Citrus Sinensis ID: 008423

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560------
MAWRTCSSGWTAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKSALAILLNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFAVFADL
ccHHHHHHHHHHHccccccEEEEcccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccHHHHHHHHHHHccccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHccccEEEHHHccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccEEEcccccccccccccccccccccccEEEEEcEEEEEccHHHHHHHHHHHcccccEEEEEEEcccccccccccccccEEEEcccccccccccccccccHHHcHHHHHHHHHHHHHHcccccccHHHHHHHHHHccEEEEEEEccccccccHHHHHHcc
cccccHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHccccEEEEEccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHcccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHccccccccccccccccccccccccccccEEEEccccccEEEEccccccccccccccccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccEEEcccccccccccccccEcccccccEEEEEEEEEEEccHHHHHHHHHHHcccccEEEEEEEccccEEcccccccccEEEEEEccccEEEEcEEEcHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccEEEEEEEccccccccHHHHHHcc
mawrtcssgwtawwpttrhsatsrwgaggstaDLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVlalrgdpphgqdkFVQIQGGFACALDLVKHIRSAYgdyfgitvagypeghpdtigpdgvasnesyQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRqigitcpivpgimpinnykgflrmtgfcktkipAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKSALAILLNLGLieeskisrslpwrpptnvfrvkedvrpifwanrpksylsrtvgwdqyprgrwgdsrnpsygalsdhqfmrprsrdkklheewavplKSVEDIYEKFKNYclgklrsspwseldglqpetKIINEQLgkinvkgfltinsqpavngersdsssvgwggpggyVYQKAYLEFFCSPEKLTALvdkskalpfITFMAVNkegnwkanvnqtdvnavtwgvfpakeiiqptvvdpasfkvwKDEAFEIWSRSwaslypegdssrKLLEEVQSSYYLVSLvdndyingDLFAVFADL
mawrtcssgwtawwpttrhsatsrwgaggSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAalepikdnEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKSALAILLNLGLIEEskisrslpwrpptnvfrvkedvrpifwanrpksylsrtvgwdqyprgrwgdsrnpsygalsdhqfmrprsrdkklhEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSqpavngersdsssvgwGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFAVFADL
MAWRTCSSGWTAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKSALAILLNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFAVFADL
**WRTCSSGWTAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIG********SYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKSALAILLNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRW***************************EEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTIN**************VGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFAVFA**
MAWRTCSSGWTAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKSALAILLNLGL*******************************************WDQYPRGRWGDSRNPSYGALSDHQFMRP**********WAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFAVFADL
********GWTAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKSALAILLNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPA**********VGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFAVFADL
*AWRTCSSGWTAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKSALAILLNLGLIEESKISRSLPWRPP*NVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFAVFADL
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MAWRTCSSGWTAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKSALAILLNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGRWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFAVFADL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query566 2.2.26 [Sep-21-2011]
O80585594 Methylenetetrahydrofolate yes no 0.957 0.912 0.835 0.0
Q75HE6594 Probable methylenetetrahy yes no 0.957 0.912 0.837 0.0
Q9SE60592 Methylenetetrahydrofolate no no 0.954 0.912 0.812 0.0
Q9SE94593 Methylenetetrahydrofolate N/A no 0.952 0.908 0.820 0.0
P42898656 Methylenetetrahydrofolate yes no 0.927 0.800 0.443 1e-131
Q60HE5656 Methylenetetrahydrofolate N/A no 0.927 0.800 0.441 1e-129
Q5I598655 Methylenetetrahydrofolate yes no 0.925 0.8 0.431 1e-129
Q9WU20654 Methylenetetrahydrofolate yes no 0.927 0.802 0.429 1e-128
Q10258603 Methylenetetrahydrofolate yes no 0.920 0.864 0.442 1e-124
P53128600 Methylenetetrahydrofolate yes no 0.925 0.873 0.428 1e-120
>sp|O80585|MTHR2_ARATH Methylenetetrahydrofolate reductase 2 OS=Arabidopsis thaliana GN=MTHFR2 PE=1 SV=2 Back     alignment and function desciption
 Score =  975 bits (2520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/542 (83%), Positives = 497/542 (91%)

Query: 25  WGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRG 84
           WGAGGSTADLTLDIA+RMQN +CVE+MMHLTCTNMPVEKIDHAL+TI+SNGIQNVLALRG
Sbjct: 53  WGAGGSTADLTLDIASRMQNVVCVESMMHLTCTNMPVEKIDHALETIRSNGIQNVLALRG 112

Query: 85  DPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESY 144
           DPPHGQDKFVQ++GGF CALDLV HIRS YGDYFGITVAGYPE HPD IG +G+ASNE+Y
Sbjct: 113 DPPHGQDKFVQVEGGFDCALDLVNHIRSKYGDYFGITVAGYPEAHPDVIGENGLASNEAY 172

Query: 145 QSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLR 204
           QSDL YLKKK+DAGADLI+TQLFYDTD+FLKFVNDCRQIGI+CPIVPGIMPINNY+GFLR
Sbjct: 173 QSDLEYLKKKIDAGADLIVTQLFYDTDIFLKFVNDCRQIGISCPIVPGIMPINNYRGFLR 232

Query: 205 MTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKS 264
           MTGFCKTKIP E+ AALEPIKDNEEAVKAYGIHLG EMCKK+LAHG+K+LHLYTLNMEKS
Sbjct: 233 MTGFCKTKIPVEVMAALEPIKDNEEAVKAYGIHLGTEMCKKMLAHGVKSLHLYTLNMEKS 292

Query: 265 ALAILLNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRG 324
           ALAIL+NLG+I+ESKISRSLPWR P NVFR KEDVRPIFWANRPKSY+SRT GW+ +P+G
Sbjct: 293 ALAILMNLGMIDESKISRSLPWRRPANVFRTKEDVRPIFWANRPKSYISRTKGWEDFPQG 352

Query: 325 RWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWS 384
           RWGDSR+ SYGALSDHQF RPR+RDKKL +EW VPLKSVEDI EKFK  CLG L+SSPWS
Sbjct: 353 RWGDSRSASYGALSDHQFSRPRARDKKLQQEWVVPLKSVEDIQEKFKELCLGNLKSSPWS 412

Query: 385 ELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEF 444
           ELDGLQPET+IINEQL K+N KGFLTINSQP+VN ERSDS +VGWGGP GYVYQKAYLEF
Sbjct: 413 ELDGLQPETRIINEQLIKVNSKGFLTINSQPSVNAERSDSPTVGWGGPVGYVYQKAYLEF 472

Query: 445 FCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVD 504
           FCS EKL A+V+K KALP IT+MAVNK   W +N  Q DVNAVTWGVFPAKEIIQPT+VD
Sbjct: 473 FCSKEKLDAVVEKCKALPSITYMAVNKGEQWVSNTAQADVNAVTWGVFPAKEIIQPTIVD 532

Query: 505 PASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFAVFA 564
           PASF VWKDEAFE WSRSWA+LYPE D SR LLEEV++SYYLVSLV+NDYINGD+FAVFA
Sbjct: 533 PASFNVWKDEAFETWSRSWANLYPEADPSRNLLEEVKNSYYLVSLVENDYINGDIFAVFA 592

