Citrus Sinensis ID: 008638

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------56
MASRRLLSSLLRSSVRRSPSKSSLSNSSVFSPAATRRASPYGHLLSRVSEYATSAAATAPPAQTPKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIAKESAA
cHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccEEEEEccEEEEEccccccccccEEEEEccccEEEEEEHHHccccEEEEEEcccccccccccEEEEccccEEEcccccccccEEEccccccccccccccccccccccccccccccccccEEEEEccEEEEEccccccccccEEEccccccHHHHHHHHHHHHHHHcccEEEEEccccccccccHHHHHHHHHccccccccccccEEEEEEEEccccccccEEEccccHHHHHHcccccccEEEEEEEcEEccccccHHHHHHHccccccccccccccHHHHHHHHcccccccccEEEEEEEEEccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccEEEEEEccccccEEEHHHHHHHccccccccccccHHHHHHccccHHHHHHHHHHHHHHHcc
ccHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccEEEcccccccccEEEEEEEccEEEEEEccccccccEEEEEcccccccEEEEEEEEEccEEEEEEcccccccEcccEEEEEEEEcEEEEcHHHcccEEcccccEccccccccccEEEEcccccccHHHccccccEEccccHHHHHHccEEcccEEEEEEcccccHHHHHHHHHHHcccccccEEEEEEEcccHHHHHHHHHHHHHccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHHcccccccccHHHccccHHHHHHHHHccccccccccEEEEEEEEcHHHccccHHHHHHHHHccEEEEEcHHHHcccccccEcccccEEccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHcccccHHHHHHHHHHHccHHcc
MASRRLLSSLLRSsvrrspsksslsnssvfspaatrraspyghlLSRVSEYatsaaatappaqtpksdvkkggggkitdeftgkgaiGQVCQVIGAVVdvrfdeglppilTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGqrvlntgspitvpvgrVTLGRIMNvigepidekgdlktehylpihreapafvEQATEQQILVTGIKVVdllapyqrggkiglfggagvgKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIklgdkqadsKCALVYgqmneppgararvgltgltvaehfrdaegqdVLLFIDNIFRFTQANSEVSALLgripsavgyqptlatdlgglqeritttkkgsitsvqaiyvpaddltdpapattfahLDATTVLSRQISelgiypavdpldstsrmlsphilgeehynTARGVQKVLQNYKNLQDIIAILGmdelseddKLTVARARKIQRFlsqpfhvaevftgapgkyVELKESIASFQgvldgkyddlpeqsfyMVGGIEEVIAKAEKIAKESAA
masrrllssllrssvrrspsksslsnssvfspaatrraspYGHLLSRVSEYATsaaatappaqtpksdvkkgggGKITdeftgkgaigQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVrgqrvlntgspitvpvgrvTLGRIMNVIgepidekgdLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQmneppgaraRVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERItttkkgsitsVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRflsqpfhvaevFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIAKESAA
MAsrrllssllrssvrrspsksslsnssVFSPAATRRASPYGHLLSRVSEYatsaaatappaqtpKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGieeviakaekiakesaa
*****************************************************************************TDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAK**********
****************************************************************************************QVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKA**I******
************************************RASPYGHLLSRVSEYA*********************GGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIAKESAA
**************************************SPYGHLLSRVSEYATSAAAT****************GKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIA*****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASRRLLSSLLRSSVRRSPSKSSLSNSSVFSPAATRRASPYGHLLSRVSEYATSAAATAPPAQTPKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIAKESAA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query558 2.2.26 [Sep-21-2011]
P17614560 ATP synthase subunit beta N/A no 0.994 0.991 0.877 0.0
Q01859552 ATP synthase subunit beta yes no 0.987 0.998 0.878 0.0
P19023553 ATP synthase subunit beta N/A no 0.991 1.0 0.885 0.0
P29685562 ATP synthase subunit beta N/A no 0.930 0.923 0.930 0.0
Q9C5A9559 ATP synthase subunit beta yes no 0.946 0.944 0.850 0.0
P83483556 ATP synthase subunit beta yes no 0.948 0.951 0.846 0.0
P83484556 ATP synthase subunit beta yes no 0.948 0.951 0.846 0.0
P37399547 ATP synthase subunit beta N/A no 0.965 0.985 0.816 0.0
P38482574 ATP synthase subunit beta N/A no 0.844 0.820 0.842 0.0
P10719529 ATP synthase subunit beta yes no 0.899 0.948 0.758 0.0
>sp|P17614|ATPBM_NICPL ATP synthase subunit beta, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPB PE=1 SV=1 Back     alignment and function desciption
 Score =  972 bits (2512), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/563 (87%), Positives = 520/563 (92%), Gaps = 8/563 (1%)

Query: 1   MASRRLLSSLLRSSVRRSPS--KSSLSNS-SVFSPAATRRASPYGHLLSRVSEYATSAAA 57
           MASRRLL+SLLR S +R       SL NS    +  A+ RASP G LL+R  +YATSAAA
Sbjct: 1   MASRRLLASLLRQSAQRGGGLISRSLGNSIPKSASRASSRASPKGFLLNRAVQYATSAAA 60

Query: 58  TAPPAQTPKSDVKKGG--GGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEV 115
              PA  P +  K G    GKITDEFTG G+IG+VCQVIGAVVDVRFDEGLPPILTALEV
Sbjct: 61  ---PASQPSTPPKSGSEPSGKITDEFTGAGSIGKVCQVIGAVVDVRFDEGLPPILTALEV 117

Query: 116 VDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVI 175
           +D+ +RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTGSPITVPVGR TLGRI+NVI
Sbjct: 118 LDNQIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIINVI 177

Query: 176 GEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGA 235
           GE IDE+G + T+H+LPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGA
Sbjct: 178 GEAIDERGPITTDHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGA 237

Query: 236 GVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCA 295
           GVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLG+KQ++SKCA
Sbjct: 238 GVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGEKQSESKCA 297

Query: 296 LVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIP 355
           LVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIP
Sbjct: 298 LVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIP 357

Query: 356 SAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLS 415
           SAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLS
Sbjct: 358 SAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLS 417

Query: 416 RQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDEL 475
           RQISELGIYPAVDPLDSTSRMLSPHILGE+HYNTARGVQKVLQNYKNLQDIIAILGMDEL
Sbjct: 418 RQISELGIYPAVDPLDSTSRMLSPHILGEDHYNTARGVQKVLQNYKNLQDIIAILGMDEL 477

Query: 476 SEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQS 535
           SEDDK+TVARARKIQRFLSQPFHVAEVFTGAPGKYV+LKESI SFQGVLDGKYDDL EQS
Sbjct: 478 SEDDKMTVARARKIQRFLSQPFHVAEVFTGAPGKYVDLKESINSFQGVLDGKYDDLSEQS 537

Query: 536 FYMVGGIEEVIAKAEKIAKESAA 558
           FYMVGGI+EVIAKAEKIAKESAA
Sbjct: 538 FYMVGGIDEVIAKAEKIAKESAA 560
Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Subunits alpha and beta form the catalytic core in F(1). Rotation of the central stalk against the surrounding alpha(3)beta(3) subunits leads to hydrolysis of ATP in three separate catalytic sites on the beta subunits.
Nicotiana plumbaginifolia (taxid: 4092)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 1EC: 4
>sp|Q01859|ATPBM_ORYSJ ATP synthase subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPB PE=1 SV=2 Back     alignment and function description
>sp|P19023|ATPBM_MAIZE ATP synthase subunit beta, mitochondrial OS=Zea mays GN=ATPB PE=2 SV=1 Back     alignment and function description
>sp|P29685|ATPBM_HEVBR ATP synthase subunit beta, mitochondrial OS=Hevea brasiliensis GN=ATPB PE=2 SV=1 Back     alignment and function description
>sp|Q9C5A9|ATPBO_ARATH ATP synthase subunit beta-3, mitochondrial OS=Arabidopsis thaliana GN=At5g08680 PE=2 SV=1 Back     alignment and function description
>sp|P83483|ATPBM_ARATH ATP synthase subunit beta-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08670 PE=1 SV=1 Back     alignment and function description
>sp|P83484|ATPBN_ARATH ATP synthase subunit beta-2, mitochondrial OS=Arabidopsis thaliana GN=At5g08690 PE=1 SV=1 Back     alignment and function description
>sp|P37399|ATPBM_DAUCA ATP synthase subunit beta, mitochondrial OS=Daucus carota GN=ATPB PE=3 SV=1 Back     alignment and function description
>sp|P38482|ATPBM_CHLRE ATP synthase subunit beta, mitochondrial OS=Chlamydomonas reinhardtii GN=ATP2 PE=1 SV=1 Back     alignment and function description
>sp|P10719|ATPB_RAT ATP synthase subunit beta, mitochondrial OS=Rattus norvegicus GN=Atp5b PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query558
242129046557 ATP synthase beta subunit 1 [Gossypium h 0.998 1.0 0.908 0.0
255582911561 ATP synthase beta subunit, putative [Ric 0.964 0.959 0.920 0.0
356575611559 PREDICTED: ATP synthase subunit beta, mi 0.998 0.996 0.889 0.0
3676296556 mitochondrial ATPase beta subunit [Nicot 0.992 0.996 0.880 0.0
3893824553 ATPase beta subunit [Nicotiana sylvestri 0.985 0.994 0.877 0.0
115439241557 Os01g0685800 [Oryza sativa Japonica Grou 0.996 0.998 0.880 0.0
225456079554 PREDICTED: ATP synthase subunit beta, mi 0.992 1.0 0.901 0.0
3893822555 ATPase beta subunit [Nicotiana sylvestri 0.991 0.996 0.876 0.0
449465916560 PREDICTED: ATP synthase subunit beta, mi 0.935 0.932 0.937 0.0
356536246559 PREDICTED: ATP synthase subunit beta, mi 0.998 0.996 0.889 0.0
>gi|242129046|gb|ACS83602.1| ATP synthase beta subunit 1 [Gossypium hirsutum] Back     alignment and taxonomy information
 Score = 1002 bits (2590), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/558 (90%), Positives = 524/558 (93%), Gaps = 1/558 (0%)

Query: 1   MASRRLLSSLLRSSVRRSPSKSSLSNSSVFSPAATRRASPYGHLLSRVSEYATSAAATAP 60
           MASRRLLSS LRS+ RRS SKS      + SP+ TRR  P  + LSR +EY+TSAAA A 
Sbjct: 1   MASRRLLSSFLRSTSRRSLSKSPSPTPRLPSPSPTRRPFPCPYFLSRDAEYSTSAAAAAS 60

Query: 61  PAQTPKSDVKKGGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSV 120
                    KKGG GKITDEFTG GAIGQVCQVIGAVVDVRFDEGLPPILTALEV+DHS+
Sbjct: 61  APSQ-PPPAKKGGKGKITDEFTGAGAIGQVCQVIGAVVDVRFDEGLPPILTALEVMDHSI 119

Query: 121 RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPID 180
           RLVLEVAQH+GE +VRTIAMDGTEGLVRGQ VLNTGSPITVPVGR TLGRI+NVIGEPID
Sbjct: 120 RLVLEVAQHLGENMVRTIAMDGTEGLVRGQPVLNTGSPITVPVGRATLGRIINVIGEPID 179

Query: 181 EKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240
           EKG+LKT+H+LPIHREAPAFV+QATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT
Sbjct: 180 EKGELKTDHFLPIHREAPAFVDQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 239

Query: 241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQ 300
           VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLG+KQADSKCALVYGQ
Sbjct: 240 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGEKQADSKCALVYGQ 299

Query: 301 MNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGY 360
           MNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGY
Sbjct: 300 MNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGY 359

Query: 361 QPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISE 420
           QPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISE
Sbjct: 360 QPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISE 419

Query: 421 LGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDK 480
           LGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDK
Sbjct: 420 LGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDK 479

Query: 481 LTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVG 540
           LTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESI SFQGVLDGKYDDLPEQSFYMVG
Sbjct: 480 LTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESITSFQGVLDGKYDDLPEQSFYMVG 539

Query: 541 GIEEVIAKAEKIAKESAA 558
           GIEEVIAKA+KIAKESAA
Sbjct: 540 GIEEVIAKADKIAKESAA 557

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255582911|ref|XP_002532227.1| ATP synthase beta subunit, putative [Ricinus communis] gi|223528084|gb|EEF30158.1| ATP synthase beta subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356575611|ref|XP_003555932.1| PREDICTED: ATP synthase subunit beta, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|3676296|gb|AAD03392.1| mitochondrial ATPase beta subunit [Nicotiana sylvestris] Back     alignment and taxonomy information
>gi|3893824|gb|AAD03394.1| ATPase beta subunit [Nicotiana sylvestris] Back     alignment and taxonomy information
>gi|115439241|ref|NP_001043900.1| Os01g0685800 [Oryza sativa Japonica Group] gi|113533431|dbj|BAF05814.1| Os01g0685800 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|225456079|ref|XP_002280824.1| PREDICTED: ATP synthase subunit beta, mitochondrial-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|3893822|gb|AAD03393.1| ATPase beta subunit [Nicotiana sylvestris] Back     alignment and taxonomy information
>gi|449465916|ref|XP_004150673.1| PREDICTED: ATP synthase subunit beta, mitochondrial-like [Cucumis sativus] gi|449519398|ref|XP_004166722.1| PREDICTED: ATP synthase subunit beta, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356536246|ref|XP_003536650.1| PREDICTED: ATP synthase subunit beta, mitochondrial-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query558
UNIPROTKB|Q01859552 ATPB "ATP synthase subunit bet 0.903 0.913 0.906 2.1e-242
TAIR|locus:505006590556 AT5G08690 [Arabidopsis thalian 0.908 0.911 0.846 1.3e-228
TAIR|locus:504956338559 AT5G08680 [Arabidopsis thalian 0.912 0.910 0.842 5.5e-228
RGD|621368529 Atp5b "ATP synthase, H+ transp 0.811 0.856 0.819 1.3e-194
UNIPROTKB|G3V6D3529 Atp5b "ATP synthase subunit be 0.811 0.856 0.819 1.3e-194
UNIPROTKB|P06576529 ATP5B "ATP synthase subunit be 0.811 0.856 0.817 2.1e-194
MGI|MGI:107801529 Atp5b "ATP synthase, H+ transp 0.811 0.856 0.817 2.1e-194
UNIPROTKB|F1PDB4527 ATP5B "ATP synthase subunit be 0.811 0.859 0.817 7.2e-194
UNIPROTKB|P00829528 ATP5B "ATP synthase subunit be 0.808 0.854 0.818 1.9e-193
UNIPROTKB|F1SLA0528 ATP5B "ATP synthase subunit be 0.811 0.857 0.815 1.9e-193
UNIPROTKB|Q01859 ATPB "ATP synthase subunit beta, mitochondrial" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
 Score = 2336 (827.4 bits), Expect = 2.1e-242, P = 2.1e-242
 Identities = 458/505 (90%), Positives = 475/505 (94%)

Query:    37 RASPYGHLLSRVSEYXXXXXXXXXXXXXXKSDVKKGGGGKITDEFTGKGAIGQVCQVIGA 96
             R SP G+L +R + Y               +  K  GGGKITDEFTG GA+GQVCQVIGA
Sbjct:    32 RPSPSGYLFNRAAAYATAAAAKEAAPPAPATG-KATGGGKITDEFTGAGAVGQVCQVIGA 90

Query:    97 VVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTG 156
             VVDVRFDEGLPPILTALEV+DH++RLVLEVAQH+GE +VRTIAMDGTEGLVRGQRVLNTG
Sbjct:    91 VVDVRFDEGLPPILTALEVLDHNIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTG 150

Query:   157 SPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKV 216
             SPITVPVGR TLGRIMNVIGEPIDEKGD+ T H+LPIHREAPAFVEQATEQQILVTGIKV
Sbjct:   151 SPITVPVGRATLGRIMNVIGEPIDEKGDITTNHFLPIHREAPAFVEQATEQQILVTGIKV 210

Query:   217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYRE 276
             VDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYRE
Sbjct:   211 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYRE 270

Query:   277 MIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDN 336
             MIESGVIKLGDKQ++SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDN
Sbjct:   271 MIESGVIKLGDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDN 330

Query:   337 IFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDL 396
             IFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDL
Sbjct:   331 IFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDL 390

Query:   397 TDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKV 456
             TDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPH+LGE+HYNTARGVQKV
Sbjct:   391 TDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHVLGEDHYNTARGVQKV 450

Query:   457 LQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKES 516
             LQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKES
Sbjct:   451 LQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKES 510

Query:   517 IASFQGVLDGKYDDLPEQSFYMVGG 541
             + SFQGVLDGKYDDLPEQSFYMVGG
Sbjct:   511 VNSFQGVLDGKYDDLPEQSFYMVGG 535
GO:0005524 "ATP binding" evidence=ISS
GO:0015986 "ATP synthesis coupled proton transport" evidence=IEP;ISS
TAIR|locus:505006590 AT5G08690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504956338 AT5G08680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|621368 Atp5b "ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V6D3 Atp5b "ATP synthase subunit beta" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P06576 ATP5B "ATP synthase subunit beta, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:107801 Atp5b "ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PDB4 ATP5B "ATP synthase subunit beta" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P00829 ATP5B "ATP synthase subunit beta, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SLA0 ATP5B "ATP synthase subunit beta" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A5E950ATPB1_BRASB3, ., 6, ., 3, ., 1, 40.74730.85120.9895yesno
P19023ATPBM_MAIZE3, ., 6, ., 3, ., 1, 40.88530.99101.0N/Ano
P10719ATPB_RAT3, ., 6, ., 3, ., 1, 40.75860.89960.9489yesno
P38482ATPBM_CHLRE3, ., 6, ., 3, ., 1, 40.84280.84400.8205N/Ano
Q2J3I4ATPB_RHOP23, ., 6, ., 3, ., 1, 40.77020.83870.9831yesno
Q4UK18ATPB_RICFE3, ., 6, ., 3, ., 1, 40.75580.83510.9831yesno
P37399ATPBM_DAUCA3, ., 6, ., 3, ., 1, 40.81670.96590.9853N/Ano
Q2G5N5ATPB_NOVAD3, ., 6, ., 3, ., 1, 40.74780.83510.9688yesno
C3M9S1ATPB_RHISN3, ., 6, ., 3, ., 1, 40.78180.82430.9108yesno
P17614ATPBM_NICPL3, ., 6, ., 3, ., 1, 40.87740.99460.9910N/Ano
P00829ATPB_BOVIN3, ., 6, ., 3, ., 1, 40.80850.83870.8863yesno
Q3SVJ1ATPB_NITWN3, ., 6, ., 3, ., 1, 40.76680.84940.9957yesno
Q4FP38ATPB_PELUB3, ., 6, ., 3, ., 1, 40.78130.84050.9936yesno
Q89X74ATPB_BRAJA3, ., 6, ., 3, ., 1, 40.75680.84050.9832yesno
Q25117ATPB_HEMPU3, ., 6, ., 3, ., 1, 40.77350.83510.8910N/Ano
Q6NDD2ATPB_RHOPA3, ., 6, ., 3, ., 1, 40.77650.83870.9831yesno
Q01859ATPBM_ORYSJ3, ., 6, ., 3, ., 1, 40.87830.98740.9981yesno
Q05825ATPB_DROME3, ., 6, ., 3, ., 1, 40.79780.83870.9267yesno
Q1QQS8ATPB_NITHX3, ., 6, ., 3, ., 1, 40.76800.83870.9831yesno
A3PIB9ATPB1_RHOS13, ., 6, ., 3, ., 1, 40.77650.84050.9873yesno
B6JD09ATPB_OLICO3, ., 6, ., 3, ., 1, 40.78130.84050.9852yesno
Q07UZ5ATPB_RHOP53, ., 6, ., 3, ., 1, 40.77020.83870.9831yesno
Q13DP2ATPB_RHOPS3, ., 6, ., 3, ., 1, 40.77230.83870.9831yesno
A8HS10ATPB_AZOC53, ., 6, ., 3, ., 1, 40.76580.84050.9811yesno
Q92LK8ATPB_RHIME3, ., 6, ., 3, ., 1, 40.78610.82430.9126yesno
A6UDM1ATPB_SINMW3, ., 6, ., 3, ., 1, 40.78400.82430.9037yesno
P83483ATPBM_ARATH3, ., 6, ., 3, ., 1, 40.84670.94800.9514yesno
P46561ATPB_CAEEL3, ., 6, ., 3, ., 1, 40.76250.85660.8884yesno
Q21CY7ATPB_RHOPB3, ., 6, ., 3, ., 1, 40.76800.83870.9831yesno
P05038ATPB_RHORU3, ., 6, ., 3, ., 1, 40.76290.82430.9704yesno
Q11DD5ATPB_MESSB3, ., 6, ., 3, ., 1, 40.76680.84940.9132yesno
P83484ATPBN_ARATH3, ., 6, ., 3, ., 1, 40.84670.94800.9514yesno
Q9C5A9ATPBO_ARATH3, ., 6, ., 3, ., 1, 40.85070.94620.9445yesno
Q3J431ATPB1_RHOS43, ., 6, ., 3, ., 1, 40.77650.84050.9873yesno
P72247ATPB_RHOCA3, ., 6, ., 3, ., 1, 40.77120.82070.9703yesno
Q5ZLC5ATPB_CHICK3, ., 6, ., 3, ., 1, 40.80850.83870.8780yesno
Q8UC76ATPB_AGRT53, ., 6, ., 3, ., 1, 40.750.86200.9938yesno
P00830ATPB_YEAST3, ., 6, ., 3, ., 1, 40.76950.81720.8923yesno
P56480ATPB_MOUSE3, ., 6, ., 3, ., 1, 40.81060.83870.8846yesno
A4YKE0ATPB_BRASO3, ., 6, ., 3, ., 1, 40.74730.85120.9895yesno
Q9PTY0ATPB_CYPCA3, ., 6, ., 3, ., 1, 40.80210.83870.9034N/Ano
Q162S9ATPB_ROSDO3, ., 6, ., 3, ., 1, 40.75420.84400.9936yesno
Q2RV18ATPB_RHORT3, ., 6, ., 3, ., 1, 40.76290.82430.9704yesno
Q5LNP1ATPB_RUEPO3, ., 6, ., 3, ., 1, 40.750.84400.9936yesno
P06576ATPB_HUMAN3, ., 6, ., 3, ., 1, 40.80540.84400.8903yesno
P22068ATPB_SCHPO3, ., 6, ., 3, ., 1, 40.76790.83870.8914yesno
A7HT52ATPB_PARL13, ., 6, ., 3, ., 1, 40.75840.84400.9853yesno
A7IH31ATPB_XANP23, ., 6, ., 3, ., 1, 40.77680.84220.9832yesno
P29685ATPBM_HEVBR3, ., 6, ., 3, ., 1, 40.93060.93010.9234N/Ano
A4WUM7ATPB_RHOS53, ., 6, ., 3, ., 1, 40.76590.84050.9873yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.3.140.993
3rd Layer3.6.30.998

