Citrus Sinensis ID: 008741

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-----
MSDSKLFVFGSFTEEETRSWLQSQSSGSVKKPVSSRRAEKPAEDKELQFGSLNFGTESSLVGTTDEPNGKSVVDGPVVFQPSTLLKKDDKVKSVGASNDHDLGAVGCPKENGHIKNSTNGPALSNGVNHLKADGIDFSSFHQNAGGHANPSPISKFHVLCDGNIDGRDQNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV
cccccEEEEccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHccccccccccccHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHcccccccccccccccccccccEEEEEEEEEEEEEccccccccccccEEEEEEccccccccHHHHHHHcccccccccccccccccccEEEEEEEEEEcccccEEEEEEccEEccccccccccEEEEcccccccccccccccccccccEEEEEEEEEEcccccccEEEEEEEcccccEEEEcccccEEEccccccccccEEEEEEEc
ccccEEEEEcccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccHHHHHHHHHHHHccHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHccccccHHHHHHHHHHHHccccHHHHHHcccEEEEEEEEcccEcEEEcccEEEcccccccccccHHHHHHHHccHHHcccccccccccccEEEcEEEEEEEccccEEEEEEEEEcccccccccEEEEEcccccHcccHHHcccccccccEEEEEEEEEEccccccccEEEEEEEcccccEEEEccccEEEccHHHcccccEEEEEEEEc
msdsklfvfgsfteeetrswlqsqssgsvkkpvssrraekpaedkelqfgslnfgtesslvgttdepngksvvdgpvvfqpstllkkddkvksvgasndhdlgavgcpkenghiknstngpalsngvnhlkadgidfssfhqnagghanpspiskfhvlcdgnidgrdqnaaacnssisgskevpmkainepvksvkdllprglinsgnlCFLNATLQALMSCSPFVQLLQELRtrdipkagyptLTAFVGfvsdfdtpsggsskkknisvldigrpfspsMFEAVLKNftpdvpnsisgrprqEDAQEFLSFIMDQMHDELLKLqgestsingaNTALVSLaeedewetvgpknksavtrtqsflpsalsdifGGQLKSVVKAQgnkasatvqPFLLLHLDIYSEAVHTIEDALRLfsapenlegyrtsstgnagvvtaKKSVKIQTLSKILILHLMRfsygsqgstklhksvrfplqlvlgrdllvtpsaegrKYELVATVThhgrdpskghytadaryfndqwlhfddasvtaigtskvlhDQAYVLFYKQV
MSDSKLFVFGsfteeetrswlqsqssgsvkkpvssrraekpaedkelqfgslnfGTESSLVGttdepngksvvdgpvvfqpstllkkddkvKSVGASNDHDLGAVGCPKENGHIKNSTNGPALSNGVNHLKADGIDFSSFHQNAGGHANPSPISKFHVLCDGNIDGRDQNAAACNSsisgskevpmkaINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSdfdtpsggsskkknisvLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGyrtsstgnagvvtakksvkIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATvthhgrdpskghYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV
MSDSKLFVFGSFTEEETRSWLQSQSSGSVKKPVSSRRAEKPAEDKELQFGSLNFGTESSLVGTTDEPNGKSVVDGPVVFQPSTLLKKDDKVKSVGASNDHDLGAVGCPKENGHIKNSTNGPALSNGVNHLKADGIDFSSFHQNAGGHANPSPISKFHVLCDGNIDGRDQNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV
*******V*************************************************************************************************************************************************SKFHVLCDGNI******************************SVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDF**************VLDIG******MFEAVLK*********************FLSFIMDQMHDELL**************ALV************************FLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY***
****KLF*FG*********************************************************************************************************************************************************************************************LPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD*****YPTLTAFVGFVSDFDTPS**********VLDIGRPFSPSMFEAVLKNFTPDVPN*******QEDAQEFLSFIMDQMHDELL***********************************VTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDL******EGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV
MSDSKLFVFGSFT*******************************KELQFGSLNFGTESSLVGTTDEPNGKSVVDGPVVFQPSTLLKKDDKVKSVGASNDHDLGAVGCPKENGHIKNSTNGPALSNGVNHLKADGIDFSSFHQNAGGHANPSPISKFHVLCDGNIDGRDQNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFD********KKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAE************SAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV
***SKLFVFGSFTEEETRSWLQ****************************************************************************************************************************************************************************SVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQ********************EWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV
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MSDSKLFVFGSFTEEETRSWLQSQSSGSVKKPVSSRRAEKPAEDKELQFGSLNFGTESSLVGTTDEPNGKSVVDGPVVFQPSTLLKKDDKVKSVGASNDHDLGAVGCPKENGHIKNSTNGPALSNGVNHLKADGIDFSSFHQNAGGHANPSPISKFHVLCDGNIDGRDQNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query555 2.2.26 [Sep-21-2011]
Q9FPS3551 Ubiquitin carboxyl-termin yes no 0.967 0.974 0.571 1e-164
Q7ZXR7805 Ubiquitin carboxyl-termin N/A no 0.645 0.444 0.358 5e-63
Q2NL57791 Ubiquitin carboxyl-termin N/A no 0.643 0.451 0.354 2e-62
Q6DIJ4805 Ubiquitin carboxyl-termin yes no 0.645 0.444 0.353 7e-62
Q5ZJN4785 Ubiquitin carboxyl-termin yes no 0.645 0.456 0.354 4e-60
Q3KR59794 Ubiquitin carboxyl-termin yes no 0.628 0.439 0.367 1e-59
P52479792 Ubiquitin carboxyl-termin yes no 0.639 0.448 0.360 6e-58
Q14694798 Ubiquitin carboxyl-termin yes no 0.639 0.444 0.350 2e-57
A5PJS6800 Ubiquitin carboxyl-termin yes no 0.639 0.443 0.345 9e-56
O96612451 Ubiquitin hydrolase B OS= yes no 0.452 0.556 0.405 2e-45
>sp|Q9FPS3|UBP24_ARATH Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabidopsis thaliana GN=UBP24 PE=1 SV=1 Back     alignment and function desciption
 Score =  580 bits (1494), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 325/569 (57%), Positives = 394/569 (69%), Gaps = 32/569 (5%)

Query: 1   MSDSKLFVFGSFTEEETRSWLQSQSSGSVKKPVSSRRAEKPAEDKELQFGSLNFGTESSL 60
           MS+ K+FVFGSFTE ETRS+ +       +KP    +  K      +QFGSLN   E+S 
Sbjct: 1   MSEKKVFVFGSFTEHETRSFFE-------QKPTKDPQNSKDKCVGSIQFGSLNLAAENSS 53

Query: 61  VGTTDEPNGKSVVDGPVVFQPSTLLKKDDKVKSVGASNDHDL-----GAVGCPK---ENG 112
           V T  E   K   DG V    S       +  S   +ND D       ++  P+   +NG
Sbjct: 54  VNTNGELK-KGEADGTVKSAGSQERLDASRPASSDKNNDSDAKLPRKNSLRVPEHVVQNG 112