Query: 565 DL 566
           DL
Sbjct: 593 DL 594
The probable reversibility of the MTHFR reaction in plants suggests that they can metabolize the methyl group of 5,10-methylenetetrahydrofolate to serine, sugars and starch.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 5EC: .EC: 1EC: .EC: 2EC: 0
>sp|Q75HE6|MTHR_ORYSJ Probable methylenetetrahydrofolate reductase OS=Oryza sativa subsp. japonica GN=Os03g0815200 PE=2 SV=1 Back     alignment and function description
>sp|Q9SE60|MTHR1_ARATH Methylenetetrahydrofolate reductase 1 OS=Arabidopsis thaliana GN=MTHFR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SE94|MTHR1_MAIZE Methylenetetrahydrofolate reductase 1 OS=Zea mays PE=2 SV=1 Back     alignment and function description
>sp|P42898|MTHR_HUMAN Methylenetetrahydrofolate reductase OS=Homo sapiens GN=MTHFR PE=1 SV=3 Back     alignment and function description
>sp|Q60HE5|MTHR_MACFA Methylenetetrahydrofolate reductase OS=Macaca fascicularis GN=MTHFR PE=2 SV=1 Back     alignment and function description
>sp|Q5I598|MTHR_BOVIN Methylenetetrahydrofolate reductase OS=Bos taurus GN=MTHFR PE=2 SV=1 Back     alignment and function description
>sp|Q9WU20|MTHR_MOUSE Methylenetetrahydrofolate reductase OS=Mus musculus GN=Mthfr PE=2 SV=2 Back     alignment and function description
>sp|Q10258|MTHR1_SCHPO Methylenetetrahydrofolate reductase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=met9 PE=1 SV=1 Back     alignment and function description
>sp|P53128|MTHR2_YEAST Methylenetetrahydrofolate reductase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MET13 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query566
224095250608 methylenetetrahydrofolate reductase [Pop 0.957 0.891 0.880 0.0
224117802606 methylenetetrahydrofolate reductase [Pop 0.957 0.894 0.880 0.0
255576667609 methylenetetrahydrofolate reductase, put 0.957 0.889 0.869 0.0
449442401596 PREDICTED: methylenetetrahydrofolate red 0.957 0.909 0.861 0.0
356517828595 PREDICTED: methylenetetrahydrofolate red 0.957 0.910 0.854 0.0
356509485595 PREDICTED: methylenetetrahydrofolate red 0.957 0.910 0.854 0.0
342722655595 methylenetetrahydrofolate reductase [Nic 0.957 0.910 0.845 0.0
342722663595 methylenetetrahydrofolate reductase [Nic 0.957 0.910 0.845 0.0
342722657595 methylenetetrahydrofolate reductase [Nic 0.957 0.910 0.846 0.0
342722653595 methylenetetrahydrofolate reductase [Nic 0.957 0.910 0.846 0.0
>gi|224095250|ref|XP_002310366.1| methylenetetrahydrofolate reductase [Populus trichocarpa] gi|222853269|gb|EEE90816.1| methylenetetrahydrofolate reductase [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1014 bits (2622), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/542 (88%), Positives = 508/542 (93%)

Query: 25  WGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRG 84
           WGAGGSTADLTLDIAN+MQN ICVETMMHLTCTNMPVEKIDHAL+TIKSNGIQNVLALRG
Sbjct: 67  WGAGGSTADLTLDIANKMQNIICVETMMHLTCTNMPVEKIDHALETIKSNGIQNVLALRG 126

Query: 85  DPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESY 144
           DPPHGQDKFVQIQGGFACALDLVKHIRS YGDYFGITVAGYPE HPD IG DG A+ E Y
Sbjct: 127 DPPHGQDKFVQIQGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDAIGSDGFATPEDY 186

Query: 145 QSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLR 204
           Q DL YLK+KVDAGADLI+TQLFYDTD+FLKFVNDCRQIGITCPIVPGIMPINNYKGFLR
Sbjct: 187 QKDLAYLKQKVDAGADLIVTQLFYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFLR 246

Query: 205 MTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKS 264
           MTGFCKTKIPAE+TAALEPIKDNEEAV+AYGIHLG EMCKKILAHGIKTLHLYTLNMEKS
Sbjct: 247 MTGFCKTKIPAEVTAALEPIKDNEEAVRAYGIHLGTEMCKKILAHGIKTLHLYTLNMEKS 306

Query: 265 ALAILLNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRG 324
           ALAIL+NLGLIEESKI+R+LPWRPPTNVFR KEDVRPIFWANRPKSYLSRT+GWDQYP G
Sbjct: 307 ALAILMNLGLIEESKITRALPWRPPTNVFRAKEDVRPIFWANRPKSYLSRTIGWDQYPHG 366

Query: 325 RWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWS 384
           RWGDS NPSYGALSD+QFMRPR+R KKL EEWA PLKSVEDIYEKFK YCLGKL+SSPWS
Sbjct: 367 RWGDSHNPSYGALSDYQFMRPRARGKKLFEEWASPLKSVEDIYEKFKVYCLGKLKSSPWS 426

Query: 385 ELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEF 444
           EL+GLQPETKIINEQLG+IN+KGFLTINSQPAVN E+SDS SVGWGGPGGYVYQKAYLEF
Sbjct: 427 ELEGLQPETKIINEQLGRINLKGFLTINSQPAVNAEKSDSPSVGWGGPGGYVYQKAYLEF 486

Query: 445 FCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVD 504
           FCS EKL ALV++ KA P +T+MAVN+ G+W +NV  TDVNAVTWGVFPAKEIIQPTVVD
Sbjct: 487 FCSKEKLNALVERCKAFPLVTYMAVNRGGSWISNVALTDVNAVTWGVFPAKEIIQPTVVD 546

Query: 505 PASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFAVFA 564
           P SF VWKDEAFEIWSR WASLYPEGD SR LLEEVQ+SY+LVSLVDNDYI+GD+FAVFA
Sbjct: 547 PTSFSVWKDEAFEIWSRGWASLYPEGDPSRTLLEEVQNSYFLVSLVDNDYIHGDIFAVFA 606

Query: 565 DL 566
           +L
Sbjct: 607 EL 608

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224117802|ref|XP_002331635.1| methylenetetrahydrofolate reductase [Populus trichocarpa] gi|222874031|gb|EEF11162.1| methylenetetrahydrofolate reductase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255576667|ref|XP_002529223.1| methylenetetrahydrofolate reductase, putative [Ricinus communis] gi|223531341|gb|EEF33179.1| methylenetetrahydrofolate reductase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449442401|ref|XP_004138970.1| PREDICTED: methylenetetrahydrofolate reductase 2-like [Cucumis sativus] gi|449523165|ref|XP_004168595.1| PREDICTED: methylenetetrahydrofolate reductase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356517828|ref|XP_003527588.1| PREDICTED: methylenetetrahydrofolate reductase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356509485|ref|XP_003523478.1| PREDICTED: methylenetetrahydrofolate reductase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|342722655|gb|AEL33268.1| methylenetetrahydrofolate reductase [Nicotiana tabacum] gi|342722659|gb|AEL33270.1| methylenetetrahydrofolate reductase [Nicotiana tomentosiformis] Back     alignment and taxonomy information
>gi|342722663|gb|AEL33272.1| methylenetetrahydrofolate reductase [Nicotiana tomentosiformis] Back     alignment and taxonomy information
>gi|342722657|gb|AEL33269.1| methylenetetrahydrofolate reductase [Nicotiana sylvestris] Back     alignment and taxonomy information
>gi|342722653|gb|AEL33267.1| methylenetetrahydrofolate reductase [Nicotiana tabacum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query566
TAIR|locus:2051789594 MTHFR2 "methylenetetrahydrofol 0.957 0.912 0.835 5.6e-258
TAIR|locus:2080477592 MTHFR1 "methylenetetrahydrofol 0.954 0.912 0.812 8.7e-253
DICTYBASE|DDB_G0279137627 DDB_G0279137 "methylenetetrahy 0.934 0.843 0.517 2.3e-151
ZFIN|ZDB-GENE-041111-215656 mthfr "methylenetetrahydrofola 0.932 0.804 0.469 1.9e-131
ASPGD|ASPL0000001289627 metF [Emericella nidulans (tax 0.932 0.842 0.447 8.9e-125
UNIPROTKB|P42898656 MTHFR "Methylenetetrahydrofola 0.931 0.803 0.448 6.3e-124
UNIPROTKB|Q5SNW6697 MTHFR "Methylenetetrahydrofola 0.931 0.756 0.448 6.3e-124
UNIPROTKB|F1RF82700 MTHFR "Methylenetetrahydrofola 0.929 0.751 0.440 3.5e-123
UNIPROTKB|F1MF22655 MTHFR "Methylenetetrahydrofola 0.929 0.803 0.438 1.9e-122
UNIPROTKB|D4A7E8695 Mthfr "Methylenetetrahydrofola 0.931 0.758 0.435 5.1e-122
TAIR|locus:2051789 MTHFR2 "methylenetetrahydrofolate reductase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2483 (879.1 bits), Expect = 5.6e-258, P = 5.6e-258
 Identities = 453/542 (83%), Positives = 497/542 (91%)

Query:    25 WGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRG 84
             WGAGGSTADLTLDIA+RMQN +CVE+MMHLTCTNMPVEKIDHAL+TI+SNGIQNVLALRG
Sbjct:    53 WGAGGSTADLTLDIASRMQNVVCVESMMHLTCTNMPVEKIDHALETIRSNGIQNVLALRG 112

