Citrus Sinensis ID: 008783

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550---
MCNPKPSSPSSFFSPRKPHYTNLNKTVDLHTDDPEELHRRPTPSEALEEMKAIGKISGPTAMTGLILYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWKLLGITLQRTVLLLLSTSLPISFMWLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYCSAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLLSSFVYFSGVHKDSWVSPSMDCVRGWSSLLALAIPNCISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCRTDWMVQAERAKELTQTNATCLLILPVLSKPEDTIVTKQPNIKDINLEAILSINDDELVKSASLETDPLISTAAPSAT
cccccccccccccccccccccccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccHHHHHEEHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHccccHHHHHHcccccccccccccccccc
ccccccccccccccccccccccccccHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHcccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHcHHHccccHHHHHEEEEHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHccccccccccccccccHHHcccccccc
mcnpkpsspssffsprkphytnlnktvdlhtddpeelhrrptpsEALEEMKAIgkisgptamTGLILYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGlamgmepicgqayGAKQWKLLGITLQRTVLLLLSTSLPISFMWLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSqgitlpltYCSAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLLSSFVYFsgvhkdswvspsmdcvRGWSSLLALAIPNCISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYvfpsslslgvstrvgnelganrpskARISMIVSLFCAVALGLMAVLFTTLMRhkwgrfftndAEILELTAIALPiiglcelgncpqttgcgvlrgsarpktgasinlgsfylvgMPVAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCRTDWMVQAERAKELtqtnatcllilpvlskpedtivtkqpnikdinLEAILSInddelvksasletdplistaapsat
mcnpkpsspssffsprkphYTNLNKtvdlhtddpeelhrrptpseALEEMKAIGKISGPTAMTGLILYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWKLLGITLQRTVLLLLSTSLPISFMWLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYCSAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLLSSFVYFSGVHKDSWVSPSMDCVRGWSSLLALAIPNCISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGnelganrpskaRISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCRTDWMVQAERAKEltqtnatcllilpvlskpedtivtkqpnikdinLEAILSINDDELVKSAsletdplistaapsat
MCNpkpsspssffsprkpHYTNLNKTVDLHTDDPEELHRRPTPSEALEEMKAIGKISGPTAMTGLILYSRAMISMlflgylgelelaggslsigFANITGYSVLSGLAMGMEPICGQAYGAKQWKLLGITLQRTVLLLLSTSLPISFMWLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYCSAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTnlnlflllssfVYFSGVHKDSWVSPSMDCVRGWSSLLALAIPNCISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCRTDWMVQAERAKELTQTNATCLLILPVLSKPEDTIVTKQPNIKDINLEAILSINDDELVKSASLETDPLISTAAPSAT
******************************************************KISGPTAMTGLILYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWKLLGITLQRTVLLLLSTSLPISFMWLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYCSAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLLSSFVYFSGVHKDSWVSPSMDCVRGWSSLLALAIPNCISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCRTDWMVQAERAKELTQTNATCLLILPVLSKPEDTIVTKQPNIKDINLEAILSINDD**********************
***************************************RPTPSEALEEMKAIGKISGPTAMTGLILYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWKLLGITLQRTVLLLLSTSLPISFMWLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYCSAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLLSSFVYFSGVHKDSWVSPSMDCVRGWSSLLALAIPNCISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCRTDWMVQAERA*******************************************************************
*************SPRKPHYTNLNKTVDLHT**************ALEEMKAIGKISGPTAMTGLILYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWKLLGITLQRTVLLLLSTSLPISFMWLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYCSAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLLSSFVYFSGVHKDSWVSPSMDCVRGWSSLLALAIPNCISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCRTDWMVQAERAKELTQTNATCLLILPVLSKPEDTIVTKQPNIKDINLEAILSINDDELVKSASLETDPLI********
*************************************HRRPTPSEALEEMKAIGKISGPTAMTGLILYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWKLLGITLQRTVLLLLSTSLPISFMWLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYCSAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLLSSFVYFSGVHKDSWVSPSMDCVRGWSSLLALAIPNCISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCRTDWMVQAERAKELTQT***************************IN*EA**SIN************************
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MCNPKPSSPSSFFSPRKPHYTNLNKTVDLHTDDPEELHRRPTPSEALEEMKAIGKISGPTAMTGLILYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWKLLGITLQRTVLLLLSTSLPISFMWLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYCSAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLLSSFVYFSGVHKDSWVSPSMDCVRGWSSLLALAIPNCISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCRTDWMVQAERAKELTQTNATCLLILPVLSKPEDTIVTKQPNIKDINLEAILSINDDELVKSASLETDPLISTAAPSAT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query553 2.2.26 [Sep-21-2011]
Q5RFD2570 Multidrug and toxin extru yes no 0.886 0.859 0.315 9e-65
Q9SIA5476 MATE efflux family protei no no 0.793 0.922 0.335 5e-63
Q8K0H1567 Multidrug and toxin extru yes no 0.793 0.774 0.322 2e-62
Q5I0E9566 Multidrug and toxin extru no no 0.779 0.761 0.328 5e-62
Q9SIA4476 MATE efflux family protei no no 0.788 0.915 0.342 8e-62
Q96FL8570 Multidrug and toxin extru yes no 0.886 0.859 0.315 9e-62
Q8GXM8476 MATE efflux family protei no no 0.788 0.915 0.324 1e-60
Q3V050573 Multidrug and toxin extru no no 0.840 0.811 0.309 1e-60
Q8RWF5483 MATE efflux family protei no no 0.801 0.917 0.316 2e-59
Q9SIA3476 MATE efflux family protei no no 0.788 0.915 0.319 2e-59
>sp|Q5RFD2|S47A1_PONAB Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1 Back     alignment and function desciption
 Score =  248 bits (633), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 160/507 (31%), Positives = 270/507 (53%), Gaps = 17/507 (3%)

