Citrus Sinensis ID: 008575
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 561 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C5V6 | 670 | DNA topoisomerase 6 subun | yes | no | 0.991 | 0.829 | 0.861 | 0.0 | |
| C3NHT6 | 530 | Type 2 DNA topoisomerase | yes | no | 0.707 | 0.749 | 0.373 | 2e-70 | |
| Q9YE64 | 568 | Type 2 DNA topoisomerase | yes | no | 0.736 | 0.727 | 0.334 | 2e-70 | |
| C3NDW7 | 530 | Type 2 DNA topoisomerase | yes | no | 0.707 | 0.749 | 0.373 | 5e-70 | |
| C3MYN1 | 530 | Type 2 DNA topoisomerase | yes | no | 0.707 | 0.749 | 0.373 | 5e-70 | |
| C3MPN7 | 530 | Type 2 DNA topoisomerase | yes | no | 0.707 | 0.749 | 0.373 | 5e-70 | |
| C4KGX9 | 530 | Type 2 DNA topoisomerase | yes | no | 0.707 | 0.749 | 0.373 | 5e-70 | |
| C3N5B3 | 530 | Type 2 DNA topoisomerase | yes | no | 0.707 | 0.749 | 0.373 | 5e-70 | |
| O05207 | 530 | Type 2 DNA topoisomerase | N/A | no | 0.707 | 0.749 | 0.373 | 1e-69 | |
| Q97ZF0 | 530 | Type 2 DNA topoisomerase | yes | no | 0.707 | 0.749 | 0.366 | 3e-69 |
| >sp|Q9C5V6|TOP6B_ARATH DNA topoisomerase 6 subunit B OS=Arabidopsis thaliana GN=TOP6B PE=1 SV=1 | Back alignment and function desciption |
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Score = 1018 bits (2633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/556 (86%), Positives = 521/556 (93%)
Query: 6 DPKKRKSKSPKTPNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAES 65
+ KK SK+ K NES LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVEN+LDSAES
Sbjct: 8 ETKKGSSKNSKDSNESKLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENALDSAES 67
Query: 66 ISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQA 125
ISELP VE+TIEEI KSKFNSMIGL+DRERVDT+LYDDYETEKAR +RLAKEARA E+QA
Sbjct: 68 ISELPEVEVTIEEIVKSKFNSMIGLIDRERVDTQLYDDYETEKARGKRLAKEARASEIQA 127
Query: 126 KNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ 185
KN A GKK KEP +K K RGEAS+Y+VTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ
Sbjct: 128 KNLASGKKNKEPGVSKVLKARGEASYYKVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ 187
Query: 186 TRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKREN 245
TRGKFGLGAKMALIWSKMSTGLPIEISSSM+S N+++FC+LDIDIHRNIPH+HLHEK+ N
Sbjct: 188 TRGKFGLGAKMALIWSKMSTGLPIEISSSMKSQNYVTFCRLDIDIHRNIPHIHLHEKKGN 247
Query: 246 KDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRR 305
K++WHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLF+F+SE EKNVTI+F+RR
Sbjct: 248 KEKWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFRFISETPEKNVTIKFTRR 307
Query: 306 TDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGP 365
TDVMPP+P+ETKHHPSSVDLLLIK LI +TSK TLLQFLQ+EFVNI K+LA RLIGEMGP
Sbjct: 308 TDVMPPIPIETKHHPSSVDLLLIKRLITDTSKKTLLQFLQNEFVNINKTLAARLIGEMGP 367
Query: 366 EFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATY 425
+F P MAVKS+TSQQ+VRIHQLFRQAKFDDPSG CLSPAGEYNLRLGIIKELHPDMVATY
Sbjct: 368 DFGPSMAVKSVTSQQMVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPDMVATY 427
Query: 426 SGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWS 485
SGSAQVFEGHPFIVEAGVS+GG+DVKQG+NIFRFANRIPLLFEQG DVVTRTA+KRINW+
Sbjct: 428 SGSAQVFEGHPFIVEAGVSLGGRDVKQGINIFRFANRIPLLFEQGADVVTRTALKRINWN 487
Query: 486 SYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVR 545
SYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDD EIA+AVKSAIQQCCIQLKSKIV+
Sbjct: 488 SYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDISEIATAVKSAIQQCCIQLKSKIVK 547
Query: 546 KIQDREQQERKRNLSR 561
++Q REQQERKR+LSR
Sbjct: 548 RLQAREQQERKRSLSR 563
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Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity. The B subunit binds ATP. Involved in cell-elongation processes. Arabidopsis thaliana (taxid: 3702) EC: 5EC: .EC: 9EC: 9EC: .EC: 1EC: .EC: 3 |
| >sp|C3NHT6|TOP6B_SULIN Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=top6B PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9YE64|TOP6B_AERPE Type 2 DNA topoisomerase 6 subunit B OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=top6B PE=3 SV=2 | Back alignment and function description |
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| >sp|C3NDW7|TOP6B_SULIY Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=top6B PE=3 SV=1 | Back alignment and function description |
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| >sp|C3MYN1|TOP6B_SULIM Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=top6B PE=3 SV=1 | Back alignment and function description |
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| >sp|C3MPN7|TOP6B_SULIL Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=top6B PE=3 SV=1 | Back alignment and function description |
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| >sp|C4KGX9|TOP6B_SULIK Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=top6B PE=3 SV=1 | Back alignment and function description |
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| >sp|C3N5B3|TOP6B_SULIA Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus islandicus (strain M.16.27) GN=top6B PE=3 SV=1 | Back alignment and function description |
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| >sp|O05207|TOP6B_SULSH Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus shibatae GN=top6B PE=1 SV=1 | Back alignment and function description |
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| >sp|Q97ZF0|TOP6B_SULSO Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=top6B PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 561 | ||||||
| 297746379 | 673 | unnamed protein product [Vitis vinifera] | 0.991 | 0.826 | 0.892 | 0.0 | |
| 357454399 | 671 | DNA topoisomerase 6 subunit B [Medicago | 0.991 | 0.828 | 0.893 | 0.0 | |
| 449448770 | 696 | PREDICTED: DNA topoisomerase 6 subunit B | 0.991 | 0.798 | 0.863 | 0.0 | |
| 356550360 | 673 | PREDICTED: DNA topoisomerase 6 subunit B | 0.991 | 0.826 | 0.888 | 0.0 | |
| 30685928 | 670 | DNA topoisomerase 6 subunit B [Arabidops | 0.991 | 0.829 | 0.861 | 0.0 | |
| 359478762 | 656 | PREDICTED: DNA topoisomerase 6 subunit B | 0.960 | 0.821 | 0.865 | 0.0 | |
| 255544766 | 656 | Type II DNA topoisomerase VI subunit B, | 0.960 | 0.821 | 0.861 | 0.0 | |
| 9294405 | 694 | DNA topoisomerase VI subunit B-like prot | 0.991 | 0.801 | 0.825 | 0.0 | |
| 297835044 | 691 | hypothetical protein ARALYDRAFT_318827 [ | 0.992 | 0.806 | 0.820 | 0.0 | |
| 356550362 | 656 | PREDICTED: DNA topoisomerase 6 subunit B | 0.960 | 0.821 | 0.861 | 0.0 |
| >gi|297746379|emb|CBI16435.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1048 bits (2709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/556 (89%), Positives = 529/556 (95%)
Query: 6 DPKKRKSKSPKTPNESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAES 65
+PKK KSK+ + P E+ LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAES
Sbjct: 12 EPKKTKSKTARKPKENPLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAES 71
Query: 66 ISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQA 125
ISELP VEITIEEIGKSKFNSMIGLVDRER+D +LYDD+ET KARE+RLAKEAR QELQA
Sbjct: 72 ISELPEVEITIEEIGKSKFNSMIGLVDRERIDEELYDDFETAKAREKRLAKEARTQELQA 131
Query: 126 KNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQ 185
KNAALGKKVKEP A+KG KGRGEASFYRVTCKDNG+GMPHDDIPNMFGRVLSGTKYGLKQ
Sbjct: 132 KNAALGKKVKEPQASKGMKGRGEASFYRVTCKDNGRGMPHDDIPNMFGRVLSGTKYGLKQ 191
Query: 186 TRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKREN 245
TRGKFGLGAKMALIWSKMSTGLPIEISSSM+ ++ISFC+LDIDIHRNIPH+HLHEKR+N
Sbjct: 192 TRGKFGLGAKMALIWSKMSTGLPIEISSSMKGQSYISFCRLDIDIHRNIPHIHLHEKRDN 251
Query: 246 KDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRR 305
K+RW GAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVS+ ++KNVTIRF+RR
Sbjct: 252 KERWCGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSDTSDKNVTIRFARR 311
Query: 306 TDVMPPVPVETKHHPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGP 365
TD+MPPVP ETK+HPS+VDLLLIK LI+ETSK LLQFLQHEFVNIGKS AERLIGEMGP
Sbjct: 312 TDIMPPVPAETKYHPSAVDLLLIKRLISETSKENLLQFLQHEFVNIGKSYAERLIGEMGP 371
Query: 366 EFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATY 425
+FSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSG CLSPAGEYNLRLGIIKELHPDMVATY
Sbjct: 372 DFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPDMVATY 431
Query: 426 SGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWS 485
SGSAQVFEGHPF+VEAGVS+GGKDVKQGLNIFRFANRIPLLFEQG DVVTRTA+KRINW+
Sbjct: 432 SGSAQVFEGHPFMVEAGVSIGGKDVKQGLNIFRFANRIPLLFEQGADVVTRTALKRINWN 491
Query: 486 SYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVR 545
SYKINQ QDKIGVFVSIVSTKIPFKGTGKEYIGDD EIASAVKS+IQQCCIQLKSKIV+
Sbjct: 492 SYKINQAQDKIGVFVSIVSTKIPFKGTGKEYIGDDISEIASAVKSSIQQCCIQLKSKIVK 551
Query: 546 KIQDREQQERKRNLSR 561
KIQ R QQERKRNLS+
Sbjct: 552 KIQARVQQERKRNLSK 567
