Citrus Sinensis ID: 008521

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560---
Protein Sequence
MQPLFNAFANQTQSNSSTSTLPQMQAFRPNMLQNSVPMQPQTGIMNPQVPFPLSNSNMPATAPLMNQNNFMNASNPLLIAQSNHLGLPQLGHMFPVHGNFGNMPLNVSQGQLLGPNLSNLPQQFNQNMGFSNGQMCLQSVNQLLSMQMSNPCLFGNPQFGLVNQNQQNFVQPIKDVSGNNTLKSCSSEPRQGQNLQPSAFMRSQRNFIQNGQGSISKSNSKKVSGKNFIKNRTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFEHDENRERMHHNIQGFEDENDDEEEDNDNGEQMKVYIAGKGNTNDEHVRLEEEEGEIID
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHccccccccHHHHcccccccHHHHHcHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccEEEcHHHHHHHHHHHHHcccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccEEcccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccEcc
Coil and Loop (DISEMBL)
MQPLFNafanqtqsnsststlpqmqafrpnmlqnsvpmqpqtgimnpqvpfplsnsnmpataplmnqnnfmnasnplliaqsnhlglpqlghmfpvhgnfgnmplnvsqgqllgpnlsnlpqqfnqnmgfsngqMCLQSVNQLLSmqmsnpclfgnpqfglvnqnqqnfvqpikdvsgnntlkscsseprqgqnlqpsafmRSQRNfiqngqgsisksnskkvsgkNFIKNRTKEFSQGfqkshfhqmhngkrkfgfyndqkpkghgngkAIKFGlanqmnqpqekKRKSLALTYTEQEVKQWCEERrknyptkaninkkltekqsnsdvIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENtmplnkrgrfqnnydkrgrykrkdqfskeqkladkdssntssfnkkkPTLLQKLLSADVKRDKSHLLQTFRFMAINSffkdwpekpvnfplvmvkdggaageVVEEKSlllgeedsegkgRRMVEHfehdenrermhhniqgfedenddeeedndngEQMKVYIAgkgntndehvrleeeegeiid
Flexible Loop (DISEMBL)
MQPLFNAFanqtqsnsstsTLPQMQAFRPNMLQNSVPMQPQTGIMNPQVPFPLSNSNMPATAPLMNQNNFMNASNPLLIAQSNHLGLPQLGHMFPVHGNFGNMPLNVSQGQLLGPNLSNLPQQFNQNMGFSNGQMCLQSVNQLLSMQMSNPCLFGNPQFGLVNQNQQNFVQPIKDVSGNNTLKSCSSEPRQGQNLQPSAFMRSQRNFIQngqgsisksnskkvsGKNFIKNRTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGlanqmnqpqekKRKSLALTYTEQEVKqwceerrknyptkaninkkltekqsnsdviDKEAKMRREQLKEILAKqaelgvevaeipsyylldskkqVRARventmplnkrgrfqnnydkrgrykrkdqfskeqkladkdssntssfnkkkptLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVeekslllgeedsegkgrRMVEHfehdenrermhhniqgfedenddeeEDNDNGEQMKVYIagkgntndehvrleeeegeiid
Low Complexity Region (SEG)
MQPLFNAFAnqtqsnsststLPQMQAFRPNMLQNSVPMQPQTGIMNPQVPFPLSNSNMPATAPLMNQNNFMNASNPLLIAQSNHLGLPQLGHMFPVHGNFGNMPLNVSQGQLLGPNLSNLPQQFNQNMGFSNGQMCLQSVNQLLSMQMSNPCLFGNPQFGLVNQNQQNFVQPIKDVSGNNTLKSCSSEPRQGQNLQPSAFMRSQRNFIQNGQgsisksnskkvsgknFIKNRTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFEHDENRERMHHNIQGFedenddeeedndnGEQMKVYIAGKGNTNDEHVRLEEEEGEIID
Disordered region (IsUnstruct)
***************************************************************************PLLIAQSNHLGLPQLGHMFPVHGNFGNMPLNVSQGQLLG*************MGFSNGQMCLQSVNQLLSMQMSNPCLFGNPQFGLVNQNQQNFV************************************************************************************************************************************W*****************************************ILAKQAELGVEVAEIPSYYLLDS********************************************************************V*RDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEV***********************************************************************************
Disordered Region (DISOPRED)
*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************ADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLV************************************************************************************LEE****I**
Disordered Region (DISEMBL)
********************LPQMQAFRPNMLQNSVPMQPQTGIMNPQVPFPLSNSNMPATAPLMNQNNFMNASNPLLIAQSNHLGLPQLGHMFPVHGNFGNMPLNVSQGQLLGPNLSNLPQQFNQNMGFSNGQMCLQSVNQLLSMQMSNPCLFGNPQFGLVNQNQQNFVQPIKDVSGNNTL************LQPSAFMRSQRNFIQNGQGSISKSNSKKVSGKNFIKNRTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRY************************KKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFEHDENRERMHHNIQGFED***********GEQMKVYIAGKGNTNDEHVRL*********
Disordered Region (DISPRO)
*****************TSTLPQMQAFRPNMLQNSVPMQPQTGIMNPQVPFPLSNSNMPATAPLMNQNNFMNASNPLLIAQSNHLGLPQLGHMFPVHGNFGNMPLNVSQGQLLGPNLSNLPQQFNQNMGFSNGQMCLQSVNQLLSMQMSNPCLFGNPQFGLVNQNQQNFVQPIKDVSGNNTLKSCSSEPRQGQNLQPSAFMRSQR**********************************************************************************RKSLALTYTEQEVKQWCEERRKNYPTKANINKKLT******DVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYL**********************************************************KKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEE****KGRRMVEHFEH***********************DNDNGEQMKVYIAGKGNTNDEHVRLEEEE**II*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQPLFNAFANQTQSNSSTSTLPQMQAFRPNMLQNSVPMQPQTGIMNPQVPFPLSNSNMPATAPLMNQNNFMNASNPLLIAQSNHLGLPQLGHMFPVHGNFGNMPLNVSQGQLLGPNLSNLPQQFNQNMGFSNGQMCLQSVNQLLSMQMSNPCLFGNPQFGLVNQNQQNFVQPIKDVSGNNTLKSCSSEPRQGQNLQPSAFMRSQRNFIQNGQGSISKSNSKKVSGKNFIKNRTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFEHDENxxxxxxxxxxxxxxxxxxxxxxxxxxxxKVYIAGKGNTNDEHVRLEEEEGEIID
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	563
147775405	605	hypothetical protein VITISV_043067 [Viti	0.793	0.738	0.407	5e-78
449446325	599	PREDICTED: uncharacterized protein LOC10	0.841	0.791	0.396	2e-77
449494110	552	PREDICTED: uncharacterized LOC101213190	0.833	0.849	0.395	4e-77
224100559	659	predicted protein [Populus trichocarpa]	0.611	0.522	0.447	6e-76
224113339	674	predicted protein [Populus trichocarpa]	0.921	0.770	0.363	2e-74
356553962	822	PREDICTED: uncharacterized protein LOC10	0.861	0.590	0.360	3e-65
255554855	273	conserved hypothetical protein [Ricinus	0.380	0.783	0.587	4e-63
145334515	470	uncharacterized protein [Arabidopsis tha	0.678	0.812	0.420	4e-62
358347440	553	hypothetical protein MTR_101s0034 [Medic	0.749	0.763	0.373	5e-62
297807865	454	hypothetical protein ARALYDRAFT_488722 [	0.646	0.801	0.391	7e-62

>gi|147775405|emb|CAN73830.1| hypothetical protein VITISV_043067 [Vitis vinifera]

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 224/550 (40%), Positives = 282/550 (51%), Gaps = 103/550 (18%)

Query: 35  SVPMQPQTGIMNPQVPFPLSNSNMPATAPLMNQNNFMNASNPLLIAQSNHLGLPQLGHMF 94
           ++P   Q G++ PQ   P    NMP      NQ  FM    PL   Q+NHLG+P LG   
Sbjct: 40  ALPNPLQMGMLXPQTSIPFI-PNMP------NQFGFM----PL---QNNHLGMPHLGSAQ 85