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
LOC_Os01g49190.1
ATP synthase, putative, expressed; Produces ATP from ADP in the presence of a proton gradient across the membrane (By similarity) (557 aa)
(Oryza sativa Japonica)
Predicted Functional Partners:
4348305
ATP synthase gamma chain, putative, expressed; Produces ATP from ADP in the presence of a proto [...] (324 aa)
• ••••• 0.878
4343366
ATP synthase gamma chain, putative, expressed; Produces ATP from ADP in the presence of a proto [...] (358 aa)
• • • • 0.870
4336245
4-nitrophenylphosphatase, putative, expressed (365 aa)
      • 0.742
4342714
NAD dependent epimerase/dehydratase family protein, putative, expressed (392 aa)
      • 0.669
4329578
peroxiredoxin, putative, expressed; May be an antioxidant enzyme particularly in the developing [...] (261 aa)
      • 0.663
4341660
ATP synthase F1, delta subunit family protein, putative, expressed (225 aa)
•  •• • 0.589
LOC_Os03g48471.1
ATP synthase subunit alpha, putative (190 aa)
  •     0.463
4330737
ATP synthase F1, delta subunit family protein, putative, expressed (243 aa)
•     • 0.453
3950678
ATP synthase F0 subunit 1; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Comple [...] (509 aa)
• • • ••0.440
LOC_Os09g08910.1
ATP synthase, putative, expressed; Produces ATP from ADP in the presence of a proton gradient a [...] (509 aa)
• • • ••0.437

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query558
PRK09280463 PRK09280, PRK09280, F0F1 ATP synthase subunit beta 0.0
COG0055468 COG0055, AtpD, F0F1-type ATP synthase, beta subuni 0.0
TIGR01039461 TIGR01039, atpD, ATP synthase, F1 beta subunit 0.0
CHL00060494 CHL00060, atpB, ATP synthase CF1 beta subunit 0.0
PRK12597461 PRK12597, PRK12597, F0F1 ATP synthase subunit beta 0.0
cd01133274 cd01133, F1-ATPase_beta, F1 ATP synthase beta subu 0.0
TIGR03305449 TIGR03305, alt_F1F0_F1_bet, alternate F1F0 ATPase, 0.0
pfam00006213 pfam00006, ATP-synt_ab, ATP synthase alpha/beta fa 6e-79
COG1157441 COG1157, FliI, Flagellar biosynthesis/type III sec 2e-71
cd01136326 cd01136, ATPase_flagellum-secretory_path_III, Flag 6e-65
TIGR01026440 TIGR01026, fliI_yscN, ATPase FliI/YscN family 2e-61
TIGR03496411 TIGR03496, FliI_clade1, flagellar protein export A 2e-59
TIGR02546422 TIGR02546, III_secr_ATP, type III secretion appara 3e-59
TIGR03498418 TIGR03498, FliI_clade3, flagellar protein export A 3e-59
TIGR03497413 TIGR03497, FliI_clade2, flagellar protein export A 5e-59
PRK08472434 PRK08472, fliI, flagellum-specific ATP synthase; V 8e-50
PRK06936439 PRK06936, PRK06936, type III secretion system ATPa 2e-49
PRK06002450 PRK06002, fliI, flagellum-specific ATP synthase; V 5e-46
PRK06820440 PRK06820, PRK06820, type III secretion system ATPa 2e-45
PRK06315442 PRK06315, PRK06315, type III secretion system ATPa 3e-44
PRK07721438 PRK07721, fliI, flagellum-specific ATP synthase; V 7e-44
PRK08972444 PRK08972, fliI, flagellum-specific ATP synthase; V 2e-43
PRK05688451 PRK05688, fliI, flagellum-specific ATP synthase; V 6e-42
PRK08927442 PRK08927, fliI, flagellum-specific ATP synthase; V 7e-42
PRK09099441 PRK09099, PRK09099, type III secretion system ATPa 2e-41
PRK07594433 PRK07594, PRK07594, type III secretion system ATPa 2e-40
PRK06793432 PRK06793, fliI, flagellum-specific ATP synthase; V 6e-39
PRK08149428 PRK08149, PRK08149, ATP synthase SpaL; Validated 2e-37
PRK07196434 PRK07196, fliI, flagellum-specific ATP synthase; V 3e-37
COG1156463 COG1156, NtpB, Archaeal/vacuolar-type H+-ATPase su 6e-37
TIGR01041458 TIGR01041, ATP_syn_B_arch, ATP synthase archaeal, 5e-35
pfam00306110 pfam00306, ATP-synt_ab_C, ATP synthase alpha/beta 3e-33
PRK04196460 PRK04196, PRK04196, V-type ATP synthase subunit B; 4e-33
cd01135276 cd01135, V_A-ATPase_B, V/A-type ATP synthase (non- 1e-30
PRK07960455 PRK07960, fliI, flagellum-specific ATP synthase; V 8e-30
PRK13343502 PRK13343, PRK13343, F0F1 ATP synthase subunit alph 2e-29
PRK05922434 PRK05922, PRK05922, type III secretion system ATPa 2e-28
TIGR00962501 TIGR00962, atpA, proton translocating ATP synthase 9e-27
TIGR03324497 TIGR03324, alt_F1F0_F1_al, alternate F1F0 ATPase, 1e-26
TIGR01043578 TIGR01043, ATP_syn_A_arch, ATP synthase archaeal, 4e-26
COG1155588 COG1155, NtpA, Archaeal/vacuolar-type H+-ATPase su 1e-25
TIGR01042591 TIGR01042, V-ATPase_V1_A, V-type (H+)-ATPase V1, A 2e-23
TIGR01040466 TIGR01040, V-ATPase_V1_B, V-type (H+)-ATPase V1, B 2e-22
cd01132274 cd01132, F1_ATPase_alpha, F1 ATP synthase alpha, c 4e-22
COG0056504 COG0056, AtpA, F0F1-type ATP synthase, alpha subun 4e-21
cd01120165 cd01120, RecA-like_NTPases, RecA-like NTPases 1e-19
cd01134369 cd01134, V_A-ATPase_A, V/A-type ATP synthase catal 2e-19
PRK04192586 PRK04192, PRK04192, V-type ATP synthase subunit A; 9e-18
pfam0287469 pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta 4e-16
PRK146981017 PRK14698, PRK14698, V-type ATP synthase subunit A; 1e-15
PRK02118436 PRK02118, PRK02118, V-type ATP synthase subunit B; 1e-15
PRK09281502 PRK09281, PRK09281, F0F1 ATP synthase subunit alph 1e-14
pfam1142148 pfam11421, Synthase_beta, ATP synthase F1 beta sub 3e-14
PTZ00185574 PTZ00185, PTZ00185, ATPase alpha subunit; Provisio 1e-13
CHL00059485 CHL00059, atpA, ATP synthase CF1 alpha subunit 4e-11
PRK12608380 PRK12608, PRK12608, transcription termination fact 4e-05
smart00382148 smart00382, AAA, ATPases associated with a variety 1e-04
PRK14698 1017 PRK14698, PRK14698, V-type ATP synthase subunit A; 7e-04
cd01128249 cd01128, rho_factor, Transcription termination fac 0.001
>gnl|CDD|236447 PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated Back     alignment and domain information 
 Score =  981 bits (2538), Expect = 0.0
 Identities = 353/471 (74%), Positives = 401/471 (85%), Gaps = 10/471 (2%)

Query: 85  GAIGQVCQVIGAVVDVRFDEG-LPPILTALEVVD-HSVRLVLEVAQHMGEGVVRTIAMDG 142
              G++ QVIG VVDV F  G LP I  ALEV      +LVLEVAQH+G+GVVRTIAM  
Sbjct: 1   MNTGKIVQVIGPVVDVEFPRGELPKIYNALEVEKGDGKKLVLEVAQHLGDGVVRTIAMGS 60

Query: 143 TEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVE 202
           T+GLVRG  V++TG+PI+VPVG+ TLGRI NV+GEPIDEKG +  E   PIHR+AP+F E
Sbjct: 61  TDGLVRGMEVIDTGAPISVPVGKATLGRIFNVLGEPIDEKGPIGAEERWPIHRKAPSFEE 120

Query: 203 QATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG 262
            +T+ +IL TGIKV+DLLAPY +GGKIGLFGGAGVGKTVLI ELINN+AK HGG+SVFAG
Sbjct: 121 LSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAG 180

Query: 263 VGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF 322
           VGERTREGNDLY EM ESGV+         K ALV+GQMNEPPGAR RV LTGLT+AE+F
Sbjct: 181 VGERTREGNDLYHEMKESGVLD--------KTALVFGQMNEPPGARLRVALTGLTMAEYF 232

Query: 323 RDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGS 382
           RD EGQDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G LQERIT+TKKGS
Sbjct: 233 RDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGS 292

Query: 383 ITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHIL 442
           ITSVQA+YVPADDLTDPAPATTFAHLDATTVLSRQI+ELGIYPAVDPLDSTSR+L P I+
Sbjct: 293 ITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRILDPLIV 352

Query: 443 GEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEV 502
           GEEHY+ AR VQ++LQ YK LQDIIAILGMDELSE+DKLTVARARKIQRFLSQPF VAE 
Sbjct: 353 GEEHYDVAREVQQILQRYKELQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFFVAEQ 412

Query: 503 FTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIA 553
           FTG+PGKYV LK++I  F+ +L+G+YD LPEQ+FYMVG IEE I KA+K+A
Sbjct: 413 FTGSPGKYVPLKDTIRGFKEILEGEYDHLPEQAFYMVGTIEEAIEKAKKLA 463