Query:    85 DPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESY 144
             DPPHGQDKFVQ++GGF CALDLV HIRS YGDYFGITVAGYPE HPD IG +G+ASNE+Y
Sbjct:   113 DPPHGQDKFVQVEGGFDCALDLVNHIRSKYGDYFGITVAGYPEAHPDVIGENGLASNEAY 172

Query:   145 QSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLR 204
             QSDL YLKKK+DAGADLI+TQLFYDTD+FLKFVNDCRQIGI+CPIVPGIMPINNY+GFLR
Sbjct:   173 QSDLEYLKKKIDAGADLIVTQLFYDTDIFLKFVNDCRQIGISCPIVPGIMPINNYRGFLR 232

Query:   205 MTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKS 264
             MTGFCKTKIP E+ AALEPIKDNEEAVKAYGIHLG EMCKK+LAHG+K+LHLYTLNMEKS
Sbjct:   233 MTGFCKTKIPVEVMAALEPIKDNEEAVKAYGIHLGTEMCKKMLAHGVKSLHLYTLNMEKS 292

Query:   265 ALAILLNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRG 324
             ALAIL+NLG+I+ESKISRSLPWR P NVFR KEDVRPIFWANRPKSY+SRT GW+ +P+G
Sbjct:   293 ALAILMNLGMIDESKISRSLPWRRPANVFRTKEDVRPIFWANRPKSYISRTKGWEDFPQG 352

Query:   325 RWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWS 384
             RWGDSR+ SYGALSDHQF RPR+RDKKL +EW VPLKSVEDI EKFK  CLG L+SSPWS
Sbjct:   353 RWGDSRSASYGALSDHQFSRPRARDKKLQQEWVVPLKSVEDIQEKFKELCLGNLKSSPWS 412

Query:   385 ELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEF 444
             ELDGLQPET+IINEQL K+N KGFLTINSQP+VN ERSDS +VGWGGP GYVYQKAYLEF
Sbjct:   413 ELDGLQPETRIINEQLIKVNSKGFLTINSQPSVNAERSDSPTVGWGGPVGYVYQKAYLEF 472

Query:   445 FCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVD 504
             FCS EKL A+V+K KALP IT+MAVNK   W +N  Q DVNAVTWGVFPAKEIIQPT+VD
Sbjct:   473 FCSKEKLDAVVEKCKALPSITYMAVNKGEQWVSNTAQADVNAVTWGVFPAKEIIQPTIVD 532

Query:   505 PASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGDLFAVFA 564
             PASF VWKDEAFE WSRSWA+LYPE D SR LLEEV++SYYLVSLV+NDYINGD+FAVFA
Sbjct:   533 PASFNVWKDEAFETWSRSWANLYPEADPSRNLLEEVKNSYYLVSLVENDYINGDIFAVFA 592

Query:   565 DL 566
             DL
Sbjct:   593 DL 594
GO:0004489 "methylenetetrahydrofolate reductase (NADPH) activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006555 "methionine metabolic process" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2080477 MTHFR1 "methylenetetrahydrofolate reductase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279137 DDB_G0279137 "methylenetetrahydrofolate reductase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041111-215 mthfr "methylenetetrahydrofolate reductase (NAD(P)H)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ASPGD|ASPL0000001289 metF [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|P42898 MTHFR "Methylenetetrahydrofolate reductase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5SNW6 MTHFR "Methylenetetrahydrofolate reductase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RF82 MTHFR "Methylenetetrahydrofolate reductase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MF22 MTHFR "Methylenetetrahydrofolate reductase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|D4A7E8 Mthfr "Methylenetetrahydrofolate reductase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P42898MTHR_HUMAN1, ., 5, ., 1, ., 2, 00.44360.92750.8003yesno
Q9SE60MTHR1_ARATH1, ., 5, ., 1, ., 2, 00.81290.95400.9121nono
P53128MTHR2_YEAST1, ., 5, ., 1, ., 2, 00.42850.92570.8733yesno
Q9SE94MTHR1_MAIZE1, ., 5, ., 1, ., 2, 00.82000.95220.9089N/Ano
Q9WU20MTHR_MOUSE1, ., 5, ., 1, ., 2, 00.42900.92750.8027yesno
O80585MTHR2_ARATH1, ., 5, ., 1, ., 2, 00.83570.95750.9124yesno
Q10258MTHR1_SCHPO1, ., 5, ., 1, ., 2, 00.44260.92040.8640yesno
Q75HE6MTHR_ORYSJ1, ., 5, ., 1, ., 2, 00.83760.95750.9124yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.5.10.983
4th Layer1.5.1.200.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
MTHFR1
methylenetetrahydrofolate reductase (EC-1.5.1.20) (608 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gdcT1
precursor of carboxylase t-protein 1, glycine decarboxylase complex (EC-2.1.2.10); The glycine [...] (409 aa)
•    •• 0.930
gdcT2
RecName- Full=Aminomethyltransferase; EC=2.1.2.10;; The glycine cleavage system catalyzes the d [...] (409 aa)
•    •• 0.929
SHMT6
RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (472 aa)
     •• 0.913
SHMT3
precursor of transferase serine hydroxymethyltransferase 3 (EC-2.1.2.1); Interconversion of ser [...] (516 aa)
     •• 0.912
SHMT2
precursor of transferase serine hydroxymethyltransferase 2 (EC-2.1.2.1); Interconversion of ser [...] (518 aa)
     •• 0.911
SHMT7
precursor of transferase serine hydroxymethyltransferase 7 (EC-2.1.2.1); Interconversion of ser [...] (521 aa)
     •• 0.911
SHMT8
serine hydroxymethyltransferase 8 (EC-2.1.2.1); Interconversion of serine and glycine (By simil [...] (530 aa)
     •• 0.911
SHMT1
RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (472 aa)
     •• 0.909
DHFR-TS-2
dihydrofolate reductase-thymidylate synthase (EC-1.5.1.3 2.1.1.45) (414 aa)
     •• 0.906
SHMT5
serine hydroxymethyltransferase 5 (EC-2.1.2.1); Interconversion of serine and glycine (By simil [...] (552 aa)
     •• 0.905

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query566
PLN02540565 PLN02540, PLN02540, methylenetetrahydrofolate redu 0.0
TIGR00677281 TIGR00677, fadh2_euk, methylenetetrahydrofolate re 1e-166
pfam02219286 pfam02219, MTHFR, Methylenetetrahydrofolate reduct 1e-132
cd00537274 cd00537, MTHFR, Methylenetetrahydrofolate reductas 1e-104
TIGR00676272 TIGR00676, fadh2, 5,10-methylenetetrahydrofolate r 3e-86
COG0685291 COG0685, MetF, 5,10-methylenetetrahydrofolate redu 3e-69
PRK09432296 PRK09432, metF, 5,10-methylenetetrahydrofolate red 2e-47
PRK08645612 PRK08645, PRK08645, bifunctional homocysteine S-me 9e-16
>gnl|CDD|215296 PLN02540, PLN02540, methylenetetrahydrofolate reductase Back     alignment and domain information 
 Score = 1130 bits (2926), Expect = 0.0
 Identities = 462/530 (87%), Positives = 492/530 (92%)

Query: 25  WGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRG 84
           WGAGGSTADLTLDIANRMQN ICVETMMHLTCTNMPVEKIDHAL+TIKSNGIQN+LALRG
Sbjct: 36  WGAGGSTADLTLDIANRMQNMICVETMMHLTCTNMPVEKIDHALETIKSNGIQNILALRG 95

Query: 85  DPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESY 144
           DPPHGQDKFVQ++GGFACALDLVKHIRS YGDYFGITVAGYPE HPD IG DG+A+ E+Y
Sbjct: 96  DPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAY 155

Query: 145 QSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLR 204
           Q DL YLK+KVDAGADLIITQLFYDTD+FLKFVNDCRQIGITCPIVPGIMPINNYKGFLR
Sbjct: 156 QKDLAYLKEKVDAGADLIITQLFYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFLR 215

Query: 205 MTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKS 264
           MTGFCKTKIPAEITAALEPIKDN+EAVKAYGIHLG EMCKKILAHGIK LHLYTLN+EKS
Sbjct: 216 MTGFCKTKIPAEITAALEPIKDNDEAVKAYGIHLGTEMCKKILAHGIKGLHLYTLNLEKS 275

