Citrus Sinensis ID: 008734
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 555 | 2.2.26 [Sep-21-2011] | |||||||
| E0CTY1 | 546 | Glutamyl-tRNA(Gln) amidot | yes | no | 0.974 | 0.990 | 0.769 | 0.0 | |
| Q9LI77 | 537 | Glutamyl-tRNA(Gln) amidot | yes | no | 0.963 | 0.996 | 0.747 | 0.0 | |
| B6U151 | 543 | Glutamyl-tRNA(Gln) amidot | N/A | no | 0.958 | 0.979 | 0.684 | 0.0 | |
| C5Y8Z8 | 541 | Glutamyl-tRNA(Gln) amidot | N/A | no | 0.954 | 0.979 | 0.682 | 0.0 | |
| Q25A68 | 543 | Glutamyl-tRNA(Gln) amidot | N/A | no | 0.945 | 0.966 | 0.676 | 0.0 | |
| Q7X8Z8 | 543 | Glutamyl-tRNA(Gln) amidot | yes | no | 0.886 | 0.906 | 0.706 | 0.0 | |
| B0JSX3 | 483 | Glutamyl-tRNA(Gln) amidot | yes | no | 0.843 | 0.968 | 0.537 | 1e-145 | |
| Q2JUM6 | 509 | Glutamyl-tRNA(Gln) amidot | yes | no | 0.859 | 0.937 | 0.532 | 1e-142 | |
| B7KLL5 | 483 | Glutamyl-tRNA(Gln) amidot | yes | no | 0.861 | 0.989 | 0.514 | 1e-141 | |
| Q31LC2 | 479 | Glutamyl-tRNA(Gln) amidot | yes | no | 0.841 | 0.974 | 0.536 | 1e-140 |
| >sp|E0CTY1|GATA_VITVI Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial OS=Vitis vinifera GN=GATA PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 811 bits (2094), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/556 (76%), Positives = 478/556 (85%), Gaps = 15/556 (2%)
Query: 1 MLSTLHHPP--RRLSRFFPANNKPRHFHTKPVLSSSQPVTDQSPSS-TSPPESQILSIRH 57
MLST+ +P R R FP K R FH+ L SQP T S +SPP+SQIL+IR
Sbjct: 1 MLSTVQNPRFLLRQCRHFPP--KRRRFHSSTPLFLSQPQTLASTDPPSSPPQSQILTIRD 58
Query: 58 SLLSREVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGV 117
+L++R TA +LA+ L+RL+L EPQ+ SFI VS VL+EA+ ID KI RNE +GPLAGV
Sbjct: 59 NLINRRTTAVELAQLSLNRLRLTEPQINSFISVSETVLREAEEIDAKIARNEELGPLAGV 118
Query: 118 LVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTE 177
VGVKDNICT DMPST GSR+LENYRPPFDATAVK+VK+ GIVVGKTNLDEFGMGSTTE
Sbjct: 119 FVGVKDNICTADMPSTGGSRILENYRPPFDATAVKRVKDCGGIVVGKTNLDEFGMGSTTE 178
Query: 178 SSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPT 237
S+FQVTANPWD+SRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPT
Sbjct: 179 GSAFQVTANPWDVSRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPT 238
Query: 238 YGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRVLQISVSQE 297
YGRVSR+GL+AYASSLDVIGCFGSSVADTGILL AI+G+D LD+TSSK E
Sbjct: 239 YGRVSRFGLMAYASSLDVIGCFGSSVADTGILLHAIAGYDGLDSTSSKH----------E 288
Query: 298 VPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEV 357
VP++TSQ +S + LESKPLKGL+VG+IRETL++GVD V S+++GA SHLEELGCT++EV
Sbjct: 289 VPNYTSQFMSISSLESKPLKGLRVGLIRETLDDGVDKAVVSSIVGAASHLEELGCTVTEV 348
Query: 358 SLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGFGSEVKMR 417
SLPSFSLGLPAYYILASSESSSNLSRYDGVRYG+Q A+ LN+LYGDSRAKGFG EVKMR
Sbjct: 349 SLPSFSLGLPAYYILASSESSSNLSRYDGVRYGSQVGADRLNSLYGDSRAKGFGPEVKMR 408
Query: 418 ILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGEKKNDP 477
IL GTYALSAGYYDAYYKRAQQVRTL+QKSFK AL+ENDILISPAAPS AY IGEKKNDP
Sbjct: 409 ILTGTYALSAGYYDAYYKRAQQVRTLVQKSFKAALNENDILISPAAPSPAYSIGEKKNDP 468
Query: 478 LAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLLKVGHIFEQ 537
LAMY+GDIMTVNVNLAGLPALVLPCGFVEGGP GLPVGLQMIGAAFDE KLLKVGHIFEQ
Sbjct: 469 LAMYAGDIMTVNVNLAGLPALVLPCGFVEGGPAGLPVGLQMIGAAFDEEKLLKVGHIFEQ 528
Query: 538 TLQGCRFVPPLIADGI 553
L+G +F+PPL+ADGI
Sbjct: 529 MLKGYKFIPPLLADGI 544
|
Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Vitis vinifera (taxid: 29760) EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: - |
| >sp|Q9LI77|GATA_ARATH Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GATA PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|B6U151|GATA_MAIZE Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial OS=Zea mays GN=GATA PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|C5Y8Z8|GATA_SORBI Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial OS=Sorghum bicolor GN=GATA PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q25A68|GATA_ORYSI Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial OS=Oryza sativa subsp. indica GN=GATA PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q7X8Z8|GATA_ORYSJ Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=GATA PE=3 SV=3 | Back alignment and function description |
|---|
| >sp|B0JSX3|GATA_MICAN Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Microcystis aeruginosa (strain NIES-843) GN=gatA PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q2JUM6|GATA_SYNJA Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain JA-3-3Ab) GN=gatA PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|B7KLL5|GATA_CYAP7 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain PCC 7424) GN=gatA PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q31LC2|GATA_SYNE7 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus elongatus (strain PCC 7942) GN=gatA PE=3 SV=1 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 555 | ||||||
| 449444751 | 550 | PREDICTED: glutamyl-tRNA(Gln) amidotrans | 0.978 | 0.987 | 0.750 | 0.0 | |
| 225446724 | 546 | PREDICTED: glutamyl-tRNA(Gln) amidotrans | 0.974 | 0.990 | 0.769 | 0.0 | |
| 357459277 | 537 | Glutamyl-tRNA(Gln) amidotransferase subu | 0.956 | 0.988 | 0.728 | 0.0 | |
| 449481218 | 578 | PREDICTED: glutamyl-tRNA(Gln) amidotrans | 0.891 | 0.856 | 0.784 | 0.0 | |
| 15230864 | 537 | Amidase family protein [Arabidopsis thal | 0.963 | 0.996 | 0.747 | 0.0 | |
| 11078533 | 537 | Glu-tRNA(Gln) amidotransferase subunit A | 0.963 | 0.996 | 0.747 | 0.0 | |
| 297818082 | 534 | hypothetical protein ARALYDRAFT_484328 [ | 0.958 | 0.996 | 0.745 | 0.0 | |
| 356527014 | 543 | PREDICTED: glutamyl-tRNA(Gln) amidotrans | 0.969 | 0.990 | 0.729 | 0.0 | |
| 255569859 | 561 | glutamyl-tRNA(gln) amidotransferase subu | 0.974 | 0.964 | 0.727 | 0.0 | |
| 356569867 | 506 | PREDICTED: LOW QUALITY PROTEIN: glutamyl | 0.888 | 0.974 | 0.753 | 0.0 |
| >gi|449444751|ref|XP_004140137.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 818 bits (2113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/558 (75%), Positives = 472/558 (84%), Gaps = 15/558 (2%)
Query: 1 MLSTLHHPPRRLSRF-FPANNKPRHFHTK--PVLSSSQPVTDQSPSSTS--PPESQILSI 55
MLSTL P LSRF +KP FH+K P+ + +TDQ P+S S P +SQILSI
Sbjct: 1 MLSTLQPPRCSLSRFTLHLPSKPSFFHSKQTPLSTPHSTLTDQLPTSNSSQPLQSQILSI 60
Query: 56 RHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLA 115
RHSLLSR++TATQLA++YL+RL+ EP LKSF+HVS V +A+ IDDKI RNE +GPLA
Sbjct: 61 RHSLLSRQITATQLADSYLNRLRALEPHLKSFLHVSETVRSDAREIDDKILRNEELGPLA 120
Query: 116 GVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGST 175
GVLV VKDNICT MPSTAGSR+L+ YRPPFDATAVK++KE GIV+GKTNLDEFGMGS+
Sbjct: 121 GVLVAVKDNICTAGMPSTAGSRILDGYRPPFDATAVKRIKELGGIVIGKTNLDEFGMGSS 180
Query: 176 TESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLK 235
TE+S+FQVTANPWD+SRVPGGSSGGSA+AVSARQCVVSLGSDTGGSVRQPASFCGVVGLK