Query: 48  EEMKAIGKISGPTAMTGLILYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGL 107
           EE++A+  ++GP  +  L+++  + IS +F G+LG+LEL   +L+I   N+TG SV  GL
Sbjct: 33  EELRALLVLAGPAFLVQLMVFLISFISSVFCGHLGKLELDAVTLAIAVINVTGVSVGFGL 92

Query: 108 AMGMEPICGQAYGAKQWKLLGITLQRTVLLLLSTSLPISFMWLNMKRILLWCGQDDEISS 167
           +   + +  Q YG++  K +G+ LQR+ L+LL    P   ++LN + ILL   QD ++S 
Sbjct: 93  SSACDTLISQTYGSQNLKHVGVILQRSALILLLCCFPCWALFLNTQHILLLFRQDPDVSR 152

Query: 168 VAQTFILFAIPDLFFLSLLHPLRV-YLRSQGITLPLTYCSAISVLLHVPLNFLLVVHFKM 226
           + QT++   IP L   + L+ L+V YL +QGI LP       + L++   N+L +    +
Sbjct: 153 LTQTYVTIFIPALP-ATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLHL 211

Query: 227 GIAGVAIAMVWTNLNLFLLLSSFVYFSGVHKDSWVSPSMDCVRGWSSLLALAIPNCISVC 286
           G  G A+A + +   L LLL  ++    +H+ +W   S++C++ W+S L LA+P+ + +C
Sbjct: 212 GAIGSALANLISQYTLALLLFFYILGKKLHQATWGGWSLECLQDWASFLHLAVPSMLMLC 271

Query: 287 LEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRP 346
           +EWW YE+   + G+L      + +  I+ ++  ++Y+ P+  S+  S RVGN LGA   
Sbjct: 272 MEWWAYEVGSFLSGIL--GMVELGAQSIVYELAIIVYMVPAGFSVAASVRVGNALGAGDM 329

Query: 347 SKARISMIVSLFCAVALGLMAVLFTTLM---RHKWGRFFTNDAEILELTAIALPIIGLCE 403
            +AR S  VSL   V   L AV F+ L+   +   G  FT D +I+ L A  +PI  +  
Sbjct: 330 EQARKSSTVSLLITV---LFAVAFSVLLLSCKDHVGYIFTTDRDIINLVAQVVPIYAVSH 386

Query: 404 LGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVAILMGFVAKMGFPGLWLGLLAAQ 463
           L      T  GVLRGS   K GA +N   +Y+VG+P+ I + F  K+G  GLW G++   
Sbjct: 387 LFEALACTSGGVLRGSGNQKVGAIVNTIGYYVVGLPIGIALMFATKLGVMGLWSGIIICT 446

Query: 464 ASCALVMLHVLCRTDWMVQAERAKELTQTNATCLLILPVLSKPEDTIVTKQPNIKDINLE 523
              A+  L  + + +W    ++A+         +      + P+D +    P     NLE
Sbjct: 447 VFQAVCFLGFIIQLNWKKACQQAQVHANLKVNNVPRSGNSALPQDPLHPGCPE----NLE 502