Length = 463
>gnl|CDD|223133 COG0055, AtpD, F0F1-type ATP synthase, beta subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|211621 TIGR01039, atpD, ATP synthase, F1 beta subunit Back     alignment and domain information
>gnl|CDD|214349 CHL00060, atpB, ATP synthase CF1 beta subunit Back     alignment and domain information
>gnl|CDD|183615 PRK12597, PRK12597, F0F1 ATP synthase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|238553 cd01133, F1-ATPase_beta, F1 ATP synthase beta subunit, nucleotide-binding domain Back     alignment and domain information
>gnl|CDD|132348 TIGR03305, alt_F1F0_F1_bet, alternate F1F0 ATPase, F1 subunit beta Back     alignment and domain information
>gnl|CDD|215651 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family, nucleotide-binding domain Back     alignment and domain information
>gnl|CDD|224079 COG1157, FliI, Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|238556 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific ATPase/type III secretory pathway virulence-related protein Back     alignment and domain information
>gnl|CDD|233237 TIGR01026, fliI_yscN, ATPase FliI/YscN family Back     alignment and domain information
>gnl|CDD|213817 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI Back     alignment and domain information
>gnl|CDD|233918 TIGR02546, III_secr_ATP, type III secretion apparatus H+-transporting two-sector ATPase Back     alignment and domain information
>gnl|CDD|163293 TIGR03498, FliI_clade3, flagellar protein export ATPase FliI Back     alignment and domain information
>gnl|CDD|211826 TIGR03497, FliI_clade2, flagellar protein export ATPase FliI Back     alignment and domain information
>gnl|CDD|181439 PRK08472, fliI, flagellum-specific ATP synthase; Validated Back     alignment and domain information
>gnl|CDD|180762 PRK06936, PRK06936, type III secretion system ATPase; Provisional Back     alignment and domain information
>gnl|CDD|235666 PRK06002, fliI, flagellum-specific ATP synthase; Validated Back     alignment and domain information
>gnl|CDD|180712 PRK06820, PRK06820, type III secretion system ATPase; Validated Back     alignment and domain information
>gnl|CDD|180526 PRK06315, PRK06315, type III secretion system ATPase; Provisional Back     alignment and domain information
>gnl|CDD|181092 PRK07721, fliI, flagellum-specific ATP synthase; Validated Back     alignment and domain information
>gnl|CDD|181599 PRK08972, fliI, flagellum-specific ATP synthase; Validated Back     alignment and domain information
>gnl|CDD|168181 PRK05688, fliI, flagellum-specific ATP synthase; Validated Back     alignment and domain information
>gnl|CDD|236351 PRK08927, fliI, flagellum-specific ATP synthase; Validated Back     alignment and domain information
>gnl|CDD|169656 PRK09099, PRK09099, type III secretion system ATPase; Provisional Back     alignment and domain information
>gnl|CDD|136438 PRK07594, PRK07594, type III secretion system ATPase SsaN; Validated Back     alignment and domain information
>gnl|CDD|180696 PRK06793, fliI, flagellum-specific ATP synthase; Validated Back     alignment and domain information
>gnl|CDD|236166 PRK08149, PRK08149, ATP synthase SpaL; Validated Back     alignment and domain information
>gnl|CDD|180875 PRK07196, fliI, flagellum-specific ATP synthase; Validated Back     alignment and domain information
>gnl|CDD|224078 COG1156, NtpB, Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|200071 TIGR01041, ATP_syn_B_arch, ATP synthase archaeal, B subunit Back     alignment and domain information
>gnl|CDD|215848 pfam00306, ATP-synt_ab_C, ATP synthase alpha/beta chain, C terminal domain Back     alignment and domain information
>gnl|CDD|235251 PRK04196, PRK04196, V-type ATP synthase subunit B; Provisional Back     alignment and domain information
>gnl|CDD|238555 cd01135, V_A-ATPase_B, V/A-type ATP synthase (non-catalytic) subunit B Back     alignment and domain information
>gnl|CDD|181182 PRK07960, fliI, flagellum-specific ATP synthase; Validated Back     alignment and domain information
>gnl|CDD|183987 PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|102061 PRK05922, PRK05922, type III secretion system ATPase; Validated Back     alignment and domain information
>gnl|CDD|233211 TIGR00962, atpA, proton translocating ATP synthase, F1 alpha subunit Back     alignment and domain information
>gnl|CDD|132367 TIGR03324, alt_F1F0_F1_al, alternate F1F0 ATPase, F1 subunit alpha Back     alignment and domain information
>gnl|CDD|130115 TIGR01043, ATP_syn_A_arch, ATP synthase archaeal, A subunit Back     alignment and domain information
>gnl|CDD|224077 COG1155, NtpA, Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|233245 TIGR01042, V-ATPase_V1_A, V-type (H+)-ATPase V1, A subunit Back     alignment and domain information
>gnl|CDD|233244 TIGR01040, V-ATPase_V1_B, V-type (H+)-ATPase V1, B subunit Back     alignment and domain information
>gnl|CDD|238552 cd01132, F1_ATPase_alpha, F1 ATP synthase alpha, central domain Back     alignment and domain information
>gnl|CDD|223134 COG0056, AtpA, F0F1-type ATP synthase, alpha subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases Back     alignment and domain information
>gnl|CDD|238554 cd01134, V_A-ATPase_A, V/A-type ATP synthase catalytic subunit A Back     alignment and domain information
>gnl|CDD|235248 PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional Back     alignment and domain information
>gnl|CDD|217261 pfam02874, ATP-synt_ab_N, ATP synthase alpha/beta family, beta-barrel domain Back     alignment and domain information
>gnl|CDD|184795 PRK14698, PRK14698, V-type ATP synthase subunit A; Provisional Back     alignment and domain information
>gnl|CDD|179373 PRK02118, PRK02118, V-type ATP synthase subunit B; Provisional Back     alignment and domain information
>gnl|CDD|236448 PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|204648 pfam11421, Synthase_beta, ATP synthase F1 beta subunit Back     alignment and domain information
>gnl|CDD|140212 PTZ00185, PTZ00185, ATPase alpha subunit; Provisional Back     alignment and domain information
>gnl|CDD|176999 CHL00059, atpA, ATP synthase CF1 alpha subunit Back     alignment and domain information
>gnl|CDD|237150 PRK12608, PRK12608, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities Back     alignment and domain information
>gnl|CDD|184795 PRK14698, PRK14698, V-type ATP synthase subunit A; Provisional Back     alignment and domain information
>gnl|CDD|238548 cd01128, rho_factor, Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 558
COG0055468 AtpD F0F1-type ATP synthase, beta subunit [Energy 100.0
KOG1350521 consensus F0F1-type ATP synthase, beta subunit [En 100.0
TIGR03305449 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit 100.0
CHL00060494 atpB ATP synthase CF1 beta subunit 100.0
TIGR01039461 atpD ATP synthase, F1 beta subunit. The sequences 100.0
PRK09280463 F0F1 ATP synthase subunit beta; Validated 100.0
PRK12597461 F0F1 ATP synthase subunit beta; Provisional 100.0
TIGR03324497 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit a 100.0
PRK13343502 F0F1 ATP synthase subunit alpha; Provisional 100.0
PTZ00185574 ATPase alpha subunit; Provisional 100.0
CHL00059485 atpA ATP synthase CF1 alpha subunit 100.0
PRK09281502 F0F1 ATP synthase subunit alpha; Validated 100.0
TIGR00962501 atpA proton translocating ATP synthase, F1 alpha s 100.0
COG1157441 FliI Flagellar biosynthesis/type III secretory pat 100.0
TIGR01041458 ATP_syn_B_arch ATP synthase archaeal, B subunit. A 100.0
PRK04196460 V-type ATP synthase subunit B; Provisional 100.0
PRK02118436 V-type ATP synthase subunit B; Provisional 100.0
PRK04192586 V-type ATP synthase subunit A; Provisional 100.0
TIGR01043578 ATP_syn_A_arch ATP synthase archaeal, A subunit. A 100.0
PRK06936439 type III secretion system ATPase; Provisional 100.0
PRK07165507 F0F1 ATP synthase subunit alpha; Validated 100.0
TIGR01042591 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. Th 100.0
PRK08927442 fliI flagellum-specific ATP synthase; Validated 100.0
PRK08972444 fliI flagellum-specific ATP synthase; Validated 100.0
TIGR01040466 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. Th 100.0
TIGR03497413 FliI_clade2 flagellar protein export ATPase FliI. 100.0
PRK05688451 fliI flagellum-specific ATP synthase; Validated 100.0
TIGR03496411 FliI_clade1 flagellar protein export ATPase FliI. 100.0
TIGR03498418 FliI_clade3 flagellar protein export ATPase FliI. 100.0
PRK09099441 type III secretion system ATPase; Provisional 100.0
PRK06820440 type III secretion system ATPase; Validated 100.0
PRK07594433 type III secretion system ATPase SsaN; Validated 100.0
PRK08472434 fliI flagellum-specific ATP synthase; Validated 100.0
PRK07960455 fliI flagellum-specific ATP synthase; Validated 100.0
PRK05922434 type III secretion system ATPase; Validated 100.0
PRK08149428 ATP synthase SpaL; Validated 100.0
COG0056504 AtpA F0F1-type ATP synthase, alpha subunit [Energy 100.0
TIGR01026440 fliI_yscN ATPase FliI/YscN family. This family of 100.0
TIGR02546422 III_secr_ATP type III secretion apparatus H+-trans 100.0
PRK06002450 fliI flagellum-specific ATP synthase; Validated 100.0
PRK07196434 fliI flagellum-specific ATP synthase; Validated 100.0
PRK07721438 fliI flagellum-specific ATP synthase; Validated 100.0
PRK06793432 fliI flagellum-specific ATP synthase; Validated 100.0
PRK06315442 type III secretion system ATPase; Provisional 100.0
cd01135276 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) 100.0
cd01133274 F1-ATPase_beta F1 ATP synthase beta subunit, nucle 100.0
cd01136326 ATPase_flagellum-secretory_path_III Flagellum-spec 100.0
cd01132274 F1_ATPase_alpha F1 ATP synthase alpha, central dom 100.0
PRK146981017 V-type ATP synthase subunit A; Provisional 100.0
cd01134369 V_A-ATPase_A V/A-type ATP synthase catalytic subun 100.0
COG1155588 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [E 100.0
KOG1352618 consensus Vacuolar H+-ATPase V1 sector, subunit A 100.0
PRK12608380 transcription termination factor Rho; Provisional 100.0
PF00006215 ATP-synt_ab: ATP synthase alpha/beta family, nucle 100.0
COG1156463 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [E 100.0
PRK12678672 transcription termination factor Rho; Provisional 100.0
PRK09376416 rho transcription termination factor Rho; Provisio 100.0
KOG1351489 consensus Vacuolar H+-ATPase V1 sector, subunit B 100.0
TIGR00767415 rho transcription termination factor Rho. Members 100.0
cd01128249 rho_factor Transcription termination factor rho is 100.0
COG1158422 Rho Transcription termination factor [Transcriptio 100.0
KOG1353340 consensus F0F1-type ATP synthase, alpha subunit [E 100.0
PF00306113 ATP-synt_ab_C: ATP synthase alpha/beta chain, C te 99.41
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 99.04
PF0287469 ATP-synt_ab_N: ATP synthase alpha/beta family, bet 98.5
PF1142149 Synthase_beta: ATP synthase F1 beta subunit; Inter 98.48
PF06745226 KaiC: KaiC; InterPro: IPR014774 This entry represe 98.19
COG0467260 RAD55 RecA-superfamily ATPases implicated in signa 98.15
smart00382148 AAA ATPases associated with a variety of cellular 98.09
cd01394218 radB RadB. The archaeal protein radB shares simila 97.87
PRK06067234 flagellar accessory protein FlaH; Validated 97.82
PRK09302509 circadian clock protein KaiC; Reviewed 97.81
cd01123235 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r 97.64
TIGR03878259 thermo_KaiC_2 KaiC domain protein, AF_0795 family. 97.52
TIGR02012321 tigrfam_recA protein RecA. This model describes or 97.44
cd01393226 recA_like RecA is a bacterial enzyme which has rol 97.43
PRK09354349 recA recombinase A; Provisional 97.39
TIGR02236310 recomb_radA DNA repair and recombination protein R 97.39
cd00983325 recA RecA is a bacterial enzyme which has roles in 97.31
PRK09361225 radB DNA repair and recombination protein RadB; Pr 97.31
TIGR02655484 circ_KaiC circadian clock protein KaiC. Members of 97.29
TIGR03877237 thermo_KaiC_1 KaiC domain protein, Ph0284 family. 97.26
PLN03187344 meiotic recombination protein DMC1 homolog; Provis 97.24
cd01122271 GP4d_helicase GP4d_helicase is a homohexameric 5'- 97.23
PRK04328249 hypothetical protein; Provisional 97.2
TIGR02655 484 circ_KaiC circadian clock protein KaiC. Members of 97.15
cd01124187 KaiC KaiC is a circadian clock protein primarily f 97.11
COG1155588 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [E 97.07
TIGR02238313 recomb_DMC1 meiotic recombinase Dmc1. This model d 97.03
TIGR03881229 KaiC_arch_4 KaiC domain protein, PAE1156 family. M 97.02
PTZ00035337 Rad51 protein; Provisional 97.02
PRK09302 509 circadian clock protein KaiC; Reviewed 96.88
TIGR02237209 recomb_radB DNA repair and recombination protein R 96.83
TIGR03880224 KaiC_arch_3 KaiC domain protein, AF_0351 family. T 96.82
PRK09519 790 recA DNA recombination protein RecA; Reviewed 96.81
PRK04301317 radA DNA repair and recombination protein RadA; Va 96.78
TIGR00416454 sms DNA repair protein RadA. The gene protuct code 96.77
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 96.77
PLN03186342 DNA repair protein RAD51 homolog; Provisional 96.74
PF05729166 NACHT: NACHT domain 96.68
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 96.6
PRK11823446 DNA repair protein RadA; Provisional 96.56
TIGR02239316 recomb_RAD51 DNA repair protein RAD51. This eukary 96.41
PRK08533230 flagellar accessory protein FlaH; Reviewed 96.35
PRK05973237 replicative DNA helicase; Provisional 96.32
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 96.27
PF00154322 RecA: recA bacterial DNA recombination protein; In 96.12
PF13173128 AAA_14: AAA domain 96.05
PF00931287 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is 95.9
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 95.71
COG2256 436 MGS1 ATPase related to the helicase subunit of the 95.62
TIGR02928365 orc1/cdc6 family replication initiation protein. M 95.38
PF08423256 Rad51: Rad51; InterPro: IPR013632 This domain is f 95.37
PRK00411394 cdc6 cell division control protein 6; Reviewed 95.28
PF04665241 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 95.27
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 95.22
KOG2028 554 consensus ATPase related to the helicase subunit o 95.15
TIGR00665434 DnaB replicative DNA helicase. This model describe 95.09
cd00984242 DnaB_C DnaB helicase C terminal domain. The hexame 95.08
PF03796259 DnaB_C: DnaB-like helicase C terminal domain; Inte 94.95
COG1124252 DppF ABC-type dipeptide/oligopeptide/nickel transp 94.89
PRK13342413 recombination factor protein RarA; Reviewed 94.89
COG0468279 RecA RecA/RadA recombinase [DNA replication, recom 94.77
cd01125239 repA Hexameric Replicative Helicase RepA. RepA is 94.5
PRK10416318 signal recognition particle-docking protein FtsY; 94.44
PF13207121 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 94.41
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 94.41
PF13521163 AAA_28: AAA domain; PDB: 1LW7_A. 94.39
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 94.39
cd03115173 SRP The signal recognition particle (SRP) mediates 94.38
PRK05748448 replicative DNA helicase; Provisional 94.27
COG1066456 Sms Predicted ATP-dependent serine protease [Postt 94.25
PF01583156 APS_kinase: Adenylylsulphate kinase; InterPro: IPR 94.13
cd03222177 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi 94.09
cd00820107 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC 94.07
PRK09165497 replicative DNA helicase; Provisional 93.86
COG1126240 GlnQ ABC-type polar amino acid transport system, A 93.86
COG0563178 Adk Adenylate kinase and related kinases [Nucleoti 93.85
cd00544169 CobU Adenosylcobinamide kinase / adenosylcobinamid 93.82
cd03229178 ABC_Class3 This class is comprised of all BPD (Bin 93.8
TIGR03600421 phage_DnaB phage replicative helicase, DnaB family 93.78
TIGR01166190 cbiO cobalt transport protein ATP-binding subunit. 93.76
PF13481193 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. 93.7
cd03255218 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of 93.7
cd03254229 ABCC_Glucan_exporter_like Glucan exporter ATP-bind 93.65
cd03260227 ABC_PstB_phosphate_transporter Phosphate uptake is 93.63
cd03292214 ABC_FtsE_transporter FtsE is a hydrophilic nucleot 93.62
PF00005137 ABC_tran: ABC transporter This structure is on hol 93.6
cd03225211 ABC_cobalt_CbiO_domain1 Domain I of the ABC compon 93.59
COG1116248 TauB ABC-type nitrate/sulfonate/bicarbonate transp 93.58
cd03269210 ABC_putative_ATPase This subfamily is involved in 93.5
PRK14974336 cell division protein FtsY; Provisional 93.49
cd03224222 ABC_TM1139_LivF_branched LivF (TM1139) is part of 93.48
TIGR02211221 LolD_lipo_ex lipoprotein releasing system, ATP-bin 93.46
COG1125309 OpuBA ABC-type proline/glycine betaine transport s 93.46
TIGR02315243 ABC_phnC phosphonate ABC transporter, ATP-binding 93.45
TIGR03608206 L_ocin_972_ABC putative bacteriocin export ABC tra 93.42
PRK13540200 cytochrome c biogenesis protein CcmA; Provisional 93.41
TIGR00960216 3a0501s02 Type II (General) Secretory Pathway (IIS 93.38
cd03238176 ABC_UvrA The excision repair protein UvrA; Nucleot 93.38
cd03256241 ABC_PhnC_transporter ABC-type phosphate/phosphonat 93.32
TIGR03410230 urea_trans_UrtE urea ABC transporter, ATP-binding 93.29
cd03296239 ABC_CysA_sulfate_importer Part of the ABC transpor 93.29
cd03265220 ABC_DrrA DrrA is the ATP-binding protein component 93.29
cd03258233 ABC_MetN_methionine_transporter MetN (also known a 93.29
PRK08181269 transposase; Validated 93.28
cd03298211 ABC_ThiQ_thiamine_transporter ABC-type thiamine tr 93.25
cd03250204 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. 93.22
cd03257228 ABC_NikE_OppD_transporters The ABC transporter sub 93.21
cd03249238 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) 93.2
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 93.19
cd03261235 ABC_Org_Solvent_Resistant ABC (ATP-binding cassett 93.18
PRK13539207 cytochrome c biogenesis protein CcmA; Provisional 93.16
cd03226205 ABC_cobalt_CbiO_domain2 Domain II of the ABC compo 93.15
COG3842352 PotA ABC-type spermidine/putrescine transport syst 93.14
PRK11124242 artP arginine transporter ATP-binding subunit; Pro 93.13
cd03262213 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- 93.12
cd03259213 ABC_Carb_Solutes_like ABC Carbohydrate and Solute 93.11
cd03218232 ABC_YhbG The ABC transporters belonging to the Yhb 93.1
TIGR03864236 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, 93.08
PRK14247250 phosphate ABC transporter ATP-binding protein; Pro 93.07
TIGR00455184 apsK adenylylsulfate kinase (apsK). Important resi 93.06
cd03214180 ABC_Iron-Siderophores_B12_Hemin ABC transporters, 93.05
cd03266218 ABC_NatA_sodium_exporter NatA is the ATPase compon 93.05
PF08477119 Miro: Miro-like protein; InterPro: IPR013684 Mitoc 93.05
PRK08118167 topology modulation protein; Reviewed 93.04
cd03231201 ABC_CcmA_heme_exporter CcmA, the ATP-binding compo 93.0
cd03301213 ABC_MalK_N The N-terminal ATPase domain of the mal 92.99
PRK14267253 phosphate ABC transporter ATP-binding protein; Pro 92.99
TIGR02673214 FtsE cell division ATP-binding protein FtsE. This 92.98
cd03252237 ABCC_Hemolysin The ABC-transporter hemolysin B is 92.97
cd03245220 ABCC_bacteriocin_exporters ABC-type bacteriocin ex 92.95
cd03247178 ABCC_cytochrome_bd The CYD subfamily implicated in 92.94
TIGR00064272 ftsY signal recognition particle-docking protein F 92.93
cd03219236 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans 92.93
PHA02542473 41 41 helicase; Provisional 92.92
cd03235213 ABC_Metallic_Cations ABC component of the metal-ty 92.9
cd03251234 ABCC_MsbA MsbA is an essential ABC transporter, cl 92.89
TIGR01978243 sufC FeS assembly ATPase SufC. SufC is part of the 92.88
PRK11701258 phnK phosphonate C-P lyase system protein PhnK; Pr 92.87
cd03293220 ABC_NrtD_SsuB_transporters NrtD and SsuB are the A 92.87
PRK11248255 tauB taurine transporter ATP-binding subunit; Prov 92.86
PRK07261171 topology modulation protein; Provisional 92.86
PRK13541195 cytochrome c biogenesis protein CcmA; Provisional 92.84
PRK10895241 lipopolysaccharide ABC transporter ATP-binding pro 92.84
PF12775272 AAA_7: P-loop containing dynein motor region D3; P 92.78
PF13238129 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB 92.78
PRK14250241 phosphate ABC transporter ATP-binding protein; Pro 92.75
PRK11264250 putative amino-acid ABC transporter ATP-binding pr 92.74
PRK14240250 phosphate transporter ATP-binding protein; Provisi 92.73
PRK14274259 phosphate ABC transporter ATP-binding protein; Pro 92.73
PRK09493240 glnQ glutamine ABC transporter ATP-binding protein 92.7
cd03295242 ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin 92.69
cd03216163 ABC_Carb_Monos_I This family represents the domain 92.67
PRK14723 767 flhF flagellar biosynthesis regulator FlhF; Provis 92.65
cd03228171 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein 92.65
PRK08760476 replicative DNA helicase; Provisional 92.65
PRK10575265 iron-hydroxamate transporter ATP-binding subunit; 92.64
PRK13543214 cytochrome c biogenesis protein CcmA; Provisional 92.64
TIGR01188302 drrA daunorubicin resistance ABC transporter ATP-b 92.62
PRK14255252 phosphate ABC transporter ATP-binding protein; Pro 92.59
cd03300232 ABC_PotA_N PotA is an ABC-type transporter and the 92.59
PRK10584228 putative ABC transporter ATP-binding protein YbbA; 92.58
cd03270226 ABC_UvrA_I The excision repair protein UvrA domain 92.58
cd03215182 ABC_Carb_Monos_II This family represents domain II 92.57
cd03223166 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass 92.55
cd03253236 ABCC_ATM1_transporter ATM1 is an ABC transporter t 92.54
PRK11629233 lolD lipoprotein transporter ATP-binding subunit; 92.54
PRK14242253 phosphate transporter ATP-binding protein; Provisi 92.54
TIGR03411242 urea_trans_UrtD urea ABC transporter, ATP-binding 92.54
cd03263220 ABC_subfamily_A The ABCA subfamily mediates the tr 92.52
PRK11247257 ssuB aliphatic sulfonates transport ATP-binding su 92.52
PRK05800170 cobU adenosylcobinamide kinase/adenosylcobinamide- 92.51
TIGR02770230 nickel_nikD nickel import ATP-binding protein NikD 92.49
cd03268208 ABC_BcrA_bacitracin_resist The BcrA subfamily repr 92.49
PRK10247225 putative ABC transporter ATP-binding protein YbbL; 92.49
COG4619223 ABC-type uncharacterized transport system, ATPase 92.48
KOG0057591 consensus Mitochondrial Fe/S cluster exporter, ABC 92.47
PRK15093330 antimicrobial peptide ABC transporter ATP-binding 92.46
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 92.45
COG4608268 AppF ABC-type oligopeptide transport system, ATPas 92.45
PRK14241258 phosphate transporter ATP-binding protein; Provisi 92.43
PF1324576 AAA_19: Part of AAA domain 92.43
PRK05595444 replicative DNA helicase; Provisional 92.42
PRK15177213 Vi polysaccharide export ATP-binding protein VexC; 92.42
TIGR03005252 ectoine_ehuA ectoine/hydroxyectoine ABC transporte 92.42
PRK13646286 cbiO cobalt transporter ATP-binding subunit; Provi 92.42
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 92.39
PRK11144352 modC molybdate transporter ATP-binding protein; Pr 92.39
cd03246173 ABCC_Protease_Secretion This family represents the 92.37
TIGR01184230 ntrCD nitrate transport ATP-binding subunits C and 92.36
cd03230173 ABC_DR_subfamily_A This family of ATP-binding prot 92.35
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 92.33
PRK13538204 cytochrome c biogenesis protein CcmA; Provisional 92.32
TIGR02323253 CP_lyasePhnK phosphonate C-P lyase system protein 92.31
PRK14239252 phosphate transporter ATP-binding protein; Provisi 92.31
PRK15056272 manganese/iron transporter ATP-binding protein; Pr 92.3
PRK10771232 thiQ thiamine transporter ATP-binding subunit; Pro 92.29
TIGR02324224 CP_lyasePhnL phosphonate C-P lyase system protein 92.27
PRK11831269 putative ABC transporter ATP-binding protein YrbF; 92.25
PRK13641287 cbiO cobalt transporter ATP-binding subunit; Provi 92.25
PRK07004460 replicative DNA helicase; Provisional 92.24
PRK14273254 phosphate ABC transporter ATP-binding protein; Pro 92.24
PRK14248268 phosphate ABC transporter ATP-binding protein; Pro 92.24
PRK10908222 cell division protein FtsE; Provisional 92.24
COG1120258 FepC ABC-type cobalamin/Fe3+-siderophores transpor 92.24
PF00004132 AAA: ATPase family associated with various cellula 92.22
TIGR01288303 nodI ATP-binding ABC transporter family nodulation 92.21
TIGR02314343 ABC_MetN D-methionine ABC transporter, ATP-binding 92.21
cd03369207 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty 92.2
TIGR01189198 ccmA heme ABC exporter, ATP-binding protein CcmA. 92.19
PRK08506472 replicative DNA helicase; Provisional 92.19
TIGR00972247 3a0107s01c2 phosphate ABC transporter, ATP-binding 92.18
PRK13548258 hmuV hemin importer ATP-binding subunit; Provision 92.17
COG3638258 ABC-type phosphate/phosphonate transport system, A 92.16
PF13671143 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 92.16
PRK13645289 cbiO cobalt transporter ATP-binding subunit; Provi 92.15
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 92.13
PRK11308327 dppF dipeptide transporter ATP-binding subunit; Pr 92.12
cd03290218 ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec 92.12
PRK14262250 phosphate ABC transporter ATP-binding protein; Pro 92.1
PF13191185 AAA_16: AAA ATPase domain; PDB: 2V1U_A. 92.09
PRK14237267 phosphate transporter ATP-binding protein; Provisi 92.08
PRK14243264 phosphate transporter ATP-binding protein; Provisi 92.06
cd03217200 ABC_FeS_Assembly ABC-type transport system involve 92.05
COG1136226 SalX ABC-type antimicrobial peptide transport syst 92.02
TIGR03740223 galliderm_ABC gallidermin-class lantibiotic protec 92.02
cd03248226 ABCC_TAP TAP, the Transporter Associated with Anti 92.02
PRK09544251 znuC high-affinity zinc transporter ATPase; Review 92.01
PRK14266250 phosphate ABC transporter ATP-binding protein; Pro 92.01
PRK14256252 phosphate ABC transporter ATP-binding protein; Pro 91.99
PRK13649280 cbiO cobalt transporter ATP-binding subunit; Provi 91.99
PRK13632271 cbiO cobalt transporter ATP-binding subunit; Provi 91.99
COG0444316 DppD ABC-type dipeptide/oligopeptide/nickel transp 91.97
PRK10418254 nikD nickel transporter ATP-binding protein NikD; 91.97
PF05673249 DUF815: Protein of unknown function (DUF815); Inte 91.95
COG2874235 FlaH Predicted ATPases involved in biogenesis of a 91.95
PRK13648269 cbiO cobalt transporter ATP-binding subunit; Provi 91.94
cd03233202 ABC_PDR_domain1 The pleiotropic drug resistance (P 91.93
cd03267236 ABC_NatA_like Similar in sequence to NatA, this is 91.92
TIGR03771223 anch_rpt_ABC anchored repeat-type ABC transporter, 91.92
PRK13638271 cbiO cobalt transporter ATP-binding subunit; Provi 91.91
PRK10253265 iron-enterobactin transporter ATP-binding protein; 91.89
PRK10744260 pstB phosphate transporter ATP-binding protein; Pr 91.87
TIGR02769265 nickel_nikE nickel import ATP-binding protein NikE 91.85
PRK14238271 phosphate transporter ATP-binding protein; Provisi 91.84
PRK14087450 dnaA chromosomal replication initiation protein; P 91.84
PRK07773 886 replicative DNA helicase; Validated 91.83
PRK14245250 phosphate ABC transporter ATP-binding protein; Pro 91.82
cd03237246 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o 91.81
PRK13650279 cbiO cobalt transporter ATP-binding subunit; Provi 91.8
PRK10851353 sulfate/thiosulfate transporter subunit; Provision 91.8
cd03236255 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o 91.79
cd03213194 ABCG_EPDR ABCG transporters are involved in eye pi 91.78
cd03282204 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS 91.78
cd03264211 ABC_drug_resistance_like ABC-type multidrug transp 91.77
PRK11300255 livG leucine/isoleucine/valine transporter ATP-bin 91.76
PRK14271276 phosphate ABC transporter ATP-binding protein; Pro 91.75
TIGR01277213 thiQ thiamine ABC transporter, ATP-binding protein 91.72
PRK14268258 phosphate ABC transporter ATP-binding protein; Pro 91.71
COG3854308 SpoIIIAA ncharacterized protein conserved in bacte 91.69
PRK14244251 phosphate ABC transporter ATP-binding protein; Pro 91.65
PRK14272252 phosphate ABC transporter ATP-binding protein; Pro 91.64
PRK13643288 cbiO cobalt transporter ATP-binding subunit; Provi 91.63
cd00267157 ABC_ATPase ABC (ATP-binding cassette) transporter 91.63
cd03289275 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic 91.61
PRK06904472 replicative DNA helicase; Validated 91.61
PRK11614237 livF leucine/isoleucine/valine transporter ATP-bin 91.6
TIGR00968237 3a0106s01 sulfate ABC transporter, ATP-binding pro 91.6
TIGR02868529 CydC thiol reductant ABC exporter, CydC subunit. T 91.6
cd03294269 ABC_Pro_Gly_Bertaine This family comprises the gly 91.6
COG1127263 Ttg2A ABC-type transport system involved in resist 91.59
PRK14261253 phosphate ABC transporter ATP-binding protein; Pro 91.57
PRK11432351 fbpC ferric transporter ATP-binding subunit; Provi 91.57
cd03234226 ABCG_White The White subfamily represents ABC tran 91.57
PRK14259269 phosphate ABC transporter ATP-binding protein; Pro 91.56
TIGR02982220 heterocyst_DevA ABC exporter ATP-binding subunit, 91.55
PRK10419268 nikE nickel transporter ATP-binding protein NikE; 91.55
PRK09473330 oppD oligopeptide transporter ATP-binding componen 91.54
PRK14251251 phosphate ABC transporter ATP-binding protein; Pro 91.54
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 91.54
PRK15079331 oligopeptide ABC transporter ATP-binding protein O 91.53
PRK11022326 dppD dipeptide transporter ATP-binding subunit; Pr 91.53
PRK10867433 signal recognition particle protein; Provisional 91.52
PRK11650356 ugpC glycerol-3-phosphate transporter ATP-binding 91.52
PRK09183259 transposase/IS protein; Provisional 91.52
COG1134249 TagH ABC-type polysaccharide/polyol phosphate tran 91.5
PRK08840464 replicative DNA helicase; Provisional 91.5
PRK11231255 fecE iron-dicitrate transporter ATP-binding subuni 91.48
PRK14270251 phosphate ABC transporter ATP-binding protein; Pro 91.48
COG4172534 ABC-type uncharacterized transport system, duplica 91.47
PRK14269246 phosphate ABC transporter ATP-binding protein; Pro 91.46
PRK14265274 phosphate ABC transporter ATP-binding protein; Pro 91.46
PRK13546264 teichoic acids export protein ATP-binding subunit; 91.46
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 91.45
TIGR01618220 phage_P_loop phage nucleotide-binding protein. Thi 91.43
PRK14957 546 DNA polymerase III subunits gamma and tau; Provisi 91.43
PRK13651305 cobalt transporter ATP-binding subunit; Provisiona 91.42
PRK14253249 phosphate ABC transporter ATP-binding protein; Pro 91.42
PRK14260259 phosphate ABC transporter ATP-binding protein; Pro 91.42
cd03232192 ABC_PDR_domain2 The pleiotropic drug resistance-li 91.41
cd03220224 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo 91.39
PRK09984262 phosphonate/organophosphate ester transporter subu 91.38
cd03297214 ABC_ModC_molybdenum_transporter ModC is an ABC-typ 91.37
PRK14235267 phosphate transporter ATP-binding protein; Provisi 91.36
PRK13635279 cbiO cobalt transporter ATP-binding subunit; Provi 91.36
PRK14275286 phosphate ABC transporter ATP-binding protein; Pro 91.35
CHL00131252 ycf16 sulfate ABC transporter protein; Validated 91.32
PRK14249251 phosphate ABC transporter ATP-binding protein; Pro 91.32
cd03288257 ABCC_SUR2 The SUR domain 2. The sulfonylurea recep 91.31
PRK10619257 histidine/lysine/arginine/ornithine transporter su 91.29
TIGR03265353 PhnT2 putative 2-aminoethylphosphonate ABC transpo 91.29
PRK13547272 hmuV hemin importer ATP-binding subunit; Provision 91.27
PF03205140 MobB: Molybdopterin guanine dinucleotide synthesis 91.26
cd02027149 APSK Adenosine 5'-phosphosulfate kinase (APSK) cat 91.22
TIGR03522301 GldA_ABC_ATP gliding motility-associated ABC trans 91.22
PRK15112267 antimicrobial peptide ABC system ATP-binding prote 91.2
PTZ00301210 uridine kinase; Provisional 91.19
PRK13647274 cbiO cobalt transporter ATP-binding subunit; Provi 91.19
PRK13637287 cbiO cobalt transporter ATP-binding subunit; Provi 91.19
COG4988559 CydD ABC-type transport system involved in cytochr 91.19
PRK14254285 phosphate ABC transporter ATP-binding protein; Pro 91.18
cd03291282 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic 91.17
PRK14264305 phosphate ABC transporter ATP-binding protein; Pro 91.15
cd03221144 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is 91.1
PRK13639275 cbiO cobalt transporter ATP-binding subunit; Provi 91.07
PRK13631320 cbiO cobalt transporter ATP-binding subunit; Provi 91.07
cd03244221 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. 91.06
COG4586325 ABC-type uncharacterized transport system, ATPase 91.06
PRK14252265 phosphate ABC transporter ATP-binding protein; Pro 91.05
PRK13640282 cbiO cobalt transporter ATP-binding subunit; Provi 91.05
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 91.04
TIGR01526325 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr 91.03
PRK07940394 DNA polymerase III subunit delta'; Validated 91.03
cd02025220 PanK Pantothenate kinase (PanK) catalyzes the phos 91.01
TIGR02142354 modC_ABC molybdenum ABC transporter, ATP-binding p 91.01
PRK13644274 cbiO cobalt transporter ATP-binding subunit; Provi 91.0
PRK06995484 flhF flagellar biosynthesis regulator FlhF; Valida 90.95
TIGR00750300 lao LAO/AO transport system ATPase. Mutations have 90.94
PRK05636505 replicative DNA helicase; Provisional 90.92
cd03299235 ABC_ModC_like Archeal protein closely related to M 90.91
PRK11176582 lipid transporter ATP-binding/permease protein; Pr 90.89
COG1135339 AbcC ABC-type metal ion transport system, ATPase c 90.82
TIGR03873256 F420-0_ABC_ATP proposed F420-0 ABC transporter, AT 90.81
PRK13536340 nodulation factor exporter subunit NodI; Provision 90.78
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 90.77
PRK13633280 cobalt transporter ATP-binding subunit; Provisiona 90.76
PRK03846198 adenylylsulfate kinase; Provisional 90.76
PRK14236272 phosphate transporter ATP-binding protein; Provisi 90.76
TIGR02639 731 ClpA ATP-dependent Clp protease ATP-binding subuni 90.73
PRK13537306 nodulation ABC transporter NodI; Provisional 90.72
PRK00300205 gmk guanylate kinase; Provisional 90.7
COG0552340 FtsY Signal recognition particle GTPase [Intracell 90.69
PRK09580248 sufC cysteine desulfurase ATPase component; Review 90.67
PRK11000369 maltose/maltodextrin transporter ATP-binding prote 90.63
PRK06526254 transposase; Provisional 90.6
PRK05541176 adenylylsulfate kinase; Provisional 90.59
PRK08727233 hypothetical protein; Validated 90.59
PRK14263261 phosphate ABC transporter ATP-binding protein; Pro 90.59
TIGR03263180 guanyl_kin guanylate kinase. Members of this famil 90.56
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 90.55
PRK13634290 cbiO cobalt transporter ATP-binding subunit; Provi 90.55
TIGR00235207 udk uridine kinase. Model contains a number of lon 90.47
PLN00020413 ribulose bisphosphate carboxylase/oxygenase activa 90.47
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 90.47
PRK09452375 potA putrescine/spermidine ABC transporter ATPase 90.46
PRK11153343 metN DL-methionine transporter ATP-binding subunit 90.44
PF03266168 NTPase_1: NTPase; InterPro: IPR004948 This entry r 90.41
PRK13652277 cbiO cobalt transporter ATP-binding subunit; Provi 90.41
PRK06321472 replicative DNA helicase; Provisional 90.4
PRK14246257 phosphate ABC transporter ATP-binding protein; Pro 90.4
TIGR02322179 phosphon_PhnN phosphonate metabolism protein/1,5-b 90.39
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 90.35
TIGR01186363 proV glycine betaine/L-proline transport ATP bindi 90.33
COG4555245 NatA ABC-type Na+ transport system, ATPase compone 90.32
TIGR03345 852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 90.32
COG4181228 Predicted ABC-type transport system involved in ly 90.31
COG1123539 ATPase components of various ABC-type transport sy 90.29
PRK14258261 phosphate ABC transporter ATP-binding protein; Pro 90.27
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 90.25
PRK14257329 phosphate ABC transporter ATP-binding protein; Pro 90.24
PRK03695248 vitamin B12-transporter ATPase; Provisional 90.24
COG4987573 CydC ABC-type transport system involved in cytochr 90.23
PF03308266 ArgK: ArgK protein; InterPro: IPR005129 Bacterial 90.2
PRK12727559 flagellar biosynthesis regulator FlhF; Provisional 90.18
cd02028179 UMPK_like Uridine monophosphate kinase_like (UMPK_ 90.17
PRK10636 638 putative ABC transporter ATP-binding protein; Prov 90.15
PRK08006471 replicative DNA helicase; Provisional 90.14
PF01926116 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I 90.1
PLN03073 718 ABC transporter F family; Provisional 90.1
PRK08233182 hypothetical protein; Provisional 90.04
COG3839338 MalK ABC-type sugar transport systems, ATPase comp 90.03
COG0488530 Uup ATPase components of ABC transporters with dup 90.01
PRK13642277 cbiO cobalt transporter ATP-binding subunit; Provi 89.92
TIGR01425429 SRP54_euk signal recognition particle protein SRP5 89.9
PRK07994 647 DNA polymerase III subunits gamma and tau; Validat 89.86
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 89.86
TIGR00959428 ffh signal recognition particle protein. This mode 89.85
TIGR03258362 PhnT 2-aminoethylphosphonate ABC transport system, 89.81
PRK05480209 uridine/cytidine kinase; Provisional 89.81
cd01130186 VirB11-like_ATPase Type IV secretory pathway compo 89.78
PRK10522547 multidrug transporter membrane component/ATP-bindi 89.76
cd03280200 ABC_MutS2 MutS2 homologs in bacteria and eukaryote 89.73
TIGR03269 520 met_CoM_red_A2 methyl coenzyme M reductase system, 89.69
PRK14956 484 DNA polymerase III subunits gamma and tau; Provisi 89.68
PRK00889175 adenylylsulfate kinase; Provisional 89.65
PRK10078186 ribose 1,5-bisphosphokinase; Provisional 89.64
KOG4658 889 consensus Apoptotic ATPase [Signal transduction me 89.62
PRK11607377 potG putrescine transporter ATP-binding subunit; P 89.61
COG1484254 DnaC DNA replication protein [DNA replication, rec 89.61
PRK14530215 adenylate kinase; Provisional 89.59
PRK09435332 membrane ATPase/protein kinase; Provisional 89.58
cd04138162 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, 89.56
PRK13636283 cbiO cobalt transporter ATP-binding subunit; Provi 89.56
CHL00181287 cbbX CbbX; Provisional 89.54
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 89.49
PRK11174588 cysteine/glutathione ABC transporter membrane/ATP- 89.45
TIGR01193708 bacteriocin_ABC ABC-type bacteriocin transporter. 89.4
TIGR02857529 CydD thiol reductant ABC exporter, CydD subunit. U 89.35
PRK14721420 flhF flagellar biosynthesis regulator FlhF; Provis 89.35
PRK11147 635 ABC transporter ATPase component; Reviewed 89.34
PF00910107 RNA_helicase: RNA helicase; InterPro: IPR000605 He 89.29
cd02023198 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. 89.29
PRK15064 530 ABC transporter ATP-binding protein; Provisional 89.28
PRK08084235 DNA replication initiation factor; Provisional 89.27
PRK14531183 adenylate kinase; Provisional 89.26
PRK06217183 hypothetical protein; Validated 89.24
COG4167267 SapF ABC-type antimicrobial peptide transport syst 89.24
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 89.21
COG1122235 CbiO ABC-type cobalt transport system, ATPase comp 89.21
PRK10762 501 D-ribose transporter ATP binding protein; Provisio 89.21
PF12846304 AAA_10: AAA-like domain 89.16
PRK10636638 putative ABC transporter ATP-binding protein; Prov 89.15
PRK06696223 uridine kinase; Validated 89.13
cd00876160 Ras Ras family. The Ras family of the Ras superfam 89.05
PRK11819 556 putative ABC transporter ATP-binding protein; Revi 89.04
TIGR03796710 NHPM_micro_ABC1 NHPM bacteriocin system ABC transp 89.03
COG1618179 Predicted nucleotide kinase [Nucleotide transport 88.98
PRK10790592 putative multidrug transporter membrane\ATP-bindin 88.98
PRK11160574 cysteine/glutathione ABC transporter membrane/ATP- 88.95
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-148  Score=1139.47  Aligned_cols=461  Identities=77%  Similarity=1.165  Sum_probs=450.6