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357454399|ref|XP_003597480.1| DNA topoisomerase 6 subunit B [Medicago truncatula] gi|355486528|gb|AES67731.1| DNA topoisomerase 6 subunit B [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|449448770|ref|XP_004142138.1| PREDICTED: DNA topoisomerase 6 subunit B-like [Cucumis sativus] gi|449525918|ref|XP_004169963.1| PREDICTED: DNA topoisomerase 6 subunit B-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356550360|ref|XP_003543555.1| PREDICTED: DNA topoisomerase 6 subunit B-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|30685928|ref|NP_188714.2| DNA topoisomerase 6 subunit B [Arabidopsis thaliana] gi|75169001|sp|Q9C5V6.1|TOP6B_ARATH RecName: Full=DNA topoisomerase 6 subunit B; Short=AtTOP6B; AltName: Full=Protein BRASSINOSTEROID INSENSITIVE 3; AltName: Full=Protein ELONGATED HYPOCOTYL 6; AltName: Full=Protein ROOT HAIRLESS 3 gi|12331188|emb|CAC24690.1| topoisomerase 6 subunit B [Arabidopsis thaliana] gi|332642901|gb|AEE76422.1| DNA topoisomerase 6 subunit B [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|359478762|ref|XP_002283111.2| PREDICTED: DNA topoisomerase 6 subunit B [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255544766|ref|XP_002513444.1| Type II DNA topoisomerase VI subunit B, putative [Ricinus communis] gi|223547352|gb|EEF48847.1| Type II DNA topoisomerase VI subunit B, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|9294405|dbj|BAB02486.1| DNA topoisomerase VI subunit B-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297835044|ref|XP_002885404.1| hypothetical protein ARALYDRAFT_318827 [Arabidopsis lyrata subsp. lyrata] gi|297331244|gb|EFH61663.1| hypothetical protein ARALYDRAFT_318827 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|356550362|ref|XP_003543556.1| PREDICTED: DNA topoisomerase 6 subunit B-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 561 | ||||||
| TAIR|locus:2091916 | 670 | TOP6B "topoisomerase 6 subunit | 0.967 | 0.810 | 0.848 | 1.3e-251 | |
| GENEDB_PFALCIPARUM|MAL13P1.328 | 561 | MAL13P1.328 "hypothetical prot | 0.212 | 0.212 | 0.286 | 8.7e-08 | |
| UNIPROTKB|Q8ID53 | 561 | MAL13P1.328 "DNA topoisomerase | 0.212 | 0.212 | 0.286 | 8.7e-08 | |
| UNIPROTKB|Q7RKQ6 | 313 | PY02844 "Uncharacterized prote | 0.422 | 0.757 | 0.217 | 0.00011 |
| TAIR|locus:2091916 TOP6B "topoisomerase 6 subunit B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2423 (858.0 bits), Expect = 1.3e-251, P = 1.3e-251
Identities = 461/543 (84%), Positives = 499/543 (91%)
Query: 19 NESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEE 78
NES LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVEN+LDSAESISELP VE+TIEE
Sbjct: 21 NESKLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENALDSAESISELPEVEVTIEE 80
Query: 79 IGKSKFNSMIGLVDRERVDTKLYDDYETXXXXXXXXXXXXXXXXXQAKNAALGKKVKEPS 138
I KSKFNSMIGL+DRERVDT+LYDDYET QAKN A GKK KEP
Sbjct: 81 IVKSKFNSMIGLIDRERVDTQLYDDYETEKARGKRLAKEARASEIQAKNLASGKKNKEPG 140
Query: 139 ATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMAL 198
+K K RGEAS+Y+VTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMAL
Sbjct: 141 VSKVLKARGEASYYKVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMAL 200
Query: 199 IWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVI 258
IWSKMSTGLPIEISSSM+S N+++FC+LDIDIHRNIPH+HLHEK+ NK++WHGAEIQVVI
Sbjct: 201 IWSKMSTGLPIEISSSMKSQNYVTFCRLDIDIHRNIPHIHLHEKKGNKEKWHGAEIQVVI 260
Query: 259 EGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKH 318
EGNWTTYRSKILHYMRQMAVITPYAQFLF+F+SE EKNVTI+F+RRTDVMPP+P+ETKH
Sbjct: 261 EGNWTTYRSKILHYMRQMAVITPYAQFLFRFISETPEKNVTIKFTRRTDVMPPIPIETKH 320
Query: 319 HPSSVDLLLIKGLIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTS 378
HPSSVDLLLIK LI +TSK TLLQFLQ+EFVNI K+LA RLIGEMGP+F P MAVKS+TS
Sbjct: 321 HPSSVDLLLIKRLITDTSKKTLLQFLQNEFVNINKTLAARLIGEMGPDFGPSMAVKSVTS 380
Query: 379 QQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFI 438
QQ+VRIHQLFRQAKFDDPSG CLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFI
Sbjct: 381 QQMVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFI 440
Query: 439 VEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGV 498
VEAGVS+GG+DVKQG+NIFRFANRIPLLFEQG DVVTRTA+KRINW+SYKINQTQDKIGV
Sbjct: 441 VEAGVSLGGRDVKQGINIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGV 500
Query: 499 FVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRN 558
FVSIVSTKIPFKGTGKEYIGDD EIA+AVKSAIQQCCIQLKSKIV+++Q REQQERKR+
Sbjct: 501 FVSIVSTKIPFKGTGKEYIGDDISEIATAVKSAIQQCCIQLKSKIVKRLQAREQQERKRS 560
Query: 559 LSR 561
LSR
Sbjct: 561 LSR 563
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| GENEDB_PFALCIPARUM|MAL13P1.328 MAL13P1.328 "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q8ID53 MAL13P1.328 "DNA topoisomerase VI, B subunit, putative" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q7RKQ6 PY02844 "Uncharacterized protein" [Plasmodium yoelii yoelii (taxid:73239)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9C5V6 | TOP6B_ARATH | 5, ., 9, 9, ., 1, ., 3 | 0.8615 | 0.9910 | 0.8298 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 5.99.1.3 | 0.979 |
| 3rd Layer | 5.99.1 | 0.983 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 561 | |||
| PRK04184 | 535 | PRK04184, PRK04184, DNA topoisomerase VI subunit B | 1e-119 | |
| COG1389 | 538 | COG1389, COG1389, DNA topoisomerase VI, subunit B | 3e-97 | |
| TIGR01052 | 488 | TIGR01052, top6b, DNA topoisomerase VI, B subunit | 1e-78 | |
| cd00823 | 151 | cd00823, TopoIIB_Trans, TopoIIB_Trans: Transducer | 2e-63 | |
| pfam09239 | 160 | pfam09239, Topo-VIb_trans, Topoisomerase VI B subu | 1e-61 | |
| PRK14868 | 795 | PRK14868, PRK14868, DNA topoisomerase VI subunit B | 8e-27 | |
| PRK14868 | 795 | PRK14868, PRK14868, DNA topoisomerase VI subunit B | 8e-20 | |
| PRK14867 | 659 | PRK14867, PRK14867, DNA topoisomerase VI subunit B | 9e-20 | |
| PRK04184 | 535 | PRK04184, PRK04184, DNA topoisomerase VI subunit B | 5e-17 | |
| PRK14867 | 659 | PRK14867, PRK14867, DNA topoisomerase VI subunit B | 1e-15 | |
| COG1389 | 538 | COG1389, COG1389, DNA topoisomerase VI, subunit B | 2e-15 | |
| TIGR01052 | 488 | TIGR01052, top6b, DNA topoisomerase VI, B subunit | 7e-14 | |
| PRK14868 | 795 | PRK14868, PRK14868, DNA topoisomerase VI subunit B | 2e-08 | |
| PRK14867 | 659 | PRK14867, PRK14867, DNA topoisomerase VI subunit B | 3e-07 | |
| cd00329 | 107 | cd00329, TopoII_MutL_Trans, MutL_Trans: transducer | 8e-04 | |
| pfam13589 | 134 | pfam13589, HATPase_c_3, Histidine kinase-, DNA gyr | 0.001 |
| >gnl|CDD|235246 PRK04184, PRK04184, DNA topoisomerase VI subunit B; Validated | Back alignment and domain information |
|---|
Score = 362 bits (932), Expect = e-119
Identities = 147/409 (35%), Positives = 241/409 (58%), Gaps = 15/409 (3%)
Query: 152 YRVTCKDNGKGMPHDDIPNMFGRVLSGTKYG-LKQTRGKFGLGAKMALIWSKMSTGLPIE 210
YRVT +DNG G+P ++IP +FG++L G+K+ L+Q+RG+ G+G A+++++M+TG P+
Sbjct: 75 YRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQGIGISAAVLYAQMTTGKPVR 134
Query: 211 ISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIEGNWTTYRSKIL 270
+ SS + +L ID +N P + E+ + DRWHG +++ IEG+W + +I
Sbjct: 135 VISSTGGSKKAYYFELKIDTKKNEPIILEREEVDW-DRWHGTRVELEIEGDWYRAKQRIY 193
Query: 271 HYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKG 330
Y+++ A++ P+A+ FK + + + F R TD +P P E K HP VDL +K
Sbjct: 194 EYLKRTAIVNPHARITFK----DPDGEI-LVFPRATDKLPKPPKEIKPHPHGVDLGTLKR 248
Query: 331 LIAETSKGTLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQ 390
+ A T + TL +FL EF +G A+ ++ + G P K LT +++ R+ + F++
Sbjct: 249 MAARTKRRTLKEFLVEEFSRVGDKTADEILEKAG--LDPNKKPKELTREELERLVEAFKK 306
Query: 391 AKFDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK-D 449
KF P CLSP GE + G+ K L P+ VA + +V+ GHPFIVE G++ GG+
Sbjct: 307 YKFMAPPTACLSPIGEELIEKGLKKILKPEFVAAVTRKPKVYSGHPFIVEVGIAYGGEIP 366
Query: 450 VKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQ-TQDKIGVFVSIVSTKIP 508
+ RFANR+PLL+++G V+T+ A++ I+W Y I Q Q + V V + STK+P
Sbjct: 367 PDDKPELLRFANRVPLLYDEGSCVITK-AVESIDWKRYGIEQPPQAPLVVLVHVASTKVP 425
Query: 509 FKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557
+ GKE I D EI ++ A+Q+ +LK + RK +E++ +K+
Sbjct: 426 YTSEGKEAI-ADVPEIEKEIRLALQEVARKLKKYLSRK--RKEEEAKKK 471
|
Length = 535 |
| >gnl|CDD|224307 COG1389, COG1389, DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233250 TIGR01052, top6b, DNA topoisomerase VI, B subunit | Back alignment and domain information |
|---|
| >gnl|CDD|238420 cd00823, TopoIIB_Trans, TopoIIB_Trans: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIB family of DNA topoisomerases similar to Sulfolobus shibatae topoisomerase VI (topoVI) | Back alignment and domain information |
|---|
| >gnl|CDD|220150 pfam09239, Topo-VIb_trans, Topoisomerase VI B subunit, transducer | Back alignment and domain information |
|---|
| >gnl|CDD|237842 PRK14868, PRK14868, DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237842 PRK14868, PRK14868, DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237841 PRK14867, PRK14867, DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235246 PRK04184, PRK04184, DNA topoisomerase VI subunit B; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|237841 PRK14867, PRK14867, DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224307 COG1389, COG1389, DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233250 TIGR01052, top6b, DNA topoisomerase VI, B subunit | Back alignment and domain information |
|---|
| >gnl|CDD|237842 PRK14868, PRK14868, DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237841 PRK14867, PRK14867, DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238202 cd00329, TopoII_MutL_Trans, MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins | Back alignment and domain information |
|---|
| >gnl|CDD|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 561 | |||
| COG1389 | 538 | DNA topoisomerase VI, subunit B [DNA replication, | 100.0 | |
| TIGR01052 | 488 | top6b DNA topoisomerase VI, B subunit. This model | 100.0 | |
| PRK04184 | 535 | DNA topoisomerase VI subunit B; Validated | 100.0 | |
| PRK14868 | 795 | DNA topoisomerase VI subunit B; Provisional | 100.0 | |
| PRK14867 | 659 | DNA topoisomerase VI subunit B; Provisional | 100.0 | |
| PF09239 | 160 | Topo-VIb_trans: Topoisomerase VI B subunit, transd | 100.0 | |
| cd00823 | 151 | TopoIIB_Trans TopoIIB_Trans: Transducer domain, ha | 100.0 | |
| PRK05559 | 631 | DNA topoisomerase IV subunit B; Reviewed | 99.85 | |
| PRK05644 | 638 | gyrB DNA gyrase subunit B; Validated | 99.76 | |
| COG0323 | 638 | MutL DNA mismatch repair enzyme (predicted ATPase) | 99.72 | |
| smart00433 | 594 | TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras | 99.72 | |
| PRK00095 | 617 | mutL DNA mismatch repair protein; Reviewed | 99.7 | |
| TIGR01059 | 654 | gyrB DNA gyrase, B subunit. This model describes t | 99.68 | |
| TIGR00585 | 312 | mutl DNA mismatch repair protein MutL. All protein | 99.64 | |
| TIGR01055 | 625 | parE_Gneg DNA topoisomerase IV, B subunit, proteob | 99.64 | |
| PRK14939 | 756 | gyrB DNA gyrase subunit B; Provisional | 99.62 | |
| TIGR01058 | 637 | parE_Gpos DNA topoisomerase IV, B subunit, Gram-po | 99.53 | |
| KOG1979 | 694 | consensus DNA mismatch repair protein - MLH1 famil | 99.43 | |
| COG0187 | 635 | GyrB Type IIA topoisomerase (DNA gyrase/topo II, t | 99.4 | |
| PF02518 | 111 | HATPase_c: Histidine kinase-, DNA gyrase B-, and H | 99.36 | |
| COG4191 | 603 | Signal transduction histidine kinase regulating C4 | 99.35 | |
| PTZ00109 | 903 | DNA gyrase subunit b; Provisional | 99.34 | |
| PRK05218 | 613 | heat shock protein 90; Provisional | 99.32 | |
| PHA02569 | 602 | 39 DNA topoisomerase II large subunit; Provisional | 99.32 | |
| PF13589 | 137 | HATPase_c_3: Histidine kinase-, DNA gyrase B-, and | 99.31 | |
| PTZ00272 | 701 | heat shock protein 83 kDa (Hsp83); Provisional | 99.31 | |
| TIGR02938 | 494 | nifL_nitrog nitrogen fixation negative regulator N | 99.3 | |
| PLN03128 | 1135 | DNA topoisomerase 2; Provisional | 99.25 | |
| COG0326 | 623 | HtpG Molecular chaperone, HSP90 family [Posttransl | 99.24 | |
| COG5002 | 459 | VicK Signal transduction histidine kinase [Signal | 99.22 | |
| KOG1978 | 672 | consensus DNA mismatch repair protein - MLH2/PMS1/ | 99.22 | |
| PRK09303 | 380 | adaptive-response sensory kinase; Validated | 99.21 | |
| PRK14083 | 601 | HSP90 family protein; Provisional | 99.21 | |
| COG2205 | 890 | KdpD Osmosensitive K+ channel histidine kinase [Si | 99.17 | |
| PRK11006 | 430 | phoR phosphate regulon sensor protein; Provisional | 99.14 | |
| COG3290 | 537 | CitA Signal transduction histidine kinase regulati | 99.13 | |
| PRK15053 | 545 | dpiB sensor histidine kinase DpiB; Provisional | 99.1 | |
| PRK10364 | 457 | sensor protein ZraS; Provisional | 99.1 | |
| PRK11086 | 542 | sensory histidine kinase DcuS; Provisional | 99.09 | |
| PRK10755 | 356 | sensor protein BasS/PmrB; Provisional | 99.08 | |
| PRK10604 | 433 | sensor protein RstB; Provisional | 99.07 | |
| PTZ00130 | 814 | heat shock protein 90; Provisional | 99.06 | |
| PRK10549 | 466 | signal transduction histidine-protein kinase BaeS; | 99.06 | |
| PRK11091 | 779 | aerobic respiration control sensor protein ArcB; P | 99.04 | |
| PLN03237 | 1465 | DNA topoisomerase 2; Provisional | 99.03 | |
| PRK10618 | 894 | phosphotransfer intermediate protein in two-compon | 99.03 | |
| PTZ00108 | 1388 | DNA topoisomerase 2-like protein; Provisional | 99.01 | |
| PRK13837 | 828 | two-component VirA-like sensor kinase; Provisional | 99.0 | |
| PRK15347 | 921 | two component system sensor kinase SsrA; Provision | 98.99 | |
| PRK11107 | 919 | hybrid sensory histidine kinase BarA; Provisional | 98.98 | |
| COG0642 | 336 | BaeS Signal transduction histidine kinase [Signal | 98.98 | |
| TIGR01386 | 457 | cztS_silS_copS heavy metal sensor kinase. Members | 98.98 | |
| PRK10815 | 485 | sensor protein PhoQ; Provisional | 98.97 | |
| PRK11466 | 914 | hybrid sensory histidine kinase TorS; Provisional | 98.94 | |
| PRK09470 | 461 | cpxA two-component sensor protein; Provisional | 98.94 | |
| TIGR03785 | 703 | marine_sort_HK proteobacterial dedicated sortase s | 98.93 | |
| PRK10490 | 895 | sensor protein KdpD; Provisional | 98.91 | |
| PRK09835 | 482 | sensor kinase CusS; Provisional | 98.9 | |
| TIGR02956 | 968 | TMAO_torS TMAO reductase sytem sensor TorS. This p | 98.9 | |
| PRK09467 | 435 | envZ osmolarity sensor protein; Provisional | 98.9 | |
| TIGR02966 | 333 | phoR_proteo phosphate regulon sensor kinase PhoR. | 98.89 | |
| PRK11360 | 607 | sensory histidine kinase AtoS; Provisional | 98.89 | |
| PRK11073 | 348 | glnL nitrogen regulation protein NR(II); Provision | 98.88 | |
| PRK11100 | 475 | sensory histidine kinase CreC; Provisional | 98.84 | |
| TIGR02916 | 679 | PEP_his_kin putative PEP-CTERM system histidine ki | 98.84 | |
| PRK10841 | 924 | hybrid sensory kinase in two-component regulatory | 98.84 | |
| PRK10337 | 449 | sensor protein QseC; Provisional | 98.84 | |
| KOG1977 | 1142 | consensus DNA mismatch repair protein - MLH3 famil | 98.8 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 98.79 | |
| PRK13557 | 540 | histidine kinase; Provisional | 98.76 | |
| smart00387 | 111 | HATPase_c Histidine kinase-like ATPases. Histidine | 98.71 | |
| PRK13560 | 807 | hypothetical protein; Provisional | 98.63 | |
| cd00075 | 103 | HATPase_c Histidine kinase-like ATPases; This fami | 98.58 | |
| COG3852 | 363 | NtrB Signal transduction histidine kinase, nitroge | 98.57 | |
| COG4251 | 750 | Bacteriophytochrome (light-regulated signal transd | 98.45 | |
| KOG0020 | 785 | consensus Endoplasmic reticulum glucose-regulated | 98.35 | |
| PRK10547 | 670 | chemotaxis protein CheA; Provisional | 98.28 | |
| PRK11644 | 495 | sensory histidine kinase UhpB; Provisional | 98.24 | |
| TIGR01925 | 137 | spIIAB anti-sigma F factor. This model describes t | 98.23 | |
| KOG0019 | 656 | consensus Molecular chaperone (HSP90 family) [Post | 98.19 | |
| PRK10600 | 569 | nitrate/nitrite sensor protein NarX; Provisional | 98.13 | |
| PRK04069 | 161 | serine-protein kinase RsbW; Provisional | 98.07 | |
| PRK10935 | 565 | nitrate/nitrite sensor protein NarQ; Provisional | 98.03 | |
| PRK03660 | 146 | anti-sigma F factor; Provisional | 98.0 | |
| COG5000 | 712 | NtrY Signal transduction histidine kinase involved | 97.98 | |
| COG4192 | 673 | Signal transduction histidine kinase regulating ph | 97.91 | |
| TIGR01924 | 159 | rsbW_low_gc serine-protein kinase RsbW. This model | 97.79 | |
| PRK13559 | 361 | hypothetical protein; Provisional | 97.73 | |
| COG4585 | 365 | Signal transduction histidine kinase [Signal trans | 97.68 | |
| KOG0787 | 414 | consensus Dehydrogenase kinase [Signal transductio | 97.51 | |
| PF14501 | 100 | HATPase_c_5: GHKL domain | 97.34 | |
| COG2972 | 456 | Predicted signal transduction protein with a C-ter | 97.32 | |
| PF13581 | 125 | HATPase_c_2: Histidine kinase-like ATPase domain | 97.25 | |
| COG0643 | 716 | CheA Chemotaxis protein histidine kinase and relat | 97.22 | |
| PF05833 | 455 | FbpA: Fibronectin-binding protein A N-terminus (Fb | 96.83 | |
| COG3850 | 574 | NarQ Signal transduction histidine kinase, nitrate | 96.77 | |
| KOG0355 | 842 | consensus DNA topoisomerase type II [Chromatin str | 96.6 | |
| PRK14810 | 272 | formamidopyrimidine-DNA glycosylase; Provisional | 96.59 | |
| COG3920 | 221 | Signal transduction histidine kinase [Signal trans | 96.38 | |
| COG3851 | 497 | UhpB Signal transduction histidine kinase, glucose | 96.32 | |
| PF06831 | 92 | H2TH: Formamidopyrimidine-DNA glycosylase H2TH dom | 95.96 | |
| COG2172 | 146 | RsbW Anti-sigma regulatory factor (Ser/Thr protein | 94.91 | |
| PRK01103 | 274 | formamidopyrimidine/5-formyluracil/ 5-hydroxymethy | 94.27 | |
| PF00204 | 173 | DNA_gyraseB: DNA gyrase B; InterPro: IPR013506 DNA | 94.16 | |
| PRK13945 | 282 | formamidopyrimidine-DNA glycosylase; Provisional | 94.05 | |
| COG3275 | 557 | LytS Putative regulator of cell autolysis [Signal | 93.73 | |
| COG0099 | 121 | RpsM Ribosomal protein S13 [Translation, ribosomal | 93.68 | |
| TIGR00577 | 272 | fpg formamidopyrimidine-DNA glycosylase (fpg). All | 93.43 | |
| PRK14811 | 269 | formamidopyrimidine-DNA glycosylase; Provisional | 93.05 | |
| cd00822 | 172 | TopoII_Trans_DNA_gyrase TopoIIA_Trans_DNA_gyrase: | 92.92 | |
| PRK10445 | 263 | endonuclease VIII; Provisional | 92.42 | |
| COG4564 | 459 | Signal transduction histidine kinase [Signal trans | 90.69 | |
| PTZ00134 | 154 | 40S ribosomal protein S18; Provisional | 90.64 | |
| TIGR03629 | 144 | arch_S13P archaeal ribosomal protein S13P. This mo | 90.32 | |
| CHL00137 | 122 | rps13 ribosomal protein S13; Validated | 90.28 | |
| TIGR03631 | 113 | bact_S13 30S ribosomal protein S13. This model des | 89.21 | |
| PRK05179 | 122 | rpsM 30S ribosomal protein S13; Validated | 88.98 | |
| COG0266 | 273 | Nei Formamidopyrimidine-DNA glycosylase [DNA repli | 88.36 | |
| PF00416 | 107 | Ribosomal_S13: Ribosomal protein S13/S18; InterPro | 87.86 | |
| PRK04053 | 149 | rps13p 30S ribosomal protein S13P; Reviewed | 86.69 | |
| KOG3311 | 152 | consensus Ribosomal protein S18 [Translation, ribo | 84.11 | |
| cd00329 | 107 | TopoII_MutL_Trans MutL_Trans: transducer domain, h | 80.69 |
| >COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-150 Score=1179.99 Aligned_cols=464 Identities=35% Similarity=0.651 Sum_probs=448.0
Q ss_pred cccccCCHHHHHHhcccccCccCCCchHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEeccccccccccccccccccccc
Q 008575 21 SALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTKL 100 (561)
Q Consensus 21 ~~~~~~S~aEff~~nk~i~Gfdn~~k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~~ 100 (561)
+.++++|+||||++|++|+|||||.++|||||+|||+|||||||+.|+||+|.|+|++++
T Consensus 10 e~~re~SvAEFF~kNk~mlGf~~p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~-------------------- 69 (538)
T COG1389 10 EKFRELSVAEFFRKNKEMLGFDGPIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIG-------------------- 69 (538)
T ss_pred hhhhhcCHHHHHHhCHHhcCCCCchhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecC--------------------
Confidence 359999999999999999999999999999999999999999999999999999999983
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhhhhcccccccc
Q 008575 101 YDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTK 180 (561)
Q Consensus 101 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~iF~r~~~tSK 180 (561)
.++|.+.|+|||||||++.+|++|++++||||
T Consensus 70 ------------------------------------------------~d~y~v~veDNGpGIP~e~IPkvFGk~LygSK 101 (538)
T COG1389 70 ------------------------------------------------KDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSK 101 (538)
T ss_pred ------------------------------------------------CceEEEEEecCCCCCChhHhHHHHHHHhccch
Confidence 68999999999999999999999999999999
Q ss_pred c-ccccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCceEEEEEEEeeccCCCceeeeeccccCCCCCCCcEEEEEec
Q 008575 181 Y-GLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIE 259 (561)
Q Consensus 181 ~-~~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~~~~~~L~id~~kN~p~Il~~e~~~~~~~~~GT~V~V~L~ 259 (561)
| ..+|++||+|||+++|.+||||++|.+++|.|++.++..++.|+|.||+++|+|.|++....+++..||||+|++++.
T Consensus 102 fh~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT~Vel~~~ 181 (538)
T COG1389 102 FHRNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHGTRVELELK 181 (538)
T ss_pred hhhhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCceEEEEEec
Confidence 9 678999999999999999999999999999999988889999999999999999999986777778899999999999
Q ss_pred CCcchhHHH-HHHHHHHHHhhCCCcEEEEEEcccccCcceEEEeccccCCCCCCCcccccCCccccHHHHHHHHHhcCCc
Q 008575 260 GNWTTYRSK-ILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKG 338 (561)
Q Consensus 260 ~n~~~~r~~-I~eyLrr~AIvnP~a~~~l~~~~~~pdg~~~~~f~R~t~~lP~~P~eikpHP~Gvdl~~L~~m~~~t~~~ 338 (561)
++|..++++ +++||++||++||||+|+|. ||||++ +.|+|.+++||++|+|++|||||||+++|++|+.+|+++
T Consensus 182 ~~~~~~~~qgi~eYlkrtaiinPhA~I~l~----dPdG~~-~vf~r~t~~lP~pP~E~kPHP~gvd~~~L~~M~~~T~~~ 256 (538)
T COG1389 182 GVWYRAKRQGIYEYLKRTAIINPHARIVLK----DPDGNL-VVFPRSTDKLPKPPKEIKPHPHGVDLDTLKKMAHRTRRS 256 (538)
T ss_pred ccchhhcccCHHHHHHHHhhcCCceEEEEE----CCCCcE-EEeccchhhCCCCccccCCCCccccHHHHHHHHHHhhhh
Confidence 999877765 99999999999999999999 999998 679999999999999999999999999999999999999
Q ss_pred chHHHhhcccccCCHHHHHHHHhhhCCCCCCCCCcccCC----HHHHHHHHHHHHhCCccCCCCCCcCccchHHHHhhhh
Q 008575 339 TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLT----SQQIVRIHQLFRQAKFDDPSGGCLSPAGEYNLRLGII 414 (561)
Q Consensus 339 tl~~FL~~~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~----~~~~~~l~~~~~~~~~~~P~~~~LsPiGe~~l~~gl~ 414 (561)
||++||+++|+|||.++|+++++. ++|+++..|+.|+ |+|+++|++||++|+||+|||||||||||++|++||+
T Consensus 257 tv~~fL~sef~rig~~ta~e~~e~--~g~~~~~~p~~L~~~~~~eea~~lv~a~~~~~fm~Pptd~LsPIGee~ie~gLk 334 (538)
T COG1389 257 TVREFLVSEFSRIGEKTADELLEY--AGFDPDKKPRELTKKKTREEAEKLVEAFKKMKFMAPPTDGLSPIGEELIEKGLK 334 (538)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHH--hcCCcccCHHHhhcccCHHHHHHHHHHHHhCcccCCCccccCcccHHHHHHHHH
Confidence 999999999999999999999999 6799999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCceEEEEecCcceecCCcEEEEEEeeecCccCCC-CceEEEeeccccccccCCCchhhhhhhcccCccccccCCCC
Q 008575 415 KELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQ-GLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQ 493 (561)
Q Consensus 415 k~~~pefv~~~tr~p~~y~G~PfiVEa~iayGg~~~~~-~~~i~RfANriPLlf~~g~~~it~~~~~~i~W~~Y~i~~~~ 493 (561)
++|+||||+|+||+|.||+||||||||||||||.++.. ++.|||||||||||||+||||+|+ +|++|||++|||+|++
T Consensus 335 ~~~~pefv~avTRkPkvy~G~pFiVEvgiAYGG~i~~~e~~~llRyANrvPLlyd~g~cv~tk-~V~~i~WkrYgl~~~~ 413 (538)
T COG1389 335 SILNPEFVAAVTRKPKVYRGHPFIVEVGIAYGGNIPGGEKPLLLRYANRVPLLYDAGSCVITK-VVESIDWKRYGLDQPD 413 (538)
T ss_pred HhcCchheeeeccCccccCCCceEEEEEeeccCCCCCCcchhhhhhcccCceeeecCcchhhH-hhhhccceecCcCCCC
Confidence 99999999999999999999999999999999987544 799999999999999999999999 9999999999999999
Q ss_pred CceEEEEEeeeCCCCCCCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 008575 494 DKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLSR 561 (561)
Q Consensus 494 ~~~~v~vhi~St~vPf~~~~Ke~ia~~~~EI~~ei~~al~~~~r~L~~~l~r~~~~~~~~~r~~~~~~ 561 (561)
+|++||||||||||||||+|||+|| |+|||++|||+|||+|||+|+.||+||++++++++|.+.+.|
T Consensus 414 aplvvlVhv~St~VPyts~gKqsIa-~vpeIe~Eir~Al~evaRkL~~yLsrk~r~~e~~~K~~~i~k 480 (538)
T COG1389 414 APLVVLVHVASTNVPYTSAGKQSIA-DVPEIENEIRLALMEVARKLKLYLSRKRREMEERKKRKTIEK 480 (538)
T ss_pred CcEEEEEEecccCCCcCCccchhcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 799999999999999999999999999999999999988753
|
|
| >TIGR01052 top6b DNA topoisomerase VI, B subunit | Back alignment and domain information |
|---|
| >PRK04184 DNA topoisomerase VI subunit B; Validated | Back alignment and domain information |
|---|
| >PRK14868 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >PRK14867 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >PF09239 Topo-VIb_trans: Topoisomerase VI B subunit, transducer; InterPro: IPR015320 DNA topoisomerases regulate the number of topological links between two DNA strands (i | Back alignment and domain information |
|---|
| >cd00823 TopoIIB_Trans TopoIIB_Trans: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIB family of DNA topoisomerases similar to Sulfolobus shibatae topoisomerase VI (topoVI) | Back alignment and domain information |
|---|
| >PRK05559 DNA topoisomerase IV subunit B; Reviewed | Back alignment and domain information |
|---|
| >PRK05644 gyrB DNA gyrase subunit B; Validated | Back alignment and domain information |
|---|
| >COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >smart00433 TOP2c TopoisomeraseII | Back alignment and domain information |
|---|
| >PRK00095 mutL DNA mismatch repair protein; Reviewed | Back alignment and domain information |
|---|
| >TIGR01059 gyrB DNA gyrase, B subunit | Back alignment and domain information |
|---|
| >TIGR00585 mutl DNA mismatch repair protein MutL | Back alignment and domain information |
|---|
| >TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial | Back alignment and domain information |
|---|
| >PRK14939 gyrB DNA gyrase subunit B; Provisional | Back alignment and domain information |
|---|
| >TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive | Back alignment and domain information |
|---|
| >KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PTZ00109 DNA gyrase subunit b; Provisional | Back alignment and domain information |
|---|
| >PRK05218 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >PHA02569 39 DNA topoisomerase II large subunit; Provisional | Back alignment and domain information |
|---|
| >PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B | Back alignment and domain information |
|---|
| >PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional | Back alignment and domain information |
|---|
| >TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL | Back alignment and domain information |
|---|
| >PLN03128 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK09303 adaptive-response sensory kinase; Validated | Back alignment and domain information |
|---|
| >PRK14083 HSP90 family protein; Provisional | Back alignment and domain information |
|---|
| >COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11006 phoR phosphate regulon sensor protein; Provisional | Back alignment and domain information |
|---|
| >COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK15053 dpiB sensor histidine kinase DpiB; Provisional | Back alignment and domain information |
|---|
| >PRK10364 sensor protein ZraS; Provisional | Back alignment and domain information |
|---|
| >PRK11086 sensory histidine kinase DcuS; Provisional | Back alignment and domain information |
|---|
| >PRK10755 sensor protein BasS/PmrB; Provisional | Back alignment and domain information |
|---|
| >PRK10604 sensor protein RstB; Provisional | Back alignment and domain information |
|---|
| >PTZ00130 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >PRK10549 signal transduction histidine-protein kinase BaeS; Provisional | Back alignment and domain information |
|---|
| >PRK11091 aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
| >PLN03237 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional | Back alignment and domain information |
|---|
| >PTZ00108 DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >PRK13837 two-component VirA-like sensor kinase; Provisional | Back alignment and domain information |
|---|
| >PRK15347 two component system sensor kinase SsrA; Provisional | Back alignment and domain information |
|---|
| >PRK11107 hybrid sensory histidine kinase BarA; Provisional | Back alignment and domain information |
|---|
| >COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR01386 cztS_silS_copS heavy metal sensor kinase | Back alignment and domain information |
|---|
| >PRK10815 sensor protein PhoQ; Provisional | Back alignment and domain information |
|---|
| >PRK11466 hybrid sensory histidine kinase TorS; Provisional | Back alignment and domain information |
|---|
| >PRK09470 cpxA two-component sensor protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase | Back alignment and domain information |
|---|
| >PRK10490 sensor protein KdpD; Provisional | Back alignment and domain information |
|---|
| >PRK09835 sensor kinase CusS; Provisional | Back alignment and domain information |
|---|
| >TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS | Back alignment and domain information |
|---|
| >PRK09467 envZ osmolarity sensor protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR | Back alignment and domain information |
|---|
| >PRK11360 sensory histidine kinase AtoS; Provisional | Back alignment and domain information |
|---|
| >PRK11073 glnL nitrogen regulation protein NR(II); Provisional | Back alignment and domain information |
|---|
| >PRK11100 sensory histidine kinase CreC; Provisional | Back alignment and domain information |
|---|
| >TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase | Back alignment and domain information |
|---|
| >PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
| >PRK10337 sensor protein QseC; Provisional | Back alignment and domain information |
|---|
| >KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
| >PRK13557 histidine kinase; Provisional | Back alignment and domain information |
|---|
| >smart00387 HATPase_c Histidine kinase-like ATPases | Back alignment and domain information |
|---|
| >PRK13560 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK10547 chemotaxis protein CheA; Provisional | Back alignment and domain information |
|---|
| >PRK11644 sensory histidine kinase UhpB; Provisional | Back alignment and domain information |
|---|
| >TIGR01925 spIIAB anti-sigma F factor | Back alignment and domain information |
|---|
| >KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK10600 nitrate/nitrite sensor protein NarX; Provisional | Back alignment and domain information |
|---|
| >PRK04069 serine-protein kinase RsbW; Provisional | Back alignment and domain information |
|---|
| >PRK10935 nitrate/nitrite sensor protein NarQ; Provisional | Back alignment and domain information |
|---|
| >PRK03660 anti-sigma F factor; Provisional | Back alignment and domain information |
|---|
| >COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR01924 rsbW_low_gc serine-protein kinase RsbW | Back alignment and domain information |
|---|
| >PRK13559 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF14501 HATPase_c_5: GHKL domain | Back alignment and domain information |
|---|
| >COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13581 HATPase_c_2: Histidine kinase-like ATPase domain | Back alignment and domain information |
|---|
| >COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF05833 FbpA: Fibronectin-binding protein A N-terminus (FbpA); InterPro: IPR008616 This family consists of the N-terminal region of the prokaryotic fibronectin-binding protein, the C-terminal region is IPR008532 from INTERPRO | Back alignment and domain information |
|---|
| >COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PRK14810 formamidopyrimidine-DNA glycosylase; Provisional | Back alignment and domain information |
|---|
| >COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF06831 H2TH: Formamidopyrimidine-DNA glycosylase H2TH domain; InterPro: IPR015886 This entry represents a helix-2turn-helix DNA-binding domain found in DNA glycosylase/AP lyase enzymes, which are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents | Back alignment and domain information |
|---|
| >COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated | Back alignment and domain information |
|---|
| >PF00204 DNA_gyraseB: DNA gyrase B; InterPro: IPR013506 DNA topoisomerases regulate the number of topological links between two DNA strands (i | Back alignment and domain information |
|---|
| >PRK13945 formamidopyrimidine-DNA glycosylase; Provisional | Back alignment and domain information |
|---|
| >COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG0099 RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR00577 fpg formamidopyrimidine-DNA glycosylase (fpg) | Back alignment and domain information |
|---|
| >PRK14811 formamidopyrimidine-DNA glycosylase; Provisional | Back alignment and domain information |
|---|
| >cd00822 TopoII_Trans_DNA_gyrase TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E | Back alignment and domain information |
|---|
| >PRK10445 endonuclease VIII; Provisional | Back alignment and domain information |
|---|
| >COG4564 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PTZ00134 40S ribosomal protein S18; Provisional | Back alignment and domain information |
|---|
| >TIGR03629 arch_S13P archaeal ribosomal protein S13P | Back alignment and domain information |
|---|
| >CHL00137 rps13 ribosomal protein S13; Validated | Back alignment and domain information |
|---|
| >TIGR03631 bact_S13 30S ribosomal protein S13 | Back alignment and domain information |
|---|
| >PRK05179 rpsM 30S ribosomal protein S13; Validated | Back alignment and domain information |
|---|
| >COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF00416 Ribosomal_S13: Ribosomal protein S13/S18; InterPro: IPR001892 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
| >PRK04053 rps13p 30S ribosomal protein S13P; Reviewed | Back alignment and domain information |
|---|
| >KOG3311 consensus Ribosomal protein S18 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 561 | ||||
| 1mu5_A | 471 | Structure Of Topoisomerase Subunit Length = 471 | 4e-71 | ||
| 1z5a_A | 469 | Topoisomerase Vi-B, Adp-Bound Dimer Form Length = 4 | 4e-71 | ||
| 2zbk_B | 530 | Crystal Structure Of An Intact Type Ii Dna Topoisom | 6e-71 | ||
| 1mx0_A | 472 | Structure Of Topoisomerase Subunit Length = 472 | 5e-70 | ||
| 1z59_A | 469 | Topoisomerase Vi-B, Adp-Bound Monomer Form Length = | 5e-70 | ||
| 2q2e_B | 621 | Crystal Structure Of The Topoisomerase Vi Holoenzym | 4e-46 |
| >pdb|1MU5|A Chain A, Structure Of Topoisomerase Subunit Length = 471 | Back alignment and structure |
|
| >pdb|1Z5A|A Chain A, Topoisomerase Vi-B, Adp-Bound Dimer Form Length = 469 | Back alignment and structure |
| >pdb|2ZBK|B Chain B, Crystal Structure Of An Intact Type Ii Dna Topoisomerase: Insights Into Dna Transfer Mechanisms Length = 530 | Back alignment and structure |
| >pdb|1MX0|A Chain A, Structure Of Topoisomerase Subunit Length = 472 | Back alignment and structure |
| >pdb|1Z59|A Chain A, Topoisomerase Vi-B, Adp-Bound Monomer Form Length = 469 | Back alignment and structure |
| >pdb|2Q2E|B Chain B, Crystal Structure Of The Topoisomerase Vi Holoenzyme From Methanosarcina Mazei Length = 621 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Length = 471 | Back alignment and structure |
|---|
Score = 413 bits (1062), Expect = e-140
Identities = 176/544 (32%), Positives = 276/544 (50%), Gaps = 80/544 (14%)
Query: 20 ESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEI 79
+ SPAEFF N +AGF NP ++LY TVREL+ENSL
Sbjct: 5 KEKFTSLSPAEFFKRNPELAGFPNPARALYQTVRELIENSL------------------- 45
Query: 80 GKSKFNSMIGLVDRERVDTKLYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSA 139
+ G++ ++ L DD
Sbjct: 46 ---DATDVHGILPNIKITIDLIDDAR---------------------------------- 68
Query: 140 TKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALI 199
Y+V DNG G+P ++PN FGRVL +KY +QTRG +GLG K A++
Sbjct: 69 ----------QIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVL 118
Query: 200 WSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIE 259
+S+M PIEI +S + I KL IDI++N P + EN +HG + + I
Sbjct: 119 YSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIP 178
Query: 260 GNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHH 319
G+W +S+I Y+++ +ITPYA+F+FK + + R T+ +P P E K H
Sbjct: 179 GDWPKAKSRIYEYIKRTYIITPYAEFIFK-----DPEGNVTYYPRLTNKIPKPPQEVKPH 233
Query: 320 PSSVDLLLIKGLIAETSKG-TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTS 378
P VD IK LI + T+ +FL +EF +IG + A++++ G P VK+LT
Sbjct: 234 PYGVDREEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAG--LKPNKKVKNLTE 291
Query: 379 QQIVRIHQLFRQAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPF 437
++I R+ + F++ + F PS LS GE + LG+ K +PD A+ + + ++GHPF
Sbjct: 292 EEITRLVETFKKYEDFRSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPF 351
Query: 438 IVEAGVSVGGK-DVKQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKI 496
IVEAGV+ GG V + + R+AN+IPL++++ DV+ + ++ ++W Y I Q ++
Sbjct: 352 IVEAGVAFGGSIPVGEEPIVLRYANKIPLIYDEKSDVIWK-VVEELDWKRYGIESDQYQM 410
Query: 497 GVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERK 556
V V + STKIP+K GKE I + +I +K+A+ + +LK + K +EQ+ +K
Sbjct: 411 VVMVHLCSTKIPYKSAGKESIAEVE-DIEKEIKNALMEVARKLKQYLSEK--RKEQEAKK 467
Query: 557 RNLS 560
+ L+
Sbjct: 468 KLLA 471
|
| >2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Length = 530 | Back alignment and structure |
|---|
| >2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 561 | |||
| 1mu5_A | 471 | Type II DNA topoisomerase VI subunit B; GHKL ATPas | 100.0 | |
| 2zbk_B | 530 | Type 2 DNA topoisomerase 6 subunit B; DNA binding | 100.0 | |
| 2q2e_B | 621 | Type 2 DNA topoisomerase 6 subunit B; DNA-binding, | 100.0 | |
| 1kij_A | 390 | DNA gyrase subunit B; topoisomerase, gyrase B-coum | 99.87 | |
| 1s16_A | 390 | Topoisomerase IV subunit B; two-domain protein com | 99.83 | |
| 1ei1_A | 391 | DNA gyrase B, GYRB; ATPase domain, dimer, isomeras | 99.83 | |
| 3na3_A | 348 | DNA mismatch repair protein MLH1; MUTL protein hom | 99.77 | |
| 1b63_A | 333 | MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A | 99.75 | |
| 1zxm_A | 400 | TOPO IIA ATPase, DNA topoisomerase II, alpha isozy | 99.74 | |
| 4duh_A | 220 | DNA gyrase subunit B; structure-based drug design, | 99.73 | |
| 3h4l_A | 367 | DNA mismatch repair protein PMS1; ATP binding, DNA | 99.73 | |
| 1h7s_A | 365 | PMS1 protein homolog 2; DNA repair, GHL ATPase, mi | 99.72 | |
| 4emv_A | 226 | DNA topoisomerase IV, B subunit; protein-inhibitor | 99.7 | |
| 3fv5_A | 201 | DNA topoisomerase 4 subunit B; topoisomerase IV B | 99.69 | |
| 3cwv_A | 369 | DNA gyrase, B subunit, truncated; structural genom | 99.68 | |
| 3lnu_A | 408 | Topoisomerase IV subunit B; PARE, ATP-binding, nuc | 99.67 | |
| 1pvg_A | 418 | DNA topoisomerase II; GHKL ATPase domain; HET: DNA | 99.67 | |
| 3t0h_A | 228 | Heat shock protein HSP 90-alpha; chaperone, ATPase | 99.61 | |
| 3o0i_A | 256 | HSP90AA1 protein; HSP90 heat-shock proteins, chape | 99.57 | |
| 2wer_A | 220 | ATP-dependent molecular chaperone HSP82; ATPase, A | 99.54 | |
| 2ior_A | 235 | Chaperone protein HTPG; heat shock protein, HSP90; | 99.53 | |
| 1yc1_A | 264 | HSP 86, heat shock protein HSP 90-alpha; cell-cycl | 99.5 | |
| 1y4s_A | 559 | Chaperone protein HTPG; HSP90, molecular chaperone | 99.44 | |
| 2c2a_A | 258 | Sensor histidine kinase; phosphotransfer, PHOQ, se | 99.43 | |
| 2gqp_A | 236 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, | 99.42 | |
| 3nmq_A | 239 | Heat shock protein HSP 90-beta; ATPase, chaperone- | 99.4 | |
| 3peh_A | 281 | Endoplasmin homolog; structural genomics, structur | 99.39 | |
| 2ioq_A | 624 | Chaperone protein HTPG; heat shock protein, HSP90; | 99.39 | |
| 1qy5_A | 269 | Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N | 99.39 | |
| 1gkz_A | 388 | [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] | 99.34 | |
| 2q8g_A | 407 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 99.34 | |
| 2e0a_A | 394 | Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP | 99.34 | |
| 2btz_A | 394 | Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo | 99.31 | |
| 2cg9_A | 677 | ATP-dependent molecular chaperone HSP82; chaperone | 99.3 | |
| 1y8o_A | 419 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 99.3 | |
| 3ied_A | 272 | Heat shock protein; HSP90, chaperone, structural g | 99.3 | |
| 1id0_A | 152 | PHOQ histidine kinase; PHOQ/PHOP, signal transduct | 99.3 | |
| 1ysr_A | 150 | Sensor-type histidine kinase PRRB; ATP-binding dom | 99.29 | |
| 2o1u_A | 666 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, | 99.29 | |
| 3sl2_A | 177 | Sensor histidine kinase YYCG; ATP binding, intact | 99.25 | |
| 1bxd_A | 161 | ENVZ(290-450), protein (osmolarity sensor protein | 99.24 | |
| 3ttz_A | 198 | DNA gyrase subunit B; protein-inhibitor complex, A | 99.21 | |
| 3a0y_A | 152 | Sensor protein; ATP-LID, kinase, phosphoprotein, t | 99.19 | |
| 1i58_A | 189 | Chemotaxis protein CHEA; beta-alpha sandwich, sign | 99.19 | |
| 1r62_A | 160 | Nitrogen regulation protein NR(II); PII, histidine | 99.19 | |
| 3a0r_A | 349 | Sensor protein; four helix bundle, PAS fold, kinas | 99.16 | |
| 3d36_A | 244 | Sporulation kinase B; GHKL ATPase, four helix bund | 99.16 | |
| 4ew8_A | 268 | Sensor protein DIVL; signal transduction, two-comp | 99.15 | |
| 3jz3_A | 222 | Sensor protein QSEC; helix-turn-helix, kinase doma | 99.12 | |
| 1b3q_A | 379 | Protein (chemotaxis protein CHEA); histine kinase, | 99.01 | |
| 1th8_A | 145 | Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s | 98.98 | |
| 3ehg_A | 128 | Sensor kinase (YOCF protein); GHL ATPase domain, t | 98.97 | |
| 4fpp_A | 247 | Phosphotransferase; four helix bundle, bergerat fo | 98.93 | |
| 4gfh_A | 1177 | DNA topoisomerase 2; topoisomerase, protein-DNA co | 98.91 | |
| 3ehh_A | 218 | Sensor kinase (YOCF protein); four-helix bundle, G | 98.91 | |
| 3zxq_A | 124 | Hypoxia sensor histidine kinase response regulato; | 98.76 | |
| 3zxo_A | 129 | Redox sensor histidine kinase response regulator; | 98.74 | |
| 3ke6_A | 399 | Protein RV1364C/MT1410; anti-sigma factor, anti-si | 96.97 | |
| 1ixm_A | 192 | SPO0B, protein (sporulation response regulatory pr | 95.69 | |
| 3r8n_M | 114 | 30S ribosomal protein S13; protein biosynthesis, R | 95.32 | |
| 3twl_A | 310 | Formamidopyrimidine-DNA glycosylase 1; helix two t | 94.41 | |
| 3u6p_A | 273 | Formamidopyrimidine-DNA glycosylase; DNA glycosyla | 94.31 | |
| 1k82_A | 268 | Formamidopyrimidine-DNA glycosylase; protein-DNA c | 93.79 | |
| 1k3x_A | 262 | Endonuclease VIII; hydrolase/DNA, hydrolase-DNA co | 93.66 | |
| 2xzf_A | 271 | Formamidopyrimidine-DNA glycosylase; hydrolase-DNA | 93.04 | |
| 3iz6_M | 152 | 40S ribosomal protein S18 (S13P); eukaryotic ribos | 93.01 | |
| 1ee8_A | 266 | MUTM (FPG) protein; beta sandwich, zinc finger, he | 92.94 | |
| 3u5c_S | 146 | 40S ribosomal protein S18-A, 40S ribosomal protein | 92.92 | |
| 3w0f_A | 287 | Endonuclease 8-like 3; helix two turns helix, zinc | 92.24 | |
| 3j20_O | 148 | 30S ribosomal protein S13P; archaea, archaeal, KIN | 92.06 | |
| 2xzm_M | 155 | RPS18E; ribosome, translation; 3.93A {Tetrahymena | 91.73 | |
| 2vqe_M | 126 | 30S ribosomal protein S13, 30S ribosomal protein S | 91.56 | |
| 3vk8_A | 295 | Probable formamidopyrimidine-DNA glycosylase; DNA | 86.83 | |
| 3doa_A | 288 | Fibrinogen binding protein; structural genomics, M | 83.45 |
| >1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-115 Score=939.99 Aligned_cols=463 Identities=38% Similarity=0.673 Sum_probs=418.7
Q ss_pred ccccccCCHHHHHHhcccccCccCCCchHHHHHHHHHHcHHHHHhhcCCCCeEEEEEEEecccccccccccccccccccc
Q 008575 20 ESALKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDTK 99 (561)
Q Consensus 20 ~~~~~~~S~aEff~~nk~i~Gfdn~~k~L~t~irelVeNslDa~e~~~~lP~I~i~i~~~~~~~~n~~~~~~~~~r~d~~ 99 (561)
...++++|++|||.+|..+++|+++...|.++|.|||+||+||+.+.+.+|.|.|++....+
T Consensus 5 ~~~~k~is~~eff~~~~~~~~~~~d~~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~------------------ 66 (471)
T 1mu5_A 5 KEKFTSLSPAEFFKRNPELAGFPNPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDD------------------ 66 (471)
T ss_dssp ------CCHHHHHHHCGGGTTCSSHHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEET------------------
T ss_pred HHHHhhcCHHHhhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCC------------------
Confidence 45789999999999999999999998999999999999999999988878899999977520
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCcccccCCCCCCCCCeeEEEEEeCCCCCCcCChhhhhccccccc
Q 008575 100 LYDDYETEKARERRLAKEARAQELQAKNAALGKKVKEPSATKGAKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGT 179 (561)
Q Consensus 100 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~DNG~GI~~e~l~~iF~r~~~tS 179 (561)
..+.+.|+|+|||+||++++++.+|++|++++
T Consensus 67 ------------------------------------------------~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~ts 98 (471)
T 1mu5_A 67 ------------------------------------------------ARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSS 98 (471)
T ss_dssp ------------------------------------------------TTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-
T ss_pred ------------------------------------------------cCcEEEEEEEECCCCCCHHHHHHHhccccccc
Confidence 13678999999999999999999999998899
Q ss_pred ccccccCCCcceeehHhhHHHHHHhCCccEEEEeeeCCCceEEEEEEEeeccCCCceeeeeccccCCCCCCCcEEEEEec
Q 008575 180 KYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRSHNFISFCKLDIDIHRNIPHVHLHEKRENKDRWHGAEIQVVIE 259 (561)
Q Consensus 180 K~~~~~s~G~~GlGL~la~l~s~l~~Gg~I~V~Sk~~g~~~~~~~~L~id~~kN~p~Il~~e~~~~~~~~~GT~V~V~L~ 259 (561)
|....++.|++|+||+++..+++.+.|.+++|.|+..+....+.|.|.++...+.+.+....+.+....++||+|+|.+.
T Consensus 99 k~~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~l~ 178 (471)
T 1mu5_A 99 KYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIP 178 (471)
T ss_dssp CCCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEECCTTCCEEEEEEEEE
T ss_pred ccccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCcccccccccCCCCCCCEEEEEEEc
Confidence 87544567889999999999999875544999999855544678888888777777776655442235689999999998
Q ss_pred CCcchhHHHHHHHHHHHHhhCCCcEEEEEEcccccCcceEEEeccccCCCCCCCcccccCCccccHHHHHHHHHhcCCc-
Q 008575 260 GNWTTYRSKILHYMRQMAVITPYAQFLFKFVSEVAEKNVTIRFSRRTDVMPPVPVETKHHPSSVDLLLIKGLIAETSKG- 338 (561)
Q Consensus 260 ~n~~~~r~~I~eyLrr~AIvnP~a~~~l~~~~~~pdg~~~~~f~R~t~~lP~~P~eikpHP~Gvdl~~L~~m~~~t~~~- 338 (561)
.+|......|.++|+++|+.||+++|.|. +++++ .+.|.|.++.+|.+|.+++|||+|+|++.+++|+..++..
T Consensus 179 ~~~~e~~~~I~~~l~~~al~~p~v~i~l~----~~~~~-~~~~~r~~~~lp~~~~~~~p~~~G~~l~~~~~~~~~~~~~~ 253 (471)
T 1mu5_A 179 GDWPKAKSRIYEYIKRTYIITPYAEFIFK----DPEGN-VTYYPRLTNKIPKPPQEVKPHPYGVDREEIKILINNLKRDY 253 (471)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTCEEEEE----CTTCC-EEEECCCCCCCCCCCCCCCCCGGGCCHHHHHHHSTTCSSCC
T ss_pred CCcchHHHHHHHHHHHHHhHCCCeEEEEE----ECCce-EEEecccccccCCccceeecCCCchhHHHHHHHHHhcCCCc
Confidence 88876667899999999999999999998 66555 4889999999999999999999999999999999999998
Q ss_pred chHHHhhcccccCCHHHHHHHHhhhCCCCCCCCCcccCCHHHHHHHHHHHHhCC-ccCCCCCCcCccchHHHHhhhhhhc
Q 008575 339 TLLQFLQHEFVNIGKSLAERLIGEMGPEFSPKMAVKSLTSQQIVRIHQLFRQAK-FDDPSGGCLSPAGEYNLRLGIIKEL 417 (561)
Q Consensus 339 tl~~FL~~~f~~v~~~~a~~i~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~~-~~~P~~~~LsPiGe~~l~~gl~k~~ 417 (561)
+|.+||+++|+|||.++|++||+. ++|+++++|++|+++|+.+|+++||+++ |++||++||||||||+|++||+|+|
T Consensus 254 ~~~~fl~~~f~~v~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~lspig~~~~~~g~~~~~ 331 (471)
T 1mu5_A 254 TIKEFLVNEFQSIGDTTADKILEL--AGLKPNKKVKNLTEEEITRLVETFKKYEDFRSPSADSLSVIGEDLIELGLKKIF 331 (471)
T ss_dssp BHHHHHTTSSSSCCHHHHHHHHHH--TTCCTTSBGGGCCTTHHHHHHHHHHHCCCCCCCCSTTCCCCCHHHHHHHHHHHH
T ss_pred chHHhhhccccccCHHHHHHHHHh--cCCCCCCChhhcCHHHHHHHHHHHHhccCccCCCccccCcCCHHHHHhhhhhcc
Confidence 999999999999999999999998 6899999999999999999999999998 9999999999999999999999999
Q ss_pred CCceEEEEecCcceecCCcEEEEEEeeecCccC-CCCceEEEeeccccccccCCCchhhhhhhcccCccccccCCCCCce
Q 008575 418 HPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDV-KQGLNIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKI 496 (561)
Q Consensus 418 ~pefv~~~tr~p~~y~G~PfiVEa~iayGg~~~-~~~~~i~RfANriPLlf~~g~~~it~~~~~~i~W~~Y~i~~~~~~~ 496 (561)
+|||++++||+|+||+||||||||||||||++. .++++|||||||||||||+||||+|+ +|++|||++|||+++.+|+
T Consensus 332 ~~~f~~~~~r~~~~~~g~pf~ve~~~a~gg~~~~~~~~~~~r~anr~pl~~~~~~~~~~~-~~~~~~w~~y~~~~~~~~~ 410 (471)
T 1mu5_A 332 NPDFAASITRKPKAYQGHPFIVEAGVAFGGSIPVGEEPIVLRYANKIPLIYDEKSDVIWK-VVEELDWKRYGIESDQYQM 410 (471)
T ss_dssp CCSEEEEEECCCEEETTEEEEEEEEEEESTTSCCBSSCEEEEEETTEEECSCGGGSHHHH-HHHHSCGGGGTCCSSCBCE
T ss_pred CceEEEEEecCCceecCCCEEEEEEeeccCCCCCCCCceEEEEeccCceeecCCcchhhh-hhccCChhhcCcCCCCCCE
Confidence 999999999999999999999999999999986 55899999999999999999999999 9999999999999999999
Q ss_pred EEEEEeeeCCCCCCCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008575 497 GVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKR 557 (561)
Q Consensus 497 ~v~vhi~St~vPf~~~~Ke~ia~~~~EI~~ei~~al~~~~r~L~~~l~r~~~~~~~~~r~~ 557 (561)
+||||||||||||||+|||+|| |+|||++||++|||+|||+|+.||+||++++++++|++
T Consensus 411 ~~~v~i~st~vp~~~~~k~~i~-~~~ei~~ei~~a~~~~~r~l~~~~~~~~~~~~~~~~~~ 470 (471)
T 1mu5_A 411 VVMVHLCSTKIPYKSAGKESIA-EVEDIEKEIKNALMEVARKLKQYLSEKRKEQEAKKKLL 470 (471)
T ss_dssp EEEEEEEESSCCBSSTTCCCBC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEeccCCCCcCCCCccccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence 9999999999999999999999 79999999999999999999999999999999999875
|
| >2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} | Back alignment and structure |
|---|
| >2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* | Back alignment and structure |
|---|
| >1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* | Back alignment and structure |
|---|
| >4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* | Back alignment and structure |
|---|
| >3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* | Back alignment and structure |
|---|
| >4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* | Back alignment and structure |
|---|
| >3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* | Back alignment and structure |
|---|
| >3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} | Back alignment and structure |
|---|
| >3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* | Back alignment and structure |
|---|
| >1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* | Back alignment and structure |
|---|
| >3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... | Back alignment and structure |
|---|
| >3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* | Back alignment and structure |
|---|
| >2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A | Back alignment and structure |
|---|
| >2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} | Back alignment and structure |
|---|
| >1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* | Back alignment and structure |
|---|
| >1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A | Back alignment and structure |
|---|
| >2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* | Back alignment and structure |
|---|
| >2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* | Back alignment and structure |
|---|
| >3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 | Back alignment and structure |
|---|
| >3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* | Back alignment and structure |
|---|
| >2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A | Back alignment and structure |
|---|
| >1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* | Back alignment and structure |
|---|
| >1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* | Back alignment and structure |
|---|
| >2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A | Back alignment and structure |
|---|
| >2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* | Back alignment and structure |
|---|
| >2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* | Back alignment and structure |
|---|
| >2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* | Back alignment and structure |
|---|
| >3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A | Back alignment and structure |
|---|
| >1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A | Back alignment and structure |
|---|
| >2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A | Back alignment and structure |
|---|
| >3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 | Back alignment and structure |
|---|
| >3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* | Back alignment and structure |
|---|
| >3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A | Back alignment and structure |
|---|
| >1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* | Back alignment and structure |
|---|
| >1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 | Back alignment and structure |
|---|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} | Back alignment and structure |
|---|
| >3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
| >4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} | Back alignment and structure |
|---|
| >3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
| >1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A | Back alignment and structure |
|---|
| >1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* | Back alignment and structure |
|---|
| >3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} | Back alignment and structure |
|---|
| >4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A | Back alignment and structure |
|---|
| >4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* | Back alignment and structure |
|---|
| >3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A | Back alignment and structure |
|---|
| >3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A | Back alignment and structure |
|---|
| >3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ... | Back alignment and structure |
|---|
| >1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 | Back alignment and structure |
|---|
| >1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A* | Back alignment and structure |
|---|
| >2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A* | Back alignment and structure |
|---|
| >3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
| >1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 | Back alignment and structure |
|---|
| >3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m | Back alignment and structure |
|---|
| >3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus} | Back alignment and structure |
|---|
| >3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} | Back alignment and structure |
|---|
| >2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M | Back alignment and structure |
|---|
| >2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ... | Back alignment and structure |
|---|
| >3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A* | Back alignment and structure |
|---|
| >3doa_A Fibrinogen binding protein; structural genomics, MCSG., protein structure initiative, midwest center for structural genomics; 2.81A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 561 | ||||
| d2hkja2 | 164 | d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {A | 7e-65 | |
| d2hkja3 | 219 | d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {A | 2e-23 | |
| d2hkja3 | 219 | d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {A | 3e-12 | |
| d2hkja1 | 78 | a.156.1.3 (A:229-306) Topoisomerase VI-B subunit m | 8e-10 | |
| d1h7sa2 | 203 | d.122.1.2 (A:29-231) DNA mismatch repair protein P | 3e-04 |
| >d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: DNA gyrase/MutL, second domain domain: Topoisomerase VI-B subunit species: Archaeon Sulfolobus shibatae [TaxId: 2286]
Score = 206 bits (527), Expect = 7e-65
Identities = 59/166 (35%), Positives = 99/166 (59%), Gaps = 5/166 (3%)
Query: 396 PSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGK-DVKQGL 454
PS LS GE + LG+ K +PD A+ + + ++GHPFIVEAGV+ GG V +
Sbjct: 3 PSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGSIPVGEEP 62
Query: 455 NIFRFANRIPLLFEQGGDVVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPFKGTGK 514
+ R+AN+IPL++++ DV+ + ++ ++W Y I Q ++ V V + STKIP+K GK
Sbjct: 63 IVLRYANKIPLIYDEKSDVIWK-VVEELDWKRYGIESDQYQMVVMVHLCSTKIPYKSAGK 121
Query: 515 EYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQQERKRNLS 560
E I + +I +K+A+ + +LK + K +EQ+ +K+ L+
Sbjct: 122 ESIAEVE-DIEKEIKNALMEVARKLKQYLSEK--RKEQEAKKKLLA 164
|
| >d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 219 | Back information, alignment and structure |
|---|
| >d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 219 | Back information, alignment and structure |
|---|
| >d2hkja1 a.156.1.3 (A:229-306) Topoisomerase VI-B subunit middle domain {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 78 | Back information, alignment and structure |
|---|
| >d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 203 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 561 | |||
| d2hkja2 | 164 | Topoisomerase VI-B subunit {Archaeon Sulfolobus sh | 100.0 | |
| d2hkja3 | 219 | Topoisomerase VI-B subunit {Archaeon Sulfolobus sh | 100.0 | |
| d1h7sa2 | 203 | DNA mismatch repair protein PMS2 {Human (Homo sapi | 99.82 | |
| d1b63a2 | 218 | DNA mismatch repair protein MutL {Escherichia coli | 99.81 | |
| d2c2aa2 | 161 | Sensor histidine kinase TM0853 {Thermotoga maritim | 99.62 | |
| d2hkja1 | 78 | Topoisomerase VI-B subunit middle domain {Archaeon | 99.57 | |
| d1gkza2 | 193 | Branched-chain alpha-ketoacid dehydrogenase kinase | 99.56 | |
| d1ysra1 | 148 | Sensor-type histidine kinase PrrB {Mycobacterium t | 99.54 | |
| d1bxda_ | 161 | Histidine kinase domain of the osmosensor EnvZ {Es | 99.52 | |
| d1id0a_ | 146 | Histidine kinase PhoQ domain {Escherichia coli [Ta | 99.52 | |
| d1jm6a2 | 190 | Pyruvate dehydrogenase kinase {Rat (Rattus norvegi | 99.52 | |
| d2iwxa1 | 213 | HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.35 | |
| d1kija2 | 212 | DNA gyrase B {Thermus thermophilus [TaxId: 274]} | 99.35 | |
| d1ei1a2 | 219 | DNA gyrase B {Escherichia coli [TaxId: 562]} | 99.32 | |
| d1r62a_ | 156 | Nitrogen regulation protein NtrB, C-terminal domai | 99.31 | |
| d1uyla_ | 208 | HSP90 {Human (Homo sapiens) [TaxId: 9606]} | 99.3 | |
| d2gqpa1 | 227 | HSP90 {Dog (Canis familiaris) [TaxId: 9615]} | 99.28 | |
| d1pvga2 | 239 | DNA topoisomerase II {Baker's yeast (Saccharomyces | 99.24 | |
| d1s14a_ | 168 | Topoisomerase IV subunit B {Escherichia coli [TaxI | 99.02 | |
| d1ixma_ | 179 | Sporulation response regulatory protein Spo0B {Bac | 98.8 | |
| d1th8a_ | 139 | Anti-sigma factor spoIIab {Bacillus stearothermoph | 98.67 | |
| d1y8oa2 | 125 | Pyruvate dehydrogenase kinase {Human (Homo sapiens | 98.66 | |
| d1i58a_ | 189 | Histidine kinase CheA {Thermotoga maritima [TaxId: | 97.21 | |
| d1k82a1 | 88 | DNA repair protein MutM (Fpg) {Escherichia coli [T | 96.63 | |
| d1tdza1 | 88 | DNA repair protein MutM (Fpg) {Lactococcus lactis | 96.52 | |
| d1ee8a1 | 89 | DNA repair protein MutM (Fpg) {Thermus thermophilu | 96.48 | |
| d1r2za1 | 94 | DNA repair protein MutM (Fpg) {Bacillus stearother | 96.29 | |
| d1k3xa1 | 89 | Endonuclease VIII {Escherichia coli [TaxId: 562]} | 95.67 | |
| d1kija1 | 172 | DNA gyrase B {Thermus thermophilus [TaxId: 274]} | 92.96 | |
| d2uubm1 | 125 | Ribosomal protein S13 {Thermus thermophilus [TaxId | 91.66 | |
| d2gy9m1 | 114 | Ribosomal protein S13 {Escherichia coli [TaxId: 56 | 90.44 | |
| d2i0za2 | 169 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 88.76 | |
| d1ei1a1 | 172 | DNA gyrase B {Escherichia coli [TaxId: 562]} | 86.37 | |
| d2gqfa2 | 148 | Hypothetical protein HI0933 {Haemophilus influenza | 83.89 | |
| d1s16a1 | 167 | Topoisomerase IV subunit B {Escherichia coli [TaxI | 81.4 |
| >d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: DNA gyrase/MutL, second domain domain: Topoisomerase VI-B subunit species: Archaeon Sulfolobus shibatae [TaxId: 2286]
Probab=100.00 E-value=5.9e-75 Score=538.28 Aligned_cols=160 Identities=34% Similarity=0.657 Sum_probs=153.1
Q ss_pred cCCCCCCcCccchHHHHhhhhhhcCCceEEEEecCcceecCCcEEEEEEeeecCccCC-CCceEEEeeccccccccCCCc
Q 008575 394 DDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVK-QGLNIFRFANRIPLLFEQGGD 472 (561)
Q Consensus 394 ~~P~~~~LsPiGe~~l~~gl~k~~~pefv~~~tr~p~~y~G~PfiVEa~iayGg~~~~-~~~~i~RfANriPLlf~~g~~ 472 (561)
++|||+|||||||++|++||+++|+|||++++||+|+||+||||||||||||||++.. ++++|||||||||||||+|||
T Consensus 1 r~P~t~cLsPiGe~~l~~Gl~k~~~peF~a~~tR~p~vy~G~PF~VEvgiayGG~~~~~~~~~vlRfANRVPLly~~g~c 80 (164)
T d2hkja2 1 RSPSADSLSVIGEDLIELGLKKIFNPDFAASITRKPKAYQGHPFIVEAGVAFGGSIPVGEEPIVLRYANKIPLIYDEKSD 80 (164)
T ss_dssp CCCCGGGCCCCCHHHHHHHHHHHHCCSEEEEEECCCEEETTEEEEEEEEEEESTTSCCBSSCEEEEEETTEEECSCGGGS
T ss_pred CcCCCCccCccCHHHHHHHHHHhcCcceEEEeccCCceecCCCEEEEEeeeecCCCCCCCCceEEEecccCceeeecCcc
Confidence 5899999999999999999999999999999999999999999999999999999854 479999999999999999999
Q ss_pred hhhhhhhcccCccccccCCCCCceEEEEEeeeCCCCCCCCcccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008575 473 VVTRTAMKRINWSSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDTKEIASAVKSAIQQCCIQLKSKIVRKIQDREQ 552 (561)
Q Consensus 473 ~it~~~~~~i~W~~Y~i~~~~~~~~v~vhi~St~vPf~~~~Ke~ia~~~~EI~~ei~~al~~~~r~L~~~l~r~~~~~~~ 552 (561)
|+|+ +|++|||++|||+|+++|++||||||||||||||+|||+|| |+|||++|||+|||+|||+|+.||+|+++++++
T Consensus 81 ~itk-av~~inW~~Ygl~q~~~p~~i~Vhv~St~VPfts~sKEaIa-d~~EI~~EirlAl~~~~R~L~~~l~kk~k~~~~ 158 (164)
T d2hkja2 81 VIWK-VVEELDWKRYGIESDQYQMVVMVHLCSTKIPYKSAGKESIA-EVEDIEKEIKNALMEVARKLKQYLSEKRKEQEA 158 (164)
T ss_dssp HHHH-HHHHSCGGGGTCCSSCBCEEEEEEEEESSCCBSSTTCCCBC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHhcChhhcCCCCCCCCEEEEEEecccCCCccccchhhhc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 99999999999999999999999999999999999999999 799999999999999999999999998876666
Q ss_pred HHH
Q 008575 553 QER 555 (561)
Q Consensus 553 ~~r 555 (561)
++|
T Consensus 159 ~~k 161 (164)
T d2hkja2 159 KKK 161 (164)
T ss_dssp HHH
T ss_pred Hhh
Confidence 555
|
| >d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} | Back information, alignment and structure |
|---|
| >d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2hkja1 a.156.1.3 (A:229-306) Topoisomerase VI-B subunit middle domain {Archaeon Sulfolobus shibatae [TaxId: 2286]} | Back information, alignment and structure |
|---|
| >d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
| >d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1k82a1 a.156.1.2 (A:129-216) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
| >d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1r2za1 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1k3xa1 a.156.1.2 (A:125-213) Endonuclease VIII {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d2gy9m1 a.156.1.1 (M:1-114) Ribosomal protein S13 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2i0za2 e.74.1.1 (A:193-361) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
| >d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2gqfa2 e.74.1.1 (A:195-342) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|