Sbjct: 181 TEASAFQVTANPWDLSRVPGGSSGGSASAVSARQCVVSLGSDTGGSVRQPASFCGVVGLK 240
Query: 236 PTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRVLQISVS 295
PTYGRVSR+GL+AYASSLDVIGC ++VAD GILL +ISGHD LDATSSK+
Sbjct: 241 PTYGRVSRFGLMAYASSLDVIGCLSTTVADAGILLHSISGHDTLDATSSKR--------- 291
Query: 296 QEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLS 355
EV DFTSQ + ESKPL+GL++G+IRETL+ GVD V S + A SHLEELGC+++
Sbjct: 292 -EVSDFTSQFSAVDSFESKPLRGLRIGLIRETLDKGVDGQVNSAIRAAASHLEELGCSIN 350
Query: 356 EVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGFGSEVK 415
EVSLPSFSLGLPAYYILASSESSSNL+RYDGVRYGNQA A++L LY +SRA GFGSEVK
Sbjct: 351 EVSLPSFSLGLPAYYILASSESSSNLARYDGVRYGNQAIADELTGLYENSRATGFGSEVK 410
Query: 416 MRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGEKKN 475
MRILMGTYALSAGYYDAYYKRAQQVRT+IQKSF+ ALDE DILISP APSAAYKIGEK +
Sbjct: 411 MRILMGTYALSAGYYDAYYKRAQQVRTIIQKSFRAALDEYDILISPTAPSAAYKIGEKVD 470
Query: 476 DPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLLKVGHIF 535
DPLAMY+GDIMTVNVNLAGLPALVLPCGFV+ G LPVGLQMIGAAFDEGKLLKVGHIF
Sbjct: 471 DPLAMYAGDIMTVNVNLAGLPALVLPCGFVQDGSSNLPVGLQMIGAAFDEGKLLKVGHIF 530
Query: 536 EQTLQGCRFVPPLIADGI 553
EQTL CRFVPPL+AD I
Sbjct: 531 EQTLADCRFVPPLLADDI 548
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446724|ref|XP_002278150.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Vitis vinifera] gi|353558711|sp|E0CTY1.1|GATA_VITVI RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial; Short=Glu-AdT subunit A; Flags: Precursor gi|302143486|emb|CBI22047.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|357459277|ref|XP_003599919.1| Glutamyl-tRNA(Gln) amidotransferase subunit A [Medicago truncatula] gi|355488967|gb|AES70170.1| Glutamyl-tRNA(Gln) amidotransferase subunit A [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|449481218|ref|XP_004156117.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|15230864|ref|NP_189194.1| Amidase family protein [Arabidopsis thaliana] gi|75273321|sp|Q9LI77.1|GATA_ARATH RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial; Short=Glu-AdT subunit A; Flags: Precursor gi|11994757|dbj|BAB03086.1| glutamyl tRNA amidotransferase, subunit A [Arabidopsis thaliana] gi|15010726|gb|AAK74022.1| AT3g25660/T5M7_8 [Arabidopsis thaliana] gi|23308481|gb|AAN18210.1| At3g25660/T5M7_8 [Arabidopsis thaliana] gi|110741094|dbj|BAE98641.1| putative glutamyl-tRNA amidotransferase subunit A [Arabidopsis thaliana] gi|332643527|gb|AEE77048.1| Amidase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|11078533|gb|AAG29095.1|AF224745_1 Glu-tRNA(Gln) amidotransferase subunit A [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|297818082|ref|XP_002876924.1| hypothetical protein ARALYDRAFT_484328 [Arabidopsis lyrata subsp. lyrata] gi|297322762|gb|EFH53183.1| hypothetical protein ARALYDRAFT_484328 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|356527014|ref|XP_003532109.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|255569859|ref|XP_002525893.1| glutamyl-tRNA(gln) amidotransferase subunit A, putative [Ricinus communis] gi|223534807|gb|EEF36497.1| glutamyl-tRNA(gln) amidotransferase subunit A, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|356569867|ref|XP_003553116.1| PREDICTED: LOW QUALITY PROTEIN: glutamyl-tRNA(Gln) amidotransferase subunit A-like, partial [Glycine max] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 555 | ||||||
| TAIR|locus:2102380 | 537 | AT3G25660 [Arabidopsis thalian | 0.963 | 0.996 | 0.696 | 3.6e-199 | |
| TIGR_CMR|CHY_1102 | 485 | CHY_1102 "glutamyl-tRNA(Gln) a | 0.771 | 0.882 | 0.448 | 1.2e-95 | |
| TIGR_CMR|DET_1335 | 486 | DET_1335 "glutamyl-tRNA(Gln) a | 0.792 | 0.905 | 0.430 | 7e-93 | |
| UNIPROTKB|O53258 | 494 | gatA "Glutamyl-tRNA(Gln) amido | 0.823 | 0.925 | 0.409 | 8.3e-90 | |
| TIGR_CMR|BA_0321 | 485 | BA_0321 "glutamyl-tRNA(Gln) am | 0.803 | 0.919 | 0.421 | 1.2e-88 | |
| TIGR_CMR|CBU_1474 | 483 | CBU_1474 "glutamyl-tRNA(Gln) a | 0.792 | 0.910 | 0.392 | 3.8e-85 | |
| TIGR_CMR|ECH_0703 | 487 | ECH_0703 "glutamyl-tRNA(Gln) a | 0.834 | 0.950 | 0.373 | 1.5e-83 | |
| UNIPROTKB|Q97SE6 | 488 | gatA "Glutamyl-tRNA(Gln) amido | 0.789 | 0.897 | 0.421 | 3.6e-82 | |
| TIGR_CMR|GSU_3381 | 485 | GSU_3381 "glutamyl-tRNA(Gln) a | 0.790 | 0.905 | 0.400 | 3.2e-81 | |
| TIGR_CMR|SPO_2969 | 496 | SPO_2969 "glutamyl-tRNA(Gln) a | 0.830 | 0.929 | 0.352 | 5.5e-77 |
| TAIR|locus:2102380 AT3G25660 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1928 (683.7 bits), Expect = 3.6e-199, P = 3.6e-199
Identities = 384/551 (69%), Positives = 433/551 (78%)
Query: 1 MLSTLHHPPRRLSRFFPANNKPRHFHTKPVLXXXXXXXXXXXXXXXXXXXXILSIRHSLL 60
MLSTL PPR LS P R F + IL+ R SLL
Sbjct: 1 MLSTLQ-PPRSLS-LLPL----RRFQISKTIVSAASSKTIDTSVISPPQSQILTTRRSLL 54
Query: 61 SREVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVG 120
S E TA ++A++YLSR++L EPQLK F+HVS NVLK+AQ ID +I + E +GPLAGVL+G
Sbjct: 55 SGETTAVEIAKSYLSRIRLTEPQLKCFLHVSENVLKDAQEIDQRIAKGEELGPLAGVLIG 114
Query: 121 VKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSS 180
VKDNICT MPSTA SR+LE+YRPPFDATAVKK+KE GIVVGKTN+DEFGMGSTTE+S+
Sbjct: 115 VKDNICTQGMPSTAASRILEHYRPPFDATAVKKIKELGGIVVGKTNMDEFGMGSTTEASA 174
Query: 181 FQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGR 240
FQVTANPWD+SRVP RQC+VSLGSDTGGSVRQPASFCGVVGLKPTYGR
Sbjct: 175 FQVTANPWDLSRVPGGSSGGSAAAVAARQCMVSLGSDTGGSVRQPASFCGVVGLKPTYGR 234
Query: 241 VSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRVLQISVSQEVPD 300
VSR+GL+AYASSLDVIGCFGS+VAD G+LL AISG+DR D+TSSKQ +VP+
Sbjct: 235 VSRFGLMAYASSLDVIGCFGSTVADAGMLLHAISGYDRFDSTSSKQ----------DVPE 284
Query: 301 FTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEVSLP 360
F SQ +S ESKPL G+KVG+IRETLE+GVDSGV+S A SHLE LGC L+EVSLP
Sbjct: 285 FQSQFLSVDHFESKPLNGVKVGIIRETLEDGVDSGVRSATQEAASHLEALGCILTEVSLP 344
Query: 361 SFSLGLPAYYILAXXXXXXXXXRYDGVRYGNQAAAEDLNALYGDSRAKGFGSEVKMRILM 420
SFSLGLPAYY++A RYDGVRYGNQ AE+LN LY SR +GFG EVKMRILM
Sbjct: 345 SFSLGLPAYYVIASSESSSNLSRYDGVRYGNQVMAEELNKLYECSRGEGFGGEVKMRILM 404
Query: 421 GTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGEKKNDPLAM 480
GTYALSAGYYDAYYKRAQQVRTLI+K FK AL++NDILISPAAPSAAYKIGEKK+DPLAM
Sbjct: 405 GTYALSAGYYDAYYKRAQQVRTLIRKDFKAALEQNDILISPAAPSAAYKIGEKKDDPLAM 464
Query: 481 YSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLLKVGHIFEQTLQ 540
Y+GDIMTVNVNLAGLPA+VLPCG VEGGP GLPVGLQMIGAAFDE KLLKVGHIFEQTL+
Sbjct: 465 YAGDIMTVNVNLAGLPAMVLPCGLVEGGPSGLPVGLQMIGAAFDEEKLLKVGHIFEQTLK 524
Query: 541 GCRFVPPLIAD 551
G FVPPL+A+
Sbjct: 525 GSSFVPPLLAN 535
|
|