Q ss_pred             ceeeEEEEECCeEEEEeC--CCCchhhhceEEeccCc-eeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCceec
Q 008638           86 AIGQVCQVIGAVVDVRFD--EGLPPILTALEVVDHSV-RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVP  162 (558)
Q Consensus        86 ~~G~V~~V~G~VVdv~F~--~gLp~i~~~Lev~~~~~-~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~~Vp  162 (558)
                      +.|+|+||+|+||||+|+  +.||.++++|++...+. .+++||++|+|++.||+|+|+.++||.+|+.|.+||+|++||
T Consensus         2 ~~G~vvqv~g~VvdV~F~~~~~lP~I~naL~~~~~~~~~~~leV~q~lg~~~VR~Iam~~t~gl~rg~~v~dtg~pi~VP   81 (468)
T COG0055           2 NKGKVVQVIGPVVDVEFPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMGSTDGLVRGLEVIDTGKPISVP   81 (468)
T ss_pred             CCceEEEEEeeEEEEEecCcccCchhhhhheeccCCcceEeeehHHHhCCCeEEEEEecCccCcccCcEEecCCCceEEe
Confidence            469999999999999997  35999999999987543 489999999999999999999999999999999999999999


Q ss_pred             cCccccceEEEEecccccccCCCccc--ccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCChh
Q 008638          163 VGRVTLGRIMNVIGEPIDEKGDLKTE--HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT  240 (558)
Q Consensus       163 VG~~lLGRV~d~lG~PiD~~~~i~~~--~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GKT  240 (558)
                      ||+.+||||+|++|+|||+.+++...  .+||||+++|.+.++.+..|+|+||||+||+|+|+.||+|+|||||+|||||
T Consensus        82 VG~~~lgri~nvlG~~iD~~~~~~~~~~~~~~Ih~~~p~~~e~~~~~EIleTGIKVIDll~P~~kGgKiGLFGGAGVGKT  161 (468)
T COG0055          82 VGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKT  161 (468)
T ss_pred             cchhhcccchhccCCcccccCCCCccccceeeccCCCCchhhcccchhhhhhCceEEEEecccccCceeeeeccCCccce
Confidence            99999999999999999999999866  8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHHH
Q 008638          241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE  320 (558)
Q Consensus       241 ~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiAE  320 (558)
                      +|++|+|+|+++.|++++||+++|||+||++|+|.||+|+|++        +||++|++||||||++|+|++++|+|+||
T Consensus       162 Vl~~ELI~Nia~~h~g~SVFaGvGERtREGndLy~Em~es~vl--------~ktalv~gQMNEpPGaR~RValtGlT~AE  233 (468)
T COG0055         162 VLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVL--------DKTALVFGQMNEPPGARMRVALTGLTMAE  233 (468)
T ss_pred             eeHHHHHHHHHHHcCCeEEEEeccccccchHHHHHHHHhcCCC--------CceeEEEeecCCCCcceeeehhhhhhHHH
Confidence            9999999999999999999999999999999999999999876        48999999999999999999999999999


Q ss_pred             HhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCCCch
Q 008638          321 HFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPA  400 (558)
Q Consensus       321 yfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~dpi  400 (558)
                      ||||++|+|||||+|||+||.||.+|||.+|||+||+.||||+|.++++.|+||++++++||||++|+||+|+||+|||.
T Consensus       234 yfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~PSavGYQpTLatemg~lQERItstk~GSITSiQavyvPaDDlTDPa  313 (468)
T COG0055         234 YFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSITSVQAVYVPADDLTDPA  313 (468)
T ss_pred             HhhcccCCeEEEEehhhhHHhhcchHHHHHhccCccccccCchhHHHHHHHHHHHhcCCCCceEEEEEEEeccccCCCcc
Confidence            99998899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChhHH
Q 008638          401 PATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDK  480 (558)
Q Consensus       401 p~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~~~  480 (558)
                      |.++|+|||++++|||++|++|+|||||||.|.||.++|.++|++||++|++++++|++|+||||||+|+|+|+||++||
T Consensus       314 pattFaHLDat~vLsR~ia~~GIyPAvDPL~StSr~l~p~ivGe~Hy~va~~vq~iLqrYkeLqDIIaILGmdELseedk  393 (468)
T COG0055         314 PATTFAHLDATTVLSRQIAALGIYPAVDPLDSTSRALDPKIVGEEHYEVAREVQSILQRYKELQDIIAILGMDELSEEDK  393 (468)
T ss_pred             hhhhhhhcccceeeeHhHHhcCCCcccCcccccccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhcChhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCccccccccCHHHHHHHHHHHHH
Q 008638          481 LTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIAK  554 (558)
Q Consensus       481 ~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~f~~~g~~~~~~~k~~~~~~  554 (558)
                      ++|.|||+|++||+|||+++|.|||.||+||+|+|||++|++|++|+||++||++|||||+|+|+.+|+++|.+
T Consensus       394 ~~V~rArki~~FlSQpF~vAE~FTg~pG~~V~l~dti~~fk~Il~G~yd~~pE~aF~~vGsi~e~~eka~~~~~  467 (468)
T COG0055         394 LTVARARKIQRFLSQPFFVAEVFTGSPGKYVPLKDTIRGFKRILEGKYDHLPEQAFYMVGSIEEAVEKAKKLGK  467 (468)
T ss_pred             HHHHHHHHHHHHhcCcchhhheecCCCceeeeHHHHHHHHHHHhCCCcccCCHHHHhhcCcHHHHHHHHHhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999864

>KOG1350 consensus F0F1-type ATP synthase, beta subunit [Energy production and conversion] Back     alignment and domain information
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta Back     alignment and domain information
>CHL00060 atpB ATP synthase CF1 beta subunit Back     alignment and domain information
>TIGR01039 atpD ATP synthase, F1 beta subunit Back     alignment and domain information
>PRK09280 F0F1 ATP synthase subunit beta; Validated Back     alignment and domain information
>PRK12597 F0F1 ATP synthase subunit beta; Provisional Back     alignment and domain information
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha Back     alignment and domain information
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional Back     alignment and domain information
>PTZ00185 ATPase alpha subunit; Provisional Back     alignment and domain information
>CHL00059 atpA ATP synthase CF1 alpha subunit Back     alignment and domain information
>PRK09281 F0F1 ATP synthase subunit alpha; Validated Back     alignment and domain information
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit Back     alignment and domain information
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit Back     alignment and domain information
>PRK04196 V-type ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK02118 V-type ATP synthase subunit B; Provisional Back     alignment and domain information
>PRK04192 V-type ATP synthase subunit A; Provisional Back     alignment and domain information
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit Back     alignment and domain information
>PRK06936 type III secretion system ATPase; Provisional Back     alignment and domain information
>PRK07165 F0F1 ATP synthase subunit alpha; Validated Back     alignment and domain information
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit Back     alignment and domain information
>PRK08927 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>PRK08972 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit Back     alignment and domain information
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI Back     alignment and domain information
>PRK05688 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI Back     alignment and domain information
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI Back     alignment and domain information
>PRK09099 type III secretion system ATPase; Provisional Back     alignment and domain information
>PRK06820 type III secretion system ATPase; Validated Back     alignment and domain information
>PRK07594 type III secretion system ATPase SsaN; Validated Back     alignment and domain information
>PRK08472 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>PRK07960 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>PRK05922 type III secretion system ATPase; Validated Back     alignment and domain information
>PRK08149 ATP synthase SpaL; Validated Back     alignment and domain information
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion] Back     alignment and domain information
>TIGR01026 fliI_yscN ATPase FliI/YscN family Back     alignment and domain information
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase Back     alignment and domain information
>PRK06002 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>PRK07196 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>PRK07721 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>PRK06793 fliI flagellum-specific ATP synthase; Validated Back     alignment and domain information
>PRK06315 type III secretion system ATPase; Provisional Back     alignment and domain information
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B Back     alignment and domain information
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain Back     alignment and domain information
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein Back     alignment and domain information
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain Back     alignment and domain information
>PRK14698 V-type ATP synthase subunit A; Provisional Back     alignment and domain information
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A Back     alignment and domain information
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion] Back     alignment and domain information
>KOG1352 consensus Vacuolar H+-ATPase V1 sector, subunit A [Energy production and conversion] Back     alignment and domain information
>PRK12608 transcription termination factor Rho; Provisional Back     alignment and domain information
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion] Back     alignment and domain information
>PRK12678 transcription termination factor Rho; Provisional Back     alignment and domain information
>PRK09376 rho transcription termination factor Rho; Provisional Back     alignment and domain information
>KOG1351 consensus Vacuolar H+-ATPase V1 sector, subunit B [Energy production and conversion] Back     alignment and domain information
>TIGR00767 rho transcription termination factor Rho Back     alignment and domain information
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase Back     alignment and domain information
>COG1158 Rho Transcription termination factor [Transcription] Back     alignment and domain information
>KOG1353 consensus F0F1-type ATP synthase, alpha subunit [Energy production and conversion] Back     alignment and domain information
>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>PF02874 ATP-synt_ab_N: ATP synthase alpha/beta family, beta-barrel domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR004100 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF11421 Synthase_beta: ATP synthase F1 beta subunit; InterPro: IPR020971 F-type ATPases have 2 components, CF1 - the catalytic core - and CF0 - the membrane proton channel Back     alignment and domain information
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical Back     alignment and domain information
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>cd01394 radB RadB Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>PRK09302 circadian clock protein KaiC; Reviewed Back     alignment and domain information
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B Back     alignment and domain information
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family Back     alignment and domain information
>TIGR02012 tigrfam_recA protein RecA Back     alignment and domain information
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>PRK09354 recA recombinase A; Provisional Back     alignment and domain information
>TIGR02236 recomb_radA DNA repair and recombination protein RadA Back     alignment and domain information
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>PRK09361 radB DNA repair and recombination protein RadB; Provisional Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family Back     alignment and domain information
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional Back     alignment and domain information
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases Back     alignment and domain information
>PRK04328 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02655 circ_KaiC circadian clock protein KaiC Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion] Back     alignment and domain information
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1 Back     alignment and domain information
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family Back     alignment and domain information
>PTZ00035 Rad51 protein; Provisional Back     alignment and domain information
>PRK09302 circadian clock protein KaiC; Reviewed Back     alignment and domain information
>TIGR02237 recomb_radB DNA repair and recombination protein RadB Back     alignment and domain information
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family Back     alignment and domain information
>PRK09519 recA DNA recombination protein RecA; Reviewed Back     alignment and domain information
>PRK04301 radA DNA repair and recombination protein RadA; Validated Back     alignment and domain information
>TIGR00416 sms DNA repair protein RadA Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>PLN03186 DNA repair protein RAD51 homolog; Provisional Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>PRK11823 DNA repair protein RadA; Provisional Back     alignment and domain information
>TIGR02239 recomb_RAD51 DNA repair protein RAD51 Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>PRK05973 replicative DNA helicase; Provisional Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response [] Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] Back     alignment and domain information
>TIGR00665 DnaB replicative DNA helicase Back     alignment and domain information
>cd00984 DnaB_C DnaB helicase C terminal domain Back     alignment and domain information
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork Back     alignment and domain information
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair] Back     alignment and domain information
>cd01125 repA Hexameric Replicative Helicase RepA Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes Back     alignment and domain information
>PRK05748 replicative DNA helicase; Provisional Back     alignment and domain information
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases Back     alignment and domain information
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids Back     alignment and domain information
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis Back     alignment and domain information
>PRK09165 replicative DNA helicase; Provisional Back     alignment and domain information
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] Back     alignment and domain information
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) Back     alignment and domain information
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment Back     alignment and domain information
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily Back     alignment and domain information
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit Back     alignment and domain information
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C Back     alignment and domain information
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) Back     alignment and domain information
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein Back     alignment and domain information
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient Back     alignment and domain information
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane Back     alignment and domain information
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems Back     alignment and domain information
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota Back     alignment and domain information
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids Back     alignment and domain information
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein Back     alignment and domain information
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein Back     alignment and domain information
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group Back     alignment and domain information
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein Back     alignment and domain information
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion Back     alignment and domain information
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system Back     alignment and domain information
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE Back     alignment and domain information
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import Back     alignment and domain information
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin Back     alignment and domain information
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP Back     alignment and domain information
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C Back     alignment and domain information
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) Back     alignment and domain information
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules Back     alignment and domain information
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota Back     alignment and domain information
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively Back     alignment and domain information
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup Back     alignment and domain information
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids Back     alignment and domain information
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system Back     alignment and domain information
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR00455 apsK adenylylsulfate kinase (apsK) Back     alignment and domain information
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea Back     alignment and domain information
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake Back     alignment and domain information
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases Back     alignment and domain information
>PRK08118 topology modulation protein; Reviewed Back     alignment and domain information
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter Back     alignment and domain information
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK Back     alignment and domain information
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR02673 FtsE cell division ATP-binding protein FtsE Back     alignment and domain information
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E Back     alignment and domain information
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters Back     alignment and domain information
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine Back     alignment and domain information
>PHA02542 41 41 helicase; Provisional Back     alignment and domain information
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters Back     alignment and domain information
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins Back     alignment and domain information
>TIGR01978 sufC FeS assembly ATPase SufC Back     alignment and domain information
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional Back     alignment and domain information
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively Back     alignment and domain information
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK07261 topology modulation protein; Provisional Back     alignment and domain information
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A Back     alignment and domain information
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C Back     alignment and domain information
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional Back     alignment and domain information
>PRK14240 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed Back     alignment and domain information
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment Back     alignment and domain information
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) Back     alignment and domain information
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export Back     alignment and domain information
>PRK08760 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit Back     alignment and domain information
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D Back     alignment and domain information
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional Back     alignment and domain information
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion Back     alignment and domain information
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) Back     alignment and domain information
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome Back     alignment and domain information
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria Back     alignment and domain information
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14242 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD Back     alignment and domain information
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds Back     alignment and domain information
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional Back     alignment and domain information
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated Back     alignment and domain information
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD Back     alignment and domain information
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance Back     alignment and domain information
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional Back     alignment and domain information
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>PRK14241 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>PRK05595 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional Back     alignment and domain information
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain Back     alignment and domain information
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D Back     alignment and domain information
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional Back     alignment and domain information
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK Back     alignment and domain information
>PRK14239 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL Back     alignment and domain information
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional Back     alignment and domain information
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK07004 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK10908 cell division protein FtsE; Provisional Back     alignment and domain information
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI Back     alignment and domain information
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein Back     alignment and domain information
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) Back     alignment and domain information
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA Back     alignment and domain information
>PRK08506 replicative DNA helicase; Provisional Back     alignment and domain information
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional Back     alignment and domain information
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B Back     alignment and domain information
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03290 ABCC_SUR1_N The SUR domain 1 Back     alignment and domain information
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A Back     alignment and domain information
>PRK14237 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14243 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component Back     alignment and domain information
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit Back     alignment and domain information
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules Back     alignment and domain information
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed Back     alignment and domain information
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional Back     alignment and domain information
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function Back     alignment and domain information
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters Back     alignment and domain information
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake Back     alignment and domain information
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit Back     alignment and domain information
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE Back     alignment and domain information
>PRK14238 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK07773 replicative DNA helicase; Validated Back     alignment and domain information
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor Back     alignment and domain information
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional Back     alignment and domain information
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor Back     alignment and domain information
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) Back     alignment and domain information
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes Back     alignment and domain information
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component Back     alignment and domain information
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules Back     alignment and domain information
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 Back     alignment and domain information
>PRK06904 replicative DNA helicase; Validated Back     alignment and domain information
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein Back     alignment and domain information
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit Back     alignment and domain information
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea Back     alignment and domain information
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors Back     alignment and domain information
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family Back     alignment and domain information
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional Back     alignment and domain information
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional Back     alignment and domain information
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional Back     alignment and domain information
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK08840 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] Back     alignment and domain information
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>TIGR01618 phage_P_loop phage nucleotide-binding protein Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK13651 cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters Back     alignment and domain information
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export Back     alignment and domain information
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional Back     alignment and domain information
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB Back     alignment and domain information
>PRK14235 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>CHL00131 ycf16 sulfate ABC transporter protein; Validated Back     alignment and domain information
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03288 ABCC_SUR2 The SUR domain 2 Back     alignment and domain information
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional Back     alignment and domain information
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional Back     alignment and domain information
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A Back     alignment and domain information
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS) Back     alignment and domain information
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA Back     alignment and domain information
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional Back     alignment and domain information
>PTZ00301 uridine kinase; Provisional Back     alignment and domain information
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 Back     alignment and domain information
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth Back     alignment and domain information
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C Back     alignment and domain information
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] Back     alignment and domain information
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway Back     alignment and domain information
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>TIGR00750 lao LAO/AO transport system ATPase Back     alignment and domain information
>PRK05636 replicative DNA helicase; Provisional Back     alignment and domain information
>cd03299 ABC_ModC_like Archeal protein closely related to ModC Back     alignment and domain information
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional Back     alignment and domain information
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK13536 nodulation factor exporter subunit NodI; Provisional Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PRK13633 cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK03846 adenylylsulfate kinase; Provisional Back     alignment and domain information
>PRK14236 phosphate transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>PRK13537 nodulation ABC transporter NodI; Provisional Back     alignment and domain information
>PRK00300 gmk guanylate kinase; Provisional Back     alignment and domain information
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed Back     alignment and domain information
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PRK05541 adenylylsulfate kinase; Provisional Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR03263 guanyl_kin guanylate kinase Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR00235 udk uridine kinase Back     alignment and domain information
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed Back     alignment and domain information
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] Back     alignment and domain information
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>PRK06321 replicative DNA helicase; Provisional Back     alignment and domain information
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit Back     alignment and domain information
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] Back     alignment and domain information
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK03695 vitamin B12-transporter ATPase; Provisional Back     alignment and domain information
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components Back     alignment and domain information
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2 Back     alignment and domain information
>PRK10636 putative ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK08006 replicative DNA helicase; Provisional Back     alignment and domain information
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse Back     alignment and domain information
>PLN03073 ABC transporter F family; Provisional Back     alignment and domain information
>PRK08233 hypothetical protein; Provisional Back     alignment and domain information
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] Back     alignment and domain information
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>TIGR01425 SRP54_euk signal recognition particle protein SRP54 Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>TIGR00959 ffh signal recognition particle protein Back     alignment and domain information
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT Back     alignment and domain information
>PRK05480 uridine/cytidine kinase; Provisional Back     alignment and domain information
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases Back     alignment and domain information
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional Back     alignment and domain information
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes Back     alignment and domain information
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK00889 adenylylsulfate kinase; Provisional Back     alignment and domain information
>PRK10078 ribose 1,5-bisphosphokinase; Provisional Back     alignment and domain information
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14530 adenylate kinase; Provisional Back     alignment and domain information
>PRK09435 membrane ATPase/protein kinase; Provisional Back     alignment and domain information
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily Back     alignment and domain information
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed Back     alignment and domain information
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter Back     alignment and domain information
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit Back     alignment and domain information
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK11147 ABC transporter ATPase component; Reviewed Back     alignment and domain information
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5) Back     alignment and domain information
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 Back     alignment and domain information
>PRK15064 ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PRK14531 adenylate kinase; Provisional Back     alignment and domain information
>PRK06217 hypothetical protein; Validated Back     alignment and domain information
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10762 D-ribose transporter ATP binding protein; Provisional Back     alignment and domain information
>PF12846 AAA_10: AAA-like domain Back     alignment and domain information
>PRK10636 putative ABC transporter ATP-binding protein; Provisional Back     alignment and domain information
>PRK06696 uridine kinase; Validated Back     alignment and domain information
>cd00876 Ras Ras family Back     alignment and domain information
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed Back     alignment and domain information
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein Back     alignment and domain information
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional Back     alignment and domain information
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query558
1mab_B479 Rat Liver F1-Atpase Length = 479 0.0
4asu_D480 F1-Atpase In Which All Three Catalytic Sites Contai 0.0
1cow_D482 Bovine Mitochondrial F1-Atpase Complexed With Aurov 0.0
1nbm_D480 The Structure Of Bovine F1-Atpase Covalently Inhibi 0.0
2w6e_D528 Low Resolution Structures Of Bovine Mitochondrial F 0.0
2xnd_D467 Crystal Structure Of Bovine F1-C8 Sub-Complex Of At 0.0
1nbm_E480 The Structure Of Bovine F1-Atpase Covalently Inhibi 0.0
2xok_D511 Refined Structure Of Yeast F1c10 Atpase Complex To 0.0
3fks_D484 Yeast F1 Atpase In The Absence Of Bound Nucleotides 0.0
2hld_D478 Crystal Structure Of Yeast Mitochondrial F1-Atpase 0.0
4b2q_D470 Model Of The Yeast F1fo-Atp Synthase Dimer Based On 0.0
4b2q_E473 Model Of The Yeast F1fo-Atp Synthase Dimer Based On 0.0
3oeh_D484 Structure Of Four Mutant Forms Of Yeast F1 Atpase: 0.0
2qe7_D462 Crystal Structure Of The F1-Atpase From The Thermoa 0.0
3oaa_D459 Structure Of The E.Coli F1-Atp Synthase Inhibited B 1e-180
1sky_E473 Crystal Structure Of The Nucleotide Free Alpha3beta 1e-178
1fx0_B498 Crystal Structure Of The Chloroplast F1-Atpase From 1e-174
2obl_A347 Structural And Biochemical Analysis Of A Prototypic 5e-35
2dpy_A438 Crystal Structure Of The Flagellar Type Iii Atpase 2e-30
3gqb_B464 Crystal Structure Of The A3b3 Complex From V-atpase 2e-29
3a5c_D478 Inter-Subunit Interaction And Quaternary Rearrangem 2e-29
3a5c_A578 Inter-Subunit Interaction And Quaternary Rearrangem 2e-26
3gqb_A578 Crystal Structure Of The A3b3 Complex From V-atpase 8e-26
3vr6_D465 Crystal Structure Of Amp-pnp Bound Enterococcus Hir 1e-25
3mfy_A588 Structural Characterization Of The Subunit A Mutant 3e-25
3vr6_A600 Crystal Structure Of Amp-pnp Bound Enterococcus Hir 8e-25
3m4y_A588 Structural Characterization Of The Subunit A Mutant 1e-24
3ikj_A588 Structural Characterization For The Nucleotide Bind 1e-24
3sdz_A588 Structural Characterization Of The Subunit A Mutant 1e-24
1vdz_A588 Crystal Structure Of A-Type Atpase Catalytic Subuni 2e-24
3i4l_A588 Structural Characterization For The Nucleotide Bind 2e-24
3se0_A588 Structural Characterization Of The Subunit A Mutant 2e-24
3vr2_A600 Crystal Structure Of Nucleotide-free A3b3 Complex F 2e-24
3ssa_A460 Crystal Structure Of Subunit B Mutant N157t Of The 3e-24
3qjy_A588 Crystal Structure Of P-Loop G234a Mutant Of Subunit 7e-24
3qia_A588 Crystal Structure Of P-Loop G237a Mutant Of Subunit 7e-24
3nd9_A588 Structural Characterization For The Nucleotide Bind 7e-24
3qg1_A588 Crystal Structure Of P-Loop G239a Mutant Of Subunit 8e-24
3nd8_A588 Structural Characterization For The Nucleotide Bind 8e-24
2rkw_A469 Intermediate Position Of Atp On Its Trail To The Bi 8e-24
3tgw_A460 Crystal Structure Of Subunit B Mutant H156a Of The 9e-24
3tiv_A460 Crystal Structure Of Subunit B Mutant N157a Of The 9e-24
2c61_A469 Crystal Structure Of The Non-Catalytic B Subunit Of 9e-24
3oaa_A513 Structure Of The E.Coli F1-Atp Synthase Inhibited B 4e-23
3vr2_D465 Crystal Structure Of Nucleotide-free A3b3 Complex F 7e-23
2qe7_A502 Crystal Structure Of The F1-Atpase From The Thermoa 5e-22
1sky_B502 Crystal Structure Of The Nucleotide Free Alpha3beta 2e-19
2r9v_A515 Crystal Structure Of Atp Synthase Subunit Alpha (Tm 2e-18
2xnd_A492 Crystal Structure Of Bovine F1-C8 Sub-Complex Of At 5e-18
1ohh_B487 Bovine Mitochondrial F1-Atpase Complexed With The I 5e-18
4b2q_B486 Model Of The Yeast F1fo-Atp Synthase Dimer Based On 7e-18
1cow_A510 Bovine Mitochondrial F1-Atpase Complexed With Aurov 7e-18
4b2q_A485 Model Of The Yeast F1fo-Atp Synthase Dimer Based On 7e-18
1bmf_A510 Bovine Mitochondrial F1-Atpase Length = 510 7e-18
2w6e_A553 Low Resolution Structures Of Bovine Mitochondrial F 7e-18
2jiz_A510 The Structure Of F1-Atpase Inhibited By Resveratrol 7e-18
3ofn_A510 Structure Of Four Mutant Forms Of Yeast F1 Atpase: 9e-18
2hld_A510 Crystal Structure Of Yeast Mitochondrial F1-Atpase 1e-17
2xok_A545 Refined Structure Of Yeast F1c10 Atpase Complex To 1e-17
2f43_A510 Rat Liver F1-atpase Length = 510 2e-17
1mab_A510 Rat Liver F1-Atpase Length = 510 2e-17
3oee_A510 Structure Of Four Mutant Forms Of Yeast F1 Atpase: 2e-17
1fx0_A507 Crystal Structure Of The Chloroplast F1-Atpase From 3e-16
3l0o_A427 Structure Of Rna-Free Rho Transcription Termination 1e-04
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase Length = 479 Back     alignment and structure 
Iteration: 1