Query: 95  PVHGNFG--NMPLNVSQ-----------GQLLGPNLSNLPQQFNQNMGFSNGQMCLQSVN 141
              G+F   N   N+ Q             L G N + LP          N Q CLQ+ N
Sbjct: 86  SYQGSFNPQNCVPNLGQSAXRSNPSQPPANLFGHNSAILP---------GNLQFCLQNXN 136

Query: 142 QLLSMQMSNPCLFG------------------NPQFGLVNQNQQNFVQPIKDVS------ 177
           Q   M M N    G                   PQ      NQQ     +  V       
Sbjct: 137 QNFPMPMPNLNQVGPYNIPQASHHMFQLAQALGPQSSAFIPNQQFVPMCVSGVGENVHQD 196

Query: 178 ---------GNNTLK-----------------SCSSEPRQ-GQNLQPSAFMRSQRNFIQN 210
                    G+N LK                 + S +P+Q   N QPS FM+SQ NF+++
Sbjct: 197 NHKLGPPAMGSNALKQPPIANPQLQGNWPTMATSSVQPQQTWNNQQPSNFMKSQGNFVKD 256

Query: 211 GQGSISKSNSKKVSGKNFIKN-RTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNG 269
              + S  N K  S KNF+ N + K    G +KS  H M NG+ K G  N+ + KG  N 
Sbjct: 257 AGVNNSNPNWKNSSRKNFMXNPKGKNSHWGSRKSQLHHMQNGRGKAGISNENRGKGLSNN 316

Query: 270 KAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSD 329
            A      N   Q + +K++ L L YTEQE++ W EER+KNYP+K N+ KK  EK +NS+
Sbjct: 317 MAGNLCRPNFTYQDKVEKKRPLPLNYTEQEIQNWREERKKNYPSKINLEKKSAEKLTNSE 376

Query: 330 VIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDS-KKQVRARVENT-MPLNKRGRF 387
           VI+ E K RR+QLKEILAKQAELGVEVAEIP +YL DS K+QV  R EN      K+ RF
Sbjct: 377 VIEAEVKSRRQQLKEILAKQAELGVEVAEIPPHYLSDSEKQQVHGREENNKKAFGKKERF 436

Query: 388 QNNYDKRGRYKRK--------DQFSKEQKLADKDSSNTSS-----FNKKKPTLLQKLLSA 434
           QN  +KR R+ RK        D F+K+Q+LA  DS +T++      NKKK TLLQKLLS 
Sbjct: 437 QNRGNKRRRHDRKQWQRHDQEDGFTKKQRLAGTDSGDTNASNQPPLNKKKQTLLQKLLST 496

Query: 435 DVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSE 494
           D+KRDK HLLQ FRFMA+NSFFKDWPEKP+ FPLV VK+ G  GEVV+ KS    +   +
Sbjct: 497 DIKRDKRHLLQVFRFMAMNSFFKDWPEKPLKFPLVAVKETGCQGEVVDRKSSPTSKGVPQ 556

Query: 495 GKGRRMVEHF 504
           G  +   E F
Sbjct: 557 GGRKTXAEEF 566

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446325|ref|XP_004140922.1| PREDICTED: uncharacterized protein LOC101213190 [Cucumis sativus]

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 233/587 (39%), Positives = 313/587 (53%), Gaps = 113/587 (19%)

Query: 58  MPATAPLMNQNNFM-NASNPLLIAQSNHLGLPQL--GHM--------FPVHGNFGNMPLN 106
           +P   P M Q   M N  NPL+   +N LG      GHM        FP  G F  MP N
Sbjct: 45  VPTMPPPMFQPGLMMNLQNPLMGLPNNSLGASPFAPGHMGFANSAANFPAQGQFNLMP-N 103

Query: 107 VSQ---------GQLLGPNLSNLPQQFNQNMGFSNGQMCL--QSVNQ-LLSMQMSN---- 150
           V+Q          Q  G N+ NL QQ  QNMG +NGQ CL  Q++NQ ++  QM N    
Sbjct: 104 VNQMNMNSCLPLAQFFGQNMPNLVQQLGQNMGLNNGQFCLPFQNMNQHVIPGQMMNMPQV 163

Query: 151 --------------PCLFGNPQFGL------------VNQNQQNFV-------------- 170
                         P  F NP F              VNQN QNF+              
Sbjct: 164 PSYTSYGGPNQQAVPMPFQNPGFSTAQSFGVNQGMQPVNQNPQNFIPQAMGGAGSNQFPA 223

Query: 171 --QPIKDVSGNNTLK-SCSSEPRQGQNLQPSAFMRSQRNFIQNGQGSISKSNSKKVSGKN 227
             QP++   GN+T+  + S++P+Q +NLQ  AF  +Q N   +  G+ S S S   + +N
Sbjct: 224 SAQPLQ---GNSTMPINSSTQPQQARNLQSPAFAGTQGNSSISDGGNGSNSISNNSAHRN 280

Query: 228 FIKNRTKEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKK 287
           F++N  K    GFQK+  H + N K+KFGF   QK KG  N +  KF   N  +Q +E+K
Sbjct: 281 FMRNSKK----GFQKNQTHHLKNEKKKFGFPGGQKEKGFHNERRNKFCGTNPTDQVKEQK 336

Query: 288 RKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILA 347
           R SL+L YT+QE++QW E RRKNYP+  NI KKLT KQ+N  ++DKEAK+ R++LKEILA
Sbjct: 337 R-SLSLVYTDQEIRQWREARRKNYPSSTNIQKKLTGKQTNCTLVDKEAKLLRQELKEILA 395

Query: 348 KQAELGVEVAEIPSYYLL-----DSKKQVRARV----ENTMPLNKRGRFQNNYDKRGRYK 398
           KQAELGVEVAEIP  YL      D++KQ   R     E      ++   QN  +KRGR K
Sbjct: 396 KQAELGVEVAEIPPEYLSYSEKHDNRKQRGGRSTLGEEAEEASIEKENSQNRLNKRGRCK 455

Query: 399 RKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKD 458
           +K++  K+ K  +K  SN     K++PTLLQKLL ADV++DKS LLQ  RF  +NSFFK+
Sbjct: 456 KKNRPRKKGKF-EKHLSNKPPLKKREPTLLQKLLKADVRKDKSQLLQALRFTVMNSFFKE 514

Query: 459 WPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEED-SEGKGRRMVEH-FEHDENRERMHHN 516
           WP KP+ FP V VK+      VV+E SL  G  +  E     +VE+   HD         
Sbjct: 515 WPNKPLKFPSVTVKENEGETNVVDETSLSTGNFNLQETNNNSLVENDGSHD--------- 565

Query: 517 IQGFEDENDDEEEDNDNGEQMKVYIAGKGNTNDEHVRLEEEEGEIID 563
               + +N+++ +D++  E++K    G G      +++ EEEGEIID
Sbjct: 566 ---IDSDNENDIKDSNKDEKLK----GDG------IQVLEEEGEIID 599

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494110|ref|XP_004159451.1| PREDICTED: uncharacterized LOC101213190 [Cucumis sativus]

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 230/581 (39%), Positives = 310/581 (53%), Gaps = 112/581 (19%)

Query: 63  PLMNQNNFMNASNPLLIAQSNHLGLPQL--GHM--------FPVHGNFGNMPLNVSQ--- 109
           P+      MN  NPL+   +N LG      GHM        FP  G F  MP NV+Q   
Sbjct: 4   PMFQPGLMMNMQNPLMGLPNNSLGASPFAPGHMGFANSAANFPAQGQFNLMP-NVNQMNM 62

Query: 110 ------GQLLGPNLSNLPQQFNQNMGFSNGQMCL--QSVNQ-LLSMQMSN---------- 150
                  Q  G N+ NL QQ  QNMG +NGQ CL  Q++NQ ++  QM N          
Sbjct: 63  NSCLPLAQFFGQNMPNLVQQLGQNMGLNNGQFCLPFQNMNQHVIPGQMMNMPQVPSYTSY 122

Query: 151 --------PCLFGNPQFGL------------VNQNQQNFV----------------QPIK 174
                   P  F NP F              VNQN QNF+                QP++
Sbjct: 123 GGPNQQAVPMPFQNPGFSTAQSFGVNQGMQPVNQNPQNFIPQAMGGAGSNQFPASAQPLQ 182

Query: 175 DVSGNNTLK-SCSSEPRQGQNLQPSAFMRSQRNFIQNGQGSISKSNSKKVSGKNFIKNRT 233
              GN+T+  + S++P+Q +NLQ  AF  +Q N   +  G+ S S S   + +NF++N  
Sbjct: 183 ---GNSTMPINSSTQPQQARNLQSPAFAGTQGNSSISDGGNGSNSISNNSAHRNFMRNSK 239

Query: 234 KEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKKRKSLAL 293
           K    GFQK+  H + N K+KFGF   QK KG  N +  KF   N  +Q +E+KR SL+L
Sbjct: 240 K----GFQKNQTHHLKNEKKKFGFPGGQKEKGFHNERRNKFCGTNPTDQVKEQKR-SLSL 294

Query: 294 TYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELG 353
            YT+QE++QW E RRKNYP+  NI KKLT KQ+N  ++DKEAK+ R++LKEILAKQAELG
Sbjct: 295 VYTDQEIRQWREARRKNYPSSTNIQKKLTGKQTNCTLVDKEAKLLRQELKEILAKQAELG 354

Query: 354 VEVAEIPSYYLL-----DSKKQVRARV----ENTMPLNKRGRFQNNYDKRGRYKRKDQFS 404
           VEVAEIP  YL      D++KQ   R     E      ++   QN  +KRGR K+K++  
Sbjct: 355 VEVAEIPPEYLSYSEKHDNRKQRGGRSTLGEEAEEASIEKENSQNRLNKRGRCKKKNRPR 414

Query: 405 KEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPV 464
           K+ K  +K  SN     K++PTLLQKLL ADV++DKS LLQ  RF  +NSFFK+WP KP+
Sbjct: 415 KKGKF-EKHLSNKPPLKKREPTLLQKLLKADVRKDKSQLLQALRFTVMNSFFKEWPNKPL 473

Query: 465 NFPLVMVKDGGAAGEVVEEKSLLLGEED-SEGKGRRMVEH-FEHDENRERMHHNIQGFED 522
            FP V VK+      VV+E SL  G  +  E     +VE+   HD             + 
Sbjct: 474 KFPSVTVKENEGETNVVDETSLSTGNFNLQETNNNSLVENDGSHD------------IDS 521

Query: 523 ENDDEEEDNDNGEQMKVYIAGKGNTNDEHVRLEEEEGEIID 563
           +N+++ +D++  E++K    G G      +++ EEEGEIID
Sbjct: 522 DNENDIKDSNKDEKLK----GDG------IQVLEEEGEIID 552

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100559|ref|XP_002311923.1| predicted protein [Populus trichocarpa] gi|222851743|gb|EEE89290.1| predicted protein [Populus trichocarpa]

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 184/411 (44%), Positives = 233/411 (56%), Gaps = 67/411 (16%)

Query: 186 SSEPRQGQNLQPSAFMRSQRNFIQNGQGSISKSNSKKVSGKNFIKNRTKEFSQ-GFQKSH 244
           SS  +Q  N QPS + R Q N  +NGQ S  KS  +K SGKN   NR +  SQ G QKS 
Sbjct: 283 SSASQQSWNSQPSTYNRWQGNTARNGQSSTPKSKWEKPSGKNLKNNRNRGRSQSGHQKSD 342

Query: 245 FHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKKRK-SLALTYTEQEVKQW 303
           F+ M NGKRK  F N+   KG+GN +  KFG  +  +Q  E+K K S    YTEQE+KQW
Sbjct: 343 FNCMDNGKRKLEFSNEHGRKGNGNERVAKFGRTDLTDQATEEKSKPSRTFFYTEQEIKQW 402

Query: 304 CEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYY 363
            E RRK+YPTK +I KK  E      VID+EA  R +QLKEILAKQAELGVEVAEIP  Y
Sbjct: 403 RESRRKHYPTKTSIEKKQME------VIDREANFRHKQLKEILAKQAELGVEVAEIPPDY 456

Query: 364 LLDS-------------------------------KKQVRARVENTMPLNKRGRFQNNYD 392
           LLDS                               +KQ   R +N   L K+G+F N +D
Sbjct: 457 LLDSEKLGVEVAEIPPPQVLSSEKLGVEVAEIPPPQKQEHGREDNRRSLTKKGKFWNKHD 516

Query: 393 KRGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAI 452
           KRGR+ +K + +K+   A+++         +KPTLL+KLLS D+KRDK  LLQ FRFM  
Sbjct: 517 KRGRFNKKGRSAKQVGSANEE---------RKPTLLEKLLSTDIKRDKRQLLQVFRFMVA 567

Query: 453 NSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFEHDENRER 512
           NSFFKDWPEKP+ FP V+VK+ G   E+VE+KS L+GEE SE +   + E+F        
Sbjct: 568 NSFFKDWPEKPLKFPSVVVKEDGYEDEIVEKKSSLVGEEVSEDRNNTIAENF-------- 619

Query: 513 MHHNIQGFEDENDDEEEDNDNGEQMKVYIAGKGNTNDEHVRLEEEEGEIID 563
                     + DD  E +   E    ++ GK +  DE  R+  EEGEI+D
Sbjct: 620 ---------GDRDDNIEHDAQVELGNCFVRGKCDIVDEVDRV--EEGEIVD 659

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113339|ref|XP_002316461.1| predicted protein [Populus trichocarpa] gi|222865501|gb|EEF02632.1| predicted protein [Populus trichocarpa]

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 261/718 (36%), Positives = 330/718 (45%), Gaps = 199/718 (27%)

Query: 1   MQPLFNAFANQTQSNSSTSTLPQMQAFRPN-MLQNSVPMQPQTGIMNPQVPF-------P 52
           M+P FN+   +       +     Q F  N  L NS  MQPQ G++NPQ+P        P
Sbjct: 1   MEPFFNSRRPRHHKQKGNTAPYNQQGFSANPSLTNS--MQPQLGLVNPQIPIPFNNSNTP 58

Query: 53  LSNS----NMP----------------ATAPLMNQNNFMNASNPLLIAQSNHLGLPQLGH 92
           L N     NMP                A   L NQ N +NA   +L+ Q N L     G 
Sbjct: 59  LRNGQAMPNMPPLINQQHGLVSGPNDLAILQLQNQVNKLNALK-MLMNQVNQL----QGE 113

Query: 93  MFPVHGNFGNMP--LNVSQGQLLGP--NLSN-----------------LPQQFNQNMG-- 129
           +F     F N+P  +N + G L  P  N+ N                 +P + +Q +G  
Sbjct: 114 LF--GPGFSNLPQQINQNMGLLQNPMQNMMNPVMPMQMPMTSQVGSFNVPSRSHQVVGAQ 171

Query: 130 ----FSNGQMCLQSVNQLLSMQMSNPCLFGNPQFGLVNQNQQ----------NFVQPIKD 175
               F N Q+     N ++    +N    G+ Q    NQ  Q          NFV P   
Sbjct: 172 SPNFFVNQQVKQNQPNFVMPTTGAN----GSKQLSFENQQMQGNLSATQKNQNFVMPAVG 227

Query: 176 VSGNNTLKSCSSE----------------------------------------PRQGQNL 195
            +G+N+L   + +                                         +Q QNL
Sbjct: 228 TNGSNSLHVATQQVQGISPASQQSEKFVMPTMAANGPKPLPAATQQVQGNPFTSQQSQNL 287