| TIGR_CMR|CHY_1102 CHY_1102 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|DET_1335 DET_1335 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|O53258 gatA "Glutamyl-tRNA(Gln) amidotransferase subunit A" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|BA_0321 BA_0321 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|CBU_1474 CBU_1474 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|ECH_0703 ECH_0703 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q97SE6 gatA "Glutamyl-tRNA(Gln) amidotransferase subunit A" [Streptococcus pneumoniae TIGR4 (taxid:170187)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|GSU_3381 GSU_3381 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|SPO_2969 SPO_2969 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A5GTM0 | GATA_SYNR3 | 6, ., 3, ., 5, ., - | 0.5050 | 0.8522 | 0.9752 | yes | no |
| Q5N0K5 | GATA_SYNP6 | 6, ., 3, ., 5, ., - | 0.5323 | 0.8414 | 0.9749 | yes | no |
| Q88XP7 | GATA_LACPL | 6, ., 3, ., 5, ., - | 0.4711 | 0.8576 | 0.9774 | yes | no |
| C5Y8Z8 | GATA_SORBI | 6, ., 3, ., 5, ., - | 0.6829 | 0.9549 | 0.9796 | N/A | no |
| Q3AD36 | GATA_CARHZ | 6, ., 3, ., 5, ., - | 0.5090 | 0.8540 | 0.9773 | yes | no |
| Q97EX8 | GATA2_CLOAB | 6, ., 3, ., 5, ., - | 0.4762 | 0.8360 | 0.9707 | yes | no |
| B2IYD7 | GATA_NOSP7 | 6, ., 3, ., 5, ., - | 0.5285 | 0.8486 | 0.9691 | yes | no |
| B0K3S3 | GATA_THEPX | 6, ., 3, ., 5, ., - | 0.5163 | 0.8360 | 0.9508 | yes | no |
| Q3AVK4 | GATA_SYNS9 | 6, ., 3, ., 5, ., - | 0.5071 | 0.8396 | 0.9490 | yes | no |
| B6U151 | GATA_MAIZE | 6, ., 3, ., 5, ., - | 0.6847 | 0.9585 | 0.9797 | N/A | no |
| Q8YY02 | GATA_NOSS1 | 6, ., 3, ., 5, ., - | 0.5295 | 0.8504 | 0.9711 | yes | no |
| Q3M6N4 | GATA_ANAVT | 6, ., 3, ., 5, ., - | 0.5336 | 0.8504 | 0.9711 | yes | no |
| Q25A68 | GATA_ORYSI | 6, ., 3, ., 5, ., - | 0.6765 | 0.9459 | 0.9668 | N/A | no |
| Q7U7F4 | GATA_SYNPX | 6, ., 3, ., 5, ., - | 0.4989 | 0.8396 | 0.9588 | yes | no |
| Q3AKH0 | GATA_SYNSC | 6, ., 3, ., 5, ., - | 0.5142 | 0.8450 | 0.9551 | yes | no |
| B2V855 | GATA_SULSY | 6, ., 3, ., 5, ., - | 0.4790 | 0.8198 | 0.9381 | yes | no |
| Q2JL51 | GATA_SYNJB | 6, ., 3, ., 5, ., - | 0.52 | 0.8594 | 0.9352 | yes | no |
| C0QRF9 | GATA_PERMH | 6, ., 3, ., 5, ., - | 0.4869 | 0.8576 | 0.9814 | yes | no |
| Q31LC2 | GATA_SYNE7 | 6, ., 3, ., 5, ., - | 0.5364 | 0.8414 | 0.9749 | yes | no |
| B0C269 | GATA_ACAM1 | 6, ., 3, ., 5, ., - | 0.5049 | 0.8630 | 0.9937 | yes | no |
| B7KLL5 | GATA_CYAP7 | 6, ., 3, ., 5, ., - | 0.5149 | 0.8612 | 0.9896 | yes | no |
| B1L1G9 | GATA_CLOBM | 6, ., 3, ., 5, ., - | 0.4590 | 0.8378 | 0.9587 | yes | no |
| C1FLD9 | GATA_CLOBJ | 6, ., 3, ., 5, ., - | 0.4569 | 0.8378 | 0.9587 | yes | no |
| B0JSX3 | GATA_MICAN | 6, ., 3, ., 5, ., - | 0.5378 | 0.8432 | 0.9689 | yes | no |
| A4J6Z8 | GATA_DESRM | 6, ., 3, ., 5, ., - | 0.4848 | 0.8486 | 0.9711 | yes | no |
| B8HY89 | GATA_CYAP4 | 6, ., 3, ., 5, ., - | 0.4959 | 0.8396 | 0.9668 | yes | no |
| B1WYP3 | GATA_CYAA5 | 6, ., 3, ., 5, ., - | 0.5169 | 0.8612 | 0.9917 | yes | no |
| Q2JUM6 | GATA_SYNJA | 6, ., 3, ., 5, ., - | 0.532 | 0.8594 | 0.9371 | yes | no |
| A5I6Z3 | GATA_CLOBH | 6, ., 3, ., 5, ., - | 0.4590 | 0.8378 | 0.9587 | yes | no |
| A9WCD8 | GATA_CHLAA | 6, ., 3, ., 5, ., - | 0.4957 | 0.8180 | 0.9322 | yes | no |
| Q7V7T6 | GATA_PROMM | 6, ., 3, ., 5, ., - | 0.5030 | 0.8396 | 0.9588 | yes | no |
| E0CTY1 | GATA_VITVI | 6, ., 3, ., 5, ., - | 0.7697 | 0.9747 | 0.9908 | yes | no |
| B0TDK7 | GATA_HELMI | 6, ., 3, ., 5, ., - | 0.4979 | 0.8378 | 0.9548 | yes | no |
| Q113L8 | GATA_TRIEI | 6, ., 3, ., 5, ., - | 0.5010 | 0.8648 | 0.9896 | yes | no |
| B9LER8 | GATA_CHLSY | 6, ., 3, ., 5, ., - | 0.4957 | 0.8180 | 0.9322 | yes | no |
| A2CA16 | GATA_PROM3 | 6, ., 3, ., 5, ., - | 0.5061 | 0.8414 | 0.9609 | yes | no |
| B7K0I2 | GATA_CYAP8 | 6, ., 3, ., 5, ., - | 0.518 | 0.8630 | 0.9937 | yes | no |
| Q8RC40 | GATA_THETN | 6, ., 3, ., 5, ., - | 0.5071 | 0.8378 | 0.9528 | yes | no |
| B0KBN4 | GATA_THEP3 | 6, ., 3, ., 5, ., - | 0.5184 | 0.8360 | 0.9508 | yes | no |
| P73558 | GATA_SYNY3 | 6, ., 3, ., 5, ., - | 0.5061 | 0.8414 | 0.9668 | N/A | no |
| A7GIK2 | GATA_CLOBL | 6, ., 3, ., 5, ., - | 0.4610 | 0.8378 | 0.9587 | yes | no |
| Q9Z9W9 | GATA_BACHD | 6, ., 3, ., 5, ., - | 0.4969 | 0.8396 | 0.9608 | yes | no |
| A7FYL3 | GATA_CLOB1 | 6, ., 3, ., 5, ., - | 0.4590 | 0.8378 | 0.9587 | yes | no |
| B1XJG8 | GATA_SYNP2 | 6, ., 3, ., 5, ., - | 0.5122 | 0.8486 | 0.9711 | yes | no |
| Q9LI77 | GATA_ARATH | 6, ., 3, ., 5, ., - | 0.7477 | 0.9639 | 0.9962 | yes | no |
| A3CLF8 | GATA_STRSV | 6, ., 3, ., 5, ., - | 0.4938 | 0.8288 | 0.9426 | yes | no |
| Q7X8Z8 | GATA_ORYSJ | 6, ., 3, ., 5, ., - | 0.7069 | 0.8864 | 0.9060 | yes | no |
| Q8DK65 | GATA_THEEB | 6, ., 3, ., 5, ., - | 0.5264 | 0.8432 | 0.9709 | yes | no |
| B1I3K2 | GATA_DESAP | 6, ., 3, ., 5, ., - | 0.4989 | 0.8504 | 0.9593 | yes | no |
| Q7NKF0 | GATA_GLOVI | 6, ., 3, ., 5, ., - | 0.4940 | 0.8720 | 0.9897 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.5 | 0.691 |
| 3rd Layer | 3.5.1.4 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 555 | |||
| PRK00012 | 459 | PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransf | 0.0 | |
| TIGR00132 | 460 | TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) a | 0.0 | |
| COG0154 | 475 | COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransf | 0.0 | |
| pfam01425 | 431 | pfam01425, Amidase, Amidase | 1e-159 | |
| PRK07139 | 439 | PRK07139, PRK07139, amidase; Provisional | 3e-83 | |
| PRK09201 | 465 | PRK09201, PRK09201, amidase; Provisional | 4e-80 | |
| PRK07235 | 502 | PRK07235, PRK07235, amidase; Provisional | 2e-79 | |
| TIGR02715 | 452 | TIGR02715, amido_AtzE, amidohydrolase, AtzE family | 3e-72 | |
| PRK07488 | 472 | PRK07488, PRK07488, indole acetimide hydrolase; Va | 1e-70 | |
| PRK06169 | 466 | PRK06169, PRK06169, putative amidase; Provisional | 1e-63 | |
| PRK08137 | 497 | PRK08137, PRK08137, amidase; Provisional | 5e-61 | |
| PRK07486 | 484 | PRK07486, PRK07486, amidase; Provisional | 7e-56 | |
| PRK06828 | 491 | PRK06828, PRK06828, amidase; Provisional | 3e-51 | |
| PRK08186 | 600 | PRK08186, PRK08186, allophanate hydrolase; Provisi | 1e-49 | |
| TIGR02713 | 561 | TIGR02713, allophanate_hyd, allophanate hydrolase | 2e-49 | |
| PRK07042 | 464 | PRK07042, PRK07042, amidase; Provisional | 6e-49 | |
| PRK07487 | 469 | PRK07487, PRK07487, amidase; Provisional | 6e-46 | |
| PRK07056 | 454 | PRK07056, PRK07056, amidase; Provisional | 8e-46 | |
| PRK12470 | 462 | PRK12470, PRK12470, amidase; Provisional | 3e-44 | |
| PRK06707 | 536 | PRK06707, PRK06707, amidase; Provisional | 7e-44 | |
| PRK06170 | 490 | PRK06170, PRK06170, amidase; Provisional | 1e-43 | |
| PRK08310 | 395 | PRK08310, PRK08310, amidase; Provisional | 1e-40 | |
| PRK06061 | 483 | PRK06061, PRK06061, amidase; Provisional | 2e-40 | |
| PRK06102 | 452 | PRK06102, PRK06102, hypothetical protein; Provisio | 8e-37 | |
| PRK06529 | 482 | PRK06529, PRK06529, amidase; Provisional | 1e-34 | |