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/455 (81%), Positives = 407/455 (89%), Gaps = 2/455 (0%)
Query: 86  AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEG 145
           A GQ+  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE  VRTIAMDGTEG
Sbjct: 9   ATGQIVAVIGAVVDVQFDEGLPPILNALEVQGRESRLVLEVAQHLGESTVRTIAMDGTEG 68
Query: 146 LVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQAT 205
           LVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ + PIH EAP F+E + 
Sbjct: 69  LVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEMSV 128
Query: 206 EQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265
           EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGE
Sbjct: 129 EQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE 188
Query: 266 RTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA 325
           RTREGNDLY EMIESGVI L  K A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD 
Sbjct: 189 RTREGNDLYHEMIESGVINL--KDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQ 246
Query: 326 EGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITS 385
           EGQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G +QERITTTKKGSITS
Sbjct: 247 EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITS 306
Query: 386 VQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEE 445
           VQAIYVPADDLTDPAPATTFAHLDATTVLSR I+ELGIYPAVDPLDSTSR++ P+I+G E
Sbjct: 307 VQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSE 366
Query: 446 HYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTG 505
           HY+ ARGVQK+LQ+YK+LQDIIAILGMDELSE+DKLTV+RARKIQRFLSQPF VAEVFTG
Sbjct: 367 HYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTG 426
Query: 506 APGKYVELKESIASFQGVLDGKYDDLPEQSFYMVG 540
             GK V LKE+I  FQ +L G YD LPEQ+FYMVG
Sbjct: 427 HMGKLVPLKETIKGFQQILAGDYDHLPEQAFYMVG 461
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound Nucleotide, With Magnesium Ion Released In The Empty Site Length = 480 Back     alignment and structure
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B Length = 482 Back     alignment and structure
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited With 4-Chloro-7-Nitrobenzofurazan Length = 480 Back     alignment and structure
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial F1-Atpase During Controlled Dehydration: Hydration State 1. Length = 528 Back     alignment and structure
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp Synthase Length = 467 Back     alignment and structure
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited With 4-Chloro-7-Nitrobenzofurazan Length = 480 Back     alignment and structure
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A Resolution Length = 511 Back     alignment and structure
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides Length = 484 Back     alignment and structure
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase Length = 478 Back     alignment and structure
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On Subtomogram Average Length = 470 Back     alignment and structure
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On Subtomogram Average Length = 473 Back     alignment and structure
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase: Beta-V279f Length = 484 Back     alignment and structure
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1 Length = 462 Back     alignment and structure
>pdb|3OAA|D Chain D, Structure Of The E.Coli F1-Atp Synthase Inhibited By Subunit Epsilon Length = 459 Back     alignment and structure
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3 Sub-Complex Of F1-Atpase From The Thermophilic Bacillus Ps3 Length = 473 Back     alignment and structure
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From Spinach Length = 498 Back     alignment and structure
>pdb|2OBL|A Chain A, Structural And Biochemical Analysis Of A Prototypical Atpase From The Type Iii Secretion System Of Pathogenic Bacteria Length = 347 Back     alignment and structure
>pdb|2DPY|A Chain A, Crystal Structure Of The Flagellar Type Iii Atpase Flii Length = 438 Back     alignment and structure
>pdb|3GQB|B Chain B, Crystal Structure Of The A3b3 Complex From V-atpase Length = 464 Back     alignment and structure
>pdb|3A5C|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement Defined By The Central Stalk Of Prokaryotic V1-Atpase Length = 478 Back     alignment and structure
>pdb|3A5C|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement Defined By The Central Stalk Of Prokaryotic V1-Atpase Length = 578 Back     alignment and structure
>pdb|3GQB|A Chain A, Crystal Structure Of The A3b3 Complex From V-atpase Length = 578 Back     alignment and structure
>pdb|3VR6|D Chain D, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae V1-atpase [bv1] Length = 465 Back     alignment and structure
>pdb|3MFY|A Chain A, Structural Characterization Of The Subunit A Mutant F236a Of The A-Atp Synthase From Pyrococcus Horikoshii Length = 588 Back     alignment and structure
>pdb|3VR6|A Chain A, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae V1-atpase [bv1] Length = 600 Back     alignment and structure
>pdb|3M4Y|A Chain A, Structural Characterization Of The Subunit A Mutant P235a Of The A-Atp Synthase Length = 588 Back     alignment and structure
>pdb|3IKJ|A Chain A, Structural Characterization For The Nucleotide Binding Ability Of Subunit A Mutant S238a Of The A1ao Atp Synthase Length = 588 Back     alignment and structure
>pdb|3SDZ|A Chain A, Structural Characterization Of The Subunit A Mutant F427w Of The A-Atp Synthase From Pyrococcus Horikoshii Length = 588 Back     alignment and structure
>pdb|1VDZ|A Chain A, Crystal Structure Of A-Type Atpase Catalytic Subunit A From Pyrococcus Horikoshii Ot3 Length = 588 Back     alignment and structure
>pdb|3I4L|A Chain A, Structural Characterization For The Nucleotide Binding Ability Of Subunit A With Amp-Pnp Of The A1ao Atp Synthase Length = 588 Back     alignment and structure
>pdb|3SE0|A Chain A, Structural Characterization Of The Subunit A Mutant F508w Of The A-Atp Synthase From Pyrococcus Horikoshii Length = 588 Back     alignment and structure
>pdb|3VR2|A Chain A, Crystal Structure Of Nucleotide-free A3b3 Complex From Enterococcus Hirae V-atpase [ea3b3] Length = 600 Back     alignment and structure
>pdb|3SSA|A Chain A, Crystal Structure Of Subunit B Mutant N157t Of The A1ao Atp Synthase Length = 460 Back     alignment and structure
>pdb|3QJY|A Chain A, Crystal Structure Of P-Loop G234a Mutant Of Subunit A Of The A1ao Atp Synthase Length = 588 Back     alignment and structure
>pdb|3QIA|A Chain A, Crystal Structure Of P-Loop G237a Mutant Of Subunit A Of The A1ao Atp Synthase Length = 588 Back     alignment and structure
>pdb|3ND9|A Chain A, Structural Characterization For The Nucleotide Binding Ability Of Subunit A Of The A1ao Atp Synthase Length = 588 Back     alignment and structure
>pdb|3QG1|A Chain A, Crystal Structure Of P-Loop G239a Mutant Of Subunit A Of The A1ao Atp Synthase Length = 588 Back     alignment and structure
>pdb|3ND8|A Chain A, Structural Characterization For The Nucleotide Binding Ability Of Subunit A Of The A1ao Atp Synthase Length = 588 Back     alignment and structure
>pdb|2RKW|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding Pocket Inside The Subunit B Mutant R416w Of The Energy Converter A1ao Atp Synthase Length = 469 Back     alignment and structure
>pdb|3TGW|A Chain A, Crystal Structure Of Subunit B Mutant H156a Of The A1ao Atp Synthase Length = 460 Back     alignment and structure
>pdb|3TIV|A Chain A, Crystal Structure Of Subunit B Mutant N157a Of The A1ao Atp Synthase Length = 460 Back     alignment and structure
>pdb|2C61|A Chain A, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type Atpase From M. Mazei Go1 Length = 469 Back     alignment and structure
>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By Subunit Epsilon Length = 513 Back     alignment and structure
>pdb|3VR2|D Chain D, Crystal Structure Of Nucleotide-free A3b3 Complex From Enterococcus Hirae V-atpase [ea3b3] Length = 465 Back     alignment and structure
>pdb|2QE7|A Chain A, Crystal Structure Of The F1-Atpase From The Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1 Length = 502 Back     alignment and structure
>pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Free Alpha3beta3 Sub-Complex Of F1-Atpase From The Thermophilic Bacillus Ps3 Length = 502 Back     alignment and structure
>pdb|2R9V|A Chain A, Crystal Structure Of Atp Synthase Subunit Alpha (Tm1612) From Thermotoga Maritima At 2.10 A Resolution Length = 515 Back     alignment and structure
>pdb|2XND|A Chain A, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp Synthase Length = 492 Back     alignment and structure
>pdb|1OHH|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Inhibitor Protein If1 Length = 487 Back     alignment and structure
>pdb|4B2Q|B Chain B, Model Of The Yeast F1fo-Atp Synthase Dimer Based On Subtomogram Average Length = 486 Back     alignment and structure
>pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B Length = 510 Back     alignment and structure
>pdb|4B2Q|A Chain A, Model Of The Yeast F1fo-Atp Synthase Dimer Based On Subtomogram Average Length = 485 Back     alignment and structure
>pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase Length = 510 Back     alignment and structure
>pdb|2W6E|A Chain A, Low Resolution Structures Of Bovine Mitochondrial F1-Atpase During Controlled Dehydration: Hydration State 1. Length = 553 Back     alignment and structure
>pdb|2JIZ|A Chain A, The Structure Of F1-Atpase Inhibited By Resveratrol. Length = 510 Back     alignment and structure
>pdb|3OFN|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase: Alpha-N67i Length = 510 Back     alignment and structure
>pdb|2HLD|A Chain A, Crystal Structure Of Yeast Mitochondrial F1-Atpase Length = 510 Back     alignment and structure
>pdb|2XOK|A Chain A, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A Resolution Length = 545 Back     alignment and structure
>pdb|2F43|A Chain A, Rat Liver F1-atpase Length = 510 Back     alignment and structure
>pdb|1MAB|A Chain A, Rat Liver F1-Atpase Length = 510 Back     alignment and structure
>pdb|3OEE|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase: Alpha-F405s Length = 510 Back     alignment and structure
>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From Spinach Length = 507 Back     alignment and structure
>pdb|3L0O|A Chain A, Structure Of Rna-Free Rho Transcription Termination Factor From Thermotoga Maritima Length = 427 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query558
2ck3_D482 ATP synthase subunit beta\, mitochondrial; hydrola 0.0
1fx0_B498 ATP synthase beta chain; latent ATPase, thermal st 0.0
1sky_E473 F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp 0.0
3gqb_A578 V-type ATP synthase alpha chain; A3B3, V-ATPase, A 1e-171
3gqb_A 578 V-type ATP synthase alpha chain; A3B3, V-ATPase, A 2e-06
3mfy_A588 V-type ATP synthase alpha chain; A-type ATP syntha 1e-166
3mfy_A 588 V-type ATP synthase alpha chain; A-type ATP syntha 7e-12
3gqb_B464 V-type ATP synthase beta chain; A3B3, V-ATPase, AT 1e-112
2c61_A469 A-type ATP synthase non-catalytic subunit B; hydro 2e-76
2obl_A347 ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O 4e-68
2dpy_A438 FLII, flagellum-specific ATP synthase; beta barrel 2e-67
2qe7_A502 ATP synthase subunit alpha; blockage of ATP hydrol 7e-20
2r9v_A515 ATP synthase subunit alpha; TM1612, structural gen 8e-20
1fx0_A507 ATP synthase alpha chain; latent ATPase, thermal s 1e-19
2ck3_A510 ATP synthase subunit alpha\, mitochondrial; hydrol 2e-18
3oaa_A513 ATP synthase subunit alpha; rossmann fold, hydrola 2e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-17
1pyv_A54 ATP synthase beta chain, mitochondrial precursor; 1e-05
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ... Length = 482 Back     alignment and structure
 Score = 1005 bits (2600), Expect = 0.0
 Identities = 380/484 (78%), Positives = 422/484 (87%), Gaps = 2/484 (0%)

Query: 74  GGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEG 133
             + +         G++  VIGAVVDV+FDEGLPPIL ALEV     RLVLEVAQH+GE 
Sbjct: 1   AAQASPSPKAGATTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGES 60

Query: 134 VVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPI 193
            VRTIAMDGTEGLVRGQ+VL++G+PI +PVG  TLGRIMNVIGEPIDE+G +KT+ +  I
Sbjct: 61  TVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAI 120

Query: 194 HREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 253
           H EAP FVE + EQ+ILVTGIKVVDLLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKA
Sbjct: 121 HAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKA 180

Query: 254 HGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGL 313
           HGG+SVFAGVGERTREGNDLY EMIESGVI L D  A SK ALVYGQMNEPPGARARV L
Sbjct: 181 HGGYSVFAGVGERTREGNDLYHEMIESGVINLKD--ATSKVALVYGQMNEPPGARARVAL 238

Query: 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQE 373
           TGLTVAE+FRD EGQDVLLFIDNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G +QE
Sbjct: 239 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQE 298

Query: 374 RITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDST 433
           RITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSR I+ELGIYPAVDPLDST
Sbjct: 299 RITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDST 358

Query: 434 SRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFL 493
           SR++ P+I+G EHY+ ARGVQK+LQ+YK+LQDIIAILGMDELSE+DKLTV+RARKIQRFL
Sbjct: 359 SRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFL 418

Query: 494 SQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIA 553
           SQPF VAEVFTG  GK V LKE+I  FQ +L G+YD LPEQ+FYMVG IEE +AKA+K+A
Sbjct: 419 SQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLA 478

Query: 554 KESA 557
           +E +
Sbjct: 479 EEHS 482
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B* Length = 498 Back     alignment and structure
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 Length = 473 Back     alignment and structure
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C Length = 578 Back     alignment and structure
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C Length = 578 Back     alignment and structure
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A Length = 588 Back     alignment and structure
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A Length = 588 Back     alignment and structure
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D* Length = 464 Back     alignment and structure
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A* Length = 469 Back     alignment and structure
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* Length = 347 Back     alignment and structure
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} Length = 438 Back     alignment and structure
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B Length = 502 Back     alignment and structure
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8} Length = 515 Back     alignment and structure
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A* Length = 507 Back     alignment and structure
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ... Length = 510 Back     alignment and structure
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A Length = 513 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1pyv_A ATP synthase beta chain, mitochondrial precursor; hydrolase; NMR {Nicotiana plumbaginifolia} SCOP: j.36.4.1 Length = 54 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query558
1fx0_B498 ATP synthase beta chain; latent ATPase, thermal st 100.0
2ck3_D482 ATP synthase subunit beta\, mitochondrial; hydrola 100.0
1sky_E473 F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp 100.0
3oaa_A513 ATP synthase subunit alpha; rossmann fold, hydrola 100.0
2ck3_A510 ATP synthase subunit alpha\, mitochondrial; hydrol 100.0
2qe7_A502 ATP synthase subunit alpha; blockage of ATP hydrol 100.0
2r9v_A515 ATP synthase subunit alpha; TM1612, structural gen 100.0
1fx0_A507 ATP synthase alpha chain; latent ATPase, thermal s 100.0
2c61_A469 A-type ATP synthase non-catalytic subunit B; hydro 100.0
3vr4_D465 V-type sodium ATPase subunit D; V-ATPase, rotary m 100.0
3gqb_B464 V-type ATP synthase beta chain; A3B3, V-ATPase, AT 100.0
3vr4_A600 V-type sodium ATPase catalytic subunit A; V-ATPase 100.0
3gqb_A578 V-type ATP synthase alpha chain; A3B3, V-ATPase, A 100.0
3mfy_A588 V-type ATP synthase alpha chain; A-type ATP syntha 100.0
3l0o_A427 Transcription termination factor RHO; helicase, RH 100.0
3ice_A422 Transcription termination factor RHO; transcriptio 100.0
2dpy_A438 FLII, flagellum-specific ATP synthase; beta barrel 100.0
2obl_A347 ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O 100.0
2zts_A251 Putative uncharacterized protein PH0186; KAIC like 97.51
3io5_A333 Recombination and repair protein; storage dimer, i 97.43
2w0m_A235 SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus 97.37
2ehv_A251 Hypothetical protein PH0186; KAIC, RECA ATPase, un 97.34
2zr9_A349 Protein RECA, recombinase A; recombination, RECA m 97.16
3hr8_A356 Protein RECA; alpha and beta proteins (A/B, A+B), 97.1
2dr3_A247 UPF0273 protein PH0284; RECA superfamily ATPase, h 97.09
2cvh_A220 DNA repair and recombination protein RADB; filamen 97.09
2z43_A324 DNA repair and recombination protein RADA; archaea 97.08
1v5w_A343 DMC1, meiotic recombination protein DMC1/LIM15 hom 97.0
1n0w_A243 DNA repair protein RAD51 homolog 1; DNA repair, ho 96.96
1xp8_A366 RECA protein, recombinase A; recombination, radior 96.92
1u94_A356 RECA protein, recombinase A; homologous recombinat 96.86
1pyv_A54 ATP synthase beta chain, mitochondrial precursor; 96.86
4a74_A231 DNA repair and recombination protein RADA; hydrola 96.85
3lda_A400 DNA repair protein RAD51; DNA binding protein, ATP 96.71
2i1q_A322 DNA repair and recombination protein RADA; ATPase, 96.62
1cr0_A296 DNA primase/helicase; RECA-type protein fold, tran 96.32
3bs4_A260 Uncharacterized protein PH0321; structural genomic 96.29
1nlf_A279 Regulatory protein REPA; replicative DNA helicase 96.17
1pzn_A349 RAD51, DNA repair and recombination protein RAD51, 95.99
2v1u_A387 Cell division control protein 6 homolog; DNA repli 95.93
3cmw_A 1706 Protein RECA, recombinase A; homologous recombinat 95.9
3bh0_A315 DNAB-like replicative helicase; ATPase, replicatio 95.89
2r6a_A454 DNAB helicase, replicative helicase; replication, 95.77
3cmu_A 2050 Protein RECA, recombinase A; homologous recombinat 95.7
3cmw_A 1706 Protein RECA, recombinase A; homologous recombinat 95.56
2q6t_A444 DNAB replication FORK helicase; hydrolase; 2.90A { 95.41
3cmu_A 2050 Protein RECA, recombinase A; homologous recombinat 95.39
3bgw_A444 DNAB-like replicative helicase; ATPase, replicatio 95.36
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 95.34
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 95.25
1w5s_A412 Origin recognition complex subunit 2 ORC2; replica 95.15
4a1f_A338 DNAB helicase, replicative DNA helicase; hydrolase 95.14
1zp6_A191 Hypothetical protein ATU3015; alpha-beta protein., 95.11
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 94.79
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 94.74
1q57_A503 DNA primase/helicase; dntpase, DNA replication, tr 94.7
1tf7_A 525 KAIC; homohexamer, hexamer, circadian clock protei 94.65
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 94.52
2yhs_A503 FTSY, cell division protein FTSY; cell cycle, prot 94.52
1znw_A207 Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans 94.51
1z6g_A218 Guanylate kinase; structural genomics, SGC, struct 94.45
2vhj_A331 Ntpase P4, P4; non- hydrolysable ATP analogue, hyd 94.44
3tr0_A205 Guanylate kinase, GMP kinase; purines, pyrimidines 94.29
4eun_A200 Thermoresistant glucokinase; putative sugar kinase 94.17
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 94.03
1z6t_A 591 APAF-1, apoptotic protease activating factor 1; ca 93.94
2a5y_B549 CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis 93.91
4gp7_A171 Metallophosphoesterase; polynucleotide kinase phos 93.71
3c8u_A208 Fructokinase; YP_612366.1, putative fructose trans 93.63
1tf7_A525 KAIC; homohexamer, hexamer, circadian clock protei 93.58
1htw_A158 HI0065; nucleotide-binding fold, structural genomi 93.54
2v9p_A305 Replication protein E1; AAA+ molecular motor, DNA 93.53
1vma_A306 Cell division protein FTSY; TM0570, structural gen 93.51
3e70_C328 DPA, signal recognition particle receptor; FTSY, S 93.5
1kgd_A180 CASK, peripheral plasma membrane CASK; maguk, guan 93.47
3tif_A235 Uncharacterized ABC transporter ATP-binding prote; 93.46
1pui_A210 ENGB, probable GTP-binding protein ENGB; structura 93.41
1lvg_A198 Guanylate kinase, GMP kinase; transferase; HET: AD 93.39
2qm8_A337 GTPase/ATPase; G protein, G3E, metallochaperone, c 93.32
2cbz_A237 Multidrug resistance-associated protein 1; ABC pro 93.28
2j41_A207 Guanylate kinase; GMP, GMK, transferase, ATP-bindi 93.27
2pcj_A224 ABC transporter, lipoprotein-releasing system ATP- 93.17
3lnc_A231 Guanylate kinase, GMP kinase; ALS collaborative cr 93.15
3vaa_A199 Shikimate kinase, SK; structural genomics, center 93.15
2ff7_A247 Alpha-hemolysin translocation ATP-binding protein 93.14
3uk6_A368 RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding 93.05
2zu0_C267 Probable ATP-dependent transporter SUFC; iron-sulf 92.99
2eyu_A261 Twitching motility protein PILT; pilus retraction 92.98
2jeo_A245 Uridine-cytidine kinase 1; UCK, transferase, ATP-b 92.96
2d2e_A250 SUFC protein; ABC-ATPase, SUF protein, 310-helix, 92.96
1b0u_A262 Histidine permease; ABC transporter, transport pro 92.95
3gfo_A275 Cobalt import ATP-binding protein CBIO 1; structur 92.91
4g1u_C266 Hemin import ATP-binding protein HMUV; membrane tr 92.89
1g6h_A257 High-affinity branched-chain amino acid transport 92.83
3pvs_A447 Replication-associated recombination protein A; ma 92.77
2pze_A229 Cystic fibrosis transmembrane conductance regulat; 92.77
1sgw_A214 Putative ABC transporter; structural genomics, P p 92.75
1j8m_F297 SRP54, signal recognition 54 kDa protein; signalin 92.72
1ji0_A240 ABC transporter; ATP binding protein, structural g 92.72
2ghi_A260 Transport protein; multidrug resistance protein, M 92.7
2olj_A263 Amino acid ABC transporter; ABC domain, ATPase, hy 92.69
1mv5_A243 LMRA, multidrug resistance ABC transporter ATP-bin 92.69
1vpl_A256 ABC transporter, ATP-binding protein; TM0544, stru 92.68
3b9q_A302 Chloroplast SRP receptor homolog, alpha subunit CP 92.63
2ihy_A279 ABC transporter, ATP-binding protein; ATPase, ABC 92.63
3asz_A211 Uridine kinase; cytidine phosphorylation, transfer 92.62
3uie_A200 Adenylyl-sulfate kinase 1, chloroplastic; rossmann 92.6
2ixe_A271 Antigen peptide transporter 1; ABC ATPase, hydrola 92.6
2i3b_A189 HCR-ntpase, human cancer-related ntpase; AAA, ross 92.58
2qi9_C249 Vitamin B12 import ATP-binding protein BTUD; inner 92.51
1zu4_A320 FTSY; GTPase, signal recognition particle, SRP, re 92.43
2qt1_A207 Nicotinamide riboside kinase 1; non-protein kinase 92.4
3ney_A197 55 kDa erythrocyte membrane protein; structural ge 92.39
2yz2_A266 Putative ABC transporter ATP-binding protein TM_0; 92.37
2nq2_C253 Hypothetical ABC transporter ATP-binding protein H 92.33
3bos_A242 Putative DNA replication factor; P-loop containing 92.31
3fvq_A359 Fe(3+) IONS import ATP-binding protein FBPC; nucle 92.31
1rz3_A201 Hypothetical protein rbstp0775; MCSG, structural g 92.28
3b85_A208 Phosphate starvation-inducible protein; PHOH2, ATP 92.28
1sq5_A308 Pantothenate kinase; P-loop, transferase; HET: PAU 92.2
1ls1_A295 Signal recognition particle protein; FFH, SRP54, S 92.2
1y63_A184 LMAJ004144AAA protein; structural genomics, protei 92.07
3rlf_A381 Maltose/maltodextrin import ATP-binding protein M; 92.0
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 91.98
1rj9_A304 FTSY, signal recognition protein; SRP-GTPase domai 91.96
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 91.93
1z47_A355 CYSA, putative ABC-transporter ATP-binding protein 91.93
2yyz_A359 Sugar ABC transporter, ATP-binding protein; sugar 91.92
2it1_A362 362AA long hypothetical maltose/maltodextrin trans 91.87
1v43_A372 Sugar-binding transport ATP-binding protein; ATPas 91.78
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 91.77
1g29_1372 MALK, maltose transport protein MALK; ATPase, acti 91.71
3a00_A186 Guanylate kinase, GMP kinase; domain movement, dim 91.7
2kjq_A149 DNAA-related protein; solution structure, NESG, st 91.67
1s96_A219 Guanylate kinase, GMP kinase; E.coli, dimer, SAD, 91.66
2z0h_A197 DTMP kinase, thymidylate kinase; ATP-binding, nucl 91.55
3tau_A208 Guanylate kinase, GMP kinase; structural genomics, 91.51
2og2_A359 Putative signal recognition particle receptor; nuc 91.51
1knq_A175 Gluconate kinase; ALFA/beta structure, transferase 91.47
3gd7_A390 Fusion complex of cystic fibrosis transmembrane co 91.46
2bbs_A290 Cystic fibrosis transmembrane conductance regulato 91.46
3sfz_A 1249 APAF-1, apoptotic peptidase activating factor 1; a 91.45
2chg_A226 Replication factor C small subunit; DNA-binding pr 91.43
1kag_A173 SKI, shikimate kinase I; transferase, structural g 91.42
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 91.4
3tui_C366 Methionine import ATP-binding protein METN; ABC-tr 91.4
1t9h_A307 YLOQ, probable GTPase ENGC; N-terminal beta-barrel 91.36
1nn5_A215 Similar to deoxythymidylate kinase (thymidylate K; 91.34
3nh6_A306 ATP-binding cassette SUB-family B member 6, mitoc; 91.3
2qor_A204 Guanylate kinase; phosphotransferase, purine metab 91.18
3d31_A348 Sulfate/molybdate ABC transporter, ATP-binding pro 91.18
3aez_A312 Pantothenate kinase; transferase, homodimer, COA b 91.15
1ye8_A178 Protein THEP1, hypothetical UPF0334 kinase-like pr 91.12
2x8a_A274 Nuclear valosin-containing protein-like; nuclear p 91.07
2pjz_A263 Hypothetical protein ST1066; ATP binding protein, 91.06
1ixz_A254 ATP-dependent metalloprotease FTSH; AAA domain fol 91.03
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 90.94
2yv5_A302 YJEQ protein; hydrolase, GTPase, permutation, stru 90.79
1jr3_A373 DNA polymerase III subunit gamma; processivity, pr 90.7
1oxx_K353 GLCV, glucose, ABC transporter, ATP binding protei 90.61
2bdt_A189 BH3686; alpha-beta protein, structural genomics, P 90.6
3cm0_A186 Adenylate kinase; ATP-binding, cytoplasm, nucleoti 90.6
2gj8_A172 MNME, tRNA modification GTPase TRME; G-domain dime 90.51
1cke_A227 CK, MSSA, protein (cytidine monophosphate kinase); 90.36
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 90.32
1lw7_A365 Transcriptional regulator NADR; NMN, NMN adenylyl 90.31
2bbw_A246 Adenylate kinase 4, AK4; nucleotide kinase, nucleo 90.25
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 90.19
2wwf_A212 Thymidilate kinase, putative; transferase, malaria 90.18
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 90.16
2ewv_A372 Twitching motility protein PILT; pilus retraction 90.11
1iy2_A278 ATP-dependent metalloprotease FTSH; AAA domain fol 90.06
2pbr_A195 DTMP kinase, thymidylate kinase; transferase, nucl 90.04
2ffh_A425 Protein (FFH); SRP54, signal recognition particle, 90.01
2npi_A460 Protein CLP1; CLP1-PCF11 complex, ATP binding, ter 89.88
3jvv_A356 Twitching mobility protein; hexameric P-loop ATPas 89.86
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 89.83
2onk_A240 Molybdate/tungstate ABC transporter, ATP-binding p 89.79
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 89.72
3upu_A459 ATP-dependent DNA helicase DDA; RECA-like domain, 89.57
1sxj_B323 Activator 1 37 kDa subunit; clamp loader, processi 89.48
3iij_A180 Coilin-interacting nuclear ATPase protein; alpha a 89.46
4e22_A252 Cytidylate kinase; P-loop, CMP/ATP binding, transf 89.4
2yvu_A186 Probable adenylyl-sulfate kinase; transferase, str 89.38
1kht_A192 Adenylate kinase; phosphotransferase, signaling pr 89.33
2p67_A341 LAO/AO transport system kinase; ARGK, structural G 89.3
2www_A349 Methylmalonic aciduria type A protein, mitochondri 89.29
1u0l_A301 Probable GTPase ENGC; permutation, OB-fold, zinc-f 89.29
2px0_A296 Flagellar biosynthesis protein FLHF; SRP GTPase, f 89.28
2f9l_A199 RAB11B, member RAS oncogene family; RAB11B GTPase, 89.11
4eaq_A229 DTMP kinase, thymidylate kinase; structural genomi 89.05
2qp9_X355 Vacuolar protein sorting-associated protein 4; ATP 88.87
1yqt_A 538 RNAse L inhibitor; ATP-binding cassette, ribosome 88.84
3j16_B 608 RLI1P; ribosome recycling, translation, eukarya, r 88.8
3kb2_A173 SPBC2 prophage-derived uncharacterized protein YOR 88.77
1r8s_A164 ADP-ribosylation factor 1; protein transport/excha 88.69
1oix_A191 RAS-related protein RAB-11A; small G protein, intr 88.69
2rcn_A358 Probable GTPase ENGC; YJEQ, circularly permuted, G 88.63
1kao_A167 RAP2A; GTP-binding protein, small G protein, GDP, 88.5
2wji_A165 Ferrous iron transport protein B homolog; membrane 88.45
2dyk_A161 GTP-binding protein; GTPase, ribosome-binding prot 88.39
4b4t_J405 26S protease regulatory subunit 8 homolog; hydrola 88.35
2r8r_A228 Sensor protein; KDPD, PFAM02702, MCSG, structural 88.29
2gza_A361 Type IV secretion system protein VIRB11; ATPase, h 88.28
3b5x_A582 Lipid A export ATP-binding/permease protein MSBA; 88.19
2pez_A179 Bifunctional 3'-phosphoadenosine 5'- phosphosulfat 88.08
2nzj_A175 GTP-binding protein REM 1; GDP/GTP binding, GTP hy 88.04
2plr_A213 DTMP kinase, probable thymidylate kinase; TMP-bind 88.01
1z2a_A168 RAS-related protein RAB-23; RAB GTPase, vesicular 87.99
2zej_A184 Dardarin, leucine-rich repeat kinase 2; parkinson' 87.97
3fb4_A216 Adenylate kinase; psychrophIle, phosphotransferase 87.9
1u8z_A168 RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH 87.82
3trf_A185 Shikimate kinase, SK; amino acid biosynthesis, tra 87.76
1ek0_A170 Protein (GTP-binding protein YPT51); vesicular tra 87.68
3dl0_A216 Adenylate kinase; phosphotransferase, zinc coordin 87.63
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 87.63
1z08_A170 RAS-related protein RAB-21; RAB GTPase, vesicular 87.62
1c1y_A167 RAS-related protein RAP-1A; GTP-binding proteins, 87.52
3lw7_A179 Adenylate kinase related protein (ADKA-like); AMP, 87.49
2ce2_X166 GTPase HRAS; signaling protein, guanine nucleotide 87.42
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 87.37
1p9r_A418 General secretion pathway protein E; bacterial typ 87.35
1qhx_A178 CPT, protein (chloramphenicol phosphotransferase); 87.31
1yqt_A538 RNAse L inhibitor; ATP-binding cassette, ribosome 87.18
1zuh_A168 Shikimate kinase; alpha-beta protein, transferase; 87.15
1r2q_A170 RAS-related protein RAB-5A; GTPase, GNP, atomic re 87.14
2wjg_A188 FEOB, ferrous iron transport protein B homolog; me 87.14
2vp4_A230 Deoxynucleoside kinase; ATP-binding, DNA synthesis 87.11
3b60_A582 Lipid A export ATP-binding/permease protein MSBA; 87.11
1tev_A196 UMP-CMP kinase; ploop, NMP binding region, LID reg 87.08
3q85_A169 GTP-binding protein REM 2; G-domain, CAV2 beta, si 87.05
2yl4_A595 ATP-binding cassette SUB-family B member 10, mitoc 87.04
1wms_A177 RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p 87.01
2c95_A196 Adenylate kinase 1; transferase, AP4A, nucleotide 86.98
3nwj_A250 ATSK2; P loop, shikimate, nucleoside monophosphate 86.95
2if2_A204 Dephospho-COA kinase; alpha-beta protein, structur 86.94
1g16_A170 RAS-related protein SEC4; G protein RAB, signaling 86.9
1ky3_A182 GTP-binding protein YPT7P; vesicular traffic, GTP 86.89
1lv7_A257 FTSH; alpha/beta domain, four helix bundle, hydrol 86.88
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 86.87
2v54_A204 DTMP kinase, thymidylate kinase; nucleotide biosyn 86.85
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 86.85
3bk7_A 607 ABC transporter ATP-binding protein; ABC ATPase, i 86.83
3ihw_A184 Centg3; RAS, centaurin, GTPase, structural genomic 86.77
1z0j_A170 RAB-22, RAS-related protein RAB-22A; RAB GTPase, R 86.76
3cf0_A301 Transitional endoplasmic reticulum ATPase; AAA, P9 86.73
1zd8_A227 GTP:AMP phosphotransferase mitochondrial; ATP:AMP 86.71
2erx_A172 GTP-binding protein DI-RAS2; GTP hydrolysis, trans 86.65
3bc1_A195 RAS-related protein RAB-27A; RAB27, GTPase, RAB, s 86.64
4a82_A578 Cystic fibrosis transmembrane conductance regulat; 86.63
1svm_A377 Large T antigen; AAA+ fold, viral protein; HET: AT 86.55
1mh1_A186 RAC1; GTP-binding, GTPase, small G-protein, RHO fa 86.48
3qf4_B598 Uncharacterized ABC transporter ATP-binding prote 86.48
2jaq_A205 Deoxyguanosine kinase; transferase, deoxyribonucle 86.47
1m2o_B190 GTP-binding protein SAR1, GTP binding protein; zin 86.46
2rhm_A193 Putative kinase; P-loop containing nucleoside trip 86.46
2gno_A305 DNA polymerase III, gamma subunit-related protein; 86.43
1xjc_A169 MOBB protein homolog; structural genomics, midwest 86.42
1odf_A290 YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser 86.41
2xxa_A433 Signal recognition particle protein; protein trans 86.41
1upt_A171 ARL1, ADP-ribosylation factor-like protein 1; hydr 86.39
3q72_A166 GTP-binding protein RAD; G-domain, CAV2 beta, sign 86.37
2fn4_A181 P23, RAS-related protein R-RAS; GDP/GTP binding, G 86.32
4dsu_A189 GTPase KRAS, isoform 2B; small G-protein, signalin 86.32
1qvr_A 854 CLPB protein; coiled coil, AAA ATPase, chaperone; 86.3
1aky_A220 Adenylate kinase; ATP:AMP phosphotransferase, myok 86.26
2hxs_A178 RAB-26, RAS-related protein RAB-28; GTPase, signal 86.26
3clv_A208 RAB5 protein, putative; malaria, GTPase, structura 86.13
2ged_A193 SR-beta, signal recognition particle receptor beta 86.12
3lv8_A236 DTMP kinase, thymidylate kinase; structural genomi 86.09
3dz8_A191 RAS-related protein RAB-3B; GDP, GTPase, structura 86.06
3c5c_A187 RAS-like protein 12; GDP, GTPase, structural genom 86.06
2pt7_A330 CAG-ALFA; ATPase, protein-protein complex, type IV 86.05
1jjv_A206 Dephospho-COA kinase; P-loop nucleotide-binding fo 86.03
3qf4_A587 ABC transporter, ATP-binding protein; multidrug tr 86.01
3t61_A202 Gluconokinase; PSI-biology, structural genomics, p 86.01
2iyv_A184 Shikimate kinase, SK; transferase, aromatic amino 85.99
1z0f_A179 RAB14, member RAS oncogene family; RAB GTPase, ves 85.98
2j37_W504 Signal recognition particle 54 kDa protein (SRP54) 85.94
2iwr_A178 Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi 85.91
4b4t_M434 26S protease regulatory subunit 6A; hydrolase, AAA 85.89
4edh_A213 DTMP kinase, thymidylate kinase; structural genomi 85.85
4b4t_L437 26S protease subunit RPT4; hydrolase, AAA-atpases, 85.83
3kkq_A183 RAS-related protein M-RAS; GTP-binding, GTPase, si 85.83
1ukz_A203 Uridylate kinase; transferase; HET: ADP AMP; 1.90A 85.81
1ly1_A181 Polynucleotide kinase; PNK, phosphatase, transfera 85.79
2r62_A268 Cell division protease FTSH homolog; ATPase domain 85.79
2y8e_A179 RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti 85.77
2a9k_A187 RAS-related protein RAL-A; bacterial ADP-ribosyltr 85.74
2bwj_A199 Adenylate kinase 5; phosphoryl transfer reaction, 85.71
3bwd_D182 RAC-like GTP-binding protein ARAC6; G domain, cyto 85.71
2cdn_A201 Adenylate kinase; phosphoryl transfer, associative 85.71
3b9p_A297 CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc 85.69
1m7b_A184 RND3/RHOE small GTP-binding protein; small GTPase, 85.69
3ozx_A538 RNAse L inhibitor; ATP binding cassette protein, h 85.68
3con_A190 GTPase NRAS; structural genomics consortium, SGC, 85.68
2qgz_A308 Helicase loader, putative primosome component; str 85.65
2oil_A193 CATX-8, RAS-related protein RAB-25; G-protein, GDP 85.61
4b4t_K428 26S protease regulatory subunit 6B homolog; hydrol 85.61
2cxx_A190 Probable GTP-binding protein ENGB; structural geno 85.59
3bk7_A607 ABC transporter ATP-binding protein; ABC ATPase, i 85.57
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 85.53
2g6b_A180 RAS-related protein RAB-26; G-protein, GTP analogu 85.5
2bme_A186 RAB4A, RAS-related protein RAB4A; GTP-binding prot 85.43
1nks_A194 Adenylate kinase; thermophilic, transferase; HET: 85.43
2efe_B181 Small GTP-binding protein-like; GEF, GTPase, VPS9, 85.43
3ux8_A 670 Excinuclease ABC, A subunit; UVRA, nucleotide exci 85.42
3t15_A293 Ribulose bisphosphate carboxylase/oxygenase activ 85.36
2vli_A183 Antibiotic resistance protein; transferase, tunica 85.32
2qag_B427 Septin-6, protein NEDD5; cell cycle, cell division 85.32
2cjw_A192 GTP-binding protein GEM; nucleotide-binding, small 85.26
3t5g_A181 GTP-binding protein RHEB; immunoglobulin-like beta 85.22
1via_A175 Shikimate kinase; structural genomics, transferase 85.22
1np6_A174 Molybdopterin-guanine dinucleotide biosynthesis pr 85.18
3be4_A217 Adenylate kinase; malaria, cryptosporidium parvum 85.07
2bov_A206 RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, 85.07
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 84.88
2hf9_A226 Probable hydrogenase nickel incorporation protein 84.83
1hqc_A324 RUVB; extended AAA-ATPase domain, complex with nuc 84.81
3pqc_A195 Probable GTP-binding protein ENGB; rossmann fold, 84.73
3tw8_B181 RAS-related protein RAB-35; longin domain, RAB GTP 84.72
4b3f_X 646 DNA-binding protein smubp-2; hydrolase, helicase; 84.71
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 84.71
3sop_A270 Neuronal-specific septin-3; hydrolase; HET: GDP; 2 84.68
4dkx_A216 RAS-related protein RAB-6A; GTP binding fold, memb 84.63
3tkl_A196 RAS-related protein RAB-1A; vesicle trafficking, p 84.62
3t1o_A198 Gliding protein MGLA; G domain containing protein, 84.6
1ni3_A392 YCHF GTPase, YCHF GTP-binding protein; structural 84.6
2qz4_A262 Paraplegin; AAA+, SPG7, protease, ADP, structural 84.53
2gf9_A189 RAS-related protein RAB-3D; G-protein, structural 84.52
1ex7_A186 Guanylate kinase; substrate-induced FIT, domain mo 84.49
1in4_A334 RUVB, holliday junction DNA helicase RUVB; AAA+-cl 84.48
2p5t_B253 PEZT; postsegregational killing system, phosphoryl 84.48
1m7g_A211 Adenylylsulfate kinase; APS kinase, transferase, s 84.47
1vg8_A207 RAS-related protein RAB-7; GTP-binding protein, pr 84.44
2lkc_A178 Translation initiation factor IF-2; NMR {Geobacill 84.36
1q3t_A236 Cytidylate kinase; nucleotide monophosphate kinase 84.34
3tlx_A243 Adenylate kinase 2; structural genomics, structura 84.32
3reg_A194 RHO-like small GTPase; cytoskeleton, nucleotide-bi 84.3
2a5j_A191 RAS-related protein RAB-2B; GTPase, signal transdu 84.3
2fh5_B214 SR-beta, signal recognition particle receptor beta 84.28
1z06_A189 RAS-related protein RAB-33B; RAB GTPase, RAB33B GT 84.25
1zd9_A188 ADP-ribosylation factor-like 10B; transport protei 84.21
1svi_A195 GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro 84.18
1nrj_B218 SR-beta, signal recognition particle receptor beta 84.05
2oap_1511 GSPE-2, type II secretion system protein; hexameri 84.05
1ofh_A310 ATP-dependent HSL protease ATP-binding subunit HSL 83.97
1x3s_A195 RAS-related protein RAB-18; GTPase, GNP, structura 83.97
1ega_A301 Protein (GTP-binding protein ERA); GTPase, RNA-bin 83.96
2atv_A196 RERG, RAS-like estrogen-regulated growth inhibitor 83.96
2fg5_A192 RAB-22B, RAS-related protein RAB-31; G-protein, GT 83.88
2p5s_A199 RAS and EF-hand domain containing; G-protein, RAB, 83.8
4b4t_I437 26S protease regulatory subunit 4 homolog; hydrola 83.66
1zak_A222 Adenylate kinase; ATP:AMP-phosphotransferase, tran 83.58
2pt5_A168 Shikimate kinase, SK; aromatic amino acid biosynth 83.56
3ux8_A670 Excinuclease ABC, A subunit; UVRA, nucleotide exci 83.55
2fu5_C183 RAS-related protein RAB-8A; MSS4:RAB8 protein comp 83.55
3kta_A182 Chromosome segregation protein SMC; structural mai 83.51
1zbd_A203 Rabphilin-3A; G protein, effector, RABCDR, synapti 83.5
1e6c_A173 Shikimate kinase; phosphoryl transfer, ADP, shikim 83.32
4fcw_A311 Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 83.29
1fzq_A181 ADP-ribosylation factor-like protein 3; protein-GD 83.29
2h17_A181 ADP-ribosylation factor-like protein 5A; GDP, GTPa 83.28
2gf0_A199 GTP-binding protein DI-RAS1; GDP/GTP binding, GTP 83.27
4f4c_A1321 Multidrug resistance protein PGP-1; ABC transporte 83.23
2grj_A192 Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp 83.19
3oes_A201 GTPase rhebl1; small GTPase, structural genomics, 83.18
2qen_A350 Walker-type ATPase; unknown function; HET: ADP; 2. 83.18
1ak2_A233 Adenylate kinase isoenzyme-2; nucleoside monophosp 83.07
1gvn_B287 Zeta; postsegregational killing system, plasmid; 1 83.07
3v9p_A227 DTMP kinase, thymidylate kinase; ssgcid, STRU geno 83.06
2q3h_A201 RAS homolog gene family, member U; GTPase, structu 83.05
1e4v_A214 Adenylate kinase; transferase(phosphotransferase); 83.04
4gzl_A204 RAS-related C3 botulinum toxin substrate 1; rossma 83.02
2atx_A194 Small GTP binding protein TC10; GTPase, P-loop, al 83.01
1xwi_A322 SKD1 protein; VPS4B, AAA ATPase, protein transport 82.9
2o52_A200 RAS-related protein RAB-4B; G-protein, GDP, struct 82.86
3p32_A355 Probable GTPase RV1496/MT1543; structural genomics 82.81
1zj6_A187 ADP-ribosylation factor-like protein 5; ARL, GTP-b 82.79
4bas_A199 ADP-ribosylation factor, putative (small GTPase, p 82.75
1gwn_A205 RHO-related GTP-binding protein RHOE; GTPase, inac 82.75
2ew1_A201 RAS-related protein RAB-30; G-protein, GTP analogu 82.7
3cbq_A195 GTP-binding protein REM 2; FLJ38964A, structural g 82.68
2bcg_Y206 Protein YP2, GTP-binding protein YPT1; RABGTPase, 82.57
3r20_A233 Cytidylate kinase; structural genomics, seattle st 82.56
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 82.56
1ksh_A186 ARF-like protein 2; small GTPase, small GTP-bindin 82.5
1moz_A183 ARL1, ADP-ribosylation factor-like protein 1; GTP- 82.43
4ag6_A392 VIRB4 ATPase, type IV secretory pathway VIRB4 comp 82.3
1f6b_A198 SAR1; gtpases, N-terminal helix, Mg-containing com 82.25
3cph_A213 RAS-related protein SEC4; RAB GTPase, prenylation, 82.2
2qmh_A205 HPR kinase/phosphorylase; V267F mutation, ATP-bind 82.2
1uf9_A203 TT1252 protein; P-loop, nucleotide binding domain, 82.14
3q3j_B214 RHO-related GTP-binding protein RHO6; RAS-binding 82.12
2f7s_A217 C25KG, RAS-related protein RAB-27B; G-protein, str 82.08
3e1s_A574 Exodeoxyribonuclease V, subunit RECD; alpha and be 82.06
4b4t_H467 26S protease regulatory subunit 7 homolog; hydrola 82.0
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 81.95
1qf9_A194 UMP/CMP kinase, protein (uridylmonophosphate/cytid 81.87
2j0v_A212 RAC-like GTP-binding protein ARAC7; nucleotide-bin 81.83
3m6a_A 543 ATP-dependent protease LA 1; alpha, beta, ATP-bind 81.81
2f1r_A171 Molybdopterin-guanine dinucleotide biosynthesis pr 81.8
2ze6_A253 Isopentenyl transferase; crown GALL tumor, cytokin 81.71
2fv8_A207 H6, RHO-related GTP-binding protein RHOB; GDP/GTP 81.69
2g3y_A211 GTP-binding protein GEM; small GTPase, GDP, inacti 81.69
3ozx_A 538 RNAse L inhibitor; ATP binding cassette protein, h 81.67
2wsm_A221 Hydrogenase expression/formation protein (HYPB); m 81.66
2hup_A201 RAS-related protein RAB-43; G-protein, GDP, struct 81.6
1tue_A212 Replication protein E1; helicase, replication, E1E 81.56
3sr0_A206 Adenylate kinase; phosphoryl transfer analogue, AL 81.46
3lxx_A239 GTPase IMAP family member 4; structural genomics c 81.45
1tq4_A413 IIGP1, interferon-inducible GTPase; interferon gam 81.39
2il1_A192 RAB12; G-protein, GDP, GTPase, predicted, structur 81.21
2gco_A201 H9, RHO-related GTP-binding protein RHOC; GTPase,s 81.13
2fna_A357 Conserved hypothetical protein; structural genomic 81.07
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 81.05
2dhr_A 499 FTSH; AAA+ protein, hexameric Zn metalloprotease, 81.02
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 80.91
2j1l_A214 RHO-related GTP-binding protein RHOD; GTPase, memb 80.89
2b6h_A192 ADP-ribosylation factor 5; membrane trafficking, G 80.71
2h57_A190 ADP-ribosylation factor-like protein 6; GTP, GTPas 80.63
2bjv_A265 PSP operon transcriptional activator; AAA, transcr 80.56
2r44_A331 Uncharacterized protein; putative ATPase, structur 80.48
1sxj_D353 Activator 1 41 kDa subunit; clamp loader, processi 80.2
2iw3_A986 Elongation factor 3A; acetylation, ATP-binding, pr 80.11
3tqc_A321 Pantothenate kinase; biosynthesis of cofactors, pr 80.1
3ake_A208 Cytidylate kinase; CMP kinase, CMP complex, open c 80.1
2qnr_A301 Septin-2, protein NEDD5; structural genomics conso 80.05
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B* Back     alignment and structure
Probab=100.00  E-value=3.1e-131  Score=1067.37  Aligned_cols=469  Identities=68%  Similarity=1.050  Sum_probs=442.0

Q ss_pred             ceeeEEEEECCeEEEEeCC-CCchhhhceEEecc---Cc--eeEEeeeeecCCceEEEEEeccccCcccCceEEecCCCc
Q 008638           86 AIGQVCQVIGAVVDVRFDE-GLPPILTALEVVDH---SV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPI  159 (558)
Q Consensus        86 ~~G~V~~V~G~VVdv~F~~-gLp~i~~~Lev~~~---~~--~lv~EV~~~lg~~~Vr~i~l~~t~GL~~G~~V~~tg~~~  159 (558)
                      ++|+|++|+|+||+++|++ .+|.+++.+++...   +.  .+++||++|++++.|++++|++++||++|+.|.+||+++
T Consensus        19 ~~G~v~~V~G~vv~v~~~~~~~~~i~~~~~i~~~~~~g~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~   98 (498)
T 1fx0_B           19 NLGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPL   98 (498)
T ss_dssp             CCEEEEEEETTEEEEECCSSCCCCTTCEEEECCCSSSSCCCCCEEEEEECCSSSCEEEEESSCCTTCCTTCEEEECSSSC
T ss_pred             CCceEEEEEccEEEEEeCCCCccccccEEEEEeCCCCCcccceEEEEEEEecCCeEEEEEecCccCCCCCCEEEecCCcc
Confidence            4799999999999999975 47899888888531   22  589999999999999999999999999999999999999


Q ss_pred             eeccCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCCh
Q 008638          160 TVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK  239 (558)
Q Consensus       160 ~VpVG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~GK  239 (558)
                      +||||+++||||+|++|+|||+++++...++|||++++|++++|.++++||+||||+||+|+|||||||+|||||+|+||
T Consensus        99 ~vpvG~~lLGRV~d~lG~PiD~~~~i~~~~~~pi~~~~p~~~~r~~~~e~l~TGirvID~l~pigkGqr~gIfgg~GvGK  178 (498)
T 1fx0_B           99 SVPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGK  178 (498)
T ss_dssp             EEEESSTTTTCEECTTSCBCSSSSCCCCSEEEESCCCCCCGGGCCCCCCCCCCSCTTHHHHSCCCTTCCEEEEECSSSSH
T ss_pred             eEecCccceeeEEcccccCCCCcCCcCCCceeccccCCCchhhhcccccccccceeEeeeecccccCCeEEeecCCCCCc
Confidence            99999999999999999999999998888899999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHHH
Q 008638          240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA  319 (558)
Q Consensus       240 T~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~tiA  319 (558)
                      |+|++++|+|++++|+++|||++||||+||++||+++|.+.++++.. ....+||++|++|||+||++|++++|+|+|+|
T Consensus       179 T~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~-~l~~~rtvvV~~t~d~p~~~R~~~~~~altiA  257 (498)
T 1fx0_B          179 TVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQ-NIAESKVALVYGQMNEPPGARMRVGLTALTMA  257 (498)
T ss_dssp             HHHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSS-TTCCCCEEEEEECTTSCHHHHTTHHHHHHHTH
T ss_pred             hHHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccc-cccccceEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999888889999999999999999999999999876421 11124899999999999999999999999999


Q ss_pred             HHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCCCc
Q 008638          320 EHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDP  399 (558)
Q Consensus       320 EyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~dp  399 (558)
                      |||||++|+|||||+||+||||+|+||||+++||||+++||||++|++|++|||||+++++||||+|++|++|+||++||
T Consensus       258 Eyfrd~~G~dVLl~~DsitR~A~A~rEvs~~lge~Ps~~GYpp~l~~~l~~L~ERag~~~~GSIT~i~tV~v~~dD~tdP  337 (498)
T 1fx0_B          258 EYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDP  337 (498)
T ss_dssp             HHHTTTSCCEEEEEEECSHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHTSSSSSCCTTCEECCEEEEECGGGCSSSH
T ss_pred             HHHHHhcCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHHhccCCCCCceeeeEEEEccCCCcCCc
Confidence            99999789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccccCCCccChHHHHHHHHHHHHHHccHHHHHHHHHhcCCCCChhH
Q 008638          400 APATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDD  479 (558)
Q Consensus       400 ip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~~~~~~~~~~h~~~a~~~r~~La~y~el~~ii~i~G~~~l~~~~  479 (558)
                      ||+++|+||||||+|||+||++||||||||+.|+||+|++++++++|+++++++|++|++|+|++++|+++|+++|+++|
T Consensus       338 i~d~~~~ilDG~ivLsR~La~~giyPAID~l~S~SR~~~~~i~~~~h~~~a~~lr~~la~y~el~~li~i~G~d~ls~~d  417 (498)
T 1fx0_B          338 APATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYEIAQRVKETLQRYKELQDIIAILGLDELSEED  417 (498)
T ss_dssp             HHHHHHTTCSEEEEBCSTTTTTTCSSCBCSSSCCBTTCSTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCTTT
T ss_pred             chHHHHHhhCceEEehhhHHhCCCCceeccccccccCCCcccCCHHHHHHHHHHHHHHHhhHHHHHHHHHhCCCcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCCccchhcCCCCceecHHHHHHHHHHHHccccCCCCccccccccCHHHHHHHHHHHHHH
Q 008638          480 KLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIAKE  555 (558)
Q Consensus       480 ~~~v~~~~~i~~fL~Q~~~~ae~ft~~~g~~v~l~dti~~~~~il~G~~d~~p~~~f~~~g~~~~~~~k~~~~~~~  555 (558)
                      +++++++++|++||+|+++++|.||+.+|++++++||++.|++|++|+||++||++|||||+|+|+.+|+++++++
T Consensus       418 ~~~l~~~~~i~~fL~Q~~~v~e~ft~~~g~~v~~~~t~~~l~~il~g~~d~~pe~~~~~~g~~~~~~~~~~~~~~~  493 (498)
T 1fx0_B          418 RLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDSLPEQAFYLVGNIDEATAKAMNLEME  493 (498)
T ss_dssp             HHHHHHHHHHHHHTCCCCSSCTTTSCSCCCCCCHHHHHHHHHTTTTTTTSSSCGGGTTTCSSSGGGCC--------
T ss_pred             HHHHHHHHHHHHHHcCCchHHHHhhcCCCcccCHHHHHHHHHHHhcCcccCCCHHHhhcCCCHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998644
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ... Back     alignment and structure
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 Back     alignment and structure
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A Back     alignment and structure
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ... Back     alignment and structure
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B Back     alignment and structure
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8} Back     alignment and structure
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A* Back     alignment and structure
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A* Back     alignment and structure
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D* Back     alignment and structure
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D* Back     alignment and structure
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A* Back     alignment and structure
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C Back     alignment and structure
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A Back     alignment and structure
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima} Back     alignment and structure
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A Back     alignment and structure
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} Back     alignment and structure
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* Back     alignment and structure
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} Back     alignment and structure
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} Back     alignment and structure
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Back     alignment and structure
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... Back     alignment and structure
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} Back     alignment and structure
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Back     alignment and structure
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A Back     alignment and structure
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 Back     alignment and structure
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A Back     alignment and structure
>1pyv_A ATP synthase beta chain, mitochondrial precursor; hydrolase; NMR {Nicotiana plumbaginifolia} SCOP: j.36.4.1 Back     alignment and structure
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* Back     alignment and structure
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* Back     alignment and structure
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* Back     alignment and structure
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* Back     alignment and structure
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii} Back     alignment and structure
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Back     alignment and structure
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Back     alignment and structure
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} Back     alignment and structure
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* Back     alignment and structure
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Back     alignment and structure
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} Back     alignment and structure
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Back     alignment and structure
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} Back     alignment and structure
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 Back     alignment and structure
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A Back     alignment and structure
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A Back     alignment and structure
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} Back     alignment and structure
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* Back     alignment and structure
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} Back     alignment and structure
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Back     alignment and structure
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Back     alignment and structure
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* Back     alignment and structure
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Back     alignment and structure
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Back     alignment and structure
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A Back     alignment and structure
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* Back     alignment and structure
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Back     alignment and structure
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* Back     alignment and structure
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Back     alignment and structure
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 Back     alignment and structure
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 Back     alignment and structure
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* Back     alignment and structure
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Back     alignment and structure
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} Back     alignment and structure
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Back     alignment and structure
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} Back     alignment and structure
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Back     alignment and structure
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Back     alignment and structure
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Back     alignment and structure
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} Back     alignment and structure
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Back     alignment and structure
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Back     alignment and structure
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Back     alignment and structure
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Back     alignment and structure
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} Back     alignment and structure
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Back     alignment and structure
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Back     alignment and structure
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F Back     alignment and structure
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Back     alignment and structure
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Back     alignment and structure
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Back     alignment and structure
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Back     alignment and structure
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Back     alignment and structure
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} Back     alignment and structure
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Back     alignment and structure
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Back     alignment and structure
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* Back     alignment and structure
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Back     alignment and structure
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 Back     alignment and structure
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Back     alignment and structure
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A Back     alignment and structure
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Back     alignment and structure
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Back     alignment and structure
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Back     alignment and structure
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Back     alignment and structure
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* Back     alignment and structure
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* Back     alignment and structure
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Back     alignment and structure
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Back     alignment and structure
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Back     alignment and structure
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Back     alignment and structure
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Back     alignment and structure
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* Back     alignment and structure
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} Back     alignment and structure
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Back     alignment and structure
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Back     alignment and structure
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Back     alignment and structure
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 Back     alignment and structure
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* Back     alignment and structure
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Back     alignment and structure
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} Back     alignment and structure
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Back     alignment and structure
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* Back     alignment and structure
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Back     alignment and structure
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Back     alignment and structure
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} Back     alignment and structure
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Back     alignment and structure
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Back     alignment and structure
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Back     alignment and structure
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Back     alignment and structure
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Back     alignment and structure
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 Back     alignment and structure
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* Back     alignment and structure
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Back     alignment and structure
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} Back     alignment and structure
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A Back     alignment and structure
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} Back     alignment and structure
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Back     alignment and structure
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} Back     alignment and structure
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} Back     alignment and structure
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Back     alignment and structure
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 Back     alignment and structure
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} Back     alignment and structure
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 Back     alignment and structure
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* Back     alignment and structure
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Back     alignment and structure
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A Back     alignment and structure
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Back     alignment and structure
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Back     alignment and structure
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} Back     alignment and structure
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* Back     alignment and structure
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Back     alignment and structure
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Back     alignment and structure
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V Back     alignment and structure
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Back     alignment and structure
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* Back     alignment and structure
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Back     alignment and structure
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} Back     alignment and structure
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} Back     alignment and structure
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Back     alignment and structure
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* Back     alignment and structure
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Back     alignment and structure
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} Back     alignment and structure
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Back     alignment and structure
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Back     alignment and structure
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Back     alignment and structure
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Back     alignment and structure
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} Back     alignment and structure
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Back     alignment and structure
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Back     alignment and structure
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Back     alignment and structure
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Back     alignment and structure
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* Back     alignment and structure
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Back     alignment and structure
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Back     alignment and structure
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* Back     alignment and structure
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Back     alignment and structure
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} Back     alignment and structure
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* Back     alignment and structure
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Back     alignment and structure
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* Back     alignment and structure
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Back     alignment and structure
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Back     alignment and structure
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} Back     alignment and structure
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} Back     alignment and structure
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Back     alignment and structure
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Back     alignment and structure
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Back     alignment and structure
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Back     alignment and structure
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Back     alignment and structure
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Back     alignment and structure
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Back     alignment and structure
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Back     alignment and structure
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A Back     alignment and structure
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Back     alignment and structure
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Back     alignment and structure
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* Back     alignment and structure
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Back     alignment and structure
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 Back     alignment and structure
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 Back     alignment and structure
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 Back     alignment and structure
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Back     alignment and structure
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Back     alignment and structure
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Back     alignment and structure
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Back     alignment and structure
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Back     alignment and structure
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Back     alignment and structure
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Back     alignment and structure
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Back     alignment and structure
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* Back     alignment and structure
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Back     alignment and structure
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A Back     alignment and structure
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 Back     alignment and structure
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Back     alignment and structure
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Back     alignment and structure
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* Back     alignment and structure
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Back     alignment and structure
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A Back     alignment and structure
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Back     alignment and structure
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* Back     alignment and structure
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Back     alignment and structure
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Back     alignment and structure
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Back     alignment and structure
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Back     alignment and structure
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Back     alignment and structure
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Back     alignment and structure
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Back     alignment and structure
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Back     alignment and structure
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Back     alignment and structure
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Back     alignment and structure
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Back     alignment and structure
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Back     alignment and structure
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Back     alignment and structure
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Back     alignment and structure
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Back     alignment and structure
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Back     alignment and structure
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Back     alignment and structure
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} Back     alignment and structure
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Back     alignment and structure
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Back     alignment and structure
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Back     alignment and structure
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Back     alignment and structure
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* Back     alignment and structure
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 Back     alignment and structure
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A Back     alignment and structure
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Back     alignment and structure
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* Back     alignment and structure
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Back     alignment and structure
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A Back     alignment and structure
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Back     alignment and structure
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} Back     alignment and structure
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* Back     alignment and structure
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Back     alignment and structure
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Back     alignment and structure
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 Back     alignment and structure
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Back     alignment and structure
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Back     alignment and structure
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A Back     alignment and structure
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Back     alignment and structure
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Back     alignment and structure
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* Back     alignment and structure
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Back     alignment and structure
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* Back     alignment and structure
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 Back     alignment and structure
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Back     alignment and structure
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* Back     alignment and structure
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Back     alignment and structure
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Back     alignment and structure
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Back     alignment and structure
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Back     alignment and structure
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* Back     alignment and structure
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Back     alignment and structure
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 Back     alignment and structure
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Back     alignment and structure
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Back     alignment and structure
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Back     alignment and structure
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Back     alignment and structure
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} Back     alignment and structure
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} Back     alignment and structure
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Back     alignment and structure
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* Back     alignment and structure
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Back     alignment and structure
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* Back     alignment and structure
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Back     alignment and structure
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Back     alignment and structure
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Back     alignment and structure
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} Back     alignment and structure
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} Back     alignment and structure
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Back     alignment and structure
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Back     alignment and structure
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Back     alignment and structure
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* Back     alignment and structure
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Back     alignment and structure
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Back     alignment and structure
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* Back     alignment and structure
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Back     alignment and structure
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Back     alignment and structure
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* Back     alignment and structure
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} Back     alignment and structure
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Back     alignment and structure
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Back     alignment and structure
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Back     alignment and structure
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Back     alignment and structure
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Back     alignment and structure
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A Back     alignment and structure
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Back     alignment and structure
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Back     alignment and structure
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* Back     alignment and structure
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 Back     alignment and structure
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Back     alignment and structure
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Back     alignment and structure
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Back     alignment and structure
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A Back     alignment and structure
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} Back     alignment and structure
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Back     alignment and structure
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Back     alignment and structure
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Back     alignment and structure
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} Back     alignment and structure
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Back     alignment and structure
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 Back     alignment and structure
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* Back     alignment and structure
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Back     alignment and structure
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Back     alignment and structure
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Back     alignment and structure
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Back     alignment and structure
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Back     alignment and structure
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Back     alignment and structure
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Back     alignment and structure
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Back     alignment and structure
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} Back     alignment and structure
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* Back     alignment and structure
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 558
d2jdid3276 c.37.1.11 (D:82-357) Central domain of beta subuni 1e-127
d2jdia3285 c.37.1.11 (A:95-379) Central domain of alpha subun 1e-113
d1fx0a3276 c.37.1.11 (A:97-372) Central domain of alpha subun 2e-92
d1skye1114 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, 2e-64
d1xpua3289 c.37.1.11 (A:129-417) Transcription termination fa 2e-63
d2jdid1118 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, 7e-63
d1fx0b1108 a.69.1.1 (B:378-485) F1 ATP synthase beta subunit, 5e-59
d2jdid272 b.49.1.1 (D:10-81) F1 ATP synthase beta subunit, d 1e-30
d1fx0b279 b.49.1.1 (B:19-97) F1 ATP synthase beta subunit, d 3e-28
d1skye282 b.49.1.1 (E:1-82) F1 ATP synthase beta subunit, do 5e-27
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 276 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  372 bits (957), Expect = e-127
 Identities = 240/278 (86%), Positives = 254/278 (91%), Gaps = 2/278 (0%)

Query: 159 ITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVD 218
           I +PVG  TLGRIMNVIGEPIDE+G +KT+ +  IH EAP FVE + EQ+ILVTGIKVVD
Sbjct: 1   IRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVD 60

Query: 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMI 278
           LLAPY +GGKIGLFGGAGVGKTVLIMELINNVAKAHGG+SVFAGVGERTREGNDLY EMI
Sbjct: 61  LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI 120

Query: 279 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIF 338
           ESGVI L D  A SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EGQDVLLFIDNIF
Sbjct: 121 ESGVINLKD--ATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 178

Query: 339 RFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTD 398
           RFTQA SEVSALLGRIPSAVGYQPTLATD+G +QERITTTKKGSITSVQAIYVPADDLTD
Sbjct: 179 RFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTD 238

Query: 399 PAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRM 436
           PAPATTFAHLDATTVLSR I+ELGIYPAVDPLDSTSR+
Sbjct: 239 PAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRI 276
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} Length = 285 Back     information, alignment and structure
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Length = 276 Back     information, alignment and structure
>d1skye1 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]} Length = 114 Back     information, alignment and structure
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} Length = 289 Back     information, alignment and structure
>d2jdid1 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, domain 3 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118 Back     information, alignment and structure
>d1fx0b1 a.69.1.1 (B:378-485) F1 ATP synthase beta subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Length = 108 Back     information, alignment and structure
>d2jdid2 b.49.1.1 (D:10-81) F1 ATP synthase beta subunit, domain 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 72 Back     information, alignment and structure
>d1fx0b2 b.49.1.1 (B:19-97) F1 ATP synthase beta subunit, domain 1 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Length = 79 Back     information, alignment and structure
>d1skye2 b.49.1.1 (E:1-82) F1 ATP synthase beta subunit, domain 1 {Bacillus sp., strain ps3 [TaxId: 1409]} Length = 82 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query558
d2jdid3276 Central domain of beta subunit of F1 ATP synthase 100.0
d2jdia3285 Central domain of alpha subunit of F1 ATP synthase 100.0
d1fx0a3276 Central domain of alpha subunit of F1 ATP synthase 100.0
d1xpua3289 Transcription termination factor Rho, ATPase domai 100.0
d2jdid1118 F1 ATP synthase beta subunit, domain 3 {Rat (Rattu 100.0
d1skye1114 F1 ATP synthase beta subunit, domain 3 {Bacillus s 100.0
d1fx0b1108 F1 ATP synthase beta subunit, domain 3 {Spinach (S 100.0
d2jdid272 F1 ATP synthase beta subunit, domain 1 {Rat (Rattu 99.77
d1fx0b279 F1 ATP synthase beta subunit, domain 1 {Spinach (S 99.73
d1skye282 F1 ATP synthase beta subunit, domain 1 {Bacillus s 99.71
d1fx0a1129 F1 ATP synthase alpha subunit, domain 3 {Spinach ( 98.72
d2jdia1131 F1 ATP synthase alpha subunit, domain 3 {Cow (Bos 98.72
d1skyb1131 F1 ATP synthase alpha subunit, domain 3 {Bacillus 98.7
d2jdia271 F1 ATP synthase alpha subunit, domain 1 {Cow (Bos 98.07
d1skyb275 F1 ATP synthase alpha subunit, domain 1 {Bacillus 98.05
d1fx0a272 F1 ATP synthase alpha subunit, domain 1 {Spinach ( 97.88
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 97.45
d1mo6a1269 RecA protein, ATPase-domain {Mycobacterium tubercu 97.4
d1u94a1263 RecA protein, ATPase-domain {Escherichia coli [Tax 97.35
d1tf7a1242 Circadian clock protein KaiC {Synechococcus sp. st 97.29
d1xp8a1268 RecA protein, ATPase-domain {Deinococcus radiodura 97.21
d1n0wa_242 DNA repair protein Rad51, catalytic domain {Human 97.14
d1szpa2251 DNA repair protein Rad51, catalytic domain {Baker' 97.09
d1pzna2254 DNA repair protein Rad51, catalytic domain {Archae 96.87
d2i1qa2258 DNA repair protein Rad51, catalytic domain {Archae 96.8
d1v5wa_258 Meiotic recombination protein DMC1/LIM15 homolog { 96.78
d1cr2a_277 Gene 4 protein (g4p, DNA primase), helicase domain 96.26
d1m7ga_208 Adenosine-5'phosphosulfate kinase (APS kinase) {Fu 96.02
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 95.49
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 95.47
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 95.18
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 94.91
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 94.55
d1np6a_170 Molybdopterin-guanine dinucleotide biosynthesis pr 94.47
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 94.41
d1j8yf2211 GTPase domain of the signal sequence recognition p 94.19
d1okkd2207 GTPase domain of the signal recognition particle r 94.17
d1m8pa3183 ATP sulfurylase C-terminal domain {Fungus (Penicil 94.09
d2a5yb3277 CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI 94.06
d1rkba_173 Adenylate kinase {Human (Homo sapiens), isoenzyme 93.99
d2p67a1327 LAO/AO transport system kinase ArgK {Escherichia c 93.96
d1jj7a_251 Peptide transporter Tap1, C-terminal ABC domain {H 93.89
d2qy9a2211 GTPase domain of the signal recognition particle r 93.86
d2qtvb1166 SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 93.85
d2awna2232 Maltose transport protein MalK, N-terminal domain 93.84
d1qvra2387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 93.83
d1r0wa_281 Cystic fibrosis transmembrane conductance regulato 93.71
d1l2ta_230 MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 93.6
d1g2912240 Maltose transport protein MalK, N-terminal domain 93.53
d1v43a3239 Hypothetical protein PH0022, N-terminal domain {Py 93.53
d1sgwa_200 Putative ABC transporter PF0895 {Pyrococcus furios 93.52
d1xjca_165 Molybdopterin-guanine dinucleotide biosynthesis pr 93.46
d2pmka1241 Haemolysin B ATP-binding protein {Escherichia coli 93.44
d1b0ua_258 ATP-binding subunit of the histidine permease {Sal 93.26
d3b60a1253 Multidrug resistance ABC transporter MsbA, C-termi 93.23
d1mv5a_242 Multidrug resistance ABC transporter LmrA, C-termi 93.23
d1ls1a2207 GTPase domain of the signal sequence recognition p 93.13
d1vmaa2213 GTPase domain of the signal recognition particle r 93.01
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 92.99
d3dhwc1240 Methionine import ATP-binding protein MetN {Escher 92.9
d1g6ha_254 MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 92.77
d1x6va3195 Adenosine-5'phosphosulfate kinase (APS kinase) {Hu 92.74
d1y63a_174 Probable kinase LmjF30.1890 {Leishmania major [Tax 92.7
d3d31a2229 Sulfate/molybdate ABC transporter, ATP-binding pro 92.66
d1r8sa_160 ADP-ribosylation factor {Human (Homo sapiens), ARF 92.66
d2hyda1255 Putative multidrug export ATP-binding/permease pro 92.58
d1oxxk2242 Glucose transport protein GlcV, N-terminal domain 92.52
d2qm8a1323 Metallochaperone MeaB {Methylobacterium extorquens 92.48
d1ji0a_240 Branched chain aminoacid ABC transporter {Thermoto 92.47
d1bifa1213 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata 92.41
d2bdta1176 Hypothetical protein BH3686 {Bacillus halodurans [ 92.37
d1ly1a_152 Polynucleotide kinase, kinase domain {Bacteriophag 92.23
d1ak2a1190 Adenylate kinase {Cow (Bos taurus), mitochondrial 92.16
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 92.01
d1nlfa_274 Hexameric replicative helicase repA {Escherichia c 92.0
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 91.98
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 91.94
d1upta_169 ADP-ribosylation factor {Human (Homo sapiens), ARL 91.86
d1khta_190 Adenylate kinase {Archaeon Methanococcus voltae [T 91.85
d1rz3a_198 Hypothetical protein rbstp0775 {Bacillus stearothe 91.74
d1l7vc_231 ABC transporter involved in vitamin B12 uptake, Bt 91.66
d1zina1182 Adenylate kinase {Bacillus stearothermophilus [Tax 91.62
d1qf9a_194 UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 91.16
d1z0fa1166 Rab14 {Human (Homo sapiens) [TaxId: 9606]} 91.05
d2a5ja1173 Rab2b {Human (Homo sapiens) [TaxId: 9606]} 90.95
d1xtqa1167 GTP-binding protein RheB {Human (Homo sapiens) [Ta 90.92
d1f6ba_186 SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 90.81
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 90.8
d1vpla_238 Putative ABC transporter TM0544 {Thermotoga mariti 90.77
d1kaoa_167 Rap2a {Human (Homo sapiens) [TaxId: 9606]} 90.74
d1z2aa1164 Rab23 {Mouse (Mus musculus) [TaxId: 10090]} 90.65
d2cdna1181 Adenylate kinase {Mycobacterium tuberculosis [TaxI 90.62
d2onka1240 Molybdate/tungstate import ATP-binding protein Wtp 90.58
d1z08a1167 Rab21 {Human (Homo sapiens) [TaxId: 9606]} 90.56
d2erxa1171 di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 90.51
d1z0ja1167 Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} 90.48
d1r2qa_170 Rab5a {Human (Homo sapiens) [TaxId: 9606]} 90.45
d1ky3a_175 Rab-related protein ypt7p {Baker's yeast (Saccharo 90.45
d2atva1168 Ras-like estrogen-regulated growth inhibitor, RERG 90.44
d1yzqa1164 Rab6 {Human (Homo sapiens) [TaxId: 9606]} 90.41
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 90.38
d2fn4a1173 r-Ras {Human (Homo sapiens) [TaxId: 9606]} 90.37
d1ctqa_166 cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 90.34
d1ek0a_170 Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T 90.21
d1z06a1165 Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} 90.19
d2ak3a1189 Adenylate kinase {Cow (Bos taurus), mitochondrial 90.08
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 90.02
d1zaka1189 Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} 89.95
d2erya1171 r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} 89.93
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 89.88
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 89.86
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 89.6
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 89.58
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 89.56
d1s3ga1182 Adenylate kinase {Bacillus globisporus [TaxId: 145 89.51
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 89.48
d1wmsa_174 Rab9a {Human (Homo sapiens) [TaxId: 9606]} 89.44
d2ew1a1171 Rab30 {Human (Homo sapiens) [TaxId: 9606]} 89.43
d3raba_169 Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} 89.38
d1c1ya_167 Rap1A {Human (Homo sapiens) [TaxId: 9606]} 89.38
d1e4va1179 Adenylate kinase {Escherichia coli [TaxId: 562]} 89.27
d1vg8a_184 Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} 89.27
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 89.24
d2atxa1185 RhoQ {Human (Homo sapiens) [TaxId: 9606]} 89.22
d1akya1180 Adenylate kinase {Baker's yeast (Saccharomyces cer 89.22
d1mh1a_183 Rac {Human (Homo sapiens) [TaxId: 9606]} 89.15
d2f9la1175 Rab11b {Human (Homo sapiens) [TaxId: 9606]} 89.14
d2f7sa1186 Rab27b {Human (Homo sapiens) [TaxId: 9606]} 89.08
d1kmqa_177 RhoA {Human (Homo sapiens) [TaxId: 9606]} 89.06
d1yj5a2172 5' polynucleotide kinase-3' phosphatase, C-termina 88.97
d1zd9a1164 ADP-ribosylation factor {Human (Homo sapiens), ARL 88.88
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 88.85
d1knqa_171 Gluconate kinase {Escherichia coli [TaxId: 562]} 88.7
d1ksha_165 ADP-ribosylation factor {Mouse (Mus musculus), ARL 88.66
d1u8za_168 Ras-related protein RalA {Cotton-top tamarin (Sagu 88.65
d2bmea1174 Rab4a {Human (Homo sapiens) [TaxId: 9606]} 88.59
d2g6ba1170 Rab26 {Human (Homo sapiens) [TaxId: 9606]} 88.54
d1teva_194 UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] 88.36
d1ckea_225 CMP kinase {Escherichia coli [TaxId: 562]} 88.35
d3adka_194 Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} 88.26
d1qhxa_178 Chloramphenicol phosphotransferase {Streptomyces v 88.18
d1ukza_196 Uridylate kinase {Baker's yeast (Saccharomyces cer 88.0
d1yrba1244 ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss 87.97
d1zj6a1177 ADP-ribosylation factor {Human (Homo sapiens), ARL 87.91
d1x3sa1177 Rab18 {Human (Homo sapiens) [TaxId: 9606]} 87.72
d1m7ba_179 RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} 87.66
d1svsa1195 Transducin (alpha subunit) {Rat (Rattus norvegicus 87.55
d1znwa1182 Guanylate kinase {Mycobacterium tuberculosis [TaxI 87.48
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 87.45
d2gjsa1168 Rad {Human (Homo sapiens) [TaxId: 9606]} 87.38
d1x1ra1169 Ras-related protein M-Ras (XRas) {Mouse (Mus muscu 87.35
d1g16a_166 Rab-related protein Sec4 {Baker's yeast (Saccharom 87.32
d2bmja1175 Centaurin gamma 1, G domain {Human (Homo sapiens) 87.24
d2fu5c1173 Rab8a {Mouse (Mus musculus) [TaxId: 10090]} 87.19
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 87.15
d1e6ca_170 Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax 87.04
d2iyva1165 Shikimate kinase (AroK) {Mycobacterium tuberculosi 87.03
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 86.95
d2bcgy1194 GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi 86.83
d2ngra_191 CDC42 {Human (Homo sapiens) [TaxId: 9606]} 86.82
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 86.8
d1nksa_194 Adenylate kinase {Archaeon Sulfolobus acidocaldari 86.76
d1fzqa_176 ADP-ribosylation factor {Mouse (Mus musculus), ARL 86.73
d2bcjq2200 Transducin (alpha subunit) {Mouse (Mus musculus) [ 86.57
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 86.54
d1uj2a_213 Uridine-cytidine kinase 2 {Human (Homo sapiens) [T 86.42
d1u0la2225 Probable GTPase EngC (YjeQ), C-terminal domain {Th 86.36
d1zcba2200 Transducin (alpha subunit) {Mouse (Mus musculus) [ 86.26
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 86.14
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 86.14
d1i2ma_170 Ran {Human (Homo sapiens) [TaxId: 9606]} 86.12
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 85.98
d2g3ya1172 GTP-binding protein GEM {Human (Homo sapiens) [Tax 85.91
d2gj8a1161 Probable tRNA modification GTPase TrmE (MnmE), G d 85.8
d1viaa_161 Shikimate kinase (AroK) {Campylobacter jejuni [Tax 85.73
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 85.22
d1mkya2186 Probable GTPase Der, N-terminal and middle domains 84.88
d1gkya_186 Guanylate kinase {Baker's yeast (Saccharomyces cer 84.74
d1mkya1171 Probable GTPase Der, N-terminal and middle domains 84.72
d1puia_188 Probable GTPase EngB {Escherichia coli [TaxId: 562 84.66
d1lvga_190 Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 84.37
d1azta2221 Transducin (alpha subunit) {Cow (Bos taurus) [TaxI 84.36
d1q3ta_223 CMP kinase {Streptococcus pneumoniae [TaxId: 1313] 84.31
d1e9ra_433 Bacterial conjugative coupling protein TrwB {Esche 84.2
d1lnza2185 Obg GTP-binding protein middle domain {Bacillus su 83.85
d2cxxa1184 GTP-binding protein engB {Pyrococcus horikoshii [T 83.84
d1e0sa_173 ADP-ribosylation factor {Human (Homo sapiens), ARF 83.67
d2fh5b1207 Signal recognition particle receptor beta-subunit 83.66
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 83.4
d1nrjb_209 Signal recognition particle receptor beta-subunit 83.09
d1t9ha2231 Probable GTPase EngC (YjeQ), C-terminal domain {Ba 82.92
d1wf3a1178 GTPase Era, N-terminal domain {Thermus thermophilu 82.88
d1egaa1179 GTPase Era, N-terminal domain {Escherichia coli [T 82.87
d1kgda_178 Guanylate kinase-like domain of Cask {Human (Homo 82.02
d1svia_195 Probable GTPase EngB {Bacillus subtilis [TaxId: 14 82.0
d1xzpa2160 TrmE GTPase domain {Thermotoga maritima [TaxId: 23 81.95
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 81.9
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 81.49
d1ko7a2169 HPr kinase HprK C-terminal domain {Staphylococcus 81.46
d1moza_182 ADP-ribosylation factor {Baker's yeast (Saccharomy 81.31
d1svma_362 Papillomavirus large T antigen helicase domain {Si 81.14
d1s96a_205 Guanylate kinase {Escherichia coli [TaxId: 562]} 81.1
d1g8pa_333 ATPase subunit of magnesium chelatase, BchI {Rhodo 80.86
d1sq5a_308 Pantothenate kinase PanK {Escherichia coli [TaxId: 80.69
d1udxa2180 Obg GTP-binding protein middle domain {Thermus the 80.59
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 80.21
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8.6e-90  Score=695.89  Aligned_cols=276  Identities=87%  Similarity=1.267  Sum_probs=267.7

Q ss_pred             ceeccCccccceEEEEecccccccCCCcccccccccCCCCcccccccccceeeeeeeEeecccccccCceeeeecCCCCC
Q 008638          159 ITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVG  238 (558)
Q Consensus       159 ~~VpVG~~lLGRV~d~lG~PiD~~~~i~~~~~~pI~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGqr~gIfGg~g~G  238 (558)
                      ++||||+++||||+|++|+|||+++++...++|||+.++|++++|.+++++|+||||+||+|+|||||||+||||++|+|
T Consensus         1 l~vpVG~~lLGRVid~lG~piDg~~~i~~~~~~~i~~~~p~~~~R~~i~~~l~TGIraID~l~pigkGQr~~If~~~g~G   80 (276)
T d2jdid3           1 IRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVG   80 (276)
T ss_dssp             CEEECSGGGBTCEECTTSCBCSSSCCCCCSCEEESCCCCCCGGGCCCCCCEECCSCHHHHHHSCEETTCEEEEEECTTSS
T ss_pred             CeeecCccccCCEeCCCcceeCCCCCCCCcccccccCCCCChhHhcCCCcccccCceeeeeeccccCCCEEEeeCCCCCC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhcCCEEEEEEecCCchhHHHHHHHHHHhcccccCcccCCCeEEEEEecCCCCHHHHHHHHHHHHHH
Q 008638          239 KTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV  318 (558)
Q Consensus       239 KT~L~~~~i~n~a~~~~~v~V~~~iGER~rEv~d~~~e~~e~~~~~~~~~~~~~~t~vV~~t~~ep~~~r~~~~~ta~ti  318 (558)
                      ||+|+++|++|+.++|.++|||++||||+||++|++++|.+.+++...  ..++|+++|++|+|+||.+|++++|+|||+
T Consensus        81 Kt~l~~~i~~~~~~~~~~v~V~~~iGer~~ev~~~~~~~~~~~~~~~~--~~~~~tvvv~~~s~~~~~~r~~~~~~a~~i  158 (276)
T d2jdid3          81 KTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLK--DATSKVALVYGQMNEPPGARARVALTGLTV  158 (276)
T ss_dssp             HHHHHHHHHHHHTTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSS--SSCCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCCeEEEEEeccChHHHHHHHHHHHhcCccccc--cccceEEEEEECCCCCHHHHHHHHHHHHHH
Confidence            999999999998788889999999999999999999999999977643  357799999999999999999999999999


Q ss_pred             HHHhHHhCCCcEEeecccchhHHHHHHHHHhhhCCCCCCCCCCCccccchhhhHhhhcCCCCCceeeEEEEeecCCCCCC
Q 008638          319 AEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTD  398 (558)
Q Consensus       319 AEyfRd~~G~dVLl~~DsltR~a~A~rEis~~lgr~P~~~gYpp~l~~~l~~L~ERa~~~~~GSIT~i~~V~v~~dD~~d  398 (558)
                      ||||||++|+||||++||+||||+|+||+|+++||+|+++||||++|+.|++|+||+++.++||||+|++|++|+||++|
T Consensus       159 AEyf~~~~G~~VLv~~Dsltr~A~A~reis~~~ge~p~~~gyp~~l~~~~~~l~ERag~~~~GSIT~i~~v~~~~~d~~d  238 (276)
T d2jdid3         159 AEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTD  238 (276)
T ss_dssp             HHHHHHTTCSCEEEEEECTHHHHHHHHHHHGGGTCCCCGGGCCTTHHHHHHHHHTTSSCCSSCCEEEEEEEECGGGCTTS
T ss_pred             HHHHHhcCCCeEEEEEcchhHHHHHHHHHHHhcCCCCCcccCchhHHHHHHHHHHhhccCCCcccceEEEEEccCCCCCC
Confidence            99999867999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhHhhhcCcEEEeehhhhhcCCcCcccCCCCCccc
Q 008638          399 PAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRM  436 (558)
Q Consensus       399 pip~~~~~ilDg~ivLsr~LA~~g~yPAID~l~S~SR~  436 (558)
                      |||+++++|+||||+|||+||++||||||||+.|+||+
T Consensus       239 pi~~~~~sitdg~i~Lsr~la~~g~~PAId~~~S~SRv  276 (276)
T d2jdid3         239 PAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRI  276 (276)
T ss_dssp             HHHHHHGGGCSEEEEBCHHHHTTTCSSCBCTTSCEETT
T ss_pred             cchHHHHhhcceEEEECHHHHhCCCCCCcCCccCccCC
Confidence            99999999999999999999999999999999999996
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Back     information, alignment and structure
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2jdid1 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, domain 3 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1skye1 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]} Back     information, alignment and structure
>d1fx0b1 a.69.1.1 (B:378-485) F1 ATP synthase beta subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Back     information, alignment and structure
>d2jdid2 b.49.1.1 (D:10-81) F1 ATP synthase beta subunit, domain 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1fx0b2 b.49.1.1 (B:19-97) F1 ATP synthase beta subunit, domain 1 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Back     information, alignment and structure
>d1skye2 b.49.1.1 (E:1-82) F1 ATP synthase beta subunit, domain 1 {Bacillus sp., strain ps3 [TaxId: 1409]} Back     information, alignment and structure
>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Back     information, alignment and structure
>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain 3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1skyb1 a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]} Back     information, alignment and structure
>d2jdia2 b.49.1.1 (A:24-94) F1 ATP synthase alpha subunit, domain 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1skyb2 b.49.1.1 (B:21-95) F1 ATP synthase alpha subunit, domain 1 {Bacillus sp., strain ps3 [TaxId: 1409]} Back     information, alignment and structure
>d1fx0a2 b.49.1.1 (A:25-96) F1 ATP synthase alpha subunit, domain 1 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Back     information, alignment and structure
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Back     information, alignment and structure
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Back     information, alignment and structure
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Back     information, alignment and structure
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Back     information, alignment and structure
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Back     information, alignment and structure
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Back     information, alignment and structure
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Back     information, alignment and structure
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Back     information, alignment and structure
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} Back     information, alignment and structure
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Back     information, alignment and structure
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Back     information, alignment and structure
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure