensus       277 v~AlD~~--------TG~~~W--------~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  340 (689)
T 1yiq_A          277 IVAVNAD--------TGEYVW--------HYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE  340 (689)
T ss_dssp             EEEEETT--------TCCEEE--------EEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             EEEEEcc--------CCceeE--------eeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence            8999984        576653        3332  21       2222223333554   78999999999999999987


Q ss_pred             ee
Q 008363          369 VE  370 (568)
Q Consensus       369 ~~  370 (568)
                      +.
T Consensus       341 ~l  342 (689)
T 1yiq_A          341 LL  342 (689)
T ss_dssp             EE
T ss_pred             Ee
Confidence            65

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.79  E-value=0.012  Score=55.51  Aligned_cols=200  Identities=11%  Similarity=0.131  Sum_probs=119.3

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      -+..++|+|++.         .++++...++.|...|.. ++.++.+..                        .+. ...
T Consensus        28 ~lSGla~~~~~~---------~L~aV~d~~~~I~~ld~~-g~v~~~i~l------------------------~g~-~D~   72 (255)
T 3qqz_A           28 NISSLTWSAQSN---------TLFSTINKPAAIVEMTTN-GDLIRTIPL------------------------DFV-KDL   72 (255)
T ss_dssp             CEEEEEEETTTT---------EEEEEEETTEEEEEEETT-CCEEEEEEC------------------------SSC-SSE
T ss_pred             CcceeEEeCCCC---------EEEEEECCCCeEEEEeCC-CCEEEEEec------------------------CCC-CCh
Confidence            356999999873         566668888899999988 676665411                        111 222


Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee------CCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS------ADTLPIRAVSWAPAESDSDSANVILTAGH  255 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~------~h~~~V~~v~~~p~~~~~~~~~~las~s~  255 (568)
                       -.|++.  +++.++++.-.++.+.++++.....   ...+....      ........|+|+|.+      +.|.++..
T Consensus        73 -EGIa~~--~~g~~~vs~E~~~~l~~~~v~~~~~---i~~~~~~~~~~~~~~~N~g~EGLA~d~~~------~~L~va~E  140 (255)
T 3qqz_A           73 -ETIEYI--GDNQFVISDERDYAIYVISLTPNSE---VKILKKIKIPLQESPTNCGFEGLAYSRQD------HTFWFFKE  140 (255)
T ss_dssp             -EEEEEC--STTEEEEEETTTTEEEEEEECTTCC---EEEEEEEECCCSSCCCSSCCEEEEEETTT------TEEEEEEE
T ss_pred             -HHeEEe--CCCEEEEEECCCCcEEEEEcCCCCe---eeeeeeeccccccccccCCcceEEEeCCC------CEEEEEEC
Confidence             567876  7776666655678899998875521   11122221      234457899999998      55555555


Q ss_pred             CC-EEEEECCC--CCcceeee-------CCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEEccccccCCCCCCCCccCcc
Q 008363          256 GG-LKFWDIRD--PFRPLWDI-------HPAPKFIYGLDWLPDPGCVI-LSFDDGAMRIVSLLKAAYDVPATGKPFAGTK  324 (568)
Q Consensus       256 d~-v~lwD~~~--~~~~~~~~-------~~h~~~i~~l~~sp~~~~l~-s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~  324 (568)
                      .. ..+|.+..  ....+..+       ..+-..+.+++++|....|+ .+.....|..+|.         .|+++    
T Consensus       141 ~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~---------~g~~~----  207 (255)
T 3qqz_A          141 KNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTL---------VGEVI----  207 (255)
T ss_dssp             SSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECT---------TCCEE----
T ss_pred             cCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcC---------CCCEE----
Confidence            43 45554431  10112211       11233568999999655554 4555788888887         35442    


Q ss_pred             ccceEEEe-cC------CCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          325 QQGLHLVN-CS------SFAIWSVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       325 ~~~l~~~~-~h------~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                        ....+. +.      -..--.|+|.++|++.++ +.-..+++|.-
T Consensus       208 --~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          208 --GEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             --EEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred             --EEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence              122232 11      124578999999985555 66666666643

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.72  E-value=0.0011  Score=69.79  Aligned_cols=147  Identities=9%  Similarity=-0.049  Sum_probs=85.7

Q ss_pred             eEEEEEccCCCCCCCCce-eEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-C-EEEEECCCCC-----------cc
Q 008363          204 TVALWKFVASDSSIDSRP-LLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-G-LKFWDIRDPF-----------RP  269 (568)
Q Consensus       204 ~I~iwd~~~~~~~~~~~~-~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-~-v~lwD~~~~~-----------~~  269 (568)
                      .|.+.|..+..    ... +..+.. .....++.++|+|      ++++.++.. . |.++|+.+..           ..
T Consensus       255 ~V~VID~~~~~----~~~~~~~Ipv-g~~PhGv~~sPDG------k~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v  323 (595)
T 1fwx_A          255 GVKVVDGRKEA----SSLFTRYIPI-ANNPHGCNMAPDK------KHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV  323 (595)
T ss_dssp             TEEEEECSGGG----CCSSEEEEEE-ESSCCCEEECTTS------SEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred             cEEEEeCcccC----CceeEEEEec-CCCceEEEEcCCC------CEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence            47777776520    022 333322 2346789999999      666666554 4 9999998541           01


Q ss_pred             eeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCE-----EEEEE
Q 008363          270 LWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAI-----WSVQV  343 (568)
Q Consensus       270 ~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V-----~~l~~  343 (568)
                      +..+. -......++|+|+| ++++.. .|++|.+||+......  ..|+..    .+.+..+..|-.+-     .++.+
T Consensus       324 ~~~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~--~~g~~~----~~vi~kidV~yqpGh~~~~~g~t~  395 (595)
T 1fwx_A          324 VAEPE-LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRA--YAGEKV----DPIKDKLDVHYQPGHLKTVMGETL  395 (595)
T ss_dssp             EECCB-CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHH--HHTCSC----CCEEEEEECSSCEEEEEETTTTST
T ss_pred             EEEcC-CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhh--hccccc----ceeEEEeecccccccceeccceEe
Confidence            22222 23446899999999 666654 4999999998641100  001111    13445666665432     12345


Q ss_pred             ecCCCEEEEEeC---CCeE----------EEEEcCCCee
Q 008363          344 SRLTGMVAYCSA---DGTV----------HRFQLTAKAV  369 (568)
Q Consensus       344 sp~~~~l~s~s~---Dg~v----------~iwd~~~~~~  369 (568)
                      +|||++|+++..   |+.+          .++|+..+++
T Consensus       396 ~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m  434 (595)
T 1fwx_A          396 DATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM  434 (595)
T ss_dssp             TCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred             CCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence            799999988863   4332          6777755443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.71  E-value=0.033  Score=56.20  Aligned_cols=198  Identities=7%  Similarity=-0.047  Sum_probs=115.1

Q ss_pred             eEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccce
Q 008363          104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPL  183 (568)
Q Consensus       104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~  183 (568)
                      ..++|.+...         .++.+-...+.|..+++........+ .                        .+-..+.+.
T Consensus       119 ~gl~~d~~~~---------~ly~~D~~~~~I~r~~~~g~~~~~~~-~------------------------~~~~~p~gl  164 (386)
T 3v65_B          119 IALDFHHRRE---------LVFWSDVTLDRILRANLNGSNVEEVV-S------------------------TGLESPGGL  164 (386)
T ss_dssp             EEEEEETTTT---------EEEEEETTTTEEEEEETTSCCEEEEE-C------------------------SSCSCCCCE
T ss_pred             EEEEEecCCC---------eEEEEeCCCCcEEEEecCCCCcEEEE-e------------------------CCCCCccEE
Confidence            3888987652         45555556778888888764322211 0                        111111123


Q ss_pred             EEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-C-EEEE
Q 008363          184 TMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-G-LKFW  261 (568)
Q Consensus       184 ~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-~-v~lw  261 (568)
                      +++|.   .+.++++-...+.|.+.++...      .....+...-.....|++.|.+     ..++++-... . |..+
T Consensus       165 avd~~---~g~lY~~d~~~~~I~~~~~dg~------~~~~l~~~~l~~P~giavdp~~-----g~ly~td~~~~~~I~r~  230 (386)
T 3v65_B          165 AVDWV---HDKLYWTDSGTSRIEVANLDGA------HRKVLLWQSLEKPRAIALHPME-----GTIYWTDWGNTPRIEAS  230 (386)
T ss_dssp             EEETT---TTEEEEEETTTTEEEECBTTSC------SCEEEECSSCSCEEEEEEETTT-----TEEEEEECSSSCEEEEE
T ss_pred             EEEeC---CCeEEEEcCCCCeEEEEeCCCC------ceEEeecCCCCCCcEEEEEcCC-----CeEEEeccCCCCEEEEE
Confidence            44433   4455566666788888887644      2222333334567999999876     1555555555 5 8888


Q ss_pred             ECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE
Q 008363          262 DIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS  340 (568)
Q Consensus       262 D~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~  340 (568)
                      ++..... .......-...+.|+|+|++..|+.+. ..+.|..+|+.         |...       ...+.........
T Consensus       231 ~~dG~~~-~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d---------G~~~-------~~~~~~~~~~P~g  293 (386)
T 3v65_B          231 SMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD---------GSHR-------KAVISQGLPHPFA  293 (386)
T ss_dssp             ETTSCSC-EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT---------SCSC-------EEEECSSCSSEEE
T ss_pred             eCCCCCc-EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC---------CCee-------EEEEECCCCCceE
Confidence            8875422 222222234468999998877777764 46789988873         2211       1122222345577


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363          341 VQVSRLTGMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       341 l~~sp~~~~l~s~s~Dg~v~iwd~~~~  367 (568)
                      |++ ..+.++++-...+.|..++..++
T Consensus       294 iav-~~~~ly~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          294 ITV-FEDSLYWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             EEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred             EEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence            777 34555566666788888885444

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.71  E-value=0.049  Score=54.10  Aligned_cols=197  Identities=7%  Similarity=-0.078  Sum_probs=115.0

Q ss_pred             eEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccce
Q 008363          104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPL  183 (568)
Q Consensus       104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~  183 (568)
                      ..++|.+...         .++.+-...+.|..+++........+ .                        .+-..  |.
T Consensus        76 ~~l~~d~~~~---------~ly~~D~~~~~I~r~~~~g~~~~~~~-~------------------------~~~~~--p~  119 (349)
T 3v64_C           76 IALDFHHRRE---------LVFWSDVTLDRILRANLNGSNVEEVV-S------------------------TGLES--PG  119 (349)
T ss_dssp             EEEEEETTTT---------EEEEEETTTTEEEEEETTSCSCEEEE-C------------------------SSCSC--CC
T ss_pred             EEEEEecccc---------EEEEEeccCCceEEEecCCCCceEEE-e------------------------CCCCC--cc
Confidence            3899997662         44445556788888888764322211 0                        11111  13


Q ss_pred             EEEEccCC-CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-C-EEE
Q 008363          184 TMEWSTSP-PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-G-LKF  260 (568)
Q Consensus       184 ~v~~s~~~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-~-v~l  260 (568)
                      .+++.  + .+.++++-...+.|.+.++...      .....+...-.....|+++|.+     ..++.+-... . |..
T Consensus       120 glavd--~~~g~ly~~d~~~~~I~~~~~dG~------~~~~l~~~~l~~P~~iavdp~~-----g~ly~td~~~~~~I~r  186 (349)
T 3v64_C          120 GLAVD--WVHDKLYWTDSGTSRIEVANLDGA------HRKVLLWQSLEKPRAIALHPME-----GTIYWTDWGNTPRIEA  186 (349)
T ss_dssp             EEEEE--TTTTEEEEEETTTTEEEEEETTSC------SCEEEECTTCSCEEEEEEETTT-----TEEEEEECSSSCEEEE
T ss_pred             EEEEe--cCCCeEEEEcCCCCeEEEEcCCCC------ceEEEEeCCCCCcceEEEecCc-----CeEEEeccCCCCEEEE
Confidence            44443  3 4456666666789999998754      2222233334567899999865     1566665555 5 888


Q ss_pred             EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEE
Q 008363          261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIW  339 (568)
Q Consensus       261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~  339 (568)
                      +++..... ...+...-...+.|+|+|++..|+.+. ..+.|..+|+.         |...       ...+...-....
T Consensus       187 ~~~dG~~~-~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d---------G~~~-------~~~~~~~~~~P~  249 (349)
T 3v64_C          187 SSMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD---------GSHR-------KAVISQGLPHPF  249 (349)
T ss_dssp             EETTSCSC-EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT---------SCSC-------EEEECSSCSSEE
T ss_pred             EeCCCCCc-EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC---------CCce-------EEEEeCCCCCce
Confidence            88875422 222222233468999999887777764 46789999983         3221       012222234456


Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363          340 SVQVSRLTGMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       340 ~l~~sp~~~~l~s~s~Dg~v~iwd~~~~  367 (568)
                      .|++ ..+.++++-...+.|..++..++
T Consensus       250 giav-~~~~ly~td~~~~~V~~~~~~~G  276 (349)
T 3v64_C          250 AITV-FEDSLYWTDWHTKSINSANKFTG  276 (349)
T ss_dssp             EEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred             EEEE-ECCEEEEecCCCCeEEEEEccCC
Confidence            7777 34455555556677887775443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.67  E-value=0.025  Score=63.06  Aligned_cols=201  Identities=10%  Similarity=-0.021  Sum_probs=122.9

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      .|+++...+++           .|-.|+.++-|..|+..++...........            +      ...-....|
T Consensus       358 ~V~~i~~d~~g-----------~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~------------~------~~~l~~~~v  408 (795)
T 4a2l_A          358 VVSCIVEDKDK-----------NLWIGTNDGGLNLYNPITQRFTSYTLQEDE------------S------ARGIGSNNI  408 (795)
T ss_dssp             SEEEEEECTTS-----------CEEEEESSSCEEEECTTTCCEEEECCC------------------------CCSCSCE
T ss_pred             eeEEEEECCCC-----------CEEEEECCCCeEEEcCCCCcEEEEecCCCC------------c------ccCCCCccE
Confidence            45566666665           466678777788898877543322100000            0      000012446


Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee-----CCCCCeeEEEEccCCCCCCCCcEEEEEcCC
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS-----ADTLPIRAVSWAPAESDSDSANVILTAGHG  256 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-----~h~~~V~~v~~~p~~~~~~~~~~las~s~d  256 (568)
                       .++...  ++|.+|..|+.++-|.+||..++      .. ..+.     .+...|.++...+++      .+.+.+. +
T Consensus       409 -~~i~~d--~~g~~lWigt~~~Gl~~~d~~~~------~~-~~~~~~~~~l~~~~v~~i~~d~~g------~lwigt~-~  471 (795)
T 4a2l_A          409 -KAVYVD--EKKSLVYIGTHAGGLSILHRNSG------QV-ENFNQRNSQLVNENVYAILPDGEG------NLWLGTL-S  471 (795)
T ss_dssp             -EEEEEE--TTTTEEEEEETTTEEEEEETTTC------CE-EEECTTTSCCSCSCEEEEEECSSS------CEEEEES-S
T ss_pred             -EEEEEc--CCCCEEEEEeCcCceeEEeCCCC------cE-EEeecCCCCcCCCeeEEEEECCCC------CEEEEec-C
Confidence             777765  67765778888788999998765      22 2222     134579999988887      6666554 6


Q ss_pred             CEEEEECCCCCcceeeeC------CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363          257 GLKFWDIRDPFRPLWDIH------PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL  330 (568)
Q Consensus       257 ~v~lwD~~~~~~~~~~~~------~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~  330 (568)
                      ||.+||..+. .......      -....|.++...++|+..+. +. +-|..||...        ++         + .
T Consensus       472 Gl~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~-~Gl~~~~~~~--------~~---------~-~  530 (795)
T 4a2l_A          472 ALVRFNPEQR-SFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG-GE-EGLSVFKQEG--------LD---------I-Q  530 (795)
T ss_dssp             CEEEEETTTT-EEEECCBCTTCCBCCCCCEEEEEECTTCCEEEE-ES-SCEEEEEEET--------TE---------E-E
T ss_pred             ceeEEeCCCC-eEEEccccccccccCCceEEEEEECCCCCEEEE-eC-CceEEEeCCC--------Ce---------E-E
Confidence            7999998764 2211111      12356899999998885554 44 4588888743        11         1 1


Q ss_pred             Ee-------cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          331 VN-------CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       331 ~~-------~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                      +.       .....|.++...++|.+.++.. . -|..||..+..+..
T Consensus       531 ~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~  576 (795)
T 4a2l_A          531 KASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKR  576 (795)
T ss_dssp             ECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEE
T ss_pred             EecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEE
Confidence            11       2345789999988887655443 3 68889987776654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.66  E-value=0.0032  Score=59.90  Aligned_cols=155  Identities=8%  Similarity=-0.068  Sum_probs=99.7

Q ss_pred             eEEEEccCCCCCEEEEEeC--CCeEEEEEccCCCCCCCCceeEEeeCCC-CCeeEEEEccCCCCCCCCcEEEEEcCCC-E
Q 008363          183 LTMEWSTSPPHDYLLAGCH--DGTVALWKFVASDSSIDSRPLLCFSADT-LPIRAVSWAPAESDSDSANVILTAGHGG-L  258 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~~~~~~las~s~d~-v  258 (568)
                      ..++|+  +++.++++.+.  ++.|.++|+.++      +.+..+.-.. .....+++..+       .++++.-.++ +
T Consensus        24 ~Gl~~~--~dg~Lyvstg~~~~s~v~~iD~~tg------~v~~~i~l~~~~fgeGi~~~g~-------~lyv~t~~~~~v   88 (266)
T 2iwa_A           24 QGLVYA--ENDTLFESTGLYGRSSVRQVALQTG------KVENIHKMDDSYFGEGLTLLNE-------KLYQVVWLKNIG   88 (266)
T ss_dssp             EEEEEC--STTEEEEEECSTTTCEEEEEETTTC------CEEEEEECCTTCCEEEEEEETT-------EEEEEETTCSEE
T ss_pred             ccEEEe--CCCeEEEECCCCCCCEEEEEECCCC------CEEEEEecCCCcceEEEEEeCC-------EEEEEEecCCEE
Confidence            678888  66655555443  579999999987      6666553222 22335555532       4666666667 9


Q ss_pred             EEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec--CC-
Q 008363          259 KFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC--SS-  335 (568)
Q Consensus       259 ~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~--h~-  335 (568)
                      .++|..+. +.+..+..-...  ...+++||..|+++..++.|.++|..+        .+..        ..+..  +. 
T Consensus        89 ~viD~~t~-~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t--------~~v~--------~~I~Vg~~~~  149 (266)
T 2iwa_A           89 FIYDRRTL-SNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHT--------FKLI--------KKHNVKYNGH  149 (266)
T ss_dssp             EEEETTTT-EEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTT--------CCEE--------EEEECEETTE
T ss_pred             EEEECCCC-cEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCC--------CcEE--------EEEEECCCCc
Confidence            99999976 666666321111  233556788888877789999999854        2221        23221  11 


Q ss_pred             --CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          336 --FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       336 --~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                        ..++.+.|. ++.+.+....++.|.+.|..++++...
T Consensus       150 p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~  187 (266)
T 2iwa_A          150 RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGW  187 (266)
T ss_dssp             ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEE
T ss_pred             ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEE
Confidence              246788888 675555555688999999999877654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.62  E-value=0.058  Score=52.66  Aligned_cols=201  Identities=8%  Similarity=-0.064  Sum_probs=115.0

Q ss_pred             eEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC---ceeeEEeccCCccCCCCceEEEeecceecccccCCcCc
Q 008363          104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL---RTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQS  180 (568)
Q Consensus       104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~---~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~  180 (568)
                      ..++|.+.+.         .++.+-...+.|..+++...   .....+.                         ......
T Consensus        33 ~g~~~d~~~~---------~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~-------------------------~~~~~~   78 (316)
T 1ijq_A           33 VALDTEVASN---------RIYWSDLSQRMICSTQLDRAHGVSSYDTVI-------------------------SRDIQA   78 (316)
T ss_dssp             EEEEEETTTT---------EEEEEETTTTEEEEEEC--------CEEEE-------------------------CSSCSC
T ss_pred             EEEEEEeCCC---------EEEEEECCCCcEEEEECCCCCCCcccEEEE-------------------------eCCCCC
Confidence            3899998762         45555556788999988751   1111110                         111111


Q ss_pred             cceEEEEccCC-CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-C-
Q 008363          181 IPLTMEWSTSP-PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-G-  257 (568)
Q Consensus       181 V~~~v~~s~~~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-~-  257 (568)
                       |..+++.  + .+.++++-...+.|.++++...      .....+.........|+++|.+     ..++++.... + 
T Consensus        79 -p~glavd--~~~~~ly~~d~~~~~I~~~~~~g~------~~~~~~~~~~~~P~~iavdp~~-----g~ly~~d~~~~~~  144 (316)
T 1ijq_A           79 -PDGLAVD--WIHSNIYWTDSVLGTVSVADTKGV------KRKTLFRENGSKPRAIVVDPVH-----GFMYWTDWGTPAK  144 (316)
T ss_dssp             -CCEEEEE--TTTTEEEEEETTTTEEEEEETTSS------SEEEEEECTTCCEEEEEEETTT-----TEEEEEECSSSCE
T ss_pred             -cCEEEEe--ecCCeEEEEECCCCEEEEEeCCCC------ceEEEEECCCCCcceEEeCCCC-----CEEEEEccCCCCe
Confidence             2445544  3 3445566667889999998743      2222233334567899999865     1555555443 5 


Q ss_pred             EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCC
Q 008363          258 LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSF  336 (568)
Q Consensus       258 v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~  336 (568)
                      |...++....... .....-...+.|+|+|++..|+.+. ..+.|..+|+.         |...     ..+......-.
T Consensus       145 I~~~~~dG~~~~~-~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d---------g~~~-----~~~~~~~~~~~  209 (316)
T 1ijq_A          145 IKKGGLNGVDIYS-LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN---------GGNR-----KTILEDEKRLA  209 (316)
T ss_dssp             EEEEETTSCCEEE-EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT---------SCSC-----EEEEECTTTTS
T ss_pred             EEEEcCCCCCeEE-EEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecC---------CCce-----EEEeecCCccC
Confidence            8888886542222 2222234568999999888777764 46789999983         3221     11111111223


Q ss_pred             CEEEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363          337 AIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       337 ~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~  368 (568)
                      ....|++. .+.++++-...+.|..++..++.
T Consensus       210 ~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          210 HPFSLAVF-EDKVFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             SEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             CcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence            45677775 35555666667888888875553

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.56  E-value=0.011  Score=57.85  Aligned_cols=149  Identities=7%  Similarity=-0.028  Sum_probs=88.3

Q ss_pred             eEEEEccCC-CCCEEEEEeC-----------------CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCC
Q 008363          183 LTMEWSTSP-PHDYLLAGCH-----------------DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDS  244 (568)
Q Consensus       183 ~~v~~s~~~-~g~~l~sgs~-----------------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~  244 (568)
                      ..+++.  + +|.++++-..                 +|.|..||..++      ...... ........|+|++++   
T Consensus       129 ~~i~~d--~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~------~~~~~~-~~~~~p~gia~~~dg---  196 (322)
T 2fp8_A          129 YAVTVD--QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK------ETTLLL-KELHVPGGAEVSADS---  196 (322)
T ss_dssp             EEEEEC--TTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT------EEEEEE-EEESCCCEEEECTTS---
T ss_pred             ceEEEe--cCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC------EEEEec-cCCccCcceEECCCC---
Confidence            677777  7 7776665432                 367888887644      222111 112345789999998   


Q ss_pred             CCCcEE-EEEcCCC-EEEEECCCCCc-ceeeeCCCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEEcccccc
Q 008363          245 DSANVI-LTAGHGG-LKFWDIRDPFR-PLWDIHPAPKFIYGLDWLPDPGCVILSFD----------DGAMRIVSLLKAAY  311 (568)
Q Consensus       245 ~~~~~l-as~s~d~-v~lwD~~~~~~-~~~~~~~h~~~i~~l~~sp~~~~l~s~~~----------dg~I~lwd~~~~~~  311 (568)
                         .+| ++-...+ |..||+..... ....+....+ ...+++.++|++.++...          .+.|..+|.     
T Consensus       197 ---~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-----  267 (322)
T 2fp8_A          197 ---SFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-----  267 (322)
T ss_dssp             ---SEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-----
T ss_pred             ---CEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-----
Confidence               644 4445555 99999875321 1111111223 788999999986666544          356777775     


Q ss_pred             CCCCCCCCccCccccceEEEecC----CCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          312 DVPATGKPFAGTKQQGLHLVNCS----SFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       312 ~~~~~g~~~~~~~~~~l~~~~~h----~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                          .|+.+        ..+...    -..++++++ .++.++++....+.|.++++.
T Consensus       268 ----~G~~~--------~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          268 ----FGNIL--------EVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             ----TSCEE--------EEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred             ----CCCEE--------EEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence                24332        344322    134566666 356666666678889999874

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.51  E-value=0.0046  Score=67.40  Aligned_cols=71  Identities=7%  Similarity=0.033  Sum_probs=44.2

Q ss_pred             eEEEEccCCCCCEEEEEeC-CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc-CC----
Q 008363          183 LTMEWSTSPPHDYLLAGCH-DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG-HG----  256 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s-~d----  256 (568)
                      .++++.  .++.+++.|+. +..+.+||..+..+    ..+..+.. ...-.++++.+++      ++++.|+ .+    
T Consensus       246 ~~~~~~--~~g~lyv~GG~~~~~v~~yd~~t~~W----~~~~~~~~-~R~~~s~~~~~dg------~iyv~GG~~~~~~~  312 (656)
T 1k3i_A          246 PGISMD--GNGQIVVTGGNDAKKTSLYDSSSDSW----IPGPDMQV-ARGYQSSATMSDG------RVFTIGGSWSGGVF  312 (656)
T ss_dssp             CEEEEC--TTSCEEEECSSSTTCEEEEEGGGTEE----EECCCCSS-CCSSCEEEECTTS------CEEEECCCCCSSSC
T ss_pred             ccccCC--CCCCEEEeCCCCCCceEEecCcCCce----eECCCCCc-cccccceEEecCC------eEEEEeCcccCCcc
Confidence            345655  67889999884 56899999986633    22211211 1112345566677      7888887 32    


Q ss_pred             -C-EEEEECCCC
Q 008363          257 -G-LKFWDIRDP  266 (568)
Q Consensus       257 -~-v~lwD~~~~  266 (568)
                       . +.+||..+.
T Consensus       313 ~~~~e~yd~~t~  324 (656)
T 1k3i_A          313 EKNGEVYSPSSK  324 (656)
T ss_dssp             CCCEEEEETTTT
T ss_pred             cccceEeCCCCC
Confidence             3 889998764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.46  E-value=0.015  Score=63.34  Aligned_cols=159  Identities=14%  Similarity=0.172  Sum_probs=96.4

Q ss_pred             EEEEccCCCCCEEEEEeCCCe-------------------EEEEEccCCCCCCCCceeEEeeC--CC-------CCeeEE
Q 008363          184 TMEWSTSPPHDYLLAGCHDGT-------------------VALWKFVASDSSIDSRPLLCFSA--DT-------LPIRAV  235 (568)
Q Consensus       184 ~v~~s~~~~g~~l~sgs~Dg~-------------------I~iwd~~~~~~~~~~~~~~~~~~--h~-------~~V~~v  235 (568)
                      .+++.  +...+++.++.++.                   |..+|..++      +.+..+..  |.       .++...
T Consensus       234 ~~a~d--~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG------~~~W~~~~~~~~~wd~~~~~~~~~~  305 (668)
T 1kv9_A          234 SMAYD--PELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG------KLAWHYQVTPGDSWDFTATQQITLA  305 (668)
T ss_dssp             CEEEE--TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC------CEEEEEESSTTCCSCCCCCSCEEEE
T ss_pred             ceEEc--CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCC------ceeeEeecCCCccccccCCCCcEEE
Confidence            45665  66678888887764                   888998877      55555543  32       222222


Q ss_pred             EEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCC------------CCe----------------------
Q 008363          236 SWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAP------------KFI----------------------  280 (568)
Q Consensus       236 ~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~------------~~i----------------------  280 (568)
                      .+..++.   ...+++.++.++ ++++|..++ +.+.......            .++                      
T Consensus       306 d~~~~G~---~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~  381 (668)
T 1kv9_A          306 ELNIDGK---PRKVLMQAPKNGFFYVLDRTNG-KLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH  381 (668)
T ss_dssp             EEEETTE---EEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred             EeccCCc---EEEEEEEECCCCEEEEEECCCC-CEeccccccccccccccccccCCccccccccccCCeeEECCCCcccc
Confidence            2333440   012688888888 999999888 4442111000            000                      


Q ss_pred             --EEEEEcCCCCEEEEEe------------------------------------CCCcEEEEEccccccCCCCCCCCccC
Q 008363          281 --YGLDWLPDPGCVILSF------------------------------------DDGAMRIVSLLKAAYDVPATGKPFAG  322 (568)
Q Consensus       281 --~~l~~sp~~~~l~s~~------------------------------------~dg~I~lwd~~~~~~~~~~~g~~~~~  322 (568)
                        ..++++|+...+++..                                    .+|.|+.||+.        +|+.++ 
T Consensus       382 ~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~--------tG~~~W-  452 (668)
T 1kv9_A          382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPV--------KQKAAW-  452 (668)
T ss_dssp             CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETT--------TTEEEE-
T ss_pred             CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCC--------CCcEEE-
Confidence              1267888777666521                                    23778888883        465432 


Q ss_pred             ccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          323 TKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       323 ~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                             .+..+ .+++...+...+.+|++++.||.|+.||..+++..-
T Consensus       453 -------~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~  493 (668)
T 1kv9_A          453 -------KVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW  493 (668)
T ss_dssp             -------EEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             -------EccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhhe
Confidence                   33322 233334455578899999999999999999887654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.45  E-value=0.0093  Score=56.16  Aligned_cols=154  Identities=10%  Similarity=0.060  Sum_probs=97.9

Q ss_pred             eEEEEccCCCCCEEEEEeCCC--eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDG--TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LK  259 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~  259 (568)
                      ..|.|+   ++.++.+.+.+|  .|+++|+.++      +.+..+.-. .........+.+     ..+++..-.++ +.
T Consensus        46 qGL~~~---~~~LyestG~~g~S~v~~vD~~Tg------kv~~~~~l~-~~~FgeGit~~g-----~~ly~ltw~~~~v~  110 (262)
T 3nol_A           46 EGFFYR---NGYFYESTGLNGRSSIRKVDIESG------KTLQQIELG-KRYFGEGISDWK-----DKIVGLTWKNGLGF  110 (262)
T ss_dssp             EEEEEE---TTEEEEEEEETTEEEEEEECTTTC------CEEEEEECC-TTCCEEEEEEET-----TEEEEEESSSSEEE
T ss_pred             ceEEEE---CCEEEEECCCCCCceEEEEECCCC------cEEEEEecC-CccceeEEEEeC-----CEEEEEEeeCCEEE
Confidence            567777   567777777776  8999999987      666655432 233332223333     14556655667 99


Q ss_pred             EEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec--CC--
Q 008363          260 FWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC--SS--  335 (568)
Q Consensus       260 lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~--h~--  335 (568)
                      +||..+. +.+..+....   ....+++++..|+.+..++.|.++|..+        .+.+        ..+..  ..  
T Consensus       111 v~D~~t~-~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T--------~~v~--------~~I~V~~~g~~  170 (262)
T 3nol_A          111 VWNIRNL-RQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPES--------LTPV--------RTITVTAHGEE  170 (262)
T ss_dssp             EEETTTC-CEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTT--------CSEE--------EEEECEETTEE
T ss_pred             EEECccC-cEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCC--------CeEE--------EEEEeccCCcc
Confidence            9999987 6665554211   2123335688888876678899999854        3222        23222  11  


Q ss_pred             -CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          336 -FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       336 -~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                       ..++.+.|. +|.+.+..-.+..|.+.|..++++...
T Consensus       171 ~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~  207 (262)
T 3nol_A          171 LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGI  207 (262)
T ss_dssp             CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEE
T ss_pred             ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEE
Confidence             335567776 666555555688999999999987654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.44  E-value=0.0036  Score=58.98  Aligned_cols=151  Identities=12%  Similarity=0.003  Sum_probs=99.6

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCee--EEEEccCCCCCCCCcEEEEEcCCC-EE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIR--AVSWAPAESDSDSANVILTAGHGG-LK  259 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~--~v~~~p~~~~~~~~~~las~s~d~-v~  259 (568)
                      ..|.|+   ++.++++.+.+|.|+++|+.++      +.+..+ - .....  .+++..+       .+++..-.++ +.
T Consensus        58 qGL~~~---~~~Ly~stG~~g~v~~iD~~Tg------kv~~~~-l-~~~~FgeGit~~g~-------~Ly~ltw~~~~v~  119 (268)
T 3nok_A           58 QGLVFH---QGHFFESTGHQGTLRQLSLESA------QPVWME-R-LGNIFAEGLASDGE-------RLYQLTWTEGLLF  119 (268)
T ss_dssp             EEEEEE---TTEEEEEETTTTEEEECCSSCS------SCSEEE-E-CTTCCEEEEEECSS-------CEEEEESSSCEEE
T ss_pred             ceEEEE---CCEEEEEcCCCCEEEEEECCCC------cEEeEE-C-CCCcceeEEEEeCC-------EEEEEEccCCEEE
Confidence            467777   4678888889999999999988      444443 1 22333  3555443       5666666677 99


Q ss_pred             EEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec--CC--
Q 008363          260 FWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC--SS--  335 (568)
Q Consensus       260 lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~--h~--  335 (568)
                      +||..+. +.+.++..- ..-..++  +++..|+.+..++.|.++|..+        .+.+        ..+..  +.  
T Consensus       120 V~D~~Tl-~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T--------~~v~--------~~I~V~~~g~~  179 (268)
T 3nok_A          120 TWSGMPP-QRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDG--------FALV--------GAVQVKLRGQP  179 (268)
T ss_dssp             EEETTTT-EEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTT--------CCEE--------EEEECEETTEE
T ss_pred             EEECCcC-cEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCC--------CeEE--------EEEEeCCCCcc
Confidence            9999987 666666432 2223444  5688888887789999999854        3222        23221  22  


Q ss_pred             -CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          336 -FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       336 -~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                       ..++.+.|. +|.+.+..-.+..|.+.|..++++...
T Consensus       180 v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~  216 (268)
T 3nok_A          180 VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGV  216 (268)
T ss_dssp             CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEE
T ss_pred             cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEE
Confidence             245677887 666555555688999999999887653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.43  E-value=0.1  Score=50.81  Aligned_cols=157  Identities=8%  Similarity=-0.010  Sum_probs=95.2

Q ss_pred             eEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363          183 LTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF  260 (568)
Q Consensus       183 ~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l  260 (568)
                      ..++|.  +.+. ++++-...+.|..+++......  ......+...-.....|++.+.+     .+++++-...+ |.+
T Consensus        33 ~g~~~d--~~~~~ly~~D~~~~~I~~~~~~g~~~~--~~~~~~~~~~~~~p~glavd~~~-----~~ly~~d~~~~~I~~  103 (316)
T 1ijq_A           33 VALDTE--VASNRIYWSDLSQRMICSTQLDRAHGV--SSYDTVISRDIQAPDGLAVDWIH-----SNIYWTDSVLGTVSV  103 (316)
T ss_dssp             EEEEEE--TTTTEEEEEETTTTEEEEEEC----------CEEEECSSCSCCCEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred             EEEEEE--eCCCEEEEEECCCCcEEEEECCCCCCC--cccEEEEeCCCCCcCEEEEeecC-----CeEEEEECCCCEEEE
Confidence            789998  5444 5555566789999998751000  01222232233456889998754     15666656666 999


Q ss_pred             EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCC--CcEEEEEccccccCCCCCCCCccCccccceEEE-ecCCCC
Q 008363          261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDD--GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV-NCSSFA  337 (568)
Q Consensus       261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d--g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~-~~h~~~  337 (568)
                      .|+... .....+.........++++|.+..|+.+...  +.|..+++.         |...        ..+ ...-..
T Consensus       104 ~~~~g~-~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d---------G~~~--------~~~~~~~~~~  165 (316)
T 1ijq_A          104 ADTKGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN---------GVDI--------YSLVTENIQW  165 (316)
T ss_dssp             EETTSS-SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT---------SCCE--------EEEECSSCSC
T ss_pred             EeCCCC-ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC---------CCCe--------EEEEECCCCC
Confidence            998754 2222222233457899999977777666542  678888872         3321        222 122345


Q ss_pred             EEEEEEecCCCEEEEEe-CCCeEEEEEcCC
Q 008363          338 IWSVQVSRLTGMVAYCS-ADGTVHRFQLTA  366 (568)
Q Consensus       338 V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~  366 (568)
                      ...|+|++++..|..+. ..+.|..+++..
T Consensus       166 P~gla~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          166 PNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence            68999999876665554 567899999864

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.40  E-value=0.025  Score=57.98  Aligned_cols=150  Identities=9%  Similarity=0.132  Sum_probs=90.2

Q ss_pred             EEEEcc-CCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccce
Q 008363          105 DVKWKP-YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPL  183 (568)
Q Consensus       105 ~v~~sp-~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~  183 (568)
                      .|+|+| ++          +.|.++...+.|+.+|+..+......                           ..... |.
T Consensus       141 ~lavdp~~~----------g~Lyv~d~~~~I~~id~~~~~v~~~~---------------------------~~~~~-P~  182 (430)
T 3tc9_A          141 WLSFDPKNH----------NHLYLVGEQHPTRLIDFEKEYVSTVY---------------------------SGLSK-VR  182 (430)
T ss_dssp             EEEEETTEE----------EEEEEEEBTEEEEEEETTTTEEEEEE---------------------------CCCSC-EE
T ss_pred             EEEECCCCC----------CeEEEEeCCCcEEEEECCCCEEEEEe---------------------------cCCCC-cc
Confidence            788887 34          45555555578888888775433221                           11122 48


Q ss_pred             EEEEccCCCCCEEEEEeC-CC----eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEcc-CCCCCCCCcEEEEEcCCC
Q 008363          184 TMEWSTSPPHDYLLAGCH-DG----TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAP-AESDSDSANVILTAGHGG  257 (568)
Q Consensus       184 ~v~~s~~~~g~~l~sgs~-Dg----~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p-~~~~~~~~~~las~s~d~  257 (568)
                      .|+|+  ++|++|+++.. ++    .+.+++.. +..    .....+.. ......++++| ++      .++++-..++
T Consensus       183 ~ia~d--~~G~~lyvad~~~~~~~~~v~~~~~~-g~~----~~~~~l~~-~~~p~giavdp~~g------~lyv~d~~~~  248 (430)
T 3tc9_A          183 TICWT--HEADSMIITNDQNNNDRPNNYILTRE-SGF----KVITELTK-GQNCNGAETHPING------ELYFNSWNAG  248 (430)
T ss_dssp             EEEEC--TTSSEEEEEECCSCTTSEEEEEEEGG-GTS----CSEEEEEE-CSSCCCEEECTTTC------CEEEEETTTT
T ss_pred             eEEEe--CCCCEEEEEeCCCCcccceEEEEeCC-Cce----eeeeeecc-CCCceEEEEeCCCC------EEEEEECCCC
Confidence            89988  88885655554 22    23334433 211    11122222 23467889999 65      6777666666


Q ss_pred             -EEEEECCCCCc-ceeeeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcc
Q 008363          258 -LKFWDIRDPFR-PLWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRIVSLL  307 (568)
Q Consensus       258 -v~lwD~~~~~~-~~~~~~~h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~  307 (568)
                       |..+|...... .+.... .....+.|+|+|++++|+.+ ...+.|..++..
T Consensus       249 ~V~~~~~~~~~~~~~~~~~-~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          249 QVFRYDFTTQETTPLFTIQ-DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEEEEETTTTEEEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEECCCCcEEEEEEcC-CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence             99999886522 222221 12346899999999966665 457889998874

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.40  E-value=0.11  Score=50.77  Aligned_cols=201  Identities=10%  Similarity=-0.034  Sum_probs=116.8

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      .+ ++.|.+...         .++.+-...+.|..+++........+..                        .+-. . 
T Consensus        37 ~~-~ld~d~~~~---------~lyw~D~~~~~I~r~~~~g~~~~~~~~~------------------------~~l~-~-   80 (318)
T 3sov_A           37 AA-AVDFVFSHG---------LIYWSDVSEEAIKRTEFNKTESVQNVVV------------------------SGLL-S-   80 (318)
T ss_dssp             EE-EEEEEGGGT---------EEEEEETTTTEEEEEETTSSSCCCEEEE------------------------ECCS-C-
T ss_pred             cE-EEEEEeCCC---------EEEEEECCCCcEEEEEccCCCceEEEEc------------------------CCCC-C-
Confidence            44 899998652         4555556678888888876432111100                        0101 1 


Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-CC-EE
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-GG-LK  259 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~-v~  259 (568)
                      |..+++.+. .+.++++-...+.|.++++...      .....+.........|++.|.+     ..++.+-.. .. |.
T Consensus        81 p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~------~~~~l~~~~~~~P~giavdp~~-----g~ly~td~~~~~~I~  148 (318)
T 3sov_A           81 PDGLACDWL-GEKLYWTDSETNRIEVSNLDGS------LRKVLFWQELDQPRAIALDPSS-----GFMYWTDWGEVPKIE  148 (318)
T ss_dssp             CCEEEEETT-TTEEEEEETTTTEEEEEETTSC------SCEEEECSSCSSEEEEEEEGGG-----TEEEEEECSSSCEEE
T ss_pred             ccEEEEEcC-CCeEEEEECCCCEEEEEECCCC------cEEEEEeCCCCCccEEEEeCCC-----CEEEEEecCCCCEEE
Confidence            134444311 4556666667789999998754      2222232344567899999865     145555422 35 88


Q ss_pred             EEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccceEEE-ecCCCC
Q 008363          260 FWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV-NCSSFA  337 (568)
Q Consensus       260 lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~-~~h~~~  337 (568)
                      ..++...... ..+...-...+.|+|+|++..|+.+. ..+.|..+|+.         |...        ..+ .+.-..
T Consensus       149 r~~~dG~~~~-~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d---------G~~~--------~~~~~~~~~~  210 (318)
T 3sov_A          149 RAGMDGSSRF-IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD---------GTNR--------QAVVKGSLPH  210 (318)
T ss_dssp             EEETTSCSCE-EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT---------SCSC--------EEEECSCCSC
T ss_pred             EEEcCCCCeE-EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCC---------CCce--------EEEecCCCCC
Confidence            8888754222 22222233458999999877777764 47889999983         3221        122 223344


Q ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363          338 IWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV  369 (568)
Q Consensus       338 V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~  369 (568)
                      ...+++.. +.++.+-...+.|..++..++..
T Consensus       211 P~glav~~-~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          211 PFALTLFE-DILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             EEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred             ceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence            56777753 45555555678888888865543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.40  E-value=0.074  Score=59.15  Aligned_cols=203  Identities=9%  Similarity=0.047  Sum_probs=123.8

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      .|+++...+++           .|..|+.+ -|.+|+..++...........                   ...-....|
T Consensus       264 ~i~~i~~d~~g-----------~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~-------------------~~~l~~~~i  312 (795)
T 4a2l_A          264 YIRSLAMDSQN-----------RLWIGTFN-DLNIYHEGTDSFASYSSNPVE-------------------NGSLSQRSV  312 (795)
T ss_dssp             BEEEEEECTTS-----------CEEEEESS-CEEEEETTTTEEEEECCCTTS-------------------TTSCSSSCE
T ss_pred             eEEEEEEcCCC-----------CEEEEeCC-hhheEcCCCCeEEEEecCCCC-------------------CCCCCCCcE
Confidence            45577776666           35556655 488888877543321100000                   001123456


Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC-------CCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA-------DTLPIRAVSWAPAESDSDSANVILTAG  254 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-------h~~~V~~v~~~p~~~~~~~~~~las~s  254 (568)
                       .++...  ++| .|-.|+.++-|..|+.....       +..+..       ....|.++...+++      .+.+...
T Consensus       313 -~~i~~D--~~g-~lWigt~~~Gl~~~~~~~~~-------~~~~~~~~~~~~l~~~~V~~i~~d~~g------~lWiGt~  375 (795)
T 4a2l_A          313 -RSIFMD--SQG-GMWLGTYFGGLNYYHPIRNR-------FKNIRNIPYKNSLSDNVVSCIVEDKDK------NLWIGTN  375 (795)
T ss_dssp             -EEEEEC--TTS-CEEEEESSSCEEEECGGGGS-------SEEECCCTTSSSCSCSSEEEEEECTTS------CEEEEES
T ss_pred             -EEEEEe--CCc-CEEEEECCCCeEEeCCCccc-------ceEEcCCCCCCCCCCCeeEEEEECCCC------CEEEEEC
Confidence             788766  666 56778888889999876441       122211       23469999988887      5665444


Q ss_pred             CCCEEEEECCCCCcceeeeC-------CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccc
Q 008363          255 HGGLKFWDIRDPFRPLWDIH-------PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQG  327 (568)
Q Consensus       255 ~d~v~lwD~~~~~~~~~~~~-------~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~  327 (568)
                      .+||..||..+..-......       -....|.+++..++++.|.+|+.++-|.+||...        ++.        
T Consensus       376 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~--------~~~--------  439 (795)
T 4a2l_A          376 DGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS--------GQV--------  439 (795)
T ss_dssp             SSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT--------CCE--------
T ss_pred             CCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC--------CcE--------
Confidence            44699999876521111110       1135689999988888677788877799999843        322        


Q ss_pred             eEEEe-----cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          328 LHLVN-----CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       328 l~~~~-----~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                       ..+.     .+...|.++...+++.+.+.. . +.|.+|+..++.+..
T Consensus       440 -~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~  485 (795)
T 4a2l_A          440 -ENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTT  485 (795)
T ss_dssp             -EEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEE
T ss_pred             -EEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEE
Confidence             1222     134578999988877755554 3 458889988776654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.35  E-value=0.16  Score=51.30  Aligned_cols=150  Identities=9%  Similarity=-0.053  Sum_probs=90.0

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-CC-EEEEECCCCCcc
Q 008363          192 PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-GG-LKFWDIRDPFRP  269 (568)
Q Consensus       192 ~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~-v~lwD~~~~~~~  269 (568)
                      .+.++++-...+.|.+.++...      .....+...-.....|++.|.+     ..++.+-.. .. |...++.... .
T Consensus       170 ~~~lY~~d~~~~~I~~~~~~g~------~~~~l~~~~~~~P~~iavdp~~-----g~ly~td~~~~~~I~~~~~dG~~-~  237 (400)
T 3p5b_L          170 HSNIYWTDSVLGTVSVADTKGV------KRKTLFRENGSKPRAIVVDPVH-----GFMYWTDWGTPAKIKKGGLNGVD-I  237 (400)
T ss_dssp             TTEEEEEETTTTEEEEECTTTC------SEEEEEECSSCCEEEEEEETTT-----TEEEEEECSSSCCEEEEETTSCS-C
T ss_pred             CCceEEEECCCCeEEEEeCCCC------ceEEEEeCCCCCcceEEEeccc-----CeEEEEeCCCCCEEEEEeCCCCc-c
Confidence            4556666667889999988754      2333333344558899999965     145555433 24 9989987542 2


Q ss_pred             eeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCC
Q 008363          270 LWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG  348 (568)
Q Consensus       270 ~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~  348 (568)
                      ...+...-...+.|+++|++..|+.+. ..+.|..+|+.         |...     ..+......-....+|++. .+.
T Consensus       238 ~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d---------G~~~-----~~~~~~~~~l~~P~gl~v~-~~~  302 (400)
T 3p5b_L          238 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN---------GGNR-----KTILEDEKRLAHPFSLAVF-EDK  302 (400)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT---------SCCC-----EEEEECSSTTSSEEEEEEE-TTE
T ss_pred             EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC---------CCcc-----EEEEeCCCCCCCCEEEEEe-CCE
Confidence            222222234568999999888887774 46789999983         3221     1111111122344567763 345


Q ss_pred             EEEEEeCCCeEEEEEcCCCe
Q 008363          349 MVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       349 ~l~s~s~Dg~v~iwd~~~~~  368 (568)
                      ++++-...+.|..++..++.
T Consensus       303 lywtd~~~~~V~~~~~~~G~  322 (400)
T 3p5b_L          303 VFWTDIINEAIFSANRLTGS  322 (400)
T ss_dssp             EEEEESSSCSEEEEESSSCC
T ss_pred             EEEecCCCCeEEEEEcCCCC
Confidence            55555566788888865553

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.33  E-value=0.039  Score=56.61  Aligned_cols=150  Identities=9%  Similarity=0.061  Sum_probs=87.3

Q ss_pred             EEEEccC--CCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          105 DVKWKPY--NAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       105 ~v~~sp~--~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      .|+|.|+  .          +.|..+...+.|+.++..++......                           +.... |
T Consensus       143 gvavd~~s~~----------g~Lyv~D~~~~I~~id~~~g~v~~~~---------------------------~~~~~-P  184 (433)
T 4hw6_A          143 RMMFDPNSNY----------DDLYWVGQRDAFRHVDFVNQYVDIKT---------------------------TNIGQ-C  184 (433)
T ss_dssp             EEEECTTTTT----------CEEEEECBTSCEEEEETTTTEEEEEC---------------------------CCCSC-E
T ss_pred             eEEEccccCC----------CEEEEEeCCCCEEEEECCCCEEEEee---------------------------cCCCC-c
Confidence            7889985  3          35555544488999998775543221                           11122 4


Q ss_pred             eEEEEccCCCCCEEEEEeCC---Ce-EEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEcc-CCCCCCCCcEEEEEcCCC
Q 008363          183 LTMEWSTSPPHDYLLAGCHD---GT-VALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAP-AESDSDSANVILTAGHGG  257 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~D---g~-I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p-~~~~~~~~~~las~s~d~  257 (568)
                      ..|+|+  ++|+++++....   .. +...+.... .    .....+. .-.....++++| .+      .++++-..++
T Consensus       185 ~giavd--~dG~lyVad~~~~~~~~gv~~~~~~~~-~----~~~~~~~-~~~~P~giavd~~~G------~lyv~d~~~~  250 (433)
T 4hw6_A          185 ADVNFT--LNGDMVVVDDQSSDTNTGIYLFTRASG-F----TERLSLC-NARGAKTCAVHPQNG------KIYYTRYHHA  250 (433)
T ss_dssp             EEEEEC--TTCCEEEEECCSCTTSEEEEEECGGGT-T----CCEEEEE-ECSSBCCCEECTTTC------CEEECBTTCS
T ss_pred             cEEEEC--CCCCEEEEcCCCCcccceEEEEECCCC-e----ecccccc-ccCCCCEEEEeCCCC------eEEEEECCCC
Confidence            889988  888844444321   12 333333221 1    1011221 234467789999 65      6666666666


Q ss_pred             -EEEEECCCCCc--ceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcc
Q 008363          258 -LKFWDIRDPFR--PLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLL  307 (568)
Q Consensus       258 -v~lwD~~~~~~--~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~  307 (568)
                       |+.+|..++..  .+... +....-..|+|+|++++|+.+. ..+.|+.+++.
T Consensus       251 ~V~~~d~~~g~~~~~~~~~-~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          251 MISSYDPATGTLTEEEVMM-DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             EEEEECTTTCCEEEEEEEC-SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             EEEEEECCCCeEEEEEecc-CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence             99999875522  12111 1122235799999999666664 47889998874

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.32  E-value=0.074  Score=53.58  Aligned_cols=154  Identities=6%  Similarity=0.013  Sum_probs=96.8

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW  261 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw  261 (568)
                      ..++|.+. ++.++++-...+.|..+++...      .....+.........|++.+.+     ..++++-.... |.+.
T Consensus       119 ~gl~~d~~-~~~ly~~D~~~~~I~r~~~~g~------~~~~~~~~~~~~p~glavd~~~-----g~lY~~d~~~~~I~~~  186 (386)
T 3v65_B          119 IALDFHHR-RELVFWSDVTLDRILRANLNGS------NVEEVVSTGLESPGGLAVDWVH-----DKLYWTDSGTSRIEVA  186 (386)
T ss_dssp             EEEEEETT-TTEEEEEETTTTEEEEEETTSC------CEEEEECSSCSCCCCEEEETTT-----TEEEEEETTTTEEEEC
T ss_pred             EEEEEecC-CCeEEEEeCCCCcEEEEecCCC------CcEEEEeCCCCCccEEEEEeCC-----CeEEEEcCCCCeEEEE
Confidence            78999832 3345555556788999998754      2323333333456788998755     15666666566 9999


Q ss_pred             ECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-C-CcEEEEEccccccCCCCCCCCccCccccceEEE-ecCCCCE
Q 008363          262 DIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-D-GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV-NCSSFAI  338 (568)
Q Consensus       262 D~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-d-g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~-~~h~~~V  338 (568)
                      ++... .....+...-.....|+++|.+..|+.+.. . +.|+.+++.         |...        ..+ ...-...
T Consensus       187 ~~dg~-~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d---------G~~~--------~~~~~~~~~~P  248 (386)
T 3v65_B          187 NLDGA-HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD---------GSGR--------RIIADTHLFWP  248 (386)
T ss_dssp             BTTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT---------SCSC--------EEEECSSCSCE
T ss_pred             eCCCC-ceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC---------CCCc--------EEEEECCCCCe
Confidence            98755 222233333345789999998877777644 4 678888873         3222        122 2223456


Q ss_pred             EEEEEecCCCEEEEE-eCCCeEEEEEcCC
Q 008363          339 WSVQVSRLTGMVAYC-SADGTVHRFQLTA  366 (568)
Q Consensus       339 ~~l~~sp~~~~l~s~-s~Dg~v~iwd~~~  366 (568)
                      ..|+|+|++..|..+ +..+.|..+++..
T Consensus       249 nGlavd~~~~~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          249 NGLTIDYAGRRMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred             eeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            899999876555554 4567888888864

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.30  E-value=0.044  Score=60.90  Aligned_cols=155  Identities=12%  Similarity=0.062  Sum_probs=96.3

Q ss_pred             CccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee---CCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363          179 QSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS---ADTLPIRAVSWAPAESDSDSANVILTAGH  255 (568)
Q Consensus       179 ~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~---~h~~~V~~v~~~p~~~~~~~~~~las~s~  255 (568)
                      ..| .++...  ++| .|..|+.++-|..++..++      . +..+.   .....|.++...+++      .+.+.+. 
T Consensus       407 ~~v-~~i~~d--~~g-~lWigt~~~Gl~~~~~~~~------~-~~~~~~~~~~~~~v~~i~~d~~g------~lwigt~-  468 (781)
T 3v9f_A          407 NSV-LCSLKD--SEG-NLWFGTYLGNISYYNTRLK------K-FQIIELEKNELLDVRVFYEDKNK------KIWIGTH-  468 (781)
T ss_dssp             SBE-EEEEEC--TTS-CEEEEETTEEEEEECSSSC------E-EEECCSTTTCCCCEEEEEECTTS------EEEEEET-
T ss_pred             cce-EEEEEC--CCC-CEEEEeccCCEEEEcCCCC------c-EEEeccCCCCCCeEEEEEECCCC------CEEEEEC-
Confidence            456 777755  565 5566777777888887654      2 22221   134679999988887      5555444 


Q ss_pred             CCEEEEECCCCCcceeeeCCC-----CCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363          256 GGLKFWDIRDPFRPLWDIHPA-----PKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL  330 (568)
Q Consensus       256 d~v~lwD~~~~~~~~~~~~~h-----~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~  330 (568)
                      ++|..||..+.. ........     ...|.++...++|.. ..|+.++-|..||...        ++         +..
T Consensus       469 ~Gl~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~--------~~---------~~~  529 (781)
T 3v9f_A          469 AGVFVIDLASKK-VIHHYDTSNSQLLENFVRSIAQDSEGRF-WIGTFGGGVGIYTPDM--------QL---------VRK  529 (781)
T ss_dssp             TEEEEEESSSSS-CCEEECTTTSSCSCSCEEEEEECTTCCE-EEEESSSCEEEECTTC--------CE---------EEE
T ss_pred             CceEEEeCCCCe-EEecccCcccccccceeEEEEEcCCCCE-EEEEcCCCEEEEeCCC--------Ce---------EEE
Confidence            669999987652 22111111     356899999998874 4555544477788732        21         122


Q ss_pred             Eec----CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          331 VNC----SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       331 ~~~----h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                      +..    ....|.++...++|.+.++.. +|.|..||..+..+..
T Consensus       530 ~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~  573 (781)
T 3v9f_A          530 FNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQV  573 (781)
T ss_dssp             ECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEE
T ss_pred             ccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEE
Confidence            221    235688998888887655544 6665888887765543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.29  E-value=0.058  Score=50.23  Aligned_cols=153  Identities=9%  Similarity=-0.038  Sum_probs=97.3

Q ss_pred             eEEEEccCCCCCEEEEEeCCC--eEEEEEccCCCCCCCCceeEEeeCCCCC-eeEEEEccCCCCCCCCcEEEEEcCCC-E
Q 008363          183 LTMEWSTSPPHDYLLAGCHDG--TVALWKFVASDSSIDSRPLLCFSADTLP-IRAVSWAPAESDSDSANVILTAGHGG-L  258 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~-V~~v~~~p~~~~~~~~~~las~s~d~-v  258 (568)
                      -.|.|+  . +.++.+.+.+|  .|+.+|+.++      +.+..+.-.... --.+++..+       .+++..-.++ +
T Consensus        24 qGL~~~--~-~~LyestG~~g~S~v~~vD~~tg------kv~~~~~l~~~~fgeGi~~~~~-------~ly~ltw~~~~v   87 (243)
T 3mbr_X           24 EGLFYL--R-GHLYESTGETGRSSVRKVDLETG------RILQRAEVPPPYFGAGIVAWRD-------RLIQLTWRNHEG   87 (243)
T ss_dssp             EEEEEE--T-TEEEEEECCTTSCEEEEEETTTC------CEEEEEECCTTCCEEEEEEETT-------EEEEEESSSSEE
T ss_pred             ccEEEE--C-CEEEEECCCCCCceEEEEECCCC------CEEEEEeCCCCcceeEEEEeCC-------EEEEEEeeCCEE
Confidence            478887  3 56677777654  8999999987      666655432221 133444432       5666666667 9


Q ss_pred             EEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec--CC-
Q 008363          259 KFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC--SS-  335 (568)
Q Consensus       259 ~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~--h~-  335 (568)
                      .+||..+. +.+.++..-. .-..|+  +++..|+.+..++.|.++|..++.        .+        ..+..  +. 
T Consensus        88 ~v~D~~tl-~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~--------~~--------~~I~V~~~g~  147 (243)
T 3mbr_X           88 FVYDLATL-TPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQ--------QV--------GSIKVTAGGR  147 (243)
T ss_dssp             EEEETTTT-EEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCC--------EE--------EEEECEETTE
T ss_pred             EEEECCcC-cEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCe--------EE--------EEEEEccCCc
Confidence            99999987 6666664222 223444  567778887778899999985422        21        23322  21 


Q ss_pred             --CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          336 --FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       336 --~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                        ..++.+.|. +|.+.+..-.+..|.+.|..++++...
T Consensus       148 ~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~  185 (243)
T 3mbr_X          148 PLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAW  185 (243)
T ss_dssp             ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEE
T ss_pred             ccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEE
Confidence              345667765 566555554678999999999887653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.21  E-value=0.17  Score=50.13  Aligned_cols=153  Identities=7%  Similarity=0.019  Sum_probs=97.0

Q ss_pred             eEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363          183 LTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF  260 (568)
Q Consensus       183 ~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l  260 (568)
                      ..++|.  +... ++++-...+.|..+++...      .....+.........|++.+.+     ..++++-...+ |.+
T Consensus        76 ~~l~~d--~~~~~ly~~D~~~~~I~r~~~~g~------~~~~~~~~~~~~p~glavd~~~-----g~ly~~d~~~~~I~~  142 (349)
T 3v64_C           76 IALDFH--HRRELVFWSDVTLDRILRANLNGS------NVEEVVSTGLESPGGLAVDWVH-----DKLYWTDSGTSRIEV  142 (349)
T ss_dssp             EEEEEE--TTTTEEEEEETTTTEEEEEETTSC------SCEEEECSSCSCCCEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred             EEEEEe--ccccEEEEEeccCCceEEEecCCC------CceEEEeCCCCCccEEEEecCC-----CeEEEEcCCCCeEEE
Confidence            789998  4444 4555556788999998755      2222332333456789999755     15666666666 999


Q ss_pred             EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-C-CcEEEEEccccccCCCCCCCCccCccccceEEEe-cCCCC
Q 008363          261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-D-GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN-CSSFA  337 (568)
Q Consensus       261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-d-g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~-~h~~~  337 (568)
                      .++.... ....+...-.....|+++|.+..|+.+.. . +.|..+++.         |...        ..+. ..-..
T Consensus       143 ~~~dG~~-~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d---------G~~~--------~~~~~~~~~~  204 (349)
T 3v64_C          143 ANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD---------GSGR--------RIIADTHLFW  204 (349)
T ss_dssp             EETTSCS-CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT---------SCSC--------EESCCSSCSC
T ss_pred             EcCCCCc-eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC---------CCCc--------EEEEECCCCC
Confidence            9988653 22233333345689999997777776644 4 778888873         3221        1221 12234


Q ss_pred             EEEEEEecCCCEEEEEe-CCCeEEEEEcCC
Q 008363          338 IWSVQVSRLTGMVAYCS-ADGTVHRFQLTA  366 (568)
Q Consensus       338 V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~  366 (568)
                      ...|+|+|++..|..+. ..+.|..+++..
T Consensus       205 PnGla~d~~~~~lY~aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          205 PNGLTIDYAGRRMYWVDAKHHVIERANLDG  234 (349)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            68999998766555554 567899999864

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.21  E-value=0.22  Score=50.37  Aligned_cols=158  Identities=8%  Similarity=-0.030  Sum_probs=98.1

Q ss_pred             eEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363          183 LTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF  260 (568)
Q Consensus       183 ~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l  260 (568)
                      ..|+|.  +.+. ++++-...+.|..+++.....  .......+.........|++.+.+     .+++++-...+ |.+
T Consensus       115 ~~l~~d--~~~~~lywsD~~~~~I~~~~~~g~~~--~~~~~~~~~~~~~~p~glavD~~~-----~~lY~~d~~~~~I~~  185 (400)
T 3p5b_L          115 VALDTE--VASNRIYWSDLSQRMICSTQLDRAHG--VSSYDTVISRDIQAPDGLAVDWIH-----SNIYWTDSVLGTVSV  185 (400)
T ss_dssp             EEEEEE--TTTTEEEEEETTTTEEEEEEC--------CCCEEEECSSCSCEEEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred             eEEeee--eccCceEEEecCCCeEEEEEcccCCC--CCcceEEEeCCCCCcccEEEEecC-----CceEEEECCCCeEEE
Confidence            789998  5444 455555678899998874210  012233333344567899999854     15666666666 999


Q ss_pred             EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEccccccCCCCCCCCccCccccceEEE-ecCCCC
Q 008363          261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD--DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV-NCSSFA  337 (568)
Q Consensus       261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~--dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~-~~h~~~  337 (568)
                      .|+.... ....+...-.....|+++|.+.+|+.+..  .+.|...++.         |...        ..+ ...-..
T Consensus       186 ~~~~g~~-~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d---------G~~~--------~~~~~~~l~~  247 (400)
T 3p5b_L          186 ADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN---------GVDI--------YSLVTENIQW  247 (400)
T ss_dssp             ECTTTCS-EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT---------SCSC--------EEEECSSCSC
T ss_pred             EeCCCCc-eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC---------CCcc--------EEEEECCCCc
Confidence            9988653 22223223345789999997777776643  4778888873         3322        222 222346


Q ss_pred             EEEEEEecCCCEEEEEe-CCCeEEEEEcCCC
Q 008363          338 IWSVQVSRLTGMVAYCS-ADGTVHRFQLTAK  367 (568)
Q Consensus       338 V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~~  367 (568)
                      ...|++++++..|..+. ..+.|..+++...
T Consensus       248 P~glavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          248 PNGITLDLLSGRLYWVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             eEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence            78999998876666654 4678999998653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.20  E-value=0.095  Score=55.84  Aligned_cols=29  Identities=17%  Similarity=0.185  Sum_probs=23.1

Q ss_pred             ecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          344 SRLTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       344 sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                      ...+.+++.++.||.|+.||..+++..-.
T Consensus       472 ~t~gg~v~~g~~dg~l~a~D~~tG~~lw~  500 (571)
T 2ad6_A          472 YTKGGLVWYATLDGYLKALDNKDGKELWN  500 (571)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             EECCCEEEEEcCCCeEEEEECCCCCEEEE
Confidence            33567788899999999999998876543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.20  E-value=0.0083  Score=65.44  Aligned_cols=197  Identities=11%  Similarity=0.097  Sum_probs=116.3

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCc-CccceEEEEccCCCCCEEEEEeC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGT-QSIPLTMEWSTSPPHDYLLAGCH  201 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~-~~V~~~v~~s~~~~g~~l~sgs~  201 (568)
                      ..|++++.++.|.-+|..+|+.+-.+.......              .   ..... ..+...+...    +..|++++.
T Consensus        67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~--------------~---~~~~~~~~~~~~~~~~----~~~v~v~~~  125 (668)
T 1kv9_A           67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKV--------------K---ARTSCCDAVNRGVALW----GDKVYVGTL  125 (668)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGG--------------G---GGGCTTCSCCCCCEEE----BTEEEEECT
T ss_pred             CEEEEECCCCeEEEEECCCChhceEECCCCCcc--------------c---cccccccCCccceEEE----CCEEEEEcC
Confidence            477888889999999999988775542211000              0   00000 0000122222    458888999


Q ss_pred             CCeEEEEEccCCCCCCCCceeEEeeCCC----CCeeE-EEEccCCCCCCCCcEEEEEcC-----CC-EEEEECCCCCcce
Q 008363          202 DGTVALWKFVASDSSIDSRPLLCFSADT----LPIRA-VSWAPAESDSDSANVILTAGH-----GG-LKFWDIRDPFRPL  270 (568)
Q Consensus       202 Dg~I~iwd~~~~~~~~~~~~~~~~~~h~----~~V~~-v~~~p~~~~~~~~~~las~s~-----d~-v~lwD~~~~~~~~  270 (568)
                      ||.|..+|..++      +.+..+....    ..+.+ ..+ .++      .+++..+.     ++ |..+|..++ +.+
T Consensus       126 dg~l~alD~~tG------~~~W~~~~~~~~~~~~~~~~P~v-~~~------~v~vg~~~~~~~~~g~v~a~D~~tG-~~~  191 (668)
T 1kv9_A          126 DGRLIALDAKTG------KAIWSQQTTDPAKPYSITGAPRV-VKG------KVIIGNGGAEYGVRGFVSAYDADTG-KLA  191 (668)
T ss_dssp             TSEEEEEETTTC------CEEEEEECSCTTSSCBCCSCCEE-ETT------EEEECCBCTTTCCBCEEEEEETTTC-CEE
T ss_pred             CCEEEEEECCCC------CEeeeeccCCCCCcceecCCCEE-ECC------EEEEeCCCCCcCCCCEEEEEECCCC-cEE
Confidence            999999999987      5555543321    01110 011 133      34443322     46 999999988 666


Q ss_pred             eeeCCC---CC----------------------------CeEEEEEcCCCCEEEEEeCCCc-------------------
Q 008363          271 WDIHPA---PK----------------------------FIYGLDWLPDPGCVILSFDDGA-------------------  300 (568)
Q Consensus       271 ~~~~~h---~~----------------------------~i~~l~~sp~~~~l~s~~~dg~-------------------  300 (568)
                      +.+...   ..                            ....+++.|+...++.++.++.                   
T Consensus       192 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~  271 (668)
T 1kv9_A          192 WRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSS  271 (668)
T ss_dssp             EEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred             EEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence            555311   00                            1124788888888888877653                   


Q ss_pred             EEEEEccccccCCCCCCCCccCccccceEEEec--CC-------CCEEEEEEecCCC---EEEEEeCCCeEEEEEcCCCe
Q 008363          301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC--SS-------FAIWSVQVSRLTG---MVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~--h~-------~~V~~l~~sp~~~---~l~s~s~Dg~v~iwd~~~~~  368 (568)
                      |..+|.+        +|+.++        .+..  |.       .++....+..+|+   +|+.++.+|.++++|..+++
T Consensus       272 v~AlD~~--------tG~~~W--------~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  335 (668)
T 1kv9_A          272 ILAIRPD--------TGKLAW--------HYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK  335 (668)
T ss_dssp             EEEECTT--------TCCEEE--------EEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             EEEEcCC--------CCceee--------EeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence            8888883        576643        3332  21       2333333334664   78999999999999999987


Q ss_pred             ee
Q 008363          369 VE  370 (568)
Q Consensus       369 ~~  370 (568)
                      +.
T Consensus       336 ~l  337 (668)
T 1kv9_A          336 LI  337 (668)
T ss_dssp             EE
T ss_pred             Ee
Confidence            65

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.19  E-value=0.023  Score=55.40  Aligned_cols=153  Identities=8%  Similarity=0.136  Sum_probs=100.3

Q ss_pred             ceEEEEccCCCCCEEEEEe-CCCeEEEEEccCCCCCCCCceeEEeeC----CCC--CeeEEEE---ccCCCCCCCCcEEE
Q 008363          182 PLTMEWSTSPPHDYLLAGC-HDGTVALWKFVASDSSIDSRPLLCFSA----DTL--PIRAVSW---APAESDSDSANVIL  251 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~----h~~--~V~~v~~---~p~~~~~~~~~~la  251 (568)
                      |-+++|.  +....|..++ ..|+|..||...+..    ..+ .+.+    ...  .+..|.|   .|.+      .+++
T Consensus        15 PE~~~wd--~~~g~~~vs~l~~g~V~~~~~~~~~~----~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~g------rL~v   81 (334)
T 2p9w_A           15 PEDTIYD--RTRQVFYQSNLYKGRIEVYNPKTQSH----FNV-VIDGASSNGDGEQQMSGLSLLTHDNSK------RLFA   81 (334)
T ss_dssp             CSCEEEE--TTTTEEEEEETTTTEEEEECTTTCCE----EEE-CCTTTCCSSCCSEEEEEEEESSSSSCC------EEEE
T ss_pred             CcCccCc--CCCCEEEEEeccCCEEEEEcCCCCeE----EEE-ecCCccccCCCcceeeEEEEeccCCCC------cEEE
Confidence            4688998  4444555555 799999999874411    112 2221    111  3579999   5777      6777


Q ss_pred             EEcC-------------CC-EEEEECC---CCCcceeeeC--C-----------CCCCeEEEEEcCCCCEEEEEeCC-Cc
Q 008363          252 TAGH-------------GG-LKFWDIR---DPFRPLWDIH--P-----------APKFIYGLDWLPDPGCVILSFDD-GA  300 (568)
Q Consensus       252 s~s~-------------d~-v~lwD~~---~~~~~~~~~~--~-----------h~~~i~~l~~sp~~~~l~s~~~d-g~  300 (568)
                      +...             +. |..+|+.   ++ +.++...  .           -....+.++..++|+..++++.. +.
T Consensus        82 v~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg-~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~  160 (334)
T 2p9w_A           82 VMKNAKSFNFADQSSHGASSFHSFNLPLSENS-KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA  160 (334)
T ss_dssp             EEEETTTTCTTSCCSSSCCEEEEEESSCCTTC-CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE
T ss_pred             EEcccccccccccccCCCCEEEEEcCCcCCCC-CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe
Confidence            5431             45 9999998   55 3332221  1           11247899999999999988887 88


Q ss_pred             EEEEEccccccCCCCCCCCccCccccceEEEe------cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN------CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~------~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      |..++.         .|+.+        ..+.      ......+.|+++|++.+|++...+|.|..+|+.
T Consensus       161 I~rV~p---------dG~~~--------~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          161 IARVSA---------DGKTV--------STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             EEEECT---------TSCCE--------EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             EEEEeC---------CCCEE--------eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            777666         24322        1211      112235689999999988888779999999986

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.13  E-value=0.15  Score=48.01  Aligned_cols=164  Identities=8%  Similarity=0.118  Sum_probs=103.2

Q ss_pred             cCCcCccceEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCCCCceeEEee-CCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363          175 CGGTQSIPLTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSIDSRPLLCFS-ADTLPIRAVSWAPAESDSDSANVILT  252 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~~~~las  252 (568)
                      .+-...+ ..++|+  |+++ ++++...++.|...|+. +      ..++.+. +-....-.|++.+++      .++++
T Consensus        23 ~g~~~~l-SGla~~--~~~~~L~aV~d~~~~I~~ld~~-g------~v~~~i~l~g~~D~EGIa~~~~g------~~~vs   86 (255)
T 3qqz_A           23 AGITNNI-SSLTWS--AQSNTLFSTINKPAAIVEMTTN-G------DLIRTIPLDFVKDLETIEYIGDN------QFVIS   86 (255)
T ss_dssp             TTCCSCE-EEEEEE--TTTTEEEEEEETTEEEEEEETT-C------CEEEEEECSSCSSEEEEEECSTT------EEEEE
T ss_pred             CCcccCc-ceeEEe--CCCCEEEEEECCCCeEEEEeCC-C------CEEEEEecCCCCChHHeEEeCCC------EEEEE
Confidence            4444566 899999  5544 55667888899998987 4      4555442 223557889999887      56565


Q ss_pred             EcCCC-EEEEECCCCCc--ceeee------CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCc
Q 008363          253 AGHGG-LKFWDIRDPFR--PLWDI------HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGT  323 (568)
Q Consensus       253 ~s~d~-v~lwD~~~~~~--~~~~~------~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~  323 (568)
                      .-.+. +.++++.....  .+...      .........|+|+|.+..|+++.......||.++-..     .+..    
T Consensus        87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~-----~~~~----  157 (255)
T 3qqz_A           87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLL-----SSNE----  157 (255)
T ss_dssp             ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTT-----CSSC----
T ss_pred             ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccc-----cCCc----
Confidence            54455 88988875532  11111      1234456899999999888888776566666663110     1111    


Q ss_pred             cccceEEEe-------cCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCCC
Q 008363          324 KQQGLHLVN-------CSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       324 ~~~~l~~~~-------~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~~  367 (568)
                          +..+.       .+...+.+++++|.. .+++.......|.++|....
T Consensus       158 ----l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~  205 (255)
T 3qqz_A          158 ----LHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE  205 (255)
T ss_dssp             ----CEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC
T ss_pred             ----eeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC
Confidence                11211       123356889999985 55666666778888887654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.13  E-value=0.36  Score=53.31  Aligned_cols=153  Identities=10%  Similarity=0.030  Sum_probs=90.3

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-C-EEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-G-LKF  260 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-~-v~l  260 (568)
                      .+|+|.   .+.++++-...+.|.+.++...      .....+.........|++.|..     ..++++-... . |..
T Consensus       476 LAvD~~---~~~LY~tD~~~~~I~v~~ldG~------~~~~l~~~~l~~P~gIaVDp~~-----g~LYwtD~g~~~~I~~  541 (791)
T 3m0c_C          476 LAVDWI---HSNIYWTDSVLGTVSVADTKGV------KRKTLFRENGSKPRAIVVDPVH-----GFMYWTDWGTPAKIKK  541 (791)
T ss_dssp             EEEETT---TTEEEEEETTTTEEEEEETTSS------SEEEEEECTTCCEEEEEEETTT-----TEEEEEECSSSCEEEE
T ss_pred             eeeeec---CCcEEEEecCCCeEEEEeCCCC------eEEEEEeCCCCCcceEEEecCC-----CCEEEecCCCCCeEEE
Confidence            455544   3356666677889999998754      2222333344568999999975     1455554333 5 888


Q ss_pred             EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccceEEEec--CCCC
Q 008363          261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC--SSFA  337 (568)
Q Consensus       261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~--h~~~  337 (568)
                      .++... .....+...-...+.|++++.+..|+.+. ..+.|..+++.         |...     .  ..+..  .-..
T Consensus       542 ~~~dG~-~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d---------G~~~-----~--~v~~~~~~l~~  604 (791)
T 3m0c_C          542 GGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN---------GGNR-----K--TILEDEKRLAH  604 (791)
T ss_dssp             EETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT---------SCSC-----E--EEEECTTTTSS
T ss_pred             EecCCC-ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC---------CCce-----E--EEecCCCccCC
Confidence            888754 22223333335678999998877777774 46788888883         3322     1  12222  1223


Q ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363          338 IWSVQVSRLTGMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       338 V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~  367 (568)
                      ..+|++.. +.++++-...+.|...+..++
T Consensus       605 P~glav~~-~~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          605 PFSLAVFE-DKVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             EEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred             CCEEEEeC-CEEEEEECCCCEEEEEeCCCC
Confidence            45666632 234444445577777776554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.08  E-value=0.058  Score=52.26  Aligned_cols=140  Identities=8%  Similarity=-0.072  Sum_probs=76.0

Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEE--------eeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363          191 PPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLC--------FSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW  261 (568)
Q Consensus       191 ~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~--------~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw  261 (568)
                      +++..+++-..+|.|..+|...+.    ......        ....-...+.|  ++++.     .++++-.... |..+
T Consensus       126 ~~~~~~v~d~~~g~i~~~d~~~~~----~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~-----~lyv~d~~~~~I~~~  194 (306)
T 2p4o_A          126 SDTQYLTADSYRGAIWLIDVVQPS----GSIWLEHPMLARSNSESVFPAANGL--KRFGN-----FLYVSNTEKMLLLRI  194 (306)
T ss_dssp             SSSEEEEEETTTTEEEEEETTTTE----EEEEEECGGGSCSSTTCCSCSEEEE--EEETT-----EEEEEETTTTEEEEE
T ss_pred             CCCcEEEEECCCCeEEEEeCCCCc----EeEEEECCccccccccCCCCcCCCc--CcCCC-----EEEEEeCCCCEEEEE
Confidence            344444544458888888875320    011000        00111234555  67761     3455555556 9999


Q ss_pred             ECCC-CCc-ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEE
Q 008363          262 DIRD-PFR-PLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIW  339 (568)
Q Consensus       262 D~~~-~~~-~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~  339 (568)
                      |+.. +.. ....+.. ......|+++++|+++++....+.|.+||.         .|+..      .+..+...-...+
T Consensus       195 ~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~---------~G~~~------~~~~~~~~~~~p~  258 (306)
T 2p4o_A          195 PVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAP---------DRSTT------IIAQAEQGVIGST  258 (306)
T ss_dssp             EBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECT---------TCCEE------EEECGGGTCTTEE
T ss_pred             EeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECC---------CCCEE------EEeecccccCCce
Confidence            9874 211 1111110 123466899999987666666888999986         24321      0111222234578


Q ss_pred             EEEEe---cCCCEEEEEeCCC
Q 008363          340 SVQVS---RLTGMVAYCSADG  357 (568)
Q Consensus       340 ~l~~s---p~~~~l~s~s~Dg  357 (568)
                      +++|.   |++..|+.++..+
T Consensus       259 ~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          259 AVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             EEEECCSTTTTTEEEEEECTT
T ss_pred             EEEEecccCCCCEEEEECCCC
Confidence            99998   7877776666543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.03  E-value=0.04  Score=53.66  Aligned_cols=159  Identities=8%  Similarity=0.041  Sum_probs=99.5

Q ss_pred             EEEEccCCCCcccccCcccEEEEEe-CCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccce
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLL-GNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPL  183 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s-~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~  183 (568)
                      +++|.+..          +.|..++ ..|+|..|+...+.......+.  ++.                  .+.....+.
T Consensus        17 ~~~wd~~~----------g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~--~s~------------------~g~~~~~~s   66 (334)
T 2p9w_A           17 DTIYDRTR----------QVFYQSNLYKGRIEVYNPKTQSHFNVVIDG--ASS------------------NGDGEQQMS   66 (334)
T ss_dssp             CEEEETTT----------TEEEEEETTTTEEEEECTTTCCEEEECCTT--TCC------------------SSCCSEEEE
T ss_pred             CccCcCCC----------CEEEEEeccCCEEEEEcCCCCeEEEEecCC--ccc------------------cCCCcceee
Confidence            78898866          4555555 7999999998764433221000  000                  011111127


Q ss_pred             EEEE---ccCCCCCEEEEEe-------------CCCeEEEEEcc---CCCCCCCCceeEEee--C-----------CCCC
Q 008363          184 TMEW---STSPPHDYLLAGC-------------HDGTVALWKFV---ASDSSIDSRPLLCFS--A-----------DTLP  231 (568)
Q Consensus       184 ~v~~---s~~~~g~~l~sgs-------------~Dg~I~iwd~~---~~~~~~~~~~~~~~~--~-----------h~~~  231 (568)
                      .|.|   .  ++++++++..             .+..|..+|+.   ++      +.+....  .           -...
T Consensus        67 Gl~~~~~D--~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg------~~~~~~dL~~~~~~~~~~~g~~~~~  138 (334)
T 2p9w_A           67 GLSLLTHD--NSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENS------KPVWSVNFEKVQDEFEKKAGKRPFG  138 (334)
T ss_dssp             EEEESSSS--SCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTC------CCSEEEESHHHHHHHHHHHSSCCEE
T ss_pred             EEEEeccC--CCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCC------CEEEEecCccccccccccccccccC
Confidence            8888   5  5666766543             16789999998   55      3332221  1           1124


Q ss_pred             eeEEEEccCCCCCCCCcEEEEEcCC-C-EEEEECCCCCcceeeeC----CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 008363          232 IRAVSWAPAESDSDSANVILTAGHG-G-LKFWDIRDPFRPLWDIH----PAPKFIYGLDWLPDPGCVILSFDDGAMRIVS  305 (568)
Q Consensus       232 V~~v~~~p~~~~~~~~~~las~s~d-~-v~lwD~~~~~~~~~~~~----~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd  305 (568)
                      ..+|+..++|      +..++++.. + |...+........+.+.    ......+.|+++|+|..|++....|.|..+|
T Consensus       139 ~nDvavD~~G------naYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD  212 (334)
T 2p9w_A          139 VVQSAQDRDG------NSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFD  212 (334)
T ss_dssp             EEEEEECTTS------CEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred             CceeEECCCC------CEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence            8899999999      888888887 7 77777664311112111    1122357999999999999986699999999


Q ss_pred             cc
Q 008363          306 LL  307 (568)
Q Consensus       306 ~~  307 (568)
                      ++
T Consensus       213 ~~  214 (334)
T 2p9w_A          213 VS  214 (334)
T ss_dssp             CS
T ss_pred             CC
Confidence            85

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.02  E-value=0.024  Score=58.14  Aligned_cols=153  Identities=12%  Similarity=0.142  Sum_probs=91.1

Q ss_pred             ceEEEEccCC-CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCc-EEEEEcCC---
Q 008363          182 PLTMEWSTSP-PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSAN-VILTAGHG---  256 (568)
Q Consensus       182 ~~~v~~s~~~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~-~las~s~d---  256 (568)
                      |..|+|+  | ++..|.++...+.|+.+|+...      . +..+.........|+|++++      + ++++...+   
T Consensus       139 P~~lavd--p~~~g~Lyv~d~~~~I~~id~~~~------~-v~~~~~~~~~P~~ia~d~~G------~~lyvad~~~~~~  203 (430)
T 3tc9_A          139 AVWLSFD--PKNHNHLYLVGEQHPTRLIDFEKE------Y-VSTVYSGLSKVRTICWTHEA------DSMIITNDQNNND  203 (430)
T ss_dssp             CCEEEEE--TTEEEEEEEEEBTEEEEEEETTTT------E-EEEEECCCSCEEEEEECTTS------SEEEEEECCSCTT
T ss_pred             CCEEEEC--CCCCCeEEEEeCCCcEEEEECCCC------E-EEEEecCCCCcceEEEeCCC------CEEEEEeCCCCcc
Confidence            4788888  5 3446666655588999998754      2 33333445668899999998      6 55554422   


Q ss_pred             -C-EEEEECCCCCcceeeeCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec
Q 008363          257 -G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLP-DPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC  333 (568)
Q Consensus       257 -~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp-~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~  333 (568)
                       . +.+++..........+.. ......++++| ++..+++-..++.|+.|+...        +..      ..+.....
T Consensus       204 ~~~v~~~~~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~--------~~~------~~~~~~~~  268 (430)
T 3tc9_A          204 RPNNYILTRESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTT--------QET------TPLFTIQD  268 (430)
T ss_dssp             SEEEEEEEGGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTT--------TEE------EEEEECSS
T ss_pred             cceEEEEeCCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC--------CcE------EEEEEcCC
Confidence             2 333444332221122211 22346788999 666555555678999999842        211      01111111


Q ss_pred             CCCCEEEEEEecCCCEE-EEEeCCCeEEEEEcC
Q 008363          334 SSFAIWSVQVSRLTGMV-AYCSADGTVHRFQLT  365 (568)
Q Consensus       334 h~~~V~~l~~sp~~~~l-~s~s~Dg~v~iwd~~  365 (568)
                       ......|+|+|++++| ++-...+.|..+++.
T Consensus       269 -~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          269 -SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             -SSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             -CCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence             2345789999999854 555567889998874

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.97  E-value=0.2  Score=49.56  Aligned_cols=148  Identities=11%  Similarity=0.127  Sum_probs=86.4

Q ss_pred             eEEEEccCCCCC--EEEEEeC--CCeEEEEEccCCCCCCCCceeEEeeCC-CCCeeEEEEccCCCCCCCCcEEEEEcC--
Q 008363          183 LTMEWSTSPPHD--YLLAGCH--DGTVALWKFVASDSSIDSRPLLCFSAD-TLPIRAVSWAPAESDSDSANVILTAGH--  255 (568)
Q Consensus       183 ~~v~~s~~~~g~--~l~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~h-~~~V~~v~~~p~~~~~~~~~~las~s~--  255 (568)
                      ..+++.+..++.  ++++-..  +.+|.+|++.....  ....+..+.+. -...+++++.++|      .++++...  
T Consensus       115 hGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~--~~~~~~~~~g~~~~~pND~~v~~~G------~fyvt~~~~f  186 (355)
T 3sre_A          115 HGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK--SLLHLKTIRHKLLPSVNDIVAVGPE------HFYATNDHYF  186 (355)
T ss_dssp             EEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT--EEEEEEEECCTTCSSEEEEEEEETT------EEEEEESCSC
T ss_pred             eeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCC--EEEEEeccccCCCCCCceEEEeCCC------CEEecCCcEe
Confidence            566654322443  3444333  56888998875421  12334444332 2357899999998      77777641  


Q ss_pred             ---------------CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCC
Q 008363          256 ---------------GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGK  318 (568)
Q Consensus       256 ---------------d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~  318 (568)
                                     .+ |..+|..   . +..+...-..-+.|+|+||+++|+.+. ..+.|+.|++..       .|.
T Consensus       187 td~~~~~~e~~~~~~~g~vyr~d~~---~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~-------~g~  255 (355)
T 3sre_A          187 IDPYLKSWEMHLGLAWSFVTYYSPN---D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA-------NWT  255 (355)
T ss_dssp             SSHHHHHHHHHTTCCCEEEEEECTT---C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT-------TSC
T ss_pred             CCcccccchhhccCCccEEEEEECC---e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC-------CCc
Confidence                           13 5555553   1 111211123358999999999888875 478999999852       232


Q ss_pred             CccCccccceEEEecCCCCEEEEEEec-CCCEEEEEeCC
Q 008363          319 PFAGTKQQGLHLVNCSSFAIWSVQVSR-LTGMVAYCSAD  356 (568)
Q Consensus       319 ~~~~~~~~~l~~~~~h~~~V~~l~~sp-~~~~l~s~s~D  356 (568)
                      .      .....+ ...+..-.+++.+ +|.+.+++..+
T Consensus       256 l------~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          256 L------TPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             E------EEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred             E------ecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence            2      112233 2245567788888 48777766544

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.96  E-value=0.22  Score=48.58  Aligned_cols=155  Identities=7%  Similarity=0.026  Sum_probs=97.7

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW  261 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw  261 (568)
                      .+|+|.+. ++.++.+-...+.|..+++.....     ....+...-.....+++.+.+     ..++++-...+ |.++
T Consensus        38 ~~ld~d~~-~~~lyw~D~~~~~I~r~~~~g~~~-----~~~~~~~~l~~p~glavd~~~-----g~ly~~d~~~~~I~~~  106 (318)
T 3sov_A           38 AAVDFVFS-HGLIYWSDVSEEAIKRTEFNKTES-----VQNVVVSGLLSPDGLACDWLG-----EKLYWTDSETNRIEVS  106 (318)
T ss_dssp             EEEEEEGG-GTEEEEEETTTTEEEEEETTSSSC-----CCEEEEECCSCCCEEEEETTT-----TEEEEEETTTTEEEEE
T ss_pred             EEEEEEeC-CCEEEEEECCCCcEEEEEccCCCc-----eEEEEcCCCCCccEEEEEcCC-----CeEEEEECCCCEEEEE
Confidence            78999832 345566666778999999875411     112222223456789998754     15666666666 9999


Q ss_pred             ECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEccccccCCCCCCCCccCccccceEEE-ecCCCCE
Q 008363          262 DIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD--DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV-NCSSFAI  338 (568)
Q Consensus       262 D~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~--dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~-~~h~~~V  338 (568)
                      ++.... ....+.........+++.|.+.+|+.+..  .+.|..+++.         |...        ..+ ...-...
T Consensus       107 ~~dG~~-~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d---------G~~~--------~~~~~~~l~~P  168 (318)
T 3sov_A          107 NLDGSL-RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD---------GSSR--------FIIINSEIYWP  168 (318)
T ss_dssp             ETTSCS-CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT---------SCSC--------EEEECSSCSCE
T ss_pred             ECCCCc-EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC---------CCCe--------EEEEECCCCCc
Confidence            987642 22223233445689999998777776653  5778888773         3322        122 2222456


Q ss_pred             EEEEEecCCCEEEEE-eCCCeEEEEEcCC
Q 008363          339 WSVQVSRLTGMVAYC-SADGTVHRFQLTA  366 (568)
Q Consensus       339 ~~l~~sp~~~~l~s~-s~Dg~v~iwd~~~  366 (568)
                      ..|+|++++..|..+ +..+.|..+++..
T Consensus       169 nglavd~~~~~lY~aD~~~~~I~~~d~dG  197 (318)
T 3sov_A          169 NGLTLDYEEQKLYWADAKLNFIHKSNLDG  197 (318)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence            899999976655555 4567899999864

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.88  E-value=0.21  Score=55.41  Aligned_cols=154  Identities=9%  Similarity=0.080  Sum_probs=94.3

Q ss_pred             CccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC-----CCCeeEEEEccCCCCCCCCcEEEEE
Q 008363          179 QSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD-----TLPIRAVSWAPAESDSDSANVILTA  253 (568)
Q Consensus       179 ~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-----~~~V~~v~~~p~~~~~~~~~~las~  253 (568)
                      ..| .++...  ++| .|..|+. +-|.+||..+..      ........     ...|.+|...+++      .+.+.+
T Consensus       450 ~~v-~~i~~d--~~g-~lwigt~-~Gl~~~~~~~~~------~~~~~~~~~~~~~~~~i~~i~~d~~g------~lWigt  512 (781)
T 3v9f_A          450 LDV-RVFYED--KNK-KIWIGTH-AGVFVIDLASKK------VIHHYDTSNSQLLENFVRSIAQDSEG------RFWIGT  512 (781)
T ss_dssp             CCE-EEEEEC--TTS-EEEEEET-TEEEEEESSSSS------CCEEECTTTSSCSCSCEEEEEECTTC------CEEEEE
T ss_pred             CeE-EEEEEC--CCC-CEEEEEC-CceEEEeCCCCe------EEecccCcccccccceeEEEEEcCCC------CEEEEE
Confidence            455 777755  565 5666666 568889987652      22211111     3579999999888      666655


Q ss_pred             cCCCEEEEECCCCCcceeeeCC----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363          254 GHGGLKFWDIRDPFRPLWDIHP----APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH  329 (568)
Q Consensus       254 s~d~v~lwD~~~~~~~~~~~~~----h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~  329 (568)
                      ..+||..||..+. . +..+..    ....|.++...++|... .++.+|.|..||...        ++.         .
T Consensus       513 ~~~Gl~~~~~~~~-~-~~~~~~~~~l~~~~i~~i~~d~~g~lW-i~T~~Glv~~~d~~~--------~~~---------~  572 (781)
T 3v9f_A          513 FGGGVGIYTPDMQ-L-VRKFNQYEGFCSNTINQIYRSSKGQMW-LATGEGLVCFPSARN--------FDY---------Q  572 (781)
T ss_dssp             SSSCEEEECTTCC-E-EEEECTTTTCSCSCEEEEEECTTSCEE-EEETTEEEEESCTTT--------CCC---------E
T ss_pred             cCCCEEEEeCCCC-e-EEEccCCCCCCCCeeEEEEECCCCCEE-EEECCCceEEECCCC--------CcE---------E
Confidence            5567888998754 2 222221    13468999999888844 445567658888742        222         2


Q ss_pred             EEecC----CCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          330 LVNCS----SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       330 ~~~~h----~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                      .+...    ...|.++...++|.+.++ +..| |..|+..+..+..
T Consensus       573 ~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~~~~~~~  616 (781)
T 3v9f_A          573 VFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITSKKCFYT  616 (781)
T ss_dssp             EECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETTTTEEEE
T ss_pred             EccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECCCCceEE
Confidence            33211    235778888887775555 4444 7778887665543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.86  E-value=0.22  Score=53.16  Aligned_cols=26  Identities=15%  Similarity=0.121  Sum_probs=22.1

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          346 LTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       346 ~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                      .+.+|+.++.||.|+.||..+++..-
T Consensus       483 agg~vf~gt~dg~l~A~D~~tG~~lW  508 (599)
T 1w6s_A          483 AGDLVFYGTLDGYLKARDSDTGDLLW  508 (599)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCCEEE
Confidence            56788889999999999999987653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.84  E-value=0.043  Score=59.67  Aligned_cols=112  Identities=10%  Similarity=0.029  Sum_probs=72.9

Q ss_pred             EEEEccCC-CCCEEEEEeCCC-----------eEEEEEccCCCCCCCCceeEEee-CCCCCeeEEEEccCCCCCCCCcEE
Q 008363          184 TMEWSTSP-PHDYLLAGCHDG-----------TVALWKFVASDSSIDSRPLLCFS-ADTLPIRAVSWAPAESDSDSANVI  250 (568)
Q Consensus       184 ~v~~s~~~-~g~~l~sgs~Dg-----------~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~~~~l  250 (568)
                      .+++.  + ++.+++.|+.+.           .+.+||+.+..+    ..+..+. .+.....++++..++      .++
T Consensus       190 ~~av~--~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w----~~~~~~~~~~~~~~~~~~~~~~g------~ly  257 (656)
T 1k3i_A          190 AAAIE--PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV----SDRTVTVTKHDMFCPGISMDGNG------QIV  257 (656)
T ss_dssp             EEEEE--TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB----CCCEEEECSCCCSSCEEEECTTS------CEE
T ss_pred             eEEEE--ecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcE----EeCcccCCCCCCccccccCCCCC------CEE
Confidence            44544  5 778888887643           588999987754    3333332 234445567888888      899


Q ss_pred             EEEcCC-C-EEEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEe-CC-----CcEEEEEccc
Q 008363          251 LTAGHG-G-LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSF-DD-----GAMRIVSLLK  308 (568)
Q Consensus       251 as~s~d-~-v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~d-----g~I~lwd~~~  308 (568)
                      +.|+.+ . +.+||..+.. ..+..+.. ...-.+++..++++.++.|+ .+     ..+.+||...
T Consensus       258 v~GG~~~~~v~~yd~~t~~W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          258 VTGGNDAKKTSLYDSSSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             EECSSSTTCEEEEEGGGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             EeCCCCCCceEEecCcCCceeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence            999865 4 9999988652 11112211 12224566778999999988 34     5689999854

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.81  E-value=0.087  Score=52.90  Aligned_cols=153  Identities=8%  Similarity=0.130  Sum_probs=97.0

Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC----CCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCC
Q 008363          191 PPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD----TLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDP  266 (568)
Q Consensus       191 ~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h----~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~  266 (568)
                      .+|..|+.+- ++.||.-++...      ...+.+..-    -..|..+..+|+|      .+||..+..+|.|-.+..+
T Consensus        30 ~n~t~i~~a~-~n~iR~~~i~~~------~~Yk~L~~~~~i~f~~i~qlvlSpsG------~lLAl~g~~~V~Vv~LP~~   96 (452)
T 3pbp_A           30 QNGTRIVFIQ-DNIIRWYNVLTD------SLYHSLNFSRHLVLDDTFHVISSTSG------DLLCLFNDNEIFVMEVPWG   96 (452)
T ss_dssp             TTTTEEEEEE-TTEEEEEETTTC------SSCEEEECTTTCCCCTTCEEEECTTS------SEEEEECSSEEEEEECCTT
T ss_pred             cCCCEEEEEE-CCEEEEEECCCC------CcceEEecCcccccCceeEEEECCCC------CEEEEecCCeEEEEEecCc
Confidence            4566666665 478888887744      223333322    2357889999999      8999998888888888733


Q ss_pred             C---c--------ceeeeC------CCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcccc
Q 008363          267 F---R--------PLWDIH------PAPKFIYGLDWLPD---PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQ  326 (568)
Q Consensus       267 ~---~--------~~~~~~------~h~~~i~~l~~sp~---~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~  326 (568)
                      .   .        ..+.+.      ....+|..+.|+|-   +..|++-..|+.|++||+.. ..+.|.   .+.  +..
T Consensus        97 ~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~-s~~~P~---~L~--k~~  170 (452)
T 3pbp_A           97 YSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN-SQEKPI---VLN--KPN  170 (452)
T ss_dssp             CSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC-TTSCCE---EES--CCC
T ss_pred             cccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc-CCCCCc---chh--ccc
Confidence            2   1        011221      12567999999994   56899999999999999976 222222   110  000


Q ss_pred             ceEEEecCCCCEEEEEEecCCCEEEEEe--CCCeEEEE
Q 008363          327 GLHLVNCSSFAIWSVQVSRLTGMVAYCS--ADGTVHRF  362 (568)
Q Consensus       327 ~l~~~~~h~~~V~~l~~sp~~~~l~s~s--~Dg~v~iw  362 (568)
                      ....+......|.+++|..++-.|...+  ..|.|+-.
T Consensus       171 ~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          171 NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            1112223346788999999775555544  67777654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.79  E-value=0.41  Score=49.58  Aligned_cols=158  Identities=9%  Similarity=0.144  Sum_probs=92.0

Q ss_pred             eEEEEccC-CCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          104 WDVKWKPY-NAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       104 ~~v~~sp~-~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      +.|+|.|. ..         +++++-...+.|++.|+.++.....+...                       ...... |
T Consensus       142 ~~la~dp~~~~---------~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~-----------------------~~~~~~-p  188 (496)
T 3kya_A          142 GRLAFDPLNKD---------HLYICYDGHKAIQLIDLKNRMLSSPLNIN-----------------------TIPTNR-I  188 (496)
T ss_dssp             EEEEEETTEEE---------EEEEEEETEEEEEEEETTTTEEEEEECCT-----------------------TSSCSB-E
T ss_pred             CEEEEccCCCC---------EEEEEECCCCeEEEEECCCCEEEEEEccC-----------------------ccccCC-C
Confidence            37899984 42         44454444567888888875544322100                       111223 3


Q ss_pred             eEEEE-------ccCCCCCEEEEEeCCC-------eEEEEEccC-CCCC--CCCceeEEeeCCCCCeeEEEEccCCCCCC
Q 008363          183 LTMEW-------STSPPHDYLLAGCHDG-------TVALWKFVA-SDSS--IDSRPLLCFSADTLPIRAVSWAPAESDSD  245 (568)
Q Consensus       183 ~~v~~-------s~~~~g~~l~sgs~Dg-------~I~iwd~~~-~~~~--~~~~~~~~~~~h~~~V~~v~~~p~~~~~~  245 (568)
                      ..|+|       +  ++|+.|+++...+       .|.+++... +...  .....+..+    .....++++|++    
T Consensus       189 ~~ia~~~~~~~~d--~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~----~~p~giavdp~~----  258 (496)
T 3kya_A          189 RSIAFNKKIEGYA--DEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY----KQCNGATIHPIN----  258 (496)
T ss_dssp             EEEEECCCBTTTB--CTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE----SCCCCEEECTTT----
T ss_pred             cEEEEeecccccC--CCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC----CCceEEEEcCCC----
Confidence            88998       8  7888666666554       255665333 1111  001222222    234577889954    


Q ss_pred             CCcEEEEEcCCC-EEEEECC-------CCCc-------------ceeeeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEE
Q 008363          246 SANVILTAGHGG-LKFWDIR-------DPFR-------------PLWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRI  303 (568)
Q Consensus       246 ~~~~las~s~d~-v~lwD~~-------~~~~-------------~~~~~~~h~~~i~~l~~sp~~~~l~s~-~~dg~I~l  303 (568)
                       ..++++-..++ |..+|+.       ++..             .+..+ +.....+.|+|+|+|++|+.+ +....|+.
T Consensus       259 -g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~k  336 (496)
T 3kya_A          259 -GELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMR  336 (496)
T ss_dssp             -CCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             -CeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEE
Confidence             16677777777 9999987       4422             12222 223345899999999976666 45788988


Q ss_pred             EEc
Q 008363          304 VSL  306 (568)
Q Consensus       304 wd~  306 (568)
                      ++.
T Consensus       337 id~  339 (496)
T 3kya_A          337 SDY  339 (496)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            776

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.79  E-value=0.17  Score=53.91  Aligned_cols=26  Identities=15%  Similarity=0.127  Sum_probs=21.5

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEE
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAI  148 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l  148 (568)
                      ..|++++.|+.|..+|..+++.+-..
T Consensus       116 ~~v~v~~~dg~l~alD~~tG~~~W~~  141 (571)
T 2ad6_A          116 GQIVKKQANGHLLALDAKTGKINWEV  141 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CEEEEEeCCCEEEEEECCCCCEEEEe
Confidence            47888888999999999998876543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.69  E-value=0.92  Score=48.73  Aligned_cols=198  Identities=10%  Similarity=0.005  Sum_probs=117.6

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      ++ .|+|.+...         .++.+-..++.|..+++........+ .                        .+-..+.
T Consensus        39 ~~-~l~~d~~~~---------~lywtD~~~~~I~r~~~~g~~~~~v~-~------------------------~g~~~P~   83 (628)
T 4a0p_A           39 AS-ALDFDVTDN---------RIYWTDISLKTISRAFMNGSALEHVV-E------------------------FGLDYPE   83 (628)
T ss_dssp             EE-EEEEETTTT---------EEEEEETTTTEEEEEETTSCSCEEEE-C------------------------SSCSCCC
T ss_pred             eE-EEEEECCCC---------EEEEEECCCCeEEEEECCCCCcEEEE-e------------------------CCCCCcc
Confidence            45 899998763         45555566788988888763322111 0                        1111111


Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-CC-EE
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-GG-LK  259 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~-v~  259 (568)
                      +.+++|.   .++++++-...+.|.+.++...      .....+...-.....|++.|..     ..++.+-.. .. |.
T Consensus        84 GlAvD~~---~~~LY~tD~~~~~I~v~~~dG~------~~~~l~~~~l~~P~~iavdp~~-----G~lY~tD~g~~~~I~  149 (628)
T 4a0p_A           84 GMAVDWL---GKNLYWADTGTNRIEVSKLDGQ------HRQVLVWKDLDSPRALALDPAE-----GFMYWTEWGGKPKID  149 (628)
T ss_dssp             EEEEETT---TTEEEEEETTTTEEEEEETTST------TCEEEECSSCCCEEEEEEETTT-----TEEEEEECSSSCEEE
T ss_pred             eEEEEeC---CCEEEEEECCCCEEEEEecCCC------cEEEEEeCCCCCcccEEEccCC-----CeEEEeCCCCCCEEE
Confidence            2556654   4456666666788999998754      2212222334557899999854     155555422 34 88


Q ss_pred             EEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCE
Q 008363          260 FWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAI  338 (568)
Q Consensus       260 lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V  338 (568)
                      ..++...... ..+ ..-...+.|++++++..|+.+. ..+.|..+|+.         |...        ..+...-...
T Consensus       150 r~~~dG~~~~-~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~d---------G~~~--------~v~~~~l~~P  210 (628)
T 4a0p_A          150 RAAMDGSERT-TLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNML---------GLNR--------EVIADDLPHP  210 (628)
T ss_dssp             EEETTSCSCE-EEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETT---------SCSC--------EEEEECCSCE
T ss_pred             EEeCCCCceE-EEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCC---------CCce--------EEeeccCCCc
Confidence            8888754322 222 2344578999999888777774 47889999983         2211        1233333345


Q ss_pred             EEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363          339 WSVQVSRLTGMVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       339 ~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~  368 (568)
                      .+|++.. +.++++-...+.|...|..++.
T Consensus       211 ~glav~~-~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          211 FGLTQYQ-DYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             EEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred             eEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence            6777764 4444555457888888876553

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.66  E-value=0.016  Score=63.40  Aligned_cols=151  Identities=9%  Similarity=-0.068  Sum_probs=85.6

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-C-EEEEECCCCCcc
Q 008363          192 PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-G-LKFWDIRDPFRP  269 (568)
Q Consensus       192 ~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-~-v~lwD~~~~~~~  269 (568)
                      .+.++++-...+.|.++++...      .....+.........|++.|.+     ..++++-... + |..+++......
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~------~~~~l~~~~~~~P~giavDp~~-----g~ly~td~~~~~~I~~~~~dG~~~~  532 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGV------KRKTLFREQGSKPRAIVVDPVH-----GFMYWTDWGTPAKIKKGGLNGVDIY  532 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSC------CEEEECCCSSCCCCCEECCSSS-----SCCEECCCSSSCCEEBCCSSSCCCC
T ss_pred             CCcEEEEeccCCeEEEEecCCC------ceEEEEeCCCCCcceEEEccCC-----CcEEEcccCCCCeEEEEeCCCCCee
Confidence            3455566566788999988744      2222222223456788999865     1455544332 4 888887644222


Q ss_pred             eeeeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCCCCCCccCccccceEEEec---CCCCEEEEEEec
Q 008363          270 LWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC---SSFAIWSVQVSR  345 (568)
Q Consensus       270 ~~~~~~h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~---h~~~V~~l~~sp  345 (568)
                      + .+...-...+.|+|+|++..|+.+ +..+.|..+|+.         |...        ..+..   .-.....|++..
T Consensus       533 ~-l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d---------G~~~--------~~~~~~~~~~~~P~glavd~  594 (699)
T 1n7d_A          533 S-LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN---------GGNR--------KTILEDEKRLAHPFSLAVFE  594 (699)
T ss_dssp             E-ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS---------SSCC--------EEECCCSSSCSSCCCCEEET
T ss_pred             E-EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccC---------CCce--------EEEEecCCcCCCceEeEEEC
Confidence            2 121222345789999987766666 457789999883         2111        12211   112234455544


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          346 LTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       346 ~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                      + .++++....+.|..++..++.....
T Consensus       595 ~-~lywtd~~~~~V~~~d~~~G~~~~~  620 (699)
T 1n7d_A          595 D-KVFWTDIINEAIFSANRLTGSDVNL  620 (699)
T ss_dssp             T-EEEEECSTTTCEEEEETTTEEEEEC
T ss_pred             C-EEEEEeCCCCeEEEEEccCCCceEE
Confidence            3 4555555668899999876665443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.58  E-value=0.79  Score=50.61  Aligned_cols=160  Identities=9%  Similarity=-0.015  Sum_probs=98.0

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW  261 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw  261 (568)
                      ..|+|.+. .+.++++-...+.|+.+++.....  .......+.........|++.+.+     .+++++-...+ |.+.
T Consensus       427 ~gl~~d~~-~~~lY~sD~~~~~I~~~~l~g~~~--~~~~~~vi~~~l~~P~GLAvD~~~-----~~LY~tD~~~~~I~v~  498 (791)
T 3m0c_C          427 VALDTEVA-SNRIYWSDLSQRMICSTQLDRAHG--VSSYDTVISRDIQAPDGLAVDWIH-----SNIYWTDSVLGTVSVA  498 (791)
T ss_dssp             EEEEEETT-TTEEEEEETTTTEEEEEEC----------CEEEECSSCSCCCEEEEETTT-----TEEEEEETTTTEEEEE
T ss_pred             EEEeeccc-CCeeEEeeccceeEEEEeccCCCC--CcceeEEEecCCCCcceeeeeecC-----CcEEEEecCCCeEEEE
Confidence            77888722 344556666678899888874311  012233343344567889999876     25666666666 9999


Q ss_pred             ECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEccccccCCCCCCCCccCccccceEEE-ecCCCCE
Q 008363          262 DIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD--DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV-NCSSFAI  338 (568)
Q Consensus       262 D~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~--dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~-~~h~~~V  338 (568)
                      ++..... ...+...-.....|++.|.+.+|+.+..  .+.|...++.         |...        ..+ ...-...
T Consensus       499 ~ldG~~~-~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d---------G~~~--------~~lv~~~l~~P  560 (791)
T 3m0c_C          499 DTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN---------GVDI--------YSLVTENIQWP  560 (791)
T ss_dssp             ETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT---------SCCE--------EEEECSSCSCE
T ss_pred             eCCCCeE-EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC---------CCce--------EEEEeCCCCCc
Confidence            9986532 2222233345789999998777777643  3678888873         3322        222 2223567


Q ss_pred             EEEEEecCCCEEEEEe-CCCeEEEEEcCCCe
Q 008363          339 WSVQVSRLTGMVAYCS-ADGTVHRFQLTAKA  368 (568)
Q Consensus       339 ~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~~~  368 (568)
                      ..|++++.+..|+.+. ..+.|..+++....
T Consensus       561 ~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~  591 (791)
T 3m0c_C          561 NGITLDLLSGRLYWVDSKLHSISSIDVNGGN  591 (791)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             eEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence            8999998876666554 45679999886543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.56  E-value=0.76  Score=46.26  Aligned_cols=197  Identities=14%  Similarity=0.213  Sum_probs=122.5

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD  202 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D  202 (568)
                      ++||.=. ..++.|+|+++.+.++..                           .....| .--.|-  .+ +.|+..+ +
T Consensus        78 ~iiALra-g~~lQiFnle~K~klks~---------------------------~~~e~V-vfWkWi--s~-~~l~lVT-~  124 (494)
T 1bpo_A           78 KVIALKA-GKTLQIFNIEMKSKMKAH---------------------------TMTDDV-TFWKWI--SL-NTVALVT-D  124 (494)
T ss_dssp             SCEEEEE-TTEEEEEETTTTEEEEEE---------------------------ECSSCC-CEEEEE--ET-TEEEEEC-S
T ss_pred             cEEEEec-CCeEEEEchHHhhhhcce---------------------------ecCCCc-eEEEec--CC-CeEEEEc-C
Confidence            6777665 688999999997777653                           112345 556776  33 4666655 5


Q ss_pred             CeEEEEEccCCCCCCCCceeEEeeCCC----CCeeEEEEccCCCCCCCCcEEEEEcC-------CC-EEEEECCCCCcce
Q 008363          203 GTVALWKFVASDSSIDSRPLLCFSADT----LPIRAVSWAPAESDSDSANVILTAGH-------GG-LKFWDIRDPFRPL  270 (568)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~~~h~----~~V~~v~~~p~~~~~~~~~~las~s~-------d~-v~lwD~~~~~~~~  270 (568)
                      ..|.-|++...     ..|+..|..|.    ..|..-..+++.      ++++-.|-       .| +.+|.....  .-
T Consensus       125 taVyHWsi~~~-----s~P~kvFdR~~~L~~~QIInY~~d~~~------kW~~l~GI~~~~~~v~G~mQLYS~er~--~s  191 (494)
T 1bpo_A          125 NAVYHWSMEGE-----SQPVKMFDRHSSLAGCQIINYRTDAKQ------KWLLLTGISAQQNRVVGAMQLYSVDRK--VS  191 (494)
T ss_dssp             SEEEEEESSSS-----CCCEEEEECCGGGTTCEEEEEEECTTS------SEEEEEEEEEETTEEEEEEEEEESTTC--CE
T ss_pred             CeeEEecccCC-----CCchhheecchhcccceEEEEEECCCC------CeEEEEeecccCCcccceEEEeecccc--cc
Confidence            68999999753     36888887764    346666777777      77764432       25 889988754  33


Q ss_pred             eeeCCCCCCeEEEEEcCC--C-CEEEEEeC---CCcEEEEEccccccCCCCCCCCccCccccceEEEe---cCCCCEEEE
Q 008363          271 WDIHPAPKFIYGLDWLPD--P-GCVILSFD---DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN---CSSFAIWSV  341 (568)
Q Consensus       271 ~~~~~h~~~i~~l~~sp~--~-~~l~s~~~---dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~---~h~~~V~~l  341 (568)
                      ..+.+|.+....+.+.-+  . ..++.+..   .+.++|.++.....    .+.++.   .+.+..+.   ...+-..++
T Consensus       192 Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~----~~~~f~---kk~vdv~fppe~~~DFPvam  264 (494)
T 1bpo_A          192 QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPT----GNQPFP---KKAVDVFFPPEAQNDFPVAM  264 (494)
T ss_dssp             EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCT----TCCCCC---CEEEECCCCTTSTTCCEEEE
T ss_pred             chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCcc----CCCCcc---ceeeeeeCCcccccCceeEE
Confidence            556677654433333211  1 22333333   37899999854210    011110   01111111   122344688


Q ss_pred             EEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          342 QVSRLTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       342 ~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                      ..++....+...+.-|.|++||++++.....
T Consensus       265 qvs~kygviyviTK~G~i~lyDleTgt~i~~  295 (494)
T 1bpo_A          265 QISEKHDVVFLITKYGYIHLYDLETGTCIYM  295 (494)
T ss_dssp             EEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EecccCCEEEEEecCceEEEEecccceeeee
Confidence            9999999999999999999999999876544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.47  E-value=0.17  Score=54.06  Aligned_cols=200  Identities=11%  Similarity=0.061  Sum_probs=111.1

Q ss_pred             cEEEEEeC-CCcEEEEEC-CCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCE----E
Q 008363          123 GYLAVLLG-NGSLEVWEV-PLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDY----L  196 (568)
Q Consensus       123 ~~las~s~-dg~V~iwd~-~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~----l  196 (568)
                      ..|.+++. ++.|.-+|. .+++.+-.+.......              .......+  .+...++..  |.+..    |
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~--------------~~~~~~~~--~~~~g~av~--p~~g~~~~rV  124 (599)
T 1w6s_A           63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPA--------------ARAVACCD--LVNRGLAYW--PGDGKTPALI  124 (599)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGG--------------GGGGCSSC--SCCCCCEEE--CCCSSSCCEE
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCcc--------------cccccccc--ccccceEEE--ecCCcceeEE
Confidence            46777777 889999999 8888765542111000              00000000  001223332  22334    8


Q ss_pred             EEEeCCCeEEEEEccCCCCCCCCceeEEeeCCC----CCeeE-EEEccCCCCCCCCcEEEEEc-----CCC-EEEEECCC
Q 008363          197 LAGCHDGTVALWKFVASDSSIDSRPLLCFSADT----LPIRA-VSWAPAESDSDSANVILTAG-----HGG-LKFWDIRD  265 (568)
Q Consensus       197 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~----~~V~~-v~~~p~~~~~~~~~~las~s-----~d~-v~lwD~~~  265 (568)
                      ++++.|+.|..+|..++      +.+.......    ..+.+ ..+ .++      .+++.++     .++ |+.+|..+
T Consensus       125 ~v~t~dg~l~AlDa~TG------~~~W~~~~~~~~~~~~~~ssP~v-~~g------~V~vg~~g~e~g~~g~v~A~D~~T  191 (599)
T 1w6s_A          125 LKTQLDGNVAALNAETG------ETVWKVENSDIKVGSTLTIAPYV-VKD------KVIIGSSGAELGVRGYLTAYDVKT  191 (599)
T ss_dssp             EEECTTSEEEEEETTTC------CEEEEEECCCGGGTCBCCSCCEE-ETT------EEEECCBCGGGTCCCEEEEEETTT
T ss_pred             EEEcCCCEEEEEECCCC------CEEEeecCCCCCccceeecCCEE-ECC------EEEEEecccccCCCCeEEEEECCC
Confidence            88889999999999877      5554433211    01111 111 133      3444332     367 99999998


Q ss_pred             CCcceeeeCCCCCC-------------------------------------e-EEEEEcCCCCEEEEEeCC---------
Q 008363          266 PFRPLWDIHPAPKF-------------------------------------I-YGLDWLPDPGCVILSFDD---------  298 (568)
Q Consensus       266 ~~~~~~~~~~h~~~-------------------------------------i-~~l~~sp~~~~l~s~~~d---------  298 (568)
                      + +.++.+......                                     + ..+++.+....++.+..+         
T Consensus       192 G-~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r  270 (599)
T 1w6s_A          192 G-EQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMR  270 (599)
T ss_dssp             C-CEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGS
T ss_pred             C-cEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCccc
Confidence            8 555544321110                                     1 135666777788887655         


Q ss_pred             -------CcEEEEEccccccCCCCCCCCccCccccceEEEec--C--------CCCEEEEEEe-cCC---CEEEEEeCCC
Q 008363          299 -------GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC--S--------SFAIWSVQVS-RLT---GMVAYCSADG  357 (568)
Q Consensus       299 -------g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~--h--------~~~V~~l~~s-p~~---~~l~s~s~Dg  357 (568)
                             +.|..+|.+        +|+.++        .++.  |        ..++. +... .+|   ..|+.++.+|
T Consensus       271 ~gd~~y~~sv~Ald~~--------TG~~~W--------~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G  333 (599)
T 1w6s_A          271 PGDNKWTMTIFGRDAD--------TGEAKF--------GYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNG  333 (599)
T ss_dssp             CSCCTTSSEEEEEETT--------TCCEEE--------EEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTS
T ss_pred             CCCccccceEEEEeCC--------CCceee--------EeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCc
Confidence                   378888884        576543        3332  2        12222 2222 456   5678889999


Q ss_pred             eEEEEEcCCCeeec
Q 008363          358 TVHRFQLTAKAVEK  371 (568)
Q Consensus       358 ~v~iwd~~~~~~~~  371 (568)
                      .++++|..+++..-
T Consensus       334 ~l~~lD~~tG~~lw  347 (599)
T 1w6s_A          334 IVYTLDRTDGALVS  347 (599)
T ss_dssp             EEEEEETTTCCEEE
T ss_pred             EEEEEECCCCCEee
Confidence            99999999887653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.42  E-value=0.38  Score=46.98  Aligned_cols=151  Identities=12%  Similarity=0.181  Sum_probs=83.1

Q ss_pred             CcCccceEEEEccCCCCCEEEEEeCCCeEE-EEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363          177 GTQSIPLTMEWSTSPPHDYLLAGCHDGTVA-LWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH  255 (568)
Q Consensus       177 h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~-iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~  255 (568)
                      +...+ ..+.+.  +++.+++++. +|.|. -+|-....    ...+  -......+..+++.+++      .+++.+. 
T Consensus       161 ~~~~~-~~~~~~--~~~~~~~~g~-~G~~~~S~d~gG~t----W~~~--~~~~~~~~~~~~~~~~g------~~~~~~~-  223 (327)
T 2xbg_A          161 AIGVM-RNLNRS--PSGEYVAVSS-RGSFYSTWEPGQTA----WEPH--NRTTSRRLHNMGFTPDG------RLWMIVN-  223 (327)
T ss_dssp             CCCCE-EEEEEC--TTSCEEEEET-TSSEEEEECTTCSS----CEEE--ECCSSSCEEEEEECTTS------CEEEEET-
T ss_pred             CCcce-EEEEEc--CCCcEEEEEC-CCcEEEEeCCCCCc----eeEC--CCCCCCccceeEECCCC------CEEEEeC-
Confidence            34456 788887  6777776665 45443 33321111    1222  12345678899999887      6665554 


Q ss_pred             CC-EEEEECCCCCcceeeeC----CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363          256 GG-LKFWDIRDPFRPLWDIH----PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL  330 (568)
Q Consensus       256 d~-v~lwD~~~~~~~~~~~~----~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~  330 (568)
                      ++ +++++...+ ..-..+.    .+...+..+.+.+++..+++ +.+|.| ++...        .|+..        ..
T Consensus       224 ~G~~~~s~~D~G-~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~-g~~g~i-~~S~D--------gG~tW--------~~  284 (327)
T 2xbg_A          224 GGKIAFSDPDNS-ENWGELLSPLRRNSVGFLDLAYRTPNEVWLA-GGAGAL-LCSQD--------GGQTW--------QQ  284 (327)
T ss_dssp             TTEEEEEETTEE-EEECCCBCTTSSCCSCEEEEEESSSSCEEEE-ESTTCE-EEESS--------TTSSC--------EE
T ss_pred             CceEEEecCCCC-CeeEeccCCcccCCcceEEEEecCCCEEEEE-eCCCeE-EEeCC--------CCccc--------EE
Confidence            55 777642211 1111111    12235889999988775555 456766 33331        23322        12


Q ss_pred             Ee---cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          331 VN---CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       331 ~~---~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                      +.   .+...++++.|.+++ .+++++.+|.|.-++-
T Consensus       285 ~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          285 DVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT  320 (327)
T ss_dssp             CGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred             cCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence            22   123456788887544 4677778998776653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.29  E-value=0.12  Score=52.94  Aligned_cols=154  Identities=8%  Similarity=0.050  Sum_probs=90.0

Q ss_pred             ceEEEEccCCC--CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC---
Q 008363          182 PLTMEWSTSPP--HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG---  256 (568)
Q Consensus       182 ~~~v~~s~~~~--g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d---  256 (568)
                      |..|+|.  ++  +..|..+...+.|+.+|+.++      . +..+.........|+|++++      .++++...+   
T Consensus       141 P~gvavd--~~s~~g~Lyv~D~~~~I~~id~~~g------~-v~~~~~~~~~P~giavd~dG------~lyVad~~~~~~  205 (433)
T 4hw6_A          141 IWRMMFD--PNSNYDDLYWVGQRDAFRHVDFVNQ------Y-VDIKTTNIGQCADVNFTLNG------DMVVVDDQSSDT  205 (433)
T ss_dssp             CCEEEEC--TTTTTCEEEEECBTSCEEEEETTTT------E-EEEECCCCSCEEEEEECTTC------CEEEEECCSCTT
T ss_pred             CceEEEc--cccCCCEEEEEeCCCCEEEEECCCC------E-EEEeecCCCCccEEEECCCC------CEEEEcCCCCcc
Confidence            4789998  53  335555544488999998654      3 33343445568999999999      766666422   


Q ss_pred             --CEEEEECCCCCcceeeeCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec
Q 008363          257 --GLKFWDIRDPFRPLWDIHPAPKFIYGLDWLP-DPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC  333 (568)
Q Consensus       257 --~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp-~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~  333 (568)
                        ++...+..........+. .-.....++++| ++..+++-..++.|+.+|..        +|...     ..+... +
T Consensus       206 ~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~--------~g~~~-----~~~~~~-~  270 (433)
T 4hw6_A          206 NTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA--------TGTLT-----EEEVMM-D  270 (433)
T ss_dssp             SEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTT--------TCCEE-----EEEEEC-S
T ss_pred             cceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC--------CCeEE-----EEEecc-C
Confidence              244444433221111111 123346788999 66655555567889999883        23321     001111 1


Q ss_pred             CCCCEEEEEEecCCCEE-EEEeCCCeEEEEEcC
Q 008363          334 SSFAIWSVQVSRLTGMV-AYCSADGTVHRFQLT  365 (568)
Q Consensus       334 h~~~V~~l~~sp~~~~l-~s~s~Dg~v~iwd~~  365 (568)
                      ....-..++|+|++.+| ++-...+.|+.+++.
T Consensus       271 ~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          271 TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            12223469999999855 444556889998875

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.13  E-value=0.14  Score=56.51  Aligned_cols=152  Identities=13%  Similarity=0.116  Sum_probs=82.3

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCC-----CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcC
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGN-----GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ  179 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~d-----g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~  179 (568)
                      .++|+|++          +.|+....|     ..|.++++.+++....+               +..        ..+..
T Consensus       225 ~~~WspDg----------~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l---------------v~~--------~~~~~  271 (751)
T 2xe4_A          225 EIVWGPDH----------TSLFYVTKDETLRENKVWRHVMGKLQSEDVC---------------LYE--------EHNPL  271 (751)
T ss_dssp             CCEECSST----------TEEEEEEECTTCCEEEEEEEETTSCGGGCEE---------------EEE--------CCCTT
T ss_pred             eEEEecCC----------CEEEEEEECCCCCCCEEEEEECCCCchhcEE---------------EEe--------cCCCc
Confidence            68899999          566666654     25777888765422111               000        01112


Q ss_pred             ccceEEEEccCCCCCEEEEEeC---CCeEEEEEccCCCCCCCCce-eEEe-eCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363          180 SIPLTMEWSTSPPHDYLLAGCH---DGTVALWKFVASDSSIDSRP-LLCF-SADTLPIRAVSWAPAESDSDSANVILTAG  254 (568)
Q Consensus       180 ~V~~~v~~s~~~~g~~l~sgs~---Dg~I~iwd~~~~~~~~~~~~-~~~~-~~h~~~V~~v~~~p~~~~~~~~~~las~s  254 (568)
                      .. ..+.|+  ++|++|+..+.   ...|.++|+.++..    .. +..+ ........++.|+..+      .+++.+.
T Consensus       272 ~~-~~~~~S--pDg~~l~~~~~~~~~~~l~~~d~~~~~~----~~~~~~l~~~~~~~~~s~~~~~g~------~l~~~t~  338 (751)
T 2xe4_A          272 FS-AFMYKA--ADTNTLCIGSQSPETAEVHLLDLRKGNA----HNTLEIVRPREKGVRYDVQMHGTS------HLVILTN  338 (751)
T ss_dssp             CE-EEEEEC--TTSSEEEEEEECSSCEEEEEEESSSCTT----CCCEEESSCCCTTCCEEEEEETTT------EEEEEEC
T ss_pred             eE-EEEEEC--CCCCEEEEEecCCCCceEEEEECCCCCC----CceeEEeecCCCCceEEEeeeeCC------EEEEEeC
Confidence            23 677898  89998876653   33577888875411    22 1223 3345566777766554      5666655


Q ss_pred             CC----C-EEEEECCCCCcceee-eCCCCC--CeEEEEEcCCCCEEEE-EeCCCcEEEEE
Q 008363          255 HG----G-LKFWDIRDPFRPLWD-IHPAPK--FIYGLDWLPDPGCVIL-SFDDGAMRIVS  305 (568)
Q Consensus       255 ~d----~-v~lwD~~~~~~~~~~-~~~h~~--~i~~l~~sp~~~~l~s-~~~dg~I~lwd  305 (568)
                      .+    . |..+|+.++ ..... +..+..  .+..+.+.  +..|+. ...++..+||-
T Consensus       339 ~~~a~~~~L~~~d~~~~-~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          339 EGGAVNHKLLIAPRGQP-SDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             TTTCTTCEEEEEETTST-TCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEE
T ss_pred             CCCCCCcEEEEEcCCCc-ccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEE
Confidence            43    2 777777642 11122 223333  34455554  555554 45577655543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.12  E-value=0.54  Score=50.03  Aligned_cols=26  Identities=15%  Similarity=0.102  Sum_probs=22.2

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          346 LTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       346 ~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                      .+.+++.++.||.|+.||..+++..-
T Consensus       496 agglvf~g~~dg~l~A~D~~tG~~lW  521 (582)
T 1flg_A          496 AGNLVFTGTGDGYFKAFDAKSGKELW  521 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCCEEE
Confidence            46788889999999999999887653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.08  E-value=1.2  Score=43.61  Aligned_cols=192  Identities=9%  Similarity=0.104  Sum_probs=109.3

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccC--CCCC---EEE
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTS--PPHD---YLL  197 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~--~~g~---~l~  197 (568)
                      .+++.....+-|.+||+ .++.++.+..                         +..    ..|+.-|.  -.|.   +++
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~-------------------------g~~----nnVD~r~~~~l~g~~~dla~   90 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLHSYNT-------------------------GKL----NNVDIRYDFPLNGKKVDIAA   90 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEEEECC-------------------------SCE----EEEEEEEEEEETTEEEEEEE
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEEEccC-------------------------CCc----ccEEEecccccCCceEeEEE
Confidence            56666677889999999 7787776521                         111    22222110  1122   233


Q ss_pred             EEeC---CCeEEEEEccCCCCCCCCceeEEeeC------CC-CCeeEEEE--ccCCCCCCCCcEEEEEcCCC-EEEEECC
Q 008363          198 AGCH---DGTVALWKFVASDSSIDSRPLLCFSA------DT-LPIRAVSW--APAESDSDSANVILTAGHGG-LKFWDIR  264 (568)
Q Consensus       198 sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~------h~-~~V~~v~~--~p~~~~~~~~~~las~s~d~-v~lwD~~  264 (568)
                      +...   +++|.+|++....     ..+..+..      .. ..+..+++  +|..    ...+++....++ +..|++.
T Consensus        91 as~R~~~~n~l~vf~iDp~~-----~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~----g~~yafV~~k~G~~~q~~l~  161 (355)
T 3amr_A           91 ASNRSEGKNTIEIYAIDGKN-----GTLQSMTDPDHPIATAINEVYGFTLYHSQKT----GKYYAMVTGKEGEFEQYELK  161 (355)
T ss_dssp             EEECSTTCCEEEEEEECTTT-----CCEEECSCTTSCEECCCSSCCCEEEEECTTT----CCEEEEEECSSSEEEEEEEE
T ss_pred             EeCCCCCCCeEEEEEECCCC-----CceeeccccccCcCCCCCCeeEEEEEecCCC----CcEEEEEECCCCeEEEEEEE
Confidence            3333   4789999885321     22333311      11 55677887  6643    112555666667 9998884


Q ss_pred             C---CC---cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe-cC-CC
Q 008363          265 D---PF---RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN-CS-SF  336 (568)
Q Consensus       265 ~---~~---~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~-~h-~~  336 (568)
                      .   +.   +.++.+.- .+.+..+...+....|+.+-++.-|..|+.+...   ..++        ..+..+. ++ ..
T Consensus       162 ~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~---~~~~--------~~v~~~~~g~l~a  229 (355)
T 3amr_A          162 ADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDG---GSNG--------TVIDRADGRHLTR  229 (355)
T ss_dssp             ECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTS---CSCC--------EEEEEBSSSSBCS
T ss_pred             eCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCC---CCCc--------eEEEEecCCcccc
Confidence            3   11   34455542 4568889999999999999998666555543210   0011        1222321 22 24


Q ss_pred             CEEEEEEe--cCCC-EEEEEe-CCCeEEEEEcC
Q 008363          337 AIWSVQVS--RLTG-MVAYCS-ADGTVHRFQLT  365 (568)
Q Consensus       337 ~V~~l~~s--p~~~-~l~s~s-~Dg~v~iwd~~  365 (568)
                      .+..|++-  ++++ +|++++ .+.++.+||..
T Consensus       230 DvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          230 DIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             CEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             CcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            67888884  4444 555555 67899999995

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.79  E-value=1.8  Score=43.40  Aligned_cols=115  Identities=15%  Similarity=0.198  Sum_probs=77.5

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCC----c--eeEEeeC------CCCCeeEEEEccCCCCCCCCcEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDS----R--PLLCFSA------DTLPIRAVSWAPAESDSDSANVI  250 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~----~--~~~~~~~------h~~~V~~v~~~p~~~~~~~~~~l  250 (568)
                      ..+..+  |+|++||..+ +..|.|-.+..+......    .  ..+.+.-      ...+|..+.|+|-+-   ++..|
T Consensus        69 ~qlvlS--psG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~---~ds~L  142 (452)
T 3pbp_A           69 FHVISS--TSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSY---RDSCI  142 (452)
T ss_dssp             CEEEEC--TTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBG---GGCEE
T ss_pred             eEEEEC--CCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccC---CCCeE
Confidence            667766  8898988886 568999998743221111    1  1223322      257799999999861   23467


Q ss_pred             EEEcCCC-EEEEECCCCC-cceeeeC---------CCCCCeEEEEEcCCCCEEEEEe--CCCcEEEE
Q 008363          251 LTAGHGG-LKFWDIRDPF-RPLWDIH---------PAPKFIYGLDWLPDPGCVILSF--DDGAMRIV  304 (568)
Q Consensus       251 as~s~d~-v~lwD~~~~~-~~~~~~~---------~h~~~i~~l~~sp~~~~l~s~~--~dg~I~lw  304 (568)
                      ++-..|+ |++||+.... .|. .+.         .....|.+++|.+++-.|++.+  ..|.|+-.
T Consensus       143 VVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          143 VVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            7777776 9999998632 333 222         2235688999999998888866  78888754

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.73  E-value=1  Score=48.21  Aligned_cols=201  Identities=10%  Similarity=-0.023  Sum_probs=107.7

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      ++ .|+|++.+.         .++.+-...+.|..+++........+..                        .+- .. 
T Consensus        42 ~~-~ld~~~~~~---------~ly~sD~~~~~I~r~~~~g~~~~~~v~~------------------------~~~-~~-   85 (619)
T 3s94_A           42 AA-AVDFVFSHG---------LIYWSDVSEEAIKRTEFNKTESVQNVVV------------------------SGL-LS-   85 (619)
T ss_dssp             EE-EEEEETTTT---------EEEEEETTTTEEEEEEC-----CEEEEC------------------------SSC-SC-
T ss_pred             eE-EEEEEeCCC---------EEEEEECCCCeEEEEEccCCCceEEEEe------------------------CCC-CC-
Confidence            44 899998762         3444444567888888876421111100                        110 11 


Q ss_pred             ceEEEEccCC-CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-CC-E
Q 008363          182 PLTMEWSTSP-PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-GG-L  258 (568)
Q Consensus       182 ~~~v~~s~~~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~-v  258 (568)
                      |..|++.  . .+.++++-...+.|.+.++...      .....+...-.....|++.|.+     ..++.|--. .. |
T Consensus        86 P~GlAvD--~~~~~ly~~d~~~~~I~v~~~dG~------~~~~l~~~~l~~P~~Iavdp~~-----g~ly~tD~g~~~~I  152 (619)
T 3s94_A           86 PDGLACD--WLGEKLYWTDSETNRIEVSNLDGS------LRKVLFWQELDQPRAIALDPSS-----GFMYWTDWGEVPKI  152 (619)
T ss_dssp             EEEEEEE--TTTTEEEEEETTTTEEEEEETTSC------SCEEEECSSCSCCCCEEEETTT-----TEEEEEECSSSCEE
T ss_pred             cCeEEEE--ecCCEEEEEeCCCCEEEEEECCCC------CEEEEEeCCCCCCceEEEecCC-----CeEEEeccCCCCEE
Confidence            2444444  3 3456666667889999998754      2222222344557899999975     145555422 34 7


Q ss_pred             EEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCC
Q 008363          259 KFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFA  337 (568)
Q Consensus       259 ~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~  337 (568)
                      ...++... .........-...+.|++++++..|+.+ ...+.|..+|+.         |...     ..  ...+.-..
T Consensus       153 ~r~~~dG~-~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d---------G~~~-----~~--~~~~~~~~  215 (619)
T 3s94_A          153 ERAGMDGS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD---------GTNR-----QA--VVKGSLPH  215 (619)
T ss_dssp             EEEETTSC-SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS---------CCEE-----C-----------
T ss_pred             EEEECCCC-ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC---------CCcc-----EE--EEeCCCCC
Confidence            77777644 2222222234456899999987777776 446788888873         2211     00  11111111


Q ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363          338 IWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV  369 (568)
Q Consensus       338 V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~  369 (568)
                      ..+|++..+ .++++-...+.|...|..++..
T Consensus       216 P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          216 PFALTLFED-ILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred             ceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence            235566544 3444444567888888876643

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.73  E-value=0.52  Score=46.62  Aligned_cols=139  Identities=8%  Similarity=0.023  Sum_probs=80.3

Q ss_pred             CCCeEEEEEccCCCCCCCCceeEEeeC-----CCCCeeEEEEccC--CCCCCCCcEEEEEcC--CC-EEEEECCCCCcc-
Q 008363          201 HDGTVALWKFVASDSSIDSRPLLCFSA-----DTLPIRAVSWAPA--ESDSDSANVILTAGH--GG-LKFWDIRDPFRP-  269 (568)
Q Consensus       201 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~-----h~~~V~~v~~~p~--~~~~~~~~~las~s~--d~-v~lwD~~~~~~~-  269 (568)
                      .+|.|.++|..+...  ....+ .+.+     .......|.+.++  +    ...+++.-..  +. |.+|++...... 
T Consensus        81 ~~G~I~~~d~~~~~~--~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg----~~~L~Vvnh~~~~s~ielf~~d~~~~~~  153 (355)
T 3sre_A           81 KSGKILLMDLNEKEP--AVSEL-EIIGNTLDISSFNPHGISTFIDDDN----TVYLLVVNHPGSSSTVEVFKFQEEEKSL  153 (355)
T ss_dssp             -CCEEEEEETTSSSC--CEEEC-EEECSSCCGGGCCEEEEEEEECTTC----CEEEEEEECSTTCCEEEEEEEETTTTEE
T ss_pred             CCCeEEEEecCCCCC--ceEEE-EccCCCCCcCceeeeeeEEEECCCC----cEEEEEEECCCCCCeEEEEEEECCCCEE
Confidence            699999999874321  11222 2222     2346778887663  3    1234555444  34 888877654222 


Q ss_pred             --eeeeCCC-CCCeEEEEEcCCCCEEEEEeC-----------------CCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363          270 --LWDIHPA-PKFIYGLDWLPDPGCVILSFD-----------------DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH  329 (568)
Q Consensus       270 --~~~~~~h-~~~i~~l~~sp~~~~l~s~~~-----------------dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~  329 (568)
                        +..+.+. -...+.+.+.++|++.++...                 .|.|+-||.          ++.         .
T Consensus       154 ~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~----------~~~---------~  214 (355)
T 3sre_A          154 LHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP----------NDV---------R  214 (355)
T ss_dssp             EEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT----------TCC---------E
T ss_pred             EEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC----------CeE---------E
Confidence              2334332 234689999999997776541                 133444443          111         2


Q ss_pred             EEecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEEcC
Q 008363          330 LVNCSSFAIWSVQVSRLTGMVAYCS-ADGTVHRFQLT  365 (568)
Q Consensus       330 ~~~~h~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~  365 (568)
                      .+...-..-+.++|+|+++.|..+. ..+.|+.|++.
T Consensus       215 ~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~  251 (355)
T 3sre_A          215 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH  251 (355)
T ss_dssp             EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence            2222234558999999997766655 57889999985

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.71  E-value=1.8  Score=42.66  Aligned_cols=217  Identities=14%  Similarity=0.172  Sum_probs=103.1

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      .+.++|.|++          .++ ++..+|.|++++  .+.. ..+..             + ++      ....... +
T Consensus        33 P~~ia~~pdG----------~l~-V~e~~g~I~~i~--~g~~-~~~~~-------------~-~v------~~~g~~~-p   77 (352)
T 2ism_A           33 PWALAFLPDG----------GML-IAERPGRIRLFR--EGRL-STYAE-------------L-SV------YHRGESG-L   77 (352)
T ss_dssp             EEEEEECTTS----------CEE-EEETTTEEEEEE--TTEE-EEEEE-------------C-CC------CCSTTCS-E
T ss_pred             ceEEEEcCCC----------eEE-EEeCCCeEEEEE--CCCc-cEeec-------------c-eE------eecCCCC-c
Confidence            3499999999          544 456679999998  3331 11100             0 00      0111222 3


Q ss_pred             eEEEEccCCC---CCEEEEEeC-C-----CeEEEEEccCCCCCCCCceeEEee---CCCCCeeEEEEccCCCCCCCCcEE
Q 008363          183 LTMEWSTSPP---HDYLLAGCH-D-----GTVALWKFVASDSSIDSRPLLCFS---ADTLPIRAVSWAPAESDSDSANVI  250 (568)
Q Consensus       183 ~~v~~s~~~~---g~~l~sgs~-D-----g~I~iwd~~~~~~~~~~~~~~~~~---~h~~~V~~v~~~p~~~~~~~~~~l  250 (568)
                      ..|+|+  |+   +..|.++.. .     +.|..|+............+..+.   +.......|+|.|++      .++
T Consensus        78 ~gia~~--pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG------~Ly  149 (352)
T 2ism_A           78 LGLALH--PRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG------MLY  149 (352)
T ss_dssp             EEEEEC--TTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS------CEE
T ss_pred             eeEEEC--CCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC------CEE
Confidence            889988  66   344444433 2     567778776331100001122232   111234689999998      777


Q ss_pred             EEEcCC-------------C-EEEEECCCC-------------CcceeeeCCCCCCeEEEEEcC-CCCEEEEEeCCCcE-
Q 008363          251 LTAGHG-------------G-LKFWDIRDP-------------FRPLWDIHPAPKFIYGLDWLP-DPGCVILSFDDGAM-  301 (568)
Q Consensus       251 as~s~d-------------~-v~lwD~~~~-------------~~~~~~~~~h~~~i~~l~~sp-~~~~l~s~~~dg~I-  301 (568)
                      ++.+..             + |.-+|....             ...+.. .++. ....++|+| ++..+++-...+.+ 
T Consensus       150 v~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a-~G~r-np~g~a~d~~~g~l~v~d~g~~~~~  227 (352)
T 2ism_A          150 VTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYS-LGHR-NPQGLAWHPKTGELFSSEHGPSGEQ  227 (352)
T ss_dssp             EECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEE-ECCS-EECCCEECTTTCCEEEEEECC----
T ss_pred             EEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEE-EcCC-CcccEEEECCCCCEEEEEcCCCCCC
Confidence            775431             3 555555431             011111 1332 246789999 56655543333321 


Q ss_pred             -----EEEEccccc-cCCC-CCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          302 -----RIVSLLKAA-YDVP-ATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       302 -----~lwd~~~~~-~~~~-~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                           .|.-+..-. +..| ..+.........++..+..| .....++| .+|.++++.-..+.|...++..
T Consensus       228 ~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~-~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~  297 (352)
T 2ism_A          228 GYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQG-FPPGNLAF-FRGDLYVAGLRGQALLRLVLEG  297 (352)
T ss_dssp             --CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC-CCEEEEEE-ETTEEEEEETTTTEEEEEEEEE
T ss_pred             CCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCC-CCCcceEE-ECCEEEEEECCCCEEEEEEECC
Confidence                 222222111 0000 00000000001334454333 34577888 4566666665667777777753

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=95.66  E-value=1.2  Score=47.28  Aligned_cols=200  Identities=10%  Similarity=0.046  Sum_probs=108.4

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD  202 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D  202 (568)
                      ..|++++.++.|.-+|..+|+.+-.+.........          . +    +..   +...++..    +..+++++.|
T Consensus        69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~----------~-~----~~~---~~~g~a~~----~~~v~~~t~d  126 (582)
T 1flg_A           69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIR----------P-C----CDV---VNRGAAIY----GDKVFFGTLD  126 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCC----------C-S----SCS---CCCCCEEE----TTEEEEEETT
T ss_pred             CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccc----------c-c----ccc---CCCccEEE----CCEEEEEeCC
Confidence            35666666455889999998877554222100000          0 0    000   00112222    4588888999


Q ss_pred             CeEEEEEccCCCCCCCCceeEEeeCCCC----Cee-EEEEccCCCCCCCCc-EEEEEc------CCC-EEEEECCCCCcc
Q 008363          203 GTVALWKFVASDSSIDSRPLLCFSADTL----PIR-AVSWAPAESDSDSAN-VILTAG------HGG-LKFWDIRDPFRP  269 (568)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~~~h~~----~V~-~v~~~p~~~~~~~~~-~las~s------~d~-v~lwD~~~~~~~  269 (568)
                      +.|..+|..++      +.+-.+.....    .+. ......+.   ...+ .++.++      .++ |+.+|..++ +.
T Consensus       127 g~l~AlD~~TG------~~~W~~~~~~~~~~~~~~~sP~v~~~~---~~G~~~v~vg~~~~e~~~~g~v~alD~~tG-~~  196 (582)
T 1flg_A          127 ASVVALNKNTG------KVVWKKKFADHGAGYTMTGAPTIVKDG---KTGKVLLIHGSSGDEFGVVGRLFARDPDTG-EE  196 (582)
T ss_dssp             TEEEEEESSSC------CEEEEEECSCGGGTCBCCSCCEEEECT---TTCCEEEEECCBCGGGCCBCEEEEECTTTC-CE
T ss_pred             CEEEEEECCCC------CEEeeecCCCCCcCcccccCCEEeCCC---cCCcEEEEEeccccccCCCCEEEEEECCCC-CE
Confidence            99999999887      55544432210    011 11111110   0002 455544      256 999999887 55


Q ss_pred             eeeeCCCCCC----------------------------------------e-EEEEEcCCCCEEEEEeC-----------
Q 008363          270 LWDIHPAPKF----------------------------------------I-YGLDWLPDPGCVILSFD-----------  297 (568)
Q Consensus       270 ~~~~~~h~~~----------------------------------------i-~~l~~sp~~~~l~s~~~-----------  297 (568)
                      ++........                                        + ..++++|....++.+..           
T Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~  276 (582)
T 1flg_A          197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART  276 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred             EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence            5443211000                                        0 23567777777777653           


Q ss_pred             ---------C----CcEEEEEccccccCCCCCCCCccCccccceEEEe--cC--------CCCEEEEEEe-cCC---CEE
Q 008363          298 ---------D----GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN--CS--------SFAIWSVQVS-RLT---GMV  350 (568)
Q Consensus       298 ---------d----g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~--~h--------~~~V~~l~~s-p~~---~~l  350 (568)
                               |    +.|..+|..        +|+.++        .++  .|        ..++. +... .+|   .+|
T Consensus       277 ~~gg~~~~~d~~~~~~v~AlD~~--------TG~~~W--------~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v  339 (582)
T 1flg_A          277 AKGGNPHDYDSLYTSGQVGVDPS--------SGEVKW--------FYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKAT  339 (582)
T ss_dssp             CTTSCSTTCCCTTCSEEEEECTT--------TCCEEE--------EEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEE
T ss_pred             cCCCcccccCCcccceEEEEeCC--------CCCEEE--------EEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEE
Confidence                     2    578888883        576653        332  12        12222 2222 456   378


Q ss_pred             EEEeCCCeEEEEEcCCCeeec
Q 008363          351 AYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       351 ~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                      +.++.+|.++++|..++++.-
T Consensus       340 ~~~~~~G~l~~lD~~tG~~lw  360 (582)
T 1flg_A          340 AHADRNGFFYVVDRSNGKLQN  360 (582)
T ss_dssp             EEECTTSEEEEEETTTCCEEE
T ss_pred             EEECCCceEEEEECCCCCEec
Confidence            889999999999999887653

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=95.62  E-value=0.96  Score=44.35  Aligned_cols=154  Identities=8%  Similarity=0.126  Sum_probs=95.3

Q ss_pred             CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCC-CCCCcE-EEEEcC--CC-EEEEECCCCC
Q 008363          193 HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESD-SDSANV-ILTAGH--GG-LKFWDIRDPF  267 (568)
Q Consensus       193 g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~-~~~~~~-las~s~--d~-v~lwD~~~~~  267 (568)
                      ..+++.....+-+.+||+. +      +.++.+..  +.++.|..-|.-.- ...-.+ +++.-.  +. |.+|++....
T Consensus        40 ~s~ii~t~k~~gL~Vydl~-G------~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~  110 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSLD-G------KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN  110 (355)
T ss_dssp             GCEEEEEETTTEEEEEETT-S------CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT
T ss_pred             ccEEEEEcCCCCEEEEcCC-C------cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC
Confidence            3467767778899999994 4      66666643  66888887773200 000002 333333  34 9999774222


Q ss_pred             cceeeeCC------CC-CCeEEEEE--cCC-CC-EEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCC
Q 008363          268 RPLWDIHP------AP-KFIYGLDW--LPD-PG-CVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSF  336 (568)
Q Consensus       268 ~~~~~~~~------h~-~~i~~l~~--sp~-~~-~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~  336 (568)
                      ..+..+..      .. ..++.+|+  +|. +. ++++...+|.+..|++....     .|..-    .+.++++.. .+
T Consensus       111 ~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~-----~g~~~----~~lVR~f~l-gs  180 (355)
T 3amr_A          111 GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADK-----NGYIS----GKKVRAFKM-NS  180 (355)
T ss_dssp             CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECT-----TSCEE----EEEEEEEEC-SS
T ss_pred             CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCC-----CCccc----ceEEEEecC-CC
Confidence            34544421      11 45677777  774 44 67778889999999995321     12111    133456654 35


Q ss_pred             CEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          337 AIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       337 ~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      .+-.+.+.+....|+.+-.|..|..++.+
T Consensus       181 q~EgcvvDd~~g~Lyv~eEd~GIw~~da~  209 (355)
T 3amr_A          181 QTEGMAADDEYGRLYIAEEDEAIWKFSAE  209 (355)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred             CcceEEEcCCCCeEEEecccceEEEEeCC
Confidence            67888999888999999999777666654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.47  E-value=2  Score=41.66  Aligned_cols=149  Identities=8%  Similarity=0.018  Sum_probs=80.0

Q ss_pred             ccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCE-
Q 008363          180 SIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGL-  258 (568)
Q Consensus       180 ~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v-  258 (568)
                      .+ .+|.+.  + +..+++ +.+|.|.. ....+.   ....+.....+...+..|.+.+++      .+++.+..+.| 
T Consensus        81 ~~-~~i~~~--~-~~~~~~-g~~g~i~~-S~DgG~---tW~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~g~v~  145 (327)
T 2xbg_A           81 RF-NSVSFQ--G-NEGWIV-GEPPIMLH-TTDGGQ---SWSQIPLDPKLPGSPRLIKALGNG------SAEMITNVGAIY  145 (327)
T ss_dssp             EE-EEEEEE--T-TEEEEE-EETTEEEE-ESSTTS---SCEECCCCTTCSSCEEEEEEEETT------EEEEEETTCCEE
T ss_pred             cE-EEEEec--C-CeEEEE-ECCCeEEE-ECCCCC---CceECccccCCCCCeEEEEEECCC------CEEEEeCCccEE
Confidence            45 778876  4 344444 45665543 222221   111111111233457788887776      67777655444 


Q ss_pred             EEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEE-EEccccccCCCCCCCCccCccccceEEEecCCCC
Q 008363          259 KFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRI-VSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFA  337 (568)
Q Consensus       259 ~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~l-wd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~  337 (568)
                      +-.|--..-..+  ..++...+..+.+.|++.+++++. +|.|+. +|-         .|...     +.+  -......
T Consensus       146 ~S~DgG~tW~~~--~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~---------gG~tW-----~~~--~~~~~~~  206 (327)
T 2xbg_A          146 RTKDSGKNWQAL--VQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEP---------GQTAW-----EPH--NRTTSRR  206 (327)
T ss_dssp             EESSTTSSEEEE--ECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECT---------TCSSC-----EEE--ECCSSSC
T ss_pred             EEcCCCCCCEEe--ecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCC---------CCCce-----eEC--CCCCCCc
Confidence            434422111222  234456789999999988776654 454433 332         12221     111  1234567


Q ss_pred             EEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363          338 IWSVQVSRLTGMVAYCSADGTVHRFQ  363 (568)
Q Consensus       338 V~~l~~sp~~~~l~s~s~Dg~v~iwd  363 (568)
                      +..+.+.+++.++ .++.+|.++++.
T Consensus       207 ~~~~~~~~~g~~~-~~~~~G~~~~s~  231 (327)
T 2xbg_A          207 LHNMGFTPDGRLW-MIVNGGKIAFSD  231 (327)
T ss_dssp             EEEEEECTTSCEE-EEETTTEEEEEE
T ss_pred             cceeEECCCCCEE-EEeCCceEEEec
Confidence            8889999888655 455688887765

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.28  E-value=0.72  Score=47.70  Aligned_cols=168  Identities=10%  Similarity=0.079  Sum_probs=87.8

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC---CCCCeeEEEE-------ccCCCCCCCCc-EEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA---DTLPIRAVSW-------APAESDSDSAN-VIL  251 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~---h~~~V~~v~~-------~p~~~~~~~~~-~la  251 (568)
                      ..|+|.|...+.++++-...+.|++.|+...      ........   .......|+|       ++++      . +++
T Consensus       142 ~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~------~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G------~~lyv  209 (496)
T 3kya_A          142 GRLAFDPLNKDHLYICYDGHKAIQLIDLKNR------MLSSPLNINTIPTNRIRSIAFNKKIEGYADEA------EYMIV  209 (496)
T ss_dssp             EEEEEETTEEEEEEEEEETEEEEEEEETTTT------EEEEEECCTTSSCSBEEEEEECCCBTTTBCTT------CEEEE
T ss_pred             CEEEEccCCCCEEEEEECCCCeEEEEECCCC------EEEEEEccCccccCCCcEEEEeecccccCCCC------CEEEE
Confidence            6788883212344444444467888888755      22222222   1224899999       9998      5 555


Q ss_pred             EEcCC------C-EEEEECCC--CCc--c-eeeeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCCCCC
Q 008363          252 TAGHG------G-LKFWDIRD--PFR--P-LWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPATGK  318 (568)
Q Consensus       252 s~s~d------~-v~lwD~~~--~~~--~-~~~~~~h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g~  318 (568)
                      +...+      . |.+++...  ...  . ...+... .....++++|++..|+.+ ..++.|+.+|+..... ...++.
T Consensus       210 ad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~-~~~tg~  287 (496)
T 3kya_A          210 AIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFK-TIKNGG  287 (496)
T ss_dssp             EECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHH-HHHTTC
T ss_pred             EeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccc-cccCce
Confidence            54433      2 66776443  111  0 0111111 123577889966556555 5578899999851000 000121


Q ss_pred             C---ccCc---cccceEEEecCCCCEEEEEEecCCCEEEEE-eCCCeEEEEEcC
Q 008363          319 P---FAGT---KQQGLHLVNCSSFAIWSVQVSRLTGMVAYC-SADGTVHRFQLT  365 (568)
Q Consensus       319 ~---~~~~---~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~-s~Dg~v~iwd~~  365 (568)
                      .   ....   ....+... +.....+.|+|+|++.+|..+ +....|+.+++.
T Consensus       288 ~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          288 SWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             CCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             eecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            1   0000   00111122 223345789999999854444 566788886653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.17  E-value=0.064  Score=58.67  Aligned_cols=158  Identities=9%  Similarity=-0.037  Sum_probs=88.4

Q ss_pred             eEEEEccCCCCCEEEEE-eCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363          183 LTMEWSTSPPHDYLLAG-CHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF  260 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l  260 (568)
                      ..|+|.  +.+..|+.+ ...+.|..+++......  ......+.........|++.+.+     .+++++-...+ |.+
T Consensus       409 ~gla~d--~~~~~Ly~sD~~~~~I~~~~~~g~~~~--~~~~~~i~~~~~~P~glavD~~~-----g~LY~tD~~~~~I~v  479 (699)
T 1n7d_A          409 VALDTE--VASNRIYWSDLSQRMICSTQLDRAHGV--SSYDTVISRDIQAPDGLAVDWIH-----SNIYWTDSVLGTVSV  479 (699)
T ss_dssp             CCCEEE--TTTTEEEECCTTTTSBEEEESCCCCC---CCCCCBCCSCC--CCCEECCCSS-----SBCEECCTTTSCEEE
T ss_pred             EEEccc--cccCeEEEEecCCCeEEEEecCCCCCC--cceEEEEeCCCCCcceEEEEeeC-----CcEEEEeccCCeEEE
Confidence            678887  544455444 45688999998741000  01111111112235668887554     15555555555 999


Q ss_pred             EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEccccccCCCCCCCCccCccccceEEEe-cCCCC
Q 008363          261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD--DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN-CSSFA  337 (568)
Q Consensus       261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~--dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~-~h~~~  337 (568)
                      +++... .....+.........|+++|.+.+|+.+..  .+.|..+++.         |...        ..+. ..-..
T Consensus       480 ~d~dg~-~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d---------G~~~--------~~l~~~~l~~  541 (699)
T 1n7d_A          480 ADTKGV-KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN---------GVDI--------YSLVTENIQW  541 (699)
T ss_dssp             EBSSSC-CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS---------SCCC--------CEESCSSCSS
T ss_pred             EecCCC-ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC---------CCCe--------eEEEeCCCCC
Confidence            998755 222222222234578899997666666543  3678777762         3221        1221 11234


Q ss_pred             EEEEEEecCCC-EEEEEeCCCeEEEEEcCCC
Q 008363          338 IWSVQVSRLTG-MVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       338 V~~l~~sp~~~-~l~s~s~Dg~v~iwd~~~~  367 (568)
                      ...|+|+|++. ++++-+..+.|.++++...
T Consensus       542 PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~  572 (699)
T 1n7d_A          542 PNGITLDLLSGRLYWVDSKLHSISSIDVNGG  572 (699)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred             ccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence            56799999864 4455556678999998643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.95  E-value=0.86  Score=52.76  Aligned_cols=197  Identities=14%  Similarity=0.202  Sum_probs=114.4

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD  202 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D  202 (568)
                      ++||.=. ..++.|+|+.+.+.++..                           .....| .--.|-  .+ +.|+..+ +
T Consensus        78 ~iiALra-g~~lQiFnl~~k~klks~---------------------------~~~e~V-vfWkWi--s~-~~l~lVT-~  124 (1630)
T 1xi4_A           78 KVIALKA-GKTLQIFNIEMKSKMKAH---------------------------TMTDDV-TFWKWI--SL-NTVALVT-D  124 (1630)
T ss_pred             ceEEEec-CCeEEEeehHHhhhhccc---------------------------ccCCCc-eEEEec--CC-CeeEEEc-C
Confidence            5666654 678999999986666442                           122345 555665  33 4555554 5


Q ss_pred             CeEEEEEccCCCCCCCCceeEEeeCC----CCCeeEEEEccCCCCCCCCcEEEEEcC-------CC-EEEEECCCCCcce
Q 008363          203 GTVALWKFVASDSSIDSRPLLCFSAD----TLPIRAVSWAPAESDSDSANVILTAGH-------GG-LKFWDIRDPFRPL  270 (568)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~~~h----~~~V~~v~~~p~~~~~~~~~~las~s~-------d~-v~lwD~~~~~~~~  270 (568)
                      ..|.-|++...     ..|+..|..|    ...|..-..+++.      ++++..|-       .| +.+|.+....  -
T Consensus       125 ~aVyHW~~~~~-----s~P~k~fdR~~~L~~~QIinY~~d~~~------kW~~l~gi~~~~~~v~G~mQLyS~er~~--s  191 (1630)
T 1xi4_A          125 NAVYHWSMEGE-----SQPVKMFDRHSSLAGCQIINYRTDAKQ------KWLLLTGISAQQNRVVGAMQLYSVDRKV--S  191 (1630)
T ss_pred             CeEEEeccCCC-----CccHHHHhcchhcccCeeEEeeeCCCC------CeEEEEeeccCCCcccceeeeeeccccc--c
Confidence            68999999642     3566666655    4456666777777      67664432       36 8888887542  2


Q ss_pred             eeeCCCCCCeEEEEEc--CCCCEEEE-Ee---CCCcEEEEEccccccCCCCCCCCccCccccceEEEe---cCCCCEEEE
Q 008363          271 WDIHPAPKFIYGLDWL--PDPGCVIL-SF---DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN---CSSFAIWSV  341 (568)
Q Consensus       271 ~~~~~h~~~i~~l~~s--p~~~~l~s-~~---~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~---~h~~~V~~l  341 (568)
                      ..+.||.+....+...  +....|++ +.   ..+.++|-++....     .|.+-.  ....+..+.   ....-..++
T Consensus       192 Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~-----~~~~~f--~kk~~~~~~~~~~~~Dfpv~~  264 (1630)
T 1xi4_A          192 QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPP-----TGNQPF--PKKAVDVFFPPEAQNDFPVAM  264 (1630)
T ss_pred             hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCc-----cCCCCC--ccccccccCCcccccCcceEE
Confidence            3345554433333221  11222322 21   13789999985431     111100  001111111   112333578


Q ss_pred             EEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          342 QVSRLTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       342 ~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                      ..++...++...+.-|.|.++|+.++.....
T Consensus       265 ~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~  295 (1630)
T 1xi4_A          265 QISEKHDVVFLITKYGYIHLYDLETGTCIYM  295 (1630)
T ss_pred             EeccccCEEEEEecCceEEEEecccchhhhh
Confidence            8898888999999999999999999876543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=94.64  E-value=5.7  Score=42.48  Aligned_cols=155  Identities=5%  Similarity=-0.063  Sum_probs=97.6

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW  261 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw  261 (568)
                      ..|+|.+. ++.++++-..++.|..+++...      .....+.........|++.+.+     .+++++-...+ |.+.
T Consensus        40 ~~l~~d~~-~~~lywtD~~~~~I~r~~~~g~------~~~~v~~~g~~~P~GlAvD~~~-----~~LY~tD~~~~~I~v~  107 (628)
T 4a0p_A           40 SALDFDVT-DNRIYWTDISLKTISRAFMNGS------ALEHVVEFGLDYPEGMAVDWLG-----KNLYWADTGTNRIEVS  107 (628)
T ss_dssp             EEEEEETT-TTEEEEEETTTTEEEEEETTSC------SCEEEECSSCSCCCEEEEETTT-----TEEEEEETTTTEEEEE
T ss_pred             EEEEEECC-CCEEEEEECCCCeEEEEECCCC------CcEEEEeCCCCCcceEEEEeCC-----CEEEEEECCCCEEEEE
Confidence            78998832 3445556667889999988754      2223333223457789998765     15666666566 9999


Q ss_pred             ECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEE
Q 008363          262 DIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD--DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIW  339 (568)
Q Consensus       262 D~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~--dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~  339 (568)
                      ++......+ .+...-.....|++.|...+|+.+..  .+.|...++.         |...        ..+...-....
T Consensus       108 ~~dG~~~~~-l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d---------G~~~--------~~l~~~~~~P~  169 (628)
T 4a0p_A          108 KLDGQHRQV-LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD---------GSER--------TTLVPNVGRAN  169 (628)
T ss_dssp             ETTSTTCEE-EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT---------SCSC--------EEEECSCSSEE
T ss_pred             ecCCCcEEE-EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC---------CCce--------EEEECCCCCcc
Confidence            997653222 22233345689999997666776643  5677777762         3322        22222345668


Q ss_pred             EEEEecCCCEEEEEe-CCCeEEEEEcCCC
Q 008363          340 SVQVSRLTGMVAYCS-ADGTVHRFQLTAK  367 (568)
Q Consensus       340 ~l~~sp~~~~l~s~s-~Dg~v~iwd~~~~  367 (568)
                      .|++++++..|..+. ..+.|..+++...
T Consensus       170 GlalD~~~~~LY~aD~~~~~I~~~d~dG~  198 (628)
T 4a0p_A          170 GLTIDYAKRRLYWTDLDTNLIESSNMLGL  198 (628)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             eEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence            899999866665554 5678888888654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.54  E-value=2.6  Score=40.03  Aligned_cols=151  Identities=10%  Similarity=0.012  Sum_probs=76.8

Q ss_pred             CCCEEEEEeCC-----CeEEEEEccCCC---CCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-----C-
Q 008363          192 PHDYLLAGCHD-----GTVALWKFVASD---SSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-----G-  257 (568)
Q Consensus       192 ~g~~l~sgs~D-----g~I~iwd~~~~~---~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-----~-  257 (568)
                      ++.+++.|+.+     ..+.+||+.+..   +    ..+..+.........+.+  ++      .+++.|+.+     . 
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W----~~~~~~p~~r~~~~~~~~--~~------~lyv~GG~~~~~~~~~  129 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVW----YSVAPMNVRRGLAGATTL--GD------MIYVSGGFDGSRRHTS  129 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCC----EEECCCSSCCBSCEEEEE--TT------EEEEECCBCSSCBCCE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCee----EECCCCCCCccceeEEEE--CC------EEEEEcccCCCcccce
Confidence            45677888765     358899988764   3    222222111111222222  44      677777642     3 


Q ss_pred             EEEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363          258 LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSFDD-----GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV  331 (568)
Q Consensus       258 v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d-----g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~  331 (568)
                      +.+||+.+.. ..+..+.........+.+  +++.++.|+.+     ..+.+||+..        .+.      ..+..+
T Consensus       130 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~--------~~W------~~~~~~  193 (301)
T 2vpj_A          130 MERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHT--------GHW------TNVTPM  193 (301)
T ss_dssp             EEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTT--------TEE------EEECCC
T ss_pred             EEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCC--------CcE------EeCCCC
Confidence            8889987653 122222211111122222  56777777654     4588888743        111      111111


Q ss_pred             ecCCCCEEEEEEecCCCEEEEEeCC-----CeEEEEEcCCCeeecc
Q 008363          332 NCSSFAIWSVQVSRLTGMVAYCSAD-----GTVHRFQLTAKAVEKD  372 (568)
Q Consensus       332 ~~h~~~V~~l~~sp~~~~l~s~s~D-----g~v~iwd~~~~~~~~~  372 (568)
                      .........+.+  ++.+++.|+.+     ..+.+||+.+..+...
T Consensus       194 p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  237 (301)
T 2vpj_A          194 ATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV  237 (301)
T ss_dssp             SSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred             CcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEEC
Confidence            111111122222  56777777764     4689999988877654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=94.44  E-value=2.6  Score=39.97  Aligned_cols=151  Identities=7%  Similarity=-0.036  Sum_probs=76.1

Q ss_pred             CCCEEEEEeCCC-----eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-----C-EEE
Q 008363          192 PHDYLLAGCHDG-----TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-----G-LKF  260 (568)
Q Consensus       192 ~g~~l~sgs~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-----~-v~l  260 (568)
                      ++.+++.|+.++     .+.+||+.+..+    ..+..+.........+.+  ++      .+++.|+.+     . +.+
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~--~~------~iyv~GG~~~~~~~~~~~~  179 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQW----SMLGDMQTAREGAGLVVA--SG------VIYCLGGYDGLNILNSVEK  179 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEE----EEEEECSSCCBSCEEEEE--TT------EEEEECCBCSSCBCCCEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeE----EECCCCCCCcccceEEEE--CC------EEEEECCCCCCcccceEEE
Confidence            466777776543     588888876633    333332211111222222  44      677777643     3 889


Q ss_pred             EECCCCCc-ceeeeCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363          261 WDIRDPFR-PLWDIHPAPKFIYGLDWLPDPGCVILSFDD-----GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS  334 (568)
Q Consensus       261 wD~~~~~~-~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d-----g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h  334 (568)
                      ||+.+..- .+..+.........+.+  ++..++.|+.+     ..|.+||+..        .+.      ..+..+...
T Consensus       180 ~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~--------~~W------~~~~~~p~~  243 (301)
T 2vpj_A          180 YDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRT--------DSW------TTVTSMTTP  243 (301)
T ss_dssp             EETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT--------TEE------EEECCCSSC
T ss_pred             EeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCC--------CcE------EECCCCCCc
Confidence            99876531 11111111111122333  46667777653     4688999853        111      111111111


Q ss_pred             CCCEEEEEEecCCCEEEEEeCC-----CeEEEEEcCCCeeecc
Q 008363          335 SFAIWSVQVSRLTGMVAYCSAD-----GTVHRFQLTAKAVEKD  372 (568)
Q Consensus       335 ~~~V~~l~~sp~~~~l~s~s~D-----g~v~iwd~~~~~~~~~  372 (568)
                      ......+.+  ++.+++.|+.+     ..|.+||+.+..+...
T Consensus       244 r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  284 (301)
T 2vpj_A          244 RCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWEVV  284 (301)
T ss_dssp             CBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEEEE
T ss_pred             ccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEEEc
Confidence            111122222  56777777765     4678899887766543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.28  E-value=0.89  Score=44.92  Aligned_cols=107  Identities=15%  Similarity=0.185  Sum_probs=57.5

Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCcee-EEeeCCCCCeeEEEEccC----CCCCCCCcEEEEEcC-
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPL-LCFSADTLPIRAVSWAPA----ESDSDSANVILTAGH-  255 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~-~~~~~h~~~V~~v~~~p~----~~~~~~~~~las~s~-  255 (568)
                      |..|+|.  |+|+.|+++...|.|++++...... ....-+ ..+.........|+|+|+    +      .++++-.. 
T Consensus        20 P~~i~~~--pdG~~l~V~e~~G~i~~~~~~g~~~-~~~~~~~~v~~~g~~g~~gia~~pdf~~~g------~lYv~~~~~   90 (353)
T 2g8s_A           20 PWALAFL--PDNHGMLITLRGGELRHWQAGKGLS-APLSGVPDVWAHGQGGLLDVVLAPDFAQSR------RIWLSYSEV   90 (353)
T ss_dssp             EEEEEEC--STTCCEEEEETTTEEEEEETTTEEC-CCCBSCCCCCCSTTCSEEEEEECTTHHHHC------EEEEEEEEE
T ss_pred             cEEEEEc--CCCCEEEEEeCCceEEEEeCCCcee-eEecCCcccccCCCCCceeEEECCCCCCCC------EEEEEEeCC
Confidence            5899988  8887355566789999998532100 000000 111122445789999995    4      55555432 


Q ss_pred             ------CC-EEEEECCCCC------ccee-eeCC---CCCCeEEEEEcCCCCEEEEEeC
Q 008363          256 ------GG-LKFWDIRDPF------RPLW-DIHP---APKFIYGLDWLPDPGCVILSFD  297 (568)
Q Consensus       256 ------d~-v~lwD~~~~~------~~~~-~~~~---h~~~i~~l~~sp~~~~l~s~~~  297 (568)
                            .. |..|++....      +.+. .+..   .......|+|.|||.++++.+.
T Consensus        91 ~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd  149 (353)
T 2g8s_A           91 GDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE  149 (353)
T ss_dssp             CSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred             CCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence                  23 6666665321      1111 1110   1112357999999965555443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.23  E-value=1.6  Score=44.77  Aligned_cols=108  Identities=10%  Similarity=0.128  Sum_probs=60.3

Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC------CCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA------DTLPIRAVSWAPAESDSDSANVILTAGH  255 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~------h~~~V~~v~~~p~~~~~~~~~~las~s~  255 (568)
                      |+.|+|.  |+|+++++--..+.|.+++...+.    ...+..+..      ....+..|+|+|+-  ..+..++++-+.
T Consensus        29 P~~~a~~--pdG~l~V~e~~gg~I~~~~~~~g~----~~~~~~~~~~~~~~~g~~Gllgia~~Pdf--~~~g~lYv~~s~  100 (454)
T 1cru_A           29 PHALLWG--PDNQIWLTERATGKILRVNPESGS----VKTVFQVPEIVNDADGQNGLLGFAFHPDF--KNNPYIYISGTF  100 (454)
T ss_dssp             EEEEEEC--TTSCEEEEETTTCEEEEECTTTCC----EEEEEECTTCCCCTTSSCSEEEEEECTTT--TTSCEEEEEEEE
T ss_pred             ceEEEEc--CCCcEEEEEcCCCEEEEEECCCCc----EeEEecCCccccccCCCCceeEEEECCCc--CcCCEEEEEEec
Confidence            4899988  888766665443578888754331    122333321      24567799999951  001155555432


Q ss_pred             ------------CC-EEEEECCCCC------ccee-eeC-CCCCCeEEEEEcCCCCEEEEEeC
Q 008363          256 ------------GG-LKFWDIRDPF------RPLW-DIH-PAPKFIYGLDWLPDPGCVILSFD  297 (568)
Q Consensus       256 ------------d~-v~lwD~~~~~------~~~~-~~~-~h~~~i~~l~~sp~~~~l~s~~~  297 (568)
                                  .. |.-|++....      +.+. .+. ........|+|.|||.+.++.+.
T Consensus       101 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          101 KNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             ECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                        23 6666554321      1121 122 11234689999999987776554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.19  E-value=3.5  Score=39.10  Aligned_cols=151  Identities=8%  Similarity=-0.049  Sum_probs=74.6

Q ss_pred             CCCEEEEEeCCC-----eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-------CC-E
Q 008363          192 PHDYLLAGCHDG-----TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-------GG-L  258 (568)
Q Consensus       192 ~g~~l~sgs~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-------d~-v  258 (568)
                      ++.+++.|+.++     .+.+||+.+..+    ..+..+...... .+++.. ++      .+++.|+.       -. +
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~-~~~~~~-~~------~iyv~GG~~~~~~~~~~~~  175 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEW----FHVAPMNTRRSS-VGVGVV-GG------LLYAVGGYDVASRQCLSTV  175 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEE----EEECCCSSCCBS-CEEEEE-TT------EEEEECCEETTTTEECCCE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeE----eecCCCCCcccC-ceEEEE-CC------EEEEEeCCCCCCCccccEE
Confidence            467778887654     477888776532    222112111111 122222 34      56666653       13 8


Q ss_pred             EEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363          259 KFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSFDD-----GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN  332 (568)
Q Consensus       259 ~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d-----g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~  332 (568)
                      .+||+.+.. ..+..+.........+.+  ++..++.|+.+     ..+.+||+..        .+.      ..+..+.
T Consensus       176 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~--------~~W------~~~~~~~  239 (302)
T 2xn4_A          176 ECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTT--------NAW------RQVADMN  239 (302)
T ss_dssp             EEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTT--------TEE------EEECCCS
T ss_pred             EEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCC--------CCE------eeCCCCC
Confidence            899988653 111112111111122222  56777777654     3688898843        111      1111111


Q ss_pred             cCCCCEEEEEEecCCCEEEEEeCCC-----eEEEEEcCCCeeecc
Q 008363          333 CSSFAIWSVQVSRLTGMVAYCSADG-----TVHRFQLTAKAVEKD  372 (568)
Q Consensus       333 ~h~~~V~~l~~sp~~~~l~s~s~Dg-----~v~iwd~~~~~~~~~  372 (568)
                      ........+.  -++.+++.|+.++     .+.+||+.+..+...
T Consensus       240 ~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  282 (302)
T 2xn4_A          240 MCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV  282 (302)
T ss_dssp             SCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             CccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence            1111111222  2567777777654     489999988877654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.84  E-value=3.2  Score=39.49  Aligned_cols=150  Identities=6%  Similarity=-0.042  Sum_probs=74.3

Q ss_pred             CCCEEEEEeCC------CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC----------
Q 008363          192 PHDYLLAGCHD------GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH----------  255 (568)
Q Consensus       192 ~g~~l~sgs~D------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~----------  255 (568)
                      ++.+++.|+.+      ..+.+||+.+..+    ..+..+....... +++.. ++      .+++.|+.          
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~-~~~~~-~~------~iyv~GG~~~~~~~~~~~  168 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESW----HTKPSMLTQRCSH-GMVEA-NG------LIYVCGGSLGNNVSGRVL  168 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEE----EEECCCSSCCBSC-EEEEE-TT------EEEEECCEESCTTTCEEC
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCce----EeCCCCcCCccee-EEEEE-CC------EEEEECCCCCCCCccccc
Confidence            46677888765      4588889876632    2221111111111 22222 44      56666653          


Q ss_pred             CCEEEEECCCCCc-ceeeeCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEccccccCCCCCCCCccCccccceE
Q 008363          256 GGLKFWDIRDPFR-PLWDIHPAPKFIYGLDWLPDPGCVILSFDD-----GAMRIVSLLKAAYDVPATGKPFAGTKQQGLH  329 (568)
Q Consensus       256 d~v~lwD~~~~~~-~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d-----g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~  329 (568)
                      +.+.+||+.+..- .+..+.........+.+  +++.++.|+.+     ..|.+||+..        .+.      ..+.
T Consensus       169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~--------~~W------~~~~  232 (306)
T 3ii7_A          169 NSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKL--------NEW------KMVS  232 (306)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTT--------TEE------EECC
T ss_pred             ceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCC--------CcE------EECC
Confidence            2288999887531 11111111111122222  56667776643     4588888843        111      1111


Q ss_pred             EEecCCCCEEEEEEecCCCEEEEEeCC-----CeEEEEEcCCCeeec
Q 008363          330 LVNCSSFAIWSVQVSRLTGMVAYCSAD-----GTVHRFQLTAKAVEK  371 (568)
Q Consensus       330 ~~~~h~~~V~~l~~sp~~~~l~s~s~D-----g~v~iwd~~~~~~~~  371 (568)
                      .+.........+.+  ++.+++.|+.+     ..+.+||+.+..+..
T Consensus       233 ~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~  277 (306)
T 3ii7_A          233 PMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVA  277 (306)
T ss_dssp             CCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred             CCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence            11111112222233  56778888754     568889988776654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=93.82  E-value=2.4  Score=40.27  Aligned_cols=151  Identities=9%  Similarity=-0.034  Sum_probs=73.7

Q ss_pred             CCCEEEEEeCCC-----eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-----C-EEE
Q 008363          192 PHDYLLAGCHDG-----TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-----G-LKF  260 (568)
Q Consensus       192 ~g~~l~sgs~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-----~-v~l  260 (568)
                      ++.+++.|+.++     .+.+||..+..+    ..+..+.........+.+  ++      .+++.|+.+     . +.+
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~--~~------~iyv~GG~~~~~~~~~~~~  128 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQW----TSVANMRDRRSTLGAAVL--NG------LLYAVGGFDGSTGLSSVEA  128 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEE----EEECCCSSCCBSCEEEEE--TT------EEEEEEEECSSCEEEEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCce----eeCCCCCccccceEEEEE--CC------EEEEEcCCCCCccCceEEE
Confidence            456777777553     578888876632    222222111111222222  34      577777643     2 778


Q ss_pred             EECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEeCC-------CcEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363          261 WDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSFDD-------GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN  332 (568)
Q Consensus       261 wD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d-------g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~  332 (568)
                      ||+.+.. ..+..+.........+.+  ++..++.|+.+       ..+.+||+..        .+.      ..+..+.
T Consensus       129 ~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~--------~~W------~~~~~~p  192 (302)
T 2xn4_A          129 YNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATT--------NEW------TYIAEMS  192 (302)
T ss_dssp             EETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTT--------TEE------EEECCCS
T ss_pred             EeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCC--------CcE------EECCCCc
Confidence            8887653 111111111111122222  46666666542       3588888843        111      1111111


Q ss_pred             cCCCCEEEEEEecCCCEEEEEeCC-----CeEEEEEcCCCeeecc
Q 008363          333 CSSFAIWSVQVSRLTGMVAYCSAD-----GTVHRFQLTAKAVEKD  372 (568)
Q Consensus       333 ~h~~~V~~l~~sp~~~~l~s~s~D-----g~v~iwd~~~~~~~~~  372 (568)
                      ........+.+  ++.+++.|+.+     ..+.+||+.+..+...
T Consensus       193 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~  235 (302)
T 2xn4_A          193 TRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV  235 (302)
T ss_dssp             SCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEE
T ss_pred             cccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeC
Confidence            11111122222  56777777765     3689999988877654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=93.81  E-value=2.2  Score=41.85  Aligned_cols=108  Identities=10%  Similarity=-0.001  Sum_probs=60.9

Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe----eCCCCCeeEEEEccCCCCCCCCcEEEEEc--C
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF----SADTLPIRAVSWAPAESDSDSANVILTAG--H  255 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~----~~h~~~V~~v~~~p~~~~~~~~~~las~s--~  255 (568)
                      |+.|+|.  |+|.++++--..|.|++++...+.    ...+..+    .........|+|+|+-  ..+..++++-+  .
T Consensus        34 P~~ia~~--pdG~llVter~~G~I~~v~~~~g~----~~~v~~~~~v~~~g~~GllGia~~Pdf--~~~g~lYv~yt~~~  105 (347)
T 3das_A           34 PWGLAPL--PGGDLLVSSRDEATITRVDAKTGR----KTELGEVPGVSPSGEGGLLGIALSPDY--ASDHMVYAYFTSAS  105 (347)
T ss_dssp             EEEEEEC--TTSCEEEEETTTCEEEEECTTTCC----EEEEEECTTCCCBTTBSEEEEEECTTH--HHHCEEEEEEECSS
T ss_pred             ceEEEEc--CCCcEEEEEecCCEEEEEECCCCc----EeeecccCceeecCCCCceeeEecccc--ccCCEEEEEEecCC
Confidence            5899998  888766666558999998765441    1222222    2235568999999951  00014555432  2


Q ss_pred             CC-EEEEECCCC---------Cccee-eeC-CCCCCeEEEEEcCCCCEEEEEeC
Q 008363          256 GG-LKFWDIRDP---------FRPLW-DIH-PAPKFIYGLDWLPDPGCVILSFD  297 (568)
Q Consensus       256 d~-v~lwD~~~~---------~~~~~-~~~-~h~~~i~~l~~sp~~~~l~s~~~  297 (568)
                      +. |.-|.+...         ...+. .+. ........|.|.|||.+.++.+.
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd  159 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGE  159 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBC
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECC
Confidence            33 666665541         11121 121 11122467999999987776553

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=93.72  E-value=1.5  Score=43.11  Aligned_cols=101  Identities=13%  Similarity=0.082  Sum_probs=59.3

Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee---CCCCCeeEEEEccC---CCCCCCCcEEEEEcC
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS---ADTLPIRAVSWAPA---ESDSDSANVILTAGH  255 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~---~h~~~V~~v~~~p~---~~~~~~~~~las~s~  255 (568)
                      |..++|.  |+|++ +++..+|.|.+++  .+.    ...+..+.   ........|+|+|+   +     ..++++-..
T Consensus        33 P~~ia~~--pdG~l-~V~e~~g~I~~i~--~g~----~~~~~~~~v~~~g~~~p~gia~~pdf~~~-----g~lYv~~~~   98 (352)
T 2ism_A           33 PWALAFL--PDGGM-LIAERPGRIRLFR--EGR----LSTYAELSVYHRGESGLLGLALHPRFPQE-----PYVYAYRTV   98 (352)
T ss_dssp             EEEEEEC--TTSCE-EEEETTTEEEEEE--TTE----EEEEEECCCCCSTTCSEEEEEECTTTTTS-----CEEEEEEEE
T ss_pred             ceEEEEc--CCCeE-EEEeCCCeEEEEE--CCC----ccEeecceEeecCCCCceeEEECCCCCCC-----CEEEEEEec
Confidence            4889988  88874 4556679999998  331    12222221   22456899999998   3     145555443


Q ss_pred             C-----C-EEEEECCCCC----ccee-eeC---CCCCCeEEEEEcCCCCEEEEEe
Q 008363          256 G-----G-LKFWDIRDPF----RPLW-DIH---PAPKFIYGLDWLPDPGCVILSF  296 (568)
Q Consensus       256 d-----~-v~lwD~~~~~----~~~~-~~~---~h~~~i~~l~~sp~~~~l~s~~  296 (568)
                      .     . |..|+.....    +.+. .+.   ........|+|.|||...++.+
T Consensus        99 ~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A           99 AEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             CTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             CCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            2     4 8888876431    1221 132   1112236899999997555544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.54  E-value=5.2  Score=37.97  Aligned_cols=151  Identities=8%  Similarity=-0.060  Sum_probs=74.9

Q ss_pred             CCCEEEEEeCC----CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC------C-EEE
Q 008363          192 PHDYLLAGCHD----GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG------G-LKF  260 (568)
Q Consensus       192 ~g~~l~sgs~D----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d------~-v~l  260 (568)
                      ++.+++.|+.+    ..+.+||+.+..+    ..+..+.........+.+  ++      .+++.|+.+      . +.+
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~--~~------~iyv~GG~~~~~~~~~~~~~  122 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSW----YSKLGPPTPRDSLAACAA--EG------KIYTSGGSEVGNSALYLFEC  122 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEE----EEEECCSSCCBSCEEEEE--TT------EEEEECCBBTTBSCCCCEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeE----EECCCCCccccceeEEEE--CC------EEEEECCCCCCCcEeeeEEE
Confidence            45677888755    5688888876633    222222111111222222  44      677777653      3 889


Q ss_pred             EECCCCCc-ceeeeCCCCCCeEEEEEcCCCCEEEEEeC---------CCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363          261 WDIRDPFR-PLWDIHPAPKFIYGLDWLPDPGCVILSFD---------DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL  330 (568)
Q Consensus       261 wD~~~~~~-~~~~~~~h~~~i~~l~~sp~~~~l~s~~~---------dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~  330 (568)
                      ||+.+..- .+..+.........+.+  ++..++.|+.         -..+.+||+..        .+.      ..+..
T Consensus       123 ~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~--------~~W------~~~~~  186 (306)
T 3ii7_A          123 YDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPAT--------ETW------TELCP  186 (306)
T ss_dssp             EETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTT--------TEE------EEECC
T ss_pred             EeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCC--------CeE------EECCC
Confidence            99886531 11111111111122222  5666666653         24588888843        111      11111


Q ss_pred             EecCCCCEEEEEEecCCCEEEEEeCC-----CeEEEEEcCCCeeecc
Q 008363          331 VNCSSFAIWSVQVSRLTGMVAYCSAD-----GTVHRFQLTAKAVEKD  372 (568)
Q Consensus       331 ~~~h~~~V~~l~~sp~~~~l~s~s~D-----g~v~iwd~~~~~~~~~  372 (568)
                      +......-..+.+  ++.+++.|+.+     ..+.+||+.+..+...
T Consensus       187 ~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~  231 (306)
T 3ii7_A          187 MIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV  231 (306)
T ss_dssp             CSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEEC
T ss_pred             ccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC
Confidence            1111111112222  56677777654     4688999988877655

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=93.53  E-value=8.4  Score=44.40  Aligned_cols=160  Identities=14%  Similarity=0.083  Sum_probs=85.7

Q ss_pred             cCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeE-EeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC
Q 008363          178 TQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLL-CFSADTLPIRAVSWAPAESDSDSANVILTAGHG  256 (568)
Q Consensus       178 ~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d  256 (568)
                      .+.+ ++|+--   +| +|++|- ..+|++|++...      +.++ ....+ ..|..+.....+      ++++.|..-
T Consensus       885 ~g~v-~al~~~---~g-~Lla~i-g~~l~vy~l~~~------~~L~~~~~~~-~~i~~~~l~~~~------~~I~vgD~~  945 (1158)
T 3ei3_A          885 KGAV-YSMVEF---NG-KLLASI-NSTVRLYEWTTE------KELRTECNHY-NNIMALYLKTKG------DFILVGDLM  945 (1158)
T ss_dssp             SSCE-EEEEEE---TT-EEEEEE-TTEEEEEEECTT------SCEEEEEEEC-CCSCEEEEEEET------TEEEEEESS
T ss_pred             CCcC-EEEeee---CC-EEEEEc-CCEEEEEECCCC------ceEEEEeecc-ccEEEEEEeccC------CEEEEEEhh
Confidence            4555 887733   35 566555 478999999755      2222 11111 123333333334      577777665


Q ss_pred             -CEEEEECCCCCcceeee--CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec
Q 008363          257 -GLKFWDIRDPFRPLWDI--HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC  333 (568)
Q Consensus       257 -~v~lwD~~~~~~~~~~~--~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~  333 (568)
                       +|.++..+.....+..+  ..+...++++.|..++ .++.+..+|.|.++.......+. ..++.     ......|. 
T Consensus       946 ~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~~~~~~-~~~~~-----L~~~~~fh- 1017 (1158)
T 3ei3_A          946 RSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDSAATTD-EERQH-----LQEVGLFH- 1017 (1158)
T ss_dssp             BCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECTTCCST-TGGGB-----EEEEEEEE-
T ss_pred             heEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCCCCCCc-cccce-----eeeEEEEe-
Confidence             46665443222233222  3456778999998654 67778889999998875421100 01111     12222332 


Q ss_pred             CCCCEEEEEE---ecC---------CCEEEEEeCCCeEEEEEc
Q 008363          334 SSFAIWSVQV---SRL---------TGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       334 h~~~V~~l~~---sp~---------~~~l~s~s~Dg~v~iwd~  364 (568)
                      ....|+++.-   .+.         ...++.++.+|.|-+.-.
T Consensus      1018 lG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A         1018 LGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp             CSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEE
T ss_pred             CCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEE
Confidence            2345666652   222         234777888888877643

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.51  E-value=3.2  Score=39.67  Aligned_cols=151  Identities=8%  Similarity=-0.057  Sum_probs=74.8

Q ss_pred             CCCEEEEEeC----C-----CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-----C
Q 008363          192 PHDYLLAGCH----D-----GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-----G  257 (568)
Q Consensus       192 ~g~~l~sgs~----D-----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-----~  257 (568)
                      ++.+++.|+.    +     ..+.+||+.+..+    ..+..+.........+.+  ++      .+++.|+.+     .
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~--~~------~iyv~GG~~~~~~~~  137 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW----SPCAPMSVPRNRIGVGVI--DG------HIYAVGGSHGCIHHN  137 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEE----EECCCCSSCCBTCEEEEE--TT------EEEEECCEETTEECC
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeE----eECCCCCcCccccEEEEE--CC------EEEEEcCCCCCcccc
Confidence            4567777765    2     3578888876532    222111111111222222  44      577776532     3


Q ss_pred             -EEEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363          258 -LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSFDD-----GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL  330 (568)
Q Consensus       258 -v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d-----g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~  330 (568)
                       +.+||+.+.. ..+..+.........+.+  ++..++.|+.+     ..+.+||+....        .      ..+..
T Consensus       138 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--------W------~~~~~  201 (308)
T 1zgk_A          138 SVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE--------W------RMITA  201 (308)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE--------E------EECCC
T ss_pred             cEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe--------E------eeCCC
Confidence             8889987653 111111111111122333  56666777654     458888874311        1      00011


Q ss_pred             EecCCCCEEEEEEecCCCEEEEEeCC-----CeEEEEEcCCCeeecc
Q 008363          331 VNCSSFAIWSVQVSRLTGMVAYCSAD-----GTVHRFQLTAKAVEKD  372 (568)
Q Consensus       331 ~~~h~~~V~~l~~sp~~~~l~s~s~D-----g~v~iwd~~~~~~~~~  372 (568)
                      +.........+.+  ++.+++.|+.+     ..+.+||+.+..+...
T Consensus       202 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~  246 (308)
T 1zgk_A          202 MNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFV  246 (308)
T ss_dssp             CSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             CCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence            1111111122222  56777777765     5699999988877764

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=92.99  E-value=11  Score=40.16  Aligned_cols=109  Identities=11%  Similarity=0.127  Sum_probs=68.2

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-CC-EEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-GG-LKF  260 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~-v~l  260 (568)
                      .+++|.   .++++++-+..+.|.+.++...      .....+...-....+|++.|..     ..++.+-.. .. |..
T Consensus       397 lAvD~~---~~~lY~tD~~~~~I~v~~~~G~------~~~~l~~~~l~~P~~iavdp~~-----G~ly~tD~g~~~~I~r  462 (619)
T 3s94_A          397 IAVDWV---ARNLYWTDTGTDRIEVTRLNGT------MRKILISEDLEEPRAIVLDPMV-----GYMYWTDWGEIPKIER  462 (619)
T ss_dssp             EEEETT---TTEEEEEETTTTEEEEEETTSC------SCEEEECTTCCSEEEEEEETTT-----TEEEEEECSSSCEEEE
T ss_pred             eEEecc---cCcEEEEeCCCCcEEEEeCCCC------eEEEEEECCCCCeeeEEEEcCC-----CcEEEecCCCCCEEEE
Confidence            455654   4456666667789999998754      1112222334568999999973     155555433 24 777


Q ss_pred             EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEc
Q 008363          261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSL  306 (568)
Q Consensus       261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~  306 (568)
                      .++..... .......-...+.|+++++...|+.+. ..+.|..+++
T Consensus       463 ~~~dG~~~-~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~  508 (619)
T 3s94_A          463 AALDGSDR-VVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNT  508 (619)
T ss_dssp             EETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEES
T ss_pred             EccCCCcc-EEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEec
Confidence            77764422 222233345578999999877777774 4678888887

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=92.91  E-value=6.1  Score=45.56  Aligned_cols=143  Identities=7%  Similarity=0.086  Sum_probs=86.1

Q ss_pred             CCEEEEEe----------CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEE
Q 008363          193 HDYLLAGC----------HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWD  262 (568)
Q Consensus       193 g~~l~sgs----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD  262 (568)
                      ..+|++|+          ..|.|.++++...    ..+.+... ...++|++|+-- .|       +|+.|-...|++||
T Consensus       844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~----kL~lv~~~-~v~g~v~al~~~-~g-------~Lla~ig~~l~vy~  910 (1158)
T 3ei3_A          844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG----KLQTVAEK-EVKGAVYSMVEF-NG-------KLLASINSTVRLYE  910 (1158)
T ss_dssp             CCEEEEEEEECCTTCSSCCCEEEEEEEEETT----EEEEEEEE-EESSCEEEEEEE-TT-------EEEEEETTEEEEEE
T ss_pred             CEEEEEEeeecCCCCCCCCceEEEEEEEECC----EEEEEEEE-EcCCcCEEEeee-CC-------EEEEEcCCEEEEEE
Confidence            36888887          3588999999743    12333332 236788888633 33       44444444599999


Q ss_pred             CCCCCccee-eeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe--cCCCCEE
Q 008363          263 IRDPFRPLW-DIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN--CSSFAIW  339 (568)
Q Consensus       263 ~~~~~~~~~-~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~--~h~~~V~  339 (568)
                      +... ..+. ....+.. |..+...-.+.+|++|..-..|.++..+...      +         .+..+.  .+...++
T Consensus       911 l~~~-~~L~~~~~~~~~-i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~------~---------~L~~~a~D~~~~~vt  973 (1158)
T 3ei3_A          911 WTTE-KELRTECNHYNN-IMALYLKTKGDFILVGDLMRSVLLLAYKPME------G---------NFEEIARDFNPNWMS  973 (1158)
T ss_dssp             ECTT-SCEEEEEEECCC-SCEEEEEEETTEEEEEESSBCEEEEEEETTT------T---------EEEEEEECCSCBCEE
T ss_pred             CCCC-ceEEEEeecccc-EEEEEEeccCCEEEEEEhhheEEEEEEEcCC------C---------eEEEEEeecccccEE
Confidence            9865 2222 1111111 2222232347889999887778777654311      2         122333  3445678


Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          340 SVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       340 ~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                      ++.|-.+ ..++.+..+|.|.++....
T Consensus       974 a~~~ld~-~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          974 AVEILDD-DNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EEEEEET-TEEEEEETTSEEEEEEECT
T ss_pred             EEEEEcc-CcEEEEcCCCcEEEEecCC
Confidence            8888655 4677899999999998865

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=92.68  E-value=8.2  Score=37.86  Aligned_cols=218  Identities=16%  Similarity=0.172  Sum_probs=105.0

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      .+.|+|.|++          . |+++..+|.|++++ .++.  ..+..-              ++      ........ 
T Consensus        31 P~~ia~~pdG----------~-l~V~e~~g~I~~~d-~~G~--~~~~~~--------------~v------~~~g~~g~-   75 (354)
T 3a9g_A           31 PWSIAPLGGG----------R-YLVTERPGRLVLIS-PSGK--KLVASF--------------DV------ANVGEAGL-   75 (354)
T ss_dssp             EEEEEEEETT----------E-EEEEETTTEEEEEC-SSCE--EEEEEC--------------CC------CCSTTCSE-
T ss_pred             CeEEEEcCCC----------e-EEEEeCCCEEEEEe-CCCc--eEeecc--------------ce------eecCCCce-
Confidence            4599999998          5 55566679999987 3443  222100              00      01111223 


Q ss_pred             eEEEEccCCC---CCEEEEEeC----C----CeEEEEEccCCCCCC-CCcee-EEeeC-CCCCeeEEEEccCCCCCCCCc
Q 008363          183 LTMEWSTSPP---HDYLLAGCH----D----GTVALWKFVASDSSI-DSRPL-LCFSA-DTLPIRAVSWAPAESDSDSAN  248 (568)
Q Consensus       183 ~~v~~s~~~~---g~~l~sgs~----D----g~I~iwd~~~~~~~~-~~~~~-~~~~~-h~~~V~~v~~~p~~~~~~~~~  248 (568)
                      ..|+++  |+   +..|.++..    +    ..|..|+........ ..+.+ ..+.. .......|+|.|++      .
T Consensus        76 ~gia~~--pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG------~  147 (354)
T 3a9g_A           76 LGLALH--PEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG------M  147 (354)
T ss_dssp             EEEEEC--TTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS------C
T ss_pred             eeEEeC--CCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC------c
Confidence            788988  65   334444433    3    567777765431000 01111 22221 11224679999999      7


Q ss_pred             EEEEEcCC-------------C-EEEEECCCC--------CcceeeeCCCCCCeEEEEEcC-CCCEEEEEeC-CC--cEE
Q 008363          249 VILTAGHG-------------G-LKFWDIRDP--------FRPLWDIHPAPKFIYGLDWLP-DPGCVILSFD-DG--AMR  302 (568)
Q Consensus       249 ~las~s~d-------------~-v~lwD~~~~--------~~~~~~~~~h~~~i~~l~~sp-~~~~l~s~~~-dg--~I~  302 (568)
                      ++++.+..             + |.-+|....        ...+.. .++.. ...|+|+| +++.+++-.. ++  .|.
T Consensus       148 Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a-~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~  225 (354)
T 3a9g_A          148 LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWS-YGHRN-PQGIDWHRASGVMVATEHGPVGHDEVN  225 (354)
T ss_dssp             EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEE-ECCSC-CCEEEECTTTCCEEEEECCSSSCCEEE
T ss_pred             EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEE-EccCC-cceEEEeCCCCCEEEEecCCCCCcEEE
Confidence            77775431             3 444454321        011222 23332 46899999 5664444322 22  233


Q ss_pred             EEEccccccCCCC-CCCCccCccccceEEEecCCCCEEEEEEe-------cCCCEEEEEeCCCeEEEEEcCC
Q 008363          303 IVSLLKAAYDVPA-TGKPFAGTKQQGLHLVNCSSFAIWSVQVS-------RLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       303 lwd~~~~~~~~~~-~g~~~~~~~~~~l~~~~~h~~~V~~l~~s-------p~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                      +...-. .+..|. .+.........++..+.........++|.       .++.++++.-..+.|...++..
T Consensus       226 ~i~~G~-nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~  296 (354)
T 3a9g_A          226 IILKGG-NYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD  296 (354)
T ss_dssp             EECTTC-BCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred             EecCCC-cCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence            322100 000000 00000000012334442123456788884       4566676666677888888864

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=91.86  E-value=2.4  Score=38.60  Aligned_cols=108  Identities=6%  Similarity=-0.136  Sum_probs=60.1

Q ss_pred             ccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee--CCCCCeeEEEEccCCCCCCCCcEEEEEcCCC
Q 008363          180 SIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS--ADTLPIRAVSWAPAESDSDSANVILTAGHGG  257 (568)
Q Consensus       180 ~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~--~h~~~V~~v~~~p~~~~~~~~~~las~s~d~  257 (568)
                      .+ ..++|+  |+|.+.++  .+|.+.-.+..+.....=...-..+.  +-.. ..++.|.|++      .+.++ +++.
T Consensus        42 ~~-~~laf~--P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G------~LYav-~dG~  108 (236)
T 1tl2_A           42 NF-KFLFLS--PGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNG------YLYAV-SKDK  108 (236)
T ss_dssp             TC-SEEEEC--TTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTS------CEEEE-ETTE
T ss_pred             cc-eeEEEC--CCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCC------CEEEe-CCCE
Confidence            55 789988  78877666  67776555543321100000111110  1111 4789999999      77777 4433


Q ss_pred             EEEEECCCCCcce-----eee-CCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 008363          258 LKFWDIRDPFRPL-----WDI-HPAPKFIYGLDWLPDPGCVILSFDDGAMR  302 (568)
Q Consensus       258 v~lwD~~~~~~~~-----~~~-~~h~~~i~~l~~sp~~~~l~s~~~dg~I~  302 (568)
                      |.-++-.+.....     ..+ ..--..+..|.|.|+|.+.++.  |+.++
T Consensus       109 iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          109 LYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             EEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             EEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence            8777753321111     111 1111357999999999866665  77754

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=91.86  E-value=7.6  Score=39.62  Aligned_cols=32  Identities=13%  Similarity=0.058  Sum_probs=21.7

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR  143 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~  143 (568)
                      ..|.|+|.|++          .++++-...+.|++++..++.
T Consensus        28 ~P~~~a~~pdG----------~l~V~e~~gg~I~~~~~~~g~   59 (454)
T 1cru_A           28 KPHALLWGPDN----------QIWLTERATGKILRVNPESGS   59 (454)
T ss_dssp             SEEEEEECTTS----------CEEEEETTTCEEEEECTTTCC
T ss_pred             CceEEEEcCCC----------cEEEEEcCCCEEEEEECCCCc
Confidence            34599999999          666654443478888765443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=91.32  E-value=5.1  Score=38.15  Aligned_cols=151  Identities=5%  Similarity=-0.103  Sum_probs=74.1

Q ss_pred             CCCEEEEEeCC-----CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-----C-EEE
Q 008363          192 PHDYLLAGCHD-----GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-----G-LKF  260 (568)
Q Consensus       192 ~g~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-----~-v~l  260 (568)
                      ++.+++.|+.+     ..+.+||+.+..+    ..+..+.........+.+  ++      .+++.|+.+     . +.+
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~--~~------~iyv~GG~~~~~~~~~~~~  188 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEW----HLVAPMLTRRIGVGVAVL--NR------LLYAVGGFDGTNRLNSAEC  188 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEE----EECCCCSSCCBSCEEEEE--TT------EEEEECCBCSSCBCCCEEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeE----eECCCCCccccceEEEEE--CC------EEEEEeCCCCCCcCceEEE
Confidence            45677777644     3578888876533    111111111111122222  44      677777653     3 889


Q ss_pred             EECCCCCc-ceeeeCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363          261 WDIRDPFR-PLWDIHPAPKFIYGLDWLPDPGCVILSFDD-----GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS  334 (568)
Q Consensus       261 wD~~~~~~-~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d-----g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h  334 (568)
                      ||+.+..- .+..+.........+.+  ++..++.|+.+     ..+.+||+..        .+.      ..+..+...
T Consensus       189 yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~--------~~W------~~~~~~p~~  252 (308)
T 1zgk_A          189 YYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVET--------ETW------TFVAPMKHR  252 (308)
T ss_dssp             EETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT--------TEE------EECCCCSSC
T ss_pred             EeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCC--------CcE------EECCCCCCC
Confidence            99876531 11111111111223333  56677777654     5688999843        111      111111111


Q ss_pred             CCCEEEEEEecCCCEEEEEeCC-----CeEEEEEcCCCeeecc
Q 008363          335 SFAIWSVQVSRLTGMVAYCSAD-----GTVHRFQLTAKAVEKD  372 (568)
Q Consensus       335 ~~~V~~l~~sp~~~~l~s~s~D-----g~v~iwd~~~~~~~~~  372 (568)
                      ......+.+  ++.+++.|+.+     ..+.+||+.+..+...
T Consensus       253 r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  293 (308)
T 1zgk_A          253 RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV  293 (308)
T ss_dssp             CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred             ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence            111122222  56777777754     4578888887766543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=90.98  E-value=11  Score=35.85  Aligned_cols=27  Identities=4%  Similarity=0.021  Sum_probs=20.3

Q ss_pred             CCCEEEEEeCCC-----eEEEEEcCCCeeecc
Q 008363          346 LTGMVAYCSADG-----TVHRFQLTAKAVEKD  372 (568)
Q Consensus       346 ~~~~l~s~s~Dg-----~v~iwd~~~~~~~~~  372 (568)
                      ++.+++.|+.++     .+.+||+.+..+...
T Consensus       196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~  227 (315)
T 4asc_A          196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF  227 (315)
T ss_dssp             TTEEEEEEEECSSSEEEEEEEEETTTTEEEEE
T ss_pred             CCEEEEEeccCCCCccceEEEEECCCCeEEEC
Confidence            567778887654     588999988877654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=89.13  E-value=2.4  Score=41.48  Aligned_cols=26  Identities=15%  Similarity=0.009  Sum_probs=22.7

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEE
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAI  148 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l  148 (568)
                      +++++++.||.|.-+|..+|+.+-.+
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~   36 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSI   36 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            58999999999999999998877554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=88.50  E-value=4.1  Score=42.32  Aligned_cols=115  Identities=9%  Similarity=0.019  Sum_probs=68.7

Q ss_pred             EEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccce-EEEecCCCCEEEEEEecCCCEEEEEeCCCe
Q 008363          281 YGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGL-HLVNCSSFAIWSVQVSRLTGMVAYCSADGT  358 (568)
Q Consensus       281 ~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l-~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~  358 (568)
                      ..+.++|||+++++++. +.+|.++|++++..-.  .++.+.  ....+ .... -.-.....+|.++|....|.-.|..
T Consensus       326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~--~~k~~~--~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSq  400 (638)
T 3sbq_A          326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLF--AGKLAD--PRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQ  400 (638)
T ss_dssp             CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHH--TTCCSC--GGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTE
T ss_pred             cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhh--hccccC--cccceEeecc-CCCcccEEEECCCCceEeeeeecce
Confidence            46889999999999877 8999999997643100  011100  00111 1222 2234577899999966666668999


Q ss_pred             EEEEEcCCC----------eeeccCCCCCcceeeee----cccCCCCceEEcccCC
Q 008363          359 VHRFQLTAK----------AVEKDHSRNRPMHFLCG----SVTEDESAITVNTPLD  400 (568)
Q Consensus       359 v~iwd~~~~----------~~~~~~~~~~~~~~~~~----s~~~~~~~i~~~~~~~  400 (568)
                      |.-|++...          .+.....-+.+|..++.    ...++|..+.+...++
T Consensus       401 vvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~s  456 (638)
T 3sbq_A          401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFS  456 (638)
T ss_dssp             EEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCC
T ss_pred             EEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccc
Confidence            999999653          12222223334444433    4466777777754433

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=88.34  E-value=13  Score=35.39  Aligned_cols=27  Identities=19%  Similarity=0.145  Sum_probs=18.7

Q ss_pred             CCCEEEEEeCC-----CeEEEEEcCCCeeecc
Q 008363          346 LTGMVAYCSAD-----GTVHRFQLTAKAVEKD  372 (568)
Q Consensus       346 ~~~~l~s~s~D-----g~v~iwd~~~~~~~~~  372 (568)
                      ++.+++.|+.+     ..+.+||+.+..+...
T Consensus       206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~  237 (318)
T 2woz_A          206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM  237 (318)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEETTTCCEEEC
T ss_pred             CCEEEEEcCcCCCCccceEEEEECCCCeEEEC
Confidence            56777777643     3577899888776654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=88.34  E-value=5.8  Score=36.07  Aligned_cols=145  Identities=6%  Similarity=-0.177  Sum_probs=75.5

Q ss_pred             CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC--CCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcce
Q 008363          193 HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD--TLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPL  270 (568)
Q Consensus       193 g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h--~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~  270 (568)
                      ..+|++...| +|+.=.........-......+ ++  =..+..++|+|++      .+.+. ..+.+.-.+..+.....
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G------~LYaV-~~G~Ly~~~~~t~~~~~   74 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGG------ELYGV-LNDKIYKGTPPTHDNDN   74 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTS------CEEEE-ETTEEEEESCCCSTTCC
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCc------cEEEE-eCCeEEEECCCCCCccc
Confidence            3466666666 6554333322110000022223 22  2468899999988      66666 44336666654421111


Q ss_pred             -----eeeC--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEE
Q 008363          271 -----WDIH--PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQV  343 (568)
Q Consensus       271 -----~~~~--~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~  343 (568)
                           ..+-  +... -.++.|.|+|.+.++  .||.|+-++..+       ++.-.+.  ......-.+--..+..|.|
T Consensus        75 W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~-------~~~~~Wl--~~a~~vg~~gw~~~~~lff  142 (236)
T 1tl2_A           75 WMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ-------SDTDNWI--ARATEVGSGGWSGFKFLFF  142 (236)
T ss_dssp             HHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC-------STTCCHH--HHSEEEECSSGGGEEEEEE
T ss_pred             ccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc-------CCCCcee--ccccEeccCCCCceEEEEE
Confidence                 1110  1111 368899999987776  569887776422       1211100  0000111112246789999


Q ss_pred             ecCCCEEEEEeCCCeEE
Q 008363          344 SRLTGMVAYCSADGTVH  360 (568)
Q Consensus       344 sp~~~~l~s~s~Dg~v~  360 (568)
                      .|+|.+.+..  |+.++
T Consensus       143 ~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          143 HPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             CTTSCEEEEE--TTEEE
T ss_pred             CCCceEEEEe--CCcEE
Confidence            9999877666  77754

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=87.98  E-value=34  Score=37.21  Aligned_cols=191  Identities=13%  Similarity=0.078  Sum_probs=106.7

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      .|.++.-..++           .|..|+.+| |..||..+......   .                       ......|
T Consensus        64 ~i~~i~~d~~g-----------~lWigT~~G-l~~yd~~~~~f~~~---~-----------------------~~~~~~i  105 (758)
T 3ott_A           64 RIYCGVIIDNT-----------YLYMGTDNG-ILVYNYRADRYEQP---E-----------------------TDFPTDV  105 (758)
T ss_dssp             CEEEEEEETTT-----------EEEEEETTE-EEEEETTTTEECCC---S-----------------------CCCCSCE
T ss_pred             eEEEEEEcCCC-----------cEEEEeCCC-eEEEeCCCCEEECc---c-----------------------cCCCceE
Confidence            35466666655           677777766 78899877432210   0                       0111234


Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee-----CCCCCeeEEEEccCCCCCCCCcEEEEEcCC
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS-----ADTLPIRAVSWAPAESDSDSANVILTAGHG  256 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-----~h~~~V~~v~~~p~~~~~~~~~~las~s~d  256 (568)
                       .++.-.   +| .|..|+.+ -|..+|..+.      . +..+.     .....|.++....++      .+.+.. .+
T Consensus       106 -~~i~~~---~g-~lWigt~~-Gl~~~~~~~~------~-~~~~~~~~~~l~~~~i~~i~~d~~g------~lWigt-~~  165 (758)
T 3ott_A          106 -RTMALQ---GD-TLWLGALN-GLYTYQLQSR------K-LTSFDTRRNGLPNNTIYSIIRTKDN------QIYVGT-YN  165 (758)
T ss_dssp             -EEEEEE---TT-EEEEEETT-EEEEEETTTC------C-EEEECHHHHCCSCSCEEEEEECTTC------CEEEEE-TT
T ss_pred             -EEEEec---CC-cEEEEcCC-cceeEeCCCC------e-EEEeccCCCCcCCCeEEEEEEcCCC------CEEEEe-CC
Confidence             555422   44 56667766 5778887644      2 22221     113458888888777      565543 45


Q ss_pred             CEEEEECCCCCcceeeeCC----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363          257 GLKFWDIRDPFRPLWDIHP----APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN  332 (568)
Q Consensus       257 ~v~lwD~~~~~~~~~~~~~----h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~  332 (568)
                      ||..+|..+..........    ....|.++...+++..|..|+. +-|..||...        ++.      ..+..+ 
T Consensus       166 Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~--------~~~------~~~~~l-  229 (758)
T 3ott_A          166 GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPST--------GQI------KQTEAF-  229 (758)
T ss_dssp             EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTT--------TEE------EEEEEE-
T ss_pred             CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCC--------CeE------EeccCC-
Confidence            6888887754211111111    1224888888887776666664 4577888732        221      111112 


Q ss_pred             cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363          333 CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV  369 (568)
Q Consensus       333 ~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~  369 (568)
                       ....|.++....+|.+.+. +. +-|.+++..+..+
T Consensus       230 -~~~~i~~i~~d~~g~lWig-T~-~Gl~~~~~~~~~~  263 (758)
T 3ott_A          230 -HNNSIKSLALDGNGDLLAG-TD-NGLYVYHNDTTPL  263 (758)
T ss_dssp             -EEEEEEEEEECTTCCEEEE-ET-TEEEEECCTTSCC
T ss_pred             -CCCeEEEEEEcCCCCEEEE-eC-CceeEEecCCCcE
Confidence             2245788887777765554 44 4578888776544

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=87.55  E-value=20  Score=34.04  Aligned_cols=103  Identities=10%  Similarity=0.048  Sum_probs=51.6

Q ss_pred             CCCEEEEEeCC--------CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-C-----C
Q 008363          192 PHDYLLAGCHD--------GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-G-----G  257 (568)
Q Consensus       192 ~g~~l~sgs~D--------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d-----~  257 (568)
                      ++.+++.|+.+        ..+.+||+.+..+    ..+..+...... .+++. -++      .+++.|+. +     .
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~-~~~~~-~~~------~iyv~GG~~~~~~~~~  165 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKW----GESDPLPYVVYG-HTVLS-HMD------LVYVIGGKGSDRKCLN  165 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEE----EECCCCSSCCBS-CEEEE-ETT------EEEEECCBCTTSCBCC
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcE----eECCCCCCcccc-eeEEE-ECC------EEEEEeCCCCCCcccc
Confidence            45677777742        3588888876633    222111111111 12222 344      57777765 1     3


Q ss_pred             -EEEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEccc
Q 008363          258 -LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDG-----AMRIVSLLK  308 (568)
Q Consensus       258 -v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg-----~I~lwd~~~  308 (568)
                       +.+||+.+.. ..+..+.........+.+  +++.++.|+.++     .+.+||+.+
T Consensus       166 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~  221 (315)
T 4asc_A          166 KMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITD  221 (315)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred             eEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCC
Confidence             8899988653 111111111111122323  567777777644     477888743

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=85.79  E-value=20  Score=34.63  Aligned_cols=27  Identities=4%  Similarity=-0.026  Sum_probs=16.6

Q ss_pred             cCCCEEEEEeCCC------eEEEEEcCCCeeec
Q 008363          345 RLTGMVAYCSADG------TVHRFQLTAKAVEK  371 (568)
Q Consensus       345 p~~~~l~s~s~Dg------~v~iwd~~~~~~~~  371 (568)
                      .++++++.|+.++      .|.++++++.++..
T Consensus       315 ~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~  347 (357)
T 2uvk_A          315 WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTV  347 (357)
T ss_dssp             ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred             eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence            3678888888653      35556776665543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=85.70  E-value=28  Score=33.96  Aligned_cols=150  Identities=9%  Similarity=0.041  Sum_probs=77.4

Q ss_pred             eEEEEccCCCCCEEEEEeC-------------CCeEEEEEccCCCCCCCC--ceeEEeeCCCCCeeEEEEcc-CCCCCCC
Q 008363          183 LTMEWSTSPPHDYLLAGCH-------------DGTVALWKFVASDSSIDS--RPLLCFSADTLPIRAVSWAP-AESDSDS  246 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~-------------Dg~I~iwd~~~~~~~~~~--~~~~~~~~h~~~V~~v~~~p-~~~~~~~  246 (568)
                      ..|.|.  |+|.++++-+.             .|.|.-++....-.....  .......+|.. ...|+|+| .+     
T Consensus       138 ~~l~~~--pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rn-p~Gla~d~~~g-----  209 (354)
T 3a9g_A          138 GRIRFG--PDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRN-PQGIDWHRASG-----  209 (354)
T ss_dssp             CCEEEC--TTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSC-CCEEEECTTTC-----
T ss_pred             ceEEEC--CCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCC-cceEEEeCCCC-----
Confidence            568888  88876666432             245555554321000000  01112234544 56899999 56     


Q ss_pred             CcEEEEEcC-CC---EEEEECCCC---------------CcceeeeCCCCCCeEEEEEc-------CCCCEEEEEeCCCc
Q 008363          247 ANVILTAGH-GG---LKFWDIRDP---------------FRPLWDIHPAPKFIYGLDWL-------PDPGCVILSFDDGA  300 (568)
Q Consensus       247 ~~~las~s~-d~---v~lwD~~~~---------------~~~~~~~~~h~~~i~~l~~s-------p~~~~l~s~~~dg~  300 (568)
                       .++++-.. +.   |.+......               ..++..+.........++|.       .+|.++++....+.
T Consensus       210 -~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~  288 (354)
T 3a9g_A          210 -VMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSM  288 (354)
T ss_dssp             -CEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTE
T ss_pred             -CEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCE
Confidence             66665433 22   443322110               02333331122356788883       46766666556778


Q ss_pred             EEEEEccccccCCCCCCCCccCccccceEEE-ecCCCCEEEEEEecCCCEEEEEe
Q 008363          301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLV-NCSSFAIWSVQVSRLTGMVAYCS  354 (568)
Q Consensus       301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~-~~h~~~V~~l~~sp~~~~l~s~s  354 (568)
                      |...++..       .|+..      ....+ .+....+..+++.|+|.++++..
T Consensus       289 v~~~~~~~-------~g~~~------~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          289 LAAVNFGD-------NMEVR------KISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEEEECG-------GGCEE------EEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             EEEEEECC-------CCccc------ceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            88888742       11110      01122 22245788999999997666654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=83.57  E-value=13  Score=35.93  Aligned_cols=23  Identities=9%  Similarity=0.072  Sum_probs=15.7

Q ss_pred             CCCEEEEEeC-C---------CeEEEEEccCCC
Q 008363          192 PHDYLLAGCH-D---------GTVALWKFVASD  214 (568)
Q Consensus       192 ~g~~l~sgs~-D---------g~I~iwd~~~~~  214 (568)
                      ++.+++.|+. +         ..+.+||+.+..
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~   97 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS   97 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence            4567777765 2         358888888663

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=82.44  E-value=26  Score=37.89  Aligned_cols=160  Identities=9%  Similarity=0.102  Sum_probs=79.2

Q ss_pred             CCCEEEEEeCCC------eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC--C-EEEEE
Q 008363          192 PHDYLLAGCHDG------TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG--G-LKFWD  262 (568)
Q Consensus       192 ~g~~l~sgs~Dg------~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d--~-v~lwD  262 (568)
                      ++.+++.|+.++      .+.+||+.+..+    ..+..+..... -.+++...++      .+++.||.+  + +.+||
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W----~~~~~~p~~R~-~h~~~~~~~~------~iyv~GG~~~~~~v~~yd  519 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREW----SMIKSLSHTRF-RHSACSLPDG------NVLILGGVTEGPAMLLYN  519 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEE----EECCCCSBCCB-SCEEEECTTS------CEEEECCBCSSCSEEEEE
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcE----EECCCCCCCcc-cceEEEEcCC------EEEEECCCCCCCCEEEEE
Confidence            567888887543      477888876533    22211111111 1223332355      688888765  2 89999


Q ss_pred             CCCCCcceee----eCCCCCCeEEEEEcCC-CCEEEEEeC--C-----CcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363          263 IRDPFRPLWD----IHPAPKFIYGLDWLPD-PGCVILSFD--D-----GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL  330 (568)
Q Consensus       263 ~~~~~~~~~~----~~~h~~~i~~l~~sp~-~~~l~s~~~--d-----g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~  330 (568)
                      +.+..-....    +........++.+..+ +..++.||.  +     +.+.+||+..        ...........+..
T Consensus       520 ~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~--------~~w~~~~~W~~~~~  591 (695)
T 2zwa_A          520 VTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA--------ENATEPITVIKKLQ  591 (695)
T ss_dssp             TTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT--------TCSSCCEEEEEEEE
T ss_pred             CCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC--------CccccceEEEEcCC
Confidence            8875311111    1111112233555655 666677765  2     3588899854        21000000011111


Q ss_pred             Ee-cCCCCEEEEEEecCCCEEEEEeCC--------CeEEEEEcCCCeeec
Q 008363          331 VN-CSSFAIWSVQVSRLTGMVAYCSAD--------GTVHRFQLTAKAVEK  371 (568)
Q Consensus       331 ~~-~h~~~V~~l~~sp~~~~l~s~s~D--------g~v~iwd~~~~~~~~  371 (568)
                      .. ...... +++...++.+++.||.+        ..|.+||+.+..+..
T Consensus       592 ~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~  640 (695)
T 2zwa_A          592 HPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTS  640 (695)
T ss_dssp             CGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEE
T ss_pred             CCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEE
Confidence            10 111111 22233336777777743        468999998887763

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=81.92  E-value=35  Score=32.24  Aligned_cols=103  Identities=10%  Similarity=0.007  Sum_probs=49.8

Q ss_pred             CCCEEEEEeCC-------CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC------CC-
Q 008363          192 PHDYLLAGCHD-------GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH------GG-  257 (568)
Q Consensus       192 ~g~~l~sgs~D-------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~------d~-  257 (568)
                      ++.+++.|+.+       ..+.+||+.+..+    ..+..+...... .+++. .++      .+++.|+.      -. 
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~-~~~~~-~~~------~iyv~GG~~~~~~~~~~  176 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKW----SEVKNLPIKVYG-HNVIS-HNG------MIYCLGGKTDDKKCTNR  176 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEE----EEECCCSSCEES-CEEEE-ETT------EEEEECCEESSSCBCCC
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCE----eECCCCCCcccc-cEEEE-ECC------EEEEEcCCCCCCCccce
Confidence            45677888754       2477888876533    111111100001 12222 344      57777653      13 


Q ss_pred             EEEEECCCCCc-ceeeeCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEccc
Q 008363          258 LKFWDIRDPFR-PLWDIHPAPKFIYGLDWLPDPGCVILSFDD-----GAMRIVSLLK  308 (568)
Q Consensus       258 v~lwD~~~~~~-~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d-----g~I~lwd~~~  308 (568)
                      +.+||+.+..- .+..+.........+.+  ++..++.|+.+     ..+.+||+..
T Consensus       177 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~  231 (318)
T 2woz_A          177 VFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKT  231 (318)
T ss_dssp             EEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred             EEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCC
Confidence            88999886531 11111111111122222  56777777653     3467788743

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=80.74  E-value=15  Score=39.63  Aligned_cols=152  Identities=12%  Similarity=0.082  Sum_probs=77.4

Q ss_pred             CCCEEEEEeCC----CeEEEEEccCCCCCCCCceeE-Eee----CCCCCeeEEEEcc-CCCCCCCCcEEEEEcCC-----
Q 008363          192 PHDYLLAGCHD----GTVALWKFVASDSSIDSRPLL-CFS----ADTLPIRAVSWAP-AESDSDSANVILTAGHG-----  256 (568)
Q Consensus       192 ~g~~l~sgs~D----g~I~iwd~~~~~~~~~~~~~~-~~~----~h~~~V~~v~~~p-~~~~~~~~~~las~s~d-----  256 (568)
                      ++.+++.|+.+    ..+.+||..+..+    ..+. .+.    .....-.+++..+ ++      .+++.||.+     
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W----~~~~~~~p~~~~p~~R~~hs~~~~~~~~------~lyv~GG~~~~~~~  466 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKI----DMKNIEVSSSEVPVARMCHTFTTISRNN------QLLLIGGRKAPHQG  466 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCE----EEEECCCCCSCCCCCCBSCEEEEETTTT------EEEEECCBSSTTCB
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeE----EEeccCCCCCCCCccccceEEEEEccCC------EEEEEcCCCCCCCc
Confidence            45677888754    3588888886633    2222 100    0111122333333 55      677777642     


Q ss_pred             -C-EEEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEEccccccCCCCCCCCccCccccceEE-
Q 008363          257 -G-LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDG--AMRIVSLLKAAYDVPATGKPFAGTKQQGLHL-  330 (568)
Q Consensus       257 -~-v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg--~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~-  330 (568)
                       . +.+||+.+.. ..+..+. ....-.+++...++..++.||.++  .+.+||+....        .      ..+.. 
T Consensus       467 ~~dv~~yd~~t~~W~~~~~~p-~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~--------W------~~~~~~  531 (695)
T 2zwa_A          467 LSDNWIFDMKTREWSMIKSLS-HTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI--------F------KDVTPK  531 (695)
T ss_dssp             CCCCEEEETTTTEEEECCCCS-BCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE--------E------EECCCS
T ss_pred             cccEEEEeCCCCcEEECCCCC-CCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc--------e------EEccCC
Confidence             3 7889988642 1111111 111112333434788888887644  78899985411        1      00000 


Q ss_pred             --EecCCCCEEEEEEecC-CCEEEEEeC--C-----CeEEEEEcCCCe
Q 008363          331 --VNCSSFAIWSVQVSRL-TGMVAYCSA--D-----GTVHRFQLTAKA  368 (568)
Q Consensus       331 --~~~h~~~V~~l~~sp~-~~~l~s~s~--D-----g~v~iwd~~~~~  368 (568)
                        +........++.+... +.+++.|+.  +     ..+.+||+.+..
T Consensus       532 g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          532 DEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             SGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence              0101111123445555 567777765  2     458899988766

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=80.47  E-value=18  Score=42.16  Aligned_cols=103  Identities=13%  Similarity=0.173  Sum_probs=71.9

Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcce
Q 008363          191 PPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPL  270 (568)
Q Consensus       191 ~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~  270 (568)
                      |....||.=. ..++.|+|+.+.      ..+..+.- ...|.--.|-..       +.|+-.+...|.-|++.+...|+
T Consensus        75 P~~~iiALra-g~~lQiFnl~~k------~klks~~~-~e~VvfWkWis~-------~~l~lVT~~aVyHW~~~~~s~P~  139 (1630)
T 1xi4_A           75 PASKVIALKA-GKTLQIFNIEMK------SKMKAHTM-TDDVTFWKWISL-------NTVALVTDNAVYHWSMEGESQPV  139 (1630)
T ss_pred             CCcceEEEec-CCeEEEeehHHh------hhhccccc-CCCceEEEecCC-------CeeEEEcCCeEEEeccCCCCccH
Confidence            4555666554 679999999876      44554433 345666677666       47888877779999998655676


Q ss_pred             eeeCCC----CCCeEEEEEcCCCCEEEEEeC-------CCcEEEEEccc
Q 008363          271 WDIHPA----PKFIYGLDWLPDPGCVILSFD-------DGAMRIVSLLK  308 (568)
Q Consensus       271 ~~~~~h----~~~i~~l~~sp~~~~l~s~~~-------dg~I~lwd~~~  308 (568)
                      ..+..|    ...|..-..+++.++++..|-       .|.+.+|....
T Consensus       140 k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er  188 (1630)
T 1xi4_A          140 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR  188 (1630)
T ss_pred             HHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc
Confidence            556554    445777778899998886532       57889998854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	568
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.002
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.004

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 1e-06
 Identities = 35/219 (15%), Positives = 66/219 (30%), Gaps = 19/219 (8%)

Query: 187 WSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA-ESDSD 245
           +S S  + + ++   DG + +W     D+                +  V    A E D+ 
Sbjct: 18  FSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAF 77

Query: 246 SANVILTAGHGG-LKFWDIRDP---------FRPLWDIHPAPKFIYGLDWLPDPGCVILS 295
              ++ T    G L F+ I               L D        + L W      ++  
Sbjct: 78  ELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSH 137

Query: 296 F-----DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC--SSFAIWSVQVSRLTG 348
                   G   I      A +  +    ++ T +    + +    S    SV +S   G
Sbjct: 138 RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG 196

Query: 349 MVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVT 387
           ++A    +GTV   +L+      +      M     S+ 
Sbjct: 197 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 235

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.7 bits (109), Expect = 4e-06
 Identities = 24/178 (13%), Positives = 47/178 (26%), Gaps = 30/178 (16%)

Query: 185 MEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDS 244
           M  S +P     ++G  D +  LW         +      F+     I A+ + P     
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLW------DVREGMCRQTFTGHESDINAICFFP----- 236

Query: 245 DSANVILTAGHGG--LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMR 302
            + N   T         F    D     +        I  + +      ++  +DD    
Sbjct: 237 -NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295

Query: 303 IVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVH 360
           +       +D                 ++      +  + V+     VA  S D  + 
Sbjct: 296 V-------WDAL-KADR--------AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 18/115 (15%), Positives = 30/115 (26%), Gaps = 12/115 (10%)

Query: 190 SPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV 249
            P  +    G  D T  L+   A    +              I +VS++       S  +
Sbjct: 235 FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC----GITSVSFSK------SGRL 284

Query: 250 ILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRI 303
           +L          WD          +      +  L    D   V     D  ++I
Sbjct: 285 LLAGYDDFNCNVWDALK-ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 13/74 (17%)

Query: 190 SPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV 249
           S     LLAG  D    +W       ++ +      +     +  +              
Sbjct: 279 SKSGRLLLAGYDDFNCNVW------DALKADRAGVLAGHDNRVSCLGVTD------DGMA 326

Query: 250 ILTAGHGG-LKFWD 262
           + T      LK W+
Sbjct: 327 VATGSWDSFLKIWN 340

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.9 bits (107), Expect = 8e-06
 Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 7/78 (8%)

Query: 188 STSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA 247
           +T+   +Y+L+G  D  V  W            PLL        + +V+ A   S     
Sbjct: 315 ATTQNDEYILSGSKDRGVLFWDKK------SGNPLLMLQGHRNSVISVAVANGSSLGPEY 368

Query: 248 NVILTAGH-GGLKFWDIR 264
           NV  T       + W  +
Sbjct: 369 NVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 37/324 (11%), Positives = 79/324 (24%), Gaps = 35/324 (10%)

Query: 58  GSERDSAVCDVLGDFLSKPSLVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYN----A 113
           G  + + V  V    L           KD          + +  +   V + P       
Sbjct: 80  GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI-RSVCFSPDGKFLAT 138

Query: 114 VDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML 173
                  R+  +        L+  E  +           +  G+  R V++  +      
Sbjct: 139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS 198

Query: 174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSID-SRPLLCFSADTLPI 232
                +    T+  S      Y+ AG  D  V +W                  +     +
Sbjct: 199 LTLSIEDGVTTVAVS-PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 257

Query: 233 RAVSWAPAE------SDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWL 286
            +V +          S   S  +               +             F+  +   
Sbjct: 258 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT 317

Query: 287 PDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL 346
            +   ++    D  +         +D   +G P        L ++     ++ SV V+  
Sbjct: 318 QNDEYILSGSKDRGVLF-------WDKK-SGNP--------LLMLQGHRNSVISVAVANG 361

Query: 347 T------GMVAYCSADGTVHRFQL 364
           +       + A  S D     ++ 
Sbjct: 362 SSLGPEYNVFATGSGDCKARIWKY 385

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 29/193 (15%), Positives = 58/193 (30%), Gaps = 26/193 (13%)

Query: 167 VFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS 226
           V+      C  T        +S      ++++G  D ++ +W             +   +
Sbjct: 161 VWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE------TGNCIHTLT 214

Query: 227 ADTLPIRAVSWAPAESDSDSANVILTA-GHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDW 285
                   +            N++++      +K WDI+          P          
Sbjct: 215 GHQSLTSGMELKD--------NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL 266

Query: 286 LPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSR 345
             +   VI S DDG +++  L         TG+     +         S   +W ++ S 
Sbjct: 267 QFNKNFVITSSDDGTVKLWDL--------KTGEFI---RNLVTLESGGSGGVVWRIRASN 315

Query: 346 LTGMVAYCSADGT 358
              + A  S +GT
Sbjct: 316 TKLVCAVGSRNGT 328

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 23/188 (12%), Positives = 57/188 (30%), Gaps = 26/188 (13%)

Query: 185 MEWSTSPPHDYLLAGCHDGTVALW---------KFVASDSSIDSRPLLCFSADTLPIRAV 235
                +     + +  +D TV +W         +       ++       S+ +    A 
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206

Query: 236 SWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS 295
                +S      ++  +    +K WD+      L  +     ++ G+ +      ++  
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWVRGVLFHSGGKFILSC 265

Query: 296 FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSA 355
            DD  +R+       +D     +         +  +N     + S+   +    V   S 
Sbjct: 266 ADDKTLRV-------WDYK-NKRC--------MKTLNAHEHFVTSLDFHKTAPYVVTGSV 309

Query: 356 DGTVHRFQ 363
           D TV  ++
Sbjct: 310 DQTVKVWE 317

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 21/195 (10%), Positives = 47/195 (24%), Gaps = 22/195 (11%)

Query: 190 SPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV 249
           +     +    ++  V +++     S      +         +  V WAP       +N 
Sbjct: 16  NKDRTQIAICPNNHEVHIYEK----SGNKWVQVHELKEHNGQVTGVDWAP------DSNR 65

Query: 250 ILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK 308
           I+T G       W ++        +                           +  +   +
Sbjct: 66  IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 309 AAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA 368
              D                H+       + S+     + ++A  S D     F    K 
Sbjct: 126 QEND-----------WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE 174

Query: 369 VEKDHSRNRPMHFLC 383
           VE+  +       + 
Sbjct: 175 VEERPAPTPWGSKMP 189

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	568
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.96
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.95
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.94
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.94
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.94
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.94
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.92
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.92
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.91
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.91
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.9
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.9
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.9
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.9
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.89
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.88
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.85
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.82
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.82
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.81
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.76
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.73
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.7
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.67
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.66
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.64
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.62
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.62
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.59
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.57
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.56
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.43
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.34
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.31
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.14
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.1
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.08
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.02
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.99
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.79
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.78
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.75
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.72
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.71
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.6
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.4
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.39
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.38
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.34
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.3
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.3
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.29
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.29
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.1
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.06
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.98
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.91
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.64
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.5
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.44
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.39
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.13
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.87
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.83
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.41
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.54
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.55
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	93.32
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	92.41
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	92.11
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.76
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	89.82
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	88.3
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	86.48
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	86.18
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	85.13
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	84.45
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	83.85
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	80.48
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	80.26

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.7e-31  Score=256.34  Aligned_cols=234  Identities=15%  Similarity=0.231  Sum_probs=199.6

Q ss_pred             EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-------------------
Q 008363           93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-------------------  153 (568)
Q Consensus        93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-------------------  153 (568)
                      ..+.+|.+ .|++|+|+|++          .+||+|+.||+|+|||+.+++.+..+.+|..                   
T Consensus        11 ~~L~GH~~-~I~~l~~sp~~----------~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~   79 (317)
T d1vyhc1          11 YALSGHRS-PVTRVIFHPVF----------SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA   79 (317)
T ss_dssp             CEEECCSS-CEEEEEECSSS----------SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEcCCCC-CeEEEEEcCCC----------CEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccc
Confidence            44679999 55599999999          7999999999999999999888888766543                   


Q ss_pred             -------------------------------------ccCCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCC
Q 008363          154 -------------------------------------KEGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHD  194 (568)
Q Consensus       154 -------------------------------------~~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~  194 (568)
                                                           +.++.+..+.+|+...  ....+.+|...+ .+++|+  +++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~  156 (317)
T d1vyhc1          80 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV-RMVRPN--QDGT  156 (317)
T ss_dssp             TSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE-EEEEEC--TTSS
T ss_pred             ccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcc-eeeecc--cCCC
Confidence                                                 2344566677777654  444567888888 999999  8899


Q ss_pred             EEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCC--------------CCCCCcEEEEEcCCC-EE
Q 008363          195 YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAES--------------DSDSANVILTAGHGG-LK  259 (568)
Q Consensus       195 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~--------------~~~~~~~las~s~d~-v~  259 (568)
                      +|++|+.||.|++|++...      ..+..+.+|...+.+++|+|...              ......++++++.|+ |+
T Consensus       157 ~l~~~~~d~~v~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  230 (317)
T d1vyhc1         157 LIASCSNDQTVRVWVVATK------ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK  230 (317)
T ss_dssp             EEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred             EEEEEeCCCeEEEEeeccc------eeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEE
Confidence            9999999999999999976      78888999999999999998751              011235789999999 99


Q ss_pred             EEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEE
Q 008363          260 FWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIW  339 (568)
Q Consensus       260 lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~  339 (568)
                      +||++++ .++..+.+|...|++++|+|++++|++++.||.|+|||+++        +++        +..+.+|...|+
T Consensus       231 ~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~--------~~~--------~~~~~~h~~~V~  293 (317)
T d1vyhc1         231 MWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN--------KRC--------MKTLNAHEHFVT  293 (317)
T ss_dssp             EEETTTT-EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT--------SCC--------CEEEECCSSCEE
T ss_pred             EEECCCC-cEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCC--------CcE--------EEEEcCCCCCEE
Confidence            9999987 88889999999999999999999999999999999999953        544        468999999999


Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEE
Q 008363          340 SVQVSRLTGMVAYCSADGTVHRFQ  363 (568)
Q Consensus       340 ~l~~sp~~~~l~s~s~Dg~v~iwd  363 (568)
                      +++|+|++++|++|+.||+|+|||
T Consensus       294 ~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         294 SLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEeC
Confidence            999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1.9e-30  Score=257.29  Aligned_cols=250  Identities=12%  Similarity=0.099  Sum_probs=194.3

Q ss_pred             EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363           94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML  173 (568)
Q Consensus        94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~  173 (568)
                      .+.+|.+ .|.+++|+|++          ++||+|+.||+|+|||+.++......                        .
T Consensus        53 ~~~~H~~-~v~~~~~sp~g----------~~latg~~dg~i~iwd~~~~~~~~~~------------------------~   97 (311)
T d1nr0a1          53 IYTEHSH-QTTVAKTSPSG----------YYCASGDVHGNVRIWDTTQTTHILKT------------------------T   97 (311)
T ss_dssp             EECCCSS-CEEEEEECTTS----------SEEEEEETTSEEEEEESSSTTCCEEE------------------------E
T ss_pred             EEcCCCC-CEEEEEEeCCC----------CeEeccccCceEeeeeeecccccccc------------------------c
Confidence            4568988 45599999999          89999999999999999986544221                        0


Q ss_pred             ccCCcCccceEEEEccCCCCCEEEEEeC--CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363          174 KCGGTQSIPLTMEWSTSPPHDYLLAGCH--DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL  251 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la  251 (568)
                      +.+|...| .+++|+  +++.+|++++.  +..++||++.+.      +....+.+|...|++++|+|++     +.+|+
T Consensus        98 ~~~~~~~v-~~v~~s--~d~~~l~~~~~~~~~~~~v~~~~~~------~~~~~l~~h~~~v~~v~~~~~~-----~~~l~  163 (311)
T d1nr0a1          98 IPVFSGPV-KDISWD--SESKRIAAVGEGRERFGHVFLFDTG------TSNGNLTGQARAMNSVDFKPSR-----PFRII  163 (311)
T ss_dssp             EECSSSCE-EEEEEC--TTSCEEEEEECCSSCSEEEEETTTC------CBCBCCCCCSSCEEEEEECSSS-----SCEEE
T ss_pred             cccccCcc-cccccc--ccccccccccccccccccccccccc------cccccccccccccccccccccc-----eeeec
Confidence            16788899 999999  88999999986  456999999876      6677788999999999999998     25689


Q ss_pred             EEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363          252 TAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL  330 (568)
Q Consensus       252 s~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~  330 (568)
                      +|+.|+ |++||+++. .....+..|...|+++.|+|++++|++++.|+.|++||++.        +..+.... .....
T Consensus       164 sgs~d~~i~i~d~~~~-~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~--------~~~~~~~~-~~~~~  233 (311)
T d1nr0a1         164 SGSDDNTVAIFEGPPF-KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD--------GTKTGVFE-DDSLK  233 (311)
T ss_dssp             EEETTSCEEEEETTTB-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------CCEEEECB-CTTSS
T ss_pred             cccccccccccccccc-ccccccccccccccccccCcccccccccccccccccccccc--------cccccccc-ccccc
Confidence            999999 999999987 77888889999999999999999999999999999999954        22210000 00112


Q ss_pred             EecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccCCCC
Q 008363          331 VNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNT  402 (568)
Q Consensus       331 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~  402 (568)
                      ..+|...|++++|+|++.+|++|+.||.|+|||+.+++..+...........+.++...+..+.+++..+.+
T Consensus       234 ~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i  305 (311)
T d1nr0a1         234 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI  305 (311)
T ss_dssp             SCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCE
T ss_pred             cccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEE
Confidence            347899999999999999999999999999999999887665332222122222344445556555544433

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=3.8e-29  Score=248.12  Aligned_cols=228  Identities=17%  Similarity=0.209  Sum_probs=185.9

Q ss_pred             EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCC
Q 008363           93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTD  158 (568)
Q Consensus        93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~  158 (568)
                      ..+.+|.+ .|++|+|+|++          .+||+|+.||+|+|||+.+++.+..+..|..              +.++.
T Consensus        49 ~tL~GH~~-~I~~l~~s~~~----------~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~  117 (340)
T d1tbga_          49 RTLRGHLA-KIYAMHWGTDS----------RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL  117 (340)
T ss_dssp             EEECCCSS-CEEEEEECTTS----------SEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEET
T ss_pred             EEECCCCC-CEEEEEECCCC----------CEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecc
Confidence            34679999 55599999999          7999999999999999999998888877654              23445


Q ss_pred             CceEEEeeccee------ccc-----------------------------------------ccCCcCccceEEEEccCC
Q 008363          159 PRFVKLEPVFRC------SML-----------------------------------------KCGGTQSIPLTMEWSTSP  191 (568)
Q Consensus       159 ~~~v~~~~~~~~------~~~-----------------------------------------~~~h~~~V~~~v~~s~~~  191 (568)
                      +..+.+|.....      ...                                         ...+...+ ....+.  +
T Consensus       118 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~  194 (340)
T d1tbga_         118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV-MSLSLA--P  194 (340)
T ss_dssp             TCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCE-EEEEEC--T
T ss_pred             cceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeE-eeeccc--c
Confidence            555555543220      001                                         11122333 445555  6


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcce
Q 008363          192 PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPL  270 (568)
Q Consensus       192 ~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~  270 (568)
                      .+.++++|+.|+.|++||+++.      .++..+.+|...|++++|+|++      .+|++|+.|+ |++||++.. ..+
T Consensus       195 ~~~~~~~~~~d~~v~i~d~~~~------~~~~~~~~h~~~i~~v~~~p~~------~~l~s~s~d~~i~~~~~~~~-~~~  261 (340)
T d1tbga_         195 DTRLFVSGACDASAKLWDVREG------MCRQTFTGHESDINAICFFPNG------NAFATGSDDATCRLFDLRAD-QEL  261 (340)
T ss_dssp             TSSEEEEEETTTEEEEEETTTT------EEEEEECCCSSCEEEEEECTTS------SEEEEEETTSCEEEEETTTT-EEE
T ss_pred             ccceeEEeecCceEEEEECCCC------cEEEEEeCCCCCeEEEEECCCC------CEEEEEeCCCeEEEEeeccc-ccc
Confidence            6789999999999999999876      8889999999999999999998      8999999999 999999977 554


Q ss_pred             ee--eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCC
Q 008363          271 WD--IHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG  348 (568)
Q Consensus       271 ~~--~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~  348 (568)
                      ..  ...+...|++++|+|++++|++|+.||.|++||+.+        ++        ++..+.+|..+|++++|+|++.
T Consensus       262 ~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~--------~~--------~~~~~~~H~~~V~~l~~s~d~~  325 (340)
T d1tbga_         262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK--------AD--------RAGVLAGHDNRVSCLGVTDDGM  325 (340)
T ss_dssp             EEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTT--------CC--------EEEEECCCSSCEEEEEECTTSS
T ss_pred             cccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCC--------Cc--------EEEEEcCCCCCEEEEEEeCCCC
Confidence            43  346677899999999999999999999999999943        43        3578999999999999999999


Q ss_pred             EEEEEeCCCeEEEEE
Q 008363          349 MVAYCSADGTVHRFQ  363 (568)
Q Consensus       349 ~l~s~s~Dg~v~iwd  363 (568)
                      +|++|+.||.|+|||
T Consensus       326 ~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         326 AVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEETTSCEEEEC
T ss_pred             EEEEEccCCEEEEeC
Confidence            999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-28  Score=247.15  Aligned_cols=266  Identities=13%  Similarity=0.198  Sum_probs=215.0

Q ss_pred             cceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCcee---eEE--eccCC----------
Q 008363           89 LPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTM---KAI--YLSSM----------  153 (568)
Q Consensus        89 ~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~---~~l--~~~~~----------  153 (568)
                      ..+.+..+.|.. .|.+|+|+|++          .+||+|+ ||.|+|||+.++...   ..+  ..|..          
T Consensus        41 ~~~~~~~~~H~~-~V~~v~fs~~g----------~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~d  108 (337)
T d1gxra_          41 HARQINTLNHGE-VVCAVTISNPT----------RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD  108 (337)
T ss_dssp             EEEEEEEECCSS-CCCEEEECSSS----------SEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT
T ss_pred             CceEEEECCCCC-cEEEEEECCCC----------CEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCC
Confidence            345566778998 55699999999          7999987 899999999764321   111  12221          


Q ss_pred             ----ccCCCCceEEEeecce----ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe
Q 008363          154 ----KEGTDPRFVKLEPVFR----CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF  225 (568)
Q Consensus       154 ----~~~~~~~~v~~~~~~~----~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~  225 (568)
                          +.++.++.+++|+...    +.....+|...+ .++.|+  +++.++++++.|+.|++|++.+.      .+....
T Consensus       109 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~~~~~~--~~~~~l~s~~~d~~i~~~~~~~~------~~~~~~  179 (337)
T d1gxra_         109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC-YALAIS--PDSKVCFSCCSDGNIAVWDLHNQ------TLVRQF  179 (337)
T ss_dssp             SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCE-EEEEEC--TTSSEEEEEETTSCEEEEETTTT------EEEEEE
T ss_pred             CCEEEEeecccccccccccccccccccccccccccc-cccccc--ccccccccccccccccccccccc------cccccc
Confidence                5677889999998654    344556888888 999999  88999999999999999999876      778888


Q ss_pred             eCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 008363          226 SADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIV  304 (568)
Q Consensus       226 ~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lw  304 (568)
                      .+|...|.+++|++++      .++++++.|+ |++||+++. ..+..+ .|...|++++|+|++.+|++++.|+.|++|
T Consensus       180 ~~~~~~v~~l~~s~~~------~~~~~~~~d~~v~i~d~~~~-~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~  251 (337)
T d1gxra_         180 QGHTDGASCIDISNDG------TKLWTGGLDNTVRSWDLREG-RQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVL  251 (337)
T ss_dssp             CCCSSCEEEEEECTTS------SEEEEEETTSEEEEEETTTT-EEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cccccccccccccccc------cccccccccccccccccccc-eeeccc-ccccceEEEEEcccccccceeccccccccc
Confidence            8999999999999998      8999999999 999999987 666555 578899999999999999999999999999


Q ss_pred             EccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeee
Q 008363          305 SLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCG  384 (568)
Q Consensus       305 d~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  384 (568)
                      |++.        ++         ......|...|++++|+|++++|++++.||.|++||+.++........  .....+.
T Consensus       252 d~~~--------~~---------~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~--~~~v~~~  312 (337)
T d1gxra_         252 HVNK--------PD---------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE--SSSVLSC  312 (337)
T ss_dssp             ETTS--------SC---------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--SSCEEEE
T ss_pred             cccc--------cc---------cccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccC--CCCEEEE
Confidence            9954        22         235678999999999999999999999999999999988766544222  1234556


Q ss_pred             cccCCCCceEEcccCCCC
Q 008363          385 SVTEDESAITVNTPLDNT  402 (568)
Q Consensus       385 s~~~~~~~i~~~~~~~~~  402 (568)
                      ++++++..|++++....+
T Consensus       313 ~~s~d~~~l~t~s~D~~I  330 (337)
T d1gxra_         313 DISVDDKYIVTGSGDKKA  330 (337)
T ss_dssp             EECTTSCEEEEEETTSCE
T ss_pred             EEeCCCCEEEEEeCCCeE
Confidence            788888888877655444

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=9.2e-29  Score=251.03  Aligned_cols=246  Identities=15%  Similarity=0.171  Sum_probs=191.8

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCce--eeEEeccCCccCCCCceEEEeecceecccccCCcC
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRT--MKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ  179 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~--~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~  179 (568)
                      +|.+++|+|++          .+||+|+.||.|+|||+.+++.  +..+                          .+|..
T Consensus         9 pIt~~~~s~dg----------~~la~~~~~~~i~iw~~~~~~~~~~~~l--------------------------~gH~~   52 (371)
T d1k8kc_           9 PISCHAWNKDR----------TQIAICPNNHEVHIYEKSGNKWVQVHEL--------------------------KEHNG   52 (371)
T ss_dssp             CCCEEEECTTS----------SEEEEECSSSEEEEEEEETTEEEEEEEE--------------------------ECCSS
T ss_pred             CeEEEEECCCC----------CEEEEEeCCCEEEEEECCCCCEEEEEEe--------------------------cCCCC
Confidence            56699999999          8999999999999999987543  3333                          78999


Q ss_pred             ccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-E
Q 008363          180 SIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-L  258 (568)
Q Consensus       180 ~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v  258 (568)
                      .| .+|+|+  |++++|++|+.|++|+|||+....    ..+...+.+|...|.+++|+|++      ++|++++.|+ |
T Consensus        53 ~V-~~l~fs--p~~~~l~s~s~D~~i~vWd~~~~~----~~~~~~~~~~~~~v~~i~~~p~~------~~l~~~s~d~~i  119 (371)
T d1k8kc_          53 QV-TGVDWA--PDSNRIVTCGTDRNAYVWTLKGRT----WKPTLVILRINRAARCVRWAPNE------KKFAVGSGSRVI  119 (371)
T ss_dssp             CE-EEEEEE--TTTTEEEEEETTSCEEEEEEETTE----EEEEEECCCCSSCEEEEEECTTS------SEEEEEETTSSE
T ss_pred             CE-EEEEEC--CCCCEEEEEECCCeEEEEeecccc----ccccccccccccccccccccccc------ccceeecccCcc
Confidence            99 999999  889999999999999999998662    24556677899999999999998      8999999998 9


Q ss_pred             EEEECCCCCcc---eeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCc--cCccccceEEEec
Q 008363          259 KFWDIRDPFRP---LWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPF--AGTKQQGLHLVNC  333 (568)
Q Consensus       259 ~lwD~~~~~~~---~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~--~~~~~~~l~~~~~  333 (568)
                      ++|++......   ......|...|.+++|+|++++|++|+.|++|++||+..............  .......+....+
T Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (371)
T d1k8kc_         120 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS  199 (371)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC
T ss_pred             eeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccC
Confidence            99998766321   244567899999999999999999999999999999864321110000000  0001133456678


Q ss_pred             CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363          334 SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNT  397 (568)
Q Consensus       334 h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~  397 (568)
                      |...|.+++|+|++.+|++++.|+.|++||+.++........+..+ +.+..+++++..++.+.
T Consensus       200 ~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~s~~fs~d~~~la~g~  262 (371)
T d1k8kc_         200 SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP-LLAVTFITESSLVAAGH  262 (371)
T ss_dssp             CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCC-EEEEEEEETTEEEEEET
T ss_pred             ccCcEEEEEeecccccccccccCCcceEEeeecccceeeeeccccc-ceeeeecCCCCEEEEEc
Confidence            9999999999999999999999999999999887655543333333 44556778877666543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.9e-28  Score=242.85  Aligned_cols=225  Identities=15%  Similarity=0.157  Sum_probs=188.4

Q ss_pred             EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC--CceeeEEeccCC--------------ccCC
Q 008363           94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL--LRTMKAIYLSSM--------------KEGT  157 (568)
Q Consensus        94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~--~~~~~~l~~~~~--------------~~~~  157 (568)
                      ...+|.+ .|.+++|+|++          .+|++|+.||.|+|||+..  +.....+..+..              +.++
T Consensus        92 ~~~~h~~-~I~~v~~s~dg----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  160 (337)
T d1gxra_          92 DCLNRDN-YIRSCKLLPDG----------CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC  160 (337)
T ss_dssp             ECSCTTS-BEEEEEECTTS----------SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred             eecCCCC-cEEEEEEcCCC----------CEEEEeecccccccccccccccccccccccccccccccccccccccccccc
Confidence            3457888 55699999999          7999999999999999875  344444544433              4456


Q ss_pred             CCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEE
Q 008363          158 DPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAV  235 (568)
Q Consensus       158 ~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v  235 (568)
                      .+..+.+|+...  +.....+|...| .+++|+  +++..+++|+.||.|++||++++      +.+..+ .|...|.++
T Consensus       161 ~d~~i~~~~~~~~~~~~~~~~~~~~v-~~l~~s--~~~~~~~~~~~d~~v~i~d~~~~------~~~~~~-~~~~~i~~l  230 (337)
T d1gxra_         161 SDGNIAVWDLHNQTLVRQFQGHTDGA-SCIDIS--NDGTKLWTGGLDNTVRSWDLREG------RQLQQH-DFTSQIFSL  230 (337)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCE-EEEEEC--TTSSEEEEEETTSEEEEEETTTT------EEEEEE-ECSSCEEEE
T ss_pred             cccccccccccccccccccccccccc-cccccc--ccccccccccccccccccccccc------eeeccc-ccccceEEE
Confidence            777888887665  455667899999 999999  88999999999999999999876      666666 588999999


Q ss_pred             EEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCC
Q 008363          236 SWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVP  314 (568)
Q Consensus       236 ~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~  314 (568)
                      +|+|++      .+|++++.|+ |++||++.. . ......|...|++++|+|++++|++++.||.|++||+..      
T Consensus       231 ~~~~~~------~~l~~~~~d~~i~i~d~~~~-~-~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~------  296 (337)
T d1gxra_         231 GYCPTG------EWLAVGMESSNVEVLHVNKP-D-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY------  296 (337)
T ss_dssp             EECTTS------SEEEEEETTSCEEEEETTSS-C-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT------
T ss_pred             EEcccc------cccceecccccccccccccc-c-cccccccccccceEEECCCCCEEEEEeCCCeEEEEECCC------
Confidence            999998      8999999999 999999976 3 335668899999999999999999999999999999943      


Q ss_pred             CCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          315 ATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       315 ~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                        ++.+        .. ..|...|++++|+|++++|++|+.||+|+|||+
T Consensus       297 --~~~~--------~~-~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         297 --GASI--------FQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             --CCEE--------EE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             --CCEE--------EE-ccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence              5443        34 358899999999999999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.1e-27  Score=243.13  Aligned_cols=279  Identities=16%  Similarity=0.164  Sum_probs=204.8

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------------
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------------  153 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------------  153 (568)
                      +...++|.+ .|++|+|+|+|          .+||+|+ |++|+|||+.+++.+..+..+..                  
T Consensus        55 l~~~~~H~~-~V~~l~fs~dg----------~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (388)
T d1erja_          55 LHKSLDHTS-VVCCVKFSNDG----------EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL  122 (388)
T ss_dssp             EEEEEECSS-CCCEEEECTTS----------SEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCC
T ss_pred             eEeeCCCCC-cEEEEEECCCC----------CEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCC
Confidence            344568998 56699999999          7999986 89999999999887766643321                  


Q ss_pred             --------------ccCCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCC
Q 008363          154 --------------KEGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSI  217 (568)
Q Consensus       154 --------------~~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~  217 (568)
                                    +.++.++.+++|+...  ......+|...| .+++|+  +++..+++|+.+|.|++||+...    
T Consensus       123 ~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v-~~~~~~--~~~~~~~~~~~~~~i~~~d~~~~----  195 (388)
T d1erja_         123 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI-YSLDYF--PSGDKLVSGSGDRTVRIWDLRTG----  195 (388)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE-EEEEEC--TTSSEEEEEETTSEEEEEETTTT----
T ss_pred             CEEEEEECCCCCcceecccccccccccccccccccccccccccc-cccccc--cccccccccccceeeeeeecccc----
Confidence                          4567888899998765  455667899999 999999  78899999999999999999865    


Q ss_pred             CCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceee-------eCCCCCCeEEEEEcCCC
Q 008363          218 DSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWD-------IHPAPKFIYGLDWLPDP  289 (568)
Q Consensus       218 ~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~-------~~~h~~~i~~l~~sp~~  289 (568)
                        ........+.. ..++.|.+..     +.+|++++.|+ |++||+++. ..+..       ..+|...|++++|+|++
T Consensus       196 --~~~~~~~~~~~-~~~~~~~~~~-----~~~l~~~~~d~~i~i~~~~~~-~~~~~~~~~~~~~~~h~~~v~~l~~s~~~  266 (388)
T d1erja_         196 --QCSLTLSIEDG-VTTVAVSPGD-----GKYIAAGSLDRAVRVWDSETG-FLVERLDSENESGTGHKDSVYSVVFTRDG  266 (388)
T ss_dssp             --EEEEEEECSSC-EEEEEECSTT-----CCEEEEEETTSCEEEEETTTC-CEEEEEC------CCCSSCEEEEEECTTS
T ss_pred             --ccccccccccc-cccccccCCC-----CCeEEEEcCCCeEEEeecccC-ccceeeccccccccCCCCCEEEEEECCCC
Confidence              55665555444 5556666543     28999999999 999999977 33322       34688999999999999


Q ss_pred             CEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363          290 GCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV  369 (568)
Q Consensus       290 ~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~  369 (568)
                      ++|++++.||.|++||++......    .........+......|...|++++|+|++.+|++|+.||.|++||+.+++.
T Consensus       267 ~~l~s~~~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~  342 (388)
T d1erja_         267 QSVVSGSLDRSVKLWNLQNANNKS----DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP  342 (388)
T ss_dssp             SEEEEEETTSEEEEEEC-------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE
T ss_pred             CEEEEEECCCcEEEEeccCCcccc----ccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE
Confidence            999999999999999997543210    0000011133456778999999999999999999999999999999998876


Q ss_pred             eccCCCCCcceee-----eecccCCCCceEEcccCCCC
Q 008363          370 EKDHSRNRPMHFL-----CGSVTEDESAITVNTPLDNT  402 (568)
Q Consensus       370 ~~~~~~~~~~~~~-----~~s~~~~~~~i~~~~~~~~~  402 (568)
                      ......+..+...     +..+++++..|+.++....+
T Consensus       343 ~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I  380 (388)
T d1erja_         343 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA  380 (388)
T ss_dssp             EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEE
T ss_pred             EEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEE
Confidence            6554433322211     12456677777766554443

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=2.3e-27  Score=234.83  Aligned_cols=231  Identities=13%  Similarity=0.114  Sum_probs=190.0

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT  184 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~  184 (568)
                      .++++|++          ..||.++ ++.|.+|++.++.....+                          .+|...| ++
T Consensus        22 ~~a~~~~g----------~~l~~~~-~~~v~i~~~~~~~~~~~~--------------------------~~H~~~v-~~   63 (311)
T d1nr0a1          22 VLGNTPAG----------DKIQYCN-GTSVYTVPVGSLTDTEIY--------------------------TEHSHQT-TV   63 (311)
T ss_dssp             CCEECTTS----------SEEEEEE-TTEEEEEETTCSSCCEEE--------------------------CCCSSCE-EE
T ss_pred             EEEEcCCC----------CEEEEEe-CCEEEEEECCCCceeEEE--------------------------cCCCCCE-EE
Confidence            78999999          7888876 567999999998777666                          7899999 99


Q ss_pred             EEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC--C-EEEE
Q 008363          185 MEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG--G-LKFW  261 (568)
Q Consensus       185 v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d--~-v~lw  261 (568)
                      ++|+  |+|++||+|+.||+|+|||+.....    .....+..|..+|.+|+|+|++      .+|++++.+  . +++|
T Consensus        64 ~~~s--p~g~~latg~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~v~~s~d~------~~l~~~~~~~~~~~~v~  131 (311)
T d1nr0a1          64 AKTS--PSGYYCASGDVHGNVRIWDTTQTTH----ILKTTIPVFSGPVKDISWDSES------KRIAAVGEGRERFGHVF  131 (311)
T ss_dssp             EEEC--TTSSEEEEEETTSEEEEEESSSTTC----CEEEEEECSSSCEEEEEECTTS------CEEEEEECCSSCSEEEE
T ss_pred             EEEe--CCCCeEeccccCceEeeeeeecccc----ccccccccccCccccccccccc------ccccccccccccccccc
Confidence            9999  8899999999999999999987622    3445688999999999999998      788888764  4 8999


Q ss_pred             ECCCCCcceeeeCCCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE
Q 008363          262 DIRDPFRPLWDIHPAPKFIYGLDWLPDPGC-VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS  340 (568)
Q Consensus       262 D~~~~~~~~~~~~~h~~~i~~l~~sp~~~~-l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~  340 (568)
                      |+.+. .....+.+|...|++++|+|++++ |++|+.|+.|++||++.        +        +.+..+..|...|++
T Consensus       132 ~~~~~-~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~--------~--------~~~~~~~~~~~~i~~  194 (311)
T d1nr0a1         132 LFDTG-TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP--------F--------KFKSTFGEHTKFVHS  194 (311)
T ss_dssp             ETTTC-CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT--------B--------EEEEEECCCSSCEEE
T ss_pred             ccccc-cccccccccccccccccccccceeeecccccccccccccccc--------c--------ccccccccccccccc
Confidence            99977 777888899999999999999986 77789999999999954        3        334678899999999


Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCC------cceeeeecccCCCCceEEcccCCCC
Q 008363          341 VQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNR------PMHFLCGSVTEDESAITVNTPLDNT  402 (568)
Q Consensus       341 l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~------~~~~~~~s~~~~~~~i~~~~~~~~~  402 (568)
                      +.|+|++.+|++++.||.|++||+.++..........      ...+.+.++++++..|+.++....+
T Consensus       195 v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v  262 (311)
T d1nr0a1         195 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTI  262 (311)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeE
Confidence            9999999999999999999999998765443222111      1234566788888888776554433

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=6.4e-27  Score=228.98  Aligned_cols=231  Identities=10%  Similarity=0.087  Sum_probs=171.8

Q ss_pred             EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEec-cCC-------------ccCCC
Q 008363           93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYL-SSM-------------KEGTD  158 (568)
Q Consensus        93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~-~~~-------------~~~~~  158 (568)
                      ....||.+ .|.+|+|+|++          .+||+|+.||+|+|||+.+++++..+.. |..             +.++.
T Consensus         6 ~~~~GH~~-~V~~l~~s~dg----------~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~   74 (299)
T d1nr0a2           6 QVRYGHNK-AITALSSSADG----------KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSW   74 (299)
T ss_dssp             EEECCCSS-CEEEEEECTTS----------SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEET
T ss_pred             eEcCCCCC-CcEEEEECCCC----------CEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccc
Confidence            34679999 55599999999          8999999999999999999887776642 322             22234


Q ss_pred             CceEEEeeccee-----ccccc-------------------------------------CCcCccceEEEEccCCCCCEE
Q 008363          159 PRFVKLEPVFRC-----SMLKC-------------------------------------GGTQSIPLTMEWSTSPPHDYL  196 (568)
Q Consensus       159 ~~~v~~~~~~~~-----~~~~~-------------------------------------~h~~~V~~~v~~s~~~~g~~l  196 (568)
                      +..+++|+....     .....                                     .....+ .+++|+  |++.+|
T Consensus        75 d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~s--~~~~~l  151 (299)
T d1nr0a2          75 DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNS-SCVALS--NDKQFV  151 (299)
T ss_dssp             TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCE-EEEEEC--TTSCEE
T ss_pred             eeeEEEeccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc--cccccc
Confidence            455555553220     00000                                     011233 567777  788899


Q ss_pred             EEEeCCCeEEEEEccCCCCCCCCceeE-EeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCc--ceee
Q 008363          197 LAGCHDGTVALWKFVASDSSIDSRPLL-CFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFR--PLWD  272 (568)
Q Consensus       197 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~--~~~~  272 (568)
                      ++|+.||.|++||+.+.      .... ....|...|.+++|+|++      .+|++++.|+ |++||+.+...  ....
T Consensus       152 ~~g~~dg~i~~~d~~~~------~~~~~~~~~~~~~i~~~~~~~~~------~~l~~~~~d~~i~~~~~~~~~~~~~~~~  219 (299)
T d1nr0a2         152 AVGGQDSKVHVYKLSGA------SVSEVKTIVHPAEITSVAFSNNG------AFLVATDQSRKVIPYSVANNFELAHTNS  219 (299)
T ss_dssp             EEEETTSEEEEEEEETT------EEEEEEEEECSSCEEEEEECTTS------SEEEEEETTSCEEEEEGGGTTEESCCCC
T ss_pred             ccccccccccccccccc------ccccccccccccccccccccccc------cccccccccccccccccccccccccccc
Confidence            99999999999999865      3322 345789999999999998      8999999998 99999987632  2345


Q ss_pred             eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecC-CCCEEEEEEecCCCEEE
Q 008363          273 IHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS-SFAIWSVQVSRLTGMVA  351 (568)
Q Consensus       273 ~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h-~~~V~~l~~sp~~~~l~  351 (568)
                      +.+|...|++++|+|++.+|++|+.||.|++||++...        .      ..+.....| ...|.++.| +++.+|+
T Consensus       220 ~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~--------~------~~~~~~~~~~~~~v~~~~~-~~~~~l~  284 (299)
T d1nr0a2         220 WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS--------D------HPIIIKGAHAMSSVNSVIW-LNETTIV  284 (299)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT--------S------CCEEETTSSTTSCEEEEEE-EETTEEE
T ss_pred             ccccccccccccccccccceEEEcCCCEEEEEECCCCC--------c------ceEEEecCCCCCcEEEEEE-CCCCEEE
Confidence            66889999999999999999999999999999996522        1      112232333 456776655 5578999


Q ss_pred             EEeCCCeEEEEEc
Q 008363          352 YCSADGTVHRFQL  364 (568)
Q Consensus       352 s~s~Dg~v~iwd~  364 (568)
                      +++.||+|++||+
T Consensus       285 s~s~D~~i~iWdl  297 (299)
T d1nr0a2         285 SAGQDSNIKFWNV  297 (299)
T ss_dssp             EEETTSCEEEEEC
T ss_pred             EEeCCCEEEEEec
Confidence            9999999999998

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.7e-27  Score=237.25  Aligned_cols=235  Identities=14%  Similarity=0.180  Sum_probs=180.2

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCCc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDPR  160 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~~  160 (568)
                      ...|.. .|.+++|+|++          .+|++|+.||.|++|+...++.+..+.+|..              ..++.++
T Consensus       117 ~~~~~~-~V~~l~~s~~~----------~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~  185 (388)
T d1erja_         117 SPSSDL-YIRSVCFSPDG----------KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR  185 (388)
T ss_dssp             --CCCC-BEEEEEECTTS----------SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccCCCC-CEEEEEECCCC----------Ccceecccccccccccccccccccccccccccccccccccccccccccccce
Confidence            346666 56699999999          8999999999999999999888887776654              4556778


Q ss_pred             eEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCC-CceeEEeeCCCCCeeEEEE
Q 008363          161 FVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSID-SRPLLCFSADTLPIRAVSW  237 (568)
Q Consensus       161 ~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~-~~~~~~~~~h~~~V~~v~~  237 (568)
                      .+++|+...  +......+ ... .++.|.+ +++.+|++|+.||.|++||+.+...... ........+|...|.+++|
T Consensus       186 ~i~~~d~~~~~~~~~~~~~-~~~-~~~~~~~-~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  262 (388)
T d1erja_         186 TVRIWDLRTGQCSLTLSIE-DGV-TTVAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF  262 (388)
T ss_dssp             EEEEEETTTTEEEEEEECS-SCE-EEEEECS-TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEE
T ss_pred             eeeeeeccccccccccccc-ccc-ccccccC-CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEE
Confidence            888888765  22222333 333 5666653 4778999999999999999986621000 0111233568999999999


Q ss_pred             ccCCCCCCCCcEEEEEcCCC-EEEEECCCCC-----------cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 008363          238 APAESDSDSANVILTAGHGG-LKFWDIRDPF-----------RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVS  305 (568)
Q Consensus       238 ~p~~~~~~~~~~las~s~d~-v~lwD~~~~~-----------~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd  305 (568)
                      +|++      .+|++++.|+ |++||+++..           ........|...|++++|+|++++|++|+.||.|++||
T Consensus       263 s~~~------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd  336 (388)
T d1erja_         263 TRDG------QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD  336 (388)
T ss_dssp             CTTS------SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEE
T ss_pred             CCCC------CEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            9998      8999999999 9999998653           12344557889999999999999999999999999999


Q ss_pred             ccccccCCCCCCCCccCccccceEEEecCCCCEEEEEE------ecCCCEEEEEeCCCeEEEEEcC
Q 008363          306 LLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQV------SRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       306 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~------sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      ++        ++++        +..+.+|.+.|+++++      +|++.+|+||+.||+|+||+++
T Consensus       337 ~~--------~~~~--------~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         337 KK--------SGNP--------LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             TT--------TCCE--------EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CC--------CCcE--------EEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            95        3544        4789999999999975      5688999999999999999983

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=5.8e-26  Score=225.91  Aligned_cols=228  Identities=17%  Similarity=0.174  Sum_probs=179.7

Q ss_pred             CcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeec
Q 008363           88 ALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPV  167 (568)
Q Consensus        88 ~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~  167 (568)
                      ..+.+..+.+|....+++++|+|....        .+||+|+.||+|+|||+..+.....+..+            .   
T Consensus        51 ~~~~~~~~~gh~~~~v~~v~fsP~~~g--------~~lasgs~Dg~i~iWd~~~~~~~~~~~~~------------~---  107 (325)
T d1pgua1          51 KVPPVVQFTGHGSSVVTTVKFSPIKGS--------QYLCSGDESGKVIVWGWTFDKESNSVEVN------------V---  107 (325)
T ss_dssp             SSCSEEEECTTTTSCEEEEEECSSTTC--------CEEEEEETTSEEEEEEEEEEGGGTEEEEE------------E---
T ss_pred             CccceEEEeCCCCCCEEEEEEeeCCCC--------CEEEEEeCCCCEEEeeecCCcceeeeecc------------c---
Confidence            345566678887767889999985321        69999999999999999875554433211            0   


Q ss_pred             ceecccccCCcCccceEEEEccCCCCCEEEEEeC--CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCC
Q 008363          168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH--DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSD  245 (568)
Q Consensus       168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~  245 (568)
                         ......|...| .+++|+  +++.+|++++.  ++.+.+|+..++      .++..+.+|...|.+++|+|++    
T Consensus       108 ---~~~~~~~~~~v-~~v~~s--~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~----  171 (325)
T d1pgua1         108 ---KSEFQVLAGPI-SDISWD--FEGRRLCVVGEGRDNFGVFISWDSG------NSLGEVSGHSQRINACHLKQSR----  171 (325)
T ss_dssp             ---EEEEECCSSCE-EEEEEC--TTSSEEEEEECCSSCSEEEEETTTC------CEEEECCSCSSCEEEEEECSSS----
T ss_pred             ---ccccccccCcE-EEEEEC--CCCCccceeeccccceEEEEeeccc------ccceeeeecccccccccccccc----
Confidence               01125678888 999999  88998887764  678999999876      7888999999999999999997    


Q ss_pred             CCcEEEEEcCCC-EEEEECCCCCcce---eeeCCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEccccccCCCCCCCCc
Q 008363          246 SANVILTAGHGG-LKFWDIRDPFRPL---WDIHPAPKFIYGLDWLPD-PGCVILSFDDGAMRIVSLLKAAYDVPATGKPF  320 (568)
Q Consensus       246 ~~~~las~s~d~-v~lwD~~~~~~~~---~~~~~h~~~i~~l~~sp~-~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~  320 (568)
                       +.++++++.|+ |++||+... ...   .....|...|++++|+|+ +.+|++++.|+.|++||++.        ++. 
T Consensus       172 -~~~~~~~~~d~~v~~~d~~~~-~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~--------~~~-  240 (325)
T d1pgua1         172 -PMRSMTVGDDGSVVFYQGPPF-KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS--------GEF-  240 (325)
T ss_dssp             -SCEEEEEETTTEEEEEETTTB-EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT--------CCE-
T ss_pred             -cceEEEeeccccccccccccc-ccceecccccCCCCccEEeeeccccceeccccccccceeeeeecc--------ccc-
Confidence             35688899999 999999865 332   334577888999999996 68889999999999999953        433 


Q ss_pred             cCccccceEEEecCCCCEEEEEEe---cCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          321 AGTKQQGLHLVNCSSFAIWSVQVS---RLTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       321 ~~~~~~~l~~~~~h~~~V~~l~~s---p~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                             +..+.+|..++.++.|+   |++.+|++++.|+.|+|||+.+++..+.
T Consensus       241 -------~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~  288 (325)
T d1pgua1         241 -------LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQK  288 (325)
T ss_dssp             -------EEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             -------cccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence                   46788888777666555   6789999999999999999998876654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=1.3e-25  Score=227.62  Aligned_cols=212  Identities=11%  Similarity=0.138  Sum_probs=172.5

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeeccee
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRC  170 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~  170 (568)
                      .+..+.+|.+ .|.+|+|+|++          ++|++|+.|++|+|||+.++.....+                      
T Consensus        43 ~~~~l~gH~~-~V~~l~fsp~~----------~~l~s~s~D~~i~vWd~~~~~~~~~~----------------------   89 (371)
T d1k8kc_          43 QVHELKEHNG-QVTGVDWAPDS----------NRIVTCGTDRNAYVWTLKGRTWKPTL----------------------   89 (371)
T ss_dssp             EEEEEECCSS-CEEEEEEETTT----------TEEEEEETTSCEEEEEEETTEEEEEE----------------------
T ss_pred             EEEEecCCCC-CEEEEEECCCC----------CEEEEEECCCeEEEEeeccccccccc----------------------
Confidence            3445678998 55699999999          89999999999999999875544332                      


Q ss_pred             cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363          171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI  250 (568)
Q Consensus       171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l  250 (568)
                        ...+|...| ++++|+  |+++.|++|+.|++|++|++.....  ..........|...|.+++|+|++      .+|
T Consensus        90 --~~~~~~~~v-~~i~~~--p~~~~l~~~s~d~~i~i~~~~~~~~--~~~~~~~~~~~~~~v~~v~~~p~~------~~l  156 (371)
T d1k8kc_          90 --VILRINRAA-RCVRWA--PNEKKFAVGSGSRVISICYFEQEND--WWVCKHIKKPIRSTVLSLDWHPNS------VLL  156 (371)
T ss_dssp             --ECCCCSSCE-EEEEEC--TTSSEEEEEETTSSEEEEEEETTTT--EEEEEEECTTCCSCEEEEEECTTS------SEE
T ss_pred             --ccccccccc-cccccc--cccccceeecccCcceeeeeecccc--cccccccccccccccccccccccc------cce
Confidence              116788888 999999  8899999999999999999886521  112234556799999999999998      899


Q ss_pred             EEEcCCC-EEEEECCCCC-----------------cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccC
Q 008363          251 LTAGHGG-LKFWDIRDPF-----------------RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYD  312 (568)
Q Consensus       251 as~s~d~-v~lwD~~~~~-----------------~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~  312 (568)
                      ++|+.|+ |++||+....                 ..+.....|...|++++|+|++++|++++.|+.|++||+..    
T Consensus       157 ~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~----  232 (371)
T d1k8kc_         157 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK----  232 (371)
T ss_dssp             EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG----
T ss_pred             eccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeec----
Confidence            9999999 9999986532                 23455668899999999999999999999999999999953    


Q ss_pred             CCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          313 VPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       313 ~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                          +        ..+..+..|..+|.+++|+|++.+|++| .|+.+++|...
T Consensus       233 ----~--------~~~~~~~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~  272 (371)
T d1k8kc_         233 ----K--------MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYD  272 (371)
T ss_dssp             ----T--------TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEE
T ss_pred             ----c--------cceeeeecccccceeeeecCCCCEEEEE-cCCceEEEEee
Confidence                3        3356888999999999999999877765 58887777764

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-24  Score=214.91  Aligned_cols=222  Identities=17%  Similarity=0.265  Sum_probs=167.6

Q ss_pred             EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------ccCCCCce
Q 008363           94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------KEGTDPRF  161 (568)
Q Consensus        94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------~~~~~~~~  161 (568)
                      .+.+|.+.++.+  +++++          ++||||+.||+|+|||+.+++++..+.+|..            ++++.++.
T Consensus        11 ~l~GH~~~V~s~--~~~~g----------~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~   78 (342)
T d2ovrb2          11 VLKGHDDHVITC--LQFCG----------NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRT   78 (342)
T ss_dssp             EEECSTTSCEEE--EEEET----------TEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSC
T ss_pred             EECCcCCceEEE--EEECC----------CEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceeccc
Confidence            346999977643  55667          7999999999999999999999988877654            12222222


Q ss_pred             --------------------------------------------------------------------------------
Q 008363          162 --------------------------------------------------------------------------------  161 (568)
Q Consensus       162 --------------------------------------------------------------------------------  161 (568)
                                                                                                      
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  158 (342)
T d2ovrb2          79 LKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFM  158 (342)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSC
T ss_pred             ccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCe
Confidence                                                                                            


Q ss_pred             EEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEcc
Q 008363          162 VKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAP  239 (568)
Q Consensus       162 v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p  239 (568)
                      +++|+...  +...+.+|...+ ..+.    +++.+|++|+.||+|++||+...      .++..+.+|...|.++++++
T Consensus       159 i~~~d~~~~~~~~~~~~~~~~~-~~~~----~~~~~l~s~~~dg~i~~~d~~~~------~~~~~~~~~~~~v~~~~~~~  227 (342)
T d2ovrb2         159 VKVWDPETETCLHTLQGHTNRV-YSLQ----FDGIHVVSGSLDTSIRVWDVETG------NCIHTLTGHQSLTSGMELKD  227 (342)
T ss_dssp             EEEEEGGGTEEEEEECCCSSCE-EEEE----ECSSEEEEEETTSCEEEEETTTC------CEEEEECCCCSCEEEEEEET
T ss_pred             EEEeecccceeeEEEcCccccc-cccc----CCCCEEEEEeCCCeEEEeecccc------eeeeEecccccceeEEecCC
Confidence            22332222  122234455444 4444    35789999999999999999876      78889999999999888764


Q ss_pred             CCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeC---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCC
Q 008363          240 AESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIH---PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPA  315 (568)
Q Consensus       240 ~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~---~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~  315 (568)
                              ++|++++.|+ |++||+... .....+.   .|...+.++.++  +.++++++.||+|++||++        
T Consensus       228 --------~~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~--------  288 (342)
T d2ovrb2         228 --------NILVSGNADSTVKIWDIKTG-QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLK--------  288 (342)
T ss_dssp             --------TEEEEEETTSCEEEEETTTC-CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETT--------
T ss_pred             --------CEEEEEcCCCEEEEEecccc-cccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECC--------
Confidence                    4899999999 999999977 4444444   456667777765  5789999999999999995        


Q ss_pred             CCCCccCccccceEEE-----ecCCCCEEEEEEecCCCEEEEEeCCCe----EEEEEcC
Q 008363          316 TGKPFAGTKQQGLHLV-----NCSSFAIWSVQVSRLTGMVAYCSADGT----VHRFQLT  365 (568)
Q Consensus       316 ~g~~~~~~~~~~l~~~-----~~h~~~V~~l~~sp~~~~l~s~s~Dg~----v~iwd~~  365 (568)
                      +|+++        ..+     .+|...|++++|+|++.+|++|+.||+    |++||++
T Consensus       289 tg~~i--------~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         289 TGEFI--------RNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             TCCEE--------EEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CCCEE--------EEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            36543        333     367889999999999999999999986    9999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.3e-24  Score=215.60  Aligned_cols=256  Identities=11%  Similarity=0.152  Sum_probs=186.9

Q ss_pred             ceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-------------ccC
Q 008363           90 PRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-------------KEG  156 (568)
Q Consensus        90 p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-------------~~~  156 (568)
                      |....+.+|...++.+++|  ++          ++||+|+.||+|+|||+.+++++.++.+|..             +++
T Consensus         3 p~~~tL~GH~~~vitc~~~--~~----------~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~   70 (355)
T d1nexb2           3 PQRTTLRGHMTSVITCLQF--ED----------NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSG   70 (355)
T ss_dssp             CEEEEEECCSSSCEEEEEE--ET----------TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEE
T ss_pred             CCcEEECCcCCCcEEEEEE--CC----------CEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEE
Confidence            6667778999978756555  56          7999999999999999999999999988765             567


Q ss_pred             CCCceEEEeeccee--ccccc--CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCC----------------
Q 008363          157 TDPRFVKLEPVFRC--SMLKC--GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSS----------------  216 (568)
Q Consensus       157 ~~~~~v~~~~~~~~--~~~~~--~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~----------------  216 (568)
                      +.++.+++|.....  .....  .+.... ..+.+.  +++.++++++.||+|++||+......                
T Consensus        71 s~D~~i~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  147 (355)
T d1nexb2          71 STDRTVRVWDIKKGCCTHVFEGHNSTVRC-LDIVEY--KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP  147 (355)
T ss_dssp             ETTCCEEEEETTTTEEEEEECCCSSCEEE-EEEEEE--TTEEEEEEEETTSEEEEEECCC-----------CCCEEESCT
T ss_pred             ecccccccccccccccccccccccccccc-cccccc--cccceeeeecCCCcEEEEEccCCceeccccccceeccceecc
Confidence            78888999887652  11111  222222 444555  67788999999999999987643210                


Q ss_pred             -----------------------------------------CCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363          217 -----------------------------------------IDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH  255 (568)
Q Consensus       217 -----------------------------------------~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~  255 (568)
                                                               ...+.+..+.++...+.++.|++.+      .++++++.
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  221 (355)
T d1nexb2         148 EENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER------KRCISASM  221 (355)
T ss_dssp             TTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT------TEEEEEET
T ss_pred             ccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccc------eeeecccc
Confidence                                                     0112334455677788899999998      89999999


Q ss_pred             CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363          256 GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS  334 (568)
Q Consensus       256 d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h  334 (568)
                      |+ |++||++++ ..+..+.+|...|++++|+  +++|++++.||.|++||++...                  ..+..|
T Consensus       222 d~~i~i~d~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~------------------~~~~~~  280 (355)
T d1nexb2         222 DTTIRIWDLENG-ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS------------------RKFSYH  280 (355)
T ss_dssp             TSCEEEEETTTC-CEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCC------------------EEEEEE
T ss_pred             cceEEeeecccc-ccccccccccccccccccc--cceeeeeecccccccccccccc------------------eecccc
Confidence            99 999999987 7888899999999999997  4689999999999999995421                  355667


Q ss_pred             CCCEEEEE-EecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccC
Q 008363          335 SFAIWSVQ-VSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTE  388 (568)
Q Consensus       335 ~~~V~~l~-~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~  388 (568)
                      ...+.++. |++++.+|++| .||.|+|||+++++..............+.++++
T Consensus       281 ~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~  334 (355)
T d1nexb2         281 HTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKG  334 (355)
T ss_dssp             CTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEET
T ss_pred             cCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcC
Confidence            76666654 56666766665 5999999999988765432222223344445554

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.2e-24  Score=222.27  Aligned_cols=253  Identities=15%  Similarity=0.175  Sum_probs=173.7

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCce------eeEEeccCC-----------
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRT------MKAIYLSSM-----------  153 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~------~~~l~~~~~-----------  153 (568)
                      ......+|.+ .|++|++++            ++|++++.|++|+|||..+...      ......+..           
T Consensus         6 ~~~~~~~H~~-~I~~v~~~~------------~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (393)
T d1sq9a_           6 TANAGKAHDA-DIFSVSACN------------SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAI   72 (393)
T ss_dssp             EEEESSCSSS-CEEEEEECS------------SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEE
T ss_pred             eeecCCcccC-ccEEEEEeC------------CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeee
Confidence            3445579999 555998864            4899999999999999765321      111111100           


Q ss_pred             ----------ccCCCCceEEEeecceecc------------cccCCcCccceEEEEccCC---CCCEEEEEeCCCeEEEE
Q 008363          154 ----------KEGTDPRFVKLEPVFRCSM------------LKCGGTQSIPLTMEWSTSP---PHDYLLAGCHDGTVALW  208 (568)
Q Consensus       154 ----------~~~~~~~~v~~~~~~~~~~------------~~~~h~~~V~~~v~~s~~~---~g~~l~sgs~Dg~I~iw  208 (568)
                                +.++.++.+++|.......            ....+...+ +.++|.+..   .+.++++++.||+|++|
T Consensus        73 ~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~dg~i~vw  151 (393)
T d1sq9a_          73 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF-WALKWGASNDRLLSHRLVATDVKGTTYIW  151 (393)
T ss_dssp             ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCE-EEEEEECCC----CEEEEEEETTSCEEEE
T ss_pred             ccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCce-EEEEEecCCCcccccEEEEEcCCCcEEEE
Confidence                      2455677788876543110            111244455 778887442   24689999999999999


Q ss_pred             EccCCCCC-----CCCc-------eeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCccee----
Q 008363          209 KFVASDSS-----IDSR-------PLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLW----  271 (568)
Q Consensus       209 d~~~~~~~-----~~~~-------~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~----  271 (568)
                      ++......     ....       .......+...+.+++|+|++       +||+|+.|+ |+|||+.+. +++.    
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-------~lasgs~Dg~i~iwd~~~~-~~~~~~~~  223 (393)
T d1sq9a_         152 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-------LIATGFNNGTVQISELSTL-RPLYNFES  223 (393)
T ss_dssp             EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-------EEEEECTTSEEEEEETTTT-EEEEEEEC
T ss_pred             EeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-------EEEEEeCCCcEEEEeeccc-cccccccc
Confidence            98633210     0000       111223456679999999986       899999999 999999977 4443    


Q ss_pred             --eeCCCCCCeEEEEEcCCCCEEEEEeCCCc---EEEEEccccccCCCCCCCCccC-----ccccceEEEecCCCCEEEE
Q 008363          272 --DIHPAPKFIYGLDWLPDPGCVILSFDDGA---MRIVSLLKAAYDVPATGKPFAG-----TKQQGLHLVNCSSFAIWSV  341 (568)
Q Consensus       272 --~~~~h~~~i~~l~~sp~~~~l~s~~~dg~---I~lwd~~~~~~~~~~~g~~~~~-----~~~~~l~~~~~h~~~V~~l  341 (568)
                        .+.+|..+|++|+|+|++++|++|+.|++   |++||+..        |+.+..     ........+.+|...|+++
T Consensus       224 ~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~--------g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l  295 (393)
T d1sq9a_         224 QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF--------GERIGSLSVPTHSSQASLGEFAHSSWVMSL  295 (393)
T ss_dssp             CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT--------CCEEEEECBC--------CCBSBSSCEEEE
T ss_pred             ccccccccceEEEcccccccceeeeecCCCCcceeeeccccc--------ceeeeeeccccccccceeeeecccCceeee
Confidence              34579999999999999999999998875   89999853        433210     0001122345899999999


Q ss_pred             EEecCCCEEEEEeCCCeEEEEEcCCCeeeccC
Q 008363          342 QVSRLTGMVAYCSADGTVHRFQLTAKAVEKDH  373 (568)
Q Consensus       342 ~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~  373 (568)
                      +|+|++++|+++|.|++|+|||+.++......
T Consensus       296 ~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l  327 (393)
T d1sq9a_         296 SFNDSGETLCSAGWDGKLRFWDVKTKERITTL  327 (393)
T ss_dssp             EECSSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ccCCCCCeeEEECCCCEEEEEECCCCCEEEEE
Confidence            99999999999999999999999998776553

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=7.8e-24  Score=209.36  Aligned_cols=203  Identities=15%  Similarity=0.210  Sum_probs=162.7

Q ss_pred             cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCC----------
Q 008363          173 LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAES----------  242 (568)
Q Consensus       173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~----------  242 (568)
                      ++.||...| ++|+|+  |++.+||+|+.||+|+|||+.++      ..+..+..|...|.+++|+|++.          
T Consensus        50 tL~GH~~~I-~~l~~s--~~~~~l~sgs~Dg~v~iWd~~~~------~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~  120 (340)
T d1tbga_          50 TLRGHLAKI-YAMHWG--TDSRLLVSASQDGKLIIWDSYTT------NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI  120 (340)
T ss_dssp             EECCCSSCE-EEEEEC--TTSSEEEEEETTTEEEEEETTTT------EEEEEEECSCSCEEEEEECTTSSEEEEEETTCC
T ss_pred             EECCCCCCE-EEEEEC--CCCCEEEEEECCCceeeeecccc------eeEEEEecccccEEeeEeeccceeeeeecccce
Confidence            448999999 999999  88999999999999999999877      88889999999999999999871          


Q ss_pred             -----------------------------------------------------------------------CCCCCcEEE
Q 008363          243 -----------------------------------------------------------------------DSDSANVIL  251 (568)
Q Consensus       243 -----------------------------------------------------------------------~~~~~~~la  251 (568)
                                                                                             ......+++
T Consensus       121 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (340)
T d1tbga_         121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV  200 (340)
T ss_dssp             EEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             eecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeE
Confidence                                                                                   000234556


Q ss_pred             EEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363          252 TAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL  330 (568)
Q Consensus       252 s~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~  330 (568)
                      +++.|+ |++||+++. .++..+.+|...|++++|+|++.+|++++.||.|++||++...        .        +..
T Consensus       201 ~~~~d~~v~i~d~~~~-~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~--------~--------~~~  263 (340)
T d1tbga_         201 SGACDASAKLWDVREG-MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--------E--------LMT  263 (340)
T ss_dssp             EEETTTEEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--------E--------EEE
T ss_pred             EeecCceEEEEECCCC-cEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccc--------c--------ccc
Confidence            666666 777777665 6667778899999999999999999999999999999996421        1        223


Q ss_pred             E--ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccCCCC
Q 008363          331 V--NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNT  402 (568)
Q Consensus       331 ~--~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~  402 (568)
                      +  ..|...|.+++|+|++.+|++|+.||.|++||+.++........+.. .+.+.++++++..|++++....+
T Consensus       264 ~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~-~V~~l~~s~d~~~l~s~s~Dg~v  336 (340)
T d1tbga_         264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN-RVSCLGVTDDGMAVATGSWDSFL  336 (340)
T ss_dssp             ECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEETTSCE
T ss_pred             cccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEccCCEE
Confidence            2  35667899999999999999999999999999998877665444332 35566788999888887665544

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.7e-23  Score=200.17  Aligned_cols=229  Identities=12%  Similarity=0.195  Sum_probs=175.1

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------ccCCC
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------KEGTD  158 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------~~~~~  158 (568)
                      ++.....|..+ |+|++  +++          ++||+|+.||+|+|||+.+++++.++.+|..            ++++.
T Consensus         7 ~i~~~~~~~~~-V~c~~--~d~----------~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~   73 (293)
T d1p22a2           7 RIHCRSETSKG-VYCLQ--YDD----------QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSS   73 (293)
T ss_dssp             CEECCCSSCCC-EEEEE--CCS----------SEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEET
T ss_pred             EEeccCCCCCC-EEEEE--EcC----------CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeecccc
Confidence            34444556664 44655  467          7999999999999999999999999988765            45566


Q ss_pred             CceEEEeeccee---------------------------------------------cccccCCcCccceEEEEccCCCC
Q 008363          159 PRFVKLEPVFRC---------------------------------------------SMLKCGGTQSIPLTMEWSTSPPH  193 (568)
Q Consensus       159 ~~~v~~~~~~~~---------------------------------------------~~~~~~h~~~V~~~v~~s~~~~g  193 (568)
                      ++.+.+|.....                                             ......|...+ .++.+.    .
T Consensus        74 D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~----~  148 (293)
T d1p22a2          74 DSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV-NVVDFD----D  148 (293)
T ss_dssp             TSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE-EEEEEE----T
T ss_pred             cccccccccccccccccccccccccccccccccceeecccccceeEeecccccccccccccccccccc-ccceec----c
Confidence            777777665320                                             01123455555 556654    4


Q ss_pred             CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceee
Q 008363          194 DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWD  272 (568)
Q Consensus       194 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~  272 (568)
                      ..+++++.|+.|++||+.+.      +++..+.+|...|..+.+++        .+|++++.|+ |++||+++. ..+..
T Consensus       149 ~~~~~~s~d~~i~~~d~~~~------~~~~~~~~~~~~v~~~~~~~--------~~l~~~~~dg~i~i~d~~~~-~~~~~  213 (293)
T d1p22a2         149 KYIVSASGDRTIKVWNTSTC------EFVRTLNGHKRGIACLQYRD--------RLVVSGSSDNTIRLWDIECG-ACLRV  213 (293)
T ss_dssp             TEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEEET--------TEEEEEETTSCEEEEETTTC-CEEEE
T ss_pred             cccccccCCCceeeecCCCC------cEEEEEcccccccccccCCC--------CeEEEecCCCEEEEEecccc-eeeee
Confidence            58889999999999999876      78888999999998887764        4899999998 999999987 77888


Q ss_pred             eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEE
Q 008363          273 IHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAY  352 (568)
Q Consensus       273 ~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s  352 (568)
                      +.+|...+..  +++++.+|++++.||.|++||++........       ....++..+.+|.+.|++++|+  +.+|++
T Consensus       214 ~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-------~~~~~~~~~~~H~~~V~~v~~d--~~~l~s  282 (293)
T d1p22a2         214 LEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAP-------AGTLCLRTLVEHSGRVFRLQFD--EFQIVS  282 (293)
T ss_dssp             ECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSC-------TTTTEEEEECCCSSCCCCEEEC--SSCEEE
T ss_pred             ecccceeeee--ccccceEEEEEcCCCEEEEEECCCCcccccc-------CCceeeEEecCCCCCEEEEEEc--CCEEEE
Confidence            8888887765  5567889999999999999998653321100       1124567889999999999994  678999


Q ss_pred             EeCCCeEEEEE
Q 008363          353 CSADGTVHRFQ  363 (568)
Q Consensus       353 ~s~Dg~v~iwd  363 (568)
                      +|.||+|+|||
T Consensus       283 ~s~Dg~i~iWD  293 (293)
T d1p22a2         283 SSHDDTILIWD  293 (293)
T ss_dssp             CCSSSEEEEEC
T ss_pred             EecCCEEEEeC
Confidence            99999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=3.6e-23  Score=203.53  Aligned_cols=255  Identities=11%  Similarity=0.117  Sum_probs=173.1

Q ss_pred             EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363           94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML  173 (568)
Q Consensus        94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~  173 (568)
                      ...+|.++ |++|+|+|++          .+||+|+.||+|+|||+.++.....+..                       
T Consensus         6 ~~~~h~d~-I~~l~fsp~~----------~~L~s~s~Dg~v~iwd~~~~~~~~~~~~-----------------------   51 (342)
T d1yfqa_           6 IEQAPKDY-ISDIKIIPSK----------SLLLITSWDGSLTVYKFDIQAKNVDLLQ-----------------------   51 (342)
T ss_dssp             CSSCCSSC-EEEEEEEGGG----------TEEEEEETTSEEEEEEEETTTTEEEEEE-----------------------
T ss_pred             cCCCCCCC-EEEEEEeCCC----------CEEEEEECCCeEEEEEccCCCcceEEEE-----------------------
Confidence            34578884 5599999999          7999999999999999987554333211                       


Q ss_pred             ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCC-eeEEEEccCCCCCCCCcEEEE
Q 008363          174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLP-IRAVSWAPAESDSDSANVILT  252 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~-V~~v~~~p~~~~~~~~~~las  252 (568)
                      ..+|...| ++++|++. .+.+|++|+.||+|++|++...      ........+... .....+.+..      ..+++
T Consensus        52 ~~~h~~~V-~~v~f~~~-~~~~l~sg~~d~~v~~w~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~  117 (342)
T d1yfqa_          52 SLRYKHPL-LCCNFIDN-TDLQIYVGTVQGEILKVDLIGS------PSFQALTNNEANLGICRICKYGD------DKLIA  117 (342)
T ss_dssp             EEECSSCE-EEEEEEES-SSEEEEEEETTSCEEEECSSSS------SSEEECBSCCCCSCEEEEEEETT------TEEEE
T ss_pred             ecCCCCCE-EEEEEeCC-CCCEEEEcccccceeeeecccc------ccccccccccccccccccccccc------ccccc
Confidence            14789999 99999942 3458999999999999999866      444444444444 3444555555      79999


Q ss_pred             EcCCC-EEEEECCCCCcce---eeeCCC--CCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCC------C-----
Q 008363          253 AGHGG-LKFWDIRDPFRPL---WDIHPA--PKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVP------A-----  315 (568)
Q Consensus       253 ~s~d~-v~lwD~~~~~~~~---~~~~~h--~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~------~-----  315 (568)
                      ++.++ +++||++......   .....+  ......+.+.+.+..+++++.|+.|++||++.......      .     
T Consensus       118 ~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~  197 (342)
T d1yfqa_         118 ASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIR  197 (342)
T ss_dssp             EETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEE
T ss_pred             cccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeeccccccee
Confidence            99998 9999997653221   222222  22345677888899999999999999999865431100      0     


Q ss_pred             -------CCCCcc-Cccccce--------------------------EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEE
Q 008363          316 -------TGKPFA-GTKQQGL--------------------------HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHR  361 (568)
Q Consensus       316 -------~g~~~~-~~~~~~l--------------------------~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~i  361 (568)
                             .+..+. +.....+                          ....+|...|++++|+|++.+|++|+.||.|++
T Consensus       198 ~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~v  277 (342)
T d1yfqa_         198 DVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISC  277 (342)
T ss_dssp             EEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEE
T ss_pred             eeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEE
Confidence                   000000 0000000                          001245567899999999999999999999999


Q ss_pred             EEcCCCeeeccCCCCCcceeeeecccCCCCceEEccc
Q 008363          362 FQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTP  398 (568)
Q Consensus       362 wd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~  398 (568)
                      ||+.+++..........  ..+.++++++..+++++.
T Consensus       278 WD~~~~~~l~~~~~~~~--~~~~~~s~~~~~l~~a~s  312 (342)
T d1yfqa_         278 WNLQTRKKIKNFAKFNE--DSVVKIACSDNILCLATS  312 (342)
T ss_dssp             EETTTTEEEEECCCCSS--SEEEEEEECSSEEEEEEE
T ss_pred             EECCCCcEEEEecCCCC--CEEEEEEeCCCEEEEEEc
Confidence            99998876654332222  223467778887777543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=4.6e-23  Score=204.34  Aligned_cols=225  Identities=15%  Similarity=0.250  Sum_probs=164.9

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC----------------c
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM----------------K  154 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~----------------~  154 (568)
                      .+..+.+|.+ .|++++|+|++           +|++|+.||+|++|++..............                +
T Consensus        45 ~~~~l~~H~~-~V~~l~~s~~~-----------~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (355)
T d1nexb2          45 FLLQLSGHDG-GVWALKYAHGG-----------ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV  112 (355)
T ss_dssp             EEEEEECCSS-CEEEEEEETTT-----------EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEE
T ss_pred             EEEEEECCCC-CEEEEEEcCCC-----------EEEEEecccccccccccccccccccccccccccccccccccccceee
Confidence            4555678998 55699999864           899999999999999988665544322211                3


Q ss_pred             cCCCCceEEEeecce-----------------------------------------------------------------
Q 008363          155 EGTDPRFVKLEPVFR-----------------------------------------------------------------  169 (568)
Q Consensus       155 ~~~~~~~v~~~~~~~-----------------------------------------------------------------  169 (568)
                      .++.++.+++|+...                                                                 
T Consensus       113 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~  192 (355)
T d1nexb2         113 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK  192 (355)
T ss_dssp             EEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE
T ss_pred             eecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeeccccc
Confidence            344455555554321                                                                 


Q ss_pred             ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcE
Q 008363          170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV  249 (568)
Q Consensus       170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~  249 (568)
                      ......++...+ .++.|+  +++.++++++.||+|++||+.++      .++..+.+|...|.+++|++        ++
T Consensus       193 ~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~d~~i~i~d~~~~------~~~~~~~~h~~~v~~~~~~~--------~~  255 (355)
T d1nexb2         193 CLYILSGHTDRI-YSTIYD--HERKRCISASMDTTIRIWDLENG------ELMYTLQGHTALVGLLRLSD--------KF  255 (355)
T ss_dssp             EEEEECCCSSCE-EEEEEE--TTTTEEEEEETTSCEEEEETTTC------CEEEEECCCSSCCCEEEECS--------SE
T ss_pred             ceeeeecccccc-cccccc--ccceeeecccccceEEeeecccc------cccccccccccccccccccc--------ce
Confidence            111223455555 778888  78899999999999999999976      78889999999999999864        58


Q ss_pred             EEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEE-EEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccc
Q 008363          250 ILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGL-DWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQG  327 (568)
Q Consensus       250 las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l-~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~  327 (568)
                      |++++.|+ |++||+++. ...  +..|...+.++ .+++++.+|++| .|+.|+|||++        +|+++.      
T Consensus       256 l~~~~~dg~i~iwd~~~~-~~~--~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~--------tg~~~~------  317 (355)
T d1nexb2         256 LVSAAADGSIRGWDANDY-SRK--FSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLR--------SGKLVH------  317 (355)
T ss_dssp             EEEECTTSEEEEEETTTC-CEE--EEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETT--------TCCBCC------
T ss_pred             eeeeeccccccccccccc-cee--cccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECC--------CCCEEE------
Confidence            99999999 999999976 333  33445555554 456677665554 58999999995        465541      


Q ss_pred             eEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          328 LHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       328 l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                       ..+.+|...|++++|+|+ .+|++++.||.++||-+
T Consensus       318 -~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         318 -ANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             -SCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             -EEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence             245689999999999986 57888999999777654

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=8.3e-23  Score=202.82  Aligned_cols=202  Identities=16%  Similarity=0.138  Sum_probs=157.9

Q ss_pred             eeccCCceeeEEEEccCCCCcccccCcccEEEEEeC--CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecc
Q 008363           95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLG--NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSM  172 (568)
Q Consensus        95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~--dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~  172 (568)
                      ...|.+ .|.+++|+|++          .+|++++.  ++.+.+|++.+++++..+                        
T Consensus       111 ~~~~~~-~v~~v~~s~~~----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------------------  155 (325)
T d1pgua1         111 FQVLAG-PISDISWDFEG----------RRLCVVGEGRDNFGVFISWDSGNSLGEV------------------------  155 (325)
T ss_dssp             EECCSS-CEEEEEECTTS----------SEEEEEECCSSCSEEEEETTTCCEEEEC------------------------
T ss_pred             cccccC-cEEEEEECCCC----------CccceeeccccceEEEEeecccccceee------------------------
Confidence            345777 45599999999          67777654  678999999998888776                        


Q ss_pred             cccCCcCccceEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCCCCceeEE---eeCCCCCeeEEEEccCCCCCCCCc
Q 008363          173 LKCGGTQSIPLTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSIDSRPLLC---FSADTLPIRAVSWAPAESDSDSAN  248 (568)
Q Consensus       173 ~~~~h~~~V~~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~---~~~h~~~V~~v~~~p~~~~~~~~~  248 (568)
                        .+|...| .+++|+  +++. ++++++.||.|++||+...      +....   +.+|...|.+++|+|++     ..
T Consensus       156 --~~h~~~v-~~~~~~--~~~~~~~~~~~~d~~v~~~d~~~~------~~~~~~~~~~~~~~~v~~v~~~pd~-----~~  219 (325)
T d1pgua1         156 --SGHSQRI-NACHLK--QSRPMRSMTVGDDGSVVFYQGPPF------KFSASDRTHHKQGSFVRDVEFSPDS-----GE  219 (325)
T ss_dssp             --CSCSSCE-EEEEEC--SSSSCEEEEEETTTEEEEEETTTB------EEEEEECSSSCTTCCEEEEEECSTT-----CC
T ss_pred             --eeccccc-cccccc--ccccceEEEeeccccccccccccc------ccceecccccCCCCccEEeeecccc-----ce
Confidence              7889999 999999  5554 5788999999999998754      33333   35678889999999975     27


Q ss_pred             EEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEc---CCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcc
Q 008363          249 VILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWL---PDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTK  324 (568)
Q Consensus       249 ~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~s---p~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~  324 (568)
                      +|++++.|+ |++||++++ ..+..+.+|...+..+.|+   |++++|++++.|+.|+|||++.        +++     
T Consensus       220 ~l~s~~~d~~i~iwd~~~~-~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~--------~~~-----  285 (325)
T d1pgua1         220 FVITVGSDRKISCFDGKSG-EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT--------SKC-----  285 (325)
T ss_dssp             EEEEEETTCCEEEEETTTC-CEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT--------TEE-----
T ss_pred             eccccccccceeeeeeccc-cccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCC--------CCE-----
Confidence            999999999 999999987 7788888888777655555   6899999999999999999953        433     


Q ss_pred             ccceEEEecCCCC--EEEEEEecC-CCEEEEEeCCCeEEEEEc
Q 008363          325 QQGLHLVNCSSFA--IWSVQVSRL-TGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       325 ~~~l~~~~~h~~~--V~~l~~sp~-~~~l~s~s~Dg~v~iwd~  364 (568)
                         +..+..|...  +..++|.+. +.+|++++.||.|++||+
T Consensus       286 ---~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         286 ---VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             ---EEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             ---EEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence               4566555543  334444433 458999999999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=4.5e-22  Score=193.58  Aligned_cols=216  Identities=12%  Similarity=0.184  Sum_probs=174.8

Q ss_pred             cCCCCceEEEeecce--ecccccCCcCccceEEEEcc----------------------------------------CCC
Q 008363          155 EGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWST----------------------------------------SPP  192 (568)
Q Consensus       155 ~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~----------------------------------------~~~  192 (568)
                      +++.|+.|++|+..+  +...+.+|...| .+++|++                                        .++
T Consensus        34 s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (317)
T d1vyhc1          34 SASEDATIKVWDYETGDFERTLKGHTDSV-QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN  112 (317)
T ss_dssp             EEESSSCEEEEETTTCCCCEEECCCSSCE-EEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSS
T ss_pred             EEeCCCeEEEEECCCCCEEEEEeCCCCcE-EEEeeecccccccccccccccccccccccccccccccccccceeeeccCC
Confidence            467788999998754  344455666666 6666653                                        145


Q ss_pred             CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCccee
Q 008363          193 HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLW  271 (568)
Q Consensus       193 g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~  271 (568)
                      +..+++++.|+.+++||+.++      ..+..+.+|...+.+++|++++      .+|++++.|+ |++|++.+. ..+.
T Consensus       113 ~~~~~~~~~d~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~d~~v~~~~~~~~-~~~~  179 (317)
T d1vyhc1         113 GDHIVSASRDKTIKMWEVQTG------YCVKTFTGHREWVRMVRPNQDG------TLIASCSNDQTVRVWVVATK-ECKA  179 (317)
T ss_dssp             SSEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEECTTS------SEEEEEETTSCEEEEETTTC-CEEE
T ss_pred             CceEEeeccCcceeEeecccc------eeeeEEccCCCcceeeecccCC------CEEEEEeCCCeEEEEeeccc-eeeE
Confidence            677888999999999999876      7888899999999999999998      8999999999 999999987 7788


Q ss_pred             eeCCCCCCeEEEEEcCCC--------------------CEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363          272 DIHPAPKFIYGLDWLPDP--------------------GCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV  331 (568)
Q Consensus       272 ~~~~h~~~i~~l~~sp~~--------------------~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~  331 (568)
                      .+.+|...+.+++|+|++                    .++++++.|+.|++||+++        +        .++..+
T Consensus       180 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~--------~--------~~~~~~  243 (317)
T d1vyhc1         180 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST--------G--------MCLMTL  243 (317)
T ss_dssp             EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT--------T--------EEEEEE
T ss_pred             EEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCC--------C--------cEEEEE
Confidence            888999999999998864                    5688999999999999953        4        345788


Q ss_pred             ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccCCC
Q 008363          332 NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDN  401 (568)
Q Consensus       332 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~  401 (568)
                      .+|...|.+++|+|++.+|++++.||.|++||+.+++.......+. ..+.+.++++++..|++++....
T Consensus       244 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~-~~V~~~~~s~~~~~l~s~s~Dg~  312 (317)
T d1vyhc1         244 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE-HFVTSLDFHKTAPYVVTGSVDQT  312 (317)
T ss_dssp             ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS-SCEEEEEECSSSSCEEEEETTSE
T ss_pred             eCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCC-CCEEEEEEcCCCCEEEEEeCCCe
Confidence            9999999999999999999999999999999998876655433332 23455678888888887665443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.9e-22  Score=195.58  Aligned_cols=223  Identities=13%  Similarity=0.097  Sum_probs=155.7

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc---eeeEEeccCC---ccCCCCceEEEeecce
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR---TMKAIYLSSM---KEGTDPRFVKLEPVFR  169 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~---~~~~l~~~~~---~~~~~~~~v~~~~~~~  169 (568)
                      .+|... |.+++|+++.           .+++++.|++|++|++...+   ....+..+..   .....+..+.++....
T Consensus        43 ~~h~~~-V~~~~~~~~~-----------~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (287)
T d1pgua2          43 QDHSNL-IVSLDNSKAQ-----------EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFT  110 (287)
T ss_dssp             CCCCSC-EEEEECCSTT-----------CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTT
T ss_pred             CCCCCC-EEEEEecCCC-----------eEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccc
Confidence            467774 4488888765           57888889999999876522   1112211111   1111222233333332


Q ss_pred             --ecccccCCcCccceEEEEccCCCCCEEEEEeCCC-eEEEEEccCCCCCCCCceeEEe-eCCCCCeeEEEEccCCCCCC
Q 008363          170 --CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDG-TVALWKFVASDSSIDSRPLLCF-SADTLPIRAVSWAPAESDSD  245 (568)
Q Consensus       170 --~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg-~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~~  245 (568)
                        ..... .+...   ..+++  +++..+++++.|+ .|++|++...      .....+ ..|...|++++|+|++    
T Consensus       111 ~~~~~~~-~~~~~---~~~~~--~~~~~~~v~~~~~~~v~~~~~~~~------~~~~~~~~~~~~~v~~~~~s~~~----  174 (287)
T d1pgua2         111 GDIIKSV-RLNSP---GSAVS--LSQNYVAVGLEEGNTIQVFKLSDL------EVSFDLKTPLRAKPSYISISPSE----  174 (287)
T ss_dssp             CCEEEEE-ECSSC---EEEEE--ECSSEEEEEETTTSCEEEEETTEE------EEEEECSSCCSSCEEEEEECTTS----
T ss_pred             eeeeeec-cccce---eeeee--ccCcceeeeccccceeeeeecccc------ceeeeeeeccCCceeEEEeccCc----
Confidence              11111 11222   23334  4567888888775 7999998744      333333 3578899999999999    


Q ss_pred             CCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCC----------CCEEEEEeCCCcEEEEEccccccCCC
Q 008363          246 SANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPD----------PGCVILSFDDGAMRIVSLLKAAYDVP  314 (568)
Q Consensus       246 ~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~----------~~~l~s~~~dg~I~lwd~~~~~~~~~  314 (568)
                        .+|++|+.|+ |++||+.+.......+.+|...|++++|+|.          +.+|++|+.|++|++||+++.     
T Consensus       175 --~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~-----  247 (287)
T d1pgua2         175 --TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP-----  247 (287)
T ss_dssp             --SEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT-----
T ss_pred             --cccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCC-----
Confidence              8999999998 9999999874444556789999999999875          468999999999999999542     


Q ss_pred             CCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363          315 ATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       315 ~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                        +        ..+..+.+|...|++++|+|++ .|++++.||.|++|++
T Consensus       248 --~--------~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         248 --M--------KIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             --T--------CCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             --C--------eEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence              2        3346778999999999999976 6899999999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.90  E-value=1.1e-22  Score=198.49  Aligned_cols=174  Identities=11%  Similarity=0.116  Sum_probs=133.8

Q ss_pred             cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe-eCCCCCeeEEEEccCCC---------
Q 008363          173 LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF-SADTLPIRAVSWAPAES---------  242 (568)
Q Consensus       173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~---------  242 (568)
                      ++.||...| ++|+|+  |++++|++|+.||+|++||+.++      +++..+ .+|...|.+++|+|++.         
T Consensus         7 ~~~GH~~~V-~~l~~s--~dg~~l~s~s~Dg~v~vWd~~~~------~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~   77 (299)
T d1nr0a2           7 VRYGHNKAI-TALSSS--ADGKTLFSADAEGHINSWDISTG------ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDH   77 (299)
T ss_dssp             EECCCSSCE-EEEEEC--TTSSEEEEEETTSCEEEEETTTC------CEEECSSCSCSSCEEEEEECTTSCEEEEETTTE
T ss_pred             EcCCCCCCc-EEEEEC--CCCCEEEEEcCCCeEEEEECCCC------cEEEEEcCCCCCcEEEEEeeccceeecccceee
Confidence            348999999 999999  88999999999999999999866      344433 24555555555555540         


Q ss_pred             ------------------------------------------------------------------CCCCCcEEEEEcCC
Q 008363          243 ------------------------------------------------------------------DSDSANVILTAGHG  256 (568)
Q Consensus       243 ------------------------------------------------------------------~~~~~~~las~s~d  256 (568)
                                                                                        ...+..+|++++.|
T Consensus        78 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d  157 (299)
T d1nr0a2          78 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQD  157 (299)
T ss_dssp             EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETT
T ss_pred             EEEeccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                                                              00022577777777


Q ss_pred             C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCC
Q 008363          257 G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS  335 (568)
Q Consensus       257 ~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~  335 (568)
                      + |++||+++..........|...|++++|+|++.+|++++.|+.|++||+..        +..+     ..+..+.+|.
T Consensus       158 g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~--------~~~~-----~~~~~~~~h~  224 (299)
T d1nr0a2         158 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN--------NFEL-----AHTNSWTFHT  224 (299)
T ss_dssp             SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGG--------TTEE-----SCCCCCCCCS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc--------cccc-----cccccccccc
Confidence            7 888887765222233446889999999999999999999999999999954        2221     2234667899


Q ss_pred             CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363          336 FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       336 ~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~  368 (568)
                      ..|++++|+|++.+|++|+.||.|++||+.+..
T Consensus       225 ~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~  257 (299)
T d1nr0a2         225 AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS  257 (299)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred             cccccccccccccceEEEcCCCEEEEEECCCCC
Confidence            999999999999999999999999999998654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.4e-22  Score=203.72  Aligned_cols=213  Identities=13%  Similarity=0.151  Sum_probs=146.6

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      .++.++|.++..     .....++++++.||+|++|++.........     ..........+..   .......+...+
T Consensus       121 ~~~~~~~~~~~~-----~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~  187 (393)
T d1sq9a_         121 SFWALKWGASND-----RLLSHRLVATDVKGTTYIWKFHPFADESNS-----LTLNWSPTLELQG---TVESPMTPSQFA  187 (393)
T ss_dssp             CEEEEEEECCC---------CEEEEEEETTSCEEEEEEESSSSHHHH-----TTTCCCCEEEEEE---EECCSSSSCCCC
T ss_pred             ceEEEEEecCCC-----cccccEEEEEcCCCcEEEEEeecCCcccce-----eeeeeccceeccc---ceecccCCCCcE
Confidence            345788887652     112268999999999999998642111000     0011111111111   111224455566


Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC----
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG----  257 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~----  257 (568)
                       ++++|+  |++ +||+|+.||+|+|||+.++...........+.+|..+|++|+|+|++      .+|++|+.|+    
T Consensus       188 -~~v~~s--~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg------~~l~sgs~D~t~~~  257 (393)
T d1sq9a_         188 -TSVDIS--ERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG------SLLAIAHDSNSFGC  257 (393)
T ss_dssp             -CEEEEC--TTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST------TEEEEEEEETTEEE
T ss_pred             -EEEEEC--CCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccc------ceeeeecCCCCcce
Confidence             899999  776 99999999999999998762211111223455799999999999999      8999998873    


Q ss_pred             EEEEECCCCCcceeee-------------CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcc
Q 008363          258 LKFWDIRDPFRPLWDI-------------HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTK  324 (568)
Q Consensus       258 v~lwD~~~~~~~~~~~-------------~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~  324 (568)
                      |++||+.++ ..+..+             .+|...|++|+|+|++++|++++.|++|+|||++        +|+      
T Consensus       258 i~lwd~~~g-~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~--------~g~------  322 (393)
T d1sq9a_         258 ITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK--------TKE------  322 (393)
T ss_dssp             EEEEETTTC-CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT--------TTE------
T ss_pred             eeecccccc-eeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECC--------CCC------
Confidence            899999977 444443             4799999999999999999999999999999994        363      


Q ss_pred             ccceEEEecCCCCEE----EEEEecCCCEEEEEe
Q 008363          325 QQGLHLVNCSSFAIW----SVQVSRLTGMVAYCS  354 (568)
Q Consensus       325 ~~~l~~~~~h~~~V~----~l~~sp~~~~l~s~s  354 (568)
                        ++.++.+|...|.    .++|+|++..+++++
T Consensus       323 --~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         323 --RITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             --EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             --EEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence              4578899987664    467777776665443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=4.3e-22  Score=193.11  Aligned_cols=250  Identities=9%  Similarity=-0.001  Sum_probs=160.3

Q ss_pred             EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCce-----eeEEeccCC---ccCCCCceEE
Q 008363           92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRT-----MKAIYLSSM---KEGTDPRFVK  163 (568)
Q Consensus        92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~-----~~~l~~~~~---~~~~~~~~v~  163 (568)
                      +..+.+|.+.+ .+++|+|              |++|+.||+|++||+.++..     +..+.....   ++++.+..++
T Consensus         6 i~~l~gH~~~I-~~l~~s~--------------l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~~~~~~~s~s~D~~v~   70 (287)
T d1pgua2           6 LKTISGHNKGI-TALTVNP--------------LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLK   70 (287)
T ss_dssp             EEEECCCSSCE-EEEETTT--------------TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEE
T ss_pred             eEEECCCCCce-EEEEECc--------------EEEEeCCCeEEEEECCCCCCCCCCCEEEEEecCCCeEEEEeeccccc
Confidence            34567999955 4999953              79999999999999886321     111111111   3445566667


Q ss_pred             EeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCC
Q 008363          164 LEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESD  243 (568)
Q Consensus       164 ~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~  243 (568)
                      +|+....     .+...+ .++.++  +++..++ .+.++.+.+|+....      ..+..+..+ ..+  .++++++  
T Consensus        71 ~w~~~~~-----~~~~~~-~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~-~~~--~~~~~~~--  130 (287)
T d1pgua2          71 VNGITKH-----EFGSQP-KVASAN--NDGFTAV-LTNDDDLLILQSFTG------DIIKSVRLN-SPG--SAVSLSQ--  130 (287)
T ss_dssp             ETTEEEE-----ECSSCE-EEEEEC--SSSEEEE-EETTSEEEEEETTTC------CEEEEEECS-SCE--EEEEECS--
T ss_pred             ccccccc-----ccccce-eeeeec--cCCceEE-Eeecccceeeeccce------eeeeecccc-cee--eeeeccC--
Confidence            7665431     112223 566665  5553333 444556777776654      455555432 333  4556666  


Q ss_pred             CCCCcEEEEEcCC-C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCcc
Q 008363          244 SDSANVILTAGHG-G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFA  321 (568)
Q Consensus       244 ~~~~~~las~s~d-~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~  321 (568)
                          ..+++++.+ + |++|++............|...+++++|+|++.+|++|+.||.|++||+..        +..  
T Consensus       131 ----~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~--------~~~--  196 (287)
T d1pgua2         131 ----NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS--------REV--  196 (287)
T ss_dssp             ----SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------TEE--
T ss_pred             ----cceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecc--------ccc--
Confidence                566666554 5 999999865333333446788899999999999999999999999999954        221  


Q ss_pred             CccccceEEEecCCCCEEEEEEecC----------CCEEEEEeCCCeEEEEEcCCC-eeeccCCCCCcceeeeecccCCC
Q 008363          322 GTKQQGLHLVNCSSFAIWSVQVSRL----------TGMVAYCSADGTVHRFQLTAK-AVEKDHSRNRPMHFLCGSVTEDE  390 (568)
Q Consensus       322 ~~~~~~l~~~~~h~~~V~~l~~sp~----------~~~l~s~s~Dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~s~~~~~  390 (568)
                           ....+.+|...|.+++|+|.          +.+|++|+.|++|+|||+... ........+.. ...+..+.+++
T Consensus       197 -----~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~-~V~~v~~~~~~  270 (287)
T d1pgua2         197 -----KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD-GVNNLLWETPS  270 (287)
T ss_dssp             -----EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT-CEEEEEEEETT
T ss_pred             -----ccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCC-CeEEEEECCCC
Confidence                 12245689999999999875          468999999999999999753 23332223332 23444556554


Q ss_pred             CceEEcc
Q 008363          391 SAITVNT  397 (568)
Q Consensus       391 ~~i~~~~  397 (568)
                       .+....
T Consensus       271 -~l~s~g  276 (287)
T d1pgua2         271 -TLVSSG  276 (287)
T ss_dssp             -EEEEEE
T ss_pred             -EEEEEE
Confidence             344433

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.85  E-value=8.8e-20  Score=181.66  Aligned_cols=157  Identities=6%  Similarity=-0.021  Sum_probs=130.4

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCC--cEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNG--SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML  173 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg--~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~  173 (568)
                      ++|.+. +.+++|+|++          ++|++++.+.  .|++||+.++.....                          
T Consensus        39 ~~~~~~-v~~~~~spDg----------~~l~~~~~~~g~~v~v~d~~~~~~~~~--------------------------   81 (360)
T d1k32a3          39 VPEPLR-IRYVRRGGDT----------KVAFIHGTREGDFLGIYDYRTGKAEKF--------------------------   81 (360)
T ss_dssp             CSCCSC-EEEEEECSSS----------EEEEEEEETTEEEEEEEETTTCCEEEC--------------------------
T ss_pred             ccCCCC-EEEEEECCCC----------CEEEEEEcCCCCEEEEEECCCCcEEEe--------------------------
Confidence            578884 5599999999          7888766553  799999998665432                          


Q ss_pred             ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363          174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA  253 (568)
Q Consensus       174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~  253 (568)
                       ..|...| .+++|+  |+|.+|++++.++.+++|++...      .....+..|...+.+++|+|++      ++||.+
T Consensus        82 -~~~~~~v-~~~~~s--pdg~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~spdg------~~la~~  145 (360)
T d1k32a3          82 -EENLGNV-FAMGVD--RNGKFAVVANDRFEIMTVDLETG------KPTVIERSREAMITDFTISDNS------RFIAYG  145 (360)
T ss_dssp             -CCCCCSE-EEEEEC--TTSSEEEEEETTSEEEEEETTTC------CEEEEEECSSSCCCCEEECTTS------CEEEEE
T ss_pred             -eCCCceE-Eeeeec--ccccccceecccccccccccccc------ceeeeeecccccccchhhccce------eeeeee
Confidence             6788888 999999  89999999999999999999876      7778888999999999999999      788754


Q ss_pred             c----------CCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 008363          254 G----------HGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLL  307 (568)
Q Consensus       254 s----------~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~  307 (568)
                      +          .++ +++||+.+. .. ..+..|...+..++|+|+|++|++++.++.+.+||..
T Consensus       146 ~~~~~~~~~~~~~~~~~v~d~~~~-~~-~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         146 FPLKHGETDGYVMQAIHVYDMEGR-KI-FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             EEECSSTTCSCCEEEEEEEETTTT-EE-EECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             ccccccceeeccccceeeeccccC-ce-eeecccccccccccccCCCCEEEEEeCCCceEccccc
Confidence            3          234 899999875 33 3445667788999999999999999999999999854

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.82  E-value=2e-19  Score=179.06  Aligned_cols=193  Identities=9%  Similarity=0.026  Sum_probs=158.7

Q ss_pred             eEEEEcc-CCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          104 WDVKWKP-YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       104 ~~v~~sp-~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      +.-.||| +|          +++|+++ +|.|+|||+.++...+                            .+|...| 
T Consensus         6 ~~~~fSP~dG----------~~~a~~~-~g~v~v~d~~~~~~~~----------------------------~~~~~~v-   45 (360)
T d1k32a3           6 FAEDFSPLDG----------DLIAFVS-RGQAFIQDVSGTYVLK----------------------------VPEPLRI-   45 (360)
T ss_dssp             GEEEEEECGG----------GCEEEEE-TTEEEEECTTSSBEEE----------------------------CSCCSCE-
T ss_pred             hcccccCCCC----------CEEEEEE-CCeEEEEECCCCcEEE----------------------------ccCCCCE-
Confidence            3567999 88          7888876 4899999998866542                            3577888 


Q ss_pred             eEEEEccCCCCCEEEEEeCCC--eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDG--TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LK  259 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~  259 (568)
                      .+++|+  |+|++|++++.+.  .|++||+.++       .+..+..|...|.+++|+|++      ++|++++.++ ++
T Consensus        46 ~~~~~s--pDg~~l~~~~~~~g~~v~v~d~~~~-------~~~~~~~~~~~v~~~~~spdg------~~l~~~~~~~~~~  110 (360)
T d1k32a3          46 RYVRRG--GDTKVAFIHGTREGDFLGIYDYRTG-------KAEKFEENLGNVFAMGVDRNG------KFAVVANDRFEIM  110 (360)
T ss_dssp             EEEEEC--SSSEEEEEEEETTEEEEEEEETTTC-------CEEECCCCCCSEEEEEECTTS------SEEEEEETTSEEE
T ss_pred             EEEEEC--CCCCEEEEEEcCCCCEEEEEECCCC-------cEEEeeCCCceEEeeeecccc------cccceeccccccc
Confidence            999999  8999988776553  7999999865       345677899999999999999      8999999999 99


Q ss_pred             EEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe----------CCCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363          260 FWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF----------DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH  329 (568)
Q Consensus       260 lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~----------~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~  329 (568)
                      +|++.+. .....+..|...+.+++|+|+|++|+.++          .++.+++||+..        ++.         .
T Consensus       111 ~~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~--------~~~---------~  172 (360)
T d1k32a3         111 TVDLETG-KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG--------RKI---------F  172 (360)
T ss_dssp             EEETTTC-CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT--------TEE---------E
T ss_pred             ccccccc-ceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeecccc--------Cce---------e
Confidence            9999977 66677778888899999999999998654          345689999943        322         3


Q ss_pred             EEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363          330 LVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV  369 (568)
Q Consensus       330 ~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~  369 (568)
                      .+..|...+..++|+|+|++|++++.|+.+.+|+......
T Consensus       173 ~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~  212 (360)
T d1k32a3         173 AATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNF  212 (360)
T ss_dssp             ECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCE
T ss_pred             eecccccccccccccCCCCEEEEEeCCCceEcccccccce
Confidence            5556778889999999999999999999999999865443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=5.2e-19  Score=173.26  Aligned_cols=238  Identities=10%  Similarity=0.026  Sum_probs=166.0

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC---------------cc
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM---------------KE  155 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~---------------~~  155 (568)
                      .+....+|.+. |.+++|+|++.         .+|++|+.||.|++|++...........+..               +.
T Consensus        48 ~~~~~~~h~~~-V~~v~f~~~~~---------~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (342)
T d1yfqa_          48 DLLQSLRYKHP-LLCCNFIDNTD---------LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIA  117 (342)
T ss_dssp             EEEEEEECSSC-EEEEEEEESSS---------EEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEE
T ss_pred             EEEEecCCCCC-EEEEEEeCCCC---------CEEEEcccccceeeeecccccccccccccccccccccccccccccccc
Confidence            44555689884 55999999864         6899999999999999988665544433322               44


Q ss_pred             CCCCceEEEeeccee------cccccCCcCcc-ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC
Q 008363          156 GTDPRFVKLEPVFRC------SMLKCGGTQSI-PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD  228 (568)
Q Consensus       156 ~~~~~~v~~~~~~~~------~~~~~~h~~~V-~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h  228 (568)
                      ++.+..+.+|+....      ......+.... ...+.+.  +.+..+++++.||.|++||+.....   .........+
T Consensus       118 ~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~---~~~~~~~~~~  192 (342)
T d1yfqa_         118 ASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD--TNSSRLIVGMNNSQVQWFRLPLCED---DNGTIEESGL  192 (342)
T ss_dssp             EETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE--ECSSEEEEEESTTEEEEEESSCCTT---CCCEEEECSC
T ss_pred             cccccccceeeccccccceeeecccccccccceeeeeeee--ccCCceeeecCCCcEEEEecccCcc---cceeeeeccc
Confidence            566778888876431      11112222111 1344444  5678999999999999999986632   1222334455


Q ss_pred             CCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcce--------------eeeCCCCCCeEEEEEcCCCCEEE
Q 008363          229 TLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPL--------------WDIHPAPKFIYGLDWLPDPGCVI  293 (568)
Q Consensus       229 ~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~--------------~~~~~h~~~i~~l~~sp~~~~l~  293 (568)
                      ...+.++.+.+..     ...+++++.|+ +.+|++.......              .....|...|++|+|+|++++|+
T Consensus       193 ~~~~~~~~~~~~~-----~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~la  267 (342)
T d1yfqa_         193 KYQIRDVALLPKE-----QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY  267 (342)
T ss_dssp             SSCEEEEEECSGG-----GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEE
T ss_pred             ccceeeeEeecCC-----CCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEE
Confidence            6667777776654     37899999999 9999987542111              11235677899999999999999


Q ss_pred             EEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          294 LSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       294 s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      +|+.||.|+|||+++        ++        .+..+..+ ..+..++|+|++.+|++++.|+++++|...
T Consensus       268 sg~~Dg~v~vWD~~~--------~~--------~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         268 TAGSDGIISCWNLQT--------RK--------KIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             EEETTSCEEEEETTT--------TE--------EEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             EECCCCEEEEEECCC--------Cc--------EEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence            999999999999954        32        23455433 344567888999999999999998888763

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.1e-18  Score=171.19  Aligned_cols=234  Identities=12%  Similarity=0.174  Sum_probs=163.8

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEe
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC  200 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs  200 (568)
                      ..++.|-.+..+..++.. ++.+        ++++.|+.+++|+..+  +...+.+|...| ++++|+  +  ++|++|+
T Consensus         9 ~~~l~GH~~~V~s~~~~~-g~~l--------~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V-~~v~~~--~--~~l~s~s   74 (342)
T d2ovrb2           9 PKVLKGHDDHVITCLQFC-GNRI--------VSGSDDNTLKVWSAVTGKCLRTLVGHTGGV-WSSQMR--D--NIIISGS   74 (342)
T ss_dssp             CEEEECSTTSCEEEEEEE-TTEE--------EEEETTSCEEEEETTTCCEEEECCCCSSCE-EEEEEE--T--TEEEEEE
T ss_pred             CEEECCcCCceEEEEEEC-CCEE--------EEEeCCCeEEEEECCCCCEEEEEeCCCCCE-EEEEeC--C--Cccccce
Confidence            345555555544555543 3333        3577899999999866  667788999999 999998  4  4999999


Q ss_pred             CCCeEEEEEccCCCCC----------------------------------------------------------------
Q 008363          201 HDGTVALWKFVASDSS----------------------------------------------------------------  216 (568)
Q Consensus       201 ~Dg~I~iwd~~~~~~~----------------------------------------------------------------  216 (568)
                      .|+++++|+.......                                                                
T Consensus        75 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (342)
T d2ovrb2          75 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA  154 (342)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEE
T ss_pred             ecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeec
Confidence            9999999986543210                                                                


Q ss_pred             ----------CCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEE
Q 008363          217 ----------IDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDW  285 (568)
Q Consensus       217 ----------~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~  285 (568)
                                ....++..+.+|...+..+  .+++      .+|++++.|+ |++||++.. .++..+.+|...+.++++
T Consensus       155 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~------~~l~s~~~dg~i~~~d~~~~-~~~~~~~~~~~~v~~~~~  225 (342)
T d2ovrb2         155 YDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDG------IHVVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTSGMEL  225 (342)
T ss_dssp             TTSCEEEEEGGGTEEEEEECCCSSCEEEE--EECS------SEEEEEETTSCEEEEETTTC-CEEEEECCCCSCEEEEEE
T ss_pred             CCCeEEEeecccceeeEEEcCcccccccc--cCCC------CEEEEEeCCCeEEEeecccc-eeeeEecccccceeEEec
Confidence                      0011223334454444443  3445      7899999999 999999987 788889999999998887


Q ss_pred             cCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe---cCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 008363          286 LPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN---CSSFAIWSVQVSRLTGMVAYCSADGTVHRF  362 (568)
Q Consensus       286 sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~---~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iw  362 (568)
                      +  +++|++++.|+.|++||+..        ++.        ...+.   .|...+.++.++  +.++++|+.||+|++|
T Consensus       226 ~--~~~l~s~s~d~~i~iwd~~~--------~~~--------~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iw  285 (342)
T d2ovrb2         226 K--DNILVSGNADSTVKIWDIKT--------GQC--------LQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLW  285 (342)
T ss_dssp             E--TTEEEEEETTSCEEEEETTT--------CCE--------EEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEE
T ss_pred             C--CCEEEEEcCCCEEEEEeccc--------ccc--------cccccccceeeeceeecccC--CCeeEEEcCCCEEEEE
Confidence            7  46999999999999999954        222        22333   456677777764  5799999999999999


Q ss_pred             EcCCCeeeccCCC----CCcceeeeecccCCCCceEEcccC
Q 008363          363 QLTAKAVEKDHSR----NRPMHFLCGSVTEDESAITVNTPL  399 (568)
Q Consensus       363 d~~~~~~~~~~~~----~~~~~~~~~s~~~~~~~i~~~~~~  399 (568)
                      |+.+++..+....    .....+.+.++++++..+++++..
T Consensus       286 d~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~d  326 (342)
T d2ovrb2         286 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN  326 (342)
T ss_dssp             ETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSS
T ss_pred             ECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence            9998876543221    112234556677777666666543

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.2e-16  Score=152.82  Aligned_cols=183  Identities=13%  Similarity=0.180  Sum_probs=135.1

Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG  254 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s  254 (568)
                      .+|...| +|++|    +|++||+|+.||+|+|||+.+.      +++.++.+|.+.|.+|+|  ++      ++|++|+
T Consensus        12 ~~~~~~V-~c~~~----d~~~l~sgs~Dg~i~vWd~~~~------~~~~~l~~H~~~V~~v~~--~~------~~l~s~s   72 (293)
T d1p22a2          12 SETSKGV-YCLQY----DDQKIVSGLRDNTIKIWDKNTL------ECKRILTGHTGSVLCLQY--DE------RVIITGS   72 (293)
T ss_dssp             CSSCCCE-EEEEC----CSSEEEEEESSSCEEEEESSSC------CEEEEECCCSSCEEEEEC--CS------SEEEEEE
T ss_pred             CCCCCCE-EEEEE----cCCEEEEEeCCCeEEEEECCCC------cEEEEEecCCCCEeeeec--cc------ceeeccc
Confidence            6788888 88874    5789999999999999999876      889999999999999987  44      6999999


Q ss_pred             CCC-EEEEECCCCCcc------------------------------------------eeeeCCCCCCeEEEEEcCCCCE
Q 008363          255 HGG-LKFWDIRDPFRP------------------------------------------LWDIHPAPKFIYGLDWLPDPGC  291 (568)
Q Consensus       255 ~d~-v~lwD~~~~~~~------------------------------------------~~~~~~h~~~i~~l~~sp~~~~  291 (568)
                      .|+ |++|++......                                          ...+..|...|..+.+.  ...
T Consensus        73 ~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~  150 (293)
T d1p22a2          73 SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKY  150 (293)
T ss_dssp             TTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTE
T ss_pred             ccccccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccc
Confidence            999 999999765211                                          01123455566666555  457


Q ss_pred             EEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          292 VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       292 l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                      +++++.|+.|++||++.        ++        .+..+.+|...|..+.++  +.+|++++.||.|++||+.+.....
T Consensus       151 ~~~~s~d~~i~~~d~~~--------~~--------~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~  212 (293)
T d1p22a2         151 IVSASGDRTIKVWNTST--------CE--------FVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR  212 (293)
T ss_dssp             EEEEETTSEEEEEETTT--------CC--------EEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEE
T ss_pred             cccccCCCceeeecCCC--------Cc--------EEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeee
Confidence            88889999999999953        43        346888899999888775  5789999999999999998776554


Q ss_pred             cCCCCCcceeeeecccCCCCceEEcccC
Q 008363          372 DHSRNRPMHFLCGSVTEDESAITVNTPL  399 (568)
Q Consensus       372 ~~~~~~~~~~~~~s~~~~~~~i~~~~~~  399 (568)
                      ..........   .++.++..++.+...
T Consensus       213 ~~~~~~~~v~---~~~~~~~~l~sg~~d  237 (293)
T d1p22a2         213 VLEGHEELVR---CIRFDNKRIVSGAYD  237 (293)
T ss_dssp             EECCCSSCEE---EEECCSSEEEEEETT
T ss_pred             eecccceeee---eccccceEEEEEcCC
Confidence            4332222211   234445555554443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.73  E-value=2.9e-15  Score=144.42  Aligned_cols=235  Identities=10%  Similarity=0.026  Sum_probs=164.9

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEE-EEEeCCCcEEEEECCCCceeeEEeccCC--------------cc
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYL-AVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KE  155 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~l-as~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~  155 (568)
                      ++...+...+.+ +.++|+|+|          ++| ++++.++.|++||+.+++.+..+..+..              ..
T Consensus        23 ~~~~~i~~g~~p-~~va~spdG----------~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (301)
T d1l0qa2          23 KVTATIPVGSNP-MGAVISPDG----------TKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVT   91 (301)
T ss_dssp             EEEEEEECSSSE-EEEEECTTS----------SEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEE
T ss_pred             eEEEEEECCCCc-eEEEEeCCC----------CEEEEEECCCCEEEEEECCCCceeeeeecccccccccccccccccccc
Confidence            344444444434 499999999          665 5677899999999999998888765443              23


Q ss_pred             CCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEE-EEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCe
Q 008363          156 GTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLL-AGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPI  232 (568)
Q Consensus       156 ~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V  232 (568)
                      +..+..+.+++...  +..... +.... .++.|+  +++..++ ++..++.+.+|+..+.      ..+..+.. ...+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~--~dg~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~  160 (301)
T d1l0qa2          92 NMASSTLSVIDTTSNTVAGTVK-TGKSP-LGLALS--PDGKKLYVTNNGDKTVSVINTVTK------AVINTVSV-GRSP  160 (301)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEE-CSSSE-EEEEEC--TTSSEEEEEETTTTEEEEEETTTT------EEEEEEEC-CSSE
T ss_pred             ccccceeeecccccceeeeecc-ccccc-eEEEee--cCCCeeeeeeccccceeeeecccc------ceeeeccc-CCCc
Confidence            34555566665543  222222 33343 788888  7887764 5566889999999866      66666654 4558


Q ss_pred             eEEEEccCCCCCCCCcEEEEEcCC-C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEcc
Q 008363          233 RAVSWAPAESDSDSANVILTAGHG-G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD---DGAMRIVSLL  307 (568)
Q Consensus       233 ~~v~~~p~~~~~~~~~~las~s~d-~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~---dg~I~lwd~~  307 (568)
                      ..++++|++      ..+++++.+ . +.+|+.... .....+. ....+..++|++++..+++++.   ++.|++||+.
T Consensus       161 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~  232 (301)
T d1l0qa2         161 KGIAVTPDG------TKVYVANFDSMSISVIDTVTN-SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG  232 (301)
T ss_dssp             EEEEECTTS------SEEEEEETTTTEEEEEETTTT-EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred             eEEEeeccc------cceeeecccccccccccccce-eeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecC
Confidence            899999998      666666555 5 778887755 4444443 3455788999999998877643   5789999994


Q ss_pred             ccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEE-EEEeCCCeEEEEEcCCCeeecc
Q 008363          308 KAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMV-AYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       308 ~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l-~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                      +        ++.        +..+.. ...+++++|+|+|++| ++++.|+.|++||+.++++...
T Consensus       233 t--------~~~--------~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~  281 (301)
T d1l0qa2         233 T--------NKI--------TARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITAT  281 (301)
T ss_dssp             T--------TEE--------EEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             C--------CeE--------EEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEE
Confidence            3        433        245543 3567999999999876 6777899999999998876654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.70  E-value=1.2e-15  Score=156.47  Aligned_cols=247  Identities=8%  Similarity=0.029  Sum_probs=161.1

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP  182 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~  182 (568)
                      ++.++|+|+|          ++|++++.||+|++||+.+++......-                     ....+|...+ 
T Consensus        64 ~~~vafSPDG----------k~l~~~~~d~~v~vwd~~t~~~~~~~~i---------------------~~~~~~~~~~-  111 (426)
T d1hzua2          64 VHISRMSASG----------RYLLVIGRDARIDMIDLWAKEPTKVAEI---------------------KIGIEARSVE-  111 (426)
T ss_dssp             EEEEEECTTS----------CEEEEEETTSEEEEEETTSSSCEEEEEE---------------------ECCSEEEEEE-
T ss_pred             eeEEEECCCC----------CEEEEEeCCCCEEEEEccCCceeEEEEE---------------------eCCCCCcceE-
Confidence            5699999999          8999999999999999999775533210                     0014555555 


Q ss_pred             eEEEEccCCCCCEEE-EEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCC-----------eeEEEEccCCCCCCCCcEE
Q 008363          183 LTMEWSTSPPHDYLL-AGCHDGTVALWKFVASDSSIDSRPLLCFSADTLP-----------IRAVSWAPAESDSDSANVI  250 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~-----------V~~v~~~p~~~~~~~~~~l  250 (568)
                      .+++|+  |||++|+ ++..++++++||..+.      .++..+..|...           ...+.+++++      ..+
T Consensus       112 ~s~~~s--pDG~~l~v~~~~~~~v~i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~------~~~  177 (426)
T d1hzua2         112 SSKFKG--YEDRYTIAGAYWPPQFAIMDGETL------EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH------PEF  177 (426)
T ss_dssp             ECCSTT--CTTTEEEEEEEESSEEEEEETTTC------CEEEEEECCEECSSSCCEESCCCEEEEEECSSS------SEE
T ss_pred             Eeeeec--CCCCEEEEeecCCCeEEEEcCCcc------ceeEEeeccCCCccceeecCCCceeEEEECCCC------CEE
Confidence            677777  8999865 4558999999999876      666666555443           3445555555      344


Q ss_pred             EEEcCC-C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccC-------CCCC----
Q 008363          251 LTAGHG-G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYD-------VPAT----  316 (568)
Q Consensus       251 as~s~d-~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~-------~~~~----  316 (568)
                      +....+ + +.+++............++...+..+.|+|++++++++.. +..+.+|+......-       .+..    
T Consensus       178 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (426)
T d1hzua2         178 IVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA  257 (426)
T ss_dssp             EEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCE
T ss_pred             EEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCccccccee
Confidence            433333 3 6666665543333333466777899999999999888865 566777876432110       0000    


Q ss_pred             ------------------CCC---------ccCccccceEEEecCCCCEEEEEEecCCCEEEE-------EeCCCeEEEE
Q 008363          317 ------------------GKP---------FAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAY-------CSADGTVHRF  362 (568)
Q Consensus       317 ------------------g~~---------~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s-------~s~Dg~v~iw  362 (568)
                                        +..         ......+....+.+|...++.++|+|++++|++       ++.|++|+||
T Consensus       258 ~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vw  337 (426)
T d1hzua2         258 NFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVF  337 (426)
T ss_dssp             EEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEE
T ss_pred             eeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEE
Confidence                              000         000011345678899999999999999999994       5568999999


Q ss_pred             EcCCCeeeccC--------CCCCcceeeeecccCCCCceEE
Q 008363          363 QLTAKAVEKDH--------SRNRPMHFLCGSVTEDESAITV  395 (568)
Q Consensus       363 d~~~~~~~~~~--------~~~~~~~~~~~s~~~~~~~i~~  395 (568)
                      |+.++......        ...........++++||..+.+
T Consensus       338 d~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~v  378 (426)
T d1hzua2         338 DLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWF  378 (426)
T ss_dssp             ETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEE
T ss_pred             ECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEE
Confidence            99877543221        0111222344578999987754

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.67  E-value=6.8e-15  Score=144.02  Aligned_cols=202  Identities=17%  Similarity=0.120  Sum_probs=145.6

Q ss_pred             eeeEEEEccCCCCcccccCcccEE-EEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYL-AVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQS  180 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~l-as~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~  180 (568)
                      .+.+++|+|+|          ++| ++++.++.|.+||+.+++.+..+..+..                     ..+...
T Consensus        35 ~~~~i~~spDg----------~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~---------------------~~~~~~   83 (337)
T d1pbyb_          35 TPMVPMVAPGG----------RIAYATVNKSESLVKIDLVTGETLGRIDLSTP---------------------EERVKS   83 (337)
T ss_dssp             CCCCEEECTTS----------SEEEEEETTTTEEEEEETTTCCEEEEEECCBT---------------------TEEEEC
T ss_pred             CccEEEECCCC----------CEEEEEECCCCeEEEEECCCCcEEEEEecCCC---------------------cccccc
Confidence            45589999999          665 5677899999999999988877633210                     122333


Q ss_pred             cceEEEEccCCCCCEEEEEe------------CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCc
Q 008363          181 IPLTMEWSTSPPHDYLLAGC------------HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSAN  248 (568)
Q Consensus       181 V~~~v~~s~~~~g~~l~sgs------------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~  248 (568)
                      + ..++|+  |++.++++++            .++.+.+||..+.      .....+.. ...+..++|+|++      .
T Consensus        84 ~-~~v~~s--~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~~-~~~~~~~~~s~dg------~  147 (337)
T d1pbyb_          84 L-FGAALS--PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL------SRRKAFEA-PRQITMLAWARDG------S  147 (337)
T ss_dssp             T-TCEEEC--TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT------EEEEEEEC-CSSCCCEEECTTS------S
T ss_pred             e-eeEEEc--CCCcEEEEeecCCcceeeeccccccceeeccccCC------eEEEeccc-cCCceEEEEcCCC------C
Confidence            3 788988  8899888776            4678889998866      66666654 4568899999999      7


Q ss_pred             EEEEEcCCCEEEEECCCCCcce----------------------------------------------------------
Q 008363          249 VILTAGHGGLKFWDIRDPFRPL----------------------------------------------------------  270 (568)
Q Consensus       249 ~las~s~d~v~lwD~~~~~~~~----------------------------------------------------------  270 (568)
                      ++++++.+ +.+||..+. ...                                                          
T Consensus       148 ~l~~~~~~-~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (337)
T d1pbyb_         148 KLYGLGRD-LHVMDPEAG-TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD  225 (337)
T ss_dssp             CEEEESSS-EEEEETTTT-EEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred             EEEEEcCC-cceeeeecC-cEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEE
Confidence            77777543 667776543 111                                                          


Q ss_pred             --------eeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEE
Q 008363          271 --------WDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQ  342 (568)
Q Consensus       271 --------~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~  342 (568)
                              ..+..+...+..+.++|++.+++.+  ++.|++||+.+        ++.        +..+. +...+.+++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~--------~~~--------~~~~~-~~~~~~~~~  286 (337)
T d1pbyb_         226 LETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK--------NAS--------IKRVP-LPHSYYSVN  286 (337)
T ss_dssp             TTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT--------TEE--------EEEEE-CSSCCCEEE
T ss_pred             cCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCC--------CcE--------EEEEc-CCCCEEEEE
Confidence                    1111234445667778888877665  58899999953        433        23443 566789999


Q ss_pred             EecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          343 VSRLTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       343 ~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                      |+|+|++|++++.|+.|++||+.+.+...
T Consensus       287 ~s~dG~~l~v~~~~~~i~v~D~~t~~~v~  315 (337)
T d1pbyb_         287 VSTDGSTVWLGGALGDLAAYDAETLEKKG  315 (337)
T ss_dssp             ECTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred             ECCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence            99999999999999999999998766544

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.66  E-value=2.4e-15  Score=154.44  Aligned_cols=159  Identities=10%  Similarity=0.049  Sum_probs=113.6

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      .++.++|+|+|          ++|++++.||.|++||+.+++......-                     ....+|...+
T Consensus        63 ~~~~v~fSpDG----------~~l~~~s~dg~v~~~d~~t~~~~~~~~i---------------------~~~~~~~~~~  111 (432)
T d1qksa2          63 AVHISRLSASG----------RYLFVIGRDGKVNMIDLWMKEPTTVAEI---------------------KIGSEARSIE  111 (432)
T ss_dssp             CEEEEEECTTS----------CEEEEEETTSEEEEEETTSSSCCEEEEE---------------------ECCSEEEEEE
T ss_pred             CeeEEEECCCC----------CEEEEEcCCCCEEEEEeeCCCceEEEEE---------------------ecCCCCCCeE
Confidence            35699999999          8999999999999999988654322100                     0013444444


Q ss_pred             ceEEEEccCCCCCEE-EEEeCCCeEEEEEccCCCCCCCCceeEEeeCC-----------CCCeeEEEEccCCCCCCCCcE
Q 008363          182 PLTMEWSTSPPHDYL-LAGCHDGTVALWKFVASDSSIDSRPLLCFSAD-----------TLPIRAVSWAPAESDSDSANV  249 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-----------~~~V~~v~~~p~~~~~~~~~~  249 (568)
                       ++..|+  |||++| ++++.+++|+|||..+.      +++..+..|           ......+.++|++.     .+
T Consensus       112 -~s~~~S--pDG~~l~vs~~~~~~v~i~d~~t~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~-----~~  177 (432)
T d1qksa2         112 -TSKMEG--WEDKYAIAGAYWPPQYVIMDGETL------EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP-----EF  177 (432)
T ss_dssp             -ECCSTT--CTTTEEEEEEEETTEEEEEETTTC------CEEEEEECCEECTTTCCEESCCCEEEEEECSSSS-----EE
T ss_pred             -EecccC--CCCCEEEEEcCCCCeEEEEeCccc------cceeeeccCCccccceeccCCCceeEEEECCCCC-----EE
Confidence             556666  899875 77888999999999877      666655443           45567788999982     45


Q ss_pred             EEEEcCCC-EEEEECCCCCc-ceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEc
Q 008363          250 ILTAGHGG-LKFWDIRDPFR-PLWDIHPAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSL  306 (568)
Q Consensus       250 las~s~d~-v~lwD~~~~~~-~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~  306 (568)
                      +++...++ |.+||..+... .+..+ .+...+..++|+|+|+++++++. ++.|.++|.
T Consensus       178 ~vs~~~~~~i~~~d~~~~~~~~~~~i-~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~  236 (432)
T d1qksa2         178 IVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDT  236 (432)
T ss_dssp             EEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred             EEEEccCCeEEEEEccCCCcceEEEE-cccCccccceECCCCCEEEEeccccceEEEeec
Confidence            56677777 99999987632 22333 34556789999999998887765 556777764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=8.2e-15  Score=150.38  Aligned_cols=192  Identities=9%  Similarity=-0.002  Sum_probs=141.9

Q ss_pred             EEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCC
Q 008363          124 YLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDG  203 (568)
Q Consensus       124 ~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg  203 (568)
                      ++++.+.||+|.|||..+++++..+                          ..|. .+ ..++|+  |||++|++++.||
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~--------------------------~~g~-~~-~~v~fS--pDG~~l~~~s~dg   83 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVL--------------------------DTGY-AV-HISRLS--ASGRYLFVIGRDG   83 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEE--------------------------ECSS-CE-EEEEEC--TTSCEEEEEETTS
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEE--------------------------eCCC-Ce-eEEEEC--CCCCEEEEEcCCC
Confidence            4689999999999999999999887                          3332 34 899999  9999999999999


Q ss_pred             eEEEEEccCCCCCCCCceeEEe---eCCCCCeeEEEEccCCCCCCCCcE-EEEEcCCC-EEEEECCCCCcceeeeCC---
Q 008363          204 TVALWKFVASDSSIDSRPLLCF---SADTLPIRAVSWAPAESDSDSANV-ILTAGHGG-LKFWDIRDPFRPLWDIHP---  275 (568)
Q Consensus       204 ~I~iwd~~~~~~~~~~~~~~~~---~~h~~~V~~v~~~p~~~~~~~~~~-las~s~d~-v~lwD~~~~~~~~~~~~~---  275 (568)
                      +|++||+.+...    .....+   ..|.+.+.+..|+|+|      ++ +++++.++ |++||..+. .++..+..   
T Consensus        84 ~v~~~d~~t~~~----~~~~~i~~~~~~~~~~~s~~~SpDG------~~l~vs~~~~~~v~i~d~~t~-~~~~~~~~~~~  152 (432)
T d1qksa2          84 KVNMIDLWMKEP----TTVAEIKIGSEARSIETSKMEGWED------KYAIAGAYWPPQYVIMDGETL-EPKKIQSTRGM  152 (432)
T ss_dssp             EEEEEETTSSSC----CEEEEEECCSEEEEEEECCSTTCTT------TEEEEEEEETTEEEEEETTTC-CEEEEEECCEE
T ss_pred             CEEEEEeeCCCc----eEEEEEecCCCCCCeEEecccCCCC------CEEEEEcCCCCeEEEEeCccc-cceeeeccCCc
Confidence            999999987632    233333   3455556667778888      65 57777788 999999987 55544432   


Q ss_pred             --------CCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecC
Q 008363          276 --------APKFIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL  346 (568)
Q Consensus       276 --------h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~  346 (568)
                              +......+.++|++..++.+ ..++.|.+||...        ++..      .+..+ .+...+..++|+|+
T Consensus       153 ~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~--------~~~~------~~~~i-~~g~~~~~~~~spd  217 (432)
T d1qksa2         153 TYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD--------LNNL------KTTEI-SAERFLHDGGLDGS  217 (432)
T ss_dssp             CTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTC--------SSEE------EEEEE-ECCSSEEEEEECTT
T ss_pred             cccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccC--------CCcc------eEEEE-cccCccccceECCC
Confidence                    34456788999999887655 5589999999843        2211      11222 35567889999999


Q ss_pred             CCEEEEEeC-CCeEEEEEcCCCeeec
Q 008363          347 TGMVAYCSA-DGTVHRFQLTAKAVEK  371 (568)
Q Consensus       347 ~~~l~s~s~-Dg~v~iwd~~~~~~~~  371 (568)
                      |+++++++. ++.+.+++..+.....
T Consensus       218 g~~~~va~~~~~~v~v~d~~~~~~~~  243 (432)
T d1qksa2         218 HRYFITAANARNKLVVIDTKEGKLVA  243 (432)
T ss_dssp             SCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             CCEEEEeccccceEEEeecccceEEE
Confidence            998777765 5679999998776653

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.62  E-value=3.4e-14  Score=138.87  Aligned_cols=233  Identities=12%  Similarity=0.089  Sum_probs=159.5

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEE-EEEeC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYL-LAGCH  201 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l-~sgs~  201 (568)
                      .+|++++.|++|+|||+.+++.+..+..+                        .+...+ .+++|+  |||++| ++++.
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~------------------------~~~~~~-~~i~~s--pDg~~l~v~~~~   54 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIA------------------------DAGPTP-MVPMVA--PGGRIAYATVNK   54 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECT------------------------TCTTCC-CCEEEC--TTSSEEEEEETT
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECC------------------------CCCCCc-cEEEEC--CCCCEEEEEECC
Confidence            58999999999999999999888776322                        223333 789999  899887 56778


Q ss_pred             CCeEEEEEccCCCCCCCCceeEEeeCCCC-----CeeEEEEccCCCCCCCCcEEEEEcC------------CC-EEEEEC
Q 008363          202 DGTVALWKFVASDSSIDSRPLLCFSADTL-----PIRAVSWAPAESDSDSANVILTAGH------------GG-LKFWDI  263 (568)
Q Consensus       202 Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~~p~~~~~~~~~~las~s~------------d~-v~lwD~  263 (568)
                      ++.|.+||+.++      +.+..+..+..     .+..++|+|++      .++++++.            +. +.+||.
T Consensus        55 ~~~v~v~D~~t~------~~~~~~~~~~~~~~~~~~~~v~~s~dg------~~l~~~~~~~~~~~~~~~~~~~~~~~~d~  122 (337)
T d1pbyb_          55 SESLVKIDLVTG------ETLGRIDLSTPEERVKSLFGAALSPDG------KTLAIYESPVRLELTHFEVQPTRVALYDA  122 (337)
T ss_dssp             TTEEEEEETTTC------CEEEEEECCBTTEEEECTTCEEECTTS------SEEEEEEEEEEECSSCEEECCCEEEEEET
T ss_pred             CCeEEEEECCCC------cEEEEEecCCCcccccceeeEEEcCCC------cEEEEeecCCcceeeeccccccceeeccc
Confidence            999999999977      66666655533     35678999999      67766643            45 889999


Q ss_pred             CCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccC---------C----CCCCCCcc---------
Q 008363          264 RDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYD---------V----PATGKPFA---------  321 (568)
Q Consensus       264 ~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~---------~----~~~g~~~~---------  321 (568)
                      .+. ..+..+.. ...+..++|+|+|+++++++.+  +.+||.......         .    ...+..+.         
T Consensus       123 ~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (337)
T d1pbyb_         123 ETL-SRRKAFEA-PRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVM  198 (337)
T ss_dssp             TTT-EEEEEEEC-CSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEE
T ss_pred             cCC-eEEEeccc-cCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeecccccccee
Confidence            977 66655543 4557889999999999998654  677886432100         0    00000000         


Q ss_pred             ----------------Cc------------cccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccC
Q 008363          322 ----------------GT------------KQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDH  373 (568)
Q Consensus       322 ----------------~~------------~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~  373 (568)
                                      ..            .......+..+...+..+.++|++.+++.+  ++.|++||+.+++.....
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~  276 (337)
T d1pbyb_         199 ATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV  276 (337)
T ss_dssp             EEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE
T ss_pred             eeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEE
Confidence                            00            000011233455667778888888887765  589999999998876653


Q ss_pred             CCCCcceeeeecccCCCCceEEcccCCCC
Q 008363          374 SRNRPMHFLCGSVTEDESAITVNTPLDNT  402 (568)
Q Consensus       374 ~~~~~~~~~~~s~~~~~~~i~~~~~~~~~  402 (568)
                      .....  ..+.+++++|..+.++.....+
T Consensus       277 ~~~~~--~~~~~~s~dG~~l~v~~~~~~i  303 (337)
T d1pbyb_         277 PLPHS--YYSVNVSTDGSTVWLGGALGDL  303 (337)
T ss_dssp             ECSSC--CCEEEECTTSCEEEEESBSSEE
T ss_pred             cCCCC--EEEEEECCCCCEEEEEeCCCcE
Confidence            33222  3456899999999887655544

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.62  E-value=1.8e-14  Score=141.42  Aligned_cols=92  Identities=13%  Similarity=0.067  Sum_probs=68.8

Q ss_pred             EEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEE
Q 008363          106 VKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTM  185 (568)
Q Consensus       106 v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v  185 (568)
                      ++|++++          .+|++++.|++|.|||+.+++.+.++..                         .|...+ .++
T Consensus         2 ~a~~~~~----------~~l~~~~~~~~v~v~D~~t~~~~~t~~~-------------------------~~~~~p-~~l   45 (346)
T d1jmxb_           2 PALKAGH----------EYMIVTNYPNNLHVVDVASDTVYKSCVM-------------------------PDKFGP-GTA   45 (346)
T ss_dssp             CCCCTTC----------EEEEEEETTTEEEEEETTTTEEEEEEEC-------------------------SSCCSS-CEE
T ss_pred             ccCCCCC----------cEEEEEcCCCEEEEEECCCCCEEEEEEc-------------------------CCCCCc-ceE
Confidence            4678888          8999999999999999999988877521                         233343 899


Q ss_pred             EEccCCCCCEE-EEEeCCCeEEEEEccCCCCCCCCceeEEeeCCC------CCeeEEEEccCC
Q 008363          186 EWSTSPPHDYL-LAGCHDGTVALWKFVASDSSIDSRPLLCFSADT------LPIRAVSWAPAE  241 (568)
Q Consensus       186 ~~s~~~~g~~l-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~------~~V~~v~~~p~~  241 (568)
                      +|+  |||++| ++++.++.|.+||+.+.      +.+..+....      ..+..++|+|+|
T Consensus        46 ~~s--pDG~~l~v~~~~~~~v~~~d~~t~------~~~~~~~~~~~~~~~~~~~~~v~~s~DG  100 (346)
T d1jmxb_          46 MMA--PDNRTAYVLNNHYGDIYGIDLDTC------KNTFHANLSSVPGEVGRSMYSFAISPDG  100 (346)
T ss_dssp             EEC--TTSSEEEEEETTTTEEEEEETTTT------EEEEEEESCCSTTEEEECSSCEEECTTS
T ss_pred             EEC--CCCCEEEEEECCCCcEEEEeCccC------eeeeeecccccccccCCceEEEEEecCC
Confidence            999  899876 55668999999999876      5555443322      235567788877

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=2.8e-13  Score=132.39  Aligned_cols=220  Identities=8%  Similarity=0.051  Sum_probs=136.6

Q ss_pred             eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEE-eCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecce
Q 008363           91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVL-LGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFR  169 (568)
Q Consensus        91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~-s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~  169 (568)
                      .+.....|.+.+ ..|+|+|+|          ++|+++ ..|+.|++|++........+..+                  
T Consensus        28 ~~~~~~~~~~~v-~~la~spDG----------~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~------------------   78 (333)
T d1ri6a_          28 TLTQVVDVPGQV-QPMVVSPDK----------RYLYVGVRPEFRVLAYRIAPDDGALTFAAE------------------   78 (333)
T ss_dssp             EEEEEEECSSCC-CCEEECTTS----------SEEEEEETTTTEEEEEEECTTTCCEEEEEE------------------
T ss_pred             EEEEEEcCCCCE-eEEEEeCCC----------CEEEEEECCCCeEEEEEEeCCCCcEEEeee------------------
Confidence            344556777744 599999999          677554 45899999999875444332111                  


Q ss_pred             ecccccCCcCccceEEEEccCCCCCEEEEEeC-CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCc
Q 008363          170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH-DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSAN  248 (568)
Q Consensus       170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~  248 (568)
                           ..+...+ ..++|+  |+|++|++++. +++|.+|+......    ........+...+.++.|+|++      +
T Consensus        79 -----~~~~~~p-~~l~~s--pDg~~l~v~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~v~~s~d~------~  140 (333)
T d1ri6a_          79 -----SALPGSL-THISTD--HQGQFVFVGSYNAGNVSVTRLEDGLP----VGVVDVVEGLDGCHSANISPDN------R  140 (333)
T ss_dssp             -----EECSSCC-SEEEEC--TTSSEEEEEETTTTEEEEEEEETTEE----EEEEEEECCCTTBCCCEECTTS------S
T ss_pred             -----cccCCCc-eEEEEc--CCCCEEeecccCCCceeeeccccccc----eecccccCCCccceEEEeeecc------e
Confidence                 1222333 789999  99999988875 77899999875511    3333445677788899999998      6


Q ss_pred             EEEEEcCC-C-EEEEECCCCCccee-----eeCCCC--------------------------------------------
Q 008363          249 VILTAGHG-G-LKFWDIRDPFRPLW-----DIHPAP--------------------------------------------  277 (568)
Q Consensus       249 ~las~s~d-~-v~lwD~~~~~~~~~-----~~~~h~--------------------------------------------  277 (568)
                      +++.++.+ . |.+|+.........     ......                                            
T Consensus       141 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  220 (333)
T d1ri6a_         141 TLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLD  220 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEE
T ss_pred             eeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeee
Confidence            76666654 4 88888765421110     000111                                            


Q ss_pred             ---------CCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC
Q 008363          278 ---------KFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT  347 (568)
Q Consensus       278 ---------~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~  347 (568)
                               .....+++++++++++... .++.+.+|++...       +..      ..+.....+...+++++|+|+|
T Consensus       221 ~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~-------~~~------~~~~~~~~~~~~p~~~a~spDG  287 (333)
T d1ri6a_         221 MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSED-------GSV------LSKEGFQPTETQPRGFNVDHSG  287 (333)
T ss_dssp             CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-------SCC------EEEEEEEECSSSCCCEEECTTS
T ss_pred             eeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCC-------CCE------EEEEEEeCCCCCeeEEEEeCCC
Confidence                     1233455666666555443 3556666666321       111      1112223344567789999999


Q ss_pred             CEEEEEe-CCCeEEEEEc--CCCeee
Q 008363          348 GMVAYCS-ADGTVHRFQL--TAKAVE  370 (568)
Q Consensus       348 ~~l~s~s-~Dg~v~iwd~--~~~~~~  370 (568)
                      ++|++++ .++.|.+|++  .++.++
T Consensus       288 k~l~va~~~~~~v~v~~id~~tG~l~  313 (333)
T d1ri6a_         288 KYLIAAGQKSHHISVYEIVGEQGLLH  313 (333)
T ss_dssp             SEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred             CEEEEEECCCCeEEEEEEECCCCcEE
Confidence            9877765 4688999955  555554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.57  E-value=9.6e-13  Score=126.35  Aligned_cols=208  Identities=14%  Similarity=0.131  Sum_probs=148.3

Q ss_pred             EEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEE-EEEeCCC
Q 008363          125 LAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYL-LAGCHDG  203 (568)
Q Consensus       125 las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l-~sgs~Dg  203 (568)
                      .++++.|++|.|||+.+++.+.++..                          . .. |..++|+  |+|++| ++++.++
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~--------------------------g-~~-p~~va~s--pdG~~l~v~~~~~~   54 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPV--------------------------G-SN-PMGAVIS--PDGTKVYVANAHSN   54 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEEC--------------------------S-SS-EEEEEEC--TTSSEEEEEEGGGT
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEEC--------------------------C-CC-ceEEEEe--CCCCEEEEEECCCC
Confidence            45677899999999999988877521                          1 22 3789998  899877 5677899


Q ss_pred             eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEE
Q 008363          204 TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYG  282 (568)
Q Consensus       204 ~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~  282 (568)
                      .|++||+.+.      ..+..+..|.. +..++|++++.     .+++++..+. +.+||..+. .....+.. .....+
T Consensus        55 ~i~v~d~~t~------~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~  120 (301)
T d1l0qa2          55 DVSIIDTATN------NVIATVPAGSS-PQGVAVSPDGK-----QVYVTNMASSTLSVIDTTSN-TVAGTVKT-GKSPLG  120 (301)
T ss_dssp             EEEEEETTTT------EEEEEEECSSS-EEEEEECTTSS-----EEEEEETTTTEEEEEETTTT-EEEEEEEC-SSSEEE
T ss_pred             EEEEEECCCC------ceeeeeecccc-ccccccccccc-----cccccccccceeeecccccc-eeeeeccc-cccceE
Confidence            9999999876      78888877654 68999999982     4555566667 999999977 66666644 456789


Q ss_pred             EEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCC-CeEE
Q 008363          283 LDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD-GTVH  360 (568)
Q Consensus       283 l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D-g~v~  360 (568)
                      ++|+|++..++.++ .++.+.+|+...        +..        +..+. +...+..+.++|++..+++++.+ +.+.
T Consensus       121 ~~~~~dg~~~~~~~~~~~~~~~~~~~~--------~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (301)
T d1l0qa2         121 LALSPDGKKLYVTNNGDKTVSVINTVT--------KAV--------INTVS-VGRSPKGIAVTPDGTKVYVANFDSMSIS  183 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTT--------TEE--------EEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             EEeecCCCeeeeeeccccceeeeeccc--------cce--------eeecc-cCCCceEEEeeccccceeeecccccccc
Confidence            99999999887665 488899999843        322        23444 44567899999999888777765 6677


Q ss_pred             EEEcCCCeeeccCCCCCcceeeeecccCCCCceEE
Q 008363          361 RFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITV  395 (568)
Q Consensus       361 iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~  395 (568)
                      +|+...............+.-  ..+..++..+.+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~v  216 (301)
T d1l0qa2         184 VIDTVTNSVIDTVKVEAAPSG--IAVNPEGTKAYV  216 (301)
T ss_dssp             EEETTTTEEEEEEECSSEEEE--EEECTTSSEEEE
T ss_pred             cccccceeeeecccccCCcce--eecccccccccc
Confidence            888776655443222222222  245566665544

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.56  E-value=1.4e-13  Score=140.62  Aligned_cols=193  Identities=9%  Similarity=-0.007  Sum_probs=136.1

Q ss_pred             EEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCC
Q 008363          124 YLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDG  203 (568)
Q Consensus       124 ~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg  203 (568)
                      ++++.+.||+|+|||+.+++.+.++                          ..|. .+ ..++|+  |||++|++++.||
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l--------------------------~~g~-~~-~~vafS--PDGk~l~~~~~d~   83 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVI--------------------------DTGY-AV-HISRMS--ASGRYLLVIGRDA   83 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEE--------------------------ECCS-SE-EEEEEC--TTSCEEEEEETTS
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEE--------------------------eCCC-Ce-eEEEEC--CCCCEEEEEeCCC
Confidence            5677889999999999999999887                          3332 34 899999  9999999999999


Q ss_pred             eEEEEEccCCCCCCCCceeEEe---eCCCCCeeEEEEccCCCCCCCCcEE-EEEcCCC-EEEEECCCCCcceeeeCCCC-
Q 008363          204 TVALWKFVASDSSIDSRPLLCF---SADTLPIRAVSWAPAESDSDSANVI-LTAGHGG-LKFWDIRDPFRPLWDIHPAP-  277 (568)
Q Consensus       204 ~I~iwd~~~~~~~~~~~~~~~~---~~h~~~V~~v~~~p~~~~~~~~~~l-as~s~d~-v~lwD~~~~~~~~~~~~~h~-  277 (568)
                      +|++||+.+...    .....+   .+|...+.+++|+|+|      +++ +++..++ +++||..+. .++..+..|. 
T Consensus        84 ~v~vwd~~t~~~----~~~~~i~~~~~~~~~~~s~~~spDG------~~l~v~~~~~~~v~i~d~~~~-~~~~~~~~~~~  152 (426)
T d1hzua2          84 RIDMIDLWAKEP----TKVAEIKIGIEARSVESSKFKGYED------RYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGM  152 (426)
T ss_dssp             EEEEEETTSSSC----EEEEEEECCSEEEEEEECCSTTCTT------TEEEEEEEESSEEEEEETTTC-CEEEEEECCEE
T ss_pred             CEEEEEccCCce----eEEEEEeCCCCCcceEEeeeecCCC------CEEEEeecCCCeEEEEcCCcc-ceeEEeeccCC
Confidence            999999987732    222233   2455667777888898      665 4555677 999999987 5554444433 


Q ss_pred             ----------CCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecC
Q 008363          278 ----------KFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL  346 (568)
Q Consensus       278 ----------~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~  346 (568)
                                .....+.+++++..++.... .+.+.+++...        +..+       ......+...+..+.|+|+
T Consensus       153 ~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~--------~~~~-------~~~~~~~~~~~~~~~~~~~  217 (426)
T d1hzua2         153 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD--------IDNL-------TVTSIGAAPFLADGGWDSS  217 (426)
T ss_dssp             CSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSS--------SSSC-------EEEEEECCSSEEEEEECTT
T ss_pred             CccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecc--------ccce-------eeEEeccCCccEeeeECCC
Confidence                      33455666666666665543 34555555522        2111       1244567788999999999


Q ss_pred             CCEEEEEe-CCCeEEEEEcCCCeeecc
Q 008363          347 TGMVAYCS-ADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       347 ~~~l~s~s-~Dg~v~iwd~~~~~~~~~  372 (568)
                      +++++++. .+..+.+|+..++.....
T Consensus       218 g~~~~~a~~~~~~~~~~~~~~~~~~~~  244 (426)
T d1hzua2         218 HRYFMTAANNSNKVAVIDSKDRRLSAL  244 (426)
T ss_dssp             SCEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred             CcEEEeeeecccceeeeecccccEEEE
Confidence            98777766 556799999988876543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.43  E-value=2.4e-11  Score=120.75  Aligned_cols=233  Identities=13%  Similarity=0.057  Sum_probs=143.1

Q ss_pred             EEEEccCCCCcccccCcccEEEEEe----------CCCcEEEEECCCCceeeEEeccCCc---cC---------CCCc--
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLL----------GNGSLEVWEVPLLRTMKAIYLSSMK---EG---------TDPR--  160 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s----------~dg~V~iwd~~~~~~~~~l~~~~~~---~~---------~~~~--  160 (568)
                      .++|+|+|          ++|++++          .++.|.|||..+++.+..+..+...   ..         ....  
T Consensus        70 ~~a~SpDG----------~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~  139 (373)
T d2madh_          70 NPVAAHSG----------SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADL  139 (373)
T ss_pred             cEEEcCCC----------CEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcE
Confidence            68999999          7888775          4678999999999888776544320   00         1111  


Q ss_pred             ---------eEEEeecceecccccCCcCccceEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC---
Q 008363          161 ---------FVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA---  227 (568)
Q Consensus       161 ---------~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~---  227 (568)
                               .+.+++...  .....+.... .++.++  ++|. .+++.+.||++.+|+....      ........   
T Consensus       140 ~v~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~s--~~g~~~~v~~~~dg~~~~~~~~~~------~~~~~~~~~~~  208 (373)
T d2madh_         140 LFFQFAAGPAVGLVVQGG--SSDDQLLSSP-TCYHIH--PGAPSTFYLLCAQGGLAKTDHAGG------AAGAGLVGAML  208 (373)
T ss_pred             EEEEEcCCCceEEeeccC--CeEEEEeccc-eeEEEe--cCCCcEEEEEcCCCeEEEEEcCCc------eeeEEEeeecc
Confidence                     111111111  0111233333 678888  6665 5578899999999998866      33333322   


Q ss_pred             ---CCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcc-eeeeCCC----------CCCeEEEEEcCCCCEE
Q 008363          228 ---DTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRP-LWDIHPA----------PKFIYGLDWLPDPGCV  292 (568)
Q Consensus       228 ---h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~-~~~~~~h----------~~~i~~l~~sp~~~~l  292 (568)
                         +......+.+.+++       .++..+.++ +.+|+....... ......+          ......++++|++..+
T Consensus       209 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  281 (373)
T d2madh_         209 TAAQNLLTQPAQANKSG-------RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI  281 (373)
T ss_pred             ccCccceeeeEEECCCc-------eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeE
Confidence               22223445566665       455555666 999998865311 1112111          2223456667766655


Q ss_pred             EE----------EeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCC--EEEEEeCCCeEE
Q 008363          293 IL----------SFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG--MVAYCSADGTVH  360 (568)
Q Consensus       293 ~s----------~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~--~l~s~s~Dg~v~  360 (568)
                      +.          ...++.|.+||+.        +++.+        ..+. +...+.+++|+|||+  ++++++.|+.|+
T Consensus       282 ~~~~~~~~~~~~~~~~~~v~~~d~~--------t~~~~--------~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~  344 (373)
T d2madh_         282 YLLTSEQSAWKLHAAAKEVTSVTGL--------VGQTS--------SQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLH  344 (373)
T ss_pred             EEecCCCceEEeecCCCeEEEEECC--------CCcEE--------EEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEE
Confidence            43          4456778899984        35443        3443 567789999999997  457889999999


Q ss_pred             EEEcCCCeeeccCC-CCCcceee
Q 008363          361 RFQLTAKAVEKDHS-RNRPMHFL  382 (568)
Q Consensus       361 iwd~~~~~~~~~~~-~~~~~~~~  382 (568)
                      +||+.+++..+... ..+.|..+
T Consensus       345 v~D~~tg~~~~~~~~~g~~P~~l  367 (373)
T d2madh_         345 IYDAGAGDQDQSTVELGSGPQVL  367 (373)
T ss_pred             EEECCCCCEEEEECCCCCCCcEE
Confidence            99999998776543 23445544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=6.9e-11  Score=114.87  Aligned_cols=197  Identities=11%  Similarity=0.113  Sum_probs=131.7

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEe-C
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC-H  201 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs-~  201 (568)
                      ..+++++.|++|+||++.....+..+..                        ..|...+ ..|+|+  |||++|++++ .
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~------------------------~~~~~~v-~~la~s--pDG~~L~v~~~~   57 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQV------------------------VDVPGQV-QPMVVS--PDKRYLYVGVRP   57 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEE------------------------EECSSCC-CCEEEC--TTSSEEEEEETT
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEE------------------------EcCCCCE-eEEEEe--CCCCEEEEEECC
Confidence            3567788999999999987443332210                        3566677 899999  8999885555 5


Q ss_pred             CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-CC-EEEEECCCCC-cceeeeCCCCC
Q 008363          202 DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-GG-LKFWDIRDPF-RPLWDIHPAPK  278 (568)
Q Consensus       202 Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~-v~lwD~~~~~-~~~~~~~~h~~  278 (568)
                      |+.|.+|++.....   ...+.....+...+..++|+|++      ++|++++. +. |.+|+..... ........+..
T Consensus        58 d~~i~~~~i~~~~~---~~~~~~~~~~~~~p~~l~~spDg------~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  128 (333)
T d1ri6a_          58 EFRVLAYRIAPDDG---ALTFAAESALPGSLTHISTDHQG------QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD  128 (333)
T ss_dssp             TTEEEEEEECTTTC---CEEEEEEEECSSCCSEEEECTTS------SEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT
T ss_pred             CCeEEEEEEeCCCC---cEEEeeecccCCCceEEEEcCCC------CEEeecccCCCceeeeccccccceecccccCCCc
Confidence            89999999986522   01111222345567889999999      78877775 45 9999887653 12233345667


Q ss_pred             CeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEe-CC
Q 008363          279 FIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCS-AD  356 (568)
Q Consensus       279 ~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s-~D  356 (568)
                      .+.++.++|+++++++++. +..|.+|+.....       ....   .........+......++|++++.+++... ..
T Consensus       129 ~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~-------~~~~---~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~  198 (333)
T d1ri6a_         129 GCHSANISPDNRTLWVPALKQDRICLFTVSDDG-------HLVA---QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN  198 (333)
T ss_dssp             TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS-------CEEE---EEEEEEECSTTCCEEEEEECTTSSEEEEEETTT
T ss_pred             cceEEEeeecceeeeccccccceeeEEEeccCC-------ccee---eeceeeeeecCCCccEEEEeccceeEEeecccc
Confidence            7889999999999988875 6679999985411       1100   000011223345668899999987776554 56


Q ss_pred             CeEEEEEcC
Q 008363          357 GTVHRFQLT  365 (568)
Q Consensus       357 g~v~iwd~~  365 (568)
                      +...+|++.
T Consensus       199 ~~~~v~~~~  207 (333)
T d1ri6a_         199 SSVDVWELK  207 (333)
T ss_dssp             TEEEEEESS
T ss_pred             CceEEEeec
Confidence            678888864

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.31  E-value=2.1e-11  Score=120.11  Aligned_cols=208  Identities=12%  Similarity=0.056  Sum_probs=132.5

Q ss_pred             EEEEccCCCCcccccCcccEEEEE----------eCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVL----------LGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~----------s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      .++|+|++          ++|++.          ..|+.|++||+.+++.+..+..+....                   
T Consensus        51 ~~a~SpDg----------~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~-------------------  101 (355)
T d2bbkh_          51 NPVVADDG----------SFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR-------------------  101 (355)
T ss_dssp             EEEECTTS----------SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC-------------------
T ss_pred             ceEEcCCC----------CEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcce-------------------
Confidence            68999999          666654          347899999999988887764332100                   


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEe--CCCeEEEEEccCCCCCCCCceeEEeeCC------------------------
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGC--HDGTVALWKFVASDSSIDSRPLLCFSAD------------------------  228 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~h------------------------  228 (568)
                      ...... +..++|+  +++.++++++  .+..+.+|+..+.      ..+..+..+                        
T Consensus       102 ~~~~~~-~~~~~~s--~dg~~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~  172 (355)
T d2bbkh_         102 FLVGTY-PWMTSLT--PDGKTLLFYQFSPAPAVGVVDLEGK------AFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAK  172 (355)
T ss_dssp             CCBSCC-GGGEEEC--TTSSEEEEEECSSSCEEEEEETTTT------EEEEEEECCSEEEEEEEETTEEEEEETTSCEEE
T ss_pred             eecCCC-CceEEEe--cCCCeeEEecCCCCceeeeeecCCC------cEeeEEecCCcceEeecCCcceEEEcCCCCEEE
Confidence            111122 2567777  7777776664  4567788887655      222222211                        


Q ss_pred             ---------------------CCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcce-eeeCCC---------
Q 008363          229 ---------------------TLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPL-WDIHPA---------  276 (568)
Q Consensus       229 ---------------------~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~-~~~~~h---------  276 (568)
                                           ...+....+.+.+      ..++.++.++ +++|++....... .....+         
T Consensus       173 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (355)
T d2bbkh_         173 VAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA------GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW  246 (355)
T ss_dssp             EECCSSSCCEEEECCCCSCTTSCBCSCCEEETTT------TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTE
T ss_pred             EEecCCCeEEEEecccccceecceeeeccccCCC------CeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeee
Confidence                                 1112233444444      6777888888 9999998763221 111111         


Q ss_pred             -CCCeEEEEEcCCCCEEEEEeCC----------CcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEec
Q 008363          277 -PKFIYGLDWLPDPGCVILSFDD----------GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSR  345 (568)
Q Consensus       277 -~~~i~~l~~sp~~~~l~s~~~d----------g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp  345 (568)
                       ......++++|++..++....+          ..|.+||+..        ++.+        ..+. +...+.+++|+|
T Consensus       247 ~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t--------~~~~--------~~~~-~~~~~~~~a~sp  309 (355)
T d2bbkh_         247 RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT--------GERL--------AKFE-MGHEIDSINVSQ  309 (355)
T ss_dssp             EECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT--------CCEE--------EEEE-EEEEECEEEECC
T ss_pred             eccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC--------CcEE--------EEec-CCCCEEEEEEcC
Confidence             1223458899999988876543          3699999843        4432        3444 334578999999


Q ss_pred             CCC--EEEEEeCCCeEEEEEcCCCeeeccC
Q 008363          346 LTG--MVAYCSADGTVHRFQLTAKAVEKDH  373 (568)
Q Consensus       346 ~~~--~l~s~s~Dg~v~iwd~~~~~~~~~~  373 (568)
                      +|+  ++++++.|+.|++||+.+++..+..
T Consensus       310 DG~~~l~v~~~~d~~i~v~D~~tg~~~~~i  339 (355)
T d2bbkh_         310 DEKPLLYALSTGDKTLYIHDAESGEELRSV  339 (355)
T ss_dssp             SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CCCeEEEEEECCCCEEEEEECCCCCEEEEE
Confidence            996  4567778999999999998876653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.14  E-value=6.1e-10  Score=108.26  Aligned_cols=154  Identities=9%  Similarity=0.132  Sum_probs=108.9

Q ss_pred             EEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee-CCCCCeeEEEEccCCCCCCCCcE-EEEEcCCC-EEEEE
Q 008363          186 EWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS-ADTLPIRAVSWAPAESDSDSANV-ILTAGHGG-LKFWD  262 (568)
Q Consensus       186 ~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~~~~-las~s~d~-v~lwD  262 (568)
                      +|+  +++++|++++.|++|.+||+.+.      +.+.++. .|...+.+++|+|++      ++ ++++..++ |.+||
T Consensus         3 a~~--~~~~~l~~~~~~~~v~v~D~~t~------~~~~t~~~~~~~~p~~l~~spDG------~~l~v~~~~~~~v~~~d   68 (346)
T d1jmxb_           3 ALK--AGHEYMIVTNYPNNLHVVDVASD------TVYKSCVMPDKFGPGTAMMAPDN------RTAYVLNNHYGDIYGID   68 (346)
T ss_dssp             CCC--TTCEEEEEEETTTEEEEEETTTT------EEEEEEECSSCCSSCEEEECTTS------SEEEEEETTTTEEEEEE
T ss_pred             cCC--CCCcEEEEEcCCCEEEEEECCCC------CEEEEEEcCCCCCcceEEECCCC------CEEEEEECCCCcEEEEe
Confidence            455  88999999999999999999977      8888776 456678999999998      55 46667778 99999


Q ss_pred             CCCCCcceeeeCCCC------CCeEEEEEcCCCCEEEEEe------------CCCcEEEEEccccccCCCCCCCCccCcc
Q 008363          263 IRDPFRPLWDIHPAP------KFIYGLDWLPDPGCVILSF------------DDGAMRIVSLLKAAYDVPATGKPFAGTK  324 (568)
Q Consensus       263 ~~~~~~~~~~~~~h~------~~i~~l~~sp~~~~l~s~~------------~dg~I~lwd~~~~~~~~~~~g~~~~~~~  324 (568)
                      +.++ ..+..+....      ..+..++|+|||++|++++            .++.+.+||...        ++..    
T Consensus        69 ~~t~-~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~~----  135 (346)
T d1jmxb_          69 LDTC-KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD--------GLEA----  135 (346)
T ss_dssp             TTTT-EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG--------GGGB----
T ss_pred             CccC-eeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccc--------ceee----
Confidence            9987 5554443211      2345789999999998775            467788898854        3221    


Q ss_pred             ccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363          325 QQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK  371 (568)
Q Consensus       325 ~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~  371 (568)
                       ..+.... ....+..+.+++++.++++   ++.+.+|++.++....
T Consensus       136 -~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  177 (346)
T d1jmxb_         136 -KPVRTFP-MPRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTV  177 (346)
T ss_dssp             -CCSEEEE-CCSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEE
T ss_pred             -eEEEeee-ccCceEEEEecCCCEEEEe---CCcceEEEccCCCEEE
Confidence             1122222 2334556677777766654   3568899987766544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.10  E-value=1.1e-09  Score=108.72  Aligned_cols=216  Identities=7%  Similarity=-0.073  Sum_probs=126.9

Q ss_pred             EEEEccCCCCcccccCcccEEEEEe----------CCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLL----------GNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s----------~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      .++|+|++          +.|++.+          .|+.|++||..+++.+..+..+...                    
T Consensus        69 ~~a~spDg----------~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~--------------------  118 (368)
T d1mdah_          69 LAVAGHSG----------SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP--------------------  118 (368)
T ss_dssp             EEEECTTS----------SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC--------------------
T ss_pred             cceECCCC----------CEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccc--------------------
Confidence            58899999          6777654          3678999999998888776332110                    


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEe-CCCeEEEEEccCCCCCCCCceeEEeeCCCCC-------eeEEEEccCCCCCCC
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGC-HDGTVALWKFVASDSSIDSRPLLCFSADTLP-------IRAVSWAPAESDSDS  246 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~-------V~~v~~~p~~~~~~~  246 (568)
                      ......-+..++|+  |||++|+++. .++.|.+||+.+.      +.+..+..+...       ...+++++++     
T Consensus       119 ~~~~g~~p~~~a~S--pDGk~l~va~~~~~~v~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg-----  185 (368)
T d1mdah_         119 RFSVGPRVHIIGNC--ASSACLLFFLFGSSAAAGLSVPGA------SDDQLTKSASCFHIHPGAAATHYLGSCPA-----  185 (368)
T ss_dssp             SCCBSCCTTSEEEC--TTSSCEEEEECSSSCEEEEEETTT------EEEEEEECSSCCCCEEEETTEEECCCCTT-----
T ss_pred             eecccCCccceEEC--CCCCEEEEEeCCCCeEEEEECCCC------cEeEEeeccCcceEccCCCceEEEEcCCC-----
Confidence            00111113678998  8999888776 5799999999876      555555443322       1223334443     


Q ss_pred             CcEEEEE------------------------------------cCCC-EEEEECCCCCcce-eeeCCC----------CC
Q 008363          247 ANVILTA------------------------------------GHGG-LKFWDIRDPFRPL-WDIHPA----------PK  278 (568)
Q Consensus       247 ~~~las~------------------------------------s~d~-v~lwD~~~~~~~~-~~~~~h----------~~  278 (568)
                       .+++..                                    ..++ +.++++......+ .....+          ..
T Consensus       186 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (368)
T d1mdah_         186 -SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSA  264 (368)
T ss_dssp             -SCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEEC
T ss_pred             -CEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCC
Confidence             111111                                    1112 3344433321111 000000          11


Q ss_pred             CeEEEEEcCCCCEEEEEeCC---------CcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCC-
Q 008363          279 FIYGLDWLPDPGCVILSFDD---------GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG-  348 (568)
Q Consensus       279 ~i~~l~~sp~~~~l~s~~~d---------g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~-  348 (568)
                      ....++++|++..++....+         ..|.+||..        +++.+        ..+. +...+.+++|+|+|+ 
T Consensus       265 g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~--------t~~~~--------~~~~-~~~~~~~~a~spDG~~  327 (368)
T d1mdah_         265 GFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTAS--------VGQTS--------GPIS-NGHDSDAIIAAQDGAS  327 (368)
T ss_dssp             SSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESS--------SCCEE--------ECCE-EEEEECEEEECCSSSC
T ss_pred             CceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECC--------CCcEe--------EEec-CCCceeEEEECCCCCE
Confidence            12347788888877665322         248888884        35433        3333 335678899999986 


Q ss_pred             -EEEEEeCCCeEEEEEcCCCeeeccCCCCCccee
Q 008363          349 -MVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHF  381 (568)
Q Consensus       349 -~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~  381 (568)
                       +++++..|+.|++||..+++..........|.-
T Consensus       328 ~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~  361 (368)
T d1mdah_         328 DNYANSAGTEVLDIYDAASDQDQSSVELDKGPES  361 (368)
T ss_dssp             EEEEEETTTTEEEEEESSSCEEEEECCCCSCCCE
T ss_pred             EEEEEeCCCCeEEEEECCCCCEEEEEECCCCCCE
Confidence             346677899999999999887766443333433

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.08  E-value=9.6e-09  Score=101.35  Aligned_cols=197  Identities=10%  Similarity=-0.021  Sum_probs=130.0

Q ss_pred             ccCCceeeEEEEccCCCCcccccCcccEEEEE-----eCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363           97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVL-----LGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS  171 (568)
Q Consensus        97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~-----s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~  171 (568)
                      .|.+ .+..++++|++          +.+++.     +..+.|.+||..+++.+..+                       
T Consensus        18 ~~~~-p~~~~a~spdg----------~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~-----------------------   63 (373)
T d2madh_          18 AADG-PTNDEAPGADG----------RRSYINLPAHHSAIIQQWVLDAGSGSILGHV-----------------------   63 (373)
T ss_pred             cCCC-CccccccCCCC----------CEEEEEcccccCCCceEEEEECCCCCEEEEE-----------------------
Confidence            4556 44599999999          566554     23467999999999888776                       


Q ss_pred             ccccCCcCccceEEEEccCCCCCEEEEEe----------CCCeEEEEEccCCCCCCCCceeEEeeCCCCCe-------eE
Q 008363          172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGC----------HDGTVALWKFVASDSSIDSRPLLCFSADTLPI-------RA  234 (568)
Q Consensus       172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V-------~~  234 (568)
                         ..+..   ..++|+  |||++|++++          .++.|.+||+.+.      +++..+..+....       ..
T Consensus        64 ---~~~~~---~~~a~S--pDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~------~~~~~~~~~~~~~~~~~~~~~~  129 (373)
T d2madh_          64 ---NGGFL---PNPVAA--HSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF------LPIADIELPDAPRFDVGPYSWM  129 (373)
T ss_pred             ---eCCCC---ccEEEc--CCCCEEEEEeecCCcccccccceEEEEEECCCC------cEEEEEecCCcceeEeccCCCc
Confidence               22221   357888  8999998875          4678999999977      6666665555443       45


Q ss_pred             EEEccCCCCCCCCcEEEEE--cCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEEccccc
Q 008363          235 VSWAPAESDSDSANVILTA--GHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVI-LSFDDGAMRIVSLLKAA  310 (568)
Q Consensus       235 v~~~p~~~~~~~~~~las~--s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~-s~~~dg~I~lwd~~~~~  310 (568)
                      +.|++++      ..++..  ..+. +.+|+.... .....    .....++.|+|+++.++ +.+.|+.+.+||...  
T Consensus       130 ~~~s~dg------~~~~v~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~--  196 (373)
T d2madh_         130 NANTPNN------ADLLFFQFAAGPAVGLVVQGGS-SDDQL----LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAG--  196 (373)
T ss_pred             EEEEeCC------CcEEEEEEcCCCceEEeeccCC-eEEEE----eccceeEEEecCCCcEEEEEcCCCeEEEEEcCC--
Confidence            6788887      444333  3345 888887765 33322    33457889999998765 567799999999853  


Q ss_pred             cCCCCCCCCccCccccceEEEe------cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363          311 YDVPATGKPFAGTKQQGLHLVN------CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV  369 (568)
Q Consensus       311 ~~~~~~g~~~~~~~~~~l~~~~------~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~  369 (568)
                            +...        ....      ++......+.+++++ .++..+.++.+.+|+......
T Consensus       197 ------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~  246 (373)
T d2madh_         197 ------GAAG--------AGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAGA  246 (373)
T ss_pred             ------ceee--------EEEeeeccccCccceeeeEEECCCc-eEEEecCCceEEEEEcCCCeE
Confidence                  2221        1111      111223345555544 455667899999999876543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.02  E-value=9.8e-10  Score=112.91  Aligned_cols=153  Identities=11%  Similarity=0.094  Sum_probs=113.1

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT  184 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~  184 (568)
                      .+.|.+++          .++.  ..|+.|.+||+.+++....+..+                     .+..|...| .+
T Consensus        21 ~~~W~~d~----------~~~~--~~~~~~~~~~~~t~~~~~~~~~~---------------------~~~~~~~~i-~~   66 (470)
T d2bgra1          21 SLRWISDH----------EYLY--KQENNILVFNAEYGNSSVFLENS---------------------TFDEFGHSI-ND   66 (470)
T ss_dssp             CCEECSSS----------EEEE--ESSSCEEEEETTTCCEEEEECTT---------------------TTTTSSSCC-CE
T ss_pred             CCEeCCCC----------EEEE--EcCCcEEEEECCCCCEEEEEchh---------------------hhhhccCcc-ce
Confidence            68899988          5665  35788999999998776544222                     125667788 99


Q ss_pred             EEEccCCCCCEEEEEeC---------CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363          185 MEWSTSPPHDYLLAGCH---------DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH  255 (568)
Q Consensus       185 v~~s~~~~g~~l~sgs~---------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~  255 (568)
                      +.|+  |||++|+.++.         ++.+.|||+.++      . +..+..|...+..+.|+|+|      +.||....
T Consensus        67 ~~~S--pDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~------~-~~~l~~~~~~~~~~~~SPDG------~~ia~~~~  131 (470)
T d2bgra1          67 YSIS--PDGQFILLEYNYVKQWRHSYTASYDIYDLNKR------Q-LITEERIPNNTQWVTWSPVG------HKLAYVWN  131 (470)
T ss_dssp             EEEC--TTSSEEEEEEEEEECSSSCEEEEEEEEETTTT------E-ECCSSCCCTTEEEEEECSST------TCEEEEET
T ss_pred             eEEC--CCCCEEEEEECCcceeeeccCceEEEEECCCC------c-ccccccCCccccccccccCc------ceeeEeec
Confidence            9999  99999998853         577899999876      3 34567888999999999999      88988766


Q ss_pred             CCEEEEECCCCCcceeeeC-C-----------------CCCCeEEEEEcCCCCEEEEEeCC-CcEEEEEcc
Q 008363          256 GGLKFWDIRDPFRPLWDIH-P-----------------APKFIYGLDWLPDPGCVILSFDD-GAMRIVSLL  307 (568)
Q Consensus       256 d~v~lwD~~~~~~~~~~~~-~-----------------h~~~i~~l~~sp~~~~l~s~~~d-g~I~lwd~~  307 (568)
                      ..+++|++.++. ...... +                 ..+....+.|||||++|+....| ..|..|++.
T Consensus       132 ~~l~~~~~~~g~-~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~  201 (470)
T d2bgra1         132 NDIYVKIEPNLP-SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYS  201 (470)
T ss_dssp             TEEEEESSTTSC-CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEE
T ss_pred             ccceEEECCCCc-eeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEE
Confidence            669999998773 332221 1                 12234568899999999998664 447766663

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.99  E-value=7.9e-09  Score=101.03  Aligned_cols=188  Identities=12%  Similarity=-0.001  Sum_probs=124.2

Q ss_pred             EEccCCCCcccccCcccEEEEEe-----CCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          107 KWKPYNAVDCKCKQRLGYLAVLL-----GNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       107 ~~sp~~~~~~~~~~~~~~las~s-----~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      +.+|++          ..+++..     .+..|.+||..+++.+.++..                            +..
T Consensus         8 a~spdg----------~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~----------------------------g~~   49 (355)
T d2bbkh_           8 APAPDA----------RRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG----------------------------GFL   49 (355)
T ss_dssp             CCCCCT----------TEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE----------------------------CSS
T ss_pred             eeCCCC----------CEEEEEecccCCCcCeEEEEECCCCcEEEEEEC----------------------------CCC
Confidence            557888          5665543     456799999999988876521                            122


Q ss_pred             ceEEEEccCCCCCEEEEE----------eCCCeEEEEEccCCCCCCCCceeEEeeCCC-------CCeeEEEEccCCCCC
Q 008363          182 PLTMEWSTSPPHDYLLAG----------CHDGTVALWKFVASDSSIDSRPLLCFSADT-------LPIRAVSWAPAESDS  244 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sg----------s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-------~~V~~v~~~p~~~~~  244 (568)
                       ..++|+  |||++|+++          +.|+.|++||+.+.      +++..+..+.       .....++|++++   
T Consensus        50 -~~~a~S--pDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg---  117 (355)
T d2bbkh_          50 -PNPVVA--DDGSFIAHASTVFSRIARGERTDYVEVFDPVTL------LPTADIELPDAPRFLVGTYPWMTSLTPDG---  117 (355)
T ss_dssp             -CEEEEC--TTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC------CEEEEEEETTCCCCCBSCCGGGEEECTTS---
T ss_pred             -CceEEc--CCCCEEEEEeCCCccccccCCCCEEEEEECCCC------CEEEEEecCCcceeecCCCCceEEEecCC---
Confidence             468999  899988764          34789999999977      5655554332       234568999999   


Q ss_pred             CCCcEEEEEc--CCC-EEEEECCCCCcceeeeCCCCC-------CeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCC
Q 008363          245 DSANVILTAG--HGG-LKFWDIRDPFRPLWDIHPAPK-------FIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDV  313 (568)
Q Consensus       245 ~~~~~las~s--~d~-v~lwD~~~~~~~~~~~~~h~~-------~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~  313 (568)
                         .+++.++  .+. +.+||..+. ..+..+..+..       ....+.+++++..++.... ++.+.+++.....   
T Consensus       118 ---~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~---  190 (355)
T d2bbkh_         118 ---KTLLFYQFSPAPAVGVVDLEGK-AFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH---  190 (355)
T ss_dssp             ---SEEEEEECSSSCEEEEEETTTT-EEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS---
T ss_pred             ---CeeEEecCCCCceeeeeecCCC-cEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc---
Confidence               6666554  345 999999877 55555543321       1234566666666655432 4455555542211   


Q ss_pred             CCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363          314 PATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV  369 (568)
Q Consensus       314 ~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~  369 (568)
                                        ..+...+....+.+++..++.++.++.+++|++..+..
T Consensus       191 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  228 (355)
T d2bbkh_         191 ------------------PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA  228 (355)
T ss_dssp             ------------------CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC
T ss_pred             ------------------ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE
Confidence                              12333445567888888999999999999999976643

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.79  E-value=2.2e-08  Score=102.53  Aligned_cols=155  Identities=14%  Similarity=0.147  Sum_probs=107.4

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe-----eCCCCCeeEEEEccCCCCCCCCcEEEEEcC--
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF-----SADTLPIRAVSWAPAESDSDSANVILTAGH--  255 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~-----~~h~~~V~~v~~~p~~~~~~~~~~las~s~--  255 (568)
                      ..+.|.  +++.++..  .|+.|.+||+.++      +....+     ..|...|.++.|+|++      ++|+.++.  
T Consensus        20 ~~~~W~--~d~~~~~~--~~~~~~~~~~~t~------~~~~~~~~~~~~~~~~~i~~~~~SpDg------~~i~~~~~~~   83 (470)
T d2bgra1          20 YSLRWI--SDHEYLYK--QENNILVFNAEYG------NSSVFLENSTFDEFGHSINDYSISPDG------QFILLEYNYV   83 (470)
T ss_dssp             CCCEEC--SSSEEEEE--SSSCEEEEETTTC------CEEEEECTTTTTTSSSCCCEEEECTTS------SEEEEEEEEE
T ss_pred             cCCEeC--CCCEEEEE--cCCcEEEEECCCC------CEEEEEchhhhhhccCccceeEECCCC------CEEEEEECCc
Confidence            678899  77766653  5789999999987      443333     3455789999999999      88887753  


Q ss_pred             -------CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccc-c
Q 008363          256 -------GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQ-Q  326 (568)
Q Consensus       256 -------d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~-~  326 (568)
                             ++ +.+||+.++  .+..+..|...+..+.|||||+.|+.. .++.+++|+...        |+....+.. .
T Consensus        84 ~~~r~s~~~~~~l~d~~~~--~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~--------g~~~~~t~~~~  152 (470)
T d2bgra1          84 KQWRHSYTASYDIYDLNKR--QLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPN--------LPSYRITWTGK  152 (470)
T ss_dssp             ECSSSCEEEEEEEEETTTT--EECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTT--------SCCEECCSCCB
T ss_pred             ceeeeccCceEEEEECCCC--cccccccCCccccccccccCcceeeEe-ecccceEEECCC--------CceeeeeeccC
Confidence                   35 889999976  355677888999999999999999986 467899999843        332210000 0


Q ss_pred             ceEEEec---------CCCCEEEEEEecCCCEEEEEeCCCe-EEEEEc
Q 008363          327 GLHLVNC---------SSFAIWSVQVSRLTGMVAYCSADGT-VHRFQL  364 (568)
Q Consensus       327 ~l~~~~~---------h~~~V~~l~~sp~~~~l~s~s~Dg~-v~iwd~  364 (568)
                      .-..+.+         ..+....+.|||+|++|++...|.+ +..|.+
T Consensus       153 ~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             CCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence            0001111         1233456789999999999887644 555544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.78  E-value=4.6e-08  Score=97.70  Aligned_cols=227  Identities=10%  Similarity=-0.003  Sum_probs=129.5

Q ss_pred             EEEEEeCCCcEEEEECCCCceeeEEeccCC----ccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEE
Q 008363          124 YLAVLLGNGSLEVWEVPLLRTMKAIYLSSM----KEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAG  199 (568)
Q Consensus       124 ~las~s~dg~V~iwd~~~~~~~~~l~~~~~----~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sg  199 (568)
                      .+++++.+|.|+||++.+++.++++.--+.    ..+..+...++............|...+ ......  |||++|++.
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~-s~t~gt--pDGr~lfV~   89 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHI-SMTDGR--YDGKYLFIN   89 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEE-EEETTE--EEEEEEEEE
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCc-ceeccc--CCCCEEEEE
Confidence            577888899999999999998888733211    1111111100000000000012233333 444444  789888555


Q ss_pred             -eCCCeEEEEEccCCCCCCCCceeEEee-CCCCCeeEEEEccCCCCCCCCcEEEEEcCCCE------------------E
Q 008363          200 -CHDGTVALWKFVASDSSIDSRPLLCFS-ADTLPIRAVSWAPAESDSDSANVILTAGHGGL------------------K  259 (568)
Q Consensus       200 -s~Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v------------------~  259 (568)
                       ..+.+|.++|+.+.      ++...+. .+...+..++|+|++    ...+++..+.+.+                  .
T Consensus        90 d~~~~rVavIDl~t~------k~~~ii~iP~g~gphgi~~spdg----~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~  159 (441)
T d1qnia2          90 DKANTRVARIRLDIM------KTDKITHIPNVQAIHGLRLQKVP----KTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFT  159 (441)
T ss_dssp             ETTTTEEEEEETTTT------EEEEEEECTTCCCEEEEEECCSS----BCCEEEEEECSCEESSCSSSCCCGGGEEEEEE
T ss_pred             cCCCCEEEEEECCCC------cEeeEEecCCCCCccceEEeccC----CEEEEEeccCCcccccCcccccccccccceEE
Confidence             57889999999976      6655543 467789999999998    1225555555444                  4


Q ss_pred             EEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCC---------------cEEEEEccccc-------c-CCCCC
Q 008363          260 FWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDG---------------AMRIVSLLKAA-------Y-DVPAT  316 (568)
Q Consensus       260 lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg---------------~I~lwd~~~~~-------~-~~~~~  316 (568)
                      .+|..+. .....+.. .+....+.|+|+|+++++++.+.               .|.+.+.....       + .....
T Consensus       160 ~iD~~t~-~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~  237 (441)
T d1qnia2         160 AIDAETM-DVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDS  237 (441)
T ss_dssp             EEETTTC-SEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTC
T ss_pred             eecCccc-eeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCC
Confidence            4777765 33333321 23467899999999999887643               12222211000       0 00000


Q ss_pred             CCC-cc-CccccceEEEecCCCCEEEEEEecCCCEEE-EEeCCCeEEEEEcCC
Q 008363          317 GKP-FA-GTKQQGLHLVNCSSFAIWSVQVSRLTGMVA-YCSADGTVHRFQLTA  366 (568)
Q Consensus       317 g~~-~~-~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~-s~s~Dg~v~iwd~~~  366 (568)
                      +.. +. ......+..+..... ...+.++|+|++++ ++..|++|.+||+..
T Consensus       238 ~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         238 KVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             CCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             CcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            000 00 011122345555444 47899999998764 567899999999965

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=9.2e-06  Score=75.38  Aligned_cols=202  Identities=15%  Similarity=0.118  Sum_probs=120.4

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCC---cEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNG---SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGT  178 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg---~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~  178 (568)
                      .+...+|||+|          +.||......   .+.+.+...+.....                           ..+.
T Consensus        40 ~~~sP~wSPDG----------k~IAf~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~   82 (269)
T d2hqsa1          40 PLMSPAWSPDG----------SKLAYVTFESGRSALVIQTLANGAVRQV---------------------------ASFP   82 (269)
T ss_dssp             CEEEEEECTTS----------SEEEEEECTTSSCEEEEEETTTCCEEEE---------------------------ECCS
T ss_pred             ceeeeEECCCC----------CEEEEEEeeccCcceeeeecccCceeEE---------------------------eeee
Confidence            34489999999          7888765443   355556555433222                           3344


Q ss_pred             CccceEEEEccCCCCCEEEEEeC-CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC
Q 008363          179 QSIPLTMEWSTSPPHDYLLAGCH-DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG  257 (568)
Q Consensus       179 ~~V~~~v~~s~~~~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~  257 (568)
                      ... ....|+  |+|..|+.... ++...++......     ........+........+++.+     ...+++...++
T Consensus        83 ~~~-~~~~~s--pdg~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g  149 (269)
T d2hqsa1          83 RHN-GAPAFS--PDGSKLAFALSKTGSLNLYVMDLAS-----GQIRQVTDGRSNNTEPTWFPDS-----QNLAFTSDQAG  149 (269)
T ss_dssp             SCE-EEEEEC--TTSSEEEEEECTTSSCEEEEEETTT-----CCEEECCCCSSCEEEEEECTTS-----SEEEEEECTTS
T ss_pred             ccc-ccceec--CCCCeeeEeeecCCccceeeccccc-----ccceeeeecccccccccccccc-----ccceecccccC
Confidence            454 788899  88988876654 3444444433221     1222222344445556677776     13444444444


Q ss_pred             ---EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccceEEEec
Q 008363          258 ---LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC  333 (568)
Q Consensus       258 ---v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~  333 (568)
                         |.+.++...  ....+..+........|+|+++.++..+. .+...+|.....      .+.          ..+..
T Consensus       150 ~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~------~~~----------~~~~~  211 (269)
T d2hqsa1         150 RPQVYKVNINGG--APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA------TGG----------VQVLS  211 (269)
T ss_dssp             SCEEEEEETTSS--CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT------TCC----------EEECC
T ss_pred             CceEeeeecccc--cceeeecccccccccccccccceeEEEeecCCceeeeEeecc------ccc----------ceEee
Confidence               566666554  33334445666788899999999988755 445555544221      111          23334


Q ss_pred             CCCCEEEEEEecCCCEEEEEeC---CCeEEEEEcCCCeeec
Q 008363          334 SSFAIWSVQVSRLTGMVAYCSA---DGTVHRFQLTAKAVEK  371 (568)
Q Consensus       334 h~~~V~~l~~sp~~~~l~s~s~---Dg~v~iwd~~~~~~~~  371 (568)
                      +........|+|||+.|+..+.   ...|+++++..+...+
T Consensus       212 ~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~  252 (269)
T d2hqsa1         212 STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR  252 (269)
T ss_dssp             CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE
T ss_pred             cCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence            5566778899999998876654   3468899997765544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.72  E-value=1.5e-06  Score=86.44  Aligned_cols=239  Identities=10%  Similarity=-0.025  Sum_probs=140.2

Q ss_pred             EEEEccCCCCcccccCcccEE-EEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccce
Q 008363          105 DVKWKPYNAVDCKCKQRLGYL-AVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPL  183 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~l-as~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~  183 (568)
                      ...+.|+|          ++| ++...+.+|.++|+.++++...+.-                         .+.... .
T Consensus        76 ~t~gtpDG----------r~lfV~d~~~~rVavIDl~t~k~~~ii~i-------------------------P~g~gp-h  119 (441)
T d1qnia2          76 MTDGRYDG----------KYLFINDKANTRVARIRLDIMKTDKITHI-------------------------PNVQAI-H  119 (441)
T ss_dssp             EETTEEEE----------EEEEEEETTTTEEEEEETTTTEEEEEEEC-------------------------TTCCCE-E
T ss_pred             eecccCCC----------CEEEEEcCCCCEEEEEECCCCcEeeEEec-------------------------CCCCCc-c
Confidence            55668899          666 4555788999999999888766521                         222333 7


Q ss_pred             EEEEccCCCCC--EEEEEeCCC-----------------eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCC
Q 008363          184 TMEWSTSPPHD--YLLAGCHDG-----------------TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDS  244 (568)
Q Consensus       184 ~v~~s~~~~g~--~l~sgs~Dg-----------------~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~  244 (568)
                      .++|+  |+|+  +++.++.+.                 .+..+|..+.      .....+... +....++|+|+|   
T Consensus       120 gi~~s--pdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~------~v~~qI~v~-~~p~~v~~spdG---  187 (441)
T d1qnia2         120 GLRLQ--KVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETM------DVAWQVIVD-GNLDNTDADYTG---  187 (441)
T ss_dssp             EEEEC--CSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTC------SEEEEEEES-SCCCCEEECSSS---
T ss_pred             ceEEe--ccCCEEEEEeccCCcccccCcccccccccccceEEeecCccc------eeeEEEecC-CCccceEECCCC---
Confidence            88888  6666  555555442                 2344666544      444444332 347889999999   


Q ss_pred             CCCcEEEEEcCC-----------------------------------------C-EEEEECCCCCcceeeeCCCCCCeEE
Q 008363          245 DSANVILTAGHG-----------------------------------------G-LKFWDIRDPFRPLWDIHPAPKFIYG  282 (568)
Q Consensus       245 ~~~~~las~s~d-----------------------------------------~-v~lwD~~~~~~~~~~~~~h~~~i~~  282 (568)
                         .++++++.+                                         + +.+++.... ..+..+.... ....
T Consensus       188 ---k~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~-~v~~~IPvgk-sPhG  262 (441)
T d1qnia2         188 ---KYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGES-EFTRYIPVPK-NPHG  262 (441)
T ss_dssp             ---SEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSC-SSEEEECCBS-SCCC
T ss_pred             ---CEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCC-ceEEEEeCCC-CccC
Confidence               666655432                                         2 333333322 3444444332 2467


Q ss_pred             EEEcCCCCEEEEE-eCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEE
Q 008363          283 LDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHR  361 (568)
Q Consensus       283 l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~i  361 (568)
                      +.++|||++++++ ..+++|.+||+.++..-........     .++.-.....-.....+|.++|..+.+...|..|..
T Consensus       263 v~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~-----~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~k  337 (441)
T d1qnia2         263 LNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELR-----DTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCK  337 (441)
T ss_dssp             EEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGG-----GGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred             ceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcc-----eEEEeecccccCcccceecCCceEEEcccccceEEE
Confidence            8999999998776 4599999999976542100000000     111111111123455689999988899999999999


Q ss_pred             EEcCCCe----------e-eccCCCCCcceee---eecccCCCCceEEcccCCC
Q 008363          362 FQLTAKA----------V-EKDHSRNRPMHFL---CGSVTEDESAITVNTPLDN  401 (568)
Q Consensus       362 wd~~~~~----------~-~~~~~~~~~~~~~---~~s~~~~~~~i~~~~~~~~  401 (568)
                      |++....          + .+........|..   ..++++||..|..+..++.
T Consensus       338 w~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~  391 (441)
T d1qnia2         338 WNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSK  391 (441)
T ss_dssp             EEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCG
T ss_pred             eccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCcccc
Confidence            9984221          1 1110111122322   2267889999988754433

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.71  E-value=6.5e-06  Score=78.43  Aligned_cols=230  Identities=11%  Similarity=0.071  Sum_probs=144.0

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      .+..+++.|+|          +++++...+++|..|+... ... .+                          ......+
T Consensus        29 ~~e~iAv~pdG----------~l~vt~~~~~~I~~i~p~g-~~~-~~--------------------------~~~~~~~   70 (302)
T d2p4oa1          29 FLENLASAPDG----------TIFVTNHEVGEIVSITPDG-NQQ-IH--------------------------ATVEGKV   70 (302)
T ss_dssp             CEEEEEECTTS----------CEEEEETTTTEEEEECTTC-CEE-EE--------------------------EECSSEE
T ss_pred             CcCCEEECCCC----------CEEEEeCCCCEEEEEeCCC-CEE-EE--------------------------EcCCCCc
Confidence            56689999999          7999999999988888554 221 21                          1222344


Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEE-eeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EE
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLC-FSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LK  259 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~-~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~  259 (568)
                       .+++|.  ++|+++++...++.+.+|+......    ..... ..........+++.+++      +++++.+.++ +.
T Consensus        71 -~gla~~--~dG~l~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~n~i~~~~~g------~~~v~~~~~~~i~  137 (302)
T d2p4oa1          71 -SGLAFT--SNGDLVATGWNADSIPVVSLVKSDG----TVETLLTLPDAIFLNGITPLSDT------QYLTADSYRGAIW  137 (302)
T ss_dssp             -EEEEEC--TTSCEEEEEECTTSCEEEEEECTTS----CEEEEEECTTCSCEEEEEESSSS------EEEEEETTTTEEE
T ss_pred             -ceEEEc--CCCCeEEEecCCceEEEEEeccccc----ceeeccccCCccccceeEEccCC------CEEeeccccccce
Confidence             889988  8999999999999999998765421    22221 12345668999999998      8888888777 88


Q ss_pred             EEECCCCCcceeeeC---------CCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363          260 FWDIRDPFRPLWDIH---------PAPKFIYGLDWLPDPGCVIL-SFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH  329 (568)
Q Consensus       260 lwD~~~~~~~~~~~~---------~h~~~i~~l~~sp~~~~l~s-~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~  329 (568)
                      .+|.......+....         ........+.++  +..++. .+..+.|+.+++...       +..      ....
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~-------~~~------~~~~  202 (302)
T d2p4oa1         138 LIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDST-------DKP------GEPE  202 (302)
T ss_dssp             EEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTT-------SCB------CCCE
T ss_pred             eeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecCCCCeEEecccccc-------ccc------cccc
Confidence            888876532221111         112335667665  344444 466888888887431       111      1111


Q ss_pred             EEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecc---cCCCCceEEccc
Q 008363          330 LVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSV---TEDESAITVNTP  398 (568)
Q Consensus       330 ~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~---~~~~~~i~~~~~  398 (568)
                      .+. .......++|.++|.++++...++.|..++.................-.+.++   ..|+..|.+.+.
T Consensus       203 ~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         203 IFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             EEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             ccc-CCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence            222 22345679999999988888889999999876543221111111211222344   556677766543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.60  E-value=1.4e-05  Score=75.15  Aligned_cols=216  Identities=11%  Similarity=0.087  Sum_probs=134.5

Q ss_pred             eEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCcc------------CCCCc----------e
Q 008363          104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKE------------GTDPR----------F  161 (568)
Q Consensus       104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~------------~~~~~----------~  161 (568)
                      +.|++.|++          .++++-..++.|++||.. +..+..+.......            .....          .
T Consensus        26 ~gvavd~dg----------~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~   94 (279)
T d1q7fa_          26 SGVAVNAQN----------DIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ   94 (279)
T ss_dssp             EEEEECTTC----------CEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred             cEEEEcCCC----------CEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccc
Confidence            488999988          677777788899999865 45555542211100            00011          1


Q ss_pred             EEEeecce-ecccc-cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe--eCCCCCeeEEEE
Q 008363          162 VKLEPVFR-CSMLK-CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF--SADTLPIRAVSW  237 (568)
Q Consensus       162 v~~~~~~~-~~~~~-~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~--~~h~~~V~~v~~  237 (568)
                      +....... ..... ...... |..++..  ++|.++++....+.+.+++...       ..+..+  ..+......+++
T Consensus        95 i~~~~~~g~~~~~~~~~~~~~-p~~~avd--~~G~i~v~~~~~~~~~~~~~~g-------~~~~~~g~~~~~~~~~~i~~  164 (279)
T d1q7fa_          95 IQIYNQYGQFVRKFGATILQH-PRGVTVD--NKGRIIVVECKVMRVIIFDQNG-------NVLHKFGCSKHLEFPNGVVV  164 (279)
T ss_dssp             EEEECTTSCEEEEECTTTCSC-EEEEEEC--TTSCEEEEETTTTEEEEECTTS-------CEEEEEECTTTCSSEEEEEE
T ss_pred             cccccccccceeecCCCcccc-cceeccc--cCCcEEEEeeccceeeEeccCC-------ceeecccccccccccceeee
Confidence            11111000 00000 111222 2566655  6777777777777777777542       445554  345567889999


Q ss_pred             ccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeC--CCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCC
Q 008363          238 APAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIH--PAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDV  313 (568)
Q Consensus       238 ~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~--~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~  313 (568)
                      .+++      +++++....+ |.+||...  ..+..+.  ++......|++.|+|+.+++-.. ++.|.+|+.       
T Consensus       165 d~~g------~i~v~d~~~~~V~~~d~~G--~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-------  229 (279)
T d1q7fa_         165 NDKQ------EIFISDNRAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-------  229 (279)
T ss_dssp             CSSS------EEEEEEGGGTEEEEEETTC--CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-------
T ss_pred             ccce------eEEeeeccccceeeeecCC--ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-------
Confidence            9998      7888887777 99999764  4444442  34455789999999997766544 557999985       


Q ss_pred             CCCCCCccCccccceEEEec--CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          314 PATGKPFAGTKQQGLHLVNC--SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       314 ~~~g~~~~~~~~~~l~~~~~--h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                        .|+.+        .++..  .....+.|++.++|.+++ ++.+..|++|....
T Consensus       230 --~G~~~--------~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         230 --DGQLI--------SALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQ  273 (279)
T ss_dssp             --TSCEE--------EEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSC
T ss_pred             --CCCEE--------EEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeee
Confidence              46543        34432  223578999999987555 56789999999854

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.40  E-value=3.3e-05  Score=75.57  Aligned_cols=165  Identities=14%  Similarity=0.028  Sum_probs=99.3

Q ss_pred             eEEEEccCCCCCEEEEEeC-CCeEEEEEccCCCCCCCCceeEEe--eCCCCCeeEEEEccCCCCCCCCcEEEEEc-CCC-
Q 008363          183 LTMEWSTSPPHDYLLAGCH-DGTVALWKFVASDSSIDSRPLLCF--SADTLPIRAVSWAPAESDSDSANVILTAG-HGG-  257 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~--~~h~~~V~~v~~~p~~~~~~~~~~las~s-~d~-  257 (568)
                      .++.|+  |+|++|++++. ...|.+|++.....   .......  .......+.++|+|++      +++.... .+. 
T Consensus       148 h~v~~s--PdG~~l~v~d~g~d~v~~~~~~~~g~---~~~~~~~~~~~~g~gPr~i~f~pdg------~~~yv~~e~~~~  216 (365)
T d1jofa_         148 HGMVFD--PTETYLYSADLTANKLWTHRKLASGE---VELVGSVDAPDPGDHPRWVAMHPTG------NYLYALMEAGNR  216 (365)
T ss_dssp             EEEEEC--TTSSEEEEEETTTTEEEEEEECTTSC---EEEEEEEECSSTTCCEEEEEECTTS------SEEEEEETTTTE
T ss_pred             eEEEEC--CCCCEEEEeeCCCCEEEEEEccCCCc---eeeccceeecCCCCceEEEEECCCC------ceEEEeccCCCE
Confidence            689988  89998887764 45788888664311   1122222  1234568999999999      5665544 456 


Q ss_pred             EEEEECCCCCcc-eeeeC-----------------CCCCCeEEEEEcCCCCEEEEEeC-C-----CcEEEEEccccccCC
Q 008363          258 LKFWDIRDPFRP-LWDIH-----------------PAPKFIYGLDWLPDPGCVILSFD-D-----GAMRIVSLLKAAYDV  313 (568)
Q Consensus       258 v~lwD~~~~~~~-~~~~~-----------------~h~~~i~~l~~sp~~~~l~s~~~-d-----g~I~lwd~~~~~~~~  313 (568)
                      |.+||+...... +....                 .+......+.++|+|++|+++.. +     +.|..|++..     
T Consensus       217 V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~-----  291 (365)
T d1jofa_         217 ICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD-----  291 (365)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT-----
T ss_pred             EEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecC-----
Confidence            999998765311 11110                 11123467899999999998743 2     2377777643     


Q ss_pred             CCCCCCccCccccceEEEecCCCCEEEEEEec-CCCEEEEE-eCCCeEEEEEcCCCe
Q 008363          314 PATGKPFAGTKQQGLHLVNCSSFAIWSVQVSR-LTGMVAYC-SADGTVHRFQLTAKA  368 (568)
Q Consensus       314 ~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp-~~~~l~s~-s~Dg~v~iwd~~~~~  368 (568)
                        .|....   ...+...........+++++| +|++|+++ ..++.|.+|++....
T Consensus       292 --~g~~~~---~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         292 --CGSIEK---QLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             --TSCEEE---EEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             --CCceee---EeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence              122110   001111111223457789998 68877666 567999999886543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.39  E-value=1.6e-06  Score=85.08  Aligned_cols=177  Identities=10%  Similarity=-0.052  Sum_probs=103.1

Q ss_pred             eEEEEccCCCCcccccCcccEEEEEe-CCCcEEEEECCCCceeeEEeccCC-----------ccCCCCceEEEeeccee-
Q 008363          104 WDVKWKPYNAVDCKCKQRLGYLAVLL-GNGSLEVWEVPLLRTMKAIYLSSM-----------KEGTDPRFVKLEPVFRC-  170 (568)
Q Consensus       104 ~~v~~sp~~~~~~~~~~~~~~las~s-~dg~V~iwd~~~~~~~~~l~~~~~-----------~~~~~~~~v~~~~~~~~-  170 (568)
                      +.++|+|+|          ++|+++. .++.|.+||+.+++....+..+..           +..+.+..+.++..... 
T Consensus       127 ~~~a~SpDG----------k~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~  196 (368)
T d1mdah_         127 HIIGNCASS----------ACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAP  196 (368)
T ss_dssp             TSEEECTTS----------SCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred             cceEECCCC----------CEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCc
Confidence            368999999          6777665 579999999999888877654432           12223333333322110 


Q ss_pred             -------cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC----------CCCee
Q 008363          171 -------SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD----------TLPIR  233 (568)
Q Consensus       171 -------~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h----------~~~V~  233 (568)
                             ......+...+ ..+.+.  +++..+.+.  .+.+.++++.....    ........+          .....
T Consensus       197 ~~~~~~~~~~~~~~~~~~-~~~~~~--~~g~~~~~~--~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~  267 (368)
T d1mdah_         197 AAAGIVGAQCTGAQNCSS-QAAQAN--YPGMLVWAV--ASSILQGDIPAAGA----TMKAAIDGNESGRKADNFRSAGFQ  267 (368)
T ss_dssp             CCCEECCCCSCTTSCBCS-CCEEET--TTTEEEECB--SSCCEEEECCSSCC----EEECCCCSSCTHHHHTTEEECSSS
T ss_pred             eeeeeeecccccccccce-eecccc--cCcEEEEec--CCCEEEEeecCCce----EEEeecccccceeeeeeecCCCce
Confidence                   01112333343 556655  666444443  45677777664421    111111111          12234


Q ss_pred             EEEEccCCCCCCCCcEEEEE-cC--------CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCE-E-EEEeCCCcE
Q 008363          234 AVSWAPAESDSDSANVILTA-GH--------GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGC-V-ILSFDDGAM  301 (568)
Q Consensus       234 ~v~~~p~~~~~~~~~~las~-s~--------d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~-l-~s~~~dg~I  301 (568)
                      .+++++++      ..++.. ..        .. |.+||..+. +.+..+. +...+..++|+|||+. | +++..|+.|
T Consensus       268 ~~a~~~~~------~~~~v~~~~~~~~~~~~~~~v~v~D~~t~-~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v  339 (368)
T d1mdah_         268 MVAKLKNT------DGIMILTVEHSRSCLAAAENTSSVTASVG-QTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVL  339 (368)
T ss_dssp             CEEEETTT------TEEEEEEEECSSCTTSCEEEEEEEESSSC-CEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred             eEEEcCCC------CEEEEEecCCCceeecCCceEEEEECCCC-cEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeE
Confidence            57888887      444332 11        13 889999987 5555543 3456789999999974 4 445668999


Q ss_pred             EEEEcc
Q 008363          302 RIVSLL  307 (568)
Q Consensus       302 ~lwd~~  307 (568)
                      ++||..
T Consensus       340 ~v~D~~  345 (368)
T d1mdah_         340 DIYDAA  345 (368)
T ss_dssp             EEEESS
T ss_pred             EEEECC
Confidence            999994

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.38  E-value=0.00013  Score=69.61  Aligned_cols=209  Identities=9%  Similarity=0.035  Sum_probs=124.5

Q ss_pred             CCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCc
Q 008363           99 NGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGT  178 (568)
Q Consensus        99 ~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~  178 (568)
                      .+-.+..++|.+++          ++.++-...+.|..|+..+......+                          ....
T Consensus        38 ~~~~lEG~~~D~~G----------~Ly~~D~~~g~I~ri~p~g~~~~~~~--------------------------~~~~   81 (319)
T d2dg1a1          38 KGLQLEGLNFDRQG----------QLFLLDVFEGNIFKINPETKEIKRPF--------------------------VSHK   81 (319)
T ss_dssp             SCCCEEEEEECTTS----------CEEEEETTTCEEEEECTTTCCEEEEE--------------------------ECSS
T ss_pred             CCcCcEeCEECCCC----------CEEEEECCCCEEEEEECCCCeEEEEE--------------------------eCCC
Confidence            33334578999998          77777778899988888775544332                          1112


Q ss_pred             CccceEEEEccCCCCCEEEEEeCC--CeEEEEEccCCCCCCCCceeEEeeC--CCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363          179 QSIPLTMEWSTSPPHDYLLAGCHD--GTVALWKFVASDSSIDSRPLLCFSA--DTLPIRAVSWAPAESDSDSANVILTAG  254 (568)
Q Consensus       179 ~~V~~~v~~s~~~~g~~l~sgs~D--g~I~iwd~~~~~~~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~~~~~~las~s  254 (568)
                      .. +..|++.  ++|+++++...+  ....++.+....    .........  -...++.+++.++|      .++++..
T Consensus        82 ~~-p~gla~~--~dG~l~va~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~nd~~~d~~G------~l~vtd~  148 (319)
T d2dg1a1          82 AN-PAAIKIH--KDGRLFVCYLGDFKSTGGIFAATENG----DNLQDIIEDLSTAYCIDDMVFDSKG------GFYFTDF  148 (319)
T ss_dssp             SS-EEEEEEC--TTSCEEEEECTTSSSCCEEEEECTTS----CSCEEEECSSSSCCCEEEEEECTTS------CEEEEEC
T ss_pred             CC-eeEEEEC--CCCCEEEEecCCCccceeEEEEcCCC----ceeeeeccCCCcccCCcceeEEecc------ceeeccc
Confidence            22 3788988  889877776433  233344433221    022222211  12347889999999      7777754


Q ss_pred             CC------C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCCCCCCccCcccc
Q 008363          255 HG------G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQ  326 (568)
Q Consensus       255 ~d------~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~  326 (568)
                      ..      + +..++....  .+..+...-...+.|+|+|+++.|+.+ +..+.|+.||+..       .|..... ...
T Consensus       149 ~~~~~~~~g~v~~~~~dg~--~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~-------~g~~~~~-~~~  218 (319)
T d2dg1a1         149 RGYSTNPLGGVYYVSPDFR--TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED-------DGVTIQP-FGA  218 (319)
T ss_dssp             CCBTTBCCEEEEEECTTSC--CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT-------TSSSEEE-EEE
T ss_pred             ccccccCcceeEEEecccc--eeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcC-------CCceecc-ccc
Confidence            31      2 555554432  222222122335789999999977666 5588999999853       1221100 000


Q ss_pred             ceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363          327 GLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA  366 (568)
Q Consensus       327 ~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~  366 (568)
                      .+............|++..+|++.++....+.|.+|+-..
T Consensus       219 ~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G  258 (319)
T d2dg1a1         219 TIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG  258 (319)
T ss_dssp             EEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred             eeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCC
Confidence            0011111123356899999999989888999999999753

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.34  E-value=2.3e-05  Score=72.72  Aligned_cols=190  Identities=7%  Similarity=-0.057  Sum_probs=120.5

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT  184 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~  184 (568)
                      .|++.+++          .++++....+.|++++-.+...+..                           ...... |..
T Consensus        61 gvav~~~g----------~i~v~d~~~~~i~~~~~~~~~~~~~---------------------------~~~~~~-p~~  102 (260)
T d1rwia_          61 GLAVDGAG----------TVYVTDFNNRVVTLAAGSNNQTVLP---------------------------FDGLNY-PEG  102 (260)
T ss_dssp             CEEECTTC----------CEEEEETTTEEEEECTTCSCCEECC---------------------------CCSCCS-EEE
T ss_pred             EEEEcCCC----------CEEEeeeeeceeeeeeeccceeeee---------------------------eeeeee-ccc
Confidence            78888888          6777766666666655444332211                           111122 378


Q ss_pred             EEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEEC
Q 008363          185 MEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDI  263 (568)
Q Consensus       185 v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~  263 (568)
                      +++.  ++++++++-..+..+..++....      ..............+|++.+++      +++++...+. |..+|.
T Consensus       103 iavd--~~g~i~v~d~~~~~~~~~~~~~~------~~~~~~~~~~~~p~~i~~~~~g------~~~v~~~~~~~i~~~d~  168 (260)
T d1rwia_         103 LAVD--TQGAVYVADRGNNRVVKLAAGSK------TQTVLPFTGLNDPDGVAVDNSG------NVYVTDTDNNRVVKLEA  168 (260)
T ss_dssp             EEEC--TTCCEEEEEGGGTEEEEECTTCS------SCEECCCCSCCSCCEEEECTTC------CEEEEEGGGTEEEEECT
T ss_pred             cccc--ccceeEeeccccccccccccccc------eeeeeeecccCCcceeeecCCC------CEeeecccccccccccc
Confidence            8887  78888877766777777776543      1111111223446789999998      7888877777 999998


Q ss_pred             CCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe-cCCCCEEEEE
Q 008363          264 RDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN-CSSFAIWSVQ  342 (568)
Q Consensus       264 ~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~-~h~~~V~~l~  342 (568)
                      ....... .....-.....|++.++|.++++....+.|..++..         +...        ..+. ..-.....|+
T Consensus       169 ~~~~~~~-~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~---------~~~~--------~~~~~~~~~~P~~i~  230 (260)
T d1rwia_         169 ESNNQVV-LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG---------STTS--------TVLPFTGLNTPLAVA  230 (260)
T ss_dssp             TTCCEEE-CCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTT---------CSCC--------EECCCCSCCCEEEEE
T ss_pred             ccceeee-eeccccCCCccceeeeeeeeeeeecCCCEEEEEeCC---------CCeE--------EEEccCCCCCeEEEE
Confidence            7653222 222334556899999999877777778888888762         2111        1221 1224568999


Q ss_pred             EecCCCEEEEEeCCCeEEEEEc
Q 008363          343 VSRLTGMVAYCSADGTVHRFQL  364 (568)
Q Consensus       343 ~sp~~~~l~s~s~Dg~v~iwd~  364 (568)
                      ++++|.++++-..++.|+.++.
T Consensus       231 ~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         231 VDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             ECTTCCEEEEEGGGTEEEEECC
T ss_pred             EeCCCCEEEEECCCCEEEEEeC
Confidence            9999988877677777765554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=0.00044  Score=63.41  Aligned_cols=186  Identities=13%  Similarity=0.153  Sum_probs=108.2

Q ss_pred             cCccceEEEEccCCCCCEEEEEeCCC---eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363          178 TQSIPLTMEWSTSPPHDYLLAGCHDG---TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG  254 (568)
Q Consensus       178 ~~~V~~~v~~s~~~~g~~l~sgs~Dg---~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s  254 (568)
                      ...+ .+-+|+  |||+.||......   .+.+.+....       ....+..+........|+|++      ..++...
T Consensus        38 ~~~~-~sP~wS--PDGk~IAf~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~spdg------~~i~~~~  101 (269)
T d2hqsa1          38 PQPL-MSPAWS--PDGSKLAYVTFESGRSALVIQTLANG-------AVRQVASFPRHNGAPAFSPDG------SKLAFAL  101 (269)
T ss_dssp             SSCE-EEEEEC--TTSSEEEEEECTTSSCEEEEEETTTC-------CEEEEECCSSCEEEEEECTTS------SEEEEEE
T ss_pred             CCce-eeeEEC--CCCCEEEEEEeeccCcceeeeecccC-------ceeEEeeeecccccceecCCC------CeeeEee
Confidence            3445 788999  9999998765443   3555555433       334555678888999999999      5666554


Q ss_pred             C-CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363          255 H-GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV  331 (568)
Q Consensus       255 ~-d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~  331 (568)
                      . ++ ..++.......................+++++..++..+. ++...+|.....      .+.         ...+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~------~~~---------~~~~  166 (269)
T d2hqsa1         102 SKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN------GGA---------PQRI  166 (269)
T ss_dssp             CTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT------SSC---------CEEC
T ss_pred             ecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecc------ccc---------ceee
Confidence            4 33 3333322222233333344455567778888887776644 555444444211      111         1244


Q ss_pred             ecCCCCEEEEEEecCCCEEEEEeCCC---eEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363          332 NCSSFAIWSVQVSRLTGMVAYCSADG---TVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNT  397 (568)
Q Consensus       332 ~~h~~~V~~l~~sp~~~~l~s~s~Dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~  397 (568)
                      ..+........|+|++..++..+.++   .+.+.+...+.........   ......+++||..|+..+
T Consensus       167 ~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~p~~SPDG~~i~f~s  232 (269)
T d2hqsa1         167 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF---LDETPSLAPNGTMVIYSS  232 (269)
T ss_dssp             CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS---SCEEEEECTTSSEEEEEE
T ss_pred             ecccccccccccccccceeEEEeecCCceeeeEeecccccceEeecCc---cccceEECCCCCEEEEEE
Confidence            45566777889999998888776554   3444455444333221111   112236889999887643

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.30  E-value=8.6e-05  Score=68.64  Aligned_cols=153  Identities=8%  Similarity=0.007  Sum_probs=101.6

Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF  260 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l  260 (568)
                      |..|++.  +++.++++....+.|++++-...      ..+..+ .......+|++.+++      +++++-..+. +..
T Consensus        59 p~gvav~--~~g~i~v~d~~~~~i~~~~~~~~------~~~~~~-~~~~~p~~iavd~~g------~i~v~d~~~~~~~~  123 (260)
T d1rwia_          59 PQGLAVD--GAGTVYVTDFNNRVVTLAAGSNN------QTVLPF-DGLNYPEGLAVDTQG------AVYVADRGNNRVVK  123 (260)
T ss_dssp             CCCEEEC--TTCCEEEEETTTEEEEECTTCSC------CEECCC-CSCCSEEEEEECTTC------CEEEEEGGGTEEEE
T ss_pred             ceEEEEc--CCCCEEEeeeeeceeeeeeeccc------eeeeee-eeeeecccccccccc------eeEeeccccccccc
Confidence            3678877  78888777776666666554322      222222 223457899999998      7777765555 888


Q ss_pred             EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe-cCCCCEE
Q 008363          261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN-CSSFAIW  339 (568)
Q Consensus       261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~-~h~~~V~  339 (568)
                      ++............+ ......++++|+++.+++...++.|..+|...         ...        ..+. ..-....
T Consensus       124 ~~~~~~~~~~~~~~~-~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~---------~~~--------~~~~~~~~~~p~  185 (260)
T d1rwia_         124 LAAGSKTQTVLPFTG-LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES---------NNQ--------VVLPFTDITAPW  185 (260)
T ss_dssp             ECTTCSSCEECCCCS-CCSCCEEEECTTCCEEEEEGGGTEEEEECTTT---------CCE--------EECCCSSCCSEE
T ss_pred             cccccceeeeeeecc-cCCcceeeecCCCCEeeecccccccccccccc---------cee--------eeeeccccCCCc
Confidence            877654332222222 23457899999999877777788899998742         111        1221 3335568


Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363          340 SVQVSRLTGMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       340 ~l~~sp~~~~l~s~s~Dg~v~iwd~~~~  367 (568)
                      .|++.++|.++++....+.|..++....
T Consensus       186 gi~~d~~g~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         186 GIAVDEAGTVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             EEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred             cceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence            9999999998888888888888877544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.29  E-value=8.8e-05  Score=70.73  Aligned_cols=231  Identities=8%  Similarity=-0.033  Sum_probs=133.1

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeC-------CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCC
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLG-------NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGG  177 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~-------dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h  177 (568)
                      .++|.|+|          +++++...       +|+|..||..++.........                       ...
T Consensus        22 Gpa~d~dG----------~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~-----------------------~~~   68 (314)
T d1pjxa_          22 GPVFDKNG----------DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPE-----------------------VNG   68 (314)
T ss_dssp             EEEECTTS----------CEEEEETTCEETTEECCEEEEECTTTCCEEEEECCE-----------------------ETT
T ss_pred             EeEEeCCC----------CEEEEECccccccccCCEEEEEECCCCcEEEEECCc-----------------------ccc
Confidence            67899998          66665432       467888888875543221110                       000


Q ss_pred             cCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe-eCCC----CCeeEEEEccCCCCCCCCcEEEE
Q 008363          178 TQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF-SADT----LPIRAVSWAPAESDSDSANVILT  252 (568)
Q Consensus       178 ~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~----~~V~~v~~~p~~~~~~~~~~las  252 (568)
                      ....|..+.|.  ++++.|+++...+.|..++....      . ...+ ....    ...+.+++.++|      .+++|
T Consensus        69 ~~g~P~Gl~~~--~dg~~l~vad~~~~i~~~~~~g~------~-~~~~~~~~~g~~~~~pndl~~d~~G------~lyvt  133 (314)
T d1pjxa_          69 YGGIPAGCQCD--RDANQLFVADMRLGLLVVQTDGT------F-EEIAKKDSEGRRMQGCNDCAFDYEG------NLWIT  133 (314)
T ss_dssp             EECCEEEEEEC--SSSSEEEEEETTTEEEEEETTSC------E-EECCSBCTTSCBCBCCCEEEECTTS------CEEEE
T ss_pred             CCCcceeEEEe--CCCCEEEEEECCCeEEEEeCCCc------E-EEEEeccccccccCCCcEEEECCCC------CEEEe
Confidence            11114778888  88888888887777888887643      1 1111 1111    136789999998      78877


Q ss_pred             EcC---------------CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCC----EEEEE-eCCCcEEEEEcccccc
Q 008363          253 AGH---------------GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPG----CVILS-FDDGAMRIVSLLKAAY  311 (568)
Q Consensus       253 ~s~---------------d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~----~l~s~-~~dg~I~lwd~~~~~~  311 (568)
                      -..               .+ |..++...  .... +...-..-+.++|+|++.    +|+.+ +..+.|+.||+..   
T Consensus       134 d~~~~~~~~~~~~~~~~~~G~v~~~~~dg--~~~~-~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~---  207 (314)
T d1pjxa_         134 APAGEVAPADYTRSMQEKFGSIYCFTTDG--QMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG---  207 (314)
T ss_dssp             ECBCBCTTSCCCBTTSSSCEEEEEECTTS--CEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE---
T ss_pred             cCccCcccccccceeccCCceEEEEeecC--ceeE-eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccC---
Confidence            532               12 33343322  2111 111122347899999875    45544 6688899998743   


Q ss_pred             CCCCCCCCccCccccceEEEec-CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCC
Q 008363          312 DVPATGKPFAGTKQQGLHLVNC-SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDE  390 (568)
Q Consensus       312 ~~~~~g~~~~~~~~~~l~~~~~-h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~  390 (568)
                          .|....   .+.+..+.+ +....-.+++..+|++.++....+.|.+|+.+.+........ +.....+.++.+++
T Consensus       208 ----~g~~~~---~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~-p~~~~t~~afg~d~  279 (314)
T d1pjxa_         208 ----PAKIEN---KKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC-PFEKPSNLHFKPQT  279 (314)
T ss_dssp             ----TTEEEE---EEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC-SSSCEEEEEECTTS
T ss_pred             ----ccccce---eeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEEC-CCCCEEEEEEeCCC
Confidence                122110   001112222 223456899999999888888889999999887654432111 12223344567777


Q ss_pred             CceEEcc
Q 008363          391 SAITVNT  397 (568)
Q Consensus       391 ~~i~~~~  397 (568)
                      ..+.+..
T Consensus       280 ~~lyVt~  286 (314)
T d1pjxa_         280 KTIFVTE  286 (314)
T ss_dssp             SEEEEEE
T ss_pred             CEEEEEE
Confidence            7676643

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.29  E-value=0.00016  Score=68.90  Aligned_cols=204  Identities=10%  Similarity=0.024  Sum_probs=122.5

Q ss_pred             eEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccce
Q 008363          104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPL  183 (568)
Q Consensus       104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~  183 (568)
                      ..++|.+++          +.|+++...+.|..++....... .+...                      ..+....-|.
T Consensus        74 ~Gl~~~~dg----------~~l~vad~~~~i~~~~~~g~~~~-~~~~~----------------------~~g~~~~~pn  120 (314)
T d1pjxa_          74 AGCQCDRDA----------NQLFVADMRLGLLVVQTDGTFEE-IAKKD----------------------SEGRRMQGCN  120 (314)
T ss_dssp             EEEEECSSS----------SEEEEEETTTEEEEEETTSCEEE-CCSBC----------------------TTSCBCBCCC
T ss_pred             eeEEEeCCC----------CEEEEEECCCeEEEEeCCCcEEE-EEecc----------------------ccccccCCCc
Confidence            379999998          67887877777888887663221 11000                      0111111136


Q ss_pred             EEEEccCCCCCEEEEEeC---------------CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCC-
Q 008363          184 TMEWSTSPPHDYLLAGCH---------------DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA-  247 (568)
Q Consensus       184 ~v~~s~~~~g~~l~sgs~---------------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~-  247 (568)
                      .+++.  ++|.+.++-..               +|.|..++...       ...... .+-...+.|+|++++.  ... 
T Consensus       121 dl~~d--~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-------~~~~~~-~~~~~pNGi~~~~d~d--~~~~  188 (314)
T d1pjxa_         121 DCAFD--YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-------QMIQVD-TAFQFPNGIAVRHMND--GRPY  188 (314)
T ss_dssp             EEEEC--TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-------CEEEEE-EEESSEEEEEEEECTT--SCEE
T ss_pred             EEEEC--CCCCEEEecCccCcccccccceeccCCceEEEEeecC-------ceeEee-CCcceeeeeEECCCCC--ccee
Confidence            67877  78877776432               22343333321       222222 2233457899998760  011 


Q ss_pred             cEEEEEcCCC-EEEEECCCCCcc-----eeeeCC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCc
Q 008363          248 NVILTAGHGG-LKFWDIRDPFRP-----LWDIHP-APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPF  320 (568)
Q Consensus       248 ~~las~s~d~-v~lwD~~~~~~~-----~~~~~~-h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~  320 (568)
                      .++++-+..+ |..||+......     ...+.. +......|++..+|+..++....+.|.+||..        .|+..
T Consensus       189 ~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~--------~g~~~  260 (314)
T d1pjxa_         189 QLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD--------GGQPK  260 (314)
T ss_dssp             EEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT--------CBSCS
T ss_pred             EEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCC--------CCEEE
Confidence            1445555566 888887654221     112222 22335689999999988887788999999873        24332


Q ss_pred             cCccccceEEEecCCCCEEEEEEecCCC-EEEEEeCCCeEEEEEcCCCe
Q 008363          321 AGTKQQGLHLVNCSSFAIWSVQVSRLTG-MVAYCSADGTVHRFQLTAKA  368 (568)
Q Consensus       321 ~~~~~~~l~~~~~h~~~V~~l~~sp~~~-~l~s~s~Dg~v~iwd~~~~~  368 (568)
                              ..+......+++++|.|+++ ++++.+..|.|..+++....
T Consensus       261 --------~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         261 --------MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             --------EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             --------EEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence                    35555566789999999986 55777778999888885433

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=2.1e-05  Score=79.64  Aligned_cols=216  Identities=16%  Similarity=0.160  Sum_probs=124.8

Q ss_pred             EEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEE
Q 008363          106 VKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTM  185 (568)
Q Consensus       106 v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v  185 (568)
                      ..|.+++          .++. -..+|.|.+||+.+++....+...                       .-....+ ...
T Consensus        22 ~~W~~~~----------~~~~-~~~~g~i~~~~~~~~~~~~l~~~~-----------------------~~~~~~~-~~~   66 (465)
T d1xfda1          22 AKWISDT----------EFIY-REQKGTVRLWNVETNTSTVLIEGK-----------------------KIESLRA-IRY   66 (465)
T ss_dssp             CCBSSSS----------CBCC-CCSSSCEEEBCGGGCCCEEEECTT-----------------------TTTTTTC-SEE
T ss_pred             CEEeCCC----------cEEE-EeCCCcEEEEECCCCCEEEEEcCc-----------------------ccccccc-cee
Confidence            4577776          4443 356789999999886543222110                       1112233 566


Q ss_pred             EEccCCCCCEEEEEe---------CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC
Q 008363          186 EWSTSPPHDYLLAGC---------HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG  256 (568)
Q Consensus       186 ~~s~~~~g~~l~sgs---------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d  256 (568)
                      .|+  ||+++|+.+.         ..+.+.|+|+.++..    ..+.........+....|+|+|      +.||-....
T Consensus        67 ~~S--pD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~----~~l~~~~~~~~~l~~~~wSPDG------~~iafv~~~  134 (465)
T d1xfda1          67 EIS--PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP----QSLDPPEVSNAKLQYAGWGPKG------QQLIFIFEN  134 (465)
T ss_dssp             EEC--TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC----EECCCTTCCSCCCSBCCBCSST------TCEEEEETT
T ss_pred             EEC--CCCCeEEEEEcccceeEeeccccEEEEEccCCce----eeccCccCCccccceeeeccCC------ceEEEEecc
Confidence            777  8999888764         357889999987732    3333233334556678999999      778777765


Q ss_pred             CEEEEECCCCCcceeeeCCCCCCe-----------------EEEEEcCCCCEEEEEeC-CCcEEEEEccccccC------
Q 008363          257 GLKFWDIRDPFRPLWDIHPAPKFI-----------------YGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYD------  312 (568)
Q Consensus       257 ~v~lwD~~~~~~~~~~~~~h~~~i-----------------~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~------  312 (568)
                      .|.+.+..++.....+..+..+.|                 ..+.|||||++|+.... +..|..|.+.....+      
T Consensus       135 nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~  214 (465)
T d1xfda1         135 NIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVK  214 (465)
T ss_dssp             EEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCE
T ss_pred             eEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceee
Confidence            588888876532222222222212                 46789999999998754 566666655322110      


Q ss_pred             ---CCCCCCCccCccccceEEEe-----------------cCCCCEEEEEEecCCCEEEEEeC-C---CeEEEEEcCCCe
Q 008363          313 ---VPATGKPFAGTKQQGLHLVN-----------------CSSFAIWSVQVSRLTGMVAYCSA-D---GTVHRFQLTAKA  368 (568)
Q Consensus       313 ---~~~~g~~~~~~~~~~l~~~~-----------------~h~~~V~~l~~sp~~~~l~s~s~-D---g~v~iwd~~~~~  368 (568)
                         -|..|....   ...+..+.                 ....-+..+.|++++++++.... +   ..|.++|..++.
T Consensus       215 ~~~Yp~~G~~np---~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~  291 (465)
T d1xfda1         215 PYHYPKAGSENP---SISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV  291 (465)
T ss_dssp             EEECCBTTSCCC---EEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred             eeeccccCCCCC---ceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCc
Confidence               011121100   00111111                 11123577899999876665432 2   358888888876


Q ss_pred             eec
Q 008363          369 VEK  371 (568)
Q Consensus       369 ~~~  371 (568)
                      ...
T Consensus       292 ~~~  294 (465)
T d1xfda1         292 CTK  294 (465)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.06  E-value=0.00033  Score=66.09  Aligned_cols=195  Identities=8%  Similarity=-0.050  Sum_probs=118.6

Q ss_pred             eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCce-eeEEeccCCccCCCCceEEEeecceecccc
Q 008363           96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRT-MKAIYLSSMKEGTDPRFVKLEPVFRCSMLK  174 (568)
Q Consensus        96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~-~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (568)
                      ....+ .+..++|.|++          +++++...++.+.+|+...... ...+..                        
T Consensus        64 ~~~~~-~~~gla~~~dG----------~l~v~~~~~~~~~~~~~~~~~~~~~~~~~------------------------  108 (302)
T d2p4oa1          64 ATVEG-KVSGLAFTSNG----------DLVATGWNADSIPVVSLVKSDGTVETLLT------------------------  108 (302)
T ss_dssp             EECSS-EEEEEEECTTS----------CEEEEEECTTSCEEEEEECTTSCEEEEEE------------------------
T ss_pred             EcCCC-CcceEEEcCCC----------CeEEEecCCceEEEEEecccccceeeccc------------------------
Confidence            34445 45599999999          7889888889888888755221 111100                        


Q ss_pred             cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee----------CCCCCeeEEEEccCCCCC
Q 008363          175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS----------ADTLPIRAVSWAPAESDS  244 (568)
Q Consensus       175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~----------~h~~~V~~v~~~p~~~~~  244 (568)
                      ...... +..+.+.  +++.++++.+.++.|..++....      .......          ........+.+...    
T Consensus       109 ~~~~~~-~n~i~~~--~~g~~~v~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~----  175 (302)
T d2p4oa1         109 LPDAIF-LNGITPL--SDTQYLTADSYRGAIWLIDVVQP------SGSIWLEHPMLARSNSESVFPAANGLKRFGN----  175 (302)
T ss_dssp             CTTCSC-EEEEEES--SSSEEEEEETTTTEEEEEETTTT------EEEEEEECGGGSCSSTTCCSCSEEEEEEETT----
T ss_pred             cCCccc-cceeEEc--cCCCEEeeccccccceeeeccCC------cceeEecCCccceeeccCcccccccccccCC----
Confidence            111222 3778877  88888888888888888887754      1111110          11223566766654    


Q ss_pred             CCCcEEEEEcCCC-EEEEECCCCCcce-eeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccC
Q 008363          245 DSANVILTAGHGG-LKFWDIRDPFRPL-WDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAG  322 (568)
Q Consensus       245 ~~~~~las~s~d~-v~lwD~~~~~~~~-~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~  322 (568)
                         .++++.+..+ |..+++....... ............++|.++|+++++...++.|..|+..         |+..  
T Consensus       176 ---~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~---------G~~~--  241 (302)
T d2p4oa1         176 ---FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD---------RSTT--  241 (302)
T ss_dssp             ---EEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT---------CCEE--
T ss_pred             ---ceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC---------CCEE--
Confidence               4666666666 8888877542111 1111112335679999999977777788999988762         3321  


Q ss_pred             ccccceEEEecCCCCEEEEEE---ecCCCEEEEEeCC
Q 008363          323 TKQQGLHLVNCSSFAIWSVQV---SRLTGMVAYCSAD  356 (568)
Q Consensus       323 ~~~~~l~~~~~h~~~V~~l~~---sp~~~~l~s~s~D  356 (568)
                          .+......-...++++|   ++|++.|+.++..
T Consensus       242 ----~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         242 ----IIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             ----EEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             ----EEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence                11122223345789999   5677777666544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.98  E-value=0.00022  Score=69.49  Aligned_cols=162  Identities=10%  Similarity=0.053  Sum_probs=98.0

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEe-CCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLL-GNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQS  180 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s-~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~  180 (568)
                      -++++.|+|++          ++|+++. ....|.+|++.....+.....                ..    . ......
T Consensus       146 h~h~v~~sPdG----------~~l~v~d~g~d~v~~~~~~~~g~~~~~~~----------------~~----~-~~~g~g  194 (365)
T d1jofa_         146 GIHGMVFDPTE----------TYLYSADLTANKLWTHRKLASGEVELVGS----------------VD----A-PDPGDH  194 (365)
T ss_dssp             CEEEEEECTTS----------SEEEEEETTTTEEEEEEECTTSCEEEEEE----------------EE----C-SSTTCC
T ss_pred             cceEEEECCCC----------CEEEEeeCCCCEEEEEEccCCCceeeccc----------------ee----e-cCCCCc
Confidence            45799999999          6666665 456788888765222211100                00    0 111122


Q ss_pred             cceEEEEccCCCCCEEEE-EeCCCeEEEEEccCCCCCCCCceeEEee-----------------CCCCCeeEEEEccCCC
Q 008363          181 IPLTMEWSTSPPHDYLLA-GCHDGTVALWKFVASDSSIDSRPLLCFS-----------------ADTLPIRAVSWAPAES  242 (568)
Q Consensus       181 V~~~v~~s~~~~g~~l~s-gs~Dg~I~iwd~~~~~~~~~~~~~~~~~-----------------~h~~~V~~v~~~p~~~  242 (568)
                       |..+.|+  |++.++.+ .-.+++|.+|++.....    ..+....                 .+......|.++|++ 
T Consensus       195 -Pr~i~f~--pdg~~~yv~~e~~~~V~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG-  266 (365)
T d1jofa_         195 -PRWVAMH--PTGNYLYALMEAGNRICEYVIDPATH----MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-  266 (365)
T ss_dssp             -EEEEEEC--TTSSEEEEEETTTTEEEEEEECTTTC----CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-
T ss_pred             -eEEEEEC--CCCceEEEeccCCCEEEEEEecCCCc----eEEEEeeeeccccccccccccccccccCCccceEECCCC-
Confidence             4889988  88887755 44689999999976532    2221111                 112235678999999 


Q ss_pred             CCCCCcEEEEEcC--C----C-EEEEECCCCCcce-----eeeCCCCCCeEEEEEcC-CCCEEEEEe-CCCcEEEEEcc
Q 008363          243 DSDSANVILTAGH--G----G-LKFWDIRDPFRPL-----WDIHPAPKFIYGLDWLP-DPGCVILSF-DDGAMRIVSLL  307 (568)
Q Consensus       243 ~~~~~~~las~s~--d----~-v~lwD~~~~~~~~-----~~~~~h~~~i~~l~~sp-~~~~l~s~~-~dg~I~lwd~~  307 (568)
                           ++|+++..  +    . |..|++.......     ............++++| +|++|+++. .++.|.+|+++
T Consensus       267 -----~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         267 -----KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             -----SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             -----CEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence                 67766532  2    2 6677766442111     11112233457799998 899888875 58999999884

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.91  E-value=0.0025  Score=59.00  Aligned_cols=197  Identities=10%  Similarity=0.034  Sum_probs=119.8

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEE-eC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAG-CH  201 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sg-s~  201 (568)
                      .-|++. .||.|.|-|... ..+..+..       ....+..+....   ...+.... |..+++... .+..+++. +.
T Consensus        26 ~gvavd-~dg~i~VaD~~n-~rI~v~d~-------~G~~~~~~~~~~---~~~~~~~~-p~~~~~~~~-~~~~~~~~~~~   91 (279)
T d1q7fa_          26 SGVAVN-AQNDIIVADTNN-HRIQIFDK-------EGRFKFQFGECG---KRDSQLLY-PNRVAVVRN-SGDIIVTERSP   91 (279)
T ss_dssp             EEEEEC-TTCCEEEEEGGG-TEEEEECT-------TSCEEEEECCBS---SSTTCBSS-EEEEEEETT-TTEEEEEECGG
T ss_pred             cEEEEc-CCCCEEEEECCC-CEEEEEeC-------CCCEEEEecccC---CCcccccc-ccccccccc-ccccceeccCC
Confidence            346654 589999998765 44555421       222333222110   00111111 355555422 23344433 34


Q ss_pred             CCeEEEEEccCCCCCCCCceeEEee-CCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeee--CCCC
Q 008363          202 DGTVALWKFVASDSSIDSRPLLCFS-ADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDI--HPAP  277 (568)
Q Consensus       202 Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~--~~h~  277 (568)
                      ++.|.+++...       .....+. ........+++.+++      .++++..... +.+++...  ..+..+  ..+.
T Consensus        92 ~~~i~~~~~~g-------~~~~~~~~~~~~~p~~~avd~~G------~i~v~~~~~~~~~~~~~~g--~~~~~~g~~~~~  156 (279)
T d1q7fa_          92 THQIQIYNQYG-------QFVRKFGATILQHPRGVTVDNKG------RIIVVECKVMRVIIFDQNG--NVLHKFGCSKHL  156 (279)
T ss_dssp             GCEEEEECTTS-------CEEEEECTTTCSCEEEEEECTTS------CEEEEETTTTEEEEECTTS--CEEEEEECTTTC
T ss_pred             ccccccccccc-------cceeecCCCcccccceeccccCC------cEEEEeeccceeeEeccCC--ceeecccccccc
Confidence            55677776542       4444442 345567899999998      7777777666 88888654  334433  3455


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe--cCCCCEEEEEEecCCCEEEEEeC
Q 008363          278 KFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN--CSSFAIWSVQVSRLTGMVAYCSA  355 (568)
Q Consensus       278 ~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~--~h~~~V~~l~~sp~~~~l~s~s~  355 (568)
                      .....+++.+++..+++....+.|++||.         .|+.+        ..+.  ++......|++.++|.++++-+.
T Consensus       157 ~~~~~i~~d~~g~i~v~d~~~~~V~~~d~---------~G~~~--------~~~g~~g~~~~P~giavD~~G~i~Vad~~  219 (279)
T d1q7fa_         157 EFPNGVVVNDKQEIFISDNRAHCVKVFNY---------EGQYL--------RQIGGEGITNYPIGVGINSNGEILIADNH  219 (279)
T ss_dssp             SSEEEEEECSSSEEEEEEGGGTEEEEEET---------TCCEE--------EEESCTTTSCSEEEEEECTTCCEEEEECS
T ss_pred             cccceeeeccceeEEeeeccccceeeeec---------CCcee--------eeecccccccCCcccccccCCeEEEEECC
Confidence            67789999999988888888899999997         35433        3442  34456789999999997777554


Q ss_pred             -CCeEEEEEcC
Q 008363          356 -DGTVHRFQLT  365 (568)
Q Consensus       356 -Dg~v~iwd~~  365 (568)
                       ++.|.+|+..
T Consensus       220 ~~~~v~~f~~~  230 (279)
T d1q7fa_         220 NNFNLTIFTQD  230 (279)
T ss_dssp             SSCEEEEECTT
T ss_pred             CCcEEEEECCC
Confidence             4579999864

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.64  E-value=0.0023  Score=58.49  Aligned_cols=31  Identities=13%  Similarity=0.219  Sum_probs=24.2

Q ss_pred             EEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          341 VQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       341 l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                      ..|+|+|+.|+.. .++.|+++|+.+++.++-
T Consensus       238 ~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i  268 (281)
T d1k32a2         238 RHLNTDGRRILFS-KGGSIYIFNPDTEKIEKI  268 (281)
T ss_dssp             EEEEESSSCEEEE-ETTEEEEECTTTCCEEEC
T ss_pred             ccCcCCCCEEEEE-eCCEEEEEECCCCCEEEe
Confidence            4689999887764 478899999988776654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.50  E-value=0.0043  Score=58.58  Aligned_cols=152  Identities=11%  Similarity=0.022  Sum_probs=96.5

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC----C-
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG----G-  257 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d----~-  257 (568)
                      -.++|.  ++|+++++-...+.|..|+....      .....+.........|+|+++|      .++++...+    + 
T Consensus        43 EG~~~D--~~G~Ly~~D~~~g~I~ri~p~g~------~~~~~~~~~~~~p~gla~~~dG------~l~va~~~~~~~~~~  108 (319)
T d2dg1a1          43 EGLNFD--RQGQLFLLDVFEGNIFKINPETK------EIKRPFVSHKANPAAIKIHKDG------RLFVCYLGDFKSTGG  108 (319)
T ss_dssp             EEEEEC--TTSCEEEEETTTCEEEEECTTTC------CEEEEEECSSSSEEEEEECTTS------CEEEEECTTSSSCCE
T ss_pred             EeCEEC--CCCCEEEEECCCCEEEEEECCCC------eEEEEEeCCCCCeeEEEECCCC------CEEEEecCCCcccee
Confidence            467888  88988888888999999987755      4444555556678999999998      777765432    2 


Q ss_pred             EEEEECCCCCcceeeeC--CCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363          258 LKFWDIRDPFRPLWDIH--PAPKFIYGLDWLPDPGCVILSFD------DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH  329 (568)
Q Consensus       258 v~lwD~~~~~~~~~~~~--~h~~~i~~l~~sp~~~~l~s~~~------dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~  329 (568)
                      |...+.... .......  .-....+.+++.|+|++.++...      .+.++.++.         .+..+        .
T Consensus       109 i~~~~~~~~-~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~---------dg~~~--------~  170 (319)
T d2dg1a1         109 IFAATENGD-NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSP---------DFRTV--------T  170 (319)
T ss_dssp             EEEECTTSC-SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECT---------TSCCE--------E
T ss_pred             EEEEcCCCc-eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEec---------cccee--------E
Confidence            444454443 2222221  11234688999999986665432      123444443         12221        2


Q ss_pred             EEecCCCCEEEEEEecCCCEE-EEEeCCCeEEEEEcCC
Q 008363          330 LVNCSSFAIWSVQVSRLTGMV-AYCSADGTVHRFQLTA  366 (568)
Q Consensus       330 ~~~~h~~~V~~l~~sp~~~~l-~s~s~Dg~v~iwd~~~  366 (568)
                      .+...-...+.++|+|+++.| ++-+..+.|+.|++..
T Consensus       171 ~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~  208 (319)
T d2dg1a1         171 PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED  208 (319)
T ss_dssp             EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             EEeeccceeeeeeeccccceEEEecccCCceEEEEEcC
Confidence            322233445789999999755 5556788999999853

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.44  E-value=0.035  Score=51.33  Aligned_cols=184  Identities=7%  Similarity=-0.061  Sum_probs=110.7

Q ss_pred             eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCC-cCc
Q 008363          102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGG-TQS  180 (568)
Q Consensus       102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h-~~~  180 (568)
                      .+.++++.+++          .+++ ++.+ .|.++|..+++..... ...                      .+. ...
T Consensus        60 ~~~~i~~~~dg----------~l~v-a~~~-gl~~~d~~tg~~~~l~-~~~----------------------~~~~~~~  104 (295)
T d2ghsa1          60 MGSALAKISDS----------KQLI-ASDD-GLFLRDTATGVLTLHA-ELE----------------------SDLPGNR  104 (295)
T ss_dssp             CEEEEEEEETT----------EEEE-EETT-EEEEEETTTCCEEEEE-CSS----------------------TTCTTEE
T ss_pred             CcEEEEEecCC----------CEEE-EEeC-ccEEeecccceeeEEe-eee----------------------cCCCccc
Confidence            34488888888          5555 4555 4888999886543221 100                      111 112


Q ss_pred             cceEEEEccCCCCCEEEEEeC----CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC
Q 008363          181 IPLTMEWSTSPPHDYLLAGCH----DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG  256 (568)
Q Consensus       181 V~~~v~~s~~~~g~~l~sgs~----Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d  256 (568)
                      + ..+...  ++|++.++...    .+.-.+|.+..+      .....+.. -...+.++|++++.     .++++-+..
T Consensus       105 ~-nd~~vd--~~G~iw~~~~~~~~~~~~g~l~~~~~g------~~~~~~~~-~~~~Ng~~~s~d~~-----~l~~~dt~~  169 (295)
T d2ghsa1         105 S-NDGRMH--PSGALWIGTMGRKAETGAGSIYHVAKG------KVTKLFAD-ISIPNSICFSPDGT-----TGYFVDTKV  169 (295)
T ss_dssp             E-EEEEEC--TTSCEEEEEEETTCCTTCEEEEEEETT------EEEEEEEE-ESSEEEEEECTTSC-----EEEEEETTT
T ss_pred             c-eeeEEC--CCCCEEEEeccccccccceeEeeecCC------cEEEEeec-cCCcceeeecCCCc-----eEEEeeccc
Confidence            2 566655  78876665432    234456666544      33333322 33467899999982     345555656


Q ss_pred             C-EEEEECCCCC------c-ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363          257 G-LKFWDIRDPF------R-PLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL  328 (568)
Q Consensus       257 ~-v~lwD~~~~~------~-~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l  328 (568)
                      + |..+++....      . ....+.+..+....+++..+|++.++.-..+.|..||.         .|+.+        
T Consensus       170 ~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp---------~G~~~--------  232 (295)
T d2ghsa1         170 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT---------DGNHI--------  232 (295)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT---------TCCEE--------
T ss_pred             ceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC---------CCcEe--------
Confidence            6 9888875321      1 11222334555789999999997777777888999997         35543        


Q ss_pred             EEEecCCCCEEEEEEe-cCCCEEEE
Q 008363          329 HLVNCSSFAIWSVQVS-RLTGMVAY  352 (568)
Q Consensus       329 ~~~~~h~~~V~~l~~s-p~~~~l~s  352 (568)
                      ..+.--...+++++|- ++.+.|+.
T Consensus       233 ~~i~lP~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         233 ARYEVPGKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             EEEECSCSBEEEEEEESTTSCEEEE
T ss_pred             eEecCCCCceEEEEEeCCCCCEEEE
Confidence            4555445678999996 56544443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.39  E-value=0.051  Score=50.17  Aligned_cols=231  Identities=10%  Similarity=-0.013  Sum_probs=132.6

Q ss_pred             EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363          105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT  184 (568)
Q Consensus       105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~  184 (568)
                      ...|.+...         .++.+--..+.|.-||..+++.. .+                 .          ....+ .+
T Consensus        22 gp~wd~~~~---------~l~wvDi~~~~I~r~d~~~g~~~-~~-----------------~----------~~~~~-~~   63 (295)
T d2ghsa1          22 GPTFDPASG---------TAWWFNILERELHELHLASGRKT-VH-----------------A----------LPFMG-SA   63 (295)
T ss_dssp             EEEEETTTT---------EEEEEEGGGTEEEEEETTTTEEE-EE-----------------E----------CSSCE-EE
T ss_pred             CCeEECCCC---------EEEEEECCCCEEEEEECCCCeEE-EE-----------------E----------CCCCc-EE
Confidence            456887552         44444446788888998886432 11                 0          11223 67


Q ss_pred             EEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC--CCCeeEEEEccCCCCCCCCcEEEEEcCC----C-
Q 008363          185 MEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD--TLPIRAVSWAPAESDSDSANVILTAGHG----G-  257 (568)
Q Consensus       185 v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h--~~~V~~v~~~p~~~~~~~~~~las~s~d----~-  257 (568)
                      +++.  ++|.+++ ++.+ .|.++|..++..    ..+......  ...++++.+.|+|      .+.++....    + 
T Consensus        64 i~~~--~dg~l~v-a~~~-gl~~~d~~tg~~----~~l~~~~~~~~~~~~nd~~vd~~G------~iw~~~~~~~~~~~~  129 (295)
T d2ghsa1          64 LAKI--SDSKQLI-ASDD-GLFLRDTATGVL----TLHAELESDLPGNRSNDGRMHPSG------ALWIGTMGRKAETGA  129 (295)
T ss_dssp             EEEE--ETTEEEE-EETT-EEEEEETTTCCE----EEEECSSTTCTTEEEEEEEECTTS------CEEEEEEETTCCTTC
T ss_pred             EEEe--cCCCEEE-EEeC-ccEEeeccccee----eEEeeeecCCCcccceeeEECCCC------CEEEEeccccccccc
Confidence            7766  6775554 5555 588899887621    222211111  1247899999999      676665321    2 


Q ss_pred             EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCC
Q 008363          258 LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSF  336 (568)
Q Consensus       258 v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~  336 (568)
                      -.+|.+..+ .....+.. -...+.++|+++++.++.+ +..+.|+.|++....      +....  ....+..+.+..+
T Consensus       130 g~l~~~~~g-~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~------~~~~~--~~~~~~~~~~~~g  199 (295)
T d2ghsa1         130 GSIYHVAKG-KVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDART------GLPTG--KAEVFIDSTGIKG  199 (295)
T ss_dssp             EEEEEEETT-EEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTT------CCBSS--CCEEEEECTTSSS
T ss_pred             eeEeeecCC-cEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccc------ccccc--ceEEEeccCcccc
Confidence            566666554 32222221 2335899999999977666 557889999874311      11110  0011122333455


Q ss_pred             CEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeeccc-CCCCceEEcccC
Q 008363          337 AIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVT-EDESAITVNTPL  399 (568)
Q Consensus       337 ~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~i~~~~~~  399 (568)
                      ....+++..+|.+.++.-..+.|..||-... ....... +.+...+.++- ++.+.|.+.+..
T Consensus       200 ~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~-~~~~i~l-P~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         200 GMDGSVCDAEGHIWNARWGEGAVDRYDTDGN-HIARYEV-PGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             EEEEEEECTTSCEEEEEETTTEEEEECTTCC-EEEEEEC-SCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             cccceEEcCCCCEEeeeeCCCceEEecCCCc-EeeEecC-CCCceEEEEEeCCCCCEEEEEECC
Confidence            6788999999998888778889999997543 3333221 22233333343 455667665543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00088  Score=67.28  Aligned_cols=158  Identities=17%  Similarity=0.191  Sum_probs=91.4

Q ss_pred             EEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC-CCCCeeEEEEccCCCCCCCCcEEEEEc--------
Q 008363          184 TMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA-DTLPIRAVSWAPAESDSDSANVILTAG--------  254 (568)
Q Consensus       184 ~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~~~~~~las~s--------  254 (568)
                      ...|.  +++.++. -..+|.|.+||+.++..    ..+..... ..-.+....|+|++      ++++...        
T Consensus        21 ~~~W~--~~~~~~~-~~~~g~i~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~SpD~------~~vl~~~~~~~~~r~   87 (465)
T d1xfda1          21 EAKWI--SDTEFIY-REQKGTVRLWNVETNTS----TVLIEGKKIESLRAIRYEISPDR------EYALFSYNVEPIYQH   87 (465)
T ss_dssp             CCCBS--SSSCBCC-CCSSSCEEEBCGGGCCC----EEEECTTTTTTTTCSEEEECTTS------SEEEEEESCCCCSSS
T ss_pred             CCEEe--CCCcEEE-EeCCCcEEEEECCCCCE----EEEEcCccccccccceeEECCCC------CeEEEEEcccceeEe
Confidence            35687  6665544 45688999999987722    22221111 22357788899999      6665543        


Q ss_pred             -CCC-EEEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCcc--CccccceE
Q 008363          255 -HGG-LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFA--GTKQQGLH  329 (568)
Q Consensus       255 -~d~-v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~--~~~~~~l~  329 (568)
                       ..+ +.++|+.++. .++.........+....|||||+.|+... ++.|++.+...        +....  ...... .
T Consensus        88 s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~--------~~~~~lt~~g~~~-~  157 (465)
T d1xfda1          88 SYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVG--------KQAIRVVSTGKEG-V  157 (465)
T ss_dssp             CCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSS--------SCCEEEECCCBTT-T
T ss_pred             eccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCC--------CceEEEecccCcc-e
Confidence             235 8899998763 22222223344566789999999998876 56787777632        22210  000000 0


Q ss_pred             EEecCC---------CCEEEEEEecCCCEEEEEeCC-CeEEEEEc
Q 008363          330 LVNCSS---------FAIWSVQVSRLTGMVAYCSAD-GTVHRFQL  364 (568)
Q Consensus       330 ~~~~h~---------~~V~~l~~sp~~~~l~s~s~D-g~v~iwd~  364 (568)
                      .+.|..         ..-.++.|||||++||....| ..|..+.+
T Consensus       158 i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         158 IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred             eeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeec
Confidence            111111         112467899999999987643 33444443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.87  E-value=0.16  Score=46.15  Aligned_cols=220  Identities=14%  Similarity=0.209  Sum_probs=130.6

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD  202 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D  202 (568)
                      ..||.-+ ..++.|+|+++.+.++..                           .....| .--.|-  .+ +.|+..+ +
T Consensus        75 ~IiALra-g~~LQiFnletK~klks~---------------------------~~~e~V-vfWkWi--s~-~~L~lVT-~  121 (327)
T d1utca2          75 KVIALKA-GKTLQIFNIEMKSKMKAH---------------------------TMTDDV-TFWKWI--SL-NTVALVT-D  121 (327)
T ss_dssp             SEEEEEE-TTEEEEEETTTTEEEEEE---------------------------ECSSCC-CEEEES--SS-SEEEEEC-S
T ss_pred             cEEEEec-CCeEEEEehhHhhhhceE---------------------------EcCCCc-EEEEec--CC-CEEEEEc-C
Confidence            6787776 468999999998877664                           222344 566776  33 5666665 5


Q ss_pred             CeEEEEEccCCCCCCCCceeEEeeCCC----CCeeEEEEccCCCCCCCCcEEEEEcC-------CC-EEEEECCCCCcce
Q 008363          203 GTVALWKFVASDSSIDSRPLLCFSADT----LPIRAVSWAPAESDSDSANVILTAGH-------GG-LKFWDIRDPFRPL  270 (568)
Q Consensus       203 g~I~iwd~~~~~~~~~~~~~~~~~~h~----~~V~~v~~~p~~~~~~~~~~las~s~-------d~-v~lwD~~~~~~~~  270 (568)
                      ..|.-|++...     ..|...|..|.    ..|-.-..+++.      ++++-.|-       .| +.||.....  .-
T Consensus       122 taVYHW~~~g~-----s~P~k~fdR~~~L~~~QIInY~~d~~~------kW~~l~GI~~~~~~i~G~mQLYS~er~--~s  188 (327)
T d1utca2         122 NAVYHWSMEGE-----SQPVKMFDRHSSLAGCQIINYRTDAKQ------KWLLLTGISAQQNRVVGAMQLYSVDRK--VS  188 (327)
T ss_dssp             SEEEEEESSSS-----CCCEEEEECCGGGTTCEEEEEEECTTS------CEEEEEEEEEETTEEEEEEEEEETTTT--EE
T ss_pred             CceEEEcccCC-----CCchhhhhhcccccCceEEEEEECCCC------CEEEEEeEecCCCceeEEEEEEEeccC--cC
Confidence            58999999643     36788887764    346666777777      77765431       25 889988753  33


Q ss_pred             eeeCCCCCCeEEEEEcC--CCCEEE-EE---eCCCcEEEEEccccccCCCCCCCCccCccccceEEEe---cCCCCEEEE
Q 008363          271 WDIHPAPKFIYGLDWLP--DPGCVI-LS---FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN---CSSFAIWSV  341 (568)
Q Consensus       271 ~~~~~h~~~i~~l~~sp--~~~~l~-s~---~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~---~h~~~V~~l  341 (568)
                      ..+.+|.+....+.+.-  +...|+ .+   ...+.+++.++.....    .+.++.   .+.+..+.   ...+-..++
T Consensus       189 Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~----g~~~f~---kk~vdi~fppea~~DFPvam  261 (327)
T d1utca2         189 QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPT----GNQPFP---KKAVDVFFPPEAQNDFPVAM  261 (327)
T ss_dssp             EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCT----TCCCCC---CEEEECCCCTTCTTCCEEEE
T ss_pred             ccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCcc----CCCCCc---ceeEEEECCccccCCcEEEE
Confidence            45666654333333221  111122 22   2246889999854321    112211   01111111   112345688


Q ss_pred             EEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEE
Q 008363          342 QVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITV  395 (568)
Q Consensus       342 ~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~  395 (568)
                      .+++...++...+.-|.|++||++++.......-...+-|.+......++.+.+
T Consensus       262 qvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~V  315 (327)
T d1utca2         262 QISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGV  315 (327)
T ss_dssp             EEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEE
T ss_pred             EeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEE
Confidence            999999999999999999999999987654422223344444443433444433

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.83  E-value=0.16  Score=48.52  Aligned_cols=234  Identities=8%  Similarity=0.022  Sum_probs=126.4

Q ss_pred             cEEEEE-eCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeC
Q 008363          123 GYLAVL-LGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH  201 (568)
Q Consensus       123 ~~las~-s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~  201 (568)
                      ++|.+. ..+.+|.+-|+.+.++.+.+.-+.                         ...+ ..+...+.|+..+++.++.
T Consensus       100 rylFVNDkan~RVAvIdl~~fkt~kIi~iPn-------------------------~~~~-HG~r~~~~p~T~YV~~~~e  153 (459)
T d1fwxa2         100 RFLFMNDKANTRVARVRCDVMKCDAILEIPN-------------------------AKGI-HGLRPQKWPRSNYVFCNGE  153 (459)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECSS-------------------------CCSE-EEEEECCSSBCSEEEEEEC
T ss_pred             eEEEEEcCCCceEEEEECcceeeeEEEecCC-------------------------CCCC-ceeecccCCCeEEEEccCc
Confidence            455544 468899999999988876542221                         1111 2233223345556666655


Q ss_pred             CC------------------eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-------
Q 008363          202 DG------------------TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-------  256 (568)
Q Consensus       202 Dg------------------~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-------  256 (568)
                      +.                  .+.++|..+.      +....+.. .+....++++++|      +++++.+.+       
T Consensus       154 ~~vP~pndg~~l~d~~~y~~~~t~ID~~tm------~V~~QV~V-~g~ld~~~~s~dG------K~af~TsyNSE~g~~l  220 (459)
T d1fwxa2         154 DETPLVNDGTNMEDVANYVNVFTAVDADKW------EVAWQVLV-SGNLDNCDADYEG------KWAFSTSYNSEKGMTL  220 (459)
T ss_dssp             SCEESSCSSSSTTCGG-EEEEEEEEETTTT------EEEEEEEE-SSCCCCEEECSSS------SEEEEEESCTTCCSSH
T ss_pred             cccccCCCCccccchhhcceEEEEEecCCc------eEEEEeee-CCChhccccCCCC------CEEEEEeccccCCcch
Confidence            32                  3566777655      33332222 2346678999999      676665432       


Q ss_pred             --------------------------------CEEEEECCCCC--cceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCcE
Q 008363          257 --------------------------------GLKFWDIRDPF--RPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DGAM  301 (568)
Q Consensus       257 --------------------------------~v~lwD~~~~~--~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~I  301 (568)
                                                      ++.+-|.+...  ..+..+. -......+.++|||+++++++. +.++
T Consensus       221 ~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tV  299 (459)
T d1fwxa2         221 PEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTV  299 (459)
T ss_dssp             HHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBE
T ss_pred             hhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcE
Confidence                                            24555554321  1111111 1122346899999999999876 9999


Q ss_pred             EEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC----------eeec
Q 008363          302 RIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK----------AVEK  371 (568)
Q Consensus       302 ~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~----------~~~~  371 (568)
                      .++|++++..-......+.     ..+..-....-.-...+|...|....|.--|..|.-|++...          .+..
T Consensus       300 SViD~~Ki~~~~~~~~~~~-----~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~  374 (459)
T d1fwxa2         300 TVLDVTRFDAVFYENADPR-----SAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKD  374 (459)
T ss_dssp             EEEEGGGHHHHHHSCC-GG-----GGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEE
T ss_pred             EEEEehhhhhhhcccCCcc-----ccEEeecccCcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCccee
Confidence            9999976542100000000     111111112223355688887765666668999999998532          1111


Q ss_pred             cCCCCCcceeeee----cccCCCCceEEcccCCC
Q 008363          372 DHSRNRPMHFLCG----SVTEDESAITVNTPLDN  401 (568)
Q Consensus       372 ~~~~~~~~~~~~~----s~~~~~~~i~~~~~~~~  401 (568)
                      ...-+-.+..++.    ...++|..+.....++.
T Consensus       375 k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk~sk  408 (459)
T d1fwxa2         375 KLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSK  408 (459)
T ss_dssp             EEECSSCEEEEEETTTTSTTCCSSEEEEEESCCT
T ss_pred             ccccccCCCCCccCcCCcCCCCCCEEEEeccccc
Confidence            1122223333433    34667777776544333

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.41  E-value=0.43  Score=45.50  Aligned_cols=227  Identities=9%  Similarity=0.027  Sum_probs=118.3

Q ss_pred             cEEEEEeCCCcEEEEECCCCceeeEEeccCCc----------------cCCCCceEEEeecceecccc--cCCcCccceE
Q 008363          123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMK----------------EGTDPRFVKLEPVFRCSMLK--CGGTQSIPLT  184 (568)
Q Consensus       123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~----------------~~~~~~~v~~~~~~~~~~~~--~~h~~~V~~~  184 (568)
                      -.+.+|+..|.|+|+-+++++.++.+.--+..                .+-.+..-...+..-.....  ..|-    -.
T Consensus        14 y~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HH----P~   89 (459)
T d1fwxa2          14 YGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHH----VH   89 (459)
T ss_dssp             EEEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCC----EE
T ss_pred             EEEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCC----Cc
Confidence            35788999999999999999988877332220                00000000000000000000  0111    12


Q ss_pred             EEEc-cCCCCCEEEEEe-CCCeEEEEEccCCCCCCCCceeEEee-CCCCCeeEEEEccCCCCCCCCcEEEEEcCCC----
Q 008363          185 MEWS-TSPPHDYLLAGC-HDGTVALWKFVASDSSIDSRPLLCFS-ADTLPIRAVSWAPAESDSDSANVILTAGHGG----  257 (568)
Q Consensus       185 v~~s-~~~~g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~~~~las~s~d~----  257 (568)
                      +.+- -.+||++|++.. .+..|.+.|+...      ++..... .....+..+...++.    ...+++..+...    
T Consensus        90 ~S~TdGtyDGrylFVNDkan~RVAvIdl~~f------kt~kIi~iPn~~~~HG~r~~~~p----~T~YV~~~~e~~vP~p  159 (459)
T d1fwxa2          90 MSFTEGKYDGRFLFMNDKANTRVARVRCDVM------KCDAILEIPNAKGIHGLRPQKWP----RSNYVFCNGEDETPLV  159 (459)
T ss_dssp             EEEETTEEEEEEEEEEETTTTEEEEEETTTT------EEEEEEECSSCCSEEEEEECCSS----BCSEEEEEECSCEESS
T ss_pred             ccccCCccceeEEEEEcCCCceEEEEECcce------eeeEEEecCCCCCCceeecccCC----CeEEEEccCccccccC
Confidence            2322 113677776665 6789999999876      5544332 334556777665543    225666665532    


Q ss_pred             ---------------EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCC---------------cEEEEEcc
Q 008363          258 ---------------LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDG---------------AMRIVSLL  307 (568)
Q Consensus       258 ---------------v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg---------------~I~lwd~~  307 (568)
                                     +.++|..+. ...+.+.- .+....+.++|+|+++++.+.+.               .+.+++..
T Consensus       160 ndg~~l~d~~~y~~~~t~ID~~tm-~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~  237 (459)
T d1fwxa2         160 NDGTNMEDVANYVNVFTAVDADKW-EVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA  237 (459)
T ss_dssp             CSSSSTTCGG-EEEEEEEEETTTT-EEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH
T ss_pred             CCCccccchhhcceEEEEEecCCc-eEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechH
Confidence                           466787765 33322221 23456789999999999987532               14444432


Q ss_pred             ccccCCC------CCCCCc-cCc---cccceEEEecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEEcCC
Q 008363          308 KAAYDVP------ATGKPF-AGT---KQQGLHLVNCSSFAIWSVQVSRLTGMVAYCS-ADGTVHRFQLTA  366 (568)
Q Consensus       308 ~~~~~~~------~~g~~~-~~~---~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~  366 (568)
                      ....-.+      ..|-.+ ...   ....+..+....+ ...+.++|||+++++++ .+.+|-|+|++.
T Consensus       238 rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKs-PHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         238 EIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANN-PHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             HHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESS-CCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             HhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCC-CCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence            1100000      000000 000   0011122222222 36789999998877665 789999999963

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.54  E-value=0.08  Score=47.51  Aligned_cols=117  Identities=10%  Similarity=-0.026  Sum_probs=69.1

Q ss_pred             EEccC--CCCCCCCcEEEEEcCCCEEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CC-----cEEEEEcc
Q 008363          236 SWAPA--ESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DG-----AMRIVSLL  307 (568)
Q Consensus       236 ~~~p~--~~~~~~~~~las~s~d~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg-----~I~lwd~~  307 (568)
                      ..+|+  |      +.+|-.+.+.|.+.|+.++ .. ..+..+.+.+...+|||||+.|+.... ++     .|.+++..
T Consensus         5 ~~sPdi~G------~~v~f~~~~dl~~~d~~~g-~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~   76 (281)
T d1k32a2           5 LLNPDIHG------DRIIFVCCDDLWEHDLKSG-ST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE   76 (281)
T ss_dssp             CEEEEEET------TEEEEEETTEEEEEETTTC-CE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT
T ss_pred             ccCCCCCC------CEEEEEeCCcEEEEECCCC-CE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEec
Confidence            35677  7      6777666555999999876 33 345556777899999999999987643 22     35566652


Q ss_pred             ccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCC------CeEEEEEcCCCeee
Q 008363          308 KAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD------GTVHRFQLTAKAVE  370 (568)
Q Consensus       308 ~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D------g~v~iwd~~~~~~~  370 (568)
                              +|+...-+  ..-............+.|+|+|+.|+.....      ..+...+...+...
T Consensus        77 --------~g~~~~lt--~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (281)
T d1k32a2          77 --------NGEIKRIT--YFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV  135 (281)
T ss_dssp             --------TTEEEECC--CCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE
T ss_pred             --------CCceEEee--ecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeE
Confidence                    23221000  0000111222345678999999988876432      23555555554443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.55  E-value=0.24  Score=46.74  Aligned_cols=161  Identities=8%  Similarity=-0.001  Sum_probs=92.1

Q ss_pred             CCCCEEEEEeCCC-----------eEEEEEccCCCCCCCCceeEE-eeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-
Q 008363          191 PPHDYLLAGCHDG-----------TVALWKFVASDSSIDSRPLLC-FSADTLPIRAVSWAPAESDSDSANVILTAGHGG-  257 (568)
Q Consensus       191 ~~g~~l~sgs~Dg-----------~I~iwd~~~~~~~~~~~~~~~-~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-  257 (568)
                      .+|++++.|+.+.           .+.+||..+..+    ..... ...|.......++.+++      .+++.|+.+. 
T Consensus        29 ~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w----~~~~~~~~~~~~~~~~~~~~~~g------~i~v~Gg~~~~   98 (387)
T d1k3ia3          29 TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV----SDRTVTVTKHDMFCPGISMDGNG------QIVVTGGNDAK   98 (387)
T ss_dssp             TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB----CCCEEEECSCCCSSCEEEECTTS------CEEEECSSSTT
T ss_pred             eCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcE----eecCCCCCCcccceeEEEEecCC------cEEEeecCCCc
Confidence            4678888888531           377999998755    22222 22344445677888998      8888887764 


Q ss_pred             -EEEEECCCCCc-ceeeeCCCCCCeEEEEEcCCCCEEEEEeCC------CcEEEEEccccccC-CCCCCCCccCccccce
Q 008363          258 -LKFWDIRDPFR-PLWDIHPAPKFIYGLDWLPDPGCVILSFDD------GAMRIVSLLKAAYD-VPATGKPFAGTKQQGL  328 (568)
Q Consensus       258 -v~lwD~~~~~~-~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d------g~I~lwd~~~~~~~-~~~~g~~~~~~~~~~l  328 (568)
                       +.+||..+..- ....+. ....-..++..+||+.++.|+.+      ..+.+||.....-. .+.....        .
T Consensus        99 ~~~~yd~~~~~w~~~~~~~-~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--------~  169 (387)
T d1k3ia3          99 KTSLYDSSSDSWIPGPDMQ-VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVN--------P  169 (387)
T ss_dssp             CEEEEEGGGTEEEECCCCS-SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSG--------G
T ss_pred             ceeEecCccCccccccccc-ccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCccc--------c
Confidence             99999986531 111111 12223467778899999998752      36889998542100 0000000        0


Q ss_pred             EEEecCC-----CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee
Q 008363          329 HLVNCSS-----FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE  370 (568)
Q Consensus       329 ~~~~~h~-----~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~  370 (568)
                      .....+.     ..-..+...+++..++.++.++.+.+++..+....
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~  216 (387)
T d1k3ia3         170 MLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK  216 (387)
T ss_dssp             GCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE
T ss_pred             cccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEe
Confidence            0000010     00011233456777888887888888887766544

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.32  E-value=2.5  Score=37.38  Aligned_cols=201  Identities=7%  Similarity=-0.028  Sum_probs=113.4

Q ss_pred             eeEEEEccCCCCcccccCcccEEEEE-eCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363          103 AWDVKWKPYNAVDCKCKQRLGYLAVL-LGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI  181 (568)
Q Consensus       103 v~~v~~sp~~~~~~~~~~~~~~las~-s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V  181 (568)
                      +..|+|.+..          +.|... ..++.|+..++........+                          ......+
T Consensus        38 ~~~ld~D~~~----------~~iywsd~~~~~I~~~~l~g~~~~~v~--------------------------~~~~~~p   81 (263)
T d1npea_          38 IIGLAFDCVD----------KVVYWTDISEPSIGRASLHGGEPTTII--------------------------RQDLGSP   81 (263)
T ss_dssp             EEEEEEETTT----------TEEEEEETTTTEEEEEESSSCCCEEEE--------------------------CTTCCCE
T ss_pred             EEEEEEEeCC----------CEEEEEECCCCeEEEEEcccCCcEEEE--------------------------Eeccccc
Confidence            3388998877          444444 55677888887764332221                          1111111


Q ss_pred             -ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-CEE
Q 008363          182 -PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-GLK  259 (568)
Q Consensus       182 -~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-~v~  259 (568)
                       +.+++|.   .+.+..+-...+.|.+.++...      .....+......+..|+++|..     ..++.+-... ..+
T Consensus        82 ~~iAvD~~---~~~lY~~d~~~~~I~~~~~dg~------~~~~l~~~~l~~p~~l~vdp~~-----g~ly~t~~~~~~~~  147 (263)
T d1npea_          82 EGIALDHL---GRTIFWTDSQLDRIEVAKMDGT------QRRVLFDTGLVNPRGIVTDPVR-----GNLYWTDWNRDNPK  147 (263)
T ss_dssp             EEEEEETT---TTEEEEEETTTTEEEEEETTSC------SCEEEECSSCSSEEEEEEETTT-----TEEEEEECCSSSCE
T ss_pred             cEEEEecc---CCeEEEeccCCCEEEEEecCCc------eEEEEecccccCCcEEEEeccc-----CcEEEeecCCCCcE
Confidence             2455554   3344556666789999998754      2222233334568999999987     1444443322 244


Q ss_pred             EE--ECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCC
Q 008363          260 FW--DIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSF  336 (568)
Q Consensus       260 lw--D~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~  336 (568)
                      ||  ++... .........-...+.|++.+.+..|+.+ ...+.|...|+..         ...       ...+.+.. 
T Consensus       148 I~r~~~dG~-~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g---------~~~-------~~v~~~~~-  209 (263)
T d1npea_         148 IETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ---------PGR-------RKVLEGLQ-  209 (263)
T ss_dssp             EEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE---------EEE-------EEEEECCC-
T ss_pred             EEEecCCCC-CceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCC---------CCe-------EEEECCCC-
Confidence            54  55543 2222232233456899999888878666 4578898888842         111       11233333 


Q ss_pred             CEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363          337 AIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD  372 (568)
Q Consensus       337 ~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~  372 (568)
                      ...+|++. .+.+..+-...+.|...|..+++....
T Consensus       210 ~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~  244 (263)
T d1npea_         210 YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDT  244 (263)
T ss_dssp             SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceE
Confidence            34577775 334444444668888888887765443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.41  E-value=3.5  Score=36.97  Aligned_cols=103  Identities=13%  Similarity=0.180  Sum_probs=75.6

Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcce
Q 008363          191 PPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPL  270 (568)
Q Consensus       191 ~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~  270 (568)
                      |....||.-+ ..++.|+|+++.      ..+..+.- ...|.--.|-.+       +.|+-.....|+-|++.....|.
T Consensus        72 P~~~IiALra-g~~LQiFnletK------~klks~~~-~e~VvfWkWis~-------~~L~lVT~taVYHW~~~g~s~P~  136 (327)
T d1utca2          72 PASKVIALKA-GKTLQIFNIEMK------SKMKAHTM-TDDVTFWKWISL-------NTVALVTDNAVYHWSMEGESQPV  136 (327)
T ss_dssp             SSSSEEEEEE-TTEEEEEETTTT------EEEEEEEC-SSCCCEEEESSS-------SEEEEECSSEEEEEESSSSCCCE
T ss_pred             CCCcEEEEec-CCeEEEEehhHh------hhhceEEc-CCCcEEEEecCC-------CEEEEEcCCceEEEcccCCCCch
Confidence            5566777666 568999999977      67776644 345767778777       58888888789999997666777


Q ss_pred             eeeCCCC----CCeEEEEEcCCCCEEEEEeC-------CCcEEEEEccc
Q 008363          271 WDIHPAP----KFIYGLDWLPDPGCVILSFD-------DGAMRIVSLLK  308 (568)
Q Consensus       271 ~~~~~h~----~~i~~l~~sp~~~~l~s~~~-------dg~I~lwd~~~  308 (568)
                      ..+..|.    ..|-.-..+++.++++..|-       .|.+.||....
T Consensus       137 k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er  185 (327)
T d1utca2         137 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR  185 (327)
T ss_dssp             EEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT
T ss_pred             hhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc
Confidence            7776553    45777778899998876532       46688888843

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.11  E-value=3.6  Score=36.26  Aligned_cols=155  Identities=10%  Similarity=0.004  Sum_probs=91.5

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-CC-EEE
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-GG-LKF  260 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~-v~l  260 (568)
                      .+++|.   .+.+..+-...+.|.+.++...      .....+.........|+++|..     ..++.+... .. |.-
T Consensus        82 lAvD~~---~~~lY~~d~~~~~I~v~~~~g~------~~~~~~~~~~~~P~~l~vd~~~-----g~ly~~~~~~~~~I~r  147 (266)
T d1ijqa1          82 LAVDWI---HSNIYWTDSVLGTVSVADTKGV------KRKTLFRENGSKPRAIVVDPVH-----GFMYWTDWGTPAKIKK  147 (266)
T ss_dssp             EEEETT---TTEEEEEETTTTEEEEEETTSS------SEEEEEECTTCCEEEEEEETTT-----TEEEEEECSSSCEEEE
T ss_pred             EEEeec---cceEEEEecCCCEEEeEecCCc------eEEEEEcCCCCCcceEEEEccc-----CeEEEeccCCCcceeE
Confidence            566665   4455666667789999998855      3344444556678999999865     145555432 33 666


Q ss_pred             EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEE
Q 008363          261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIW  339 (568)
Q Consensus       261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~  339 (568)
                      .++... .........-...+.|++.+.+..|+.+ ...+.|...++.         |...     ..+...........
T Consensus       148 ~~~dGs-~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~d---------G~~~-----~~~~~~~~~~~~p~  212 (266)
T d1ijqa1         148 GGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN---------GGNR-----KTILEDEKRLAHPF  212 (266)
T ss_dssp             EETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT---------SCSC-----EEEEECTTTTSSEE
T ss_pred             eccCCC-ceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECC---------CCCE-----EEEEeCCCcccccE
Confidence            676644 2222232333557899999988877776 447888888873         3211     11111111223456


Q ss_pred             EEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363          340 SVQVSRLTGMVAYCSADGTVHRFQLTAK  367 (568)
Q Consensus       340 ~l~~sp~~~~l~s~s~Dg~v~iwd~~~~  367 (568)
                      +|++. .+.+..+-..++.|...+..++
T Consensus       213 ~lav~-~~~ly~td~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         213 SLAVF-EDKVFWTDIINEAIFSANRLTG  239 (266)
T ss_dssp             EEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEE-CCEEEEEECCCCeEEEEECCCC
Confidence            67775 2344444446677877776554

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.76  E-value=3.7  Score=39.44  Aligned_cols=108  Identities=10%  Similarity=0.132  Sum_probs=61.1

Q ss_pred             ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee------CCCCCeeEEEEccCCCCCCCCcEEEEEc-
Q 008363          182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS------ADTLPIRAVSWAPAESDSDSANVILTAG-  254 (568)
Q Consensus       182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~------~h~~~V~~v~~~p~~~~~~~~~~las~s-  254 (568)
                      |++|+|.  |+|++|++-=..|.|++++..++..    ..+..+.      .-......|+|+|+-  ..+..++++.. 
T Consensus        29 P~~la~~--pdg~llVter~~G~i~~v~~~~g~~----~~i~~~~~~~~~~~ge~GLLgia~~Pdf--~~n~~iYvsyt~  100 (450)
T d1crua_          29 PHALLWG--PDNQIWLTERATGKILRVNPESGSV----KTVFQVPEIVNDADGQNGLLGFAFHPDF--KNNPYIYISGTF  100 (450)
T ss_dssp             EEEEEEC--TTSCEEEEETTTCEEEEECTTTCCE----EEEEECTTCCCCTTSSCSEEEEEECTTT--TTSCEEEEEEEE
T ss_pred             ceEEEEe--CCCeEEEEEecCCEEEEEECCCCcE----eecccCCccccccCCCCceeeEEeCCCC--ccCCEEEEEEec
Confidence            5899999  8887777765579999998766522    3333221      123567899999963  22334444422 


Q ss_pred             --------C--CC--EEEEECCCCCcc------e-eeeC-CCCCCeEEEEEcCCCCEEEEEeC
Q 008363          255 --------H--GG--LKFWDIRDPFRP------L-WDIH-PAPKFIYGLDWLPDPGCVILSFD  297 (568)
Q Consensus       255 --------~--d~--v~lwD~~~~~~~------~-~~~~-~h~~~i~~l~~sp~~~~l~s~~~  297 (568)
                              .  ..  |..+........      + ..+. ........|.|.|||.+.++.++
T Consensus       101 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         101 KNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             ECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence                    0  11  333333322111      1 1111 11123579999999987777664

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.82  E-value=6  Score=34.72  Aligned_cols=158  Identities=9%  Similarity=-0.024  Sum_probs=93.1

Q ss_pred             eEEEEccCCCCCEEEEE-eCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363          183 LTMEWSTSPPHDYLLAG-CHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF  260 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l  260 (568)
                      .+|+|.  +..+.|.-. ...+.|.-.++.....  .......+......+..|++.+.+     .+++.+-...+ |.+
T Consensus        33 ~~id~d--~~~~~lYw~D~~~~~I~~~~l~~~~~--~~~~~~~~~~~~~~p~glAvD~~~-----~~lY~~d~~~~~I~v  103 (266)
T d1ijqa1          33 VALDTE--VASNRIYWSDLSQRMICSTQLDRAHG--VSSYDTVISRDIQAPDGLAVDWIH-----SNIYWTDSVLGTVSV  103 (266)
T ss_dssp             EEEEEE--TTTTEEEEEETTTTEEEEEEC----------CEEEECSSCSCCCEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred             EEEEEE--eCCCEEEEEECCCCEEEEEEecCCCC--CcceEEEEeCCCCCcceEEEeecc-----ceEEEEecCCCEEEe
Confidence            678887  445555544 4566777666653211  011222233334557789998766     15566555556 999


Q ss_pred             EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEccccccCCCCCCCCccCccccceEEEe-cCCCC
Q 008363          261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD--DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN-CSSFA  337 (568)
Q Consensus       261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~--dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~-~h~~~  337 (568)
                      .++... .....+.........|+++|...+|+....  .+.|.-.++.         |...        ..+. ..-..
T Consensus       104 ~~~~g~-~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~d---------Gs~~--------~~l~~~~~~~  165 (266)
T d1ijqa1         104 ADTKGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN---------GVDI--------YSLVTENIQW  165 (266)
T ss_dssp             EETTSS-SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT---------SCCE--------EEEECSSCSC
T ss_pred             EecCCc-eEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccC---------CCce--------ecccccccce
Confidence            999866 333334344556789999997777776543  4456666652         3221        2332 23355


Q ss_pred             EEEEEEecCCCEEEEE-eCCCeEEEEEcCCC
Q 008363          338 IWSVQVSRLTGMVAYC-SADGTVHRFQLTAK  367 (568)
Q Consensus       338 V~~l~~sp~~~~l~s~-s~Dg~v~iwd~~~~  367 (568)
                      ..++++.+.+..|..+ ...+.|...++...
T Consensus       166 p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~  196 (266)
T d1ijqa1         166 PNGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (266)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             eeEEEeeccccEEEEecCCcCEEEEEECCCC
Confidence            6899999887666655 45678888888653

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=88.30  E-value=3.1  Score=38.33  Aligned_cols=157  Identities=11%  Similarity=0.046  Sum_probs=83.2

Q ss_pred             eEEEEccCCCCCEEEEEeC------------CCeEEEEEccCCCCCCCCceeEEeeCCC-----CCeeEEEE--ccCCCC
Q 008363          183 LTMEWSTSPPHDYLLAGCH------------DGTVALWKFVASDSSIDSRPLLCFSADT-----LPIRAVSW--APAESD  243 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~------------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-----~~V~~v~~--~p~~~~  243 (568)
                      -.+...  ++|..+++++.            .|.|.++|+.....  ....+ .+.+..     -....|..  .+++  
T Consensus        38 EDi~~~--~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~--~~~~l-~~~~~~~~~~~f~PhGi~l~~~~dg--  110 (340)
T d1v04a_          38 EDLEIL--PNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEP--AVSEL-EIIGNTLDISSFNPHGISTFIDDDN--  110 (340)
T ss_dssp             CEEEEC--TTSEEEEEECCCC--------CCCCEEEEEETTSSSC--CEEEC-EEECSSSCGGGCCEEEEEEEECTTC--
T ss_pred             ceEEEC--CCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCC--cceEE-EecCCCCCCcceeccceeEEEcCCC--
Confidence            345544  67766655432            48999999876522  01111 121111     12344443  3333  


Q ss_pred             CCCCcEEEEEcC---CC-EEEEECCCCCcce---eeeC-CCCCCeEEEEEcCCCCEEEEEe--C-C------------Cc
Q 008363          244 SDSANVILTAGH---GG-LKFWDIRDPFRPL---WDIH-PAPKFIYGLDWLPDPGCVILSF--D-D------------GA  300 (568)
Q Consensus       244 ~~~~~~las~s~---d~-v~lwD~~~~~~~~---~~~~-~h~~~i~~l~~sp~~~~l~s~~--~-d------------g~  300 (568)
                         ..+|+....   +. |.+|++......+   ..+. ......+.|++..++.++++-.  . +            ..
T Consensus       111 ---~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~  187 (340)
T d1v04a_         111 ---TVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAW  187 (340)
T ss_dssp             ---CEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCC
T ss_pred             ---cEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCc
Confidence               134544432   34 8888886543322   2222 2234468999999998777731  1 1            12


Q ss_pred             EEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEE-EeCCCeEEEEEcCC
Q 008363          301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAY-CSADGTVHRFQLTA  366 (568)
Q Consensus       301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s-~s~Dg~v~iwd~~~  366 (568)
                      .++|....        +.         .......-...+.|+++|++++|+. -+..+.|++|++..
T Consensus       188 g~v~~~~~--------~~---------~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~  237 (340)
T d1v04a_         188 SFVTYYSP--------ND---------VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  237 (340)
T ss_dssp             EEEEEECS--------SC---------EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             eeEEEEcC--------Cc---------eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCC
Confidence            33443311        11         1222222345689999999876654 45678899999864

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=86.48  E-value=12  Score=34.27  Aligned_cols=152  Identities=13%  Similarity=0.153  Sum_probs=89.4

Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEcc----CCCCCCCCcEEEEEcC--C---CEEEE
Q 008363          191 PPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAP----AESDSDSANVILTAGH--G---GLKFW  261 (568)
Q Consensus       191 ~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p----~~~~~~~~~~las~s~--d---~v~lw  261 (568)
                      |...+|+.....+-|.+||+. +      +.+..+.  .+.++.|..-.    .+    ....|+.++.  +   .|.+|
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G------~~l~~~~--~Gr~NNVDvr~~~~l~~----~~~di~vasnR~~~~~~l~~~  104 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-G------KMLHSYH--TGKLNNVDIRYDFPLNG----KKVDIAAASNRSEGKNTIEIY  104 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-C------CEEEECC--SSCEEEEEEEEEEEETT----EEEEEEEEEECCTTTCEEEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-C------cEEEecc--cCCcCccccccccccCC----cceEEEEEeCCcCcceeEEEE
Confidence            445577777777779999996 3      4555543  45677766542    11    0123444442  1   28888


Q ss_pred             ECCCCCcceeeeCCC-------CCCeEEEEE--cCC-CC-EEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363          262 DIRDPFRPLWDIHPA-------PKFIYGLDW--LPD-PG-CVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL  330 (568)
Q Consensus       262 D~~~~~~~~~~~~~h-------~~~i~~l~~--sp~-~~-~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~  330 (568)
                      .+......+..+...       ...++.+|+  +|. +. ++++...+|.+..|.+....     .|...    ...++.
T Consensus       105 ~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~-----~g~v~----~~lvr~  175 (353)
T d1h6la_         105 AIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADK-----NGYIS----GKKVRA  175 (353)
T ss_dssp             EEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECT-----TSSEE----EEEEEE
T ss_pred             EecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCC-----CCcee----eEeeec
Confidence            776432333333211       123566666  664 44 45566779999999874321     12211    133445


Q ss_pred             EecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363          331 VNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT  365 (568)
Q Consensus       331 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~  365 (568)
                      +. -...+-.+.+.+....|+.+-.+.-|+.+++.
T Consensus       176 f~-~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~  209 (353)
T d1h6la_         176 FK-MNSQTEGMAADDEYGSLYIAEEDEAIWKFSAE  209 (353)
T ss_dssp             EE-CSSCEEEEEEETTTTEEEEEETTTEEEEEESS
T ss_pred             cC-CCCccceEEEeCCCCcEEEecCccceEEEEec
Confidence            54 34568889999988999999888777666654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.18  E-value=10  Score=33.10  Aligned_cols=159  Identities=6%  Similarity=-0.015  Sum_probs=96.3

Q ss_pred             eEEEEccCCCCCEEE-EEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363          183 LTMEWSTSPPHDYLL-AGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF  260 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l  260 (568)
                      .+|+|.  ...+.|. +-..++.|...++...      .....+......+.+|++...+     .+++.+-...+ |.+
T Consensus        39 ~~ld~D--~~~~~iywsd~~~~~I~~~~l~g~------~~~~v~~~~~~~p~~iAvD~~~-----~~lY~~d~~~~~I~~  105 (263)
T d1npea_          39 IGLAFD--CVDKVVYWTDISEPSIGRASLHGG------EPTTIIRQDLGSPEGIALDHLG-----RTIFWTDSQLDRIEV  105 (263)
T ss_dssp             EEEEEE--TTTTEEEEEETTTTEEEEEESSSC------CCEEEECTTCCCEEEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred             EEEEEE--eCCCEEEEEECCCCeEEEEEcccC------CcEEEEEeccccccEEEEeccC-----CeEEEeccCCCEEEE
Confidence            667777  4444544 4456788888888755      3333343334568899998765     14555555556 999


Q ss_pred             EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCC-CcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEE
Q 008363          261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDD-GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIW  339 (568)
Q Consensus       261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d-g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~  339 (568)
                      .++.... ....+......+..|+++|...+|+..... +..+||-...       .|...     .  ......-....
T Consensus       106 ~~~dg~~-~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~-------dG~~~-----~--~i~~~~~~~P~  170 (263)
T d1npea_         106 AKMDGTQ-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM-------DGTNR-----R--ILAQDNLGLPN  170 (263)
T ss_dssp             EETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEET-------TSCCC-----E--EEECTTCSCEE
T ss_pred             EecCCce-EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecC-------CCCCc-----e--eeeeecccccc
Confidence            9998653 322333334567899999988888766432 3334553321       23221     0  12222234568


Q ss_pred             EEEEecCCCEEEEE-eCCCeEEEEEcCCCee
Q 008363          340 SVQVSRLTGMVAYC-SADGTVHRFQLTAKAV  369 (568)
Q Consensus       340 ~l~~sp~~~~l~s~-s~Dg~v~iwd~~~~~~  369 (568)
                      +|++.+.+..|..+ ...+.|...++.....
T Consensus       171 glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~  201 (263)
T d1npea_         171 GLTFDAFSSQLCWVDAGTHRAECLNPAQPGR  201 (263)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTEEEE
T ss_pred             eEEEeecCcEEEEEeCCCCEEEEEECCCCCe
Confidence            89999887766555 4677898888876543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=85.13  E-value=17  Score=35.70  Aligned_cols=48  Identities=17%  Similarity=0.322  Sum_probs=30.9

Q ss_pred             cEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCe-EEEEEcCCCC-EEEEEe
Q 008363          248 NVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFI-YGLDWLPDPG-CVILSF  296 (568)
Q Consensus       248 ~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i-~~l~~sp~~~-~l~s~~  296 (568)
                      .+++.|+.|+ ++.+|..++ +.++.+..-.+.. .-+.|..+|+ ||++.+
T Consensus       489 glVF~G~~dg~l~A~Da~TG-e~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~  539 (573)
T d1kb0a2         489 NVVFQGTADGRLVAYHAATG-EKLWEAPTGTGVVAAPSTYMVDGRQYVSVAV  539 (573)
T ss_dssp             TEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             CEEEEECCCCeEEEEECCCC-cEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence            5777888899 999999999 7777665321111 1245555775 554443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.45  E-value=16  Score=33.83  Aligned_cols=145  Identities=8%  Similarity=0.042  Sum_probs=83.1

Q ss_pred             eEEEEccCCCCCEEEEEeCCCeEEEEEccC-------CCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363          183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVA-------SDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH  255 (568)
Q Consensus       183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~-------~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~  255 (568)
                      .-++.+  +...+|++|+.++ +.|..+..       ........+...+    ..|..++|+.+        .|+....
T Consensus        40 ~LLAVs--n~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~i----p~v~~vafs~d--------~l~v~~~  104 (381)
T d1xipa_          40 QNLDIS--NSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEI----PDVIFVCFHGD--------QVLVSTR  104 (381)
T ss_dssp             BCEEEE--TTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEEC----TTEEEEEEETT--------EEEEEES
T ss_pred             ceEEEe--CCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCC----CCeEEEEeeCC--------EEEEEeC
Confidence            345555  5556888888775 56666421       1111112222222    35888999754        4554444


Q ss_pred             CCEEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCC
Q 008363          256 GGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS  335 (568)
Q Consensus       256 d~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~  335 (568)
                      +++..++.... ........-..++..+.++|.  .++....+|.+.++++.+        +....  -...+..+. -.
T Consensus       105 ~~l~~~~~~~l-~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~--------~~~~~--~~~~v~~~~-~~  170 (381)
T d1xipa_         105 NALYSLDLEEL-SEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRT--------KSTKQ--LAQNVTSFD-VT  170 (381)
T ss_dssp             SEEEEEESSST-TCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTT--------CCEEE--EEESEEEEE-EC
T ss_pred             CCEEEEEeecc-ccccccccccccccceecCCc--eeEEEecCCCEEEEEecc--------Ccccc--ccCCcceEE-ec
Confidence            45888888765 333333233456788888874  566777789999999854        21100  000111222 23


Q ss_pred             CCEEEEEEecCCCEEEEEeCC
Q 008363          336 FAIWSVQVSRLTGMVAYCSAD  356 (568)
Q Consensus       336 ~~V~~l~~sp~~~~l~s~s~D  356 (568)
                      +.+.+++|++.|..++++..+
T Consensus       171 ~~~~~v~ws~kgkq~v~~~g~  191 (381)
T d1xipa_         171 NSQLAVLLKDRSFQSFAWRNG  191 (381)
T ss_dssp             SSEEEEEETTSCEEEEEEETT
T ss_pred             CCceEEEEeCCcEEEEEeCCC
Confidence            567889999888888877533

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=83.85  E-value=3.4  Score=38.16  Aligned_cols=102  Identities=6%  Similarity=-0.063  Sum_probs=59.7

Q ss_pred             EEEEEcCCCCEEEEEeCCC-----------cEEEEEccccccCCCCCCCCccCccccceEEE-ecCCCCEEEEEEecCCC
Q 008363          281 YGLDWLPDPGCVILSFDDG-----------AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV-NCSSFAIWSVQVSRLTG  348 (568)
Q Consensus       281 ~~l~~sp~~~~l~s~~~dg-----------~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~-~~h~~~V~~l~~sp~~~  348 (568)
                      .......+|+.++.|+.+.           .+.+||...        +...      .+... ..|.......++.+++.
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t--------~~w~------~~~~~~~~~~~~~~~~~~~~~g~   88 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPST--------GIVS------DRTVTVTKHDMFCPGISMDGNGQ   88 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTT--------CCBC------CCEEEECSCCCSSCEEEECTTSC
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCC--------CcEe------ecCCCCCCcccceeEEEEecCCc
Confidence            3344456788888877421           267899843        3321      11111 22322234567889999


Q ss_pred             EEEEEeCC-CeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEc
Q 008363          349 MVAYCSAD-GTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVN  396 (568)
Q Consensus       349 ~l~s~s~D-g~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~  396 (568)
                      +++.|+.+ ..+.+||..+..................++..++..+.++
T Consensus        89 i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~G  137 (387)
T d1k3ia3          89 IVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIG  137 (387)
T ss_dssp             EEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEEC
T ss_pred             EEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeec
Confidence            99988766 5899999998887665333222222233445566666664

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.48  E-value=28  Score=34.02  Aligned_cols=47  Identities=19%  Similarity=0.453  Sum_probs=32.0

Q ss_pred             cEEEEEcCCC-EEEEECCCCCcceeeeCCCCCC-eEEEEEcCCCC-EEEEE
Q 008363          248 NVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKF-IYGLDWLPDPG-CVILS  295 (568)
Q Consensus       248 ~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~-i~~l~~sp~~~-~l~s~  295 (568)
                      .+++.|+.|+ ++.+|..++ +.++.+..-... -.-+.|..+|+ ||++.
T Consensus       498 glVF~Gt~dg~l~A~Da~TG-e~LW~~~~~~~~~~~P~ty~~~G~qYv~i~  547 (582)
T d1flga_         498 NLVFTGTGDGYFKAFDAKSG-KELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             TEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             CeEEEeCCCCeEEEEECCCC-cEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence            5777789899 999999999 788766522111 12356777885 55544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=80.26  E-value=29  Score=33.92  Aligned_cols=58  Identities=16%  Similarity=0.050  Sum_probs=36.7

Q ss_pred             ceEEEeeccCCceeeEEEEccCCCCccccc------------CcccEEEEEeCCCcEEEEECCCCceeeE
Q 008363           90 PRVVLCLAHNGKVAWDVKWKPYNAVDCKCK------------QRLGYLAVLLGNGSLEVWEVPLLRTMKA  147 (568)
Q Consensus        90 p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~------------~~~~~las~s~dg~V~iwd~~~~~~~~~  147 (568)
                      ..++.....++..+|.....+..-|+....            .....++.++.+|.+.++|..+++.+..
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~  341 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA  341 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeee
Confidence            345555566676776666555443322111            1113677888999999999999988754