Query: 524 AILSINDDELVKSASLETDPLISTAAP 550
            IL+   +++ K+   ++D  +    P
Sbjct: 503 GILT---NDVGKTGETQSDQQMRQEEP 526
Solute transporter for tetraethylammonium (TEA), 1-methyl-4-phenylpyridinium (MPP), cimetidine, N-methylnicotinamide (NMN), metformin, creatinine, guanidine, procainamide, topotecan, estrone sulfate, acyclovir, ganciclovir and also the zwitterionic cephalosporin, cephalexin and cephradin. Seems to also play a role in the uptake of oxaliplatin (a new platinum anticancer agent). Able to transport paraquat (PQ or N,N-dimethyl-4-4'-bipiridinium); a widely used herbicid. Responsible for the secretion of cationic drugs across the brush border membranes.
Pongo abelii (taxid: 9601)
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q8K0H1|S47A1_MOUSE Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2 Back     alignment and function description
>sp|Q5I0E9|S47A1_RAT Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q96FL8|S47A1_HUMAN Multidrug and toxin extrusion protein 1 OS=Homo sapiens GN=SLC47A1 PE=1 SV=1 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q3V050|S47A2_MOUSE Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query553
255537876528 multidrug resistance pump, putative [Ric 0.938 0.982 0.840 0.0
225458978527 PREDICTED: multidrug and toxin extrusion 0.936 0.982 0.823 0.0
302142124576 unnamed protein product [Vitis vinifera] 0.936 0.899 0.823 0.0
224063333528 predicted protein [Populus trichocarpa] 0.940 0.984 0.835 0.0
357490223560 Multidrug and toxin extrusion protein [M 0.962 0.95 0.722 0.0
356518390548 PREDICTED: multidrug and toxin extrusion 0.967 0.976 0.743 0.0
356510070537 PREDICTED: multidrug and toxin extrusion 0.893 0.919 0.801 0.0
356498882527 PREDICTED: MATE efflux family protein DT 0.895 0.939 0.764 0.0
18406257532 MATE efflux family protein [Arabidopsis 0.909 0.945 0.733 0.0
51970554532 putative protein [Arabidopsis thaliana] 0.909 0.945 0.732 0.0
>gi|255537876|ref|XP_002510003.1| multidrug resistance pump, putative [Ricinus communis] gi|223550704|gb|EEF52190.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  887 bits (2293), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/528 (84%), Positives = 479/528 (90%), Gaps = 9/528 (1%)

Query: 27  VDLHTDD-PEELHRRPTPSEALEEMKAIGKISGPTAMTGLILYSRAMISMLFLGYLGELE 85
           +DL+  D  EELHR PTPSE LEE+KAIGKISGPTA+TGLILYSRAMISMLFLGYLGELE
Sbjct: 1   MDLYAHDVEEELHRWPTPSEVLEEIKAIGKISGPTAITGLILYSRAMISMLFLGYLGELE 60

Query: 86  LAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWKLLGITLQRTVLLLLSTSLPI 145
           LAGGSLSIGFANITGYSV+SGLAMGMEPICGQAYGAKQ K LG+TLQRTVLLLLSTS+PI
Sbjct: 61  LAGGSLSIGFANITGYSVISGLAMGMEPICGQAYGAKQMKFLGLTLQRTVLLLLSTSVPI 120

Query: 146 SFMWLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYC 205
           SFMWLNMKRILLWCGQD EISS A TFILFAIPDLFFLSLLHPLRVYLR+Q ITLPLTYC
Sbjct: 121 SFMWLNMKRILLWCGQDQEISSTAHTFILFAIPDLFFLSLLHPLRVYLRTQSITLPLTYC 180

Query: 206 SAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLLLSSFVYFSGVHKDSWVSPSM 265
           SAISVLLHVPLNFLLVVHFK+G+AGVAIAMVWTNLNLFL L SF+YFSG++KDSWV+PSM
Sbjct: 181 SAISVLLHVPLNFLLVVHFKLGVAGVAIAMVWTNLNLFLFLISFIYFSGIYKDSWVAPSM 240

Query: 266 DCVRGWSSLLALAIPNCISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVF 325
           DC+RGWSSLLALA+P C+SVCLEWWWYE MIM+CGLL+NPKA IASMGILIQ TSL+YVF
Sbjct: 241 DCLRGWSSLLALAVPTCVSVCLEWWWYEFMIMLCGLLVNPKATIASMGILIQTTSLVYVF 300

Query: 326 PSSLSLGVSTRVGNELGANRPSKARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFTND 385
           PSSLSLGVSTRVGNELGANRP+KARISMIVSL CAV LGL+A+LFTTLMRH+WGRFFTND
Sbjct: 301 PSSLSLGVSTRVGNELGANRPAKARISMIVSLSCAVGLGLLAMLFTTLMRHQWGRFFTND 360

Query: 386 AEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVAILMG 445
            EILELTA+ALPI+GLCELGNCPQT GCGVLRGSARP  GA+INLGSFYLVGMPV +LMG
Sbjct: 361 VEILELTAVALPIVGLCELGNCPQTAGCGVLRGSARPTIGANINLGSFYLVGMPVGMLMG 420

Query: 446 FVAKMGFPGLWLGLLAAQASCALVMLHVLCRTDWMVQAERAKELTQTNAT-CLLILPVLS 504
           FVAKMGF GLWLGLLAAQASCA++ML+VLCRTDW VQAERA++LTQT+AT    ILPV S
Sbjct: 421 FVAKMGFAGLWLGLLAAQASCAILMLYVLCRTDWSVQAERARKLTQTSATNSASILPVSS 480

Query: 505 --KPE---DTIVTKQPNIKDINLEAILSINDDELVKSASLETDPLIST 547
             KPE   +  V K  N K  NLE ILSI DDELVKS SLETDPLIS 
Sbjct: 481 ATKPEGITNNTVMKIKN-KKANLEEILSI-DDELVKSTSLETDPLISN 526

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225458978|ref|XP_002283609.1| PREDICTED: multidrug and toxin extrusion protein 1 [Vitis vinifera] gi|147802486|emb|CAN77415.1| hypothetical protein VITISV_000475 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302142124|emb|CBI19327.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224063333|ref|XP_002301101.1| predicted protein [Populus trichocarpa] gi|222842827|gb|EEE80374.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357490223|ref|XP_003615399.1| Multidrug and toxin extrusion protein [Medicago truncatula] gi|355516734|gb|AES98357.1| Multidrug and toxin extrusion protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356518390|ref|XP_003527862.1| PREDICTED: multidrug and toxin extrusion protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356510070|ref|XP_003523763.1| PREDICTED: multidrug and toxin extrusion protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356498882|ref|XP_003518276.1| PREDICTED: MATE efflux family protein DTX1-like [Glycine max] Back     alignment and taxonomy information
>gi|18406257|ref|NP_564731.1| MATE efflux family protein [Arabidopsis thaliana] gi|8979940|gb|AAF82254.1|AC008051_5 Identical to gene ZF14 from Arabidopsis thaliana gb|AB028198 and is a member of an uncharacterized integral membrane protein UPF PF|01554 family [Arabidopsis thaliana] gi|6520161|dbj|BAA87939.1| ZF14 [Arabidopsis thaliana] gi|332195416|gb|AEE33537.1| MATE efflux family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|51970554|dbj|BAD43969.1| putative protein [Arabidopsis thaliana] gi|51970794|dbj|BAD44089.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query553
TAIR|locus:2016615532 ZF14 "AT1G58340" [Arabidopsis 0.884 0.919 0.688 3.8e-181
TAIR|locus:2127193502 AT4G23030 "AT4G23030" [Arabido 0.830 0.914 0.585 3.2e-145
TAIR|locus:2119941532 ADS1 "AT4G29140" [Arabidopsis 0.813 0.845 0.522 1.9e-131
TAIR|locus:2183169508 AT5G19700 "AT5G19700" [Arabido 0.887 0.966 0.504 2.2e-130
TAIR|locus:2173098505 AT5G52050 [Arabidopsis thalian 0.811 0.889 0.519 3e-124
TAIR|locus:2064138486 AT2G38510 "AT2G38510" [Arabido 0.808 0.919 0.479 3.1e-115
TAIR|locus:2013006510 AT1G71870 "AT1G71870" [Arabido 0.414 0.449 0.530 3.4e-111
TAIR|locus:2155179502 AT5G49130 "AT5G49130" [Arabido 0.849 0.936 0.435 3.6e-105
TAIR|locus:2132619491 AT4G22790 "AT4G22790" [Arabido 0.837 0.942 0.344 2.3e-71
TAIR|locus:2156737486 AT5G52450 "AT5G52450" [Arabido 0.817 0.930 0.318 1.4e-64
TAIR|locus:2016615 ZF14 "AT1G58340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1758 (623.9 bits), Expect = 3.8e-181, P = 3.8e-181
 Identities = 342/497 (68%), Positives = 396/497 (79%)

Query:    19 HYTNLNKTVDLHTDDPEELHRRPTPSEALEEMKAIGKISGPTAMTGLILYSRAMISMXXX 78
             HY+    T      D  +L R P+  E LEE+KAIGKISGPTAMTGL++YSRAMISM   
Sbjct:    34 HYSEFRDT------DSLDLKRWPSFLEGLEEVKAIGKISGPTAMTGLLMYSRAMISMLFL 87

Query:    79 XXXXXXXXXXXXXXXXFANITGYSVLSGLAMGMEPICGQAYGAKQWKLLGITLQRTVLLL 138
                             FANITGYSV+SGL+MGMEPICGQAYGAKQ KLLG+TLQRTVLLL
Sbjct:    88 GYLGELELAGGSLSIGFANITGYSVISGLSMGMEPICGQAYGAKQMKLLGLTLQRTVLLL 147

Query:   139 LSTSLPISFMWLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGI 198
             LS S+PISF WLNM+RILLWCGQD+EISSVAQ F+LFAIPDLF LSLLHPLR+YLR+Q I
Sbjct:   148 LSCSVPISFSWLNMRRILLWCGQDEEISSVAQQFLLFAIPDLFLLSLLHPLRIYLRTQNI 207

Query:   199 TLPLTYCSAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTXXXXXXXXXXXVYFSGVHKD 258
             TLP+TY +A+SVLLHVPLN+LLVV  +MG+AGVAIAMV T           VYF+ VH D
Sbjct:   208 TLPVTYSTAVSVLLHVPLNYLLVVKLEMGVAGVAIAMVLTNLNLVVLLSSFVYFTSVHSD 267

Query:   259 SWVSPSMDCVRGWSSLLALAIPNCISVCLEWWWYELMIMICGLLINPKAAIASMGILIQI 318
             +WV  ++D ++GWS+LL+LAIP C+SVCLEWWWYE MI++CGLL NP+A +ASMGILIQ 
Sbjct:   268 TWVPITIDSLKGWSALLSLAIPTCVSVCLEWWWYEFMIILCGLLANPRATVASMGILIQT 327

Query:   319 TSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFCAVALGLMAVLFTTLMRHKW 378
             T+L+YVFPSSLSLGVSTR+ NELGA RP+KAR+SMI+SLFCA+ALGLMA++F  L+RH W
Sbjct:   328 TALVYVFPSSLSLGVSTRISNELGAKRPAKARVSMIISLFCAIALGLMAMVFAVLVRHHW 387

Query:   379 GRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGM 438
             GR FT DAEIL+LT+IALPI+GLCELGNCPQTTGCGVLRG ARP  GA+INLGSFY VGM
Sbjct:   388 GRLFTTDAEILQLTSIALPIVGLCELGNCPQTTGCGVLRGCARPTLGANINLGSFYFVGM 447

Query:   439 PVAILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCRTDWMVQAERAKELT-QTNATCL 497
             PVAIL GFV K GFPGLW GLLAAQA+CA +ML  L RTDW VQAERA+ELT QT     
Sbjct:   448 PVAILFGFVFKQGFPGLWFGLLAAQATCASLMLCALLRTDWKVQAERAEELTSQTPGKSP 507

Query:   498 LILPVLS-KPEDTIVTK 513
              +LP+ S K   T  T+
Sbjct:   508 PLLPIASSKSRSTSGTE 524
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009624 "response to nematode" evidence=IEP
GO:0003156 "regulation of organ formation" evidence=IMP
GO:0043226 "organelle" evidence=IDA
GO:0006810 "transport" evidence=IGI
GO:0017119 "Golgi transport complex" evidence=IDA
GO:0022857 "transmembrane transporter activity" evidence=IGI
GO:0055072 "iron ion homeostasis" evidence=IMP
TAIR|locus:2127193 AT4G23030 "AT4G23030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119941 ADS1 "AT4G29140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183169 AT5G19700 "AT5G19700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173098 AT5G52050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064138 AT2G38510 "AT2G38510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013006 AT1G71870 "AT1G71870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155179 AT5G49130 "AT5G49130" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132619 AT4G22790 "AT4G22790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156737 AT5G52450 "AT5G52450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5RFD2S47A1_PONABNo assigned EC number0.31550.88600.8596yesno
Q96FL8S47A1_HUMANNo assigned EC number0.31550.88600.8596yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query553
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-180
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 7e-59
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 1e-50
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 4e-50
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 1e-39
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 9e-33
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 3e-32
pfam01554161 pfam01554, MatE, MatE 8e-32
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 2e-31
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 3e-31
pfam01554161 pfam01554, MatE, MatE 4e-28
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 3e-27
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 6e-27
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 8e-23
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 2e-17
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 1e-14
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 3e-13
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 4e-13
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 4e-11
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 2e-10
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 9e-09
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 1e-08
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 1e-07
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 3e-07
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 4e-07
COG2244480 COG2244, RfbX, Membrane protein involved in the ex 7e-07
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 1e-06
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 6e-06
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 2e-04
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 2e-04
cd13128402 cd13128, MATE_Wzx_like, Wzx, a subfamily of the mu 3e-04
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 0.001
cd13140 435 cd13140, MATE_like_1, Uncharacterized subfamily of 0.002
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  515 bits (1328), Expect = e-180
 Identities = 182/437 (41%), Positives = 291/437 (66%), Gaps = 1/437 (0%)

Query: 49  EMKAIGKISGPTAMTGLILYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGLA 108
           E K + +++ P  +T L+ YS +++S++F+G+LG+LELA  SL+  FAN+TG+S+L GLA
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 109 MGMEPICGQAYGAKQWKLLGITLQRTVLLLLSTSLPISFMWLNMKRILLWCGQDDEISSV 168
             ++ +CGQA+GAK +KL+G+ LQR +++LL   +PIS +WLN + ILL  GQD EI+ +
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 169 AQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYCSAISVLLHVPLNFLLVVHFKMGI 228
           A  ++ + IP LF  +L  PL+ YL++QGI LPL Y S +++LL++ LN+LLV    +G 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 229 AGVAIAMVWTNLNLFLLLSSFVYFSGVHKDSWVSPSMDCVRGWSSLLALAIPNCISVCLE 288
            G A+A   +   + +LL  +++FS  HK +W   S +  RGW   L LAIP+ + +CLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 289 WWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSK 348
           WW +E+++++ GLL     A+A+  I +  TSL+Y+ P  +S+  S RVGNELGA  P +
Sbjct: 241 WWAFEILVLLAGLL-PGTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 349 ARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCP 408
           A+++ IV+L  ++ +G++  +   ++R  W   FT+D E++ L A  LPI+ L ++ +  
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 409 QTTGCGVLRGSARPKTGASINLGSFYLVGMPVAILMGFVAKMGFPGLWLGLLAAQASCAL 468
           Q    GVLRG  R K GA +NL ++YL+G+PV +L+ FV  +G  GLW+GL+A     A+
Sbjct: 360 QAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIAGLILQAV 419

Query: 469 VMLHVLCRTDWMVQAER 485
           ++L ++ RTDW  +AE+
Sbjct: 420 ILLLIILRTDWDKEAEK 436

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|225153 COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 553
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.97
PRK10459492 colanic acid exporter; Provisional 99.97
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.96
COG2244480 RfbX Membrane protein involved in the export of O- 99.95
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.88
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.88
PRK10189 478 MATE family multidrug exporter; Provisional 99.87
PRK00187 464 multidrug efflux protein NorA; Provisional 99.87
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.86
PRK01766 456 multidrug efflux protein; Reviewed 99.85
TIGR01695502 mviN integral membrane protein MviN. This model re 99.81
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.78
TIGR00797342 matE putative efflux protein, MATE family. The MAT 99.75
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.74
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.73
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.7
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.69
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.68
PRK10459492 colanic acid exporter; Provisional 99.66
PRK15099416 O-antigen translocase; Provisional 99.62
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.61
COG2244480 RfbX Membrane protein involved in the export of O- 99.56
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.36
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.18
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.17
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.89
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.44
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.33
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.15
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.89
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 97.87
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 97.84
COG4267467 Predicted membrane protein [Function unknown] 97.81
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.8
PF12794340 MscS_TM: Mechanosensitive ion channel inner membra 93.48
COG4267 467 Predicted membrane protein [Function unknown] 86.97
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-56  Score=461.91  Aligned_cols=437  Identities=26%  Similarity=0.337  Sum_probs=415.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCChh
Q 008783           46 ALEEMKAIGKISGPTAMTGLILYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQWK  125 (553)
Q Consensus        46 ~~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~  125 (553)
                      .+++.|+++++++|++++++++.+++++|++++||+|++++++.+++.++..++ ..+..|+++|..+++||++|++|++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence            566899999999999999999999999999999999999999999999999988 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHH
Q 008783          126 LLGITLQRTVLLLLSTSLPISFM-WLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTY  204 (553)
Q Consensus       126 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  204 (553)
                      ++++..++++.+.+++++++.++ +.+.++++.+++.++++.+.+.+|+++..++.|+..++..+.+++|+.|+++.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            99999999999999999877766 99999999999998889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhh-cC-CchhHHHHHHHHHHHHHHHHHHHHHHhcccc-cccCCCCchhhHHhHHHHHHHHhhH
Q 008783          205 CSAISVLLHVPLNFLLVVH-FK-MGIAGVAIAMVWTNLNLFLLLSSFVYFSGVH-KDSWVSPSMDCVRGWSSLLALAIPN  281 (553)
Q Consensus       205 ~~i~~~~~~i~l~~~li~~-~~-~g~~Gaa~a~~is~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~p~  281 (553)
                      .++++.++|+++|++|+++ ++ +|+.|+++||++++.+..++.+++++++++. .....+..+++++.+|+++++|+|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999998 67 9999999999999999999999999887752 2222233367789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcCCChhHHHHHHHHHHHHHH
Q 008783          282 CISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIVSLFCAV  361 (553)
Q Consensus       282 ~~~~~~~~~~~~~~~~l~~~~~~g~~~va~~~i~~~i~~l~~~~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~~~~~  361 (553)
                      ++++..+...+.+.+.+++++++  +.+|+|+++.++.++.++++.|++++.++++++++|+||++++++..+.++.+++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G~--~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~  328 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLGT--VALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL  328 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999976  9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhHHHH
Q 008783          362 ALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVA  441 (553)
Q Consensus       362 ~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~  441 (553)
                      ++++..+++++++++++.++|++|+++.+.+..++++..+..++++++.+..+++||.||++.++..++.+.|.+.+|+.
T Consensus       329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~  408 (455)
T COG0534         329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA  408 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Q 008783          442 ILMGFVAKMGFPGLWLGLLAAQASCALVMLHVLCRTDWMVQAERA  486 (553)
Q Consensus       442 ~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (553)
                      +++.++. +|..|+|+++..++.+..++...+++|.+|++...+.
T Consensus       409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (455)
T COG0534         409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAA  452 (455)
T ss_pred             HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence            9998876 8999999999999999999999999999998766544

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1 Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query553
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 2e-16
4huk_A459 Mate Transporter Norm-ng In Complex With Tpp And Mo 1e-10
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 159/382 (41%), Gaps = 25/382 (6%)
Query: 106 GLAMGMEPICGQAYGAKQWKLLGITLQRTVLLLLSTSLPISFMWLNMKRILLWCGQDDEI 165
           GL M + P+  Q  GA +   +   + + ++L L  S+PI  +    + I+ +   ++ +
Sbjct: 66  GLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAM 125
Query: 166 SSVAQTF---ILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYCSAISVLLHVPLNFLLVV 222
           ++    +   ++FA+P      L   LR +     +T P      I +LL++PLN++  V
Sbjct: 126 ATKTVGYMHAVIFAVPAYL---LFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIF-V 181
Query: 223 HFKMGI-------AGVAIAMVWTXXXXXXXXXXXVYFSGVHKDSWVSPSMDCVRGWSSLL 275
           + K G         GVA A+V+                  H   + +      +    L 
Sbjct: 182 YGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLF 241
Query: 276 ALAIPNCISVCLEWWWYELMIMICGLLINP--KAAIASMGILIQITSLIYVFPSSLSLGV 333
            L  P   ++  E      +  +  LL+ P     +A+  + +  +SL+++FP S+   V
Sbjct: 242 RLGFPVAAALFFE----VTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAV 297
Query: 334 STRVGNELGANRPSKARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTA 393
           S RVG++LG      A I+  V L   +A   +  L T L R +    +T +  ++ L  
Sbjct: 298 SIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAM 357
Query: 394 IALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVAILMGFV-----A 448
             L    + +  +  Q    G LRG             S++++G+P   ++G        
Sbjct: 358 QLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQ 417
Query: 449 KMGFPGLWLGLLAAQASCALVM 470
            +G  G WLG +   ++ AL++
Sbjct: 418 PLGAKGFWLGFIIGLSAAALML 439
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody Length = 459 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query553
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 1e-87
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  277 bits (710), Expect = 1e-87
 Identities = 86/435 (19%), Positives = 180/435 (41%), Gaps = 14/435 (3%)

Query: 48  EEMKAIGKISGPTAMTGLILYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGL 107
           +E   + K++ P  +  +       +  +  G +  +++A  S++     +       GL
Sbjct: 9   KEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASI-WLPSILFGVGL 67

Query: 108 AMGMEPICGQAYGAKQWKLLGITLQRTVLLLLSTSLPISFMWLNMKRILLWCGQDDEISS 167
            M + P+  Q  GA +   +   + + ++L L  S+PI  +    + I+ +   ++ +++
Sbjct: 68  LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMAT 127

Query: 168 VAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLTYCSAISVLLHVPLNFLLVV-HF-- 224
               ++   I  +    L   LR +     +T P      I +LL++PLN++ V   F  
Sbjct: 128 KTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGA 187

Query: 225 -KMGIAGVAIAMVWTNLNLFLLLSSFVYFSGVHKD--SWVSPSMDCVRGWSSLLALAIPN 281
            ++G  G  +A       + LLL  ++  S        + +      +    L  L  P 
Sbjct: 188 PELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPV 247

Query: 282 CISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNEL 341
             ++  E   + ++ ++   L      +A+  + +  +SL+++FP S+   VS RVG++L
Sbjct: 248 AAALFFEVTLFAVVALLVAPL--GSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKL 305

Query: 342 GANRPSKARISMIVSLFCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGL 401
           G      A I+  V L   +A   +  L T L R +    +T +  ++ L    L    +
Sbjct: 306 GEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAI 365

Query: 402 CELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVGMPVAILMGFV-----AKMGFPGLW 456
            +  +  Q    G LRG             S++++G+P   ++G         +G  G W
Sbjct: 366 YQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFW 425

Query: 457 LGLLAAQASCALVML 471
           LG +   ++ AL++ 
Sbjct: 426 LGFIIGLSAAALMLG 440

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query553
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.8
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 91.46
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 85.39
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 84.71
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=1.2e-47  Score=400.35  Aligned_cols=432  Identities=20%  Similarity=0.350  Sum_probs=399.5

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCC
Q 008783           44 SEALEEMKAIGKISGPTAMTGLILYSRAMISMLFLGYLGELELAGGSLSIGFANITGYSVLSGLAMGMEPICGQAYGAKQ  123 (553)
Q Consensus        44 ~~~~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~a~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~  123 (553)
                      ...+++.|++++.++|.+++++++.+++.+|+.+++|+|++++|+++++.++..+. ..+..|++++..+.++|++|++|
T Consensus         5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~   83 (460)
T 3mkt_A            5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGR   83 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence            34667899999999999999999999999999999999999999999999998776 78889999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHH
Q 008783          124 WKLLGITLQRTVLLLLSTSLPISFMWLNMKRILLWCGQDDEISSVAQTFILFAIPDLFFLSLLHPLRVYLRSQGITLPLT  203 (553)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  203 (553)
                      +++.++.+++++.+.+++++++.+++.+.++++.+++.+++..+.+..|++++.++.++..+.....+++|+.|+++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~  163 (460)
T 3mkt_A           84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM  163 (460)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            99999999999999999999887777888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhh-c---CCchhHHHHHHHHHHHHHHHHHHHHHHhcccccc-c-CCCCchhhHHhHHHHHHH
Q 008783          204 YCSAISVLLHVPLNFLLVVH-F---KMGIAGVAIAMVWTNLNLFLLLSSFVYFSGVHKD-S-WVSPSMDCVRGWSSLLAL  277 (553)
Q Consensus       204 ~~~i~~~~~~i~l~~~li~~-~---~~g~~Gaa~a~~is~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~ll~~  277 (553)
                      +.++++.++|+++++++++. +   ++|+.|+++++.+++.+..++..++++++++.+. + ++++.+.+++.+|+++++
T Consensus       164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  243 (460)
T 3mkt_A          164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL  243 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence            99999999999999999985 4   6999999999999999999988888776554321 1 233335567889999999


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhcCCChhHHHHHHHHHH
Q 008783          278 AIPNCISVCLEWWWYELMIMICGLLINPKAAIASMGILIQITSLIYVFPSSLSLGVSTRVGNELGANRPSKARISMIVSL  357 (553)
Q Consensus       278 ~~p~~~~~~~~~~~~~~~~~l~~~~~~g~~~va~~~i~~~i~~l~~~~~~~l~~~~~~~vs~~~g~~~~~~~~~~~~~~~  357 (553)
                      |+|.+++++.+++.+.+++.+++.+++  +++|+|+++.++.++...+..+++++..|.+++++|++|.+++++..++++
T Consensus       244 ~~p~~~~~~~~~~~~~~~~~~~~~~g~--~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~  321 (460)
T 3mkt_A          244 GFPVAAALFFEVTLFAVVALLVAPLGS--TVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGL  321 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCTTSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            999999999999999999999999965  999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhh
Q 008783          358 FCAVALGLMAVLFTTLMRHKWGRFFTNDAEILELTAIALPIIGLCELGNCPQTTGCGVLRGSARPKTGASINLGSFYLVG  437 (553)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~i~~l~~~d~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  437 (553)
                      ++++.++++++++++++++++..+|++|+++.+.+..++++++++.++.+++.+..+++++.||++.+++.++++.|+++
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~  401 (460)
T 3mkt_A          322 MTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLG  401 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998889999999999999999999999999999999999999999999998999


Q ss_pred             HHHHHHHHHh----hc-CChhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 008783          438 MPVAILMGFV----AK-MGFPGLWLGLLAAQASCALVMLHVLCRTD  478 (553)
Q Consensus       438 i~~~~~l~~~----~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~  478 (553)
                      +|+.+++...    ++ +|..|+|+++.+++.+..++....++|..
T Consensus       402 i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~  447 (460)
T 3mkt_A          402 LPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQ  447 (460)
T ss_dssp             HHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred             HHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999876    56 89999999999999999888777666543
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00