Query: 113 HIKN-STNGPALSNGVNHLKADGIDFSSFHQNAGGHANP---SPISKFHVLCDGNIDGRD 168
            IK  S +  +L+NGV  +K D I   +    + G ++P   +  SKF  L     D  D
Sbjct: 113 IIKEISESNKSLNNGV-AVKTDPIGLDNLSM-SDGESDPVYKASSSKFQAL-----DNED 165

Query: 169 QNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQ 228
            ++ + + SI   K   +K   E V  VKD  PRGLIN+GNLCFLNATLQAL+SCSPFVQ
Sbjct: 166 FSSDSSSGSIQRKKN--LKVPTESVPPVKDFTPRGLINAGNLCFLNATLQALLSCSPFVQ 223

Query: 229 LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLK 288
           LLQ+++ +DIPKA  PTL AF  F+S+ D PS  SS + N++V++ GRPF P+MFE VL+
Sbjct: 224 LLQKIQLQDIPKADSPTLAAFSEFISELDVPSS-SSIRNNVTVVEAGRPFRPAMFEGVLR 282

Query: 289 NFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEED-- 346
           NFTPDV N++SGRPRQEDAQEFLSFIMDQMHDELLKL+ +S  +  + ++++S A +D  
Sbjct: 283 NFTPDVLNNMSGRPRQEDAQEFLSFIMDQMHDELLKLKEQSPKVTASKSSVISSANDDGD 342

Query: 347 EWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSE 406
           EWETVGPKNKSAVTRTQSF+PS LS+IFGGQLKSVVKA+G KASATVQP+LLLHLDI+ +
Sbjct: 343 EWETVGPKNKSAVTRTQSFVPSELSEIFGGQLKSVVKAKGTKASATVQPYLLLHLDIHPD 402

Query: 407 AVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQG 466
            V  IEDAL LFSA E+LEGYR S TG  GVV+A KS+KIQ LSKI+ILHLMRFSYGSQG
Sbjct: 403 GVQGIEDALHLFSAQEDLEGYRASVTGKTGVVSASKSIKIQKLSKIMILHLMRFSYGSQG 462

Query: 467 STKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQW 526
           STKL K V+FPL+L L R  LV+ S E  +YELVAT+THHG DPSKGHYT DAR  N QW
Sbjct: 463 STKLRKGVKFPLELNLNRSHLVSLSNESLRYELVATITHHGWDPSKGHYTTDARRKNGQW 522

Query: 527 LHFDDASVTAIGTSKVLHDQAYVLFYKQV 555
           L FDDASVT IGT  VLHDQAYVLFYKQV
Sbjct: 523 LRFDDASVTPIGTKLVLHDQAYVLFYKQV 551
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|Q7ZXR7|UB10B_XENLA Ubiquitin carboxyl-terminal hydrolase 10-B OS=Xenopus laevis GN=usp10-b PE=2 SV=1 Back     alignment and function description
>sp|Q2NL57|UB10A_XENLA Ubiquitin carboxyl-terminal hydrolase 10-A OS=Xenopus laevis GN=usp10-a PE=2 SV=1 Back     alignment and function description
>sp|Q6DIJ4|UBP10_XENTR Ubiquitin carboxyl-terminal hydrolase 10 OS=Xenopus tropicalis GN=usp10 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZJN4|UBP10_CHICK Ubiquitin carboxyl-terminal hydrolase 10 OS=Gallus gallus GN=USP10 PE=2 SV=1 Back     alignment and function description
>sp|Q3KR59|UBP10_RAT Ubiquitin carboxyl-terminal hydrolase 10 OS=Rattus norvegicus GN=Usp10 PE=2 SV=1 Back     alignment and function description
>sp|P52479|UBP10_MOUSE Ubiquitin carboxyl-terminal hydrolase 10 OS=Mus musculus GN=Usp10 PE=1 SV=3 Back     alignment and function description
>sp|Q14694|UBP10_HUMAN Ubiquitin carboxyl-terminal hydrolase 10 OS=Homo sapiens GN=USP10 PE=1 SV=2 Back     alignment and function description
>sp|A5PJS6|UBP10_BOVIN Ubiquitin carboxyl-terminal hydrolase 10 OS=Bos taurus GN=USP10 PE=2 SV=1 Back     alignment and function description
>sp|O96612|UBPB_DICDI Ubiquitin hydrolase B OS=Dictyostelium discoideum GN=ubpB PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query555
225449917553 PREDICTED: ubiquitin carboxyl-terminal h 0.978 0.981 0.640 0.0
255544103605 conserved hypothetical protein [Ricinus 0.926 0.849 0.623 0.0
356542965530 PREDICTED: ubiquitin carboxyl-terminal h 0.935 0.979 0.602 1e-177
356531617532 PREDICTED: ubiquitin carboxyl-terminal h 0.938 0.979 0.600 1e-175
357450917532 Ubiquitin carboxyl-terminal hydrolase [M 0.956 0.998 0.597 1e-170
449507688542 PREDICTED: ubiquitin carboxyl-terminal h 0.958 0.981 0.573 1e-169
297798878550 ubiquitin-specific protease 24 [Arabidop 0.967 0.976 0.575 1e-164
18417689551 ubiquitin carboxyl-terminal hydrolase 24 0.967 0.974 0.571 1e-163
222423693551 AT4G30890 [Arabidopsis thaliana] 0.967 0.974 0.571 1e-163
449451721522 PREDICTED: ubiquitin carboxyl-terminal h 0.891 0.948 0.589 1e-161
>gi|225449917|ref|XP_002268974.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Vitis vinifera] gi|296081305|emb|CBI17749.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/562 (64%), Positives = 424/562 (75%), Gaps = 19/562 (3%)

Query: 1   MSDSKLFVFGSFTEEETRSWLQSQSSGSVKKPVSSRRAEKPAEDKELQFGSLNFGTESSL 60
           MSDSKL +FGSFTE+ETRS L+          + S  AEKPA  KELQFGS++F T  +L
Sbjct: 4   MSDSKLLLFGSFTEDETRSLLR----------LPSGNAEKPAAKKELQFGSVDFVTGRAL 53

Query: 61  VGTTDEPNGKS-VVDGPVVFQPSTLLKKDDKVKSVGASNDHDLGAVGCPKENGHIKNSTN 119
               +E   ++    GP+ F  S LLKKDD+ KSV   N     A G PKENG + + T+
Sbjct: 54  ASVGNELCRQADSSKGPIDFCSSNLLKKDDETKSVDGVNKLSSEAAGTPKENGGVHDFTH 113

Query: 120 GPALSNGV-NHLKADGIDFSSF--HQNAGGHANPSPISKFHVLCDGNIDGRDQNAAACNS 176
              L NGV N L  D  +  S    QN   H N     + HV+ +     RD N    +S
Sbjct: 114 SSPLGNGVVNELNPDRFNLDSLCLSQNKE-HLNQFQSLESHVVEEECSKERDLNGTIDDS 172

Query: 177 S--ISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELR 234
           S  +   KE+ +KA N P  +VK+LLPRGLINSGNLCFLNATLQAL+SC+PF+QLLQELR
Sbjct: 173 STFVPLKKEI-LKAPNGPAPAVKNLLPRGLINSGNLCFLNATLQALLSCTPFIQLLQELR 231

Query: 235 TRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDV 294
            RDIPK GYPTLTAF  FVS+FD P+  S KKK+++ ++ GRPFSP+MFE VLKNFTPDV
Sbjct: 232 IRDIPKVGYPTLTAFAEFVSEFDMPTDLSLKKKDLNGVETGRPFSPAMFEGVLKNFTPDV 291

Query: 295 PNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPK 354
           PN ISGRPRQEDAQEFLSF+MDQMHDELLKL+G  +++NG  ++LVS AE+DEWETVGPK
Sbjct: 292 PNKISGRPRQEDAQEFLSFVMDQMHDELLKLEGFFSNLNGGKSSLVSSAEDDEWETVGPK 351

Query: 355 NKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDA 414
           NKSAVTRTQSF+PS LS IFGGQL+SVVKA+GNKASATVQPFLLLHLDI  EA++TIEDA
Sbjct: 352 NKSAVTRTQSFVPSELSKIFGGQLRSVVKARGNKASATVQPFLLLHLDILPEAIYTIEDA 411

Query: 415 LRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYG-SQGSTKLHKS 473
           LRLFSAPE LEGYRTS TG AG+VTA KSVKIQ LS+I+ILHLMRF Y  +QGSTKLHK 
Sbjct: 412 LRLFSAPETLEGYRTSGTGKAGLVTASKSVKIQKLSEIMILHLMRFYYDENQGSTKLHKP 471

Query: 474 VRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDAS 533
           V FPL+LVLGR+LLV+P+ EGRKYELVAT+THHGRDPSKGHYT DAR+ +  WL FDD++
Sbjct: 472 VTFPLELVLGRELLVSPTTEGRKYELVATITHHGRDPSKGHYTTDARHHSGHWLRFDDSA 531

Query: 534 VTAIGTSKVLHDQAYVLFYKQV 555
           V  + TSKVLH+  YVLFYKQV
Sbjct: 532 VNVVSTSKVLHEHPYVLFYKQV 553

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255544103|ref|XP_002513114.1| conserved hypothetical protein [Ricinus communis] gi|223548125|gb|EEF49617.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356542965|ref|XP_003539934.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Glycine max] Back     alignment and taxonomy information
>gi|356531617|ref|XP_003534373.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Glycine max] Back     alignment and taxonomy information
>gi|357450917|ref|XP_003595735.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355484783|gb|AES65986.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449507688|ref|XP_004163102.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297798878|ref|XP_002867323.1| ubiquitin-specific protease 24 [Arabidopsis lyrata subsp. lyrata] gi|297313159|gb|EFH43582.1| ubiquitin-specific protease 24 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18417689|ref|NP_567860.1| ubiquitin carboxyl-terminal hydrolase 24 [Arabidopsis thaliana] gi|42573095|ref|NP_974644.1| ubiquitin carboxyl-terminal hydrolase 24 [Arabidopsis thaliana] gi|334187041|ref|NP_001190875.1| ubiquitin carboxyl-terminal hydrolase 24 [Arabidopsis thaliana] gi|75262799|sp|Q9FPS3.1|UBP24_ARATH RecName: Full=Ubiquitin carboxyl-terminal hydrolase 24; AltName: Full=Deubiquitinating enzyme 24; Short=AtUBP24; AltName: Full=Ubiquitin thioesterase 24; AltName: Full=Ubiquitin-specific-processing protease 24 gi|11993488|gb|AAG42762.1|AF302672_1 ubiquitin-specific protease 24 [Arabidopsis thaliana] gi|332660424|gb|AEE85824.1| ubiquitin carboxyl-terminal hydrolase 24 [Arabidopsis thaliana] gi|332660425|gb|AEE85825.1| ubiquitin carboxyl-terminal hydrolase 24 [Arabidopsis thaliana] gi|332660426|gb|AEE85826.1| ubiquitin carboxyl-terminal hydrolase 24 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|222423693|dbj|BAH19813.1| AT4G30890 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449451721|ref|XP_004143610.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query555
TAIR|locus:2126649551 UBP24 "ubiquitin-specific prot 0.967 0.974 0.572 1.4e-151
DICTYBASE|DDB_G0275021451 ubpB "putative ubiquitin carbo 0.459 0.565 0.403 1.4e-54
UNIPROTKB|G4N4M01024 MGG_05996 "Ubiquitin C-termina 0.603 0.327 0.352 2.4e-49
ASPGD|ASPL0000031525840 AN5186 [Emericella nidulans (t 0.605 0.4 0.346 1.1e-48
UNIPROTKB|Q6DIJ4805 usp10 "Ubiquitin carboxyl-term 0.554 0.382 0.34 3.4e-48
UNIPROTKB|Q2NL57791 usp10-a "Ubiquitin carboxyl-te 0.554 0.389 0.345 3.5e-48
UNIPROTKB|Q7ZXR7805 usp10-b "Ubiquitin carboxyl-te 0.554 0.382 0.345 7.4e-47
RGD|1561965794 Usp10 "ubiquitin specific pept 0.556 0.389 0.352 1.2e-46
UNIPROTKB|Q3KR59794 Usp10 "Ubiquitin carboxyl-term 0.556 0.389 0.352 1.2e-46
ZFIN|ZDB-GENE-030219-132870 usp10 "ubiquitin specific pept 0.529 0.337 0.352 6.9e-46
TAIR|locus:2126649 UBP24 "ubiquitin-specific protease 24" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1479 (525.7 bits), Expect = 1.4e-151, P = 1.4e-151
 Identities = 326/569 (57%), Positives = 398/569 (69%)

Query:     1 MSDSKLFVFGSFTEEETRSWLQSQSSGSVKKPVSSRRAEKPAEDKELQFGSLNFGTESSL 60
             MS+ K+FVFGSFTE ETRS+ + + +   K P +S+  +K      +QFGSLN   E+S 
Sbjct:     1 MSEKKVFVFGSFTEHETRSFFEQKPT---KDPQNSK--DKCVGS--IQFGSLNLAAENSS 53

Query:    61 VGTTDEPNGKSVVDGPVVFQPSTLLKKDDKVKSVGASNDHDL-----GAVGCPK---ENG 112
             V T  E   K   DG V    S       +  S   +ND D       ++  P+   +NG
Sbjct:    54 VNTNGELK-KGEADGTVKSAGSQERLDASRPASSDKNNDSDAKLPRKNSLRVPEHVVQNG 112

Query:   113 HIKN-STNGPALSNGVNHLKADGIDFSSFHQNAGGHANP---SPISKFHVLCDGNIDGRD 168
              IK  S +  +L+NGV  +K D I   +   +  G ++P   +  SKF  L     D  D
Sbjct:   113 IIKEISESNKSLNNGVA-VKTDPIGLDNLSMS-DGESDPVYKASSSKFQAL-----DNED 165

Query:   169 QNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQ 228
              ++ + + SI   K   +K   E V  VKD  PRGLIN+GNLCFLNATLQAL+SCSPFVQ
Sbjct:   166 FSSDSSSGSIQRKKN--LKVPTESVPPVKDFTPRGLINAGNLCFLNATLQALLSCSPFVQ 223

Query:   229 LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLK 288
             LLQ+++ +DIPKA  PTL AF  F+S+ D PS  SS + N++V++ GRPF P+MFE VL+
Sbjct:   224 LLQKIQLQDIPKADSPTLAAFSEFISELDVPSS-SSIRNNVTVVEAGRPFRPAMFEGVLR 282

Query:   289 NFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEED-- 346
             NFTPDV N++SGRPRQEDAQEFLSFIMDQMHDELLKL+ +S  +  + ++++S A +D  
Sbjct:   283 NFTPDVLNNMSGRPRQEDAQEFLSFIMDQMHDELLKLKEQSPKVTASKSSVISSANDDGD 342

Query:   347 EWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSE 406
             EWETVGPKNKSAVTRTQSF+PS LS+IFGGQLKSVVKA+G KASATVQP+LLLHLDI+ +
Sbjct:   343 EWETVGPKNKSAVTRTQSFVPSELSEIFGGQLKSVVKAKGTKASATVQPYLLLHLDIHPD 402

Query:   407 AVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQG 466
              V  IEDAL LFSA E+LEGYR S TG  GVV+A KS+KIQ LSKI+ILHLMRFSYGSQG
Sbjct:   403 GVQGIEDALHLFSAQEDLEGYRASVTGKTGVVSASKSIKIQKLSKIMILHLMRFSYGSQG 462

Query:   467 STKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQW 526
             STKL K V+FPL+L L R  LV+ S E  +YELVAT+THHG DPSKGHYT DAR  N QW
Sbjct:   463 STKLRKGVKFPLELNLNRSHLVSLSNESLRYELVATITHHGWDPSKGHYTTDARRKNGQW 522

Query:   527 LHFDDASVTAIGTSKVLHDQAYVLFYKQV 555
             L FDDASVT IGT  VLHDQAYVLFYKQV
Sbjct:   523 LRFDDASVTPIGTKLVLHDQAYVLFYKQV 551
GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA
GO:0004843 "ubiquitin-specific protease activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
DICTYBASE|DDB_G0275021 ubpB "putative ubiquitin carboxyl-terminal hydrolase (UCH)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|G4N4M0 MGG_05996 "Ubiquitin C-terminal hydrolase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000031525 AN5186 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q6DIJ4 usp10 "Ubiquitin carboxyl-terminal hydrolase 10" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|Q2NL57 usp10-a "Ubiquitin carboxyl-terminal hydrolase 10-A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q7ZXR7 usp10-b "Ubiquitin carboxyl-terminal hydrolase 10-B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
RGD|1561965 Usp10 "ubiquitin specific peptidase 10" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q3KR59 Usp10 "Ubiquitin carboxyl-terminal hydrolase 10" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030219-132 usp10 "ubiquitin specific peptidase 10" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FPS3UBP24_ARATH3, ., 4, ., 1, 9, ., 1, 20.57110.96750.9745yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.963
3rd Layer3.4.19.120.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query555
pfam00443313 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol 1e-57
cd02661304 cd02661, Peptidase_C19E, A subfamily of Peptidase 1e-55
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 9e-52
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 3e-43
COG5533415 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos 6e-39
cd02660328 cd02660, Peptidase_C19D, A subfamily of Peptidase 7e-37
cd02657305 cd02657, Peptidase_C19A, A subfamily of Peptidase 3e-30
cd02663300 cd02663, Peptidase_C19G, A subfamily of Peptidase 3e-25
cd02659334 cd02659, peptidase_C19C, A subfamily of Peptidase 4e-21
cd02658311 cd02658, Peptidase_C19B, A subfamily of Peptidase 1e-20
cd02667279 cd02667, Peptidase_C19K, A subfamily of Peptidase 5e-20
cd02668324 cd02668, Peptidase_C19L, A subfamily of Peptidase 2e-18
COG5560823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 5e-15
cd02662240 cd02662, Peptidase_C19F, A subfamily of Peptidase 3e-13
cd02664327 cd02664, Peptidase_C19H, A subfamily of Peptidase 9e-13
pfam13423296 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr 4e-12
COG5560 823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 7e-12
COG5077 1089 COG5077, COG5077, Ubiquitin carboxyl-terminal hydr 2e-11
cd02673245 cd02673, Peptidase_C19Q, A subfamily of Peptidase 6e-08
cd02671332 cd02671, Peptidase_C19O, A subfamily of Peptidase 6e-08
cd02669440 cd02669, Peptidase_C19M, A subfamily of Peptidase 8e-08
COG5207 749 COG5207, UBP14, Isopeptidase T [Posttranslational 6e-07
cd02662240 cd02662, Peptidase_C19F, A subfamily of Peptidase 5e-05
cd02665228 cd02665, Peptidase_C19I, A subfamily of Peptidase 5e-04
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 0.002
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information 
 Score =  194 bits (495), Expect = 1e-57
 Identities = 107/362 (29%), Positives = 147/362 (40%), Gaps = 61/362 (16%)

Query: 201 PRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPT--LTAFVGFVSDFDT 258
           P GL N GN C++N+ LQAL S  P    L +  +  I   G       A         +
Sbjct: 3   PTGLANLGNTCYMNSVLQALFSIPPLRDYLLQNSSELINPLGSLNQLPRALADLFHALQS 62

Query: 259 PSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 318
           P       KN SV       SP  F   L   +P           Q+DA EFL F++DQ+
Sbjct: 63  P-----NSKNASV-------SPKNFLQALGKISPQFSGY-----MQQDAHEFLLFLLDQL 105

Query: 319 HDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 378
           H++L  L+                           K KS          S ++ +F GQL
Sbjct: 106 HEDLNSLK---------------------------KRKSHAAEN----ESLITKLFQGQL 134

Query: 379 KSVVKAQGNKA-SATVQPFLLLHLDIYSEAVHTIEDALRL-FSAPENLEGY--RTSSTGN 434
           +S +K    K  S+T +PF  L L I  E   ++   L   F   E LE           
Sbjct: 135 ESRLKCLKCKKESSTPEPFSDLSLPI--EDSSSVLKLLTGNFLKLEELEKEEKYYCPKCG 192

Query: 435 AGVVTAKKSVKIQTLSKILILHLMRF-SYGSQGSTKLHKSVRFPLQLVLGR--DLLVTPS 491
                A K + I  L  +LI+HL RF  +  +   K+   V FPL+L L    +  +   
Sbjct: 193 GKQ-NAIKKLDISRLPPVLIIHLKRFEDFNRETEKKISDRVEFPLELDLSSYLEEELEGE 251

Query: 492 AEGRKYELVATVTHHGRDPSKGHYTADAR-YFNDQWLHFDDASVTAIGTSKVLHDQAYVL 550
               KYELVA V H G   S GHY A  +    ++W+ FDD  V+ +   +VL   AY+L
Sbjct: 252 EPPTKYELVAVVVHSGSSLSGGHYIAYIKKREKNKWVKFDDEKVSVVTEEEVLRSSAYIL 311