| PRK05962 | 424 | PRK05962, PRK05962, amidase; Validated | 3e-33 | |
| PRK07869 | 468 | PRK07869, PRK07869, amidase; Provisional | 6e-30 | |
| PRK11910 | 615 | PRK11910, PRK11910, amidase; Provisional | 3e-24 | |
| PLN02722 | 422 | PLN02722, PLN02722, indole-3-acetamide amidohydrol | 1e-23 | |
| PRK06565 | 566 | PRK06565, PRK06565, amidase; Validated | 7e-15 | |
| PRK06565 | 566 | PRK06565, PRK06565, amidase; Validated | 8e-04 |
| >gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed | Back alignment and domain information |
|---|
Score = 726 bits (1878), Expect = 0.0
Identities = 261/480 (54%), Positives = 345/480 (71%), Gaps = 23/480 (4%)
Query: 59 LLSREVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGV 117
L ++E++A +L + YL R++ +P+L +FI V+ L +A++ D K+ E GPLAG+
Sbjct: 1 LKNKEISAVELTQAYLDRIEEVDPKLNAFITVTEEEALAQAKAADAKLAAGEA-GPLAGI 59
Query: 118 LVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTE 177
+ +KDNICT + +T S++LENY PP+DAT V+K+K +++GKTN+DEF MGS+TE
Sbjct: 60 PIAIKDNICTKGIRTTCASKILENYVPPYDATVVEKLKAAGAVILGKTNMDEFAMGSSTE 119
Query: 178 SSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPT 237
+S+F T NPWD+ RVPGGSSGGSAAAV+A +LGSDTGGS+RQPA+FCGVVGLKPT
Sbjct: 120 NSAFGPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDTGGSIRQPAAFCGVVGLKPT 179
Query: 238 YGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRVLQISVSQE 297
YGRVSRYGLIA+ASSLD IG F +V D +LL+AI+GHD D+TS+
Sbjct: 180 YGRVSRYGLIAFASSLDQIGPFARTVEDAALLLNAIAGHDPKDSTSAD----------VP 229
Query: 298 VPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEV 357
VPD+T+ L K +KGLK+GV +E G+D VK V A+ LE+LG + EV
Sbjct: 230 VPDYTAAL-------GKDIKGLKIGVPKEYFGEGLDPEVKEAVEAAIKKLEDLGAEIVEV 282
Query: 358 SLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAA-AEDLNALYGDSRAKGFGSEVKM 416
SLP LPAYYI+A +E+SSNL+RYDGVRYG +A A+DL +Y +R++GFG EVK
Sbjct: 283 SLPHTKYALPAYYIIAPAEASSNLARYDGVRYGYRAEDAKDLEEMYEKTRSEGFGEEVKR 342
Query: 417 RILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYKIGEKKND 476
RI++GTY LSAGYYDAYY +AQ+VRTLI++ F+ A ++ D+++ P AP+ A+KIGEK +D
Sbjct: 343 RIMLGTYVLSAGYYDAYYLKAQKVRTLIKQDFEKAFEKVDVILGPTAPTTAFKIGEKTDD 402
Query: 477 PLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLLKVGHIFE 536
PLAMY DI TV NLAGLPA+ +P GF +G GLPVGLQ+IG FDE LL V + FE
Sbjct: 403 PLAMYLSDIFTVPANLAGLPAISVPAGFDDG---GLPVGLQLIGKYFDEETLLNVAYAFE 459
|
Length = 459 |
| >gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit | Back alignment and domain information |
|---|
| >gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|216494 pfam01425, Amidase, Amidase | Back alignment and domain information |
|---|
| >gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family | Back alignment and domain information |
|---|
| >gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 555 | |||
| COG0154 | 475 | GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su | 100.0 | |
| PRK00012 | 459 | gatA aspartyl/glutamyl-tRNA amidotransferase subun | 100.0 | |
| PRK06169 | 466 | putative amidase; Provisional | 100.0 | |
| TIGR00132 | 460 | gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) | 100.0 | |
| PRK07486 | 484 | amidase; Provisional | 100.0 | |
| PRK07042 | 464 | amidase; Provisional | 100.0 | |
| PRK06170 | 490 | amidase; Provisional | 100.0 | |
| PRK07487 | 469 | amidase; Provisional | 100.0 | |
| PRK09201 | 465 | amidase; Provisional | 100.0 | |
| PRK06102 | 452 | hypothetical protein; Provisional | 100.0 | |
| TIGR02715 | 452 | amido_AtzE amidohydrolase, AtzE family. Members of | 100.0 | |
| PRK08137 | 497 | amidase; Provisional | 100.0 | |
| PRK07056 | 454 | amidase; Provisional | 100.0 | |
| PRK06061 | 483 | amidase; Provisional | 100.0 | |
| PRK07488 | 472 | indole acetimide hydrolase; Validated | 100.0 | |
| PRK12470 | 462 | amidase; Provisional | 100.0 | |
| PRK07235 | 502 | amidase; Provisional | 100.0 | |
| PRK07869 | 468 | amidase; Provisional | 100.0 | |
| PRK06529 | 482 | amidase; Provisional | 100.0 | |
| PRK08186 | 600 | allophanate hydrolase; Provisional | 100.0 | |
| PRK06828 | 491 | amidase; Provisional | 100.0 | |
| PRK05962 | 424 | amidase; Validated | 100.0 | |
| PRK06707 | 536 | amidase; Provisional | 100.0 | |
| PF01425 | 441 | Amidase: Amidase; InterPro: IPR000120 Amidase sign | 100.0 | |
| PRK11910 | 615 | amidase; Provisional | 100.0 | |
| PRK06565 | 566 | amidase; Validated | 100.0 | |
| PRK07139 | 439 | amidase; Provisional | 100.0 | |
| TIGR02713 | 561 | allophanate_hyd allophanate hydrolase. Allophanate | 100.0 | |
| PRK08310 | 395 | amidase; Provisional | 100.0 | |
| KOG1211 | 506 | consensus Amidases [Translation, ribosomal structu | 100.0 | |
| PLN02722 | 422 | indole-3-acetamide amidohydrolase | 100.0 | |
| KOG1212 | 560 | consensus Amidases [Translation, ribosomal structu | 100.0 |
| >COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-106 Score=853.24 Aligned_cols=462 Identities=51% Similarity=0.853 Sum_probs=404.0
Q ss_pred CCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEec-CHHHHH--HHHhhhHHHHcCCCCCCccccEEEEe
Q 008734 46 SPPESQILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLK--EAQSIDDKIKRNENVGPLAGVLVGVK 122 (555)
Q Consensus 46 ~~~~~s~~~l~~~~~~g~~t~~el~~~~l~ri~~~~~~~na~~~~-~~~al~--~A~~~d~~~~~g~~~gpL~GiPi~vK 122 (555)
.+..+++.+|+++++++++|++|+++++|+||++.|+.+|+|+++ .|.++. +|+++|+++++|+.+|||+||||+||
T Consensus 3 ~~~~~~~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~~na~~~~~~e~a~~~~~A~~~d~~~~~g~~~gpL~GvPiavK 82 (475)
T COG0154 3 ALTELTAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADARLAAGEPLGPLAGVPIAVK 82 (475)
T ss_pred chhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeChhhcchHHHHHHHHHHHhcCCCCCCcCCceEEEe
Confidence 456789999999999999999999999999999999999999999 888755 99999999999988899999999999
Q ss_pred cCccCCCcccCcccchhcCCCCCCchHHHHHHHHCCCeEEEecccccccCCCCCCCCCCCCCCCCCCCCCCCCCCchHHH
Q 008734 123 DNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPGGSSGGSA 202 (555)
Q Consensus 123 D~~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsa 202 (555)
|||+|+|++||+||++++++++++||++|+||+++||||+|||||+||+|+..++|+.||.|+||||++|+|||||||||
T Consensus 83 Dn~~~~G~~Tt~gS~~l~~~~p~~DA~vV~rL~~aGaviiGKTNm~Efa~g~~~~~s~~G~t~NP~~~~~~pGGSSgGSA 162 (475)
T COG0154 83 DNIDTAGLPTTAGSKALEDYVPPYDATVVERLRAAGAVILGKTNMDEFAMGSSTENSAFGPTRNPWNLERVPGGSSGGSA 162 (475)
T ss_pred eccccCCCccCccChhhccCCCCcCcHHHHHHHHCCCEEEeecCCchhhcCCCCCCCCCCCCCCCCCCCCCCCcCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcceeccccCCCcccccccccCcceeccCCCcccCCCCcccCCCCceeccccCCHHHHHHHHHHHcCCCCCCc-
Q 008734 203 AAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDA- 281 (555)
Q Consensus 203 aaVaag~~~~alGtDtgGSiR~PAa~~Gv~g~kPT~g~v~~~g~~~~s~~~d~~Gpmarsv~Dla~ll~~l~g~d~~D~- 281 (555)
+|||+|+|++|+|||||||||+||+||||||||||+||||++|++|+++++|++|||||||+|+++++++|+|+|+.|.