Query: 265 ALAILLNLGLIEESKISRSLPWRPPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRG 324
           ALAIL+NLGLI+ESK+SR LPWRPPTNVFR KEDVRPIFWANRPKSY+SRT GWDQYP G
Sbjct: 276 ALAILMNLGLIDESKVSRPLPWRPPTNVFRTKEDVRPIFWANRPKSYISRTTGWDQYPHG 335

Query: 325 RWGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWS 384
           RWGDSR+P+YGALSDHQFMRPR+RDKKL  EW VPLKSVED+YE F  YCLGKL+SSPWS
Sbjct: 336 RWGDSRSPAYGALSDHQFMRPRARDKKLQAEWGVPLKSVEDVYEVFAKYCLGKLKSSPWS 395

Query: 385 ELDGLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEF 444
           ELDGLQPETKIINEQL KIN KGFLTINSQPAVNGE+SDS SVGWGGPGGYVYQKAYLEF
Sbjct: 396 ELDGLQPETKIINEQLVKINRKGFLTINSQPAVNGEKSDSPSVGWGGPGGYVYQKAYLEF 455

Query: 445 FCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVD 504
           FCSPEKL ALV+K KA P +T++AVNK G W +NV   DVNAVTWGVFPAKEIIQPTVVD
Sbjct: 456 FCSPEKLDALVEKCKAFPSLTYIAVNKAGEWISNVGPGDVNAVTWGVFPAKEIIQPTVVD 515

Query: 505 PASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDY 554
           PASF VWKDEAFE+WS  WA+LYPEGD SRKLLEE++ SYYLVSLVDNDY
Sbjct: 516 PASFMVWKDEAFELWSSEWANLYPEGDPSRKLLEEIKDSYYLVSLVDNDY 565

Length = 565
>gnl|CDD|129760 TIGR00677, fadh2_euk, methylenetetrahydrofolate reductase, eukaryotic type Back     alignment and domain information
>gnl|CDD|216933 pfam02219, MTHFR, Methylenetetrahydrofolate reductase Back     alignment and domain information
>gnl|CDD|238299 cd00537, MTHFR, Methylenetetrahydrofolate reductase (MTHFR) Back     alignment and domain information
>gnl|CDD|233086 TIGR00676, fadh2, 5,10-methylenetetrahydrofolate reductase, prokaryotic form Back     alignment and domain information
>gnl|CDD|223757 COG0685, MetF, 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|181852 PRK09432, metF, 5,10-methylenetetrahydrofolate reductase; Provisional Back     alignment and domain information
>gnl|CDD|236321 PRK08645, PRK08645, bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 566
KOG0564590 consensus 5,10-methylenetetrahydrofolate reductase 100.0
PLN02540565 methylenetetrahydrofolate reductase 100.0
TIGR00677281 fadh2_euk methylenetetrahydrofolate reductase, euk 100.0
TIGR00676272 fadh2 5,10-methylenetetrahydrofolate reductase, pr 100.0
PRK09432296 metF 5,10-methylenetetrahydrofolate reductase; Pro 100.0
PF02219287 MTHFR: Methylenetetrahydrofolate reductase; InterP 100.0
cd00537274 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 100.0
COG0685291 MetF 5,10-methylenetetrahydrofolate reductase [Ami 100.0
PRK08645612 bifunctional homocysteine S-methyltransferase/5,10 100.0
PF01081196 Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 97.09
PRK06015201 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 96.89
PRK07114222 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 96.78
TIGR01182204 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho 96.76
PRK06552213 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 96.67
COG0159265 TrpA Tryptophan synthase alpha chain [Amino acid t 96.56
TIGR00262256 trpA tryptophan synthase, alpha subunit. Tryptopha 96.51
PRK05718212 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 95.95
PRK09140206 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R 95.89
PLN02591250 tryptophan synthase 95.21
COG0800211 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca 95.2
CHL00200263 trpA tryptophan synthase alpha subunit; Provisiona 94.95
PF00290259 Trp_syntA: Tryptophan synthase alpha chain; InterP 94.83
cd00945201 Aldolase_Class_I Class I aldolases. The class I al 94.73
COG1060370 ThiH Thiamine biosynthesis enzyme ThiH and related 94.03
cd04724242 Tryptophan_synthase_alpha Ttryptophan synthase (TR 93.44
PRK05481289 lipoyl synthase; Provisional 93.32
PRK13111258 trpA tryptophan synthase subunit alpha; Provisiona 92.88
cd00452190 KDPG_aldolase KDPG and KHG aldolase. This family b 92.33
cd02803327 OYE_like_FMN_family Old yellow enzyme (OYE)-like F 92.17
PRK07360371 FO synthase subunit 2; Reviewed 91.71
PRK13125244 trpA tryptophan synthase subunit alpha; Provisiona 91.51
PRK05927350 hypothetical protein; Provisional 91.36
cd02930353 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin 91.23
TIGR03551343 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav 90.82
PRK13111258 trpA tryptophan synthase subunit alpha; Provisiona 90.55
cd04733338 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN 90.35
PRK09240371 thiH thiamine biosynthesis protein ThiH; Reviewed 90.27
PF00701289 DHDPS: Dihydrodipicolinate synthetase family; Inte 90.2
cd00377243 ICL_PEPM Members of the ICL/PEPM enzyme family cat 89.99
cd04724242 Tryptophan_synthase_alpha Ttryptophan synthase (TR 89.85
PRK07094323 biotin synthase; Provisional 89.54
CHL00200263 trpA tryptophan synthase alpha subunit; Provisiona 89.53
cd04727283 pdxS PdxS is a subunit of the pyridoxal 5'-phospha 89.47
PLN02591250 tryptophan synthase 89.07
TIGR02351366 thiH thiazole biosynthesis protein ThiH. Members t 89.04
PRK12928290 lipoyl synthase; Provisional 88.58
PF11965164 DUF3479: Domain of unknown function (DUF3479); Int 87.9
TIGR00510302 lipA lipoate synthase. The family shows strong seq 87.88
TIGR00423309 radical SAM domain protein, CofH subfamily. This p 87.83
TIGR03700351 mena_SCO4494 putative menaquinone biosynthesis pro 87.66
TIGR01163210 rpe ribulose-phosphate 3-epimerase. This family co 87.61
TIGR01163210 rpe ribulose-phosphate 3-epimerase. This family co 87.61
cd00953279 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas 86.97
TIGR03249296 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh 86.8
PTZ00314495 inosine-5'-monophosphate dehydrogenase; Provisiona 86.57
cd00408281 DHDPS-like Dihydrodipicolinate synthase family. A 86.48
TIGR00262256 trpA tryptophan synthase, alpha subunit. Tryptopha 86.47
cd00950284 DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke 86.43
PRK08508279 biotin synthase; Provisional 86.32
cd00952309 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate 85.93
TIGR03128206 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the 85.77
PRK05904353 coproporphyrinogen III oxidase; Provisional 85.17
cd02810289 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) 85.0
COG1856275 Uncharacterized homolog of biotin synthetase [Func 84.93
PRK07259301 dihydroorotate dehydrogenase 1B; Reviewed 84.9
cd04740296 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c 84.81
TIGR00343287 pyridoxal 5'-phosphate synthase, synthase subunit 84.61
cd02932336 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN 84.55
cd06360336 PBP1_alkylbenzenes_like Type I periplasmic binding 84.44
PRK03170292 dihydrodipicolinate synthase; Provisional 84.41
PRK08445348 hypothetical protein; Provisional 84.14
PRK06245336 cofG FO synthase subunit 1; Reviewed 84.07
PRK05286344 dihydroorotate dehydrogenase 2; Reviewed 83.75
cd04734343 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN 83.4
PRK08444353 hypothetical protein; Provisional 83.33
PRK04180293 pyridoxal biosynthesis lyase PdxS; Provisional 83.24
PLN02417280 dihydrodipicolinate synthase 83.09
PRK09613469 thiH thiamine biosynthesis protein ThiH; Reviewed 82.65
cd00954288 NAL N-Acetylneuraminic acid aldolase, also called 82.56
PRK09234843 fbiC FO synthase; Reviewed 82.24
cd00951289 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also 82.14
PRK15108345 biotin synthase; Provisional 81.96
cd03174265 DRE_TIM_metallolyase DRE-TIM metallolyase superfam 81.94
cd02931382 ER_like_FMN Enoate reductase (ER)-like FMN-binding 81.9
TIGR02320285 PEP_mutase phosphoenolpyruvate phosphomutase. A cl 81.9
TIGR03550322 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav 81.59
PLN02826409 dihydroorotate dehydrogenase 81.34
COG2513289 PrpB PEP phosphonomutase and related enzymes [Carb 81.25
cd04741294 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c 81.22
TIGR03821321 AblA_like_1 lysine-2,3-aminomutase-related protein 81.21
cd04726202 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl 80.32
COG2108353 Uncharacterized conserved protein related to pyruv 80.32
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.2e-207  Score=1611.57  Aligned_cols=545  Identities=60%  Similarity=1.013  Sum_probs=528.4

Q ss_pred             hhhccCCC-cCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 008423           10 WTAWWPTT-RHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPH   88 (566)
Q Consensus        10 ~~~~~~~~-p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~   88 (566)
                      .+||.... |.||+||||+||++.+.|+.+|+.+|+.+|+++||||||++|+++.|+.+|++|+++||+||||||||||.
T Consensus        39 ~dRm~~~g~P~FvdvTWgagG~ta~~s~~ias~~q~~~~v~t~mHlTCtn~~~~~Id~aLe~a~~~GirNILALRGDpP~  118 (590)
T KOG0564|consen   39 MDRMSEGGPPTFVDVTWGAGGSTAELSLGIASSAQNVCGLETCMHLTCTNMPKEMIDKALEQAKALGIRNILALRGDPPI  118 (590)
T ss_pred             HHHHHhcCCCeEEEEEecCCCCcccccHHHHHHHHHhcCccceeeeeccCccHHHHHHHHHHHHHhCchhhhhhcCCCCC
Confidence            34566444 99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCC
Q 008423           89 GQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFY  168 (566)
Q Consensus        89 ~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlff  168 (566)
                      +.+.|.+..++|+||+|||+|||++|||+|||||||||||||+..+.       +++.|+.+||+|+||||||||||+||
T Consensus       119 g~d~~~~~e~gF~yA~DLVr~Irs~YGDyF~IgVAgYPEghpe~~~~-------~~~~Dl~yLk~KvdaGaDFIiTQlFY  191 (590)
T KOG0564|consen  119 GQDKWVEEEGGFRYAVDLVRYIRSKYGDYFCIGVAGYPEGHPEAPSH-------DYLADLPYLKEKVDAGADFIITQLFY  191 (590)
T ss_pred             CccccccccCCchhHHHHHHHHHHHhCCeEEEEeccCCCCCcCCccc-------chhhhhHHHHHhhcccchhhhhhhhc
Confidence            99999999999999999999999999999999999999999986553       36699999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008423          169 DTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILA  248 (566)
Q Consensus       169 D~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~  248 (566)
                      |+|.|++|+++||++||++||+||||||++|++|.|++++||++||++++++|+++|+||++||++|+++++|||++|++
T Consensus       192 d~e~flkfv~~cR~~gi~~PIvPGIMPI~~Y~sf~R~~kls~~~IP~~~~~~L~piKddDeaVr~~Gvel~vemc~kll~  271 (590)
T KOG0564|consen  192 DVETFLKFVKDCRAAGINVPIVPGIMPIQSYRSFLRIAKLSGVSIPQHLMDRLEPIKDDDEAVRNYGVELIVEMCRKLLD  271 (590)
T ss_pred             CHHHHHHHHHHHHHhCCCCCcccccccchhHHHHHHHHHHhCCCCCHHHHHhcccCCCcHHHHHHHhHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC-CCeEEEEcCCchHHHHHHHHHcCCCccc-ccccCCCCC-CCCCCCcccccccccccCCCCcccccCCCCCCCCCCCC
Q 008423          249 HG-IKTLHLYTLNMEKSALAILLNLGLIEES-KISRSLPWR-PPTNVFRVKEDVRPIFWANRPKSYLSRTVGWDQYPRGR  325 (566)
Q Consensus       249 ~G-v~GiHfyTlN~e~~v~~IL~~l~l~~~~-~~~~~~p~~-~~~~~~r~~e~vrpi~w~~r~~s~~~rt~~WdefPnGR  325 (566)
                      +| |+|+||||||+|+++.+||++||++... ...+.+||+ .+.+++|++|.||||||++||+|||+||++||||||||
T Consensus       272 ~g~v~~lHfyTlNlEksv~~IL~~lgll~~~~d~~~vlpw~~~s~~~~R~~e~vRpifw~sr~~syi~Rt~~WdefpnGR  351 (590)
T KOG0564|consen  272 SGVVPGLHFYTLNLEKSVAAILKRLGLLDELKDGDRVLPWRNKSANPKRTEEGVRPIFWASRPKSYISRTAQWDEFPNGR  351 (590)
T ss_pred             cCccceeEEEEecHHHHHHHHHHhcCcccccccccccCCcccccCCccccccccccceeecCCccccccccccccCCCCC
Confidence            99 9999999999999999999999999873 224889999 89999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccCCCCcCcCCCCCChHHHHHhcCCCCCCHhHHHHHHHHhhcCCcCCccCCCCCCCChhHHHHHHHHHHHHh
Q 008423          326 WGDSRNPSYGALSDHQFMRPRSRDKKLHEEWAVPLKSVEDIYEKFKNYCLGKLRSSPWSELDGLQPETKIINEQLGKINV  405 (566)
Q Consensus       326 ~gds~spafge~~~~~~~~~~~~~~~~~~~wg~p~~~~~di~~~f~~y~~g~~~~lPw~~~~~l~~et~~i~~~L~~ln~  405 (566)
                      |||||||||||||+||+.+ |++++++++|||.| +|++||.++|++||+|+++|||||| .||++||++|++||++||+
T Consensus       352 ~GdsrSpAyGeld~y~~~~-~~~~~~~l~~Wg~p-~s~~dv~~~F~~y~~gk~s~lPWsd-~~l~~Et~lI~e~Ll~~N~  428 (590)
T KOG0564|consen  352 WGDSRSPAYGELDDYGPRI-KVSKKKLLELWGVP-KSIEDVKELFIKYLEGKVSALPWSD-LPLQPETSLIKEQLLKLNR  428 (590)
T ss_pred             cCCCCCccccccccccccc-cCCHHHHHHHhCCC-CCHHHHHHHHHHHHhCCcccccccc-CCCChhhHHHHHHHHhhcc
Confidence            9999999999999999777 99999999999999 9999999999999999999999999 9999999999999999999


Q ss_pred             cCceeecCCCCCCCCCCCCCcccccCCCceeeeeeeeeeecChhhHHHHHHhhcCCCceeEEEEcCCCCccccCCCCCCc
Q 008423          406 KGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVN  485 (566)
Q Consensus       406 ~g~~ti~SQP~vng~~S~d~~~GwGp~~GyvyQKay~Eff~~~~~~~~l~~~~~~~~~~~y~a~n~~g~~~~n~~~~~~n  485 (566)
                      +|||||||||+|||+||+||+|||||+||||||||||||||+++.+++|++.++..++|||||+|++|.+.||.+..++|
T Consensus       429 ~g~lTinSQPavNg~~S~dpi~GWGp~~GyvyQKaylEfF~~k~~~~~l~~~~k~~~~vtY~a~n~~g~~~tn~~~~~~n  508 (590)
T KOG0564|consen  429 NGILTINSQPAVNGAPSSDPIFGWGPPGGYVYQKAYLEFFVSKELLDKLIEKLKALPSVTYHAVNKKGEFVTNADESDPN  508 (590)
T ss_pred             CceEEecCCcccCCCcCCCCccccCCCCCeEeehhhhHHhcCHHHHHHHHHHHhcccceEEEEeccccccccCCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeecccCCCcccCceeeCcchhcchhHHHHHhcHHHHcccCCCCCchHHHHHHHhcceEEEEeecCCCC-CChhHHHhh
Q 008423          486 AVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYI-NGDLFAVFA  564 (566)
Q Consensus       486 avTWGvFpg~ei~qpTiv~~~sF~aWkdEaf~~w~~~W~~~y~~~s~s~~ll~~i~~~~~Lv~iv~~d~~-~~~l~~~l~  564 (566)
                      |||||||||+||+||||||++||+|||||||+||. +||++||++|+||+||+++||+|||||||||||+ +++||++|+
T Consensus       509 AVTWGVFPgrEIiQpTIVd~~SF~aWkdEaf~iw~-eWa~ly~~~~pSr~ll~~v~~~y~LV~lVdnDf~~~~~l~~v~l  587 (590)
T KOG0564|consen  509 AVTWGVFPGREIIQPTIVDPVSFKAWKDEAFQIWS-EWANLYPEESPSRKLLESVHDDYCLVSLVDNDFINPDDLFDVLL  587 (590)
T ss_pred             eeEeeccCCCccccceeechhHHHHHHHHHHHHHH-HHHHhCCCCChhHHHHHHHhhceEEEEEeccCCCCcchHHHHHH
Confidence            99999999999999999999999999999999999 6999999999999999999999999999999999 799999875