Query: 551 FY 552
           FY
Sbjct: 312 FY 313

Length = 313
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 555
KOG1865 545 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
cd02663300 Peptidase_C19G A subfamily of Peptidase C19. Pepti 100.0
cd02660328 Peptidase_C19D A subfamily of Peptidase C19. Pepti 100.0
cd02657305 Peptidase_C19A A subfamily of Peptidase C19. Pepti 100.0
cd02668324 Peptidase_C19L A subfamily of Peptidase C19. Pepti 100.0
cd02664327 Peptidase_C19H A subfamily of Peptidase C19. Pepti 100.0
cd02658311 Peptidase_C19B A subfamily of Peptidase C19. Pepti 100.0
cd02671332 Peptidase_C19O A subfamily of Peptidase C19. Pepti 100.0
cd02667279 Peptidase_C19K A subfamily of Peptidase C19. Pepti 100.0
cd02661304 Peptidase_C19E A subfamily of Peptidase C19. Pepti 100.0
COG5560823 UBP12 Ubiquitin C-terminal hydrolase [Posttranslat 100.0
cd02669440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 100.0
cd02659334 peptidase_C19C A subfamily of Peptidase C19. Pepti 100.0
COG5533415 UBP5 Ubiquitin C-terminal hydrolase [Posttranslati 100.0
cd02662240 Peptidase_C19F A subfamily of Peptidase C19. Pepti 100.0
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 100.0
cd02674230 Peptidase_C19R A subfamily of peptidase C19. Pepti 100.0
KOG1868653 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
KOG0944763 consensus Ubiquitin-specific protease UBP14 [Postt 100.0
cd02665228 Peptidase_C19I A subfamily of Peptidase C19. Pepti 100.0
cd02666343 Peptidase_C19J A subfamily of Peptidase C19. Pepti 100.0
PF00443269 UCH: Ubiquitin carboxyl-terminal hydrolase; InterP 100.0
cd02673245 Peptidase_C19Q A subfamily of Peptidase C19. Pepti 100.0
KOG1873877 consensus Ubiquitin-specific protease [Posttransla 100.0
cd02257255 Peptidase_C19 Peptidase C19 contains ubiquitinyl h 100.0
KOG1867492 consensus Ubiquitin-specific protease [Posttransla 100.0
KOG1866 944 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
KOG1870842 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
KOG1863 1093 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
COG5207749 UBP14 Isopeptidase T [Posttranslational modificati 100.0
cd02672268 Peptidase_C19P A subfamily of Peptidase C19. Pepti 100.0
KOG4598 1203 consensus Putative ubiquitin-specific protease [Po 100.0
KOG1871420 consensus Ubiquitin-specific protease [Posttransla 100.0
cd02670241 Peptidase_C19N A subfamily of Peptidase C19. Pepti 100.0
PF13423295 UCH_1: Ubiquitin carboxyl-terminal hydrolase 100.0
KOG1864587 consensus Ubiquitin-specific protease [Posttransla 99.98
KOG1872473 consensus Ubiquitin-specific protease [Posttransla 99.96
KOG2026442 consensus Spindle pole body protein - Sad1p [Cytos 99.9
KOG1275 1118 consensus PAB-dependent poly(A) ribonuclease, subu 99.74
KOG3556724 consensus Familial cylindromatosis protein [Genera 99.1
KOG1871420 consensus Ubiquitin-specific protease [Posttransla 98.92
PF15499275 Peptidase_C98: Ubiquitin-specific peptidase-like, 98.5
KOG1864 587 consensus Ubiquitin-specific protease [Posttransla 96.77
KOG1887806 consensus Ubiquitin carboxyl-terminal hydrolase [P 96.03
PF08715320 Viral_protease: Papain like viral protease; InterP 95.12
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 91.84
PF1247833 DUF3697: Ubiquitin-associated protein 2 ; InterPro 85.48
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 80.47
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-61  Score=498.59  Aligned_cols=302  Identities=34%  Similarity=0.529  Sum_probs=263.4

Q ss_pred             CCCCcccccCCCchhHHHHHHHHhCChHHHHHHHhh-hccCCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCCCC
Q 008741          198 DLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQEL-RTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGR  276 (555)
Q Consensus       198 ~~~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~-~~~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~~  276 (555)
                      ...++||.|+|||||+|||||||.++|+|.++|+.. +...+.....|++|+|+..+..-...              .+.
T Consensus       105 ~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~~~--------------~g~  170 (545)
T KOG1865|consen  105 AAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRALHN--------------PGH  170 (545)
T ss_pred             ccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHhcC--------------CCC
Confidence            346799999999999999999999999999999865 44445568899999999988754322              235


Q ss_pred             CCChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCC
Q 008741          277 PFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNK  356 (555)
Q Consensus       277 ~v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (555)
                      ++.|..++..|+.+...|     +.++|+||||||++++|.|+...+....  ..                         
T Consensus       171 pisP~~i~s~L~~I~~~f-----~~grQEDAHEFLr~~vd~mqk~cL~g~~--~~-------------------------  218 (545)
T KOG1865|consen  171 PISPSQILSNLRNISAHF-----GRGRQEDAHEFLRFTVDAMQKACLPGHK--QV-------------------------  218 (545)
T ss_pred             ccChHHHHHhhhhhcccc-----cCCchhhHHHHHHHHHHHHHHhhcCCCc--cC-------------------------
Confidence            999999999999999887     7889999999999999999998752111  00                         


Q ss_pred             cccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeeccccccCHHHHHHhhcCCcCCcccccCCCC-C
Q 008741          357 SAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTG-N  434 (555)
Q Consensus       357 ~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~~~~sLe~~L~~~~~~E~l~g~~c~~c~-~  434 (555)
                          .......++|+++|+|.+++.|+| .|.+++.++|+.++|+|.|.  ...+|++||++|++.|.++|.+.+.|+ |
T Consensus       219 ----~~~sq~ttlv~~iFGG~LrS~vkC~~C~~vS~tyE~~~dltvei~--d~~sl~~AL~qFt~~E~L~gen~Y~C~~C  292 (545)
T KOG1865|consen  219 ----DPRSQDTTLVHQIFGGYLRSQIKCLHCKGVSDTYEPYLDLTLEIQ--DASSLQQALEQFTKPEKLDGENAYHCGRC  292 (545)
T ss_pred             ----CcccccceehhhhhccchhhceecccCCCcccccccccceEEEec--cchhHHHHHHHhhhHHhhCCccccccchh
Confidence                001112357999999999999999 89999999999999999997  678999999999999999985555553 4


Q ss_pred             CcceeEEEEEEeccCCceEEEEEeeeEeCCCCceeccceeeeCceeecCCccccCCCCCCccEEEEEEEEEeeCCCCCce
Q 008741          435 AGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGH  514 (555)
Q Consensus       435 ~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~Y~L~gvI~H~G~s~~sGH  514 (555)
                      +.+++|.|+++|.++|+||+||||||..  ++..||+++|.||+.|||.+|+. .+...+..|.|+|||+|.|.+..+||
T Consensus       293 k~~v~A~K~lti~raPnVLTi~LKRF~~--~~~gKI~K~I~fPE~LDl~PyMS-~~~e~s~~Y~LYavlVH~g~~~~~GH  369 (545)
T KOG1865|consen  293 KQKVPASKQLTIHRAPNVLTLHLKRFSN--GTGGKISKPVSFPETLDLQPYMS-QPNEGSTVYKLYAVLVHLGTSCHSGH  369 (545)
T ss_pred             hhhCcccceeeeecCCceEEEeeehhcc--CcccccccccCCccccccccccc-CCCCCCceEEEEEEEEeccccccCCc
Confidence            7788999999999999999999999997  56789999999999999999987 55677899999999999999999999