T Consensus 163 aAVAag~~~~alGSDtGGSIR~PAa~cGvvGlKPT~Grvsr~g~~~~a~sld~~GplartV~D~a~l~~v~~g~D~~d~~ 242 (475)
T COG0154 163 AAVAAGLVPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDSP 242 (475)
T ss_pred HHHHhCCcchhcccCCCCchhhhhhhhCceeeCCCCCccCCCCCccccCCcCccCcccCCHHHHHHHHHHHcCCCCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred chhhhHHhhhhcccCCCCchhHHHHHhhhhcCCCCCCcEEEEecccccC-CCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 008734 282 TSSKQVRVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLEN-GVDSGVKSTVLGAVSHLEELGCTLSEVSLP 360 (555)
Q Consensus 282 ~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~lRIGv~~~~~~~-~~~p~v~~a~~~a~~~L~~~G~~Vvev~lp 360 (555)
..... +.++ ... ..+++++|||++.++... ..++++.++++++++.|+++|++|+++++|
T Consensus 243 ~~~~~----------~~~~--~~~-------~~~~~~lrigv~~~~~~~~~~~~~v~~~~~~a~~~l~~~Ga~v~~v~lp 303 (475)
T COG0154 243 LPPPP----------PVPP--ALA-------GKDLKGLRIGVPKELGGGGPLDPDVRAAFEAAVKALEAAGAEVVEVSLP 303 (475)
T ss_pred ccccc----------Cccc--hhh-------ccCCCCcEEEEECcccccCCCcHHHHHHHHHHHHHHHHCCCEEEeccCC
Confidence 22211 2222 122 667899999999988753 688999999999999999999999999999
Q ss_pred Cccc--hhhHHHHHHHhhhhccccccccccccCcchhhhHHHHHhhhhccCCCHHHHHHHHhhhhhhhcCCCHHHHHHHH
Q 008734 361 SFSL--GLPAYYILASSESSSNLSRYDGVRYGNQAAAEDLNALYGDSRAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQ 438 (555)
Q Consensus 361 ~~~~--~~~~~~~l~~~e~~~~l~~~~~~~~g~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~y~~a~ 438 (555)
.+.. ....|+ +.+|++..++.+.... +...+...+++++++|+..|.+.....++..+|.+++
T Consensus 304 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~ri~~G~~~~~~~~~~a~~~~~~ 368 (475)
T COG0154 304 LLSDDYALAAYY----------LARFDGERYGLRAADL-----YGKTRAEGFGPEVKRRIMLGTYLLSAGYYDAYYRRAQ 368 (475)
T ss_pred chhhhhhhhHHH----------HHHhhhhhhhhcchhh-----hhhhhhhcccHHHHHHHhccccccchHHHHHHHHHHH
Confidence 5432 333333 3344555554431100 3445556799999999999987766555555554444
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCCCCCCccccCc-c--cCCcccccccccccccccccCCCeEeecCcccCCCCCCCcee
Q 008734 439 QVRTLIQKSFKTALDENDILISPAAPSAAYKIGE-K--KNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVG 515 (555)
Q Consensus 439 ~~r~~~~~~~~~~~~~~D~Ll~Pt~p~~a~~~~~-~--~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~~~~GlPvG 515 (555)
+ ..+++.+.++|+++|+||+||+|+++|++++ . ..++...+....||.++|++|+|+||||+|+.. +|||+|
T Consensus 369 ~--~~i~~~~~~~f~~~D~ll~Pt~~~~a~~ig~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~---~GlPvG 443 (475)
T COG0154 369 K--TLIRRAFDKLFEEVDVLLTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAISVPAGFTA---DGLPVG 443 (475)
T ss_pred H--HHHHHHHHHHHHhCCEEEeCCCCCCCcccccccccccCHHHHhhhccccccccccCCCeEEeccCCCC---CCCCee
Confidence 4 6679999999999999999999999999997 2 234555555567999999999999999999997 899999
Q ss_pred EEEEcCCCCHHHHHHHHHHHHHHcCCCCCCC
Q 008734 516 LQMIGAAFDEGKLLKVGHIFEQTLQGCRFVP 546 (555)
Q Consensus 516 vQlvg~~~~D~~LL~~A~~lE~~~~~~~~~P 546 (555)
|||+|++|+|..||++|++||+.++|++..|
T Consensus 444 lqlig~~~~d~~LL~~a~~~E~~~~~~~~~~ 474 (475)
T COG0154 444 LQLIGPAFDDATLLRLAAALEQALGWHRRPP 474 (475)
T ss_pred EEEecCCCCHHHHHHHHHHHHHhhCCCCCCC
Confidence 9999999999999999999999999976555
|
|
| >PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed | Back alignment and domain information |
|---|
| >PRK06169 putative amidase; Provisional | Back alignment and domain information |
|---|
| >TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit | Back alignment and domain information |
|---|
| >PRK07486 amidase; Provisional | Back alignment and domain information |
|---|
| >PRK07042 amidase; Provisional | Back alignment and domain information |
|---|
| >PRK06170 amidase; Provisional | Back alignment and domain information |
|---|
| >PRK07487 amidase; Provisional | Back alignment and domain information |
|---|
| >PRK09201 amidase; Provisional | Back alignment and domain information |
|---|
| >PRK06102 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02715 amido_AtzE amidohydrolase, AtzE family | Back alignment and domain information |
|---|
| >PRK08137 amidase; Provisional | Back alignment and domain information |
|---|
| >PRK07056 amidase; Provisional | Back alignment and domain information |
|---|
| >PRK06061 amidase; Provisional | Back alignment and domain information |
|---|
| >PRK07488 indole acetimide hydrolase; Validated | Back alignment and domain information |
|---|
| >PRK12470 amidase; Provisional | Back alignment and domain information |
|---|
| >PRK07235 amidase; Provisional | Back alignment and domain information |
|---|
| >PRK07869 amidase; Provisional | Back alignment and domain information |
|---|
| >PRK06529 amidase; Provisional | Back alignment and domain information |
|---|
| >PRK08186 allophanate hydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK06828 amidase; Provisional | Back alignment and domain information |
|---|
| >PRK05962 amidase; Validated | Back alignment and domain information |
|---|
| >PRK06707 amidase; Provisional | Back alignment and domain information |
|---|
| >PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence | Back alignment and domain information |
|---|
| >PRK11910 amidase; Provisional | Back alignment and domain information |
|---|
| >PRK06565 amidase; Validated | Back alignment and domain information |
|---|
| >PRK07139 amidase; Provisional | Back alignment and domain information |
|---|
| >TIGR02713 allophanate_hyd allophanate hydrolase | Back alignment and domain information |
|---|
| >PRK08310 amidase; Provisional | Back alignment and domain information |
|---|
| >KOG1211 consensus Amidases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PLN02722 indole-3-acetamide amidohydrolase | Back alignment and domain information |
|---|
| >KOG1212 consensus Amidases [Translation, ribosomal structure and biogenesis; Lipid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 555 | ||||
| 3h0l_A | 478 | Structure Of Trna-Dependent Amidotransferase Gatcab | 1e-114 | ||
| 2df4_A | 485 | Structure Of Trna-Dependent Amidotransferase Gatcab | 1e-109 | ||
| 3kfu_E | 471 | Crystal Structure Of The Transamidosome Length = 47 | 1e-104 | ||
| 3al0_A | 475 | Crystal Structure Of The Glutamine Transamidosome F | 1e-101 | ||
| 2gi3_A | 476 | Crystal Structure Of Glutamyl-Trna(Gln) Amidotransf | 1e-96 | ||
| 3a1k_A | 521 | Crystal Structure Of Rhodococcus Sp. N771 Amidase L | 1e-41 | ||
| 3a1i_A | 521 | Crystal Structure Of Rhodococcus Sp. N-771 Amidase | 2e-41 | ||
| 1m21_A | 503 | Crystal Structure Analysis Of The Peptide Amidase P | 1e-38 | ||
| 2dc0_A | 434 | Crystal Structure Of Amidase Length = 434 | 1e-31 | ||
| 4gyr_A | 621 | Granulibacter Bethesdensis Allophanate Hydrolase Ap | 2e-27 | ||
| 1obl_A | 414 | Crystal Structure Of The S133a Mutant Of Malonamida | 1e-22 | ||
| 1o9o_A | 414 | Crystal Structure Of The S131a Mutant Of Malonamida | 1e-22 | ||
| 1obk_A | 414 | Crystal Structure Of The R158q Mutant Of Malonamida | 3e-22 | ||
| 1ock_A | 412 | The Crystal Structure Of Malonamidase E2 From Brady | 1e-21 | ||
| 1obj_A | 414 | Crystal Structure Of The T150a Mutant Of Malonamida | 1e-21 | ||
| 1obi_A | 414 | Crystal Structure Of The G130a Mutant Of Malonamida | 2e-21 | ||
| 1o9q_A | 414 | Crystal Structure Of The S155c Mutant Of Malonamida | 4e-21 | ||
| 1o9n_A | 414 | Crystal Structure Of The K62a Mutant Of Malonamidas | 6e-21 | ||
| 3a2p_A | 493 | Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas | 5e-20 | ||
| 3a2q_A | 493 | Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas | 9e-20 | ||
| 4do3_A | 571 | Structure Of Faah With A Non-steroidal Anti-inflamm | 2e-07 | ||
| 1mt5_A | 537 | Crystal Structure Of Fatty Acid Amide Hydrolase Len | 2e-07 | ||
| 4hbp_A | 550 | Crystal Structure Of Faah In Complex With Inhibitor | 3e-07 | ||
| 3qk5_A | 587 | Crystal Structure Of Fatty Acid Amide Hydrolase Wit | 3e-07 | ||
| 2wap_A | 543 | 3d-Crystal Structure Of Humanized-Rat Fatty Acid Am | 4e-07 | ||
| 2wj1_A | 573 | 3d-Crystal Structure Of Humanized-Rat Fatty Acid Am | 4e-07 | ||
| 2vya_A | 587 | Crystal Structure Of Fatty Acid Amide Hydrolase Con | 5e-07 |
| >pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From Aquifex Aeolicus Length = 478 | Back alignment and structure |
|
| >pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab Complexed With Mn2+ Length = 485 | Back alignment and structure |
| >pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome Length = 471 | Back alignment and structure |
| >pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 475 | Back alignment and structure |
| >pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A Resolution Length = 476 | Back alignment and structure |
| >pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase Length = 521 | Back alignment and structure |
| >pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase Complexed With Benzamide Length = 521 | Back alignment and structure |
| >pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In Complex With The Competitive Inhibitor Chymostatin Length = 503 | Back alignment and structure |
| >pdb|2DC0|A Chain A, Crystal Structure Of Amidase Length = 434 | Back alignment and structure |
| >pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo Length = 621 | Back alignment and structure |
| >pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2 Complexed With Malonate From Bradyrhizobium Japonicum Length = 414 | Back alignment and structure |
| >pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2 Complexed With Malonamate From Bradyrhizobium Japonicum Length = 414 | Back alignment and structure |
| >pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 | Back alignment and structure |
| >pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 412 | Back alignment and structure |
| >pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 | Back alignment and structure |
| >pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 | Back alignment and structure |
| >pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 | Back alignment and structure |
| >pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 | Back alignment and structure |
| >pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Length = 493 | Back alignment and structure |
| >pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Complexed With Substrate Length = 493 | Back alignment and structure |
| >pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory Drug Length = 571 | Back alignment and structure |
| >pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Length = 537 | Back alignment and structure |
| >pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor Length = 550 | Back alignment and structure |
| >pdb|3QK5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase With Small Molecule Inhibitor Length = 587 | Back alignment and structure |
| >pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide Hydrolase (Faah) Conjugated With The Drug-Like Urea Inhibitor Pf-3845 Length = 543 | Back alignment and structure |
| >pdb|2WJ1|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide Hydrolase (Faah) Conjugated With 7-Phenyl-1-(4-(Pyridin-2- Yl)oxazol-2-Yl)heptan-1-One, An Alpha-Ketooxazole Length = 573 | Back alignment and structure |
| >pdb|2VYA|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase Conjugated With The Drug-Like Inhibitor Pf-750 Length = 587 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485 | Back alignment and structure |
|---|
Score = 739 bits (1910), Expect = 0.0
Identities = 222/499 (44%), Positives = 326/499 (65%), Gaps = 23/499 (4%)
Query: 52 ILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHVSN-NVLKEAQSIDDKIKRNEN 110
+ ++ + +++ + + + ++ +P +KSF+ + N +K+AQ +D+ +++
Sbjct: 8 VENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQM 67
Query: 111 VGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEF 170
G L G+ +G+KDNI T + +T S++LE + P +++T ++K+ + + +++GK N+DEF
Sbjct: 68 DGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEF 127
Query: 171 GMGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCG 230
MG +TE+S F+ T NP+D VPGGSSGGSAAAV+A +SLGSDTGGS+RQPA++CG
Sbjct: 128 AMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCG 187
Query: 231 VVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRVL 290
VVG+KPTYGRVSR+GL+A+ASSLD IG +V D I+L AISG D D+TS+
Sbjct: 188 VVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAP----- 242
Query: 291 QISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEEL 350
+ DFTS++ K +KGLKV + +E L GV VK V AV L+ L
Sbjct: 243 -----VDDVDFTSEI-------GKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSL 290
Query: 351 GCTLSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAA-AEDLNALYGDSRAKG 409
G + EVSLP+ G+P+YY++ASSE+SSNLSR+DG+RYG + A L LY SR++G
Sbjct: 291 GAVVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEG 350
Query: 410 FGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYK 469
FG EVK RI +GT+ALS+GYYDAYYK++Q+VRTLI+ F + D+++ P AP+ A+
Sbjct: 351 FGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFN 410
Query: 470 IGEKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLL 529
+GE+ +DPL MY+ D++T VNLAGLP + +PCG G P+GLQ IG FDE L
Sbjct: 411 LGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQSN----GRPIGLQFIGKPFDEKTLY 466
Query: 530 KVGHIFEQTLQGCRFVPPL 548
+V + +E L
Sbjct: 467 RVAYQYETQYNLHDVYEKL 485
|
| >3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478 | Back alignment and structure |
|---|
| >3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471 | Back alignment and structure |
|---|
| >2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Length = 476 | Back alignment and structure |
|---|
| >3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Length = 521 | Back alignment and structure |
|---|
| >2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Length = 434 | Back alignment and structure |
|---|
| >1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503 | Back alignment and structure |
|---|
| >1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Length = 414 | Back alignment and structure |
|---|
| >3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Length = 493 | Back alignment and structure |
|---|
| >3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Length = 573 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 555 | |||
| 3ip4_A | 485 | Glutamyl-tRNA(Gln) amidotransferase subunit A; mul | 100.0 | |
| 3h0l_A | 478 | Glutamyl-tRNA(Gln) amidotransferase subunit A; mul | 100.0 | |
| 3kfu_E | 471 | Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP | 100.0 | |
| 2gi3_A | 476 | Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 | 100.0 | |
| 2dc0_A | 434 | Probable amidase; structural genomics, NPPSFA, nat | 100.0 | |
| 3a2q_A | 493 | 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet | 100.0 | |
| 1m22_A | 503 | Peptide amidase, PAM; eleven-stranded beta sheet, | 100.0 | |
| 3a1k_A | 521 | Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo | 100.0 | |
| 1o9p_A | 414 | Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja | 100.0 | |
| 3ppm_A | 573 | Fatty-acid amide hydrolase 1; protein-inhibitor co | 100.0 |
| >3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-112 Score=909.49 Aligned_cols=481 Identities=47% Similarity=0.805 Sum_probs=439.2
Q ss_pred CCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEec-CHHHHHHHHhhhHHH-HcCCCCCCccccEEEEec
Q 008734 46 SPPESQILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKI-KRNENVGPLAGVLVGVKD 123 (555)
Q Consensus 46 ~~~~~s~~~l~~~~~~g~~t~~el~~~~l~ri~~~~~~~na~~~~-~~~al~~A~~~d~~~-~~g~~~gpL~GiPi~vKD 123 (555)
++..+|+.+|+++|++|++|++||+++||+||+++|+.+|||+++ .|+|+++|+++|+++ ++|+. ||||||||+|||
T Consensus 2 ~l~~~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~~~g~~-gpL~GvPi~vKD 80 (485)
T 3ip4_A 2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMD-GKLFGIPMGIKD 80 (485)
T ss_dssp CGGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCC-STTTTCEEEEET
T ss_pred CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHHhcCCC-CCcCCCEEEEEc
Confidence 367899999999999999999999999999999999999999999 889999999999999 78988 999999999999
Q ss_pred CccCCCcccCcccchhcCCCCCCchHHHHHHHHCCCeEEEecccccccCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHH
Q 008734 124 NICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPGGSSGGSAA 203 (555)
Q Consensus 124 ~~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaa 203 (555)
||+|+|++||+||..++++++.+|+++|+|||+||||++||||||||+++..|+|++||+|+||||+.|+|||||||||+
T Consensus 81 ~~~v~G~~tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~~pGGSSgGsAa 160 (485)
T 3ip4_A 81 NIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAA 160 (485)
T ss_dssp TBCBTTBCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHH
T ss_pred CcccCCCccCCCChhhcCCCCCCCcHHHHHHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCcCCCCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcceeccccCCCcccccccccCcceeccCCCcccCCCCcccCCCCceeccccCCHHHHHHHHHHHcCCCCCCcch
Q 008734 204 AVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATS 283 (555)
Q Consensus 204 aVaag~~~~alGtDtgGSiR~PAa~~Gv~g~kPT~g~v~~~g~~~~s~~~d~~Gpmarsv~Dla~ll~~l~g~d~~D~~s 283 (555)
+||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||||+|+++++++|+|+|+.|+.+
T Consensus 161 aVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl~g~d~~d~~~ 240 (485)
T 3ip4_A 161 AVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTS 240 (485)
T ss_dssp HHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTTS
T ss_pred HhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHHhcCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred hhhHHhhhhcccCCCCchhHHHHHhhhhcCCCCCCcEEEEecccccCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcc
Q 008734 284 SKQVRVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEVSLPSFS 363 (555)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~lRIGv~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~Vvev~lp~~~ 363 (555)
.+. +.++|...+ ..+++++||||+.+++...++++++++++++++.|+++||+|+++++|.+.
T Consensus 241 ~~~----------~~~~~~~~~-------~~~~~~lrigv~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~p~~~ 303 (485)
T 3ip4_A 241 APV----------DDVDFTSEI-------GKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTK 303 (485)
T ss_dssp CCC----------CCCCCSTTT-------TCCCTTCEEEEEGGGGSTTSCHHHHHHHHHHHHHHHHTTCEEEEECCTTGG
T ss_pred ccc----------Cccchhhhh-------ccCccCcEEEEECCcccCCCCHHHHHHHHHHHHHHHHCCCEEEEeCCCcHH
Confidence 644 566666554 457899999999987767899999999999999999999999999999887
Q ss_pred chhhHHHHHHHhhhhccccccccccccCcch-hhhHHHHHhhhhccCCCHHHHHHHHhhhhhhhcCCCHHHHHHHHHHHH
Q 008734 364 LGLPAYYILASSESSSNLSRYDGVRYGNQAA-AEDLNALYGDSRAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRT 442 (555)
Q Consensus 364 ~~~~~~~~l~~~e~~~~l~~~~~~~~g~~~~-~~~l~~l~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~y~~a~~~r~ 442 (555)
+....|+.++..|+..++.+|++..++.+.. ...+.+++...+.+.++++++.++..|.+.....++..+|.++++.|.
T Consensus 304 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~ 383 (485)
T 3ip4_A 304 FGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRT 383 (485)
T ss_dssp GHHHHHHHHHHHHHHHHTTTCSSSSSSCCCTTCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHH
Confidence 7788888999999999999998877766432 345666665555566899999999888765555555567899999999
Q ss_pred HHHHHHHHHhcCCCEEEeCCCCCCccccCcccCCcccccccccccccccccCCCeEeecCcccCCCCCCCceeEEEEcCC
Q 008734 443 LIQKSFKTALDENDILISPAAPSAAYKIGEKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAA 522 (555)
Q Consensus 443 ~~~~~~~~~~~~~D~Ll~Pt~p~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~~~~GlPvGvQlvg~~ 522 (555)
.+++.+.++|+++|+||+|++|.+||++++...++...+....||.+||++|+|+++||+|+. +|||+||||+|++
T Consensus 384 ~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~----~GlPvGlqlvg~~ 459 (485)
T 3ip4_A 384 LIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQS----NGRPIGLQFIGKP 459 (485)
T ss_dssp HHHHHHHHHHTTCSEEEEESSSSSCCBTTTSTTCHHHHHGGGTTTHHHHHHTCCEEEEEEEEE----TTEEEEEEEECST
T ss_pred HHHHHHHHHHhcCCEEEeCCCCCCCCCcccccCChHHHhhhhhhhhhhHhhCCCeEEEeCCcC----CCCCEeEEEEcCC
Confidence 999999999999999999999999999988655555445555699999999999999999997 5999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCCCc
Q 008734 523 FDEGKLLKVGHIFEQTLQGCRFVPPL 548 (555)
Q Consensus 523 ~~D~~LL~~A~~lE~~~~~~~~~P~~ 548 (555)
|+|++||++|++||+.++|+++.|++
T Consensus 460 ~~d~~lL~~A~~lE~~~~~~~~~p~~ 485 (485)
T 3ip4_A 460 FDEKTLYRVAYQYETQYNLHDVYEKL 485 (485)
T ss_dssp TCHHHHHHHHHHHHHHSCCTTTGGGC
T ss_pred CCHHHHHHHHHHHHHhcCcccCCCCC
Confidence 99999999999999999998777764
|
| >3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* | Back alignment and structure |
|---|
| >3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* | Back alignment and structure |
|---|
| >2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A | Back alignment and structure |
|---|
| >1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* | Back alignment and structure |
|---|
| >3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A | Back alignment and structure |
|---|
| >1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A | Back alignment and structure |
|---|
| >3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 555 | ||||
| d2f2aa1 | 485 | c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransf | 1e-147 | |
| d2gi3a1 | 475 | c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransf | 1e-130 | |
| d1m22a_ | 490 | c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomon | 1e-77 | |
| d1mt5a_ | 537 | c.117.1.1 (A:) Fatty acid amide hydrolase (oleamid | 1e-73 | |
| d1ocka_ | 412 | c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium jap | 3e-58 |
| >d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Length = 485 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Amidase signature (AS) enzymes superfamily: Amidase signature (AS) enzymes family: Amidase signature (AS) enzymes domain: Glutamyl-tRNA(Gln) amidotransferase subunit A species: Staphylococcus aureus [TaxId: 1280]
Score = 429 bits (1105), Expect = e-147
Identities = 222/499 (44%), Positives = 325/499 (65%), Gaps = 23/499 (4%)
Query: 52 ILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNEN 110
+ ++ + +++ + + + ++ +P +KSF+ + N +K+AQ +D+ +++
Sbjct: 8 VENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQM 67
Query: 111 VGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEF 170
G L G+ +G+KDNI T + +T S++LE + P +++T ++K+ + + +++GK N+DEF
Sbjct: 68 DGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEF 127
Query: 171 GMGSTTESSSFQVTANPWDISRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCG 230
MG +TE+S F+ T NP+D VPGGSSGGSAAAV+A +SLGSDTGGS+RQPA++CG
Sbjct: 128 AMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCG 187
Query: 231 VVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSSKQVRVL 290
VVG+KPTYGRVSR+GL+A+ASSLD IG +V D I+L AISG D D+T
Sbjct: 188 VVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDST-------- 239
Query: 291 QISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEEL 350
S + DFTS++ K +KGLKV + +E L GV VK V AV L+ L
Sbjct: 240 --SAPVDDVDFTSEI-------GKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSL 290
Query: 351 GCTLSEVSLPSFSLGLPAYYILASSESSSNLSRYDGVRYGNQAA-AEDLNALYGDSRAKG 409
G + EVSLP+ G+P+YY++ASSE+SSNLSR+DG+RYG + A L LY SR++G
Sbjct: 291 GAVVEEVSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEG 350
Query: 410 FGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTLIQKSFKTALDENDILISPAAPSAAYK 469
FG EVK RI +GT+ALS+GYYDAYYK++Q+VRTLI+ F + D+++ P AP+ A+
Sbjct: 351 FGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFN 410
Query: 470 IGEKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAFDEGKLL 529
+GE+ +DPL MY+ D++T VNLAGLP + +PCG G P+GLQ IG FDE L
Sbjct: 411 LGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQSN----GRPIGLQFIGKPFDEKTLY 466
Query: 530 KVGHIFEQTLQGCRFVPPL 548
+V + +E L
Sbjct: 467 RVAYQYETQYNLHDVYEKL 485
|
| >d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Length = 475 | Back information, alignment and structure |
|---|
| >d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Length = 490 | Back information, alignment and structure |
|---|
| >d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 537 | Back information, alignment and structure |
|---|
| >d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Length = 412 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 555 | |||
| d2f2aa1 | 485 | Glutamyl-tRNA(Gln) amidotransferase subunit A {Sta | 100.0 | |
| d2gi3a1 | 475 | Glutamyl-tRNA(Gln) amidotransferase subunit A {The | 100.0 | |
| d1m22a_ | 490 | Peptide amidase Pam {Stenotrophomonas maltophilia | 100.0 | |
| d1mt5a_ | 537 | Fatty acid amide hydrolase (oleamide hydrolase) {R | 100.0 | |
| d1ocka_ | 412 | Malonamidase E2 {Bradyrhizobium japonicum [TaxId: | 100.0 |
| >d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Amidase signature (AS) enzymes superfamily: Amidase signature (AS) enzymes family: Amidase signature (AS) enzymes domain: Glutamyl-tRNA(Gln) amidotransferase subunit A species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=9.5e-108 Score=880.36 Aligned_cols=482 Identities=46% Similarity=0.802 Sum_probs=448.3
Q ss_pred CCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEec-CHHHHHHHHhhhHHHHcCCCCCCccccEEEEecC
Q 008734 46 SPPESQILSIRHSLLSREVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDN 124 (555)
Q Consensus 46 ~~~~~s~~~l~~~~~~g~~t~~el~~~~l~ri~~~~~~~na~~~~-~~~al~~A~~~d~~~~~g~~~gpL~GiPi~vKD~ 124 (555)
.+.+.|+.||+++|++|++|++||+++||+||+++|+++|||+++ .++|+++|+++|+++++|+.+||||||||+|||+
T Consensus 2 ~~~~~s~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~~~~~gpL~GiPi~vKD~ 81 (485)
T d2f2aa1 2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDN 81 (485)
T ss_dssp CSTTCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETT
T ss_pred CCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCcCeEEEEcc
Confidence 377899999999999999999999999999999999999999999 8899999999999999999999999999999999
Q ss_pred ccCCCcccCcccchhcCCCCCCchHHHHHHHHCCCeEEEecccccccCCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHH
Q 008734 125 ICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPGGSSGGSAAA 204 (555)
Q Consensus 125 ~~v~G~~tt~Gs~~~~~~~~~~da~~V~~L~~aGAi~~gkt~~~e~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaa 204 (555)
|+|+|++||+||..++++.+..|+++|++|+++|||++|||||+||+++..+.|..||+|+||||+.++|||||||||++
T Consensus 82 ~~v~g~~tt~Gs~~~~~~~~~~d~~~v~~l~~~Gai~~gkt~~~e~~~~~~~~n~~~g~~~NP~~~~~~~GGSSgGsaaa 161 (485)
T d2f2aa1 82 IITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAA 161 (485)
T ss_dssp BCBTTBCCCTTCGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHH
T ss_pred cccCCCccCCcChhhccCCccccccccccccccccccccccchhhhcccccccCccccCcCCCCCcccccCCccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcceeccccCCCcccccccccCcceeccCCCcccCCCCcccCCCCceeccccCCHHHHHHHHHHHcCCCCCCcchh
Q 008734 205 VSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRYGLIAYASSLDVIGCFGSSVADTGILLSAISGHDRLDATSS 284 (555)
Q Consensus 205 Vaag~~~~alGtDtgGSiR~PAa~~Gv~g~kPT~g~v~~~g~~~~s~~~d~~Gpmarsv~Dla~ll~~l~g~d~~D~~s~ 284 (555)
||+|++++|||||||||||+||+||||||||||+|+||+.|++|+++++|++|||||+|+|+++++++|.|+++.|+.+.
T Consensus 162 vA~g~~~~alGtDt~GSiR~PAa~~Gl~G~kPt~G~is~~g~~~~~~~~d~~Gpmar~v~D~~~ll~~~~g~~~~d~~~~ 241 (485)
T d2f2aa1 162 VAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSA 241 (485)
T ss_dssp HHTTSCSCEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCBTTBTTSC
T ss_pred HHhccCceEEecCCCchhhhhHHHhCceeecCCCCCCCCCCCCCCcccCCeeccccCCHHHHHHHHhhcccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred hhHHhhhhcccCCCCchhHHHHHhhhhcCCCCCCcEEEEecccccCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCccc
Q 008734 285 KQVRVLQISVSQEVPDFTSQLISAALLESKPLKGLKVGVIRETLENGVDSGVKSTVLGAVSHLEELGCTLSEVSLPSFSL 364 (555)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~lRIGv~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~Vvev~lp~~~~ 364 (555)
+. +.++|...+ ..+++++|||++.+++...++++++++++++++.|+++|++|+++++|....
T Consensus 242 ~~----------~~~~~~~~~-------~~~~~~lrig~~~~~~~~~~~~~i~~a~~~a~~~L~~~G~~v~ev~lp~~~~ 304 (485)
T d2f2aa1 242 PV----------DDVDFTSEI-------GKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTKF 304 (485)
T ss_dssp CC----------CCCCCSTTT-------TCCCTTCEEEEEGGGGSTTSCHHHHHHHHHHHHHHHHTTCEEEEECCTTGGG
T ss_pred CC----------Cccchhhhh-------cCCccCCEEEEEcccccCcCCHHHHHHHHHHHHHHHHCCCEEEEeCCCchhh
Confidence 54 556666655 5678999999999988889999999999999999999999999999998887
Q ss_pred hhhHHHHHHHhhhhccccccccccccCcch-hhhHHHHHhhhhccCCCHHHHHHHHhhhhhhhcCCCHHHHHHHHHHHHH
Q 008734 365 GLPAYYILASSESSSNLSRYDGVRYGNQAA-AEDLNALYGDSRAKGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTL 443 (555)
Q Consensus 365 ~~~~~~~l~~~e~~~~l~~~~~~~~g~~~~-~~~l~~l~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~y~~a~~~r~~ 443 (555)
....+..+...|+..++.+|++..++.... ...+.+++...+.+.+++++..++..+.......+....|.++++.|..
T Consensus 305 ~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~ 384 (485)
T d2f2aa1 305 GIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTL 384 (485)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSSSSSSCCCSSCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhccccccccCHHHHHHHhhhhhcCHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHH
Confidence 778888888899999999998877766544 4566777777677778999999999998887777888889999999999
Q ss_pred HHHHHHHHhcCCCEEEeCCCCCCccccCcccCCcccccccccccccccccCCCeEeecCcccCCCCCCCceeEEEEcCCC
Q 008734 444 IQKSFKTALDENDILISPAAPSAAYKIGEKKNDPLAMYSGDIMTVNVNLAGLPALVLPCGFVEGGPIGLPVGLQMIGAAF 523 (555)
Q Consensus 444 ~~~~~~~~~~~~D~Ll~Pt~p~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~~~~GlPvGvQlvg~~~ 523 (555)
+++.++++|+++|+||+|+++.++|++++...++...+..+.||.+||++|+|+++||+|+. +|+|+||||+|++|
T Consensus 385 ~~~~~~~~f~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~G~~----dGlPvGlQiig~~~ 460 (485)
T d2f2aa1 385 IKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQS----NGRPIGLQFIGKPF 460 (485)
T ss_dssp HHHHHHHHTTTCSEEEEESSSSSCCBTTTSTTCHHHHHGGGTTTHHHHHHTCCEEEEEEEEE----TTEEEEEEEECSTT
T ss_pred HHHHHHHHHccCCEEEeCCCCCCCCCcccccCCHHHHhhhhHHHHHHHHHCCCeEEEECCCC----CCCCEeEEEECCCC
Confidence 99999999999999999999999999998766666556666789999999999999999987 59999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCCCCCCc
Q 008734 524 DEGKLLKVGHIFEQTLQGCRFVPPL 548 (555)
Q Consensus 524 ~D~~LL~~A~~lE~~~~~~~~~P~~ 548 (555)
+|+.||++|++||++++|++..|.|
T Consensus 461 ~D~~LL~~A~~~E~~~~~~~~~p~l 485 (485)
T d2f2aa1 461 DEKTLYRVAYQYETQYNLHDVYEKL 485 (485)
T ss_dssp CHHHHHHHHHHHHHHSCCTTTGGGC
T ss_pred CHHHHHHHHHHHHhhCCCCcCCCCC
Confidence 9999999999999999999888764
|
| >d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} | Back information, alignment and structure |
|---|
| >d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|