Q ss_pred             c
Q 008423          565 D  565 (566)
Q Consensus       565 ~  565 (566)
                      +
T Consensus       588 ~  588 (590)
T KOG0564|consen  588 D  588 (590)
T ss_pred             h
Confidence            4

>PLN02540 methylenetetrahydrofolate reductase Back     alignment and domain information
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type Back     alignment and domain information
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form Back     alignment and domain information
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional Back     alignment and domain information
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1 Back     alignment and domain information
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR) Back     alignment and domain information
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed Back     alignment and domain information
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 Back     alignment and domain information
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>TIGR01182 eda Entner-Doudoroff aldolase Back     alignment and domain information
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00262 trpA tryptophan synthase, alpha subunit Back     alignment and domain information
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed Back     alignment and domain information
>PLN02591 tryptophan synthase Back     alignment and domain information
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional Back     alignment and domain information
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 Back     alignment and domain information
>cd00945 Aldolase_Class_I Class I aldolases Back     alignment and domain information
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] Back     alignment and domain information
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) Back     alignment and domain information
>PRK05481 lipoyl synthase; Provisional Back     alignment and domain information
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional Back     alignment and domain information
>cd00452 KDPG_aldolase KDPG and KHG aldolase Back     alignment and domain information
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain Back     alignment and domain information
>PRK07360 FO synthase subunit 2; Reviewed Back     alignment and domain information
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional Back     alignment and domain information
>PRK05927 hypothetical protein; Provisional Back     alignment and domain information
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain Back     alignment and domain information
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit Back     alignment and domain information
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional Back     alignment and domain information
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 Back     alignment and domain information
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed Back     alignment and domain information
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants Back     alignment and domain information
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage Back     alignment and domain information
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) Back     alignment and domain information
>PRK07094 biotin synthase; Provisional Back     alignment and domain information
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional Back     alignment and domain information
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa Back     alignment and domain information
>PLN02591 tryptophan synthase Back     alignment and domain information
>TIGR02351 thiH thiazole biosynthesis protein ThiH Back     alignment and domain information
>PRK12928 lipoyl synthase; Provisional Back     alignment and domain information
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis Back     alignment and domain information
>TIGR00510 lipA lipoate synthase Back     alignment and domain information
>TIGR00423 radical SAM domain protein, CofH subfamily Back     alignment and domain information
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family Back     alignment and domain information
>TIGR01163 rpe ribulose-phosphate 3-epimerase Back     alignment and domain information
>TIGR01163 rpe ribulose-phosphate 3-epimerase Back     alignment and domain information
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea Back     alignment and domain information
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase Back     alignment and domain information
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional Back     alignment and domain information
>cd00408 DHDPS-like Dihydrodipicolinate synthase family Back     alignment and domain information
>TIGR00262 trpA tryptophan synthase, alpha subunit Back     alignment and domain information
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis Back     alignment and domain information
>PRK08508 biotin synthase; Provisional Back     alignment and domain information
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) Back     alignment and domain information
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase Back     alignment and domain information
>PRK05904 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown] Back     alignment and domain information
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed Back     alignment and domain information
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain Back     alignment and domain information
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 Back     alignment and domain information
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain Back     alignment and domain information
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene Back     alignment and domain information
>PRK03170 dihydrodipicolinate synthase; Provisional Back     alignment and domain information
>PRK08445 hypothetical protein; Provisional Back     alignment and domain information
>PRK06245 cofG FO synthase subunit 1; Reviewed Back     alignment and domain information
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 Back     alignment and domain information
>PRK08444 hypothetical protein; Provisional Back     alignment and domain information
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional Back     alignment and domain information
>PLN02417 dihydrodipicolinate synthase Back     alignment and domain information
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed Back     alignment and domain information
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) Back     alignment and domain information
>PRK09234 fbiC FO synthase; Reviewed Back     alignment and domain information
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases Back     alignment and domain information
>PRK15108 biotin synthase; Provisional Back     alignment and domain information
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily Back     alignment and domain information
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain Back     alignment and domain information
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase Back     alignment and domain information
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit Back     alignment and domain information
>PLN02826 dihydroorotate dehydrogenase Back     alignment and domain information
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain Back     alignment and domain information
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein Back     alignment and domain information
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) Back     alignment and domain information
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query566
3apt_A310 Properties And Crystal Structure Of Methylenetetrah 1e-44
1v93_A296 5,10-Methylenetetrahydrofolate Reductase From Therm 1e-44
3fst_A304 Crystal Structure Of Escherichia Coli Methylenetetr 3e-35
3fsu_A304 Crystal Structure Of Escherichia Coli Methylenetetr 3e-35
1zp4_A304 Glu28gln Mutant Of E. Coli Methylenetetrahydrofolat 6e-35
1zp3_A304 E. Coli Methylenetetrahydrofolate Reductase (Oxidiz 6e-35
1b5t_A275 Escherichia Coli Methylenetetrahydrofolate Reductas 6e-35
2fmn_A304 Ala177val Mutant Of E. Coli Methylenetetrahydrofola 2e-34
>pdb|3APT|A Chain A, Properties And Crystal Structure Of Methylenetetrahydrofolate Reductase From Thermus Thermophilus Hb8 Length = 310 Back     alignment and structure 
Iteration: 1

 Score =  177 bits (449), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 91/250 (36%), Positives = 137/250 (54%), Gaps = 10/250 (4%)
Query: 25  WGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRG 84
           +GA GST + ++  A R+Q ++ +  + HLT      +++   L     +G++N+LALRG
Sbjct: 50  YGAMGSTRERSVAWAQRIQ-SLGLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRG 108
Query: 85  DPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESY 144
           DPP G+  F     GF  A +LV  IR  YGD   +  A YPEGHP++         ES 
Sbjct: 109 DPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYPEGHPES---------ESL 159
Query: 145 QSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLR 204
           ++DL + K KV+AG D  ITQLF++   +  F+   R+ GI  PI+PGIMP+ +Y+   R
Sbjct: 160 EADLRHFKAKVEAGLDFAITQLFFNNAHYFGFLERARRAGIGIPILPGIMPVTSYRQLRR 219
Query: 205 MTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKS 264
            T  C   IP  + A LE  +D+ +AV   G+        ++L  G++ +H YTLN   +
Sbjct: 220 FTEVCGASIPGPLLAKLERHQDDPKAVLEIGVEHAVRQVAELLEAGVEGVHFYTLNKSPA 279
Query: 265 ALAILLNLGL 274
              +L  LGL
Sbjct: 280 TRMVLERLGL 289
>pdb|1V93|A Chain A, 5,10-Methylenetetrahydrofolate Reductase From Thermus Thermophilus Hb8 Length = 296 Back     alignment and structure
>pdb|3FST|A Chain A, Crystal Structure Of Escherichia Coli Methylenetetrahydrofolate Reductase Mutant Phe223leu At Ph 7.4 Length = 304 Back     alignment and structure
>pdb|3FSU|A Chain A, Crystal Structure Of Escherichia Coli Methylenetetrahydrofolate Reductase Double Mutant Phe223leuglu28gln Complexed With Methyltetrahydrofolate Length = 304 Back     alignment and structure
>pdb|1ZP4|A Chain A, Glu28gln Mutant Of E. Coli Methylenetetrahydrofolate Reductase (Oxidized) Complex With Methyltetrahydrofolate Length = 304 Back     alignment and structure
>pdb|1ZP3|A Chain A, E. Coli Methylenetetrahydrofolate Reductase (Oxidized) Length = 304 Back     alignment and structure
>pdb|1B5T|A Chain A, Escherichia Coli Methylenetetrahydrofolate Reductase Length = 275 Back     alignment and structure
>pdb|2FMN|A Chain A, Ala177val Mutant Of E. Coli Methylenetetrahydrofolate Reductase Complex With Ly309887 Length = 304 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query566
3apt_A310 Methylenetetrahydrofolate reductase; TIM barrel, o 1e-138
3fst_A304 5,10-methylenetetrahydrofolate reductase; TIM barr 1e-126
3ijd_A315 Uncharacterized protein; structural genomics, unkn 3e-53
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A* Length = 310 Back     alignment and structure
 Score =  402 bits (1036), Expect = e-138
 Identities = 92/268 (34%), Positives = 140/268 (52%), Gaps = 14/268 (5%)