Query: 196 QPSAFMRSQRNFIQNGQGSISKSNSKKVSGKNFIKNRTKEFSQ-GFQKSHFHQMHNGKRK 254
           QPSA+ R Q N  +NGQGS   S     SGKNF  N  +E SQ G QKS FH+M NGKRK
Sbjct: 288 QPSAYNRWQGNPAKNGQGSTPNSKQGIFSGKNFKNNPKREQSQSGHQKSEFHRMDNGKRK 347

Query: 255 FGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTK 314
            GF N    KG GN +A KFG ++  NQ  E+KR  +   YTEQE+KQW E RRK++PTK
Sbjct: 348 LGFSNKHGGKGKGNERAAKFGRSDPSNQVMEQKRTHI---YTEQEIKQWRESRRKHFPTK 404

Query: 315 ANINKKLTEKQSNSDVIDKEAKMRRE-------------QLKEILAKQAELGVEVAEIPS 361
            NI KK TEK  +S VIDKEA  RR+             QLKEILAKQAELGVEVAEIP 
Sbjct: 405 TNIEKKQTEKLIDSGVIDKEANFRRKVLNALPRKLDDKLQLKEILAKQAELGVEVAEIPP 464

Query: 362 YY------------------------------------LLDSKKQVRARVENTMPLNKRG 385
            Y                                    LLDS+KQ   R +N   L K+G
Sbjct: 465 EYMLDSEKLGVEVAETPLSYLLDSEKLGVEAAEIPPHHLLDSEKQEHGREDNRRSLTKKG 524

Query: 386 RFQNNYDKRGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQ 445
           RF N +D+RGRYKRK +   +  L +++         +KPTLL+KLL AD+KRDK  LLQ
Sbjct: 525 RFWNKHDRRGRYKRKGRSDMQLGLENEE---------RKPTLLEKLLCADIKRDKHRLLQ 575

Query: 446 TFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFE 505
            FRFM  NSFFKDW +KP+ FP V+VK+ G   E  EEK  L+GEE+SE      VE F 
Sbjct: 576 VFRFMVANSFFKDWSDKPLKFPSVVVKEDGCKDEPQEEKPSLVGEEESEVPNNTTVEDF- 634

Query: 506 HDENRERMHHNIQGFEDENDDEEEDNDNGEQMKVYIAGKGNTNDEHVRLEEEEGEIID 563
                            + DD +E +   E     + GK +  DE  R+  EEGEIID
Sbjct: 635 ----------------GDRDDGDEHDAQVEPGNGSVMGKCDIVDEVYRV--EEGEIID 674

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553962|ref|XP_003545319.1| PREDICTED: uncharacterized protein LOC100786384 [Glycine max]

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 219/607 (36%), Positives = 301/607 (49%), Gaps = 122/607 (20%)

Query: 59  PATAPLMNQNNFMNASN----PLLIAQSNHLGLPQLGH---------------------- 92
           P   P MN   FMNA+N    PL +    H+GLP  GH                      
Sbjct: 236 PFMQPPMNAAPFMNAANHNHFPLHMP---HMGLP--GHQQGQPHVGGLGPQNSVGNANYN 290

Query: 93  --MFP-----VHGNFGNMPLNVSQGQLLGPNLSNLPQQFNQNMGFSNGQMC----LQSVN 141
             MFP     V  N     L+  QGQ L  ++ N+ QQ N NM   NGQ C    +Q++N
Sbjct: 291 NPMFPPVQGQVMQNQAQFNLSPLQGQFLAQSILNMLQQPNMNMSMPNGQFCGPYLMQNMN 350

Query: 142 QLLSMQMSNP------------C-LFG------------------NPQFGLVNQNQQNFV 170
             L MQM NP            C +FG                  NPQ G V  NQ   V
Sbjct: 351 PQLPMQMPNPSQGVPYGMHPGSCPMFGFPNQVPQAMVPQNSMFSTNPQLGFVPGNQ---V 407

Query: 171 QPIKD----------VSGN---------------NTLKSCSSEPRQGQNLQPSAFMR--- 202
           +P  D          VS N               NT  S +       N QP AFM+   
Sbjct: 408 RPQIDPNEKNLNPPNVSANSFVSSSPFSSQQLQGNTSGSLNPNLAHTNNSQPPAFMKQVL 467

Query: 203 -SQRNFIQNGQGSISKSNSKKVSGKNFIKNRTKE--FSQGFQKSHFHQMHNGKRKFGFYN 259
            ++     N + ++  SN K    KNF KN+     F  GFQKS FH ++NGK+  GF  
Sbjct: 468 KTEEKPNSNIKTNVPNSNWKGSPSKNF-KNKPNRGGFQAGFQKSKFHDVNNGKKGSGFPI 526

Query: 260 DQKPKGHGNGKAIKFGLANQMNQPQEKKR---KSLALTYTEQEVKQWCEERRKNYPTKAN 316
           +   KG  +G+   +GL     +P+E K+   +SL++TYT QE++QW E R+KN+P   N
Sbjct: 527 EHNGKGPNSGRGGHYGL-----KPKEHKQQPERSLSVTYTVQEIQQWREARKKNHPFNNN 581

Query: 317 INKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVE 376
           I KK +E   +   I++E   R  +LKE+LAKQAELGVEVAEIPSYYL +S  Q   + E
Sbjct: 582 IQKKHSEHPKDRKAINREVLQR--ELKEVLAKQAELGVEVAEIPSYYLKNSDNQA-LQSE 638

Query: 377 NTMPLNKRGRFQNNYDKRGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADV 436
                  + +FQN ++K+    RK +F+K QK  DKD S + S  K+KPTLLQKLLS+DV
Sbjct: 639 GKNKFTDKRKFQNKFNKKS--DRKGRFAKRQKFDDKDFSESPSLKKRKPTLLQKLLSSDV 696

Query: 437 KRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGK 496
           KRDKSHL+Q FRFM +NSFFK   +KP+ +PLV+VK+ G+  +  EEK L  G++  +G 
Sbjct: 697 KRDKSHLIQVFRFMVMNSFFKHCLDKPLRYPLVVVKEKGSEVD-GEEKYLHTGKDVLKGG 755

Query: 497 GRRMVEHFEHDENRERMHHNIQGFEDENDDEEEDNDNGEQMKVYIAGKGNTNDEHVRLEE 556
               V+      N        +  +D+ +D   DN+  +     +  + ++ +   + +E
Sbjct: 756 NEETVQKIVTFNNDNSHDCEDEDSDDDENDSIVDNNLHKDPSSLVKRQCDSGEGIGKFDE 815

Query: 557 EEGEIID 563
           EEGEII+
Sbjct: 816 EEGEIIE 822

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554855|ref|XP_002518465.1| conserved hypothetical protein [Ricinus communis] gi|223542310|gb|EEF43852.1| conserved hypothetical protein [Ricinus communis]

 Score =  249 bits (635), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 128/218 (58%), Positives = 166/218 (76%), Gaps = 4/218 (1%)

Query: 289 KSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAK 348
           +S AL YTEQE+K W EERRKN+P+KANI K  +E+ +NS  IDKEAK+RRE+LKEILAK
Sbjct: 9   RSPALIYTEQEIKLWREERRKNFPSKANIEKMCSERVTNSGGIDKEAKLRRERLKEILAK 68

Query: 349 QAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRYKRKDQFSKEQK 408
           QAELGVEVAEIPS+YL DS+KQV+ + ++     K+GR ++ +D+RGRY +KD  +++  
Sbjct: 69  QAELGVEVAEIPSHYLSDSEKQVKVKKDSRRSAPKKGRSRHKHDRRGRYNKKDGLTQQNT 128

Query: 409 LADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPL 468
           LA KDSSN SSF++ KPTLLQKLLSA+V++DK HLLQ FRFM +NSFF D PEKP+ FP 
Sbjct: 129 LAKKDSSNGSSFSRTKPTLLQKLLSAEVRKDKHHLLQVFRFMVMNSFFDDGPEKPLKFPS 188

Query: 469 VMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRMVEHFEH 506
           V+VK+     EVV EK+ + G+  SE   +  VE+  H
Sbjct: 189 VVVKE----DEVVAEKTSITGKGISEVSNKTAVENSGH 222

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334515|ref|NP_001078603.1| uncharacterized protein [Arabidopsis thaliana] gi|145358174|ref|NP_197345.2| uncharacterized protein [Arabidopsis thaliana] gi|60547897|gb|AAX23912.1| hypothetical protein At5g18440 [Arabidopsis thaliana] gi|71905555|gb|AAZ52755.1| hypothetical protein At5g18440 [Arabidopsis thaliana] gi|71905557|gb|AAZ52756.1| hypothetical protein At5g18440 [Arabidopsis thaliana] gi|332005180|gb|AED92563.1| uncharacterized protein [Arabidopsis thaliana] gi|332005181|gb|AED92564.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 185/440 (42%), Positives = 246/440 (55%), Gaps = 58/440 (13%)

Query: 69  NFMNASNPLLIAQSNHLGLPQLGHMFPVHGNFGNMPLNVSQGQLLGPNLSNLPQQFNQNM 128
           N MNA N L +     +  P +GH         NMP+         PN+   PQ FN NM
Sbjct: 43  NPMNA-NQLGMMNPQMMNNPMMGH---------NMPM---------PNMPIHPQFFN-NM 82

Query: 129 GFSNGQMCLQS-VNQLLSMQMSNPCLFGNPQFGLVNQNQQ-----NFVQPIKD---VSGN 179
                Q  + + +NQLL      P L GN QF + N N       NF QP  +    S  
Sbjct: 83  PQQLPQFAMPNHINQLL------PNLLGNLQFAVANSNLMGHSLPNFFQPSLEPHAFSSR 136

Query: 180 NTLKSCSS-------EPRQGQNLQPSAFM--RSQRNFIQNGQGSISKSNSKKVSGKNFIK 230
             L S +S        P Q     P  F   R Q   + N  GS    N  +     F K
Sbjct: 137 PQLNSFNSLPYPPVPNPHQNHQSGPPGFSEPRPQGQSVDNTNGSGPNGNDFR---NKFPK 193

Query: 231 NRT-KEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGL--ANQMNQPQEKK 287
           ++  K   QGFQ+   HQ  NGKRK GF  D +  G GN   +K GL  ++  N  +EKK
Sbjct: 194 HQNFKGPGQGFQRPQLHQADNGKRKSGFNKDHR--GKGNNNKMKTGLDGSDTGNIAKEKK 251

Query: 288 RKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILA 347
           R S AL YT +EV+QW E RRKNYPTK  + KK+ +K  ++ ++D+EAKMRR+QL+E+LA
Sbjct: 252 R-SYALMYTPREVQQWREARRKNYPTKFLVEKKV-KKNVSASILDEEAKMRRQQLREVLA 309

Query: 348 KQAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRYKRKDQF-SKE 406
           KQAELGVEVAE+PS+YL ++ +QV     N     ++GRFQNN   + R+ RKD+F +K+
Sbjct: 310 KQAELGVEVAEVPSHYLSNNDEQVNGDRGNNN--GRKGRFQNNRRNKRRHDRKDKFDNKK 367

Query: 407 QKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNF 466
            +L DK SS  SS   +KPTLL+KLLSAD+KRDKS LLQ FRFM +NS  K++PE+P+  
Sbjct: 368 PRLEDKKSSQDSSITTRKPTLLEKLLSADIKRDKSQLLQVFRFMVMNSLLKEFPEQPLKL 427

Query: 467 PLVMVKDGGAAGEVVEEKSL 486
           PL+ VK+ G   + +E+ S+
Sbjct: 428 PLITVKETGCE-DAMEDPSI 446

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358347440|ref|XP_003637765.1| hypothetical protein MTR_101s0034 [Medicago truncatula] gi|355503700|gb|AES84903.1| hypothetical protein MTR_101s0034 [Medicago truncatula]

 Score =  245 bits (625), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 203/543 (37%), Positives = 273/543 (50%), Gaps = 121/543 (22%)

Query: 93  MFPVHGNFGNMPLNVSQGQLLGPNLSNLPQQFNQNM---GFSNGQMC------LQSV--N 141
           MFPVHG  G  P      Q+L  N+ NL QQ N NM      N Q C      +Q++   
Sbjct: 60  MFPVHGQGG--PQITHNAQILAQNILNLLQQPNMNMPNMNVPNAQFCAPGPYPMQNMMNQ 117

Query: 142 QLLSMQMS--------------------------------NPCLFGNPQFGLVNQNQQNF 169
           QL  MQM                                 NP   GNPQFG+V  NQ   
Sbjct: 118 QLPPMQMQRQNPTQQPYGMQPVQQPMFGFPNQVPHAMVPQNPMFNGNPQFGMVPGNQ--- 174

Query: 170 VQPIKDVSGNNTLKSCSSE----------------------PRQGQNLQPSAFMRS--QR 205
           ++P  D++  N + + +                        P    N Q SAF  S  Q 
Sbjct: 175 IRPQIDLNEKNRVPAGNGNANGFVPGGPFPPQQLQGNNGPVPHNANNAQGSAFRNSHPQV 234

Query: 206 NFIQNGQGSISKSNSKKVSGKNFIKNRTKEFSQG-FQKSHFHQMHNGKRKFGFYNDQKPK 264
           N   N   + + SN K    KNF   + +  SQG FQKS F+  + GKR   F  + K K
Sbjct: 235 NPNSNMNTNFANSNWKGSPNKNFKNKQNRGGSQGGFQKSKFNDTNKGKR---FSKEHKGK 291

Query: 265 GHGNGKAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEK 324
           G  N +A  FGL    N  QE KR S +LTY+EQE++QW E RRKN+P++  I K+ +E+
Sbjct: 292 GPNNERAGHFGL----NSKQEPKR-SFSLTYSEQEIQQWREARRKNHPSREKIEKQQSEQ 346

Query: 325 QSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKR 384
             +S VID+E   R  +LKE+LAKQAELG+EVAEIPSYYL++   Q     +       +
Sbjct: 347 SKDSKVIDRELLQR--ELKEVLAKQAELGIEVAEIPSYYLMNGTNQGLQSEDKKNSFTDK 404

Query: 385 GRFQN----NYDKRGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDK 440
            +F+N    N D+R R  +K      QK AD+D       NKKKPTLLQKLLSAD+KRDK
Sbjct: 405 RKFKNKLMRNPDRRSRNNKK------QKFADRDLLE----NKKKPTLLQKLLSADIKRDK 454

Query: 441 SHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSLLLGEEDSEGKGRRM 500
           SHL Q FRF+  NSFFKD+P+KP+ +P V VK+ G+  EV   K  L G       G  +
Sbjct: 455 SHLFQVFRFITANSFFKDYPDKPLVYPPVSVKEMGS--EVYGGKKHLQG-------GEAV 505

Query: 501 VEHFEHDENRERMHHNIQGFEDENDDEEEDNDNGEQMKVYIAGKGNTNDEHVRLEEEEGE 560
           +EH      +E +   ++G ++ +D+E+E++D           +G+  D     +EEEGE
Sbjct: 506 LEH----GTKEIVQKFVKGSDNGHDNEDEESD-----------EGDNEDGINEFDEEEGE 550

Query: 561 IID 563
           II+
Sbjct: 551 IIE 553

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807865|ref|XP_002871816.1| hypothetical protein ARALYDRAFT_488722 [Arabidopsis lyrata subsp. lyrata] gi|297317653|gb|EFH48075.1| hypothetical protein ARALYDRAFT_488722 [Arabidopsis lyrata subsp. lyrata]

 Score =  244 bits (624), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 163/416 (39%), Positives = 233/416 (56%), Gaps = 52/416 (12%)

Query: 74  SNPLLIAQSNHLGLPQLGHMFPVHGNF-GNMPLNVSQGQLLGPNLSNLPQQFNQNMGFSN 132
           SNP++   +N + +P +    P+H  F  NMP      Q   PN                
Sbjct: 59  SNPMMGHMNNPIPMPNM----PIHPQFFNNMPQQQQLHQFAMPN---------------- 98

Query: 133 GQMCLQSVNQLLSMQMSNPCLFGNPQFGLVNQNQQ-----NFVQPIKDVSGN------NT 181
                  +NQLL      P L GN QF + N N       NF QP  + S        N+
Sbjct: 99  ------HINQLL------PNLLGNLQFAVANSNLMGHSLPNFFQPNLEPSAFTSRPQLNS 146

Query: 182 LKSCSSEPRQGQNLQPSAFMRSQRNFIQNGQGSISKSNSKKVSGKNFIKNRT-KEFSQGF 240
             S    P    +L+P  F   +     + + + S SN      K F K++  K   QGF
Sbjct: 147 FNSLPYPPVPNHHLRPPGFSEPRPQVGIDDRTNGSGSNGNDFRNK-FTKHQNFKGPGQGF 205

Query: 241 QKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGL-ANQMNQPQEKKRKSLALTYTEQE 299
           Q+   HQ  NGKRK GF  D +  G GN   +K GL  +  +   ++KR+S AL YT ++
Sbjct: 206 QRPQLHQADNGKRKSGFNKDHR--GKGNYNKMKNGLDGSDADNIAKEKRRSYALMYTPKD 263

Query: 300 VKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVEVAEI 359
           V QW E RRKN+PT+ N+ KK+ +K  ++ ++D+EAKMRR+QL+E+LAKQAELG+EVA++
Sbjct: 264 VNQWREARRKNFPTRLNVEKKV-KKNVSASILDEEAKMRRQQLREVLAKQAELGIEVADV 322

Query: 360 PSYYLLDSKKQVRARVENTMPLNKRGRFQNNYDKRGRYKRKDQFSKEQKLADKDSSNTSS 419
           PS+YL ++ ++V    +N     ++ +FQNN  K+ R+ RKD+F K  +L DK+SS  S 
Sbjct: 323 PSHYLSNTDERVHG--DNGANDGQKRKFQNNRHKQRRHGRKDKFDKTPRLDDKNSSQESP 380

Query: 420 FNKKKPTLLQKLLSADVKRDKSHLLQTFRFMAINSFFKDWPEKPVNFPLVMVKDGG 475
              KKPTLL+KLLSA++KRDK HLLQ FRFM +NSF K++PE+P+  PL+ V++ G
Sbjct: 381 MTTKKPTLLEKLLSANIKRDKIHLLQVFRFMVMNSFLKEFPEQPLKLPLITVEETG 436

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	563
TAIR|locus:2146238	470	NUFIP "AT5G18440" [Arabidopsis	0.740	0.887	0.402	3.1e-67
ZFIN|ZDB-GENE-030131-6203	406	zgc:171476 "zgc:171476" [Danio	0.065	0.091	0.475	1.8e-05
RGD|1359440	486	Nufip1 "nuclear fragile X ment	0.154	0.179	0.350	2.1e-05
UNIPROTKB|Q9UHK0	495	NUFIP1 "Nuclear fragile X ment	0.101	0.115	0.446	2.4e-05
UNIPROTKB|J9P0P5	487	NUFIP1 "Uncharacterized protei	0.101	0.117	0.446	7.5e-05
UNIPROTKB|F1PK39	488	NUFIP1 "Uncharacterized protei	0.101	0.116	0.446	7.6e-05
UNIPROTKB|F1RJZ3	494	NUFIP1 "Uncharacterized protei	0.101	0.115	0.446	7.7e-05
UNIPROTKB|E1C0G7	360	NUFIP1 "Uncharacterized protei	0.060	0.094	0.459	0.00013
UNIPROTKB|E1C0G8	434	NUFIP1 "Uncharacterized protei	0.060	0.078	0.459	0.00021
UNIPROTKB|F1NXC7	464	NUFIP1 "Uncharacterized protei	0.060	0.073	0.459	0.00025

TAIR|locus:2146238 NUFIP "AT5G18440" [Arabidopsis thaliana (taxid:3702)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 186/462 (40%), Positives = 251/462 (54%)

Query:    52 PLSNSNMPATAPLMNQNNFMNASNPLLIAQSNHLGLPQLGHMFPVHGN-FGNMPLNVSQG 110
             P  NS  P   P   Q+         +   SNH      G+  P++ N  G M   +   
Sbjct:     3 PPYNSFQPQARPYRPQHQLQQQQQ--INGFSNHQQQQHNGYQNPMNANQLGMMNPQMMNN 60

Query:   111 QLLGPNLS--NLP--QQFNQNMGFSNGQMCLQS-VNQLLSMQMSNPCLFGNPQFGLVNQN 165
              ++G N+   N+P   QF  NM     Q  + + +NQLL      P L GN QF + N N
Sbjct:    61 PMMGHNMPMPNMPIHPQFFNNMPQQLPQFAMPNHINQLL------PNLLGNLQFAVANSN 114

Query:   166 QQ-----NFVQPIKD---VSGNNTLKSCSS-----EPRQGQNLQ--PSAFM--RSQRNFI 208
                    NF QP  +    S    L S +S      P   QN Q  P  F   R Q   +
Sbjct:   115 LMGHSLPNFFQPSLEPHAFSSRPQLNSFNSLPYPPVPNPHQNHQSGPPGFSEPRPQGQSV 174

Query:   209 QNGQXXXXXXXXXXXXXXXFIKNRT-KEFSQGFQKSHFHQMHNGKRKFGFYNDQKPKGHG 267
              N                 F K++  K   QGFQ+   HQ  NGKRK GF  D +  G G
Sbjct:   175 DN---TNGSGPNGNDFRNKFPKHQNFKGPGQGFQRPQLHQADNGKRKSGFNKDHR--GKG 229

Query:   268 NGKAIKFGL--ANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANINKKLTEKQ 325
             N   +K GL  ++  N  +EKKR S AL YT +EV+QW E RRKNYPTK  + KK+ +K 
Sbjct:   230 NNNKMKTGLDGSDTGNIAKEKKR-SYALMYTPREVQQWREARRKNYPTKFLVEKKV-KKN 287

Query:   326 SNSDVIDKEAKMRREQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENTMPLNKRG 385
              ++ ++D+EAKMRR+QL+E+LAKQAELGVEVAE+PS+YL ++ +QV     N     ++G
Sbjct:   288 VSASILDEEAKMRRQQLREVLAKQAELGVEVAEVPSHYLSNNDEQVNGDRGNNN--GRKG 345

Query:   386 RFQNNYDKRGRYKRKDQF-SKEQKLADKDSSNTSSFNKKKPTLLQKLLSADVKRDKSHLL 444
             RFQNN   + R+ RKD+F +K+ +L DK SS  SS   +KPTLL+KLLSAD+KRDKS LL
Sbjct:   346 RFQNNRRNKRRHDRKDKFDNKKPRLEDKKSSQDSSITTRKPTLLEKLLSADIKRDKSQLL 405

Query:   445 QTFRFMAINSFFKDWPEKPVNFPLVMVKDGGAAGEVVEEKSL 486
             Q FRFM +NS  K++PE+P+  PL+ VK+ G   + +E+ S+
Sbjct:   406 QVFRFMVMNSLLKEFPEQPLKLPLITVKETGCE-DAMEDPSI 446

GO:0003674 "molecular_function" evidence=ND

GO:0000491 "small nucleolar ribonucleoprotein complex assembly" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

ZFIN|ZDB-GENE-030131-6203 zgc:171476 "zgc:171476" [Danio rerio (taxid:7955)]

 Score = 100 (40.3 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
 Identities = 19/40 (47%), Positives = 29/40 (72%)

Query:   296 TEQEVKQWCEERRKNYPTKANINKK--LTE-KQSNSDVID 332
             TE+++++W EERR+NYPT  N+ KK  L E K+   DV++
Sbjct:   143 TEEDIRRWREERRRNYPTLRNVEKKQKLMEVKEQRGDVLE 182

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

RGD|1359440 Nufip1 "nuclear fragile X mental retardation protein interacting protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 106 (42.4 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
 Identities = 34/97 (35%), Positives = 49/97 (50%)

Query:   238 QGFQKSHFHQMHNGKRKFGFYNDQKPKGHGNGKAIKFGLANQMNQPQEKKRKSLALTYTE 297
             +GF+    + +H  + K     D     H   K ++F   N M+ P  KK K      T 
Sbjct:   174 RGFKNQEKYDIHMSEHKKCPEVDCSFSAHE--KIVQFHWRN-MHAPGMKKIK----LDTP 226

Query:   298 QEVKQWCEERRKNYPTKANIN-KKLT--EKQSNSDVI 331
             +++ +W EERRKNYPT ANI  KKL   EK+   +V+
Sbjct:   227 EDIARWREERRKNYPTLANIERKKLLQLEKEKRGEVL 263

GO:0000492 "box C/D snoRNP assembly" evidence=IEA;ISO

GO:0003723 "RNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005726 "perichromatin fibrils" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0008023 "transcription elongation factor complex" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA;ISO

GO:0022626 "cytosolic ribosome" evidence=IEA;ISO

GO:0030515 "snoRNA binding" evidence=IEA;ISO

GO:0030674 "protein binding, bridging" evidence=IEA;ISO

GO:0042802 "identical protein binding" evidence=IEA;ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0048786 "presynaptic active zone" evidence=IEA;ISO

GO:0070761 "pre-snoRNP complex" evidence=IEA;ISO

UNIPROTKB|Q9UHK0 NUFIP1 "Nuclear fragile X mental retardation-interacting protein 1" [Homo sapiens (taxid:9606)]

 Score = 100 (40.3 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
 Identities = 29/65 (44%), Positives = 37/65 (56%)

Query:   270 KAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANIN--KKLT-EKQS 326
             K ++F   N M+ P  KK K      T +E+ +W EERRKNYPT ANI   KKL  EK+ 
Sbjct:   211 KIVQFHWRN-MHAPGMKKIK----LDTPEEIARWREERRKNYPTLANIERKKKLKLEKEK 265

Query:   327 NSDVI 331
                V+
Sbjct:   266 RGAVL 270

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0003677 "DNA binding" evidence=NAS

GO:0006396 "RNA processing" evidence=TAS

GO:0048786 "presynaptic active zone" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

GO:0005726 "perichromatin fibrils" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016363 "nuclear matrix" evidence=IDA

GO:0008023 "transcription elongation factor complex" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0000492 "box C/D snoRNP assembly" evidence=IMP

GO:0042802 "identical protein binding" evidence=IPI

GO:0030674 "protein binding, bridging" evidence=IPI

GO:0030515 "snoRNA binding" evidence=IDA

GO:0070761 "pre-snoRNP complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|J9P0P5 NUFIP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 100 (40.3 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
 Identities = 29/65 (44%), Positives = 37/65 (56%)

Query:   270 KAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANIN--KKLT-EKQS 326
             K ++F   N M+ P  KK K      T +E+ +W EERRKNYPT ANI   KKL  EK+ 
Sbjct:   208 KIVQFHWRN-MHAPGMKKIK----LDTPEEIARWREERRKNYPTLANIERKKKLKLEKEK 262

Query:   327 NSDVI 331
                V+
Sbjct:   263 RGAVL 267

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1PK39 NUFIP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 100 (40.3 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
 Identities = 29/65 (44%), Positives = 37/65 (56%)

Query:   270 KAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANIN--KKLT-EKQS 326
             K ++F   N M+ P  KK K      T +E+ +W EERRKNYPT ANI   KKL  EK+ 
Sbjct:   209 KIVQFHWRN-MHAPGMKKIK----LDTPEEIARWREERRKNYPTLANIERKKKLKLEKEK 263

Query:   327 NSDVI 331
                V+
Sbjct:   264 RGAVL 268

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1RJZ3 NUFIP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 101 (40.6 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
 Identities = 29/65 (44%), Positives = 38/65 (58%)

Query:   270 KAIKFGLANQMNQPQEKKRKSLALTYTEQEVKQWCEERRKNYPTKANIN--KKLT-EKQS 326
             K ++F   N M+ P  KK K      T +E+ +W EERRKNYPT ANI   KKL  EK+ 
Sbjct:   210 KIVQFHWRN-MHAPGVKKIK----LDTPEEIARWREERRKNYPTLANIERKKKLKLEKEK 264

Query:   327 NSDVI 331
             +  V+
Sbjct:   265 SGAVL 269

GO:0070761 "pre-snoRNP complex" evidence=IEA

GO:0048786 "presynaptic active zone" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0030515 "snoRNA binding" evidence=IEA

GO:0022626 "cytosolic ribosome" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0008023 "transcription elongation factor complex" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005726 "perichromatin fibrils" evidence=IEA

GO:0000492 "box C/D snoRNP assembly" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1C0G7 NUFIP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 88 (36.0 bits), Expect = 0.00013, Sum P(2) = 0.00013
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query:   298 QEVKQWCEERRKNYPTKANINKKLT---EKQSNSDVI 331
             +E+ +W EER+KN+PT ANI KK     EK+   +V+
Sbjct:    82 EEIARWREERKKNFPTLANIEKKKVMQMEKEERGEVL 118

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1C0G8 NUFIP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 88 (36.0 bits), Expect = 0.00021, Sum P(2) = 0.00021
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query:   298 QEVKQWCEERRKNYPTKANINKKLT---EKQSNSDVI 331
             +E+ +W EER+KN+PT ANI KK     EK+   +V+
Sbjct:    82 EEIARWREERKKNFPTLANIEKKKVMQMEKEERGEVL 118

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NXC7 NUFIP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 88 (36.0 bits), Expect = 0.00025, Sum P(2) = 0.00025
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query:   298 QEVKQWCEERRKNYPTKANINKKLT---EKQSNSDVI 331
             +E+ +W EER+KN+PT ANI KK     EK+   +V+
Sbjct:   101 EEIARWREERKKNFPTLANIEKKKVMQMEKEERGEVL 137

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000492 "box C/D snoRNP assembly" evidence=IEA

GO:0005726 "perichromatin fibrils" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0008023 "transcription elongation factor complex" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0022626 "cytosolic ribosome" evidence=IEA

GO:0030515 "snoRNA binding" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048786 "presynaptic active zone" evidence=IEA

GO:0070761 "pre-snoRNP complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	563
pfam10453	57	pfam10453, NUFIP1, Nuclear fragile X mental retard	3e-07

>gnl|CDD|220763 pfam10453, NUFIP1, Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 296 TEQEVKQWCEERRKNYPTKANINKKLTEKQSN 327
           T +E+ +W EER+KNYPTKANI KK   ++  
Sbjct: 20  TPEEIAKWIEERKKNYPTKANIEKKKKAEEER 51

Proteins in this family have been implicated in the assembly of the large subunit of the ribosome and in telomere maintenance. Some proteins in this family contain a CCCH zinc finger. This family contains a protein called human fragile X mental retardation-interacting protein 1, which is known to bind RNA and is phosphorylated upon DNA damage. Length = 57

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	563
PF10453	56	NUFIP1: Nuclear fragile X mental retardation-inter	99.11
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	87.32

>PF10453 NUFIP1: Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1); InterPro: IPR019496 Nuclear fragile X mental retardation-interacting protein 1 (Nufip1) has been implicated in the assembly of the large subunit of the ribosome [] and in telomere maintenance []

Probab=99.11  E-value=7.9e-11  Score=94.23  Aligned_cols=31  Identities=61%  Similarity=0.901  Sum_probs=28.2

Q ss_pred             cccCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 008521          293 LTYTEQEVKQWCEERRKNYPTKANINKKLTE  323 (563)
Q Consensus       293 l~~t~eeI~~WreERrKNyPT~anIe~K~~e  323 (563)
                      .++|++||++|||||||||||+++|++|+++
T Consensus        16 ~L~t~eeI~~W~eERrk~~PT~~~i~~k~~~   46 (56)
T PF10453_consen   16 KLQTPEEIAKWIEERRKNYPTKANIEKKKAE   46 (56)
T ss_pred             ecCCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            3479999999999999999999999998765

It is known to bind RNA [] and is phosphorylated upon DNA damage []. This entry represents a conserved domain found within Nufip1. Some proteins containing this region also contain a CCCH zinc finger.

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.32  E-value=0.2  Score=34.69  Aligned_cols=26  Identities=19%  Similarity=0.188  Sum_probs=19.3

Q ss_pred             CCCCcceeccCCCCcccCCCCccchhh
Q 008521          381 LNKRGRFQNNYDKRGRYKRKDQFSKEQ  407 (563)
Q Consensus       381 ~~K~CKF~nrGg~RgRcgRKcRFsh~~  407 (563)
                      .++.|+||.+.| .|++|.+|+|+|.+
T Consensus         2 k~~~C~~f~~~g-~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    2 KTKLCRFFMRTG-TCPFGDKCRFAHGE   27 (27)
T ss_dssp             TSSB-HHHHHTS---TTGGGSSSBSSG
T ss_pred             ccccChhhccCC-ccCCCCCcCccCCC
Confidence            467899999977 67899999999963

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	563
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-13
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 70.7 bits (172), Expect = 7e-13
 Identities = 76/551 (13%), Positives = 152/551 (27%), Gaps = 184/551 (33%)

Query: 97  HGNFGNMPLNVSQGQLLGPN-LSNLPQQFNQNMGFSNGQMCLQSVNQLLSMQMSNPCLFG 155
           H +  +M     + Q    + LS     F  N    + Q   +S+  L   ++ +  +  
Sbjct: 1   HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI--LSKEEIDH--IIM 56

Query: 156 NPQ--------FGLVNQNQQNFVQP-IKDVSGNNT--LKSCSSEPRQGQNLQPSAFMR-- 202
           +          F  +   Q+  VQ  +++V   N   L      P + +  QPS   R  
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM----SPIKTEQRQPSMMTRMY 112

Query: 203 -SQRNFIQNGQGSISKSNSKKVSGKNFIKNRTKEFSQGFQKSHFHQMHNGKRKFGF---- 257
             QR+ + N     +K N  ++     ++    E     +      +       G     
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA-KNVLIDGV------LGSGKTW 165

Query: 258 -----YNDQKPKGHGNGKA--IKFG--------------LANQMNQP-QEKKRKSLALTY 295
                    K +   + K   +                 L  Q++     +   S  +  
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 296 TEQEVKQWCEE--RRKNYPT--------------KA-NIN-KKL--TEKQSNSDVIDKEA 335
               ++       + K Y                 A N++ K L  T  +  +D +    
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 336 KMR-----------REQLKEILAKQAELGVEVAEIPSYYLLDSKKQVRARVENTMPL--- 381
                          +++K +L K   L     ++P              V  T P    
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKY--LDCRPQDLPR------------EVLTTNPRRLS 331

Query: 382 -------NKRGRFQNNYDKRGRYKRKDQFSKEQKLADKDSSNTSSFNKKKPTLLQKLLSA 434
                  +    +  N+    ++   D+ +   +         SS N  +P   +K+   
Sbjct: 332 IIAESIRDGLATWD-NW----KHVNCDKLTTIIE---------SSLNVLEPAEYRKM--- 374

Query: 435 DVKRDKSHLLQTFRFMAINSFFKD-----------WPEKPVNFPLVMVKDGGAAGEVVEE 483
                       F  +++  F              W +   +  +V+V         + +
Sbjct: 375 ------------FDRLSV--FPPSAHIPTILLSLIWFDVIKSDVMVVVNK-------LHK 413

Query: 484 KSLLLGEEDSEGKGRRMVEH---FE---HDENRERMHHNI-------QGFEDENDDEEED 530
            SL+  E+    K   +       E     EN   +H +I       + F D +D     
Sbjct: 414 YSLV--EKQP--KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF-DSDDLIPPY 468

Query: 531 NDNGEQMKVYI 541
            D       Y 
Sbjct: 469 LDQ------YF 473

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 43.2 bits (101), Expect = 6e-05
 Identities = 15/82 (18%), Positives = 35/82 (42%), Gaps = 27/82 (32%)

Query: 297 EQE-VKQWCEERRKNYPTKANINKKLTEKQSNSDVIDKEAKMRREQLKEILAKQAELGVE 355
           E E +++W EE+R          K+L E        D  +K+  ++ +E    +A+    
Sbjct: 83  EPESIRKWREEQR----------KRLQEL-------DAASKVMEQEWRE----KAK---- 117

Query: 356 VAEIPSYYLLDSKKQVRARVEN 377
             ++  +    S++  + ++ N
Sbjct: 118 -KDLEEWNQRQSEQVEKNKINN 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	563
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	92.98
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	86.09
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	82.32

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.98  E-value=0.012  Score=45.05  Aligned_cols=24  Identities=8%  Similarity=-0.003  Sum_probs=19.7

Q ss_pred             CcceeccCCCCcccCCCCccchhhh
Q 008521          384 RGRFQNNYDKRGRYKRKDQFSKEQK  408 (563)
Q Consensus       384 ~CKF~nrGg~RgRcgRKcRFsh~~k  408 (563)
                      +||||.+|+ +|=-|.+|+|+|.+-
T Consensus         2 PCK~yHtg~-kCy~gd~C~FSH~pL   25 (56)
T d2cqea1           2 PCKLYHTTG-NCINGDDCMFSHDPL   25 (56)
T ss_dssp             BCSHHHHTS-CCSSCTTCSSBCCCC
T ss_pred             CcceeecCC-cccCCCcccccCCcc
Confidence            699999987 455789999999654

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.09  E-value=0.16  Score=35.81  Aligned_cols=27  Identities=26%  Similarity=0.219  Sum_probs=22.2

Q ss_pred             CCCCcceeccCCCCcccCCCCccchhhh
Q 008521          381 LNKRGRFQNNYDKRGRYKRKDQFSKEQK  408 (563)
Q Consensus       381 ~~K~CKF~nrGg~RgRcgRKcRFsh~~k  408 (563)
                      .++-|++|.++| .|++|.+|.|+|...
T Consensus         8 KT~lC~~~~~~g-~C~~G~~C~FAHg~~   34 (40)
T d1m9oa_           8 KTELCRTYSESG-RCRYGAKCQFAHGLG   34 (40)
T ss_dssp             CSCCCSGGGGTS-CCTTTTTCSSCSSSC
T ss_pred             ccccChhhhcCC-cCCCCCCCCCCCCHH
Confidence            678999988765 578999999999653

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.32  E-value=0.13  Score=35.64  Aligned_cols=27  Identities=19%  Similarity=0.124  Sum_probs=22.3

Q ss_pred             CCCCcceeccCCCCcccCCCCccchhhh
Q 008521          381 LNKRGRFQNNYDKRGRYKRKDQFSKEQK  408 (563)
Q Consensus       381 ~~K~CKF~nrGg~RgRcgRKcRFsh~~k  408 (563)
                      .++-|++|...| .|++|.+|.|+|-..
T Consensus         5 KT~lC~~~~~~g-~C~~G~~C~FAHg~~   31 (36)
T d1rgoa1           5 KTELCRPFEESG-TCKYGEKCQFAHGFH   31 (36)
T ss_dssp             TSSBCHHHHHHS-CCTTGGGCSSBSSGG
T ss_pred             chhhCcchhcCC-cCCCCCcCCCcCCHH
Confidence            578999988755 578999999999764