Q ss_pred             EEEEEecCCCcEEEEeCCCceeeCcccccCCCcEEEEEEE
Q 008741          515 YTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ  554 (555)
Q Consensus       515 Yva~vr~~~~~W~~fnDs~V~~vs~~~v~~~~aYlLfY~R  554 (555)
                      |+||||..+|+||.+||+.|+.++.+.|+++.||||||.|
T Consensus       370 Y~cYvks~~g~Wy~~DDS~V~~~~~~~VLsq~AYmLfY~R  409 (545)
T KOG1865|consen  370 YFCYVKSQNGQWYKMDDSEVTQSSIESVLSQQAYILFYAR  409 (545)
T ss_pred             eEEEEEcCCCceEEccCceeeeccccceecccceEEEEEe
Confidence            9999999999999999999999999999999999999998

>cd02663 Peptidase_C19G A subfamily of Peptidase C19 Back     alignment and domain information
>cd02660 Peptidase_C19D A subfamily of Peptidase C19 Back     alignment and domain information
>cd02657 Peptidase_C19A A subfamily of Peptidase C19 Back     alignment and domain information
>cd02668 Peptidase_C19L A subfamily of Peptidase C19 Back     alignment and domain information
>cd02664 Peptidase_C19H A subfamily of Peptidase C19 Back     alignment and domain information
>cd02658 Peptidase_C19B A subfamily of Peptidase C19 Back     alignment and domain information
>cd02671 Peptidase_C19O A subfamily of Peptidase C19 Back     alignment and domain information
>cd02667 Peptidase_C19K A subfamily of Peptidase C19 Back     alignment and domain information
>cd02661 Peptidase_C19E A subfamily of Peptidase C19 Back     alignment and domain information
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information
>cd02659 peptidase_C19C A subfamily of Peptidase C19 Back     alignment and domain information
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02662 Peptidase_C19F A subfamily of Peptidase C19 Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02674 Peptidase_C19R A subfamily of peptidase C19 Back     alignment and domain information
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02665 Peptidase_C19I A subfamily of Peptidase C19 Back     alignment and domain information
>cd02666 Peptidase_C19J A subfamily of Peptidase C19 Back     alignment and domain information
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02672 Peptidase_C19P A subfamily of Peptidase C19 Back     alignment and domain information
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02670 Peptidase_C19N A subfamily of Peptidase C19 Back     alignment and domain information
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only] Back     alignment and domain information
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF12478 DUF3697: Ubiquitin-associated protein 2 ; InterPro: IPR022166 This domain family is found in eukaryotes, and is approximately 30 amino acids in length Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query555
2y6e_A367 Ubiquitin Specific Protease 4 Is Inhibited By Its U 2e-25
3v6c_A367 Crystal Structure Of Usp2 In Complex With Mutated U 3e-25
2hd5_A359 Usp2 In Complex With Ubiquitin Length = 359 3e-25
2ibi_A374 Covalent Ubiquitin-Usp2 Complex Length = 374 4e-25
3mtn_A373 Usp21 In Complex With A Ubiquitin-based, Usp21-spec 5e-25
3i3t_A355 Crystal Structure Of Covalent Ubiquitin-usp21 Compl 5e-25
3n3k_A396 The Catalytic Domain Of Usp8 In Complex With A Usp8 6e-25
2y5b_A370 Structure Of Usp21 In Complex With Linear Diubiquit 7e-25
3nhe_A348 High Resolution Structure (1.26a) Of Usp2a In Compl 9e-24
2gfo_A396 Structure Of The Catalytic Domain Of Human Ubiquiti 2e-23
4fip_A476 Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- 2e-20
3m99_A471 Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod 1e-19
3mhh_A476 Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE 1e-19
2f1z_A522 Crystal Structure Of Hausp Length = 522 1e-08
1nbf_A353 Crystal Structure Of A Ubp-Family Deubiquitinating 2e-08
2ayn_A404 Structure Of Usp14, A Proteasome-Associated Deubiqu 4e-08
1nb8_A353 Structure Of The Catalytic Domain Of Usp7 (Hausp) L 9e-08
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 Back     alignment and structure 
Iteration: 1

 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/384 (27%), Positives = 169/384 (44%), Gaps = 68/384 (17%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 261
           GL N GN  F+N+ LQ L + +P     L++    +I +                D P G
Sbjct: 10  GLGNLGNTXFMNSALQCLSNTAPLTDYFLKDEYEAEINR----------------DNPLG 53
Query: 262 -----GSSKKKNISVLDIGRP--FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFI 314
                  +  + I  +  GR    +P MF+  +  F P      SG  +Q+D+QE L+F+
Sbjct: 54  MKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQVGRFAP----QFSGY-QQQDSQELLAFL 108
Query: 315 MDQMHDELLKLQG----ESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSAL 370
           +D +H++L +++     E    NG   A+V+   ++ WE    +N S +           
Sbjct: 109 LDGLHEDLNRVKKKPYLELKDANGRPDAVVA---KEAWENHRLRNDSVIV---------- 155
Query: 371 SDIFGGQLKS-VVKAQGNKASATVQPFLLLHLDIYSEAVHTIE----------------- 412
            D F G  KS +V  +  K S T  PF  L L +  +    +E                 
Sbjct: 156 -DTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALR 214
Query: 413 DALRLFSAPENLEGYRTSSTGNAGV-VTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLH 471
           D + LF+  E L  +      N      A K   + +L KIL++HL RFSY      KL 
Sbjct: 215 DCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLD 274
Query: 472 KSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADAR-YFNDQWLHFD 530
             V FP++ +   + +   SA    Y+L+A   H+G     GHYTA A+   N +W +FD
Sbjct: 275 TVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGA-MGVGHYTAYAKNKLNGKWYYFD 333
Query: 531 DASVTAIGTSKVLHDQAYVLFYKQ 554
           D++V+     +++   AYVLFY++
Sbjct: 334 DSNVSLASEDQIVTKAAYVLFYQR 357
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 Back     alignment and structure
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 Back     alignment and structure
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 Back     alignment and structure
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 Back     alignment and structure
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 Back     alignment and structure
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 Back     alignment and structure
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 Back     alignment and structure
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 Back     alignment and structure
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 Back     alignment and structure
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 Back     alignment and structure
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 Back     alignment and structure
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 Back     alignment and structure
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522 Back     alignment and structure
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353 Back     alignment and structure
>pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated Deubiquitinating Enzyme Length = 404 Back     alignment and structure
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query555
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 2e-72
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 2e-69
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 3e-69
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 7e-67
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 6e-62
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 1e-59
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 3e-46
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 4e-43
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 1e-27
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 1e-12
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 2e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-11
2vhf_A374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 6e-05
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 Back     alignment and structure
 Score =  234 bits (598), Expect = 2e-72
 Identities = 100/368 (27%), Positives = 147/368 (39%), Gaps = 35/368 (9%)

Query: 202 RGLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPT--LTAFVGFVSDFDT 258
            GL N GN CFLNA LQ L S  P     L+    +++P  G       AF   +     
Sbjct: 4   VGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWH 63

Query: 259 PSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 318
           P    +              +P+ F AV + + P           Q+DAQEFL  +M+++
Sbjct: 64  PDSCEA-------------VNPTRFRAVFQKYVPSFSGY-----SQQDAQEFLKLLMERL 105

Query: 319 HDELLKLQ--GESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFL---PSALSDI 373
           H E+ +          NG   +          E     +  A    + +L    S + D+
Sbjct: 106 HLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDL 165

Query: 374 FGGQLKSVVK-AQGNKASATVQPFLLLHLDI----YSEAVHTIEDALRLFSAPENLEGYR 428
           F GQLKS +K       S T + F  L L I    ++    ++ D   LF+  E LE   
Sbjct: 166 FVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESEN 225

Query: 429 TSSTGNAGV-VTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLL 487
                       + K + +Q   +IL+LHL RFS       K    V FPLQ  L     
Sbjct: 226 APVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQ-RLSLGDF 284

Query: 488 VTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQA 547
            +  A    Y+L A   H G     GHYTA  R     W  ++D+ V+ +  ++V   + 
Sbjct: 285 ASDKAGSPVYQLYALCNHSG-SVHYGHYTALCR-CQTGWHVYNDSRVSPVSENQVASSEG 342

Query: 548 YVLFYKQV 555
           YVLFY+ +
Sbjct: 343 YVLFYQLM 350
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Length = 374 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query555
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 100.0
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 100.0
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 100.0
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 100.0
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 100.0
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 100.0
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 100.0
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 100.0
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 100.0
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 100.0
2vhf_A374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 99.96
3mp2_A211 Non-structural protein 3; papain-like protease, TG 96.76
2fe8_A315 PP1AB, ORF1AB, replicase polyprotein 1AB; protease 95.68
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=3.9e-62  Score=511.25  Aligned_cols=322  Identities=29%  Similarity=0.475  Sum_probs=267.0

Q ss_pred             CCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhcc-CC-----CCCCCcHHHHHHHHHHHhcCCCCCCCccccccccC
Q 008741          200 LPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR-DI-----PKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLD  273 (555)
Q Consensus       200 ~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~-~~-----~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~  273 (555)
                      +.+||.|+||||||||+||||+++|+|+++++..... ..     .....++.++|+.|+..||...             
T Consensus         7 g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~-------------   73 (367)
T 2y6e_A            7 GLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGR-------------   73 (367)
T ss_dssp             TCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSS-------------
T ss_pred             CCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCC-------------
Confidence            5799999999999999999999999999999864311 11     1234578999999999998543             


Q ss_pred             CCCCCChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccC-CCCccccccchhhhhhhhhC
Q 008741          274 IGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSI-NGANTALVSLAEEDEWETVG  352 (555)
Q Consensus       274 ~~~~v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  352 (555)
                       ...++|..|...++...+.|     .++.||||||||.+|||.||+++.+....+... ...........+.+.|..+.
T Consensus        74 -~~~i~P~~~~~~l~~~~~~f-----~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~  147 (367)
T 2y6e_A           74 -DAHVAPRMFKTQVGRFAPQF-----SGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHR  147 (367)
T ss_dssp             -CSEECCHHHHHHHHHHCGGG-----CSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHH
T ss_pred             -CCCcCHHHHHHHHHHhhhhc-----CCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHH
Confidence             26799999999999998887     788999999999999999999986654432211 11111122234456676654


Q ss_pred             CCCCcccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeeccc-----------------cccCHHHH
Q 008741          353 PKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSE-----------------AVHTIEDA  414 (555)
Q Consensus       353 ~~~~~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~-----------------~~~sLe~~  414 (555)
                      ..+.           ++|.++|+|++.+.++| .|++.+.+.|+|++|+|+||..                 ...+|++|
T Consensus       148 ~~~~-----------s~i~~~F~G~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~  216 (367)
T 2y6e_A          148 LRND-----------SVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDC  216 (367)
T ss_dssp             HHCC-----------SHHHHHHCEEEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHH
T ss_pred             HhcC-----------CccccccCcEEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHH
Confidence            3332           46999999999999999 8999999999999999999853                 24699999


Q ss_pred             HHhhcCCcCCcc---cccCCCCCCcceeEEEEEEeccCCceEEEEEeeeEeCCCCceeccceeeeCc-eeecCCccccCC
Q 008741          415 LRLFSAPENLEG---YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPL-QLVLGRDLLVTP  490 (555)
Q Consensus       415 L~~~~~~E~l~g---~~c~~c~~~~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~~~~~Ki~~~V~fp~-~Ldl~~~~~~~~  490 (555)
                      |+.|+.+|.+++   +.|+.|  +..+.+.|+..|.++|+||+|||+||.++.....|+.+.|.||. .|||.+|+... 
T Consensus       217 L~~f~~~E~l~~~~~~~C~~C--~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~-  293 (367)
T 2y6e_A          217 IELFTTMETLGEHDPWYCPNC--KKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNL-  293 (367)
T ss_dssp             HHHHTSCEECCC-CCEEETTT--TEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCS-
T ss_pred             HHHhcccccCCCCCCccCCCC--CCCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCC-
Confidence            999999999987   567766  45678999999999999999999999999777899999999997 69999998643 


Q ss_pred             CCCCccEEEEEEEEEeeCCCCCceEEEEEecC-CCcEEEEeCCCceeeCcccccCCCcEEEEEEEC
Q 008741          491 SAEGRKYELVATVTHHGRDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV  555 (555)
Q Consensus       491 ~~~~~~Y~L~gvI~H~G~s~~sGHYva~vr~~-~~~W~~fnDs~V~~vs~~~v~~~~aYlLfY~RV  555 (555)
                      ......|+|+|||+|.|. .++|||+||+|.. +++||+|||+.|+++++++|....||||||+|.
T Consensus       294 ~~~~~~Y~L~avv~H~G~-~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~  358 (367)
T 2y6e_A          294 SARPYVYDLIAVSNHYGA-MGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRR  358 (367)
T ss_dssp             SSCCCEEEEEEEEEEECS-SSSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEEC
T ss_pred             CCCCceEEEEEEeecCCC-CCCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEc
Confidence            234679999999999998 8999999999996 789999999999999999999999999999985
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Back     alignment and structure
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Back     alignment and structure
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus} Back     alignment and structure
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 555
d2gfoa1348 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h 2e-46
d2hd5a1336 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy 7e-46
d2ayna1383 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy 3e-40
d1vjva_397 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 2e-33
d1nbfa_347 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 8e-25
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  164 bits (415), Expect = 2e-46
 Identities = 95/372 (25%), Positives = 149/372 (40%), Gaps = 38/372 (10%)

Query: 196 VKDLLP---------RGLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPT 245
           +++L P          GL N GN C++N+ LQ L +         +     DI ++    
Sbjct: 1   IRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRS--NL 58

Query: 246 LTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQE 305
           L        +F          +        R  SP  F+  +                Q+
Sbjct: 59  LGHKGEVAEEFGIIMKALWTGQY-------RYISPKDFKITIGKINDQFAGY-----SQQ 106

Query: 306 DAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSF 365
           D+QE L F+MD +H++L K                   E ++        + A  + +  
Sbjct: 107 DSQELLLFLMDGLHEDLNKADNRKRYKE----------ENNDHLDDFKAAEHAWQKHKQL 156

Query: 366 LPSALSDIFGGQLKSVVKAQGNKASAT-VQPFLLLHLDIYSEAVHTIEDALRLFSAPENL 424
             S +  +F GQ KS V+       +   + F+ L L + S +  T++D LRLFS  E L
Sbjct: 157 NESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKL 216

Query: 425 EGY-RTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLG 483
               R   +       + K ++I  L  +L++HL RFSY  +   KL  SV FPL+ +  
Sbjct: 217 TDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDL 276

Query: 484 RDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSKV 542
              ++ P    +KY L +   H+G     GHYTA  +     +W  FDD  V+ I  S V
Sbjct: 277 SQYVIGPKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV 335

Query: 543 LHDQAYVLFYKQ 554
               AY+LFY  
Sbjct: 336 KSSAAYILFYTS 347
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 Back     information, alignment and structure
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 Back     information, alignment and structure
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query555
d1nbfa_347 Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU 100.0
d2ayna1383 Ubiquitin carboxyl-terminal hydrolase 14 {Human (H 100.0
d2gfoa1348 Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho 100.0
d2hd5a1336 Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum 100.0
d1vjva_397 Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y 100.0
d1qmya_156 FMDV leader protease {Foot-and-mouth disease virus 82.47
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-56  Score=458.49  Aligned_cols=294  Identities=23%  Similarity=0.365  Sum_probs=251.5

Q ss_pred             cCCCCcccccCCCchhHHHHHHHHhCChHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHhcCCCCCCCccccccccCCCC
Q 008741          197 KDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGR  276 (555)
Q Consensus       197 ~~~~~~GL~NlGNTCYlNSvLQ~L~~~p~fr~~L~~~~~~~~~~~~~~~~~~l~~Ll~~l~~~~~~~~~~~~~~~~~~~~  276 (555)
                      +.++.+||.|+||||||||+||+|+++|+||++++..... ......++.++|+.++..|+...               .
T Consensus         2 ~~~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~-~~~~~~~~~~~l~~lf~~l~~~~---------------~   65 (347)
T d1nbfa_           2 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE-GDDSSKSVPLALQRVFYELQHSD---------------K   65 (347)
T ss_dssp             CSSSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCT-TCCTTTCHHHHHHHHHHHHHHCS---------------S
T ss_pred             CCCCCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCcc-CCcccchHHHHHHHHHHHHhcCC---------------C
Confidence            3456799999999999999999999999999999875432 23345678999999999886432               5


Q ss_pred             CCChHHHHHHHHhcCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhhcCCCccCCCCccccccchhhhhhhhhCCCCC
Q 008741          277 PFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNK  356 (555)
Q Consensus       277 ~v~p~~~~~~l~~~~p~~~~~~~~~~~QqDA~EfL~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (555)
                      ++.|..+...+..  +     .+..+.||||+||+..||+.|++++....                              
T Consensus        66 ~~~~~~~~~~~~~--~-----~~~~~~qqDa~Ef~~~ll~~l~~~~~~~~------------------------------  108 (347)
T d1nbfa_          66 PVGTKKLTKSFGW--E-----TLDSFMQHDVQELCRVLLDNVENKMKGTC------------------------------  108 (347)
T ss_dssp             CBCCHHHHHHTTC--C-----GGGGGSCBCHHHHHHHHHHHHHHHHTTST------------------------------
T ss_pred             CcChHHHHHhhch--h-----hcchHHHHHHHHHHHHHHHHHHHHHhhcc------------------------------
Confidence            6778777665531  1     23667999999999999999999874322                              


Q ss_pred             cccccccccCCcccccccccEEeEEEEe-cCCccceeeecceeeeeeeccccccCHHHHHHhhcCCcCCcccccCCCCCC
Q 008741          357 SAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA  435 (555)
Q Consensus       357 ~~~~~~~~~~~s~I~~lF~G~l~s~i~C-~c~~~s~~~e~f~~LsL~I~~~~~~sLe~~L~~~~~~E~l~g~~c~~c~~~  435 (555)
                               ..++|.++|.|++.+.+.| .|++.+.+.++|+.|+|+++.  ..+++++|..++..|.+++..+.+|.|+
T Consensus       109 ---------~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~L~i~~--~~~~~~~l~~~~~~e~l~~~~~~~~~~~  177 (347)
T d1nbfa_         109 ---------VEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKG--KKNIFESFVDYVAVEQLDGDNKYDAGEH  177 (347)
T ss_dssp             ---------TTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESSEEEECTT--CCBHHHHHHHHTCCEEECGGGCEECSTT
T ss_pred             ---------ccccccceeceEEEEeEEeCCccceeeeecccccccccccc--ccchhhhHHhhcchheeccccccccccC
Confidence                     1235899999999999999 799999999999999999974  4689999999999999998887777778


Q ss_pred             cceeEEEEEEeccCCceEEEEEeeeEeCC--CCceeccceeeeCceeecCCccccCCCCCCccEEEEEEEEEeeCCCCCc
Q 008741          436 GVVTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKG  513 (555)
Q Consensus       436 ~~~~a~k~~~i~~lP~vLiI~L~Rf~~~~--~~~~Ki~~~V~fp~~Ldl~~~~~~~~~~~~~~Y~L~gvI~H~G~s~~sG  513 (555)
                      +...+.++..|.++|++|+|||+||.++.  ....|++..|.||..|||.+|+..........|+|+|||+|.|. .++|
T Consensus       178 ~~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~~vI~H~G~-~~~G  256 (347)
T d1nbfa_         178 GLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NHGG  256 (347)
T ss_dssp             CEECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEEEE-TTEE
T ss_pred             cceeccEEEEEEecCChheEeeeeeeeccccCcccccCceEeeeeeeccccccccccccCccceeeEEEEEecCC-CCCC
Confidence            88899999999999999999999999873  45679999999999999999998877778899999999999998 6999


Q ss_pred             eEEEEEecC-CCcEEEEeCCCceeeCcccccC---------------CCcEEEEEEEC
Q 008741          514 HYTADARYF-NDQWLHFDDASVTAIGTSKVLH---------------DQAYVLFYKQV  555 (555)
Q Consensus       514 HYva~vr~~-~~~W~~fnDs~V~~vs~~~v~~---------------~~aYlLfY~RV  555 (555)
                      ||+||+|.. +++||+|||+.|+++++++|+.               .+||||||+|.
T Consensus       257 HY~~~~~~~~~~~W~~fnD~~V~~v~~~ev~~~~~g~~~~~~~~~~~~~aYiLfY~r~  314 (347)
T d1nbfa_         257 HYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRE  314 (347)
T ss_dssp             EEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCCCSCCSTTTTEEEEEEEEEEG
T ss_pred             EEEEeeecCCCCEEEEEECCceEECCHHHHHHhhcCCCccccccCCCCCEEEEEEEec
Confidence            999999975 6789999999999999999973               26999999984
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease virus [TaxId: 12110]} Back     information, alignment and structure