Query: 25  WGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRG 84
           +GA GST + ++  A R+Q+   +  + HLT      +++   L     +G++N+LALRG
Sbjct: 50  YGAMGSTRERSVAWAQRIQSL-GLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRG 108

Query: 85  DPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESY 144
           DPP G+  F     GF  A +LV  IR  YGD   +  A YPEGHP++         ES 
Sbjct: 109 DPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYPEGHPES---------ESL 159

Query: 145 QSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLR 204
           ++DL + K KV+AG D  ITQLF++   +  F+   R+ GI  PI+PGIMP+ +Y+   R
Sbjct: 160 EADLRHFKAKVEAGLDFAITQLFFNNAHYFGFLERARRAGIGIPILPGIMPVTSYRQLRR 219

Query: 205 MTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKS 264
            T  C   IP  + A LE  +D+ +AV   G+        ++L  G++ +H YTLN   +
Sbjct: 220 FTEVCGASIPGPLLAKLERHQDDPKAVLEIGVEHAVRQVAELLEAGVEGVHFYTLNKSPA 279

Query: 265 ALAILLNLGLIEESKISRSLPWRPPTNV 292
              +L  LGL      +   P +    +
Sbjct: 280 TRMVLERLGLRP----ASGQPAKLAAAL 303
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A* Length = 304 Back     alignment and structure
>3ijd_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: C2F; 2.00A {Clostridium thermocellum atcc 27405} Length = 315 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query566
3fst_A304 5,10-methylenetetrahydrofolate reductase; TIM barr 100.0
3apt_A310 Methylenetetrahydrofolate reductase; TIM barrel, o 100.0
3ijd_A315 Uncharacterized protein; structural genomics, unkn 100.0
4e38_A232 Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho 96.51
3lab_A217 Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) 96.34
1geq_A248 Tryptophan synthase alpha-subunit; hyperthermophIl 94.2
1wa3_A205 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, 94.18
3nav_A271 Tryptophan synthase alpha chain; alpha subunit, st 93.84
1vhc_A224 Putative KHG/KDPG aldolase; structural genomics, u 93.35
1rd5_A262 Tryptophan synthase alpha chain, chloroplast; hydr 93.24
3vnd_A267 TSA, tryptophan synthase alpha chain; psychrophili 92.49
2ekc_A262 AQ_1548, tryptophan synthase alpha chain; structur 91.12
1mxs_A225 KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a 90.87
3t7v_A350 Methylornithine synthase PYLB; TIM-barrel fold, mu 89.1
1wbh_A214 KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} 88.48
3iix_A348 Biotin synthetase, putative; adoMet radical, SAM r 88.09
1jub_A311 Dihydroorotate dehydrogenase A; homodimer, alpha-b 87.38
1qop_A268 Tryptophan synthase alpha chain; lyase, carbon-oxy 87.28
2ekc_A262 AQ_1548, tryptophan synthase alpha chain; structur 86.01
1f76_A336 Dihydroorotate dehydrogenase; monomer, alpha-beta- 85.68
3k30_A690 Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi 83.75
3zwt_A367 Dihydroorotate dehydrogenase (quinone), mitochond; 83.74
1qop_A268 Tryptophan synthase alpha chain; lyase, carbon-oxy 83.65
3tha_A252 Tryptophan synthase alpha chain; structural genomi 83.58
3lop_A364 Substrate binding periplasmic protein; protein str 82.31
2yw3_A207 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox 82.16
3ipc_A356 ABC transporter, substrate binding protein (amino; 80.5
3hut_A358 Putative branched-chain amino acid ABC transporter 80.07
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A* Back     alignment and structure
Probab=100.00  E-value=2.9e-68  Score=548.42  Aligned_cols=252  Identities=32%  Similarity=0.555  Sum_probs=236.0

Q ss_pred             chhhccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 008423            9 GWTAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPH   88 (566)
Q Consensus         9 ~~~~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~   88 (566)
                      ..+++....|+|||||||+||+++++|+++|+.+++++|+++|+||||+++|+++|++.|.+++++||+||||||||||.
T Consensus        44 ~~~~l~~l~p~fvsVT~gagg~~r~~t~~~a~~i~~~~g~~~v~Hltc~~~~~~~l~~~L~~~~~~GI~nILaLrGDpp~  123 (304)
T 3fst_A           44 SIDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGDLPP  123 (304)
T ss_dssp             HHHHHHTTCCSEEEECCCTTSSCHHHHHHHHHHHHHHHCCCEEEEEESTTSCHHHHHHHHHHHHHTTCCEEEEECCCCC-
T ss_pred             HHHHHhcCCCCEEEEeeCCCCcchhHHHHHHHHHHHHhCCCeeEEeecCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCC
Confidence            35677788999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCC
Q 008423           89 GQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFY  168 (566)
Q Consensus        89 ~~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlff  168 (566)
                      ++      .++|.+|.|||++||+..  .|+||||+|||+||++.+.+         .|+++||+|++|||||||||+||
T Consensus       124 ~~------~~~~~~A~dLv~~ir~~~--~f~IgvA~yPE~Hp~a~~~~---------~d~~~Lk~KvdAGAdf~iTQ~ff  186 (304)
T 3fst_A          124 GS------GKPEMYASDLVTLLKEVA--DFDISVAAYPEVHPEAKSAQ---------ADLLNLKRKVDAGANRAITQFFF  186 (304)
T ss_dssp             -----------CCCHHHHHHHHHHHC--CCEEEEEECTTCCTTCSCHH---------HHHHHHHHHHHHTCCEEEECCCS
T ss_pred             CC------CCCCCCHHHHHHHHHHcC--CCeEEEEeCCCcCCCCCCHH---------HHHHHHHHHHHcCCCEEEeCccC
Confidence            64      257899999999999863  49999999999999987664         89999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008423          169 DTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILA  248 (566)
Q Consensus       169 D~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~  248 (566)
                      |++.|.+|+++||++||++||+||||||+|++++.||+++||+.||++++++|+++++|+++++++|+++|++||++|++
T Consensus       187 D~~~~~~f~~~~r~~Gi~vPIi~GImPi~s~~~~~~~~~~~Gv~iP~~l~~~l~~~~dd~~~~~~~Gi~~a~e~~~~L~~  266 (304)
T 3fst_A          187 DVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKLADMTNVRIPAWMAQMFDGLDDDAETRKLVGANIAMDMVKILSR  266 (304)
T ss_dssp             CHHHHHHHHHHHHHTTCCSCEECEECCCSCHHHHHHHHHHHTCCCCHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCCcEEEEecccCCHHHHHHHHHcCCCcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeEEEEcCCchHHHHHHHHHcCCCcc
Q 008423          249 HGIKTLHLYTLNMEKSALAILLNLGLIEE  277 (566)
Q Consensus       249 ~Gv~GiHfyTlN~e~~v~~IL~~l~l~~~  277 (566)
                      .|++||||||||+++.+.+|+++||+.+.
T Consensus       267 ~gv~GiH~yt~n~~~~~~~I~~~lg~~~~  295 (304)
T 3fst_A          267 EGVKDFHFYTLNRAEMSYAICHTLGVRPG  295 (304)
T ss_dssp             TTCCEEEEECTTCCHHHHHHHHHTTCCC-
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHhCCCcc
Confidence            99999999999999999999999999774
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A* Back     alignment and structure
>3ijd_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: C2F; 2.00A {Clostridium thermocellum atcc 27405} Back     alignment and structure
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} Back     alignment and structure
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A Back     alignment and structure
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A Back     alignment and structure
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 Back     alignment and structure
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 Back     alignment and structure
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A Back     alignment and structure
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} Back     alignment and structure
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} Back     alignment and structure
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 Back     alignment and structure
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} Back     alignment and structure
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* Back     alignment and structure
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* Back     alignment and structure
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* Back     alignment and structure
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... Back     alignment and structure
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} Back     alignment and structure
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 Back     alignment and structure
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Back     alignment and structure
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... Back     alignment and structure
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... Back     alignment and structure
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} Back     alignment and structure
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum} Back     alignment and structure
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A Back     alignment and structure
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A Back     alignment and structure
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 566
d1b5ta_275 c.1.23.1 (A:) Methylenetetrahydrofolate reductase 2e-60
d1v93a_292 c.1.23.1 (A:) Methylenetetrahydrofolate reductase 4e-60
>d1b5ta_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Escherichia coli [TaxId: 562]} Length = 275 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FAD-linked oxidoreductase
family: Methylenetetrahydrofolate reductase
domain: Methylenetetrahydrofolate reductase
species: Escherichia coli [TaxId: 562]

 Score =  199 bits (506), Expect = 2e-60
 Identities = 84/250 (33%), Positives = 131/250 (52%), Gaps = 17/250 (6%)

Query: 25  WGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRG 84
           +GA     D T  I   +++   +E   HLTC +   +++    +   +NGI++++ALRG
Sbjct: 40  YGANSGERDRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRG 99

Query: 85  DPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESY 144
           D P G  K          A DLV  ++      F I+VA YPE HP+          +S 
Sbjct: 100 DLPPGSGKPEM------YASDLVTLLKEVA--DFDISVAAYPEVHPE---------AKSA 142

Query: 145 QSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLR 204
           Q+DLL LK+KVDAGA+  ITQ F+D + +L+F + C   GI   I+PGI+P++N+K   +
Sbjct: 143 QADLLNLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKK 202

Query: 205 MTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTLHLYTLNMEKS 264
                  +IPA +    + + D+ E  K  G ++  +M K +   G+K  H YTLN  + 
Sbjct: 203 FADMTNVRIPAWMAQMFDGLDDDAETRKLVGANIAMDMVKILSREGVKDFHFYTLNRAEM 262

Query: 265 ALAILLNLGL 274
           + AI   LG+
Sbjct: 263 SYAICHTLGV 272
>d1v93a_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Thermus thermophilus [TaxId: 274]} Length = 292 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query566
d1v93a_292 Methylenetetrahydrofolate reductase {Thermus therm 100.0
d1b5ta_275 Methylenetetrahydrofolate reductase {Escherichia c 100.0
d1vhca_212 Hypothetical protein HI0047 {Haemophilus influenza 97.31
d1mxsa_216 KDPG aldolase {Pseudomonas putida [TaxId: 303]} 97.0
d1wbha1213 KDPG aldolase {Escherichia coli [TaxId: 562]} 96.96
d1wa3a1202 KDPG aldolase {Thermotoga maritima [TaxId: 2336]} 96.72
d1rd5a_261 Trp synthase alpha-subunit {Maize (Zea mays) [TaxI 94.64
d1qopa_267 Trp synthase alpha-subunit {Salmonella typhimurium 94.02
d1geqa_248 Trp synthase alpha-subunit {Archaeon Pyrococcus fu 93.34
d1ujpa_271 Trp synthase alpha-subunit {Thermus thermophilus [ 90.04
d1eepa_388 Inosine monophosphate dehydrogenase (IMPDH) {Lyme 89.78
d1vyra_363 Pentaerythritol tetranirate reductase {Enterobacte 84.52
d1vrda1330 Inosine monophosphate dehydrogenase (IMPDH) {Therm 82.65
>d1v93a_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FAD-linked oxidoreductase
family: Methylenetetrahydrofolate reductase
domain: Methylenetetrahydrofolate reductase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.7e-64  Score=511.75  Aligned_cols=257  Identities=35%  Similarity=0.614  Sum_probs=245.3

Q ss_pred             hhhccCCCcCEEEecCCCCCCCchhHHHHHHHHHhhcCCceeEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC
Q 008423           10 WTAWWPTTRHSATSRWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHG   89 (566)
Q Consensus        10 ~~~~~~~~p~fVsVTwgagG~~~~~Sl~la~~lq~~~Gle~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILaLrGDpp~~   89 (566)
                      .+++-+..|+|||||||++|+++++|+++|..+++ .|+++|+|||||++|+.+|++.|.++.++||+||||||||+|..
T Consensus        35 ~~~L~~~~p~fisVT~~~~g~~~~~tl~~a~~l~~-~G~~~i~Hlt~r~~n~~~l~~~l~~~~~~GI~niLal~GD~p~~  113 (292)
T d1v93a_          35 LEELKAFRPAFVSITYGAMGSTRERSVAWAQRIQS-LGLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRGDPPRG  113 (292)
T ss_dssp             HHHHHTTCCSEEEECCCGGGTTHHHHHHHHHHHHH-TTCCEEEEECCTTSCHHHHHHHHHHHHHTTCCEEEECCCCCCTT
T ss_pred             HHHHhcCCCCEEEecCCCCCccchhHHHHHHHHHh-CCCCceeeeeecCchHHHHHHHHHHHHHhCcCeEeeccCCCCcc
Confidence            44667778999999999999999999999999986 89999999999999999999999999999999999999999998


Q ss_pred             CCCccccCCCcccHHHHHHHHHHHcCCceeEEEEecCCCCCCCCCCCCCCCccchHHHHHHHHHHHHcCCcEEEeccCCC
Q 008423           90 QDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYD  169 (566)
Q Consensus        90 ~~~~~~~~~~F~~A~dLVk~Ir~~~gd~F~IGVAgyPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlffD  169 (566)
                      ++.|.+....|.+|.+||++|++.+++.|++|+|+|||+||++.+.+         .|+++|++|++|||+|||||+|||
T Consensus       114 ~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~ig~a~~Peghp~~~~~~---------~~~~~l~~K~~aGA~fiiTQ~~FD  184 (292)
T d1v93a_         114 ERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYPEGHPESESLE---------ADLRHFKAKVEAGLDFAITQLFFN  184 (292)
T ss_dssp             CSSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEEEECTTCCTTCSSHH---------HHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CcccCCcccchhHHHHHHHHHHHhcCCCcccccccCCCCCccchhHH---------HHHHHHHHHHHhccCeEEEeeecc
Confidence            87777667789999999999999999899999999999999876654         899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCcEEeeecccCCHHHHHHHhccCCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Q 008423          170 TDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAH  249 (566)
Q Consensus       170 ~d~f~~f~~~~R~~Gi~vPIIpGImPI~s~~~~~r~~~l~Gv~VP~~il~~Le~~kddde~vk~~Gv~la~e~i~~L~~~  249 (566)
                      ++.|.+|+++||++|+++||++||||++|++++.+++++||+.||++++++|+..++|+++++++|++++++||++|++.
T Consensus       185 ~~~~~~~~~~~r~~gi~~Pi~~Gi~p~~s~~~l~~~~~~~Gv~iP~~i~~~l~~~~~~~~~~~~~gi~~a~~~~~~L~~~  264 (292)
T d1v93a_         185 NAHYFGFLERARRAGIGIPILPGIMPVTSYRQLRRFTEVCGASIPGPLLAKLERHQDDPKAVLEIGVEHAVRQVAELLEA  264 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCSCEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhccCCCccccccchhHHHHHHHHHhccCCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEcCCchHHHHHHHHHcCCCc
Q 008423          250 GIKTLHLYTLNMEKSALAILLNLGLIE  276 (566)
Q Consensus       250 Gv~GiHfyTlN~e~~v~~IL~~l~l~~  276 (566)
                      |++|+||||||+++.+.+||++||+.|
T Consensus       265 gv~GiH~~t~n~~~~~~~il~~lgl~p  291 (292)
T d1v93a_         265 GVEGVHFYTLNKSPATRMVLERLGLRP  291 (292)
T ss_dssp             TCSEEEEECTTCCHHHHHHHHHTTCCC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHcCCCC
Confidence            999999999999999999999999976
>d1b5ta_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Back     information, alignment and structure
>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} Back     information, alignment and structure
>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure