Citrus Sinensis ID: 008808
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 553 | 2.2.26 [Sep-21-2011] | |||||||
| P04802 | 557 | Aspartate--tRNA ligase, c | yes | no | 0.942 | 0.935 | 0.484 | 1e-134 | |
| Q922B2 | 501 | Aspartate--tRNA ligase, c | yes | no | 0.801 | 0.884 | 0.530 | 1e-133 | |
| P15178 | 501 | Aspartate--tRNA ligase, c | yes | no | 0.801 | 0.884 | 0.524 | 1e-132 | |
| Q3SYZ4 | 501 | Aspartate--tRNA ligase, c | yes | no | 0.795 | 0.878 | 0.530 | 1e-131 | |
| P14868 | 501 | Aspartate--tRNA ligase, c | yes | no | 0.801 | 0.884 | 0.535 | 1e-131 | |
| Q5R9I5 | 501 | Aspartate--tRNA ligase, c | yes | no | 0.801 | 0.884 | 0.533 | 1e-130 | |
| Q03577 | 531 | Aspartate--tRNA ligase, c | yes | no | 0.925 | 0.964 | 0.467 | 1e-129 | |
| Q75JQ1 | 576 | Aspartate--tRNA ligase, c | yes | no | 0.860 | 0.826 | 0.451 | 1e-127 | |
| O74407 | 580 | Aspartate--tRNA ligase, c | yes | no | 0.869 | 0.829 | 0.457 | 1e-122 | |
| Q8SRQ8 | 473 | Probable aspartate--tRNA | yes | no | 0.813 | 0.951 | 0.401 | 4e-88 |
| >sp|P04802|SYDC_YEAST Aspartate--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DPS1 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 478 bits (1230), Expect = e-134, Method: Compositional matrix adjust.
Identities = 263/543 (48%), Positives = 346/543 (63%), Gaps = 22/543 (4%)
Query: 18 SQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVND 77
S+ KK K++ ++ KEER + EA A + E+ +NYG +PL +QS +
Sbjct: 30 SKKALKKLQKEQEKQRKKEERALQLEAEREAREKKAAAEDTA-KDNYGKLPL--IQSRDS 86
Query: 78 PQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQC 137
+TG+ + V D+EVL R RVH TR G LAF+ +R++ S +Q
Sbjct: 87 DRTGQ-------KRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQG 139
Query: 138 LATV-KPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGAT-QQVEVQIKKLYCVSR 195
L K ++SK MV++ SL+ ESIV V G+V D IK AT Q +E+ I K+Y +S
Sbjct: 140 LVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISE 199
Query: 196 AAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQV 254
+ PI +EDASRSEAE E A LP VN DTRL+ RVID+RT+ NQ IFRIQ+ V
Sbjct: 200 TPEALPILLEDASRSEAEAEAAG-----LPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGV 254
Query: 255 GNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDF 314
+FR++L ++ F E+HTPKL+ SEGGS+VF + Y A LAQSPQ +KQ I DF
Sbjct: 255 CELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADF 314
Query: 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCK 374
RV+E GPVFRAE+S THRH+ EFTGLD+EM ++HY EV+D + LFV IF L
Sbjct: 315 ERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFA 374
Query: 375 KELEAVAKQYPFEPLKYKP--KTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLV 432
E+E V KQYP E K K +RLT++EG++ML+ AG EI DL+TE+E+ LG+LV
Sbjct: 375 HEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKLV 434
Query: 433 LEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAE 492
+KY T+FYIL ++PL +RPFYTMP N YSNS+D F+RGEEI+SGAQRIH L E
Sbjct: 435 RDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQE 494
Query: 493 RAQACGIDVKT--ISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLR 550
R +A G+ + + Y D F YG PPH G G+GLERVVM + L NIR+ SL+PRDP R
Sbjct: 495 RMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPRDPKR 554
Query: 551 IAP 553
+ P
Sbjct: 555 LRP 557
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 2 |
| >sp|Q922B2|SYDC_MOUSE Aspartate--tRNA ligase, cytoplasmic OS=Mus musculus GN=Dars PE=2 SV=2 | Back alignment and function description |
|---|
Score = 474 bits (1221), Expect = e-133, Method: Compositional matrix adjust.
Identities = 240/452 (53%), Positives = 321/452 (71%), Gaps = 9/452 (1%)
Query: 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIV 163
D V +R RVHT+R G K F+V+R++ VQ L V D SK+MV+F +++ ESI+
Sbjct: 57 DDVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVG-DHASKQMVKFAANINKESII 114
Query: 164 DVIGVVSVPDVEIKGATQQ-VEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGV 221
DV GVV + +I TQQ VE+ ++K+Y +S A + P+ ++DA R E E E+ + V
Sbjct: 115 DVEGVVRKVNQKIGSCTQQDVELHVQKIYVISLAEPRLPLQLDDAIRPEVEGEEDGRATV 174
Query: 222 QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 281
NQDTRL+NRVID+RT +Q IFR+QS + ++FR+ L+++ FVEI TPK+I+ +SE
Sbjct: 175 -----NQDTRLDNRVIDLRTSTSQAIFRLQSGICHLFRETLINKGFVEIQTPKIISAASE 229
Query: 282 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 341
GG+ VF + Y +A LAQSPQL+KQM IC DF +VF GPVFRAEDS THRHL EF GL
Sbjct: 230 GGANVFTVSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGL 289
Query: 342 DVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 401
D+EM HY EV++ + V IF GL + E++ V+KQ+P EP K+ TLRL +
Sbjct: 290 DIEMAFNYHYHEVVEEIADTLVQIFKGLQERFQTEIQTVSKQFPCEPFKFLEPTLRLEYC 349
Query: 402 EGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDN 461
E + ML++AGVE+D DL+T +E+ LG+LV EKY T+FY+L +YPLAVRPFYTMP N
Sbjct: 350 EALAMLREAGVEMDDEEDLSTPNEKLLGRLVKEKYDTDFYVLDKYPLAVRPFYTMPDPRN 409
Query: 462 SLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGF 521
SNS+D+F+RGEEI+SGAQRIH P+ L ERA GID++ I YIDSFR+GAPPH G
Sbjct: 410 PKQSNSYDMFMRGEEILSGAQRIHDPQLLTERALHHGIDLEKIKAYIDSFRFGAPPHAGG 469
Query: 522 GVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
G+GLERV MLF GL+N+R+TS++PRDP R+ P
Sbjct: 470 GIGLERVTMLFLGLHNVRQTSMFPRDPKRLTP 501
|
Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|P15178|SYDC_RAT Aspartate--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Dars PE=2 SV=1 | Back alignment and function description |
|---|
Score = 471 bits (1213), Expect = e-132, Method: Compositional matrix adjust.
Identities = 237/452 (52%), Positives = 320/452 (70%), Gaps = 9/452 (1%)
Query: 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIV 163
D+ V +R RVHT+R G K F+V+R++ VQ L V D SK+MV+F +++ ESI+
Sbjct: 57 DEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVG-DHASKQMVKFAANINKESII 114
Query: 164 DVIGVVSVPDVEIKGATQQ-VEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGV 221
DV G+V + +I TQQ VE+ ++K+Y +S A + P+ ++DA R E E E+ + V
Sbjct: 115 DVEGIVRKVNQKIGSCTQQDVELHVQKIYVISLAEPRLPLQLDDAIRPEVEGEEDGRATV 174
Query: 222 QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 281
NQDTRL+NR+ID+RT +Q IF +QS + ++FR+ L+++ FVEI TPK+I+ +SE
Sbjct: 175 -----NQDTRLDNRIIDLRTSTSQAIFHLQSGICHLFRETLINKGFVEIQTPKIISAASE 229
Query: 282 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 341
GG+ VF + Y +A LAQSPQL+KQM IC DF +VF GPVFRAEDS THRHL EF GL
Sbjct: 230 GGANVFTVSYFKSNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGL 289
Query: 342 DVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 401
D+EM HY EV++ + V IF GL + E++ V KQ+P EP K+ TLRL +
Sbjct: 290 DIEMAFNYHYHEVVEEIADTLVQIFKGLQERFQTEIQTVNKQFPCEPFKFLEPTLRLEYC 349
Query: 402 EGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDN 461
E + ML++AGVE+D DL+T +E+ LG+LV EKY T+FY+L +YPLAVRPFYTMP N
Sbjct: 350 EALAMLREAGVEMDDEEDLSTPNEKLLGRLVKEKYDTDFYVLDKYPLAVRPFYTMPDPRN 409
Query: 462 SLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGF 521
SNS+D+F+RGEEI+SGAQRIH P+ L ERA GID++ I YIDSFR+GAPPH G
Sbjct: 410 PKQSNSYDMFMRGEEILSGAQRIHDPQLLTERALHHGIDLEKIKAYIDSFRFGAPPHAGG 469
Query: 522 GVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
G+GLERV MLF GL+N+R+TS++PRDP R+ P
Sbjct: 470 GIGLERVTMLFLGLHNVRQTSMFPRDPKRLTP 501
|
Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|Q3SYZ4|SYDC_BOVIN Aspartate--tRNA ligase, cytoplasmic OS=Bos taurus GN=DARS PE=2 SV=1 | Back alignment and function description |
|---|
Score = 468 bits (1204), Expect = e-131, Method: Compositional matrix adjust.
Identities = 238/449 (53%), Positives = 316/449 (70%), Gaps = 9/449 (2%)
Query: 107 VLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVI 166
V +R RVHT+R G K F+V+R++ VQ L V D SK+MV+F +++ ESIVDV
Sbjct: 60 VWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVG-DHASKQMVKFAANINKESIVDVE 117
Query: 167 GVVSVPDVEIKGATQQ-VEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLP 224
GVV + +I TQQ VE+ ++K+Y +S A + P+ ++DA R E E E+ + V
Sbjct: 118 GVVRKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDDAVRPEVEGEEEGRATV--- 174
Query: 225 RVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS 284
NQDTRL+NRVID+RT +Q IFR+QS + + FR+ L ++ FVEI TPK+I+ +SEGG+
Sbjct: 175 --NQDTRLDNRVIDLRTSTSQAIFRLQSGICHPFRETLTNKGFVEIQTPKIISAASEGGA 232
Query: 285 AVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVE 344
VF + Y +A LAQSPQL+KQM IC DF +VF GPVFRAEDS THRHL EF GLD+E
Sbjct: 233 NVFTVSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGLDIE 292
Query: 345 MEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGV 404
M HY EV++ + V IF GL + E++ V KQ+P EP K+ TLRL + E +
Sbjct: 293 MAFNYHYHEVVEEIADTLVQIFKGLQKRFQTEIQTVNKQFPCEPFKFLEPTLRLEYCEAL 352
Query: 405 QMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLY 464
ML++AG+E+ DL+T +E+ LG+LV EKY T+FYIL +YPLAVRPFYTMP N
Sbjct: 353 AMLREAGIEMGDEEDLSTPNEKLLGRLVKEKYDTDFYILDKYPLAVRPFYTMPDPRNPKQ 412
Query: 465 SNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVG 524
SNS+D+F+RGEEI+SGAQRIH P+ + ERA GID++ I YIDSFR+GAPPH G G+G
Sbjct: 413 SNSYDMFMRGEEILSGAQRIHDPQLVTERALHHGIDLEKIKAYIDSFRFGAPPHAGGGIG 472
Query: 525 LERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
LERV MLF GL+N+R+TS++PRDP R+ P
Sbjct: 473 LERVTMLFLGLHNVRQTSMFPRDPKRLTP 501
|
Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. Bos taurus (taxid: 9913) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|P14868|SYDC_HUMAN Aspartate--tRNA ligase, cytoplasmic OS=Homo sapiens GN=DARS PE=1 SV=2 | Back alignment and function description |
|---|
Score = 468 bits (1203), Expect = e-131, Method: Compositional matrix adjust.
Identities = 242/452 (53%), Positives = 320/452 (70%), Gaps = 9/452 (1%)
Query: 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIV 163
D+ V +R RVHT+R G K F+V+R++ VQ L V D SK+MV+F +++ ESIV
Sbjct: 57 DEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVG-DHASKQMVKFAANINKESIV 114
Query: 164 DVIGVVSVPDVEIKGATQQ-VEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGV 221
DV GVV + +I TQQ VE+ ++K+Y +S A + P+ ++DA R EAE E+ + V
Sbjct: 115 DVEGVVRKVNQKIGSCTQQDVELHVQKIYVISLAEPRLPLQLDDAVRPEAEGEEEGRATV 174
Query: 222 QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 281
NQDTRL+NRVID+RT +Q +FR+QS + ++FR+ L+++ FVEI TPK+I+ +SE
Sbjct: 175 -----NQDTRLDNRVIDLRTSTSQAVFRLQSGICHLFRETLINKGFVEIQTPKIISAASE 229
Query: 282 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 341
GG+ VF + Y +A LAQSPQL+KQM IC DF +VF GPVFRAEDS THRHL EF GL
Sbjct: 230 GGANVFTVSYFKNNAYLAQSPQLYKQMCICADFEKVFSIGPVFRAEDSNTHRHLTEFVGL 289
Query: 342 DVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 401
D+EM HY EVM+ + V IF GL + E++ V KQ+P EP K+ TLRL +
Sbjct: 290 DIEMAFNYHYHEVMEEIADTMVQIFKGLQERFQTEIQTVNKQFPCEPFKFLEPTLRLEYC 349
Query: 402 EGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDN 461
E + ML++AGVE+ DL+T +E+ LG LV EKY T+FYIL +YPLAVRPFYTMP N
Sbjct: 350 EALAMLREAGVEMGDEDDLSTPNEKLLGHLVKEKYDTDFYILDKYPLAVRPFYTMPDPRN 409
Query: 462 SLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGF 521
SNS+D+F+RGEEI+SGAQRIH P+ L ERA GID++ I YIDSFR+GAPPH G
Sbjct: 410 PKQSNSYDMFMRGEEILSGAQRIHDPQLLTERALHHGIDLEKIKAYIDSFRFGAPPHAGG 469
Query: 522 GVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
G+GLERV MLF GL+N+R+TS++PRDP R+ P
Sbjct: 470 GIGLERVTMLFLGLHNVRQTSMFPRDPKRLTP 501
|
Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|Q5R9I5|SYDC_PONAB Aspartate--tRNA ligase, cytoplasmic OS=Pongo abelii GN=DARS PE=2 SV=1 | Back alignment and function description |
|---|
Score = 467 bits (1202), Expect = e-130, Method: Compositional matrix adjust.
Identities = 241/452 (53%), Positives = 321/452 (71%), Gaps = 9/452 (1%)
Query: 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIV 163
D+ V +R RVHT+R G K F+V+R++ VQ L V D SK+MV+F +++ ESIV
Sbjct: 57 DEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVG-DHASKQMVKFAANINKESIV 114
Query: 164 DVIGVVSVPDVEIKGATQQ-VEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGV 221
DV GVV + +I+ TQQ VE+ ++K+Y +S A + P+ ++DA R EAE E+ + V
Sbjct: 115 DVEGVVRKVNQKIESCTQQDVELHVQKIYVISLAEPRLPLQLDDAVRPEAEGEEEGRATV 174
Query: 222 QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 281
NQDTRL+NRVID+RT +Q +FR+QS + ++FR+ L+++ FVEI TPK+I+ +SE
Sbjct: 175 -----NQDTRLDNRVIDLRTSTSQAVFRLQSGICHLFRETLINKGFVEIQTPKIISAASE 229
Query: 282 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 341
GG+ VF + Y +A LAQSPQL+KQM IC DF +VF GPVFRAEDS THRHL EF GL
Sbjct: 230 GGANVFTVSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGL 289
Query: 342 DVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 401
D+EM HY EVM+ + V IF GL + E++ V KQ+P EP K+ TLRL +
Sbjct: 290 DIEMAFNYHYHEVMEEIADTMVQIFKGLQERFQTEIQTVNKQFPCEPFKFLEPTLRLEYC 349
Query: 402 EGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDN 461
E + ML++AGVE+ DL+T +E+ LG L+ EKY T+FYIL +YPLAVRPFYTMP N
Sbjct: 350 EALAMLREAGVEMGDEDDLSTPNEKLLGHLIKEKYDTDFYILDKYPLAVRPFYTMPDPRN 409
Query: 462 SLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGF 521
SNS+D+F+RGEEI+SGAQRIH P+ L ERA GID++ I YIDSFR+GAPPH G
Sbjct: 410 PKQSNSYDMFMRGEEILSGAQRIHDPQLLTERALHHGIDLEKIKAYIDSFRFGAPPHAGG 469
Query: 522 GVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
G+GLERV MLF GL+N+R+TS++PRDP R+ P
Sbjct: 470 GIGLERVTMLFLGLHNVRQTSMFPRDPKRLTP 501
|
Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. Pongo abelii (taxid: 9601) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|Q03577|SYDC_CAEEL Aspartate--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans GN=drs-1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 462 bits (1190), Expect = e-129, Method: Compositional matrix adjust.
Identities = 253/541 (46%), Positives = 345/541 (63%), Gaps = 29/541 (5%)
Query: 21 ISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQT 80
+SKK K A K K+E K E + A ++++E + YG L
Sbjct: 12 LSKKELNKLARKAKKDE--KAGEKGGNQQQAAAMDQEDASKDFYGSYGL----------- 58
Query: 81 GKWSEAVNGREWTVVGAL-----NGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTV 135
VN +E V+ L N S ++V +RGR+HTTR G K F+V+R+ V TV
Sbjct: 59 ------VNSKEKKVLNFLKVKEINVSNATKDVWVRGRIHTTRSKG-KNCFLVLRQGVYTV 111
Query: 136 QCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQ-VEVQIKKLYCVS 194
Q +A + +SK+M++FV S+S ESIVDV ++ D I+ TQ+ VE+ ++++ VS
Sbjct: 112 Q-VAMFMNEKISKQMLKFVSSISKESIVDVYATINKVDNPIESCTQKDVELLAQQVFVVS 170
Query: 195 RAA-KTPITIEDASR-SEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQS 252
+A K P+ IEDASR + + EKAS++ QL VN DTRL+NRVID+RT + IFRIQ+
Sbjct: 171 TSAPKLPLQIEDASRRAPTDEEKASEQENQLAVVNLDTRLDNRVIDLRTPTSHAIFRIQA 230
Query: 253 QVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICG 312
+ N FR L FVEI PK+I+ SEGG+ VF + Y SA LAQSPQL+KQM+I G
Sbjct: 231 GICNQFRNILDVRGFVEIMAPKIISAPSEGGANVFEVSYFKGSAYLAQSPQLYKQMAIAG 290
Query: 313 DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNV 372
DF +V+ GPVFRAEDS THRH+ EF GLD+EM HY EVM+ + + +F GL
Sbjct: 291 DFEKVYTIGPVFRAEDSNTHRHMTEFVGLDLEMAFNFHYHEVMETIAEVLTQMFKGLQQN 350
Query: 373 CKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLV 432
+ E+ AV QYP EP ++ L L + + + +L++ G+EI DL+T E+ LG+LV
Sbjct: 351 YQDEIAAVGNQYPAEPFQFCEPPLILKYPDAITLLRENGIEIGDEDDLSTPVEKFLGKLV 410
Query: 433 LEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAE 492
EKY T+FY+L ++PL+VRPFYTMP + YSNS+D+F+RGEEI+SGAQRIH + L E
Sbjct: 411 KEKYSTDFYVLDKFPLSVRPFYTMPDAHDERYSNSYDMFMRGEEILSGAQRIHDADMLVE 470
Query: 493 RAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIA 552
RA+ +D+ I +YIDSF+YG PPH G G+GLERV MLF GL+NIR SL+PRDP R+
Sbjct: 471 RAKHHQVDLAKIQSYIDSFKYGCPPHAGGGIGLERVTMLFLGLHNIRLASLFPRDPKRLT 530
Query: 553 P 553
P
Sbjct: 531 P 531
|
Caenorhabditis elegans (taxid: 6239) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|Q75JQ1|SYDC1_DICDI Aspartate--tRNA ligase, cytoplasmic 1 OS=Dictyostelium discoideum GN=aspS1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 455 bits (1170), Expect = e-127, Method: Compositional matrix adjust.
Identities = 237/525 (45%), Positives = 327/525 (62%), Gaps = 49/525 (9%)
Query: 62 NNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGN 121
+N+G++P+ + S+ REWT V L SL + VLIR R+ T+R G
Sbjct: 68 SNWGELPMNQ------------SKEKITREWTDVSQLTESLVGKSVLIRARLSTSRLQGA 115
Query: 122 KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQ 181
L FV +R+ + TVQ + K S SK MV+FV + ESIVDV V V I+ TQ
Sbjct: 116 NLCFVQLRDGLYTVQAVV-AKGGSNSKSMVQFVGQVPKESIVDVQATVVSTSVPIESCTQ 174
Query: 182 Q-VEVQIKKLYCVSRAAKTPITIEDASRSE---------------------------AEI 213
+ VE+Q+ + VS++ P+ IED SR++ ++
Sbjct: 175 KSVELQVSSFFIVSKSTLLPLQIEDLSRAQPLLDKQEDDLKQLEQLLQNTNLNEQEKTDL 234
Query: 214 EKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTP 273
EK E ++ V+Q+ RL+NR +D+R A+Q IFR+QS V +FR+ LL E F+EIH+P
Sbjct: 235 EKKKSECIKFVNVSQEKRLDNRALDLRVPAHQSIFRLQSGVCTLFREQLLGEGFIEIHSP 294
Query: 274 KLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHR 333
K+I+ +SE G++VF+L+Y A LAQSPQL+KQM+IC DF +VFE GPVFRAE+S THR
Sbjct: 295 KIISAASESGASVFKLNYFNTHAYLAQSPQLYKQMAICADFNKVFEIGPVFRAENSNTHR 354
Query: 334 HLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKP 393
HL EF GLD+EM K HY E +D +DRL +IF GL KE+E+V QYPFEP K+
Sbjct: 355 HLTEFVGLDLEMTFKDHYHEALDTLDRLMTSIFRGLETRFAKEIESVNTQYPFEPFKFTY 414
Query: 394 KTLRLTFEEGVQMLKDAGVEIDP-----LGDLNTESERKLGQLVLEKYGTEFYILHRYPL 448
+ R TF+E ML + DP D NT E++LG+++ EK+G +F+I+ ++ +
Sbjct: 415 PSPRFTFDEAAAMLAELN---DPDYIVKDNDFNTRQEKRLGKIIKEKFGVDFFIVDKFHV 471
Query: 449 AVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYI 508
VRPFYTMP +N ++N++D+F+RGEEI SGAQRIH PE L + A++ G+ ++ I YI
Sbjct: 472 EVRPFYTMPDPNNPQWANAYDLFMRGEEICSGAQRIHDPELLEKSAKSHGVVIEDIQGYI 531
Query: 509 DSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
DSF+YG H G GVGLERVVML+ GL NIRK S PRDP R+ P
Sbjct: 532 DSFKYGCSQHAGGGVGLERVVMLYLGLGNIRKASFCPRDPTRLTP 576
|
Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|O74407|SYDC_SCHPO Aspartate--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dps1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 441 bits (1133), Expect = e-122, Method: Compositional matrix adjust.
Identities = 238/520 (45%), Positives = 319/520 (61%), Gaps = 39/520 (7%)
Query: 61 ANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVG 120
A YGD+PL S A GR +T + ++ Q VL+R RV+T+R G
Sbjct: 73 AGKYGDLPLNR------------STARPGRTYTQISDISAKNDGQTVLLRARVYTSRLQG 120
Query: 121 NKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGAT 180
NK+ F +R++ T+Q LA V D++SK+MV++ S+S ESIV V G+V IK AT
Sbjct: 121 NKMCFFSLRQKYDTIQALAVVNKDTISKQMVKWCGSISLESIVLVEGIVKKSPEIIKSAT 180
Query: 181 -QQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEI----EKASKEGVQLPRVNQDTRLNN 234
Q E+ I +Y +S K P +EDA RSE +I E A++ + RVN DTRL+N
Sbjct: 181 VQDAEIHISSIYVISPIKKNLPFLVEDAGRSEEQIRESEENAAEGDSKFVRVNLDTRLDN 240
Query: 235 RVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQ 294
RV+D+RT NQ IF IQ+ + FR+FLLS +F EIHTPK+ SSEGGS VF++ Y
Sbjct: 241 RVLDLRTPTNQAIFDIQAGICQAFREFLLSNSFNEIHTPKMSGASSEGGSNVFKIQYFKT 300
Query: 295 SACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEV 354
L+QSPQL+KQM I D RVFE GPVFRAEDS T+RH+ EFTGLD+EM +HY EV
Sbjct: 301 DGFLSQSPQLYKQMLIAADRERVFEIGPVFRAEDSNTYRHMTEFTGLDLEMAFNEHYHEV 360
Query: 355 MDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKY-KPKTLRLTFEEGVQMLKDAGVE 413
M+ +++LF+ IF + K++ V +QYP E +R F++ V++LK+AG
Sbjct: 361 MEFIEKLFLYIFKTIREKYAKQVAVVRQQYPSEDFILPDADRIRFHFKDAVKLLKEAGYR 420
Query: 414 I------------------DP-LGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFY 454
DP D +T ER LGQ+V EKY T+FY++ +YP +VRPFY
Sbjct: 421 KQLVPGQKVPEDEEFHYCEDPEFDDFSTPEERALGQIVREKYHTDFYVIDKYPSSVRPFY 480
Query: 455 TMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKT-ISTYIDSFRY 513
TMP ++ YSNS+D F++G+EI+SGAQRIH PE L ER +A G+ + YID+F
Sbjct: 481 TMPDPEDPRYSNSYDFFMKGQEIMSGAQRIHDPELLVERMKALGVSPDVGLQQYIDAFAI 540
Query: 514 GAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
G PPH G G+GLERVVM + L NIR S +PRDP R+ P
Sbjct: 541 GCPPHAGGGIGLERVVMFYLNLPNIRLASSFPRDPKRLLP 580
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|Q8SRQ8|SYDC_ENCCU Probable aspartate--tRNA ligase, cytoplasmic OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU06_0790 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 325 bits (834), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 185/461 (40%), Positives = 279/461 (60%), Gaps = 11/461 (2%)
Query: 98 LNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPD-SVSKEMVRF--V 154
L+GSL + V +RG V + G K F+V+R+ TVQC+ D S M F +
Sbjct: 19 LDGSLDGRCVSVRGFVFKSSCTG-KYIFIVLRDGGCTVQCMCEKPTDGSGGLTMPEFSSL 77
Query: 155 RSLSNESIVDVIGVVSVPDVEIKGATQQ-VEVQIKKLYCVSRAAKT-PITIEDASRSEAE 212
R +++ES +++ G V +EI G +++ +EV+I +S A K+ P ++D S + E
Sbjct: 78 RKVTHESYIEIRGRVVKQGMEISGCSKKDIEVRILGFRVLSIADKSLPFAMKDVSATAEE 137
Query: 213 IEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHT 272
EK L V RL+NR +D+R + FR+ V FR +L F+EI T
Sbjct: 138 REKNP----TLQNVAYHIRLDNRAMDLRAPQTRATFRVVDGVMFFFRTYLRQNGFMEIKT 193
Query: 273 PKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTH 332
KLI SSEGG+ +F +DY + A +AQSPQL+KQM+I G F RV+E G V+RAE+S +
Sbjct: 194 SKLIGSSSEGGANLFSVDYFKRKAFMAQSPQLYKQMAIVGGFKRVYEIGHVYRAEESNIN 253
Query: 333 RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYK 392
R+L EF GLD+EMEI Y++V+ + + V+IFD L +ELE + + FE LKY+
Sbjct: 254 RYLSEFVGLDMEMEICTDYNDVIRFIHSMLVSIFDNLKKEYGEELETIRAFHAFEDLKYR 313
Query: 393 PKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRP 452
+ LT E V +L + GVE+ D N+ESE+KLG +V +G + +++ YP++ RP
Sbjct: 314 RDPVVLTHRECVDLLLNEGVEMGYEDDFNSESEKKLGSVVRRMHGVDIFVIKDYPISTRP 373
Query: 453 FYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFR 512
FYT + + + S+D +RG+EI+SGAQR+ I + L + + GI ++ Y++SF+
Sbjct: 374 FYTYRDEEKGI-TRSYDFILRGQEILSGAQRVSIYKDLVKYVEEHGISPSSLGGYLESFK 432
Query: 513 YGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
YGAPPHGG G+GLER++ + G+ +IR SL+PRDP R+ P
Sbjct: 433 YGAPPHGGCGIGLERLMKAYFGMGDIRCFSLFPRDPNRLYP 473
|
Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 553 | ||||||
| 357437181 | 541 | Aspartyl-tRNA synthetase [Medicago trunc | 0.920 | 0.940 | 0.767 | 0.0 | |
| 224087415 | 530 | predicted protein [Populus trichocarpa] | 0.956 | 0.998 | 0.750 | 0.0 | |
| 356552406 | 543 | PREDICTED: aspartyl-tRNA synthetase, cyt | 0.956 | 0.974 | 0.760 | 0.0 | |
| 449437092 | 545 | PREDICTED: aspartate--tRNA ligase, cytop | 0.915 | 0.928 | 0.767 | 0.0 | |
| 449505487 | 545 | PREDICTED: aspartate--tRNA ligase, cytop | 0.915 | 0.928 | 0.765 | 0.0 | |
| 356564011 | 544 | PREDICTED: aspartyl-tRNA synthetase, cyt | 0.916 | 0.931 | 0.767 | 0.0 | |
| 255564914 | 540 | aspartyl-tRNA synthetase, putative [Rici | 0.958 | 0.981 | 0.758 | 0.0 | |
| 225429870 | 544 | PREDICTED: aspartyl-tRNA synthetase, cyt | 0.978 | 0.994 | 0.723 | 0.0 | |
| 30688944 | 558 | aspartyl-tRNA synthetase [Arabidopsis th | 1.0 | 0.991 | 0.688 | 0.0 | |
| 297802914 | 557 | hypothetical protein ARALYDRAFT_491623 [ | 0.974 | 0.967 | 0.700 | 0.0 |
| >gi|357437181|ref|XP_003588866.1| Aspartyl-tRNA synthetase [Medicago truncatula] gi|355477914|gb|AES59117.1| Aspartyl-tRNA synthetase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 829 bits (2141), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/520 (76%), Positives = 445/520 (85%), Gaps = 11/520 (2%)
Query: 35 KEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTV 94
+++RR+E AA SA S LS+E++ PLA NYG VPL ELQS N +WT
Sbjct: 32 EKQRRREVAAATSATSTLSVEDD-PLAVNYGIVPLIELQS---------KTPANVNDWTR 81
Query: 95 VGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV 154
V ALN SL++++VLIRGR RPVG K+AF+V+RE TVQCL +PD VS +MV+F
Sbjct: 82 VEALNDSLENKQVLIRGRAQAIRPVGKKMAFLVIRENGFTVQCLVQAQPDLVSPQMVKFA 141
Query: 155 RSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEI 213
+LS ESIVDV GVVS+P IKGATQQ+E+Q++KLYCVS+A T PI IEDA+RSE EI
Sbjct: 142 AALSRESIVDVEGVVSIPAAPIKGATQQIEIQVRKLYCVSKAIPTLPINIEDAARSEVEI 201
Query: 214 EKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTP 273
EKA + G QL RVNQDTRLN RV+D+RT ANQGIFRIQSQVGN+FRQFLL+E+FVEIHTP
Sbjct: 202 EKAIQAGEQLVRVNQDTRLNFRVLDLRTPANQGIFRIQSQVGNVFRQFLLAESFVEIHTP 261
Query: 274 KLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHR 333
KLIAGSSEGG+AVFRLDYKGQ ACLAQSPQLHKQMSICGDFGRVFE GPVFRAEDS+THR
Sbjct: 262 KLIAGSSEGGAAVFRLDYKGQPACLAQSPQLHKQMSICGDFGRVFEIGPVFRAEDSFTHR 321
Query: 334 HLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKP 393
HLCEFTGLDVEMEIKKHY EVMD+VD+LFV +FD LN CKK+LEAVA QYPFEPLKY P
Sbjct: 322 HLCEFTGLDVEMEIKKHYFEVMDVVDKLFVAMFDTLNTKCKKDLEAVANQYPFEPLKYLP 381
Query: 394 KTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPF 453
TLRLT+EEG+QMLK+ GVEI+P GDLNTE+ERKLGQLVLEKYGTEFYILHRYPLAVRPF
Sbjct: 382 NTLRLTYEEGIQMLKEVGVEIEPFGDLNTEAERKLGQLVLEKYGTEFYILHRYPLAVRPF 441
Query: 454 YTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRY 513
YTMPC+DN YSNSFDVFIRGEEIISGAQRIH+PEFL ERAQACGI+VKTIS YIDSFRY
Sbjct: 442 YTMPCYDNPNYSNSFDVFIRGEEIISGAQRIHVPEFLEERAQACGIEVKTISAYIDSFRY 501
Query: 514 GAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
G PPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP
Sbjct: 502 GVPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 541
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224087415|ref|XP_002308157.1| predicted protein [Populus trichocarpa] gi|222854133|gb|EEE91680.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 827 bits (2135), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/541 (75%), Positives = 452/541 (83%), Gaps = 12/541 (2%)
Query: 14 VDSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQ 73
++ +Q K +K+ +K++ RK AA AAS+LSIEE+ PLA NYG++PLQ+LQ
Sbjct: 1 MNPQNQRAKKLQRRKQQSKRSYVAVRKPLWPAA-AASSLSIEED-PLAANYGNIPLQDLQ 58
Query: 74 SVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVS 133
S + + + WT VG L LK++EVLIRGR TTR VG +AFVVVRE+
Sbjct: 59 SKVE---------ADLKAWTQVGDLTHELKEKEVLIRGRAQTTRAVGKNMAFVVVREKGF 109
Query: 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCV 193
TVQC+ T +PD VSK+MV+F LS ESIVD+ GVVSVP + IKG TQQVE+Q+ KLYCV
Sbjct: 110 TVQCVVTARPDVVSKQMVKFAAGLSRESIVDIHGVVSVPSIAIKGTTQQVEIQVSKLYCV 169
Query: 194 SRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQS 252
+A T PI IEDASRSE EIE+A + G QL RVNQDTRLN RV+D RT ANQGIFRIQ
Sbjct: 170 DKAMPTLPINIEDASRSEKEIEEALEAGEQLVRVNQDTRLNYRVLDFRTSANQGIFRIQC 229
Query: 253 QVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICG 312
QV NIFRQFLLSE+FVEIHTPKLIAGSSEGGSAVF+LDYKGQ+ACLAQSPQLHKQM+ICG
Sbjct: 230 QVCNIFRQFLLSEDFVEIHTPKLIAGSSEGGSAVFKLDYKGQAACLAQSPQLHKQMAICG 289
Query: 313 DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNV 372
DFGRVFE GPVFRAEDSYTHRHLCEFTGLDVEMEIK+HY+EVMDIVD LFVT+FD LN
Sbjct: 290 DFGRVFEIGPVFRAEDSYTHRHLCEFTGLDVEMEIKQHYTEVMDIVDHLFVTMFDHLNKK 349
Query: 373 CKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLV 432
C K LEAV +QYPFEPLKY PKTLRL FEEGVQMLK+AGVEIDP GDLNTESERKLGQLV
Sbjct: 350 CSKYLEAVGRQYPFEPLKYLPKTLRLRFEEGVQMLKEAGVEIDPYGDLNTESERKLGQLV 409
Query: 433 LEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAE 492
LEKYGTEFYILHRYPLAVRPFYTMPC+D+ YSNSFDVFIRGEEIISGAQR+H+PEFL E
Sbjct: 410 LEKYGTEFYILHRYPLAVRPFYTMPCYDDPKYSNSFDVFIRGEEIISGAQRVHVPEFLVE 469
Query: 493 RAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIA 552
RAQACGIDV TISTYIDSFRYGAPPHGGFG GLERVVMLFCGLNNIRKTSL+PRDPLRIA
Sbjct: 470 RAQACGIDVSTISTYIDSFRYGAPPHGGFGAGLERVVMLFCGLNNIRKTSLFPRDPLRIA 529
Query: 553 P 553
P
Sbjct: 530 P 530
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552406|ref|XP_003544559.1| PREDICTED: aspartyl-tRNA synthetase, cytoplasmic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 825 bits (2132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/539 (76%), Positives = 450/539 (83%), Gaps = 10/539 (1%)
Query: 16 SSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSV 75
SS +SKKAAKKEAAK K RR+E A++A + LS++EE PL NYGDVPL ELQS
Sbjct: 14 SSEAQVSKKAAKKEAAKLEKLRRRQEIATASAATANLSVDEEDPLGGNYGDVPLVELQSK 73
Query: 76 NDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTV 135
G EWT V AL G+L+++ VLIRGR RPVG K+AF+V+RE TV
Sbjct: 74 TSADVG---------EWTRVEALGGALENRSVLIRGRAQAIRPVGKKMAFLVIRENGFTV 124
Query: 136 QCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSR 195
QCL + D+VS +MV+F +LS ESIVDV GVVS+P IKGATQQVE+Q++KLYCVSR
Sbjct: 125 QCLVQAQADTVSPQMVKFAAALSRESIVDVEGVVSIPSAPIKGATQQVEIQVRKLYCVSR 184
Query: 196 AAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQV 254
A T PI +EDA+RSE EIE A + G QL RVNQDTRLN RV+D+RT ANQGIFRIQSQV
Sbjct: 185 AVPTLPINLEDAARSEVEIETALQAGEQLVRVNQDTRLNFRVLDVRTPANQGIFRIQSQV 244
Query: 255 GNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDF 314
GN FRQFLLSE F EIHTPKLIAGSSEGG+AVFRLDYKGQ ACLAQSPQLHKQMSICGDF
Sbjct: 245 GNAFRQFLLSEGFCEIHTPKLIAGSSEGGAAVFRLDYKGQPACLAQSPQLHKQMSICGDF 304
Query: 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCK 374
GRVFE GPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY EVMDIVDRLFV +FD LN CK
Sbjct: 305 GRVFEIGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYFEVMDIVDRLFVAMFDSLNQNCK 364
Query: 375 KELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLE 434
K+LEAV QYPFEPLKY TLRLT+EEG+QMLKD GVEI+P GDLNTE+ERKLGQLV E
Sbjct: 365 KDLEAVGSQYPFEPLKYLRTTLRLTYEEGIQMLKDVGVEIEPYGDLNTEAERKLGQLVSE 424
Query: 435 KYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERA 494
KYGTEFYILHRYPLAVRPFYTMPC+DN YSNSFDVFIRGEEIISGAQR+H+PEFL +RA
Sbjct: 425 KYGTEFYILHRYPLAVRPFYTMPCYDNPAYSNSFDVFIRGEEIISGAQRVHVPEFLEQRA 484
Query: 495 QACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
ACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSL+PRDPLRIAP
Sbjct: 485 AACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPLRIAP 543
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437092|ref|XP_004136326.1| PREDICTED: aspartate--tRNA ligase, cytoplasmic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/517 (76%), Positives = 446/517 (86%), Gaps = 11/517 (2%)
Query: 38 RRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGA 97
RR++ AA SA S+L++E++ PL+ NYGDVPL +LQS E + WT VG+
Sbjct: 39 RRRQEAAAESAISSLNVEDD-PLSANYGDVPLSDLQS---------KEVKSIENWTQVGS 88
Query: 98 LNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSL 157
L LKD+ V++RGRV T R VG K+AF+VVRE+ TVQC+ + +P+ VS++MV++V L
Sbjct: 89 LTPELKDKYVILRGRVQTIRAVGKKMAFLVVREKGFTVQCVLSEQPELVSRQMVKYVDGL 148
Query: 158 SNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKA 216
S ESIVDV GVVSVP+V IKGA+QQVE+Q++K+YC+S+A T PI IEDA+RSEAEI+KA
Sbjct: 149 SRESIVDVEGVVSVPNVAIKGASQQVEIQVRKVYCISKAMPTLPINIEDAARSEAEIDKA 208
Query: 217 SKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLI 276
+ G QL RVNQDTRLN RV+D+RT ANQGIFRIQ QV +FRQFLL ENFVEIHTPKLI
Sbjct: 209 LQAGEQLVRVNQDTRLNYRVLDMRTPANQGIFRIQCQVSTMFRQFLLDENFVEIHTPKLI 268
Query: 277 AGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLC 336
GSSEGG++VFRLDYKGQ ACLAQSPQLHKQM+ICGDFGRVFE GPVFRAEDSYTHRHLC
Sbjct: 269 GGSSEGGASVFRLDYKGQPACLAQSPQLHKQMAICGDFGRVFEIGPVFRAEDSYTHRHLC 328
Query: 337 EFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTL 396
EFTGLDVEMEIK HYSEVMDIVDRLFV +FD LN CKK LEAV KQYPFEPLKY KTL
Sbjct: 329 EFTGLDVEMEIKTHYSEVMDIVDRLFVAMFDSLNEKCKKALEAVDKQYPFEPLKYLRKTL 388
Query: 397 RLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTM 456
RLTFEEG+QMLKDAGVEIDPLGDLNTE+ERKLGQLVLEKYGTEFYILHRYPLAVRPFYTM
Sbjct: 389 RLTFEEGIQMLKDAGVEIDPLGDLNTEAERKLGQLVLEKYGTEFYILHRYPLAVRPFYTM 448
Query: 457 PCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAP 516
PC+DN YSNSFDVFIRGEEIISGAQR+H+PEFLAERAQACGIDVKTI TYIDSFRYGAP
Sbjct: 449 PCYDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYGAP 508
Query: 517 PHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
PHGGFGVGLERVVMLFCGLNNIRKTSL+PRDP RIAP
Sbjct: 509 PHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 545
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449505487|ref|XP_004162485.1| PREDICTED: aspartate--tRNA ligase, cytoplasmic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 820 bits (2119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/517 (76%), Positives = 445/517 (86%), Gaps = 11/517 (2%)
Query: 38 RRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGA 97
RR++ AA SA S+L++E++ PL+ NYGDVPL +LQS E + WT VG+
Sbjct: 39 RRRQEAAAESAISSLNVEDD-PLSANYGDVPLSDLQS---------KEVKSIENWTQVGS 88
Query: 98 LNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSL 157
L LKD+ V++RGRV T R VG K+AF+VVRE+ TVQC+ + +P+ VS++MV++V L
Sbjct: 89 LTPELKDKYVILRGRVQTIRAVGKKMAFLVVREKGFTVQCVLSEQPELVSRQMVKYVDGL 148
Query: 158 SNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKA 216
S ESIVDV GVVSVP+V IKGA+QQVE+Q++K+YC+S+A T PI IEDA+RSEAEI+KA
Sbjct: 149 SRESIVDVEGVVSVPNVAIKGASQQVEIQVRKVYCISKAMPTLPINIEDAARSEAEIDKA 208
Query: 217 SKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLI 276
+ G QL RVNQDTRLN RV+D+RT ANQGIFRIQ QV +FRQFLL ENFVEIHTPKLI
Sbjct: 209 LQAGEQLVRVNQDTRLNYRVLDMRTPANQGIFRIQCQVSTMFRQFLLDENFVEIHTPKLI 268
Query: 277 AGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLC 336
GSSEGG++VFRLDYKGQ ACLAQSPQLHKQM+ICGDFGRVFE GPVFRAEDSYTHRHLC
Sbjct: 269 GGSSEGGASVFRLDYKGQPACLAQSPQLHKQMAICGDFGRVFEIGPVFRAEDSYTHRHLC 328
Query: 337 EFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTL 396
EFTGLDVEMEIK HYSEVMDIVDRLFV +FD LN CKK LEAV KQYPFEPLKY KTL
Sbjct: 329 EFTGLDVEMEIKTHYSEVMDIVDRLFVAMFDSLNEKCKKALEAVDKQYPFEPLKYLRKTL 388
Query: 397 RLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTM 456
RLTFEEG+QMLKDAGVEIDPLGDLNTE+ERKLGQLVLEKYGTEFYILHRYPLAVRPFYTM
Sbjct: 389 RLTFEEGIQMLKDAGVEIDPLGDLNTEAERKLGQLVLEKYGTEFYILHRYPLAVRPFYTM 448
Query: 457 PCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAP 516
PC+DN YSNSFDVFIRGEEIISGAQR+H+PEFLAE AQACGIDVKTI TYIDSFRYGAP
Sbjct: 449 PCYDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAECAQACGIDVKTIETYIDSFRYGAP 508
Query: 517 PHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
PHGGFGVGLERVVMLFCGLNNIRKTSL+PRDP RIAP
Sbjct: 509 PHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 545
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356564011|ref|XP_003550250.1| PREDICTED: aspartyl-tRNA synthetase, cytoplasmic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/517 (76%), Positives = 439/517 (84%), Gaps = 10/517 (1%)
Query: 38 RRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGA 97
RR+E AA++A + LS++EE PL NYGDVPL ELQS G EWT V A
Sbjct: 37 RRQEIAAASAATANLSVDEEDPLGGNYGDVPLVELQSKTPSDVG---------EWTRVEA 87
Query: 98 LNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSL 157
L G+L++ VLIRGR RPVG K+AF+V+RE TVQCL +PD+VS +MV+F +L
Sbjct: 88 LGGALENNSVLIRGRAQAIRPVGKKMAFLVIRENGFTVQCLVQAQPDTVSAQMVKFAAAL 147
Query: 158 SNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKA 216
S ESIVDV GVVSVP IKGATQQVE+Q++KLYCVSRA T PI +EDA+RSE EIEKA
Sbjct: 148 SRESIVDVEGVVSVPTAPIKGATQQVEIQVRKLYCVSRAVPTLPINLEDAARSEVEIEKA 207
Query: 217 SKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLI 276
+ G QL RVNQDTRLN RV+D+RT ANQGIFRIQSQVGN FRQFL+S+ F EIHTPKLI
Sbjct: 208 LQAGEQLVRVNQDTRLNFRVLDVRTPANQGIFRIQSQVGNAFRQFLVSQGFCEIHTPKLI 267
Query: 277 AGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLC 336
AGSSEGG+AVFRLDYKGQ ACLAQSPQLHKQMSICGDFGRVFE GPVFRAEDSYTHRHLC
Sbjct: 268 AGSSEGGAAVFRLDYKGQPACLAQSPQLHKQMSICGDFGRVFEIGPVFRAEDSYTHRHLC 327
Query: 337 EFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTL 396
EFTGLDVEMEIKKHY EVMD+VDRLFV +FD LN CKK+LEAV QYPFEPLKY KTL
Sbjct: 328 EFTGLDVEMEIKKHYFEVMDLVDRLFVAMFDSLNQNCKKDLEAVGSQYPFEPLKYLRKTL 387
Query: 397 RLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTM 456
RLT+EEG+QMLKD GVEI+P GDLNTE+ERKLGQLVLEKYGTEFYILHRYPLA+RPFYTM
Sbjct: 388 RLTYEEGIQMLKDVGVEIEPYGDLNTEAERKLGQLVLEKYGTEFYILHRYPLAIRPFYTM 447
Query: 457 PCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAP 516
PC+DN YSNSFDVFIRGEEIISGAQR+H+PEFL +RA ACGIDVKTIS+YIDSFRYGAP
Sbjct: 448 PCYDNPAYSNSFDVFIRGEEIISGAQRVHVPEFLEQRAAACGIDVKTISSYIDSFRYGAP 507
Query: 517 PHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
PHGGFGVGLERVVMLFCGLNNIRKTSL+PRDPLRIAP
Sbjct: 508 PHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPLRIAP 544
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255564914|ref|XP_002523450.1| aspartyl-tRNA synthetase, putative [Ricinus communis] gi|223537278|gb|EEF38909.1| aspartyl-tRNA synthetase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/543 (75%), Positives = 465/543 (85%), Gaps = 13/543 (2%)
Query: 15 DSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASA--LSIE-EEGPLANNYGDVPLQE 71
+SS+Q+ SKKAAKKEAAK+ K RR+EA AAA+AA+A LS+E +E PL+ NYG+ PL +
Sbjct: 7 ESSAQTTSKKAAKKEAAKQEKLRRREEAAAAAAAAAAAALSMEDQEDPLSGNYGNTPLSD 66
Query: 72 LQSVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRER 131
LQS E + EWT VG LN LKD+E+LIRGR TTR VG +AFVVVR++
Sbjct: 67 LQS---------KEESDLSEWTRVGQLNEELKDKELLIRGRAQTTRAVGKNMAFVVVRQK 117
Query: 132 VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLY 191
TVQC+ TV+ D VS++MV+FV LS ESIVDV GVVSVP+ IKG TQQVEVQ++KLY
Sbjct: 118 GFTVQCVVTVQADLVSRQMVKFVAGLSRESIVDVRGVVSVPNSPIKGTTQQVEVQVRKLY 177
Query: 192 CVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 250
C+S+A T PI IEDA+RSE EIE+A + G Q RVNQDTRLN RV+D+RT ANQGIFRI
Sbjct: 178 CISKAIPTLPINIEDAARSEKEIEEALQRGEQFVRVNQDTRLNYRVLDMRTPANQGIFRI 237
Query: 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSI 310
QS+VGNIFRQFLLSE+F EIHTPKLIAGSSEGGSAVF+LDYKGQ ACLAQSPQLHKQM+I
Sbjct: 238 QSEVGNIFRQFLLSEDFDEIHTPKLIAGSSEGGSAVFKLDYKGQPACLAQSPQLHKQMAI 297
Query: 311 CGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLN 370
CGD RVFE GPVFRAEDSYTHRHLCEF GLDVEMEIKKHYSEVMDIVDRLFV +FD LN
Sbjct: 298 CGDKERVFEVGPVFRAEDSYTHRHLCEFVGLDVEMEIKKHYSEVMDIVDRLFVKMFDYLN 357
Query: 371 NVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQ 430
CKKEL+AV +QYPFEPLKY KTLRL FEEG+QMLK+AGVE+DP GDLNTE+ERKLGQ
Sbjct: 358 EKCKKELDAVCRQYPFEPLKYLRKTLRLRFEEGIQMLKEAGVEVDPYGDLNTEAERKLGQ 417
Query: 431 LVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFL 490
LVLEKYGTEFYILHRYPLAVRPFYTMPC+D++ YSNSFDVFIRGEEIISGAQR+H+PE L
Sbjct: 418 LVLEKYGTEFYILHRYPLAVRPFYTMPCYDDAKYSNSFDVFIRGEEIISGAQRVHVPELL 477
Query: 491 AERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLR 550
ERA+ACGIDV TISTYIDSFRYGAPPHGGFGVGLERV+MLFCGLNNIRKTSL+PRDP+R
Sbjct: 478 EERAKACGIDVSTISTYIDSFRYGAPPHGGFGVGLERVIMLFCGLNNIRKTSLFPRDPMR 537
Query: 551 IAP 553
IAP
Sbjct: 538 IAP 540
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225429870|ref|XP_002283440.1| PREDICTED: aspartyl-tRNA synthetase, cytoplasmic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/556 (72%), Positives = 461/556 (82%), Gaps = 15/556 (2%)
Query: 1 MSTESEPPKVQEEVDSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSI---EEE 57
MS+ES+ P + V+ +++ SKKAAKKEAAK K+ RR+EA ++A++AS I +
Sbjct: 1 MSSESQTPNLS--VEDEAKAQSKKAAKKEAAKLEKQRRRQEAASSAASASVAGISIGDTP 58
Query: 58 GPLANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTR 117
PLA+NYGDVPL +LQS + V G +WT +GAL LKDQ+VLIRGR T R
Sbjct: 59 DPLASNYGDVPLLDLQS----------KEVTGLKWTDIGALTEDLKDQKVLIRGRAQTIR 108
Query: 118 PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK 177
VG +AF+VVR+ TVQC+ TV PD VS+ MV++ LS ES VD+ G++SVP V IK
Sbjct: 109 AVGKNIAFLVVRQMGFTVQCVLTVAPDLVSRHMVKYATGLSRESHVDIEGIISVPGVPIK 168
Query: 178 GATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVI 237
GATQQVEVQ++KLY +S+A PI IEDA+RSE+EIEKA + G QL RVNQDTRLN RV+
Sbjct: 169 GATQQVEVQVRKLYGISKAENLPINIEDAARSESEIEKALQAGEQLVRVNQDTRLNYRVL 228
Query: 238 DIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSAC 297
D+RT ANQ IFR+Q QV NIFRQFLLSE FV IHTPKLI GSSEGGSAVFRLDYKGQ AC
Sbjct: 229 DLRTPANQAIFRVQCQVENIFRQFLLSEGFVGIHTPKLIGGSSEGGSAVFRLDYKGQPAC 288
Query: 298 LAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDI 357
LAQSPQLHKQM+ICGDFGRVFE GPVFRAEDS+THRHLCEFTGLDVEMEIK+HY EVMDI
Sbjct: 289 LAQSPQLHKQMAICGDFGRVFEIGPVFRAEDSFTHRHLCEFTGLDVEMEIKEHYFEVMDI 348
Query: 358 VDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPL 417
VDRLFV +FD LN CKKELEA+ +QYPFEPLKY KTLRL F+EGVQMLK+ G+E+DP
Sbjct: 349 VDRLFVAMFDSLNENCKKELEAIERQYPFEPLKYLRKTLRLPFQEGVQMLKEVGMEVDPY 408
Query: 418 GDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEI 477
GDLNTE+ERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMP +D+ LYSNSFDVFIRGEEI
Sbjct: 409 GDLNTEAERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPSYDDPLYSNSFDVFIRGEEI 468
Query: 478 ISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNN 537
ISGAQR+H+P+FL +RA+ACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFC LNN
Sbjct: 469 ISGAQRVHVPDFLEKRAEACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCALNN 528
Query: 538 IRKTSLYPRDPLRIAP 553
IRKTSL+PRDP RIAP
Sbjct: 529 IRKTSLFPRDPTRIAP 544
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30688944|ref|NP_849558.1| aspartyl-tRNA synthetase [Arabidopsis thaliana] gi|30688949|ref|NP_194847.3| aspartyl-tRNA synthetase [Arabidopsis thaliana] gi|7270020|emb|CAB79836.1| aspartate--tRNA ligase-like protein [Arabidopsis thaliana] gi|222424631|dbj|BAH20270.1| AT4G31180 [Arabidopsis thaliana] gi|332660472|gb|AEE85872.1| aspartyl-tRNA synthetase [Arabidopsis thaliana] gi|332660473|gb|AEE85873.1| aspartyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/558 (68%), Positives = 447/558 (80%), Gaps = 5/558 (0%)
Query: 1 MSTESEPPKVQEEV---DSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEE 57
MS+ESE P + + S + SKKAAKKEAAK K RR+E E A +++S+EE
Sbjct: 1 MSSESEIPPLSSSTAAAEESGEKTSKKAAKKEAAKLEKLRRRQEQEEATRRTASISLEEN 60
Query: 58 GPLANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTR 117
+NNYGDV L ELQS DP+ GKW EAV G+EWT V L + + EVLIRGRVHT R
Sbjct: 61 DEFSNNYGDVTLTELQSSADPKAGKWIEAVEGKEWTDVSDLVEEMLESEVLIRGRVHTNR 120
Query: 118 PVGNKLAFVVVRERVSTVQCLATVKPDS-VSKEMVRFVRSLSNESIVDVIGVVSVPDVEI 176
P NKL FVV+RE STVQC+ + + V MV++++ LS ES VDVIGVV++P +
Sbjct: 121 PTSNKLGFVVLRESGSTVQCVVSQSEKTKVGANMVKYLKQLSRESFVDVIGVVTLPKEPL 180
Query: 177 KGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNR 235
G TQQVE+Q++K+YC++++ AK P+++EDA+RSEA+IE + + RVNQDTRLN R
Sbjct: 181 TGTTQQVEIQVRKVYCINKSLAKLPLSVEDAARSEADIEASLQTPSPAARVNQDTRLNYR 240
Query: 236 VIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQS 295
V+D+RT ANQ IF++Q +V FR+ L +NFV IHTPKL+AGSSEGGSAVFRL+YKGQ
Sbjct: 241 VLDLRTPANQAIFQLQYEVEYAFREKLRFKNFVGIHTPKLMAGSSEGGSAVFRLEYKGQP 300
Query: 296 ACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVM 355
ACLAQSPQLHKQM+ICGD RVFE GPVFRAEDS+THRHLCEF GLDVEMEI+KHYSE+M
Sbjct: 301 ACLAQSPQLHKQMAICGDLRRVFEVGPVFRAEDSFTHRHLCEFVGLDVEMEIRKHYSEIM 360
Query: 356 DIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEID 415
D+VD LFV IF LN CKKEL+AV KQYPFEPLK+ PKTLRLTFEEGVQMLK+AGVE+D
Sbjct: 361 DLVDELFVFIFTSLNERCKKELQAVGKQYPFEPLKFLPKTLRLTFEEGVQMLKEAGVEVD 420
Query: 416 PLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGE 475
PLGDLNTESERKLGQLVLEKY TEFYILHRYP AVRPFYTM C DN LYSNSFDVFIRGE
Sbjct: 421 PLGDLNTESERKLGQLVLEKYNTEFYILHRYPKAVRPFYTMTCADNPLYSNSFDVFIRGE 480
Query: 476 EIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGL 535
EIISGAQR+HIPE L +RA CGIDVKTISTYIDSFRYGAP HGGFGVGLERVVMLFC L
Sbjct: 481 EIISGAQRVHIPEVLEQRAGECGIDVKTISTYIDSFRYGAPLHGGFGVGLERVVMLFCAL 540
Query: 536 NNIRKTSLYPRDPLRIAP 553
NNIRKTSL+PRDP R++P
Sbjct: 541 NNIRKTSLFPRDPQRLSP 558
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297802914|ref|XP_002869341.1| hypothetical protein ARALYDRAFT_491623 [Arabidopsis lyrata subsp. lyrata] gi|297315177|gb|EFH45600.1| hypothetical protein ARALYDRAFT_491623 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/541 (70%), Positives = 440/541 (81%), Gaps = 2/541 (0%)
Query: 15 DSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQS 74
+ S + ISKKAAKKEAAK K RR+E + A +++S+EE ++NYGDV L ELQS
Sbjct: 17 EESGEKISKKAAKKEAAKLEKLRRRQEQDEATRKTASMSLEENEEYSSNYGDVTLNELQS 76
Query: 75 VNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVST 134
DP+ GKW EAV G++WT V L + + EVLIRGRVH RP +KL F+++RE ST
Sbjct: 77 TADPKAGKWREAVEGKDWTDVSDLVEEMVESEVLIRGRVHINRPTSSKLGFLILRESGST 136
Query: 135 VQCLA-TVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCV 193
VQC+ + V MV++ LS ES VDVIGVV +P + G TQQVE+Q++K+YC+
Sbjct: 137 VQCVVRQSEKTKVGANMVKYSEQLSRESFVDVIGVVVLPKEPLTGTTQQVEIQVRKVYCI 196
Query: 194 SRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQS 252
++A AK P+++EDA+RSEA+IEK+ + RVNQDTRLN+RV+D+RT ANQ IFR+Q
Sbjct: 197 NKALAKLPLSVEDAARSEADIEKSLQTEKPAARVNQDTRLNHRVLDLRTPANQAIFRLQC 256
Query: 253 QVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICG 312
QV N FR+ L+ ++FV IHTPKL+AGSSEGGSAVFRL+YKGQ ACLAQSPQLHKQM+ICG
Sbjct: 257 QVENSFREKLIFKDFVGIHTPKLMAGSSEGGSAVFRLEYKGQPACLAQSPQLHKQMAICG 316
Query: 313 DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNV 372
D RVFE GPVFRAEDS+THRHLCEF GLDVEMEI+KHYSE+MD+VD LFV IF LN
Sbjct: 317 DLRRVFEVGPVFRAEDSFTHRHLCEFVGLDVEMEIRKHYSEIMDLVDELFVFIFTSLNEK 376
Query: 373 CKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLV 432
CKKELEAV KQYPFEPLK+ PKTLRLTFEEGVQMLK+AGVE+DPLGDLNTESERKLGQLV
Sbjct: 377 CKKELEAVRKQYPFEPLKFLPKTLRLTFEEGVQMLKEAGVEVDPLGDLNTESERKLGQLV 436
Query: 433 LEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAE 492
LEKY TEFYILHRYP AVRPFYTM C DN LYSNSFDVFIRGEEIISGAQR+HIPE L +
Sbjct: 437 LEKYNTEFYILHRYPKAVRPFYTMTCADNPLYSNSFDVFIRGEEIISGAQRVHIPEILEQ 496
Query: 493 RAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIA 552
RA GIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSL+PRDP R+A
Sbjct: 497 RAGEFGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRLA 556
Query: 553 P 553
P
Sbjct: 557 P 557
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 553 | ||||||
| TAIR|locus:2126306 | 558 | AT4G31180 [Arabidopsis thalian | 0.891 | 0.883 | 0.703 | 2.4e-186 | |
| TAIR|locus:2116397 | 532 | AT4G26870 [Arabidopsis thalian | 0.866 | 0.900 | 0.659 | 5.2e-168 | |
| FB|FBgn0002069 | 531 | Aats-asp "Aspartyl-tRNA synthe | 0.828 | 0.862 | 0.508 | 5.2e-120 | |
| ZFIN|ZDB-GENE-061110-135 | 531 | dars "aspartyl-tRNA synthetase | 0.801 | 0.834 | 0.517 | 6.9e-118 | |
| UNIPROTKB|P14868 | 501 | DARS "Aspartate--tRNA ligase, | 0.801 | 0.884 | 0.522 | 7.9e-117 | |
| MGI|MGI:2442544 | 501 | Dars "aspartyl-tRNA synthetase | 0.801 | 0.884 | 0.515 | 3.4e-116 | |
| UNIPROTKB|Q5ZJQ6 | 503 | DARS "Uncharacterized protein" | 0.801 | 0.880 | 0.511 | 1.2e-115 | |
| UNIPROTKB|E2RNQ8 | 501 | DARS "Uncharacterized protein" | 0.801 | 0.884 | 0.515 | 1.9e-115 | |
| RGD|621167 | 501 | Dars "aspartyl-tRNA synthetase | 0.801 | 0.884 | 0.511 | 1.9e-115 | |
| UNIPROTKB|F1S0D9 | 501 | DARS "Uncharacterized protein" | 0.801 | 0.884 | 0.511 | 6.4e-115 |
| TAIR|locus:2126306 AT4G31180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1807 (641.2 bits), Expect = 2.4e-186, P = 2.4e-186
Identities = 348/495 (70%), Positives = 400/495 (80%)
Query: 61 ANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVG 120
+NNYGDV L ELQS DP+ GKW EAV G+EWT V L + + EVLIRGRVHT RP
Sbjct: 64 SNNYGDVTLTELQSSADPKAGKWIEAVEGKEWTDVSDLVEEMLESEVLIRGRVHTNRPTS 123
Query: 121 NKLAFVVVRERVSTVQCLATVKPDS-VSKEMVRFVRSLSNEXXXXXXXXXXXXXXEIKGA 179
NKL FVV+RE STVQC+ + + V MV++++ LS E + G
Sbjct: 124 NKLGFVVLRESGSTVQCVVSQSEKTKVGANMVKYLKQLSRESFVDVIGVVTLPKEPLTGT 183
Query: 180 TQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVID 238
TQQVE+Q++K+YC++++ AK P+++EDA+RSEA+IE + + RVNQDTRLN RV+D
Sbjct: 184 TQQVEIQVRKVYCINKSLAKLPLSVEDAARSEADIEASLQTPSPAARVNQDTRLNYRVLD 243
Query: 239 IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACL 298
+RT ANQ IF++Q +V FR+ L +NFV IHTPKL+AGSSEGGSAVFRL+YKGQ ACL
Sbjct: 244 LRTPANQAIFQLQYEVEYAFREKLRFKNFVGIHTPKLMAGSSEGGSAVFRLEYKGQPACL 303
Query: 299 AQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIV 358
AQSPQLHKQM+ICGD RVFE GPVFRAEDS+THRHLCEF GLDVEMEI+KHYSE+MD+V
Sbjct: 304 AQSPQLHKQMAICGDLRRVFEVGPVFRAEDSFTHRHLCEFVGLDVEMEIRKHYSEIMDLV 363
Query: 359 DRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLG 418
D LFV IF LN CKKEL+AV KQYPFEPLK+ PKTLRLTFEEGVQMLK+AGVE+DPLG
Sbjct: 364 DELFVFIFTSLNERCKKELQAVGKQYPFEPLKFLPKTLRLTFEEGVQMLKEAGVEVDPLG 423
Query: 419 DLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEII 478
DLNTESERKLGQLVLEKY TEFYILHRYP AVRPFYTM C DN LYSNSFDVFIRGEEII
Sbjct: 424 DLNTESERKLGQLVLEKYNTEFYILHRYPKAVRPFYTMTCADNPLYSNSFDVFIRGEEII 483
Query: 479 SGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNI 538
SGAQR+HIPE L +RA CGIDVKTISTYIDSFRYGAP HGGFGVGLERVVMLFC LNNI
Sbjct: 484 SGAQRVHIPEVLEQRAGECGIDVKTISTYIDSFRYGAPLHGGFGVGLERVVMLFCALNNI 543
Query: 539 RKTSLYPRDPLRIAP 553
RKTSL+PRDP R++P
Sbjct: 544 RKTSLFPRDPQRLSP 558
|
|
| TAIR|locus:2116397 AT4G26870 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1634 (580.3 bits), Expect = 5.2e-168, P = 5.2e-168
Identities = 326/494 (65%), Positives = 379/494 (76%)
Query: 61 ANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVG 120
++NYGDV ELQS AV G+E T V L + EV IRGR+H R VG
Sbjct: 53 SSNYGDVTTNELQS-----------AVEGKELTDVSNLVEEIVGSEVSIRGRLHKNRLVG 101
Query: 121 NKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEXXXXXXXXXXXXXXEIKGAT 180
KL FV++RE TVQC+ V+ V M++FV+ LS E + G T
Sbjct: 102 TKL-FVILRESGFTVQCV--VEETRVGANMIKFVKQLSRESVVELIGVVSHPKKPLTGTT 158
Query: 181 QQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDI 239
QQVE+ ++K+YC+SR+ P+ +EDA+RSE++IEK+ K+G Q RV QDTRLNNRV+DI
Sbjct: 159 QQVEIHVRKMYCLSRSLPNLPLVVEDAARSESDIEKSGKDGKQAARVLQDTRLNNRVLDI 218
Query: 240 RTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLA 299
RT ANQ IFRIQ QV FR++L S+ F+EIHTPKLIAGSSEGGSAVFRLDYKGQ ACLA
Sbjct: 219 RTPANQAIFRIQCQVQIAFREYLQSKGFLEIHTPKLIAGSSEGGSAVFRLDYKGQPACLA 278
Query: 300 QSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVD 359
QSPQLHKQM+ICGD RVFE GPVFRAEDS+THRHLCEF GLDVEMEI+ HYSE+MD+V
Sbjct: 279 QSPQLHKQMAICGDMRRVFEVGPVFRAEDSFTHRHLCEFVGLDVEMEIRMHYSEIMDLVG 338
Query: 360 RLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGD 419
LF IF + C KELE+V KQYPF+ LK+ P+TLRLTF EG+QMLK+AG E+DPLGD
Sbjct: 339 ELFPFIFTKIEERCPKELESVRKQYPFQSLKFLPQTLRLTFAEGIQMLKEAGEEVDPLGD 398
Query: 420 LNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIIS 479
LNTESERKLGQLVLEKY TEFY+LHRYP AVRPFYTMP ++S YSNSFDVFIRGEEI+S
Sbjct: 399 LNTESERKLGQLVLEKYKTEFYMLHRYPSAVRPFYTMPYENDSNYSNSFDVFIRGEEIMS 458
Query: 480 GAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIR 539
GAQRIH PE L +RA+ CGIDVKTISTYID+FRYGAPPHGGFGVGLERVVML C LNNIR
Sbjct: 459 GAQRIHDPELLEKRARECGIDVKTISTYIDAFRYGAPPHGGFGVGLERVVMLLCALNNIR 518
Query: 540 KTSLYPRDPLRIAP 553
KTSL+PRD R+ P
Sbjct: 519 KTSLFPRDSQRLTP 532
|
|
| FB|FBgn0002069 Aats-asp "Aspartyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1181 (420.8 bits), Expect = 5.2e-120, P = 5.2e-120
Identities = 237/466 (50%), Positives = 325/466 (69%)
Query: 90 REWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKE 149
R + V L+G + V +RGRVHT+R G K F+++R++ STVQC+ V D +SK+
Sbjct: 72 RNFVPVSELSGQVGKGLVWVRGRVHTSRAKG-KQCFLILRQQSSTVQCILAVG-DVISKQ 129
Query: 150 MVRFVRSLSNEXXXXXXXXXXXXXXEIKGATQQ-VEVQIKKLYCVSRA-AKTPITIEDAS 207
MV+F ++ E +I+ T+Q +E+ +++++ +S+A A+ P+ IEDAS
Sbjct: 130 MVKFAGNIPKESIIDIQAKPVAVSSKIESCTEQSLELSVEQIFVISQAKAQLPLQIEDAS 189
Query: 208 RSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENF 267
R E + A EG+ + RVNQDTRL+NRV+D+RT ANQ IFR+++ V +FR L + F
Sbjct: 190 RPE-NADDA--EGLNI-RVNQDTRLDNRVLDLRTPANQAIFRLEAGVCRLFRDILTEQGF 245
Query: 268 VEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAE 327
EIHTPK+I+ +SEGG+ VF + Y SA LAQSPQL+KQM+I DF +V+ G VFRAE
Sbjct: 246 TEIHTPKIISAASEGGANVFTVSYFKDSAYLAQSPQLYKQMAIAADFDKVYTVGAVFRAE 305
Query: 328 DSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFE 387
DS THRHL EF GLD+EM K HY EV+ + F +IF GL + KE+E+V +QY +
Sbjct: 306 DSNTHRHLTEFVGLDLEMAFKYHYHEVLHTIGNTFTSIFKGLRDKYAKEIESVGQQYKVD 365
Query: 388 PLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYP 447
K+ L L F +GV ML++AGVE DL+T +E+ LG+LV KY T+FYIL ++P
Sbjct: 366 AFKFLEPPLILQFADGVAMLREAGVETGDEEDLSTPNEKLLGRLVKAKYDTDFYILDKFP 425
Query: 448 LAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTY 507
LA+RPFYTMP +N +YSNS+D+F+RGEEI+SGAQRIH PE+L ERA+ GID I+ Y
Sbjct: 426 LAIRPFYTMPDPNNPVYSNSYDMFMRGEEILSGAQRIHDPEYLIERAKHHGIDTSKIAAY 485
Query: 508 IDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
I+SFRYG PPH G G+G+ERVVML+ GL+NIRKTS++PRDP R+ P
Sbjct: 486 IESFRYGCPPHAGGGIGMERVVMLYLGLDNIRKTSMFPRDPKRLTP 531
|
|
| ZFIN|ZDB-GENE-061110-135 dars "aspartyl-tRNA synthetase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1161 (413.8 bits), Expect = 6.9e-118, P = 6.9e-118
Identities = 234/452 (51%), Positives = 314/452 (69%)
Query: 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEXXX 163
+Q++ +R R+HT+R G K F+V+R + TVQ L V D SK+MV+F +++ E
Sbjct: 87 EQQIWVRARIHTSRAKG-KQCFLVLRHQQFTVQALLAVG-DRASKQMVKFAANITKESII 144
Query: 164 XXXXXXXXXXXEIKGATQQ-VEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGV 221
+I+ +QQ VE+ +++++ +S++ A+ P+ +EDA R E E +EG
Sbjct: 145 DVEAVVKKVEQKIESCSQQDVELHVERIFVISQSEARLPLQLEDAVRPEGE---GDEEG- 200
Query: 222 QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 281
VNQDTRL+NRVID+RT +Q IFR+QS V +FR L+++ FVEI TPK+I+ +SE
Sbjct: 201 -RATVNQDTRLDNRVIDLRTTTSQAIFRLQSGVCQLFRDTLINKGFVEIQTPKIISAASE 259
Query: 282 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 341
GG+ VF + Y SA LAQSPQL+KQM IC DF +VF GPVFRAEDS THRHL EF GL
Sbjct: 260 GGANVFTVSYFKTSAYLAQSPQLYKQMCICADFDKVFCVGPVFRAEDSNTHRHLTEFVGL 319
Query: 342 DVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 401
D+EM HY EV+D + V IF GL + + E++ V KQYP EP K+ TLRL ++
Sbjct: 320 DIEMAFSYHYHEVIDSITDTMVQIFKGLRDRFQTEIQTVNKQYPSEPFKFLEPTLRLEYK 379
Query: 402 EGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDN 461
EG+ ML+ AGVE+ DL+T +E+ LG+LV EKY T+FY+L +YPLAVRPFYTMP N
Sbjct: 380 EGLAMLRAAGVEMGDEEDLSTPNEKLLGRLVKEKYDTDFYVLDKYPLAVRPFYTMPDPSN 439
Query: 462 SLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGF 521
YSNS+D+F+RGEEI+SGAQRIH + L ERA ID++ I YIDSFRYGAPPH G
Sbjct: 440 LKYSNSYDMFMRGEEILSGAQRIHDAQLLTERAMHHNIDLEKIKAYIDSFRYGAPPHAGG 499
Query: 522 GVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
G+GLERV ML+ GL+N+R+TS++PRDP R+ P
Sbjct: 500 GIGLERVTMLYLGLHNVRQTSMFPRDPKRLTP 531
|
|
| UNIPROTKB|P14868 DARS "Aspartate--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1151 (410.2 bits), Expect = 7.9e-117, P = 7.9e-117
Identities = 236/452 (52%), Positives = 312/452 (69%)
Query: 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEXXX 163
D+ V +R RVHT+R G K F+V+R++ VQ L V D SK+MV+F +++ E
Sbjct: 57 DEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVG-DHASKQMVKFAANINKESIV 114
Query: 164 XXXXXXXXXXXEIKGATQQ-VEVQIKKLYCVSRAA-KTPITIEDASRSEAEIEKASKEGV 221
+I TQQ VE+ ++K+Y +S A + P+ ++DA R EAE E+ EG
Sbjct: 115 DVEGVVRKVNQKIGSCTQQDVELHVQKIYVISLAEPRLPLQLDDAVRPEAEGEE---EG- 170
Query: 222 QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 281
VNQDTRL+NRVID+RT +Q +FR+QS + ++FR+ L+++ FVEI TPK+I+ +SE
Sbjct: 171 -RATVNQDTRLDNRVIDLRTSTSQAVFRLQSGICHLFRETLINKGFVEIQTPKIISAASE 229
Query: 282 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 341
GG+ VF + Y +A LAQSPQL+KQM IC DF +VF GPVFRAEDS THRHL EF GL
Sbjct: 230 GGANVFTVSYFKNNAYLAQSPQLYKQMCICADFEKVFSIGPVFRAEDSNTHRHLTEFVGL 289
Query: 342 DVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 401
D+EM HY EVM+ + V IF GL + E++ V KQ+P EP K+ TLRL +
Sbjct: 290 DIEMAFNYHYHEVMEEIADTMVQIFKGLQERFQTEIQTVNKQFPCEPFKFLEPTLRLEYC 349
Query: 402 EGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDN 461
E + ML++AGVE+ DL+T +E+ LG LV EKY T+FYIL +YPLAVRPFYTMP N
Sbjct: 350 EALAMLREAGVEMGDEDDLSTPNEKLLGHLVKEKYDTDFYILDKYPLAVRPFYTMPDPRN 409
Query: 462 SLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGF 521
SNS+D+F+RGEEI+SGAQRIH P+ L ERA GID++ I YIDSFR+GAPPH G
Sbjct: 410 PKQSNSYDMFMRGEEILSGAQRIHDPQLLTERALHHGIDLEKIKAYIDSFRFGAPPHAGG 469
Query: 522 GVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
G+GLERV MLF GL+N+R+TS++PRDP R+ P
Sbjct: 470 GIGLERVTMLFLGLHNVRQTSMFPRDPKRLTP 501
|
|
| MGI|MGI:2442544 Dars "aspartyl-tRNA synthetase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1145 (408.1 bits), Expect = 3.4e-116, P = 3.4e-116
Identities = 233/452 (51%), Positives = 312/452 (69%)
Query: 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEXXX 163
D V +R RVHT+R G K F+V+R++ VQ L V D SK+MV+F +++ E
Sbjct: 57 DDVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVG-DHASKQMVKFAANINKESII 114
Query: 164 XXXXXXXXXXXEIKGATQQ-VEVQIKKLYCVSRAA-KTPITIEDASRSEAEIEKASKEGV 221
+I TQQ VE+ ++K+Y +S A + P+ ++DA R E E E+ +
Sbjct: 115 DVEGVVRKVNQKIGSCTQQDVELHVQKIYVISLAEPRLPLQLDDAIRPEVEGEEDGRA-- 172
Query: 222 QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 281
VNQDTRL+NRVID+RT +Q IFR+QS + ++FR+ L+++ FVEI TPK+I+ +SE
Sbjct: 173 ---TVNQDTRLDNRVIDLRTSTSQAIFRLQSGICHLFRETLINKGFVEIQTPKIISAASE 229
Query: 282 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 341
GG+ VF + Y +A LAQSPQL+KQM IC DF +VF GPVFRAEDS THRHL EF GL
Sbjct: 230 GGANVFTVSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGL 289
Query: 342 DVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 401
D+EM HY EV++ + V IF GL + E++ V+KQ+P EP K+ TLRL +
Sbjct: 290 DIEMAFNYHYHEVVEEIADTLVQIFKGLQERFQTEIQTVSKQFPCEPFKFLEPTLRLEYC 349
Query: 402 EGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDN 461
E + ML++AGVE+D DL+T +E+ LG+LV EKY T+FY+L +YPLAVRPFYTMP N
Sbjct: 350 EALAMLREAGVEMDDEEDLSTPNEKLLGRLVKEKYDTDFYVLDKYPLAVRPFYTMPDPRN 409
Query: 462 SLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGF 521
SNS+D+F+RGEEI+SGAQRIH P+ L ERA GID++ I YIDSFR+GAPPH G
Sbjct: 410 PKQSNSYDMFMRGEEILSGAQRIHDPQLLTERALHHGIDLEKIKAYIDSFRFGAPPHAGG 469
Query: 522 GVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
G+GLERV MLF GL+N+R+TS++PRDP R+ P
Sbjct: 470 GIGLERVTMLFLGLHNVRQTSMFPRDPKRLTP 501
|
|
| UNIPROTKB|Q5ZJQ6 DARS "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1140 (406.4 bits), Expect = 1.2e-115, P = 1.2e-115
Identities = 231/452 (51%), Positives = 311/452 (68%)
Query: 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEXXX 163
D+ V +RGRVHT+R G K F+V+R++ +Q L V + SK+MV+F +++ E
Sbjct: 59 DEVVWVRGRVHTSRAKG-KQCFLVLRQQQFNIQALVAVGQHA-SKQMVKFAANINKESIV 116
Query: 164 XXXXXXXXXXXEIKGATQQ-VEVQIKKLYCVSRAA-KTPITIEDASRSEAEIEKASKEGV 221
+I G TQQ VE+ ++++Y +S A + P+ ++DA R E E E+ +
Sbjct: 117 DVEGVVRKAHQKIGGCTQQDVELHVQRIYVISLAEPRLPLQLDDAVRPEVEGEEDGRA-- 174
Query: 222 QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 281
VNQDTRL+NRVID+RT +Q +F +QS + +FR+ L+ + FVEI TPK+I+ +SE
Sbjct: 175 ---TVNQDTRLDNRVIDLRTSTSQAVFCLQSGICQLFRETLIRKGFVEIQTPKIISAASE 231
Query: 282 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 341
GG+ VF + Y SA LAQSPQL+KQM IC DF +VF GPVFRAEDS THRHL EF GL
Sbjct: 232 GGANVFTVSYFKSSAYLAQSPQLYKQMCICADFEKVFCVGPVFRAEDSNTHRHLTEFVGL 291
Query: 342 DVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 401
D+EM HY EV+D + V IF GL + E++ V KQ+P EP K+ TLRL +
Sbjct: 292 DIEMAFNYHYHEVVDEIADTLVQIFKGLQERFQAEIQMVNKQFPCEPFKFLEPTLRLEYR 351
Query: 402 EGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDN 461
E V ML++AG+E+ DL+T +E+ LG+LV EKY T+FYIL +YPLAVRPFYTMP N
Sbjct: 352 EAVAMLREAGIEMGDEEDLSTPNEKLLGRLVKEKYDTDFYILDKYPLAVRPFYTMPDPVN 411
Query: 462 SLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGF 521
SNS+D+F+RGEEI+SGAQRIH P+ L ERA+ GID++ I YIDSFR+GAPPH G
Sbjct: 412 PKNSNSYDMFMRGEEILSGAQRIHDPQLLTERAKHHGIDLEKIKAYIDSFRFGAPPHAGG 471
Query: 522 GVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
G+GLERV ML+ GL+N+R+TS++PRDP R+ P
Sbjct: 472 GIGLERVTMLYLGLHNVRQTSMFPRDPKRLTP 503
|
|
| UNIPROTKB|E2RNQ8 DARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1138 (405.7 bits), Expect = 1.9e-115, P = 1.9e-115
Identities = 233/452 (51%), Positives = 312/452 (69%)
Query: 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEXXX 163
D+ V +R RVHT+R G K F+V+R++ VQ L V D SK+MV+F +++ E
Sbjct: 57 DEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVG-DHASKQMVKFAANINKESIV 114
Query: 164 XXXXXXXXXXXEIKGATQQ-VEVQIKKLYCVSRAA-KTPITIEDASRSEAEIEKASKEGV 221
+I TQQ VE+ ++K+Y +S A + P+ ++DA R E E E+ EG
Sbjct: 115 DVEGVVRKVNQKIGSCTQQDVELHVQKIYVISLAEPRLPLQLDDAVRPEVEGEE---EG- 170
Query: 222 QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 281
VNQDTRL+NRVID+RT +Q +FR+QS + ++FR+ L+++ FVEI TPK+I+ +SE
Sbjct: 171 -RATVNQDTRLDNRVIDLRTSTSQAVFRLQSGICHLFRETLINKGFVEIQTPKIISAASE 229
Query: 282 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 341
GG+ VF + Y +A LAQSPQL+KQM IC DF +VF GPVFRAEDS THRHL EF GL
Sbjct: 230 GGANVFTVSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGL 289
Query: 342 DVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 401
D+EM HY EV++ + V IF GL + E++ V KQ+P EP K+ TLRL +
Sbjct: 290 DIEMAFNYHYHEVVEEIADTLVQIFKGLQKRFQTEIQTVNKQFPCEPFKFLEPTLRLEYC 349
Query: 402 EGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDN 461
E + ML++AG+E+ DL+T +E+ LG+LV EKY T+FYIL +YPLAVRPFYTMP N
Sbjct: 350 EALAMLREAGIEMGDEEDLSTPNEKLLGRLVKEKYDTDFYILDKYPLAVRPFYTMPDPRN 409
Query: 462 SLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGF 521
SNS+D+F+RGEEI+SGAQRIH P+ L ERA GID++ I YIDSFR+GAPPH G
Sbjct: 410 PKQSNSYDMFMRGEEILSGAQRIHDPQLLTERALHHGIDLEKIKAYIDSFRFGAPPHAGG 469
Query: 522 GVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
G+GLERV MLF GL+N+R+TS++PRDP R+ P
Sbjct: 470 GIGLERVTMLFLGLHNVRQTSMFPRDPKRLTP 501
|
|
| RGD|621167 Dars "aspartyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1138 (405.7 bits), Expect = 1.9e-115, P = 1.9e-115
Identities = 231/452 (51%), Positives = 311/452 (68%)
Query: 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEXXX 163
D+ V +R RVHT+R G K F+V+R++ VQ L V D SK+MV+F +++ E
Sbjct: 57 DEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVG-DHASKQMVKFAANINKESII 114
Query: 164 XXXXXXXXXXXEIKGATQQ-VEVQIKKLYCVSRAA-KTPITIEDASRSEAEIEKASKEGV 221
+I TQQ VE+ ++K+Y +S A + P+ ++DA R E E E+ +
Sbjct: 115 DVEGIVRKVNQKIGSCTQQDVELHVQKIYVISLAEPRLPLQLDDAIRPEVEGEEDGRA-- 172
Query: 222 QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 281
VNQDTRL+NR+ID+RT +Q IF +QS + ++FR+ L+++ FVEI TPK+I+ +SE
Sbjct: 173 ---TVNQDTRLDNRIIDLRTSTSQAIFHLQSGICHLFRETLINKGFVEIQTPKIISAASE 229
Query: 282 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 341
GG+ VF + Y +A LAQSPQL+KQM IC DF +VF GPVFRAEDS THRHL EF GL
Sbjct: 230 GGANVFTVSYFKSNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGL 289
Query: 342 DVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 401
D+EM HY EV++ + V IF GL + E++ V KQ+P EP K+ TLRL +
Sbjct: 290 DIEMAFNYHYHEVVEEIADTLVQIFKGLQERFQTEIQTVNKQFPCEPFKFLEPTLRLEYC 349
Query: 402 EGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDN 461
E + ML++AGVE+D DL+T +E+ LG+LV EKY T+FY+L +YPLAVRPFYTMP N
Sbjct: 350 EALAMLREAGVEMDDEEDLSTPNEKLLGRLVKEKYDTDFYVLDKYPLAVRPFYTMPDPRN 409
Query: 462 SLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGF 521
SNS+D+F+RGEEI+SGAQRIH P+ L ERA GID++ I YIDSFR+GAPPH G
Sbjct: 410 PKQSNSYDMFMRGEEILSGAQRIHDPQLLTERALHHGIDLEKIKAYIDSFRFGAPPHAGG 469
Query: 522 GVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
G+GLERV MLF GL+N+R+TS++PRDP R+ P
Sbjct: 470 GIGLERVTMLFLGLHNVRQTSMFPRDPKRLTP 501
|
|
| UNIPROTKB|F1S0D9 DARS "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1133 (403.9 bits), Expect = 6.4e-115, P = 6.4e-115
Identities = 231/452 (51%), Positives = 312/452 (69%)
Query: 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEXXX 163
D+ V +R RVHT+R G K F+V+R++ VQ L V D SK+MV+F +++ E
Sbjct: 57 DEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVG-DHASKQMVKFAANINKESIV 114
Query: 164 XXXXXXXXXXXEIKGATQQ-VEVQIKKLYCVSRAA-KTPITIEDASRSEAEIEKASKEGV 221
+I TQQ VE+ ++K+Y +S A + P+ ++DA R E E E+ EG
Sbjct: 115 DVEGVVRKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDDAVRPEVEGEE---EG- 170
Query: 222 QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 281
VNQDTRL+NR+ID+RT +Q +FR+QS + ++FR+ L+++ FVEI TPK+I+ +SE
Sbjct: 171 -RATVNQDTRLDNRIIDLRTSTSQAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASE 229
Query: 282 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 341
GG+ VF + Y +A LAQSPQL+KQM IC DF +VF GPVFRAEDS THRHL EF G+
Sbjct: 230 GGANVFTVSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGM 289
Query: 342 DVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 401
D+EM HY EV++ + V IF GL + E++ V KQ+P EP K+ TLRL +
Sbjct: 290 DIEMVFNYHYHEVVEEIADTLVQIFKGLQERFQTEIQMVNKQFPCEPFKFLEPTLRLEYC 349
Query: 402 EGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDN 461
E + ML++AG+E+ DL+T +E+ LG+LV EKY T+FYIL +YPLAVRPFYTMP N
Sbjct: 350 EALAMLREAGIEMGDEEDLSTPNEKLLGRLVKEKYDTDFYILDKYPLAVRPFYTMPDPRN 409
Query: 462 SLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGF 521
SNS+D+F+RGEEI+SGAQRIH P+ L ERA GID++ I YIDSFR+GAPPH G
Sbjct: 410 PKQSNSYDMFMRGEEILSGAQRIHDPQLLTERALHHGIDLEKIKAYIDSFRFGAPPHAGG 469
Query: 522 GVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
G+GLERV MLF GL+N+R+TS++PRDP R+ P
Sbjct: 470 GIGLERVTMLFLGLHNVRQTSMFPRDPKRLTP 501
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q03577 | SYDC_CAEEL | 6, ., 1, ., 1, ., 1, 2 | 0.4676 | 0.9258 | 0.9642 | yes | no |
| O74407 | SYDC_SCHPO | 6, ., 1, ., 1, ., 1, 2 | 0.4576 | 0.8698 | 0.8293 | yes | no |
| Q922B2 | SYDC_MOUSE | 6, ., 1, ., 1, ., 1, 2 | 0.5309 | 0.8010 | 0.8842 | yes | no |
| Q5R9I5 | SYDC_PONAB | 6, ., 1, ., 1, ., 1, 2 | 0.5331 | 0.8010 | 0.8842 | yes | no |
| Q8SRQ8 | SYDC_ENCCU | 6, ., 1, ., 1, ., 1, 2 | 0.4013 | 0.8137 | 0.9513 | yes | no |
| P15178 | SYDC_RAT | 6, ., 1, ., 1, ., 1, 2 | 0.5243 | 0.8010 | 0.8842 | yes | no |
| Q3SYZ4 | SYDC_BOVIN | 6, ., 1, ., 1, ., 1, 2 | 0.5300 | 0.7956 | 0.8782 | yes | no |
| P14868 | SYDC_HUMAN | 6, ., 1, ., 1, ., 1, 2 | 0.5353 | 0.8010 | 0.8842 | yes | no |
| P04802 | SYDC_YEAST | 6, ., 1, ., 1, ., 1, 2 | 0.4843 | 0.9421 | 0.9353 | yes | no |
| Q75JQ1 | SYDC1_DICDI | 6, ., 1, ., 1, ., 1, 2 | 0.4514 | 0.8607 | 0.8263 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.12 | 0.914 |
| 3rd Layer | 6.1.1 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 553 | |||
| PLN02850 | 530 | PLN02850, PLN02850, aspartate-tRNA ligase | 0.0 | |
| PTZ00401 | 550 | PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Prov | 1e-168 | |
| cd00776 | 322 | cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/As | 1e-157 | |
| PRK05159 | 437 | PRK05159, aspC, aspartyl-tRNA synthetase; Provisio | 1e-144 | |
| TIGR00458 | 428 | TIGR00458, aspS_nondisc, nondiscriminating asparty | 1e-139 | |
| COG0017 | 435 | COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetas | 1e-137 | |
| pfam00152 | 345 | pfam00152, tRNA-synt_2, tRNA synthetases class II | 9e-83 | |
| PRK03932 | 450 | PRK03932, asnC, asparaginyl-tRNA synthetase; Valid | 8e-63 | |
| TIGR00457 | 453 | TIGR00457, asnS, asparaginyl-tRNA synthetase | 4e-61 | |
| cd00669 | 269 | cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA syn | 9e-57 | |
| PRK06462 | 335 | PRK06462, PRK06462, asparagine synthetase A; Revie | 9e-43 | |
| cd04320 | 102 | cd04320, AspRS_cyto_N, AspRS_cyto_N: N-terminal, a | 9e-42 | |
| cd00777 | 280 | cd00777, AspRS_core, Asp tRNA synthetase (aspRS) c | 3e-37 | |
| COG0173 | 585 | COG0173, AspS, Aspartyl-tRNA synthetase [Translati | 3e-33 | |
| TIGR00459 | 583 | TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba | 3e-28 | |
| TIGR00499 | 496 | TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukar | 4e-27 | |
| cd00775 | 329 | cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) c | 5e-27 | |
| PRK00476 | 588 | PRK00476, aspS, aspartyl-tRNA synthetase; Validate | 7e-27 | |
| PLN02603 | 565 | PLN02603, PLN02603, asparaginyl-tRNA synthetase | 1e-25 | |
| PLN02221 | 572 | PLN02221, PLN02221, asparaginyl-tRNA synthetase | 3e-25 | |
| COG1190 | 502 | COG1190, LysU, Lysyl-tRNA synthetase (class II) [T | 1e-22 | |
| PRK12445 | 505 | PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewe | 9e-22 | |
| PTZ00425 | 586 | PTZ00425, PTZ00425, asparagine-tRNA ligase; Provis | 9e-20 | |
| PLN02502 | 553 | PLN02502, PLN02502, lysyl-tRNA synthetase | 1e-18 | |
| PRK12820 | 706 | PRK12820, PRK12820, bifunctional aspartyl-tRNA syn | 2e-18 | |
| PLN02532 | 633 | PLN02532, PLN02532, asparagine-tRNA synthetase | 3e-17 | |
| PTZ00385 | 659 | PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisi | 2e-16 | |
| PLN02903 | 652 | PLN02903, PLN02903, aminoacyl-tRNA ligase | 3e-16 | |
| PRK00484 | 491 | PRK00484, lysS, lysyl-tRNA synthetase; Reviewed | 1e-15 | |
| PRK00476 | 588 | PRK00476, aspS, aspartyl-tRNA synthetase; Validate | 5e-15 | |
| COG0173 | 585 | COG0173, AspS, Aspartyl-tRNA synthetase [Translati | 8e-15 | |
| cd04100 | 85 | cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-ter | 2e-14 | |
| TIGR00459 | 583 | TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba | 5e-13 | |
| cd00768 | 211 | cd00768, class_II_aaRS-like_core, Class II tRNA am | 2e-09 | |
| PTZ00417 | 585 | PTZ00417, PTZ00417, lysine-tRNA ligase; Provisiona | 3e-09 | |
| PRK12820 | 706 | PRK12820, PRK12820, bifunctional aspartyl-tRNA syn | 1e-08 | |
| cd04317 | 135 | cd04317, EcAspRS_like_N, EcAspRS_like_N: N-termina | 3e-08 | |
| cd04316 | 108 | cd04316, ND_PkAspRS_like_N, ND_PkAspRS_like_N: N-t | 3e-07 | |
| PLN02903 | 652 | PLN02903, PLN02903, aminoacyl-tRNA ligase | 8e-07 | |
| COG2269 | 322 | COG2269, COG2269, Truncated, possibly inactive, ly | 1e-05 | |
| pfam01336 | 75 | pfam01336, tRNA_anti, OB-fold nucleic acid binding | 3e-05 | |
| TIGR00462 | 290 | TIGR00462, genX, EF-P lysine aminoacylase GenX | 5e-05 | |
| cd04319 | 103 | cd04319, PhAsnRS_like_N, PhAsnRS_like_N: N-termina | 2e-04 | |
| PRK09537 | 417 | PRK09537, pylS, pyrolysyl-tRNA synthetase; Reviewe | 4e-04 | |
| PRK02983 | 1094 | PRK02983, lysS, lysyl-tRNA synthetase; Provisional | 7e-04 | |
| COG0016 | 335 | COG0016, PheS, Phenylalanyl-tRNA synthetase alpha | 0.004 |
| >gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase | Back alignment and domain information |
|---|
Score = 977 bits (2528), Expect = 0.0
Identities = 398/544 (73%), Positives = 448/544 (82%), Gaps = 17/544 (3%)
Query: 11 QEEVDSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQ 70
QE V+ S + ISKKAAKK AAK K R EA A AA+A +E+ PLA+NYGDVPL+
Sbjct: 3 QEAVEESGEKISKKAAKKAAAKAEKLRR----EATAKAAAASLEDEDDPLASNYGDVPLE 58
Query: 71 ELQSVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRE 130
ELQS V GREWT V L L EVLIRGRVHT R G K AF+V+R+
Sbjct: 59 ELQS-----------KVTGREWTDVSDLGEELAGSEVLIRGRVHTIRGKG-KSAFLVLRQ 106
Query: 131 RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKL 190
TVQC+ V +VSK MV++ + LS ES+VDV GVVSVP +KG TQQVE+Q++K+
Sbjct: 107 SGFTVQCVVFVSEVTVSKGMVKYAKQLSRESVVDVEGVVSVPKKPVKGTTQQVEIQVRKI 166
Query: 191 YCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249
YCVS+A T P +EDA+RSE+EIEKA + G QL RV QDTRLNNRV+D+RT ANQ IFR
Sbjct: 167 YCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLRTPANQAIFR 226
Query: 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMS 309
IQSQV N+FR+FLLS+ FVEIHTPKLIAG+SEGGSAVFRLDYKGQ ACLAQSPQLHKQM+
Sbjct: 227 IQSQVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRLDYKGQPACLAQSPQLHKQMA 286
Query: 310 ICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGL 369
ICGDF RVFE GPVFRAEDS+THRHLCEFTGLD+EMEIK+HYSEV+D+VD LFV IFDGL
Sbjct: 287 ICGDFRRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGL 346
Query: 370 NNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLG 429
N CKKELEA+ +QYPFEPLKY PKTLRLTF EG+QMLK+AGVE+DPLGDLNTESERKLG
Sbjct: 347 NERCKKELEAIREQYPFEPLKYLPKTLRLTFAEGIQMLKEAGVEVDPLGDLNTESERKLG 406
Query: 430 QLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEF 489
QLV EKYGT+FYILHRYPLAVRPFYTMPC D+ YSNSFDVFIRGEEIISGAQR+H PE
Sbjct: 407 QLVKEKYGTDFYILHRYPLAVRPFYTMPCPDDPKYSNSFDVFIRGEEIISGAQRVHDPEL 466
Query: 490 LAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPL 549
L +RA+ CGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSL+PRDP
Sbjct: 467 LEKRAEECGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQ 526
Query: 550 RIAP 553
R+AP
Sbjct: 527 RLAP 530
|
Length = 530 |
| >gnl|CDD|173592 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 489 bits (1259), Expect = e-168
Identities = 256/577 (44%), Positives = 352/577 (61%), Gaps = 71/577 (12%)
Query: 15 DSSSQSISKKAAKKEAAKKAK--EERRKEAEAAASAASALSIEEEGPLANNYGDVPLQEL 72
D+ + ++ KK + KEA K A+ EE+ + AE AA + +G P+ +
Sbjct: 7 DAGAPAVEKKQSDKEARKAARLAEEKARAAEKAALVEK---------YKDVFGAAPMVQ- 56
Query: 73 QSVNDPQTGKWSEAVNGREWTVVGALNG-SLKDQEVLIRGRVHTTRPVGNKLAFVVVRER 131
S R + V L+ L D+ VLIR RV TTR G K+AF+V+R+
Sbjct: 57 -----------STTYKSRTFIPVAVLSKPELVDKTVLIRARVSTTRKKG-KMAFMVLRDG 104
Query: 132 VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQ-VEVQIKKL 190
+VQ +A V+ D V KEM+ F+ + ESIVDV V + I + +E+++KK+
Sbjct: 105 SDSVQAMAAVEGD-VPKEMIDFIGQIPTESIVDVEATVCKVEQPITSTSHSDIELKVKKI 163
Query: 191 YCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249
+ V+ + +T P T+EDASR E++ EG +VN DTRLN+R +D+RT A+ IFR
Sbjct: 164 HTVTESLRTLPFTLEDASRKESD------EGA---KVNFDTRLNSRWMDLRTPASGAIFR 214
Query: 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMS 309
+QS+V FRQFL+ +F EIH+PK+I SEGG+ VF+L+Y + A LAQSPQL+KQM
Sbjct: 215 LQSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVFKLEYFNRFAYLAQSPQLYKQMV 274
Query: 310 ICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGL 369
+ GD RVFE GPVFR+E+S THRHL EF GLDVEM I +HY EV+D+ + LF IF+ L
Sbjct: 275 LQGDVPRVFEVGPVFRSENSNTHRHLTEFVGLDVEMRINEHYYEVLDLAESLFNYIFERL 334
Query: 370 NNVCKKELEAVAKQYPFEPL-------------------------KYKPKT-------LR 397
KEL+AV +QYPFEPL KY+ + LR
Sbjct: 335 AT-HTKELKAVCQQYPFEPLVWKLTPERMKELGVGVISEGVEPTDKYQARVHNMDSRMLR 393
Query: 398 LTFEEGVQMLKDAGVE-IDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTM 456
+ + +++L E + P D+NT +E+ LG+LV E+YGT+F+I R+P + RPFYTM
Sbjct: 394 INYMHCIELLNTVLEEKMAPTDDINTTNEKLLGKLVKERYGTDFFISDRFPSSARPFYTM 453
Query: 457 PCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAP 516
C D+ ++NS+D+FIRGEEI SGAQRIH P+ L RA+ +D+ I Y+DSFR GA
Sbjct: 454 ECKDDERFTNSYDMFIRGEEISSGAQRIHDPDLLLARAKMLNVDLTPIKEYVDSFRLGAW 513
Query: 517 PHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
PHGGFGVGLERVVML+ GL+N+R SL+PRDP R P
Sbjct: 514 PHGGFGVGLERVVMLYLGLSNVRLASLFPRDPQRTTP 550
|
Length = 550 |
| >gnl|CDD|238399 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Score = 451 bits (1163), Expect = e-157
Identities = 147/327 (44%), Positives = 203/327 (62%), Gaps = 9/327 (2%)
Query: 225 RVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS 284
N +T L+NR +D+RT Q IFRI+S+V FR+FL F E+HTPK+ + +EGG+
Sbjct: 1 DANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGA 60
Query: 285 AVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVE 344
+F++ Y G+ A LAQSPQL+K+M I RV+E GPVFRAE S T RHL EF L+ E
Sbjct: 61 ELFKVSYFGKPAYLAQSPQLYKEMLIAA-LERVYEIGPVFRAEKSNTRRHLSEFWMLEAE 119
Query: 345 MEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGV 404
M + Y+EVMD+++ L IF + C KELE V Q E LK R+T++E +
Sbjct: 120 MAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELV-NQLNRELLKPLEPFPRITYDEAI 178
Query: 405 QMLKDAGV--EIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNS 462
++L++ GV E+ DL+TE ER LG E + + YP ++PFY P DN
Sbjct: 179 ELLREKGVEEEVKWGEDLSTEHERLLG----EIVKGDPVFVTDYPKEIKPFYMKPDDDNP 234
Query: 463 LYSNSFDVFIRG-EEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGF 521
SFD+ + G EI+ G+QRIH + L ER + G+D ++ Y+D +YG PPHGGF
Sbjct: 235 ETVESFDLLMPGVGEIVGGSQRIHDYDELEERIKEHGLDPESFEWYLDLRKYGMPPHGGF 294
Query: 522 GVGLERVVMLFCGLNNIRKTSLYPRDP 548
G+GLER+VM GL+NIR+ L+PRDP
Sbjct: 295 GLGLERLVMWLLGLDNIREAILFPRDP 321
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Length = 322 |
| >gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 423 bits (1091), Expect = e-144
Identities = 179/449 (39%), Positives = 267/449 (59%), Gaps = 28/449 (6%)
Query: 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 164
+EV + G VH R +G +AF+++R+R +Q VK +E+ ++ L ES+V
Sbjct: 17 EEVTLAGWVHEIRDLG-GIAFLILRDRSGIIQV--VVKKKVD-EELFETIKKLKRESVVS 72
Query: 165 VIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLP 224
V G V A VEV +++ +++A + P+ ++ + + AE+
Sbjct: 73 VTGTV----KANPKAPGGVEVIPEEIEVLNKA-EEPLPLDISGKVLAEL----------- 116
Query: 225 RVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS 284
DTRL+NR +D+R + IF+I+S+V FR+FL F EI TPK++A +EGG+
Sbjct: 117 ----DTRLDNRFLDLRRPRVRAIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGTEGGA 172
Query: 285 AVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVE 344
+F +DY + A LAQSPQL+KQM + F RVFE GPVFRAE+ T RHL E+T +DVE
Sbjct: 173 ELFPIDYFEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHNTSRHLNEYTSIDVE 232
Query: 345 MEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGV 404
M + +VMD+++ L +++ + C+KELE + + P R+T++E +
Sbjct: 233 MGFIDDHEDVMDLLENLLRYMYEDVAENCEKELELLGIELPVPETPIP----RITYDEAI 288
Query: 405 QMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLY 464
++LK G EI DL+TE ER LG+ V E+YG++FY + YP RPFYTMP D+
Sbjct: 289 EILKSKGNEISWGDDLDTEGERLLGEYVKEEYGSDFYFITDYPSEKRPFYTMPDEDDPEI 348
Query: 465 SNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVG 524
S SFD+ RG EI SG QRIH + L E + G++ ++ Y+++F+YG PPHGGFG+G
Sbjct: 349 SKSFDLLFRGLEITSGGQRIHRYDMLVESIKEKGLNPESFEFYLEAFKYGMPPHGGFGLG 408
Query: 525 LERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
LER+ M GL NIR+ L+PRD R+ P
Sbjct: 409 LERLTMKLLGLENIREAVLFPRDRHRLTP 437
|
Length = 437 |
| >gnl|CDD|129550 TIGR00458, aspS_nondisc, nondiscriminating aspartyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 409 bits (1054), Expect = e-139
Identities = 178/450 (39%), Positives = 259/450 (57%), Gaps = 35/450 (7%)
Query: 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 164
QEV G VH R +G L FV++R+R +Q T VSK + ++ + L+ ES+V
Sbjct: 13 QEVTFMGWVHEIRDLG-GLIFVLLRDREGLIQ--ITAPAKKVSKNLFKWAKKLNLESVVA 69
Query: 165 VIGVVSVPDVEIKGAT-QQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQL 223
V G+V +IK E+ K+ ++ AK P+ ++ + AE+
Sbjct: 70 VRGIV-----KIKEKAPGGFEIIPTKIEVIN-EAKEPLPLDPTEKVPAEL---------- 113
Query: 224 PRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGG 283
DTRL+ R +D+R Q IFRI+S V R+FL E F+E+HTPKL+A ++EGG
Sbjct: 114 -----DTRLDYRFLDLRRPTVQAIFRIRSGVLESVREFLAEEGFIEVHTPKLVASATEGG 168
Query: 284 SAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDV 343
+ +F + Y + A L QSPQL+KQ + F RV+E GP+FRAE+ THRHL E T +D+
Sbjct: 169 TELFPITYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDI 228
Query: 344 EMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEG 403
EM + H +VMDI++ L V +F+ + C +LE + + K+ RLT++E
Sbjct: 229 EMAFEDH-HDVMDILEELVVRVFEDVPERCAHQLETLEFKLEKPEGKFV----RLTYDEA 283
Query: 404 VQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSL 463
++M GVEI DL+TE+E+ LG E+ ++I +P +RPFYTMP DN
Sbjct: 284 IEMANAKGVEIGWGEDLSTEAEKALG----EEMDGLYFITD-WPTEIRPFYTMPDEDNPE 338
Query: 464 YSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGV 523
S SFD+ R EI SGAQRIH+ + L ER +A G++ + Y+++F YG PPH G+G+
Sbjct: 339 ISKSFDLMYRDLEISSGAQRIHLHDLLVERIKAKGLNPEGFKDYLEAFSYGMPPHAGWGL 398
Query: 524 GLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
G ER VM GL NIR+ L+PRD R+ P
Sbjct: 399 GAERFVMFLLGLKNIREAVLFPRDRKRLTP 428
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn) [Protein synthesis, tRNA aminoacylation]. Length = 428 |
| >gnl|CDD|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 404 bits (1040), Expect = e-137
Identities = 162/452 (35%), Positives = 237/452 (52%), Gaps = 36/452 (7%)
Query: 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 164
QEV +RG VH R +G K+ F+V+R+ +Q V + V +E+ + + L+ ES V
Sbjct: 17 QEVTVRGWVHNKRDLG-KIIFLVLRDGSGFIQA--VVPKNKVYEELFKA-KKLTLESSVV 72
Query: 165 VIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQL 223
V G+V A Q E+Q++K+ + A PI ++
Sbjct: 73 VTGIV----KASPKAPQGFELQVEKIEVLGEADPPYPIDKKE------------------ 110
Query: 224 PRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGG 283
+T L+NR +D+RT Q +F+I+S + R+F F E+HTP + A ++EGG
Sbjct: 111 -HSELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYENGFTEVHTPIITASATEGG 169
Query: 284 SAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDV 343
+F++DY + A L QSPQL+K+ RVF GP FRAE S T RHL EF LD
Sbjct: 170 GELFKVDYFDKEAYLTQSPQLYKEALAAA-LERVFTIGPTFRAEKSNTRRHLSEFWMLDP 228
Query: 344 EMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEG 403
EM ++VMD+ + L +F + C ELE + + R+T++E
Sbjct: 229 EMAFADL-NDVMDLAEELIKYLFKKVLEECADELEFLGRDNSELKRPESAPFPRITYKEA 287
Query: 404 VQMLKDAGVEIDPLG-DLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNS 462
+++L++ G E G DL TE ER LG E+Y + YP ++PFY P DN
Sbjct: 288 IEILEEKGFEKVEWGDDLGTEHERYLG----EEYFKPPVFVTNYPKEIKPFYMRPDPDNP 343
Query: 463 LYSNSFDVFIRGE-EIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGF 521
SFD+ G EII G+QR H + L ER + G+D ++ Y+D +YG PPH GF
Sbjct: 344 GTVASFDLLAPGGGEIIGGSQREHDYDLLVERIKEKGLDPESYEWYLDLRKYGMPPHAGF 403
Query: 522 GVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
G+GLER+VM GL+NIR+ +PRDP R+ P
Sbjct: 404 GLGLERLVMYILGLDNIREAIPFPRDPGRLYP 435
|
Length = 435 |
| >gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N) | Back alignment and domain information |
|---|
Score = 261 bits (669), Expect = 9e-83
Identities = 108/349 (30%), Positives = 168/349 (48%), Gaps = 32/349 (9%)
Query: 227 NQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAV 286
+++TRL R +D+R Q +++S++ R+FL F+E+ TP L + EGG+
Sbjct: 1 SEETRLKYRYLDLRRPKMQANLKLRSKIIKAIREFLDERGFLEVETPILTKSTPEGGARD 60
Query: 287 FRLDYK--GQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVE 344
F + K + A L QSPQL+KQ+ + F RVF+ P FR ED T RH EFT LD+E
Sbjct: 61 FLVPSKFYAKEAYLPQSPQLYKQLLMVAGFDRVFQIAPCFRDEDLRTDRHPPEFTQLDLE 120
Query: 345 MEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKY----------KPK 394
M Y +VMD+ + L +F + ++ + F + Y KP
Sbjct: 121 MSFVD-YEDVMDLTEDLIKYVFKKVLGKREELELLGIELPEFPRITYAEAIERYGSDKPD 179
Query: 395 T-LRLTFEEGVQMLKDAGVEI---------DPLG-DLNTESERKLGQLVLEKYGTEFYIL 443
L ++ ++ K + ++ LG + E LG +K +
Sbjct: 180 LRFGLELKDVTEIFKGSEFKVFAEAGDVVDKALGALRSELGEENLG----DKDKDNPVFV 235
Query: 444 HRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKT 503
+PL PFY D + FD+ + G EI G+ RIH PE +R + G+D +
Sbjct: 236 TDFPLFEHPFYMPKDEDPPGLAERFDLVLNGGEIGGGSIRIHDPEEQRKRFEELGLDPEE 295
Query: 504 IST----YIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDP 548
Y+D+ +YG PPHGG G+GL+R+VML GL +IR+ +P+
Sbjct: 296 AEEKFGFYLDALKYGMPPHGGIGLGLDRLVMLLTGLESIREVIAFPKTR 344
|
Length = 345 |
| >gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 212 bits (543), Expect = 8e-63
Identities = 132/487 (27%), Positives = 207/487 (42%), Gaps = 67/487 (13%)
Query: 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVR 152
++ L G QEV +RG V T R G K+AF+ +R+ Q E
Sbjct: 5 SIKDILKGKYVGQEVTVRGWVRTKRDSG-KIAFLQLRDGSCFKQLQVVKDNGE---EYFE 60
Query: 153 FVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEA 211
++ L+ S V V G V VE A Q E+Q K+ + + PI + S
Sbjct: 61 EIKKLTTGSSVIVTGTV----VESPRAGQGYELQATKIEVIGEDPEDYPIQKKRHSI--- 113
Query: 212 EIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIH 271
+ + RT + RI++ + +F FV +
Sbjct: 114 -----------------EFLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENGFVWVD 156
Query: 272 TPKLIAGSSEGGSAVFRL---------DYKGQSACLAQSPQLHKQMSICGDFGRVFETGP 322
TP + A EG +FR+ D+ G+ A L S QL+ + G+V+ GP
Sbjct: 157 TPIITASDCEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAYAMA-LGKVYTFGP 215
Query: 323 VFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDG-LNNVCKKELEAVA 381
FRAE+S T RHL EF ++ EM + MD+ + + + L N C +LE +
Sbjct: 216 TFRAENSNTRRHLAEFWMIEPEMAFADL-EDNMDLAEEMLKYVVKYVLEN-CPDDLEFLN 273
Query: 382 KQYP---FEPLK--YKPKTLRLTFEEGVQMLKDAGVEIDPL---G-DLNTESERKLGQLV 432
++ E L+ + R+T+ E +++L+ +G + + G DL +E ER
Sbjct: 274 RRVDKGDIERLENFIESPFPRITYTEAIEILQKSGKKFEFPVEWGDDLGSEHER------ 327
Query: 433 LEKYGTEFY-----ILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRG-EEIISGAQRIHI 486
Y E + + YP ++ FY D + + D+ G EII G+QR
Sbjct: 328 ---YLAEEHFKKPVFVTNYPKDIKAFYMRLNPDGKTVA-AMDLLAPGIGEIIGGSQREER 383
Query: 487 PEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPR 546
+ L R + G++ + Y+D RYG+ PH GFG+G ER+V GL+NIR +PR
Sbjct: 384 LDVLEARIKELGLNKEDYWWYLDLRRYGSVPHSGFGLGFERLVAYITGLDNIRDVIPFPR 443
Query: 547 DPLRIAP 553
P R
Sbjct: 444 TPGRAEF 450
|
Length = 450 |
| >gnl|CDD|232982 TIGR00457, asnS, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 208 bits (531), Expect = 4e-61
Identities = 120/470 (25%), Positives = 206/470 (43%), Gaps = 50/470 (10%)
Query: 103 KDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESI 162
EV + G V T R K+ F+ + + S++ + V + + + ++SL+ S
Sbjct: 15 VGDEVTVSGWVRTKRSSK-KIIFLELNDG-SSLGPIQAVINGEDNPYLFQLLKSLTTGSS 72
Query: 163 VDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQ 222
V V G V VE G Q VE+Q+KK+ V A + Q
Sbjct: 73 VSVTGKV----VESPGKGQPVELQVKKIEVVGEAEPDDYPL------------------Q 110
Query: 223 LPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG 282
+ + + + +RT + R+++ + ++ F + P L + EG
Sbjct: 111 KKEHSLEFLRDIAHLRLRTNTLGAVMRVRNALSQAIHRYFQENGFTWVSPPILTSNDCEG 170
Query: 283 GSAVFRL---------DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHR 333
+FR+ D+ G+ A L S QL+ + +V+ GP FRAE S T R
Sbjct: 171 AGELFRVSTGNIDFSQDFFGKEAYLTVSGQLYLETYALA-LSKVYTFGPTFRAEKSNTSR 229
Query: 334 HLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKP 393
HL EF ++ EM ++++ + + L I + C +EL+ + K + + +K
Sbjct: 230 HLSEFWMIEPEMAFAN-LNDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLE 288
Query: 394 KTL-----RLTFEEGVQMLKDAG--VEIDPL--GDLNTESERKLGQLVLEKYGTEFYILH 444
+ R+T+ + +++LK++ E + DL TE ER L E+Y +
Sbjct: 289 NIINNKFARITYTDAIEILKESDKNFEYEDFWGDDLQTEHERFLA----EEYFKPPVFVT 344
Query: 445 RYPLAVRPFYTMPCHDNSLYSNSFDVFIRG-EEIISGAQRIHIPEFLAERAQACGIDVKT 503
YP ++ FY D + + D+ G EII G++R + L R + G+D
Sbjct: 345 NYPKDIKAFYMKLNDDGKTVA-AMDLLAPGIGEIIGGSEREDDLDKLENRMKEMGLDTDA 403
Query: 504 ISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
++ Y+D +YG+ PH GFG+G ER++ GL NIR +PR P I
Sbjct: 404 LNWYLDLRKYGSVPHSGFGLGFERLLAYITGLENIRDAIPFPRTPGNINF 453
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn [Protein synthesis, tRNA aminoacylation]. Length = 453 |
| >gnl|CDD|238358 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Score = 190 bits (485), Expect = 9e-57
Identities = 86/306 (28%), Positives = 135/306 (44%), Gaps = 45/306 (14%)
Query: 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY--KGQSACLAQSPQLH 305
F+++S++ R F+ F+E+ TP L + G+ F + Y G L SPQL
Sbjct: 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKYNALGLDYYLRISPQLF 60
Query: 306 KQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365
K+ + G RVFE FR ED RH EFT +D+EM Y +V+++ +RL +
Sbjct: 61 KKRLMVGGLDRVFEINRNFRNEDL-RARHQPEFTMMDLEMAFAD-YEDVIELTERLVRHL 118
Query: 366 FDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESE 425
+ V + P RLT+ E
Sbjct: 119 AREVLGVTAVTYG----FELEDFGLPFP---RLTYREA---------------------- 149
Query: 426 RKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIH 485
LE+YG + L YP + P N +++FD+FI G E+ +G+ R+H
Sbjct: 150 -------LERYG-QPLFLTDYPAEMHSPLASPHDVNPEIADAFDLFINGVEVGNGSSRLH 201
Query: 486 IPEFLAERAQACGID----VKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKT 541
P+ AE Q GI+ ++ Y+ + YG PPHGG G+G++R++ML IR+
Sbjct: 202 DPDIQAEVFQEQGINKEAGMEYFEFYLKALEYGLPPHGGLGIGIDRLIMLMTNSPTIREV 261
Query: 542 SLYPRD 547
+P+
Sbjct: 262 IAFPKM 267
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. Length = 269 |
| >gnl|CDD|235808 PRK06462, PRK06462, asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 9e-43
Identities = 95/314 (30%), Positives = 150/314 (47%), Gaps = 24/314 (7%)
Query: 247 IFRIQSQVGNIFRQFLLSENFVEIHTP-------KLIAGSSEGGSAVFRLDYKGQSACLA 299
+ ++QS + R+FL FVE+ P L+ S+ +D+ G LA
Sbjct: 29 VLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDFYGVEYYLA 88
Query: 300 QSPQLHKQMSICGDFGRVFETGPVFRAE--DSYTHRHLCEFTGLDVEMEIKKHYSEVMDI 357
S LHKQ+++ G++F P FR E D T RHL EFT LD+E+E EVMD+
Sbjct: 89 DSMILHKQLAL-RMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIE-GADLDEVMDL 146
Query: 358 VDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPL 417
++ L + L + ELE + P K R+T +E V++L + G L
Sbjct: 147 IEDLIKYLVKELLEEHEDELEFFGRDLP----HLKRPFKRITHKEAVEILNEEGCRGIDL 202
Query: 418 GDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIR---G 474
+L +E E+ L E + F+I+ P R FY + ++D+ + G
Sbjct: 203 EELGSEGEKSL----SEHFEEPFWIID-IPKGSREFYDREDPERPGVLRNYDLLLPEGYG 257
Query: 475 EEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCG 534
E +SG +R + E + ER + G+D + Y++ + G P GFG+G+ER+ CG
Sbjct: 258 E-AVSGGEREYEYEEIVERIREHGVDPEKYKWYLEMAKEGPLPSAGFGIGVERLTRYICG 316
Query: 535 LNNIRKTSLYPRDP 548
L +IR+ +PR P
Sbjct: 317 LRHIREVQPFPRVP 330
|
Length = 335 |
| >gnl|CDD|239815 cd04320, AspRS_cyto_N, AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 9e-42
Identities = 53/102 (51%), Positives = 70/102 (68%), Gaps = 2/102 (1%)
Query: 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDV 165
EVLIR RVHT+R G KLAF+V+R++ T+Q + + VSK+MV++ SLS ESIVDV
Sbjct: 1 EVLIRARVHTSRAQGAKLAFLVLRQQGYTIQGVLAASAEGVSKQMVKWAGSLSKESIVDV 60
Query: 166 IGVVSVPDVEIKGATQQ-VEVQIKKLYCVSRAAKT-PITIED 205
G V P+ IK TQQ VE+ I+K+Y VS AA+ P +ED
Sbjct: 61 EGTVKKPEEPIKSCTQQDVELHIEKIYVVSEAAEPLPFQLED 102
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Length = 102 |
| >gnl|CDD|238400 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 3e-37
Identities = 94/323 (29%), Positives = 146/323 (45%), Gaps = 72/323 (22%)
Query: 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVF----RLDYKGQSACLAQSPQ 303
R++S+V R FL + FVEI TP L S+ G+ F RL + G+ L QSPQ
Sbjct: 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTK-STPEGARDFLVPSRL-HPGKFYALPQSPQ 58
Query: 304 LHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEME-IKKHYSEVMDIVDRLF 362
L KQ+ + F R F+ FR ED R EFT +D+EM + + ++M +++ L
Sbjct: 59 LFKQLLMVSGFDRYFQIARCFRDEDLRADRQ-PEFTQIDIEMSFVDQE--DIMSLIEGLL 115
Query: 363 VTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVE----ID-PL 417
+F KE+ V PF R+T+ E M + G + +D PL
Sbjct: 116 KYVF--------KEVLGVELTTPFP---------RMTYAEA--MER-YGFKFLWIVDFPL 155
Query: 418 GDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLY----------SNS 467
+ + E R H PF T P + L + +
Sbjct: 156 FEWDEEEGR-------------LVSAH------HPF-TAP-KEEDLDLLEKDPEDARAQA 194
Query: 468 FDVFIRGEEIISGAQRIHIPEFLAERA-QACGIDVKTIST----YIDSFRYGAPPHGGFG 522
+D+ + G E+ G+ RIH P+ + E+ + G+ + +++F+YGAPPHGG
Sbjct: 195 YDLVLNGVELGGGSIRIHDPD-IQEKVFEILGLSEEEAEEKFGFLLEAFKYGAPPHGGIA 253
Query: 523 VGLERVVMLFCGLNNIRKTSLYP 545
+GL+R+VML G +IR +P
Sbjct: 254 LGLDRLVMLLTGSESIRDVIAFP 276
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. Length = 280 |
| >gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 3e-33
Identities = 86/308 (27%), Positives = 133/308 (43%), Gaps = 48/308 (15%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
G L S Q V + G VH R G L F+ +R+R VQ + S E
Sbjct: 7 GELRESHVGQTVTLSGWVHRRRDHG-GLIFIDLRDREGIVQVVFD---PEDSPEAFEVAS 62
Query: 156 SLSNESIVDVIGVVSV-PDVEI--KGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAE 212
L NE ++ V G V P+ I T ++EV +++ ++ + P IED
Sbjct: 63 RLRNEFVIQVTGTVRARPEGTINPNLPTGEIEVLAEEIEVLNASKTLPFQIEDE------ 116
Query: 213 IEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHT 272
+++ RL R +D+R Q +++S+V R FL + F+EI T
Sbjct: 117 -----------TNASEEIRLKYRYLDLRRPEMQKNLKLRSKVTKAIRNFLDDQGFLEIET 165
Query: 273 PKLIAGSSEGGSAVFRLDY-------KGQSACLAQSPQLHKQMSICGDFGRVFETGPVFR 325
P L + EG R D+ G+ L QSPQL KQ+ + F R ++ FR
Sbjct: 166 PILTKSTPEGA----R-DFLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFR 220
Query: 326 AEDSYTHRHLCEFTGLDVEME-IKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQY 384
ED R EFT +D+EM + + +VM+++++L +F V EL+
Sbjct: 221 DEDLRADRQP-EFTQIDLEMSFVDEE--DVMELIEKLLRYVF---KEVKGIELKT----- 269
Query: 385 PFEPLKYK 392
PF + Y
Sbjct: 270 PFPRMTYA 277
|
Length = 585 |
| >gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 3e-28
Identities = 79/308 (25%), Positives = 132/308 (42%), Gaps = 49/308 (15%)
Query: 95 VGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV 154
G L Q V + G V+ R +G L F+ +R+R VQ PD+ + ++ + +
Sbjct: 6 CGQLRTEHLGQTVTLAGWVNRRRDLG-GLIFIDLRDRSGIVQ--VVCDPDADALKLAKGL 62
Query: 155 RSLSNESIVDVIGVVSVPDVEIKG---ATQQVEVQIKKLYCVSRAAKTPITIEDASRSEA 211
R NE +V V G VS T ++E+ + + ++++ P+ IE
Sbjct: 63 R---NEDVVQVKGKVSARPEGNINRNLDTGEIEILAESITLLNKSKTPPLIIEKTD---- 115
Query: 212 EIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIH 271
++ RL R +D+R Q +++ +V R FL + F+EI
Sbjct: 116 --------------AEEEVRLKYRYLDLRRPEMQQRLKLRHKVTKAVRNFLDQQGFLEIE 161
Query: 272 TPKLIAGSSEGGSAVFRLDY-------KGQSACLAQSPQLHKQMSICGDFGRVFETGPVF 324
TP L + EG DY KG+ L QSPQL KQ+ + R ++ F
Sbjct: 162 TPMLTKSTPEGAR-----DYLVPSRVHKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCF 216
Query: 325 RAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQY 384
R ED R EFT +D+EM +VM+++++L +F E++ + +
Sbjct: 217 RDEDLRADRQ-PEFTQIDMEMSFMTQ-EDVMELIEKLVSHVF--------LEVKGIDLKK 266
Query: 385 PFEPLKYK 392
PF + Y
Sbjct: 267 PFPVMTYA 274
|
Asparate--tRNA ligases in this family may be discriminating (6.1.1.12) or nondiscriminating (6.1.1.23). In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences [Protein synthesis, tRNA aminoacylation]. Length = 583 |
| >gnl|CDD|232998 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 4e-27
Identities = 120/484 (24%), Positives = 200/484 (41%), Gaps = 84/484 (17%)
Query: 102 LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNES 161
K+ EV I GR+ R K F+ +++ +Q V D + ++ F L +
Sbjct: 51 DKNIEVSIAGRIMARR-SMGKATFITLQDESGQIQLY--VNKDDLPEDFYEFDEYLLD-- 105
Query: 162 IVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGV 221
+ D+IGV P K T ++ V + +L +++A + D G+
Sbjct: 106 LGDIIGVTGYP---FKTKTGELSVHVTELQILTKALRPL---PDKFH-----------GL 148
Query: 222 QLPRVNQDTRLNNRVID-IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS 280
+Q+TR R +D I ++ F ++S++ R+FL F+E+ TP L
Sbjct: 149 T----DQETRYRQRYLDLIVNPDSRQTFLVRSKIIKAIRRFLDDRGFIEVETPML---QV 201
Query: 281 EGGSAVFR--------LD---YKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDS 329
G A R LD Y L +P+L+ + I G F +V+E G FR E
Sbjct: 202 IPGGANARPFITHHNALDMDLY------LRIAPELYLKRLIVGGFEKVYEIGRNFRNE-G 254
Query: 330 YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCK---KELEAVAKQYPF 386
H EFT ++ Y ++MD+ + LF + L K ELE K+ PF
Sbjct: 255 VDTTHNPEFTMIEFYQAYAD-YEDLMDLTENLFKFLAQELLGTTKITYGELEIDFKK-PF 312
Query: 387 EPLKYKPKTLRL------------TFEEGVQMLKDAGVEI--DPLGD---LNTESERKLG 429
+ + + FE + K G+E+ L LN E+ L
Sbjct: 313 KRITMVEAIKKYDMETGIDFDDLKDFETAKALAKKIGIEVAEKSLTLGHILNELFEQFLE 372
Query: 430 QLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEF 489
+++ +I H YP + P N +++ F++FI G+EI + ++ P
Sbjct: 373 HTLIQPT----FITH-YPAEISPL-AKRNPSNPEFTDRFELFIAGKEIANAFSELNDPLD 426
Query: 490 LAER------AQACGIDVKTI--STYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKT 541
ER + G D ++++ YG PP GG G+G++R+VML +IR
Sbjct: 427 QRERFEQQVAEKEAGDDEAQFVDEDFVEALEYGMPPTGGLGIGIDRLVMLLTDSKSIRDV 486
Query: 542 SLYP 545
L+P
Sbjct: 487 ILFP 490
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms [Protein synthesis, tRNA aminoacylation]. Length = 496 |
| >gnl|CDD|238398 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 5e-27
Identities = 85/344 (24%), Positives = 146/344 (42%), Gaps = 72/344 (20%)
Query: 248 FRIQSQVGNIFRQFLLSENFVEIHTPKL--IAGSSEGGSA--------VFRLDYKGQSAC 297
F ++S++ + R+FL F+E+ TP L IAG G +A +D
Sbjct: 8 FIVRSKIISYIRKFLDDRGFLEVETPMLQPIAG---GAAARPFITHHNALDMDLY----- 59
Query: 298 LAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDI 357
L +P+L+ + I G F RV+E G FR E H EFT ++ Y+++MD+
Sbjct: 60 LRIAPELYLKRLIVGGFERVYEIGRNFRNE-GIDLTHNPEFTMIEFYEAYAD-YNDMMDL 117
Query: 358 VDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPL 417
+ LF + + + K +Y + L + P R+T + ++ + G++ L
Sbjct: 118 TEDLFSGL---VKKINGKT----KIEYGGKELDFTPPFKRVTMVDALK--EKTGIDFPEL 168
Query: 418 GDLNTESERK---------------LGQLVLEKYGTEF---------YILHRYPLAVRPF 453
E K LG+L+ + + EF +I+ +P+ + P
Sbjct: 169 DLEQPEELAKLLAKLIKEKIEKPRTLGKLLDKLFE-EFVEPTLIQPTFIID-HPVEISPL 226
Query: 454 YTMPCHDNSLYSNSFDVFIRGEEIISG--------AQRIHIPEFLAERAQ----ACGIDV 501
N + F++FI G+EI + QR E ++ A +D
Sbjct: 227 -AKRHRSNPGLTERFELFICGKEIANAYTELNDPFDQRERFEEQAKQKEAGDDEAMMMD- 284
Query: 502 KTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYP 545
++ + YG PP GG G+G++R+VML N+IR L+P
Sbjct: 285 ---EDFVTALEYGMPPTGGLGIGIDRLVMLLTDSNSIRDVILFP 325
|
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Length = 329 |
| >gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 7e-27
Identities = 92/322 (28%), Positives = 140/322 (43%), Gaps = 67/322 (20%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
G L S Q V + G VH R G L F+ +R+R VQ PD+ + E+
Sbjct: 9 GELRESHVGQTVTLCGWVHRRRDHGG-LIFIDLRDREGIVQV--VFDPDAEAFEVAE--- 62
Query: 156 SLSNESIVDVIGVVSV-PDVEI--KGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAE 212
SL +E ++ V G V P+ + T ++EV +L ++++ P I+D E
Sbjct: 63 SLRSEYVIQVTGTVRARPEGTVNPNLPTGEIEVLASELEVLNKSKTLPFPIDD------E 116
Query: 213 IEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHT 272
+ V+++ RL R +D+R Q +++S+V + R FL F+EI T
Sbjct: 117 ED-----------VSEELRLKYRYLDLRRPEMQKNLKLRSKVTSAIRNFLDDNGFLEIET 165
Query: 273 PKLIAGSSEGGSAVFRLDY-------KGQSACLAQSPQLHKQMSICGDFGRVFETGPVFR 325
P L + EG A R DY G+ L QSPQL KQ+ + F R ++ FR
Sbjct: 166 PILTKSTPEG--A--R-DYLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFR 220
Query: 326 AEDSYTHRHLCEFTGLDVEMEIKKHYS-----EVMDIVDRLFVTIFDGLNNVCKKELEAV 380
ED R EFT +D+EM S +VM +++ L +F V +L
Sbjct: 221 DEDLRADRQP-EFTQIDIEM------SFVTQEDVMALMEGLIRHVF---KEVLGVDLPT- 269
Query: 381 AKQYPFEPLKYKPKTLRLTFEE 402
PF R+T+ E
Sbjct: 270 ----PFP---------RMTYAE 278
|
Length = 588 |
| >gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-25
Identities = 126/504 (25%), Positives = 213/504 (42%), Gaps = 111/504 (22%)
Query: 105 QEVLIRGRVHTTRPVGNKLAFVVVRER--VSTVQCLATVKPDSVSKEMVRFVRSLSNESI 162
+ + + G V T R + + F+ V + +S +QC+ T PD+ + V + S+
Sbjct: 108 KTLNVMGWVRTLR-AQSSVTFIEVNDGSCLSNMQCVMT--PDAEGYDQVESGLITTGASV 164
Query: 163 VDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGV 221
+ V G V V +G Q+VE+++ K+ V ++ + PI + SR E +
Sbjct: 165 L-VQGTV----VSSQGGKQKVELKVSKIVVVGKSDPSYPIQKKRVSR-----EFLRTKAH 214
Query: 222 QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTP-------- 273
PR N T + R+++ + +F FV + +P
Sbjct: 215 LRPRTN-------------TFG--AVARVRNALAYATHKFFQENGFVWVSSPIITASDCE 259
Query: 274 ---------KLIAGSSE-GGSAVFRL------------DYKGQSACLAQSPQLHKQMSIC 311
LI S+E GGS V + D+ G+ A L S QL+ + +
Sbjct: 260 GAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGE-TYA 318
Query: 312 GDFGRVFETGPVFRAEDSYTHRHLCEF---------TGLDVEMEIKKHY----------- 351
V+ GP FRAE+S T RHL EF L+ +M Y
Sbjct: 319 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILEN 378
Query: 352 -SEVMDIVDRLFVT-IFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKD 409
E M+ + I D L++V +K ++L++ + +++L
Sbjct: 379 CKEDMEFFNTWIEKGIIDRLSDVVEKNF------------------VQLSYTDAIELLLK 420
Query: 410 AGVEID-PLG---DLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYS 465
A + + P+ DL +E ER + + E +G I+ YP ++ FY M +D+
Sbjct: 421 AKKKFEFPVKWGLDLQSEHERYITE---EAFGGRPVIIRDYPKEIKAFY-MRENDDGKTV 476
Query: 466 NSFDVFI-RGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVG 524
+ D+ + R E+I G+QR E+L R ++ ++ Y+D RYG+ PH GFG+G
Sbjct: 477 AAMDMLVPRVGELIGGSQREERLEYLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLG 536
Query: 525 LERVVMLFCGLNNIRKTSLYPRDP 548
ER+V G++NIR +PR P
Sbjct: 537 FERLVQFATGIDNIRDAIPFPRVP 560
|
Length = 565 |
| >gnl|CDD|177867 PLN02221, PLN02221, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 3e-25
Identities = 82/272 (30%), Positives = 140/272 (51%), Gaps = 20/272 (7%)
Query: 290 DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK 349
D+ G+ A L S QL + C V+ GP FRAE+S+T RHL EF ++ E+
Sbjct: 303 DFFGRQAFLTVSGQLQVETYACA-LSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFAD 361
Query: 350 HYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYP---FEPLKYKPKTL--RLTFEEGV 404
+ M+ + + L + C ++E +AK + + L+ T R+T+ E +
Sbjct: 362 LEDD-MNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAI 420
Query: 405 QMLKDA---GVEID---PLG-DLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMP 457
++L++A G E D G DL +E ER L +++ +K I++ YP ++ FY M
Sbjct: 421 ELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQKP----LIVYNYPKGIKAFY-MR 475
Query: 458 CHDNSLYSNSFDVFI-RGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAP 516
+D+ + DV + + E+I G+QR + + +R + G+ ++ Y+D RYG
Sbjct: 476 LNDDEKTVAAMDVLVPKVGELIGGSQREERYDVIKQRIEEMGLPIEPYEWYLDLRRYGTV 535
Query: 517 PHGGFGVGLERVVMLFCGLNNIRKTSLYPRDP 548
H GFG+G ER+++ G++NIR +PR P
Sbjct: 536 KHCGFGLGFERMILFATGIDNIRDVIPFPRYP 567
|
Length = 572 |
| >gnl|CDD|224111 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-22
Identities = 88/363 (24%), Positives = 144/363 (39%), Gaps = 70/363 (19%)
Query: 228 QDTRLNNRVID-IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKL--IAGSSEGGS 284
++ R R +D I ++ F +S++ R+FL F+E+ TP L I G G +
Sbjct: 159 KEIRYRQRYLDLIVNPESRQTFIKRSKIIRAIREFLDDRGFLEVETPMLQPIPG---GAA 215
Query: 285 A-VFRLDYKGQSACLAQ--SPQLHKQMSICGDFGRVFETGPVFRAED-SYTHRHLCEFTG 340
A F + L +P+L+ + I G F RVFE G FR E TH EFT
Sbjct: 216 ARPFITHHNALDMDLYLRIAPELYLKRLIVGGFERVFEIGRNFRNEGIDTTHNP--EFTM 273
Query: 341 LD---VEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLR 397
L+ + Y ++MD+ + L + K+ Y + + + R
Sbjct: 274 LEFYQAYAD----YEDLMDLTEELIKE-------LAKEVNGTTKVTYGGQEIDFSKPFKR 322
Query: 398 LTFEEGVQMLKDAGVEIDPLGDLNT--------------ESERKLGQLVLEKYG--TE-- 439
+T + ++ GV+ D L D LG L+ E + E
Sbjct: 323 ITMVDALKE--YLGVDFDDLFDDEEAKELAKKHGIEVEKYGTWGLGHLLNELFEELVEAK 380
Query: 440 -----FYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISG--------AQRIHI 486
F +P+ + P N + F++FI G+EI + QR
Sbjct: 381 LIQPTFVT--DHPVEISPL-AKRHRSNPGLTERFELFIGGKEIANAYSELNDPVDQRERF 437
Query: 487 PEFLAERAQ----ACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTS 542
+ E+ A +D ++++ YG PP GG G+G++R+VML +IR
Sbjct: 438 EAQVEEKEAGDDEAMELD----EDFVEALEYGMPPTGGLGIGIDRLVMLLTNSPSIRDVI 493
Query: 543 LYP 545
L+P
Sbjct: 494 LFP 496
|
Length = 502 |
| >gnl|CDD|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 98.2 bits (244), Expect = 9e-22
Identities = 94/348 (27%), Positives = 159/348 (45%), Gaps = 39/348 (11%)
Query: 227 NQDTRLNNRVID-IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTP--KLIAGSSEGG 283
+Q+ R R +D I ++ F ++S++ RQF+++ F+E+ TP ++I G +
Sbjct: 162 DQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASAR 221
Query: 284 SAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDV 343
+ + L +P+L+ + + G F RVFE FR E + RH EFT +++
Sbjct: 222 PFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNE-GISVRHNPEFTMMEL 280
Query: 344 EMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQY--PFEPL-------KYKPK 394
M Y +++++ + LF T+ + K + PFE L KY+P+
Sbjct: 281 YMAYAD-YHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPE 339
Query: 395 TLRL---TFEEGVQMLKDAGVEIDP---LGDLNTE--SERKLGQLVLEKYGTEFYILHRY 446
T F+ + + G+ ++ LG + TE E L+ + TE Y
Sbjct: 340 TDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITE------Y 393
Query: 447 PLAVRPFYTMPCHD-NSLYSNSFDVFIRGEEIISGAQRIHIPEFLAER------AQACGI 499
P V P +D N ++ F+ FI G EI +G ++ E AER A+A G
Sbjct: 394 PAEVSPLARR--NDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGD 451
Query: 500 DVKTI--STYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYP 545
D Y+ + YG PP G G+G++R++MLF + IR L+P
Sbjct: 452 DEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFP 499
|
Length = 505 |
| >gnl|CDD|240414 PTZ00425, PTZ00425, asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Score = 92.4 bits (229), Expect = 9e-20
Identities = 89/346 (25%), Positives = 153/346 (44%), Gaps = 53/346 (15%)
Query: 223 LPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG 282
+PRVN+ + + DI N S N A SS
Sbjct: 269 IPRVNKKNKKGEKREDILNTCNANNNNGNSSSSN--------------------AVSSPA 308
Query: 283 GSAVFRLDYK----GQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEF 338
+ +DYK + A L S QL + ++C G V+ GP FRAE+S+T RHL EF
Sbjct: 309 YPDQYLIDYKKDFFSKQAFLTVSGQLSLE-NLCSSMGDVYTFGPTFRAENSHTSRHLAEF 367
Query: 339 TGLDVE---------MEIKKHYSE--VMDIVDRLFVTIFDGLNNVCK---KELEAVAKQY 384
++ E ME+ + Y + + +++ F I+ NV L+ + +
Sbjct: 368 WMIEPEIAFADLYDNMELAESYIKYCIGYVLNNNFDDIYYFEENVETGLISRLKNILDE- 426
Query: 385 PFEPLKYKPKT-LRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYIL 443
F + Y L + + ++ G+ DL +E ER + + + +K I+
Sbjct: 427 DFAKITYTNVIDLLQPYSDSFEVPVKWGM------DLQSEHERFVAEQIFKKP----VIV 476
Query: 444 HRYPLAVRPFYTMPCHDNSLYSNSFDVFI-RGEEIISGAQRIHIPEFLAERAQACGIDVK 502
+ YP ++ FY D + + DV + + E+I G+QR E L + + ++++
Sbjct: 477 YNYPKDLKAFYMKLNEDQKTVA-AMDVLVPKIGEVIGGSQREDNLERLDKMIKEKKLNME 535
Query: 503 TISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDP 548
+ Y ++G+ PH GFG+G ER++ML G++NI+ T +PR P
Sbjct: 536 SYWWYRQLRKFGSHPHAGFGLGFERLIMLVTGVDNIKDTIPFPRYP 581
|
Length = 586 |
| >gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 1e-18
Identities = 138/597 (23%), Positives = 238/597 (39%), Gaps = 117/597 (19%)
Query: 15 DSSSQSISKKAAKKE--AAKKAKEERRKEAEAAASAASALSIEEEGPLA--------NNY 64
+S+ + +SK A KK A + +E+ KE AA+AA+A A Y
Sbjct: 2 ESNGEPLSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETMDPTQY 61
Query: 65 GDVPLQELQSV----NDPQTGKWSEAVNGREW-TVVGAL-NGS-LKDQEVLIRGRVHTTR 117
L++++++ +P K+ E G+L NG L+D V + GR+ R
Sbjct: 62 RANRLKKVEALRAKGVEPYPYKFDVTHTAPELQEKYGSLENGEELEDVSVSVAGRIMAKR 121
Query: 118 PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK 177
G KLAF +R+ +Q A K + + F + S D++GV P
Sbjct: 122 AFG-KLAFYDLRDDGGKIQLYADKK--RLDLDEEEFEKLHSLVDRGDIVGVTGTP----- 173
Query: 178 GATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPR-----VNQDTRL 232
G T++ E+ I + E +K + LP +Q+TR
Sbjct: 174 GKTKKGELSI----FPT-----------------SFEVLTKCLLMLPDKYHGLTDQETRY 212
Query: 233 NNRVIDIRTLAN---QGIFRIQSQVGNIFRQFLLSENFVEIHTPKL--IAGSSEGGSAVF 287
R +D+ +AN + IFR ++++ + R+FL F+E+ TP L IAG + V
Sbjct: 213 RQRYLDL--IANPEVRDIFRTRAKIISYIRRFLDDRGFLEVETPMLNMIAGGAAARPFVT 270
Query: 288 RLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347
+ L + +LH + + G F RV+E G FR E T RH EFT +
Sbjct: 271 HHNDLNMDLYLRIATELHLKRLVVGGFERVYEIGRQFRNEGIST-RHNPEFTTCEFYQAY 329
Query: 348 KKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAK-QYPFEPLKYKPKTLRLTFEEGVQM 406
Y+++M++ + + KEL K +Y + + P R++ V+
Sbjct: 330 AD-YNDMMELTEEMVSG--------MVKELTGSYKIKYHGIEIDFTPPFRRISMISLVE- 379
Query: 407 LKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEF-------------------------- 440
+ G++ DL ++ EK+ +
Sbjct: 380 -EATGIDFP--ADLKSDEANAYLIAACEKFDVKCPPPQTTGRLLNELFEEFLEETLVQPT 436
Query: 441 YILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISG--------AQRIHIPEFLAE 492
++L +P+ + P P + F++FI G E+ + QR E + +
Sbjct: 437 FVLD-HPVEMSPL-AKPHRSKPGLTERFELFINGRELANAFSELTDPVDQRERFEEQVKQ 494
Query: 493 RA----QACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYP 545
+A +D + + YG PP GG+G+G++R+VML +IR +P
Sbjct: 495 HNAGDDEAMALD----EDFCTALEYGLPPTGGWGLGIDRLVMLLTDSASIRDVIAFP 547
|
Length = 553 |
| >gnl|CDD|105955 PRK12820, PRK12820, bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
Score = 88.5 bits (219), Expect = 2e-18
Identities = 81/259 (31%), Positives = 115/259 (44%), Gaps = 25/259 (9%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
G L+ +EV + G V R G L F+ +R+R +Q A P++ ++
Sbjct: 10 GHLSLDDTGREVCLAGWVDAFRDHGELL-FIHLRDRNGFIQ--AVFSPEAAPADVYELAA 66
Query: 156 SLSNESIVDVIGVVSV-------PDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASR 208
SL E V + G V P +E T +EV +++L ++ + P I D
Sbjct: 67 SLRAEFCVALQGEVQKRLEETENPHIE----TGDIEVFVRELSILAASEALPFAISD--- 119
Query: 209 SEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFV 268
+A A G VN+D RL R +DIR A Q + ++ R FL S F+
Sbjct: 120 -KAMTAGAGSAGAD--AVNEDLRLQYRYLDIRRPAMQDHLAKRHRIIKCARDFLDSRGFL 176
Query: 269 EIHTPKLIAGSSEGGSAVF---RLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFR 325
EI TP L + EG R+ K A L QSPQL KQ+ + F R F+ FR
Sbjct: 177 EIETPILTKSTPEGARDYLVPSRIHPKEFYA-LPQSPQLFKQLLMIAGFERYFQLARCFR 235
Query: 326 AEDSYTHRHLCEFTGLDVE 344
ED +R EFT LD+E
Sbjct: 236 DEDLRPNRQ-PEFTQLDIE 253
|
Length = 706 |
| >gnl|CDD|215291 PLN02532, PLN02532, asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 3e-17
Identities = 73/285 (25%), Positives = 128/285 (44%), Gaps = 19/285 (6%)
Query: 274 KLIAGSSEGGSAV-FRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTH 332
KL G+S + F D+ + L S +LH + C G V+ GP FRA+ +
Sbjct: 349 KLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESYACA-LGNVYTFGPRFRADRIDSA 407
Query: 333 RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQ------YPF 386
RHL E ++VEM + + M+ + F + + C ++++ V+K+
Sbjct: 408 RHLAEMWMVEVEMAFSE-LEDAMNCAEDYFKFLCKWVLENCSEDMKFVSKRIDKTISTRL 466
Query: 387 EPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFY----I 442
E + R+++ E V +LK A D + E L L E Y I
Sbjct: 467 EAIISSS-LQRISYTEAVDLLKQA---TDKKFETKPEWGIALTTEHLSYLADEIYKKPVI 522
Query: 443 LHRYPLAVRPFYTMPCHDNSLYSNSFDVFI-RGEEIISGAQRIHIPEFLAERAQACGIDV 501
++ YP ++PFY + +D+ +FD+ + + +I+G+Q + L R + G+
Sbjct: 523 IYNYPKELKPFY-VRLNDDGKTVAAFDLVVPKVGTVITGSQNEERMDILNARIEELGLPR 581
Query: 502 KTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPR 546
+ Y+D R+G H GF +G E +V+ GL ++R +PR
Sbjct: 582 EQYEWYLDLRRHGTVKHSGFSLGFELMVLFATGLPDVRDAIPFPR 626
|
Length = 633 |
| >gnl|CDD|185588 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (202), Expect = 2e-16
Identities = 121/576 (21%), Positives = 213/576 (36%), Gaps = 119/576 (20%)
Query: 21 ISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQT 80
ISK +A K ++A R + + A+ +S I + YG +
Sbjct: 53 ISKASATKTVTQEASRAPRSKLDLPAAYSSFRGITPISEVRERYGYL------------- 99
Query: 81 GKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLAT 140
A R V + GRV + R +G K+ FV +R + +Q +
Sbjct: 100 -----ASGDRAAQAT-----------VRVAGRVTSVRDIG-KIIFVTIRSNGNELQVVGQ 142
Query: 141 VKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTP 200
V +++ + SL + D+IG VP R +
Sbjct: 143 VGEHFTREDLKKLKVSLR---VGDIIGADGVP---------------------CRMQRGE 178
Query: 201 ITIEDASRSEAEIEKASKEGVQLPRV-------NQDTRLNNRVIDIRTLANQGIF---RI 250
+++ ASR + V P + + D + R D+ T N + +
Sbjct: 179 LSVA-ASRMLILSPYVCTDQVVCPNLRGFTVLQDNDVKYRYRFTDMMT--NPCVIETIKK 235
Query: 251 QSQVGNIFRQFLLSENFVEIHTPKL--IAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQM 308
+ + R + NFVE+ TP L +A + S V + L +P+LH +
Sbjct: 236 RHVMLQALRDYFNERNFVEVETPVLHTVASGANAKSFVTHHNANAMDLFLRVAPELHLKQ 295
Query: 309 SICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKH-YSEVMDIVDRLFVTIFD 367
I G R++E G VFR ED+ H EFT E H Y ++M + + +F +
Sbjct: 296 CIVGGMERIYEIGKVFRNEDA-DRSHNPEFT--SCEFYAAYHTYEDLMPMTEDIFRQLAM 352
Query: 368 GLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERK 427
+N ++ + R++ + +Q + +GVE P +LNT
Sbjct: 353 RVNGTTVVQIYPENAHGNPVTVDLGKPFRRVSVYDEIQRM--SGVEFPPPNELNTPKGIA 410
Query: 428 LGQLVLEKYGT----------------EFYILHRYPLAVRPFYTMPCHDNSLY------- 464
+V+ +Y +F+I R V P + M D+ L+
Sbjct: 411 YMSVVMLRYNIPLPPVRTAAKMFEKLIDFFITDR---VVEPTFVM---DHPLFMSPLAKE 464
Query: 465 -------SNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGID--------VKTISTYID 509
+ F++F+ G E + ++ P R Q +D + T++
Sbjct: 465 QVSRPGLAERFELFVNGIEYCNAYSELNDPHEQYHRFQQQLVDRQGGDEEAMPLDETFLK 524
Query: 510 SFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYP 545
S + G PP G+G+G++R +ML +NIR ++P
Sbjct: 525 SLQVGLPPTAGWGMGIDRALMLLTNSSNIRDGIIFP 560
|
Length = 659 |
| >gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 3e-16
Identities = 87/304 (28%), Positives = 121/304 (39%), Gaps = 56/304 (18%)
Query: 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDV 165
V + G V R +G L F+ VR+ VQ PD E R L NE +V V
Sbjct: 74 RVTLCGWVDLHRDMGG-LTFLDVRDHTGIVQ--VVTLPDE-FPEAHRTANRLRNEYVVAV 129
Query: 166 IGVV---SVPDVEIKGATQQVEV---QIKKLYCVSRAAKTPITIEDASRSEAEIEKASKE 219
G V K T VEV + L V+++ +T A+ +K
Sbjct: 130 EGTVRSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLPFLVT-------TADEQK---- 178
Query: 220 GVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLS-ENFVEIHTPKLIAG 278
+ ++ RL RV+D+R R++ +V + R++L FVEI TP L
Sbjct: 179 ----DSIKEEVRLRYRVLDLRRPQMNANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRS 234
Query: 279 SSEGGSAVFRLDY-------KGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYT 331
+ EG DY G L QSPQL KQM + F R ++ FR ED
Sbjct: 235 TPEGA-----RDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDRYYQIARCFRDEDLRA 289
Query: 332 HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNN--VCK--KELEAVAKQYPFE 387
R EFT LD+E+ + D L LN + + KE++ V PF
Sbjct: 290 DRQ-PEFTQLDMELAF-------TPLEDML------KLNEDLIRQVFKEIKGVQLPNPFP 335
Query: 388 PLKY 391
L Y
Sbjct: 336 RLTY 339
|
Length = 652 |
| >gnl|CDD|234778 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 79.4 bits (197), Expect = 1e-15
Identities = 89/350 (25%), Positives = 146/350 (41%), Gaps = 86/350 (24%)
Query: 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKL--IAGSSEGGSAVFR--------LD---YKG 293
FR +S++ + R+FL + F+E+ TP L IAG G +A R LD Y
Sbjct: 171 TFRKRSKIISAIRRFLDNRGFLEVETPMLQPIAG---GAAA--RPFITHHNALDIDLY-- 223
Query: 294 QSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK---KH 350
L +P+L+ + I G F RV+E G FR E T RH EFT +E
Sbjct: 224 ----LRIAPELYLKRLIVGGFERVYEIGRNFRNEGIDT-RHNPEFT----MLEFYQAYAD 274
Query: 351 YSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQY----PFEPLKYKP----KT----LRL 398
Y+++MD+ + L + + ++ + PF+ L T +
Sbjct: 275 YNDMMDLTEELIRHLAQAVLG--TTKVTYQGTEIDFGPPFKRLTMVDAIKEYTGVDFDDM 332
Query: 399 TFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEF---------YILHRYPLA 449
T EE + K+ G+E++ LG+L+ E + EF +I YP+
Sbjct: 333 TDEEARALAKELGIEVEK--------SWGLGKLINELFE-EFVEPKLIQPTFITD-YPVE 382
Query: 450 VRPFYTMPCHDNSLYSNSFDVFIRGEEIISG----------AQRIHIPEFLAERAQ---- 495
+ P ++ + F++FI G EI + +R + +
Sbjct: 383 ISPL-AKRHREDPGLTERFELFIGGREIANAFSELNDPIDQRERFE--AQVEAKEAGDDE 439
Query: 496 ACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYP 545
A +D ++ + YG PP GG G+G++R+VML +IR L+P
Sbjct: 440 AMFMDE----DFLRALEYGMPPTGGLGIGIDRLVMLLTDSPSIRDVILFP 485
|
Length = 491 |
| >gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 77.8 bits (193), Expect = 5e-15
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 22/122 (18%)
Query: 452 PFYTMPCHDNSLY----------SNSFDVFIRGEEIISGAQRIHIPEFLAERA-QACGID 500
PF TMP ++ + ++D+ + G E+ G+ RIH PE + E+ + GI
Sbjct: 450 PF-TMPKDEDLDELETTDPGKARAYAYDLVLNGYELGGGSIRIHRPE-IQEKVFEILGIS 507
Query: 501 VKTIST----YIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYP-----RDPLRI 551
+ +D+ +YGAPPHGG GL+R+VML G ++IR +P +D L
Sbjct: 508 EEEAEEKFGFLLDALKYGAPPHGGIAFGLDRLVMLLAGADSIRDVIAFPKTQSAQDLLTG 567
Query: 552 AP 553
AP
Sbjct: 568 AP 569
|
Length = 588 |
| >gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 8e-15
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 21/121 (17%)
Query: 452 PFYTMP---------CHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERA-QACGIDV 501
PF TMP S+ + ++D+ + G E+ G+ RIH PE + E+ + GI
Sbjct: 449 PF-TMPKPEDLELLEADPESVRARAYDLVLNGYELGGGSIRIHDPE-IQEKVFEILGISP 506
Query: 502 KTIST----YIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPR-----DPLRIA 552
+ +++F+YGAPPHGG GL+R+VML G +IR +P+ D L A
Sbjct: 507 EEAEEKFGFLLEAFKYGAPPHGGIAFGLDRLVMLLTGAESIRDVIAFPKTQQAADLLTNA 566
Query: 553 P 553
P
Sbjct: 567 P 567
|
Length = 585 |
| >gnl|CDD|239766 cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-14
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDV 165
EV + G VH+ R G L F+ +R+ VQ + E L ES+V V
Sbjct: 1 EVTLAGWVHSRRDHG-GLIFIDLRDGSGIVQVVV---NKEELGEFFEEAEKLRTESVVGV 56
Query: 166 IGVVSVPDVEIKGATQQVEVQIKKLYCVSR 195
G V V E AT ++E+Q ++L +S+
Sbjct: 57 TGTV-VKRPEGNLATGEIELQAEELEVLSK 85
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like AspRSs which are non-discriminating and can charge both tRNAAsp and tRNAAsn. E. coli cells have two isoforms of LysRSs (LysS and LysU) encoded by two distinct genes, which are differentially regulated. The cytoplasmic and the mitochondrial isoforms of human LysRS are encoded by a single gene. Yeast cytoplasmic and mitochondrial LysRSs participate in mitochondrial import of cytoplasmic tRNAlysCUU. In addition to their housekeeping role, human LysRS may function as a signaling molecule that activates immune cells. Tomato LysRS may participate in a process possibly connected to conditions of oxidative-stress conditions or heavy metal uptake. It is known that human tRNAlys and LysRS are specifically packaged into HIV-1 suggesting a role for LysRS in tRNA packaging. AsnRS is immunodominant antigen of the filarial nematode Brugia malayai and is of interest as a target for anti-parasitic drug design. Human AsnRS has been shown to be a pro-inflammatory chemokine which interacts with CCR3 chemokine receptors on T cells, immature dendritic cells and macrophages. Length = 85 |
| >gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 5e-13
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 14/108 (12%)
Query: 452 PFYTMP---------CHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGID-- 500
PF TMP + ++D+ + G E+ G+ RIH PE + + GID
Sbjct: 446 PF-TMPKDEDLENLEAAPEEALAEAYDLVLNGVELGGGSIRIHDPEVQKKVFEILGIDPE 504
Query: 501 --VKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPR 546
+ +++F+YG PPH GF +GL+R++ML G +NIR +P+
Sbjct: 505 EAREKFGFLLEAFKYGTPPHAGFALGLDRLMMLLTGTDNIRDVIAFPK 552
|
Asparate--tRNA ligases in this family may be discriminating (6.1.1.12) or nondiscriminating (6.1.1.23). In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences [Protein synthesis, tRNA aminoacylation]. Length = 583 |
| >gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 2e-09
Identities = 52/281 (18%), Positives = 78/281 (27%), Gaps = 90/281 (32%)
Query: 258 FRQFLLSENFVEIHTPKLIAGSSEGGSA------VFRLDYKGQSACLAQSPQLHKQMS-- 309
R+F+ F E+ TP + + + + L + +
Sbjct: 9 LRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFV 68
Query: 310 --ICGDFGRVFETGPVFRAED-SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIF 366
I R+ E GP FR E R + EFT L+ E+ F
Sbjct: 69 SHIRKLPLRLAEIGPAFRNEGGRRGLRRVREFTQLEGEV----------------FGE-- 110
Query: 367 DGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESER 426
E + + LT E +L+ G+++D
Sbjct: 111 ------------------DGEEASEFEELIELTEE----LLRALGIKLDI---------- 138
Query: 427 KLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHI 486
+ +EK EF P RG EI SG R
Sbjct: 139 ----VFVEKTPGEFSPGG-AGPGFEIEVDHPEG-------------RGLEIGSGGYRQDE 180
Query: 487 PEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLER 527
A+ ++ Y PP GFG+GLER
Sbjct: 181 QARAADLYF-----------LDEALEYRYPPTIGFGLGLER 210
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. Length = 211 |
| >gnl|CDD|173607 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 3e-09
Identities = 117/573 (20%), Positives = 218/573 (38%), Gaps = 108/573 (18%)
Query: 27 KKEAAKKAKEERRKEAEAAASAA------SALSIEEEGPLANNYGDVPLQELQSVNDPQ- 79
KK + +A ++++KE EA S E++ N Y P + +++ P+
Sbjct: 61 KKVRSVQASKDKKKEEEAEVDPRLYYENRSKFIQEQKAKGINPY---PHKFERTITVPEF 117
Query: 80 TGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLA 139
K+ + +G L+D + + GR+ G KL F + + +Q LA
Sbjct: 118 VEKYQDLASGEH----------LEDTILNVTGRIMRVSASGQKLRFFDLVGDGAKIQVLA 167
Query: 140 TVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT 199
+K F D++G+V P KG ++ + K+ +S
Sbjct: 168 NFAFHDHTKS--NFAECYDKIRRGDIVGIVGFPGKSKKG---ELSIFPKETIILSPCLHM 222
Query: 200 -PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLAN-QGIFRIQSQVGNI 257
P+ K G++ + + R R +D+ + + F ++++ N
Sbjct: 223 LPM----------------KYGLK----DTEIRYRQRYLDLMINESTRSTFITRTKIINY 262
Query: 258 FRQFLLSENFVEIHTP--KLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFG 315
R FL F+E+ TP L+AG + + + L + +L +M I G
Sbjct: 263 LRNFLNDRGFIEVETPTMNLVAGGANARPFITHHNDLDLDLYLRIATELPLKMLIVGGID 322
Query: 316 RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVM---DIVDRLFVTIF------ 366
+V+E G VFR E + H EFT + Y + D +L + +F
Sbjct: 323 KVYEIGKVFRNE-GIDNTHNPEFTSCEFYWAYADFYDLIKWSEDFFSQLVMHLFGTYKIL 381
Query: 367 ---DGLNN--------------VCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKD 409
DG +ELE + +P P+T+ + + ++K+
Sbjct: 382 YNKDGPEKDPIEIDFTPPYPKVSIVEELEKLTNTKLEQPFD-SPETI----NKMINLIKE 436
Query: 410 AGVEIDPLGDLNTESERKL-----GQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLY 464
+E+ N + KL + KY + + + +P + P L
Sbjct: 437 NKIEMP-----NPPTAAKLLDQLASHFIENKYPNKPFFIIEHPQIMSPLAKYHRSKPGL- 490
Query: 465 SNSFDVFIRGEEIISGAQRIHIPE-----FLAER-------AQACGIDVKTISTYIDSFR 512
+ ++FI G+E+++ ++ P F A++ A+A D + + S
Sbjct: 491 TERLEMFICGKEVLNAYTELNDPFKQKECFSAQQKDREKGDAEAFQFD----AAFCTSLE 546
Query: 513 YGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYP 545
YG PP GG G+G++R+ M N I+ L+P
Sbjct: 547 YGLPPTGGLGLGIDRITMFLTNKNCIKDVILFP 579
|
Length = 585 |
| >gnl|CDD|105955 PRK12820, PRK12820, bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 1e-08
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 9/101 (8%)
Query: 462 SLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTIST----YIDSFRYGAPP 517
L S ++D+ + GEE+ G+ RI+ + A G+ + I ++ +F + APP
Sbjct: 485 DLRSRAYDLVVNGEELGGGSIRINDKDIQLRIFAALGLSEEDIEDKFGFFLRAFDFAAPP 544
Query: 518 HGGFGVGLERVVMLFCGLNNIRKTSLYPRD-----PLRIAP 553
HGG +GL+RVV + +IR+ +P++ PL AP
Sbjct: 545 HGGIALGLDRVVSMILQTPSIREVIAFPKNRSAACPLTGAP 585
|
Length = 706 |
| >gnl|CDD|239812 cd04317, EcAspRS_like_N, EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 3e-08
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 25/148 (16%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
G L S QEV + G V R G L F+ +R+R VQ + P+
Sbjct: 6 GELRESHVGQEVTLCGWVQRRRDHG-GLIFIDLRDRYGIVQVV--FDPEE--APEFELAE 60
Query: 156 SLSNESIVDVIGVVSV---PDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAE 212
L NES++ V G V V K T ++EV +L +++A P I+D
Sbjct: 61 KLRNESVIQVTGKVRARPEGTVNPKLPTGEIEVVASELEVLNKAKTLPFEIDDDV----- 115
Query: 213 IEKASKEGVQLPRVNQDTRLNNRVIDIR 240
V+++ RL R +D+R
Sbjct: 116 ------------NVSEELRLKYRYLDLR 131
|
These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with mitochondrial protein synthesis. Human mtAspRS participates in mitochondrial biosynthesis; this enzyme been shown to charge E.coli native tRNAsp in addition to in vitro transcribed human mitochondrial tRNAsp. T. thermophilus is rare among bacteria in having both a D_AspRS and a ND_AspRS. H.pylori ND-AspRS can charge both tRNAASp and tRNAAsn, it is fractionally more efficient at aminoacylating tRNAAsp over tRNAAsn. The H.pylori genome does not contain AsnRS. Length = 135 |
| >gnl|CDD|239811 cd04316, ND_PkAspRS_like_N, ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 3e-07
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 8/100 (8%)
Query: 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 164
+EV + G VH R +G + FV++R+R VQ T V KE+ + VR LS ES++
Sbjct: 13 EEVTVAGWVHEIRDLG-GIKFVILRDREGIVQ--VTAPKKKVDKELFKTVRKLSRESVIS 69
Query: 165 VIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIE 204
V G V A VE+ +++ +S AKTP+ ++
Sbjct: 70 VTGTVK----AEPKAPNGVEIIPEEIEVLSE-AKTPLPLD 104
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes. Length = 108 |
| >gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 8e-07
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 467 SFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTIST----YIDSFRYGAPPHGGFG 522
++D+ G EI G+ RI+ + + +A G+ + + +++ GAPPHGG
Sbjct: 537 AYDMVYNGVEIGGGSLRIYRRDVQQKVLEAIGLSPEEAESKFGYLLEALDMGAPPHGGIA 596
Query: 523 VGLERVVMLFCGLNNIRKTSLYPR 546
GL+R+VML G +IR +P+
Sbjct: 597 YGLDRLVMLLAGAKSIRDVIAFPK 620
|
Length = 652 |
| >gnl|CDD|225178 COG2269, COG2269, Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 68/314 (21%), Positives = 116/314 (36%), Gaps = 43/314 (13%)
Query: 258 FRQFLLSENFVEIHTPKL-IAGSSEGGSAVFRLDY------KGQSACLAQSPQLHKQMSI 310
R+F +E+ TP L +A ++ F ++ KG+ L SP+ H + +
Sbjct: 26 IRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLL 85
Query: 311 CGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLN 370
G +F+ G VFR E+ H EFT L+ + Y +M+ VD L + +
Sbjct: 86 AAGSGPIFQLGKVFRNEEM-GRLHNPEFTMLEW-YRVGCDYYRLMNEVDDLLQLVLE--- 140
Query: 371 NVCKKELEAVAKQYPF-EPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLG 429
E E ++ Q F L P L E + G+ D +T +
Sbjct: 141 ---CVEAERLSYQEAFLRYLGIDP--LSADKTELREAAAKLGLSAATDEDWDTLLQLLFV 195
Query: 430 QLVLEKYGTE-FYILHRYP-----LA-VRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQ 482
+ V G E L+ +P LA + + + F+++ +G E+ +G
Sbjct: 196 EGVEPNLGKERPTFLYHFPASQAALAQIST-------GDPRVAERFELYYKGIELANGFH 248
Query: 483 RIHIPE-----FLAERAQACGIDVKTISTYIDSFRYGA----PPHGGFGVGLERVVMLFC 533
+ F + + + ID A PP G +G +R+VML
Sbjct: 249 ELTDAAEQRRRFEQDNKERARRGLPQYP--IDEDFLAALARMPPCSGVALGFDRLVMLAL 306
Query: 534 GLNNIRKTSLYPRD 547
G +I +P
Sbjct: 307 GAESIDDVIAFPVA 320
|
Length = 322 |
| >gnl|CDD|216440 pfam01336, tRNA_anti, OB-fold nucleic acid binding domain | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-05
Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 107 VLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVI 166
V + GRV + R G K+AF+ +R+ ++Q + +E + + L +V V
Sbjct: 1 VTVAGRVTSVRRSGGKVAFLTLRDGTGSIQVVLF------KEEAEKLAKKLKEGDVVLVT 54
Query: 167 GVVSVPDVEIKGATQQVEVQIKKLY 191
G V ++E+ ++++
Sbjct: 55 GKVKKRP------GGELELVVEEIE 73
|
This family contains OB-fold domains that bind to nucleic acids. The family includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl -tRNA synthetases (See pfam00152). Aminoacyl-tRNA synthetases catalyze the addition of an amino acid to the appropriate tRNA molecule EC:6.1.1.-. This family also includes part of RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family. This domain is also found at the C-terminus of bacterial DNA polymerase III alpha chain. Length = 75 |
| >gnl|CDD|232984 TIGR00462, genX, EF-P lysine aminoacylase GenX | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 5e-05
Identities = 69/326 (21%), Positives = 113/326 (34%), Gaps = 89/326 (27%)
Query: 261 FLLSENFVEIHTPKLI-AGSSEGGSAVFRLDYKGQSAC-----LAQSPQLH-KQMSICGD 313
F +E+ TP L A ++ F ++ G L SP+ K++ +
Sbjct: 1 FFAERGVLEVETPLLSPAPVTDPHLDAFATEFVGPDGQGRPLYLQTSPEYAMKRL-LAAG 59
Query: 314 FGRVFETGPVFRAEDSYTHRHLCEFT-------GLDVEMEIKKHYSEVMDIVDRLFVTIF 366
G +F+ VFR + RH EFT G D Y ++MD V+ L +
Sbjct: 60 SGPIFQICKVFRNGER-GRRHNPEFTMLEWYRPGFD--------YHDLMDEVEALLQELL 110
Query: 367 DGLNNVCKKELEAVAKQYPFEPLKYK----------PKTLRLTFEEGVQMLKDAGVEIDP 416
P E L Y+ P L + E G+
Sbjct: 111 GDPFA-------------PAERLSYQEAFLRYAGIDP--LTASLAELQAAAAAHGIRASE 155
Query: 417 LGDLNT--------ESERKLGQLVLEKYGTEFYILHRYP-----LAVRPFYTMPCHDNSL 463
D + + E LG L+ YP LA R D+
Sbjct: 156 EDDRDDLLDLLFSEKVEPHLGFGRP-------TFLYDYPASQAALA-R-----ISPDDPR 202
Query: 464 YSNSFDVFIRGEEIISG--------AQRIHIPEFLAERA--QACGIDVKTISTY-IDSFR 512
+ F+++I+G E+ +G QR F A+ A +A G+ + + +
Sbjct: 203 VAERFELYIKGLELANGFHELTDAAEQR---RRFEADNALRKALGLPRYPLDERFLAALE 259
Query: 513 YGAPPHGGFGVGLERVVMLFCGLNNI 538
G P G +G++R++ML G ++I
Sbjct: 260 AGLPECSGVALGVDRLLMLALGADSI 285
|
Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown [Unknown function, General]. Length = 290 |
| >gnl|CDD|239814 cd04319, PhAsnRS_like_N, PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 2e-04
Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDV 165
+V + G V+ R VG K AF+V+R+ VQ V +++E R + + ES V V
Sbjct: 1 KVTLAGWVYRKREVGKK-AFIVLRDSTGIVQ---AVFSKDLNEEAYREAKKVGIESSVIV 56
Query: 166 IGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASR 208
G V A EV +KL + PIT EDAS
Sbjct: 57 EGAV----KADPRAPGGAEVHGEKLEIIQNVEFFPIT-EDASD 94
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Length = 103 |
| >gnl|CDD|236555 PRK09537, pylS, pyrolysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 55/242 (22%), Positives = 85/242 (35%), Gaps = 55/242 (22%)
Query: 130 ERVSTVQCLATVKPDSVSKEM----VRFVRSLSNES--IVDVIGVVSVPDVEIKGATQQV 183
E + V+ P K M VR + L N + G VP + + +
Sbjct: 88 EDKTQVKVKVVSAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKA 147
Query: 184 E------VQIKKL-YCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRV 236
Q +L +S K + E E E E S+ L ++ ++ R
Sbjct: 148 PAPALTPSQKDRLETLLSPKDKISLNSEKPKFKELESELVSRRKNDLKQMYEEDR----- 202
Query: 237 IDIRTLANQGIFRIQSQVGNIFR---QFLLSENFVEIHTPKLIAGSS----------EGG 283
+ +G + R +F + F+EI +P LI E
Sbjct: 203 --------------EDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELS 248
Query: 284 SAVFRLDYKGQSACLAQ--SPQL----HKQMSICGDFGRVFETGPVFRAEDSYTHRHLCE 337
+FR+D ++ CL +P L K I D ++FE GP +R E S HL E
Sbjct: 249 KQIFRVD---KNFCLRPMLAPGLYNYLRKLDRILPDPIKIFEIGPCYRKE-SDGKEHLEE 304
Query: 338 FT 339
FT
Sbjct: 305 FT 306
|
Length = 417 |
| >gnl|CDD|235095 PRK02983, lysS, lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 7e-04
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 513 YGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYP 545
Y PP GG G+G++R+VML G +IR+T +P
Sbjct: 1057 YAMPPTGGLGMGVDRLVMLLTG-RSIRETLPFP 1088
|
Length = 1094 |
| >gnl|CDD|223095 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.004
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 24/86 (27%)
Query: 467 SFDVFIRGEEI-----ISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGF 521
S +V + I G +H P L +A GID + S + F
Sbjct: 263 SAEVDVYCPGCGGWLEILGCGMVH-PNVL----EAVGIDPEEYSGF------------AF 305
Query: 522 GVGLERVVMLFCGLNNIRKTSLYPRD 547
G+GLER+ ML G+ +IR LY D
Sbjct: 306 GLGLERLAMLKYGIPDIR--DLYEND 329
|
Length = 335 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 553 | |||
| KOG0556 | 533 | consensus Aspartyl-tRNA synthetase [Translation, r | 100.0 | |
| PLN02850 | 530 | aspartate-tRNA ligase | 100.0 | |
| PTZ00401 | 550 | aspartyl-tRNA synthetase; Provisional | 100.0 | |
| KOG1885 | 560 | consensus Lysyl-tRNA synthetase (class II) [Transl | 100.0 | |
| COG0017 | 435 | AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl | 100.0 | |
| PLN02502 | 553 | lysyl-tRNA synthetase | 100.0 | |
| PRK05159 | 437 | aspC aspartyl-tRNA synthetase; Provisional | 100.0 | |
| TIGR00458 | 428 | aspS_arch aspartyl-tRNA synthetase, archaeal type. | 100.0 | |
| TIGR00499 | 496 | lysS_bact lysyl-tRNA synthetase, eukaryotic and no | 100.0 | |
| PRK12445 | 505 | lysyl-tRNA synthetase; Reviewed | 100.0 | |
| PTZ00417 | 585 | lysine-tRNA ligase; Provisional | 100.0 | |
| PRK00484 | 491 | lysS lysyl-tRNA synthetase; Reviewed | 100.0 | |
| TIGR00457 | 453 | asnS asparaginyl-tRNA synthetase. In a multiple se | 100.0 | |
| PRK03932 | 450 | asnC asparaginyl-tRNA synthetase; Validated | 100.0 | |
| COG1190 | 502 | LysU Lysyl-tRNA synthetase (class II) [Translation | 100.0 | |
| PLN02221 | 572 | asparaginyl-tRNA synthetase | 100.0 | |
| PTZ00385 | 659 | lysyl-tRNA synthetase; Provisional | 100.0 | |
| PTZ00425 | 586 | asparagine-tRNA ligase; Provisional | 100.0 | |
| PLN02603 | 565 | asparaginyl-tRNA synthetase | 100.0 | |
| PRK02983 | 1094 | lysS lysyl-tRNA synthetase; Provisional | 100.0 | |
| PLN02532 | 633 | asparagine-tRNA synthetase | 100.0 | |
| TIGR00459 | 583 | aspS_bact aspartyl-tRNA synthetase, bacterial type | 100.0 | |
| COG0173 | 585 | AspS Aspartyl-tRNA synthetase [Translation, riboso | 100.0 | |
| PLN02903 | 652 | aminoacyl-tRNA ligase | 100.0 | |
| PRK00476 | 588 | aspS aspartyl-tRNA synthetase; Validated | 100.0 | |
| PRK12820 | 706 | bifunctional aspartyl-tRNA synthetase/aspartyl/glu | 100.0 | |
| cd00776 | 322 | AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class | 100.0 | |
| KOG0555 | 545 | consensus Asparaginyl-tRNA synthetase [Translation | 100.0 | |
| PRK06462 | 335 | asparagine synthetase A; Reviewed | 100.0 | |
| PF00152 | 335 | tRNA-synt_2: tRNA synthetases class II (D, K and N | 100.0 | |
| KOG0554 | 446 | consensus Asparaginyl-tRNA synthetase (mitochondri | 100.0 | |
| TIGR00462 | 304 | genX lysyl-tRNA synthetase-like protein GenX. Many | 100.0 | |
| KOG2411 | 628 | consensus Aspartyl-tRNA synthetase, mitochondrial | 100.0 | |
| cd00775 | 329 | LysRS_core Lys_tRNA synthetase (LysRS) class II co | 100.0 | |
| cd00669 | 269 | Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl | 100.0 | |
| PRK09350 | 306 | poxB regulator PoxA; Provisional | 100.0 | |
| cd00777 | 280 | AspRS_core Asp tRNA synthetase (aspRS) class II co | 100.0 | |
| COG2269 | 322 | Truncated, possibly inactive, lysyl-tRNA synthetas | 100.0 | |
| cd04317 | 135 | EcAspRS_like_N EcAspRS_like_N: N-terminal, anticod | 99.88 | |
| cd04322 | 108 | LysRS_N LysRS_N: N-terminal, anticodon recognition | 99.86 | |
| cd04320 | 102 | AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon r | 99.8 | |
| cd04316 | 108 | ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, a | 99.78 | |
| cd04319 | 103 | PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticod | 99.76 | |
| PRK09537 | 417 | pylS pyrolysyl-tRNA synthetase; Reviewed | 99.7 | |
| cd04100 | 85 | Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, ant | 99.65 | |
| cd04323 | 84 | AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, a | 99.61 | |
| PTZ00213 | 348 | asparagine synthetase A; Provisional | 99.56 | |
| cd00645 | 309 | AsnA Asparagine synthetase (aspartate-ammonia liga | 99.56 | |
| TIGR02367 | 453 | PylS pyrrolysyl-tRNA synthetase. PylS is the archa | 99.56 | |
| cd04321 | 86 | ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, a | 99.55 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl s | 99.54 | |
| cd04318 | 82 | EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticod | 99.53 | |
| PRK05425 | 327 | asparagine synthetase AsnA; Provisional | 99.52 | |
| PF01409 | 247 | tRNA-synt_2d: tRNA synthetases class II core domai | 99.45 | |
| PRK00488 | 339 | pheS phenylalanyl-tRNA synthetase subunit alpha; V | 99.44 | |
| TIGR00669 | 330 | asnA aspartate--ammonia ligase, AsnA-type. The fac | 99.39 | |
| COG0016 | 335 | PheS Phenylalanyl-tRNA synthetase alpha subunit [T | 99.31 | |
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 99.3 | |
| PTZ00326 | 494 | phenylalanyl-tRNA synthetase alpha chain; Provisio | 99.27 | |
| TIGR00468 | 294 | pheS phenylalanyl-tRNA synthetase, alpha subunit. | 99.14 | |
| PLN02788 | 402 | phenylalanine-tRNA synthetase | 99.04 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 99.03 | |
| cd00773 | 261 | HisRS-like_core Class II Histidinyl-tRNA synthetas | 98.95 | |
| PF01336 | 75 | tRNA_anti-codon: OB-fold nucleic acid binding doma | 98.91 | |
| TIGR00470 | 533 | sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam | 98.72 | |
| TIGR00442 | 397 | hisS histidyl-tRNA synthetase. This model finds a | 98.69 | |
| TIGR00443 | 314 | hisZ_biosyn_reg ATP phosphoribosyltransferase, reg | 98.61 | |
| TIGR00469 | 460 | pheS_mito phenylalanyl-tRNA synthetase, mitochondr | 98.59 | |
| cd00496 | 218 | PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe | 98.5 | |
| PRK12293 | 281 | hisZ ATP phosphoribosyltransferase regulatory subu | 98.49 | |
| PRK12421 | 392 | ATP phosphoribosyltransferase regulatory subunit; | 98.43 | |
| CHL00201 | 430 | syh histidine-tRNA synthetase; Provisional | 98.43 | |
| PLN02972 | 763 | Histidyl-tRNA synthetase | 98.43 | |
| PLN02530 | 487 | histidine-tRNA ligase | 98.41 | |
| PRK12420 | 423 | histidyl-tRNA synthetase; Provisional | 98.37 | |
| PRK12292 | 391 | hisZ ATP phosphoribosyltransferase regulatory subu | 98.35 | |
| PF00587 | 173 | tRNA-synt_2b: tRNA synthetase class II core domain | 98.32 | |
| COG0124 | 429 | HisS Histidyl-tRNA synthetase [Translation, riboso | 98.18 | |
| cd00670 | 235 | Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t | 98.02 | |
| COG2502 | 330 | AsnA Asparagine synthetase A [Amino acid transport | 97.96 | |
| PRK00037 | 412 | hisS histidyl-tRNA synthetase; Reviewed | 97.92 | |
| cd00778 | 261 | ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) | 97.82 | |
| cd00772 | 264 | ProRS_core Prolyl-tRNA synthetase (ProRS) class II | 97.78 | |
| cd00774 | 254 | GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik | 97.69 | |
| cd00779 | 255 | ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla | 97.68 | |
| cd00770 | 297 | SerRS_core Seryl-tRNA synthetase (SerRS) class II | 97.68 | |
| PRK09194 | 565 | prolyl-tRNA synthetase; Provisional | 97.63 | |
| cd00771 | 298 | ThrRS_core Threonyl-tRNA synthetase (ThrRS) class | 97.61 | |
| TIGR00409 | 568 | proS_fam_II prolyl-tRNA synthetase, family II. Pro | 97.61 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 97.55 | |
| PF13393 | 311 | tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI | 97.52 | |
| PRK03991 | 613 | threonyl-tRNA synthetase; Validated | 97.46 | |
| PRK05431 | 425 | seryl-tRNA synthetase; Provisional | 97.44 | |
| PRK12305 | 575 | thrS threonyl-tRNA synthetase; Reviewed | 97.43 | |
| TIGR00414 | 418 | serS seryl-tRNA synthetase. This model represents | 97.4 | |
| PRK00960 | 517 | seryl-tRNA synthetase; Provisional | 97.37 | |
| PRK14799 | 545 | thrS threonyl-tRNA synthetase; Provisional | 97.35 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 97.32 | |
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 97.32 | |
| PRK08661 | 477 | prolyl-tRNA synthetase; Provisional | 97.3 | |
| TIGR00418 | 563 | thrS threonyl-tRNA synthetase. This model represen | 97.3 | |
| PRK12325 | 439 | prolyl-tRNA synthetase; Provisional | 97.19 | |
| TIGR00408 | 472 | proS_fam_I prolyl-tRNA synthetase, family I. Proly | 97.13 | |
| PLN02837 | 614 | threonine-tRNA ligase | 96.94 | |
| PRK12295 | 373 | hisZ ATP phosphoribosyltransferase regulatory subu | 96.82 | |
| cd04489 | 78 | ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol | 96.81 | |
| PLN02678 | 448 | seryl-tRNA synthetase | 96.78 | |
| KOG2784 | 483 | consensus Phenylalanyl-tRNA synthetase, beta subun | 96.65 | |
| PF13742 | 99 | tRNA_anti_2: OB-fold nucleic acid binding domain | 96.59 | |
| PRK04173 | 456 | glycyl-tRNA synthetase; Provisional | 96.54 | |
| cd04487 | 73 | RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB f | 96.04 | |
| KOG1936 | 518 | consensus Histidyl-tRNA synthetase [Translation, r | 96.01 | |
| COG1107 | 715 | Archaea-specific RecJ-like exonuclease, contains D | 95.97 | |
| PLN02320 | 502 | seryl-tRNA synthetase | 95.92 | |
| PRK12294 | 272 | hisZ ATP phosphoribosyltransferase regulatory subu | 95.75 | |
| TIGR00415 | 520 | serS_MJ seryl-tRNA synthetase, Methanococcus janna | 95.58 | |
| cd04485 | 84 | DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp | 95.43 | |
| PRK07373 | 449 | DNA polymerase III subunit alpha; Reviewed | 95.38 | |
| cd04478 | 95 | RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor | 95.34 | |
| cd03524 | 75 | RPA2_OBF_family RPA2_OBF_family: A family of oligo | 95.27 | |
| COG0442 | 500 | ProS Prolyl-tRNA synthetase [Translation, ribosoma | 95.19 | |
| cd04474 | 104 | RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor | 95.13 | |
| cd04482 | 91 | RPA2_OBF_like RPA2_OBF_like: A subgroup of unchara | 94.97 | |
| cd04492 | 83 | YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol | 94.48 | |
| COG0423 | 558 | GRS1 Glycyl-tRNA synthetase (class II) [Translatio | 94.35 | |
| PF04076 | 103 | BOF: Bacterial OB fold (BOF) protein; InterPro: IP | 94.3 | |
| cd04483 | 92 | hOBFC1_like hOBFC1_like: A subfamily of OB folds s | 94.25 | |
| PRK06253 | 529 | O-phosphoseryl-tRNA synthetase; Reviewed | 94.09 | |
| KOG2324 | 457 | consensus Prolyl-tRNA synthetase [Translation, rib | 93.98 | |
| PRK09616 | 552 | pheT phenylalanyl-tRNA synthetase subunit beta; Re | 93.48 | |
| PRK07374 | 1170 | dnaE DNA polymerase III subunit alpha; Validated | 93.46 | |
| COG0441 | 589 | ThrS Threonyl-tRNA synthetase [Translation, riboso | 93.24 | |
| cd04490 | 79 | PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds | 93.24 | |
| TIGR00389 | 551 | glyS_dimeric glycyl-tRNA synthetase, dimeric type. | 93.19 | |
| COG0172 | 429 | SerS Seryl-tRNA synthetase [Translation, ribosomal | 93.18 | |
| PRK05673 | 1135 | dnaE DNA polymerase III subunit alpha; Validated | 92.91 | |
| TIGR00156 | 126 | conserved hypothetical protein TIGR00156. As of th | 92.72 | |
| PF10451 | 256 | Stn1: Telomere regulation protein Stn1; InterPro: | 92.7 | |
| PRK06826 | 1151 | dnaE DNA polymerase III DnaE; Reviewed | 92.39 | |
| PRK06920 | 1107 | dnaE DNA polymerase III DnaE; Reviewed | 92.17 | |
| cd04479 | 101 | RPA3 RPA3: A subfamily of OB folds similar to huma | 92.13 | |
| PRK05672 | 1046 | dnaE2 error-prone DNA polymerase; Validated | 91.65 | |
| PRK10053 | 130 | hypothetical protein; Provisional | 91.62 | |
| COG3111 | 128 | Periplasmic protein with OB-fold [Function unknown | 91.54 | |
| PRK07279 | 1034 | dnaE DNA polymerase III DnaE; Reviewed | 90.7 | |
| TIGR00617 | 608 | rpa1 replication factor-a protein 1 (rpa1). This f | 90.4 | |
| COG1570 | 440 | XseA Exonuclease VII, large subunit [DNA replicati | 89.52 | |
| cd00769 | 198 | PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR | 89.18 | |
| PRK07459 | 121 | single-stranded DNA-binding protein; Provisional | 88.95 | |
| PF08661 | 109 | Rep_fac-A_3: Replication factor A protein 3; Inter | 88.4 | |
| KOG2783 | 436 | consensus Phenylalanyl-tRNA synthetase [Translatio | 88.39 | |
| COG4085 | 204 | Predicted RNA-binding protein, contains TRAM domai | 87.58 | |
| cd04488 | 75 | RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB f | 87.12 | |
| PRK15491 | 374 | replication factor A; Provisional | 87.0 | |
| PRK08486 | 182 | single-stranded DNA-binding protein; Provisional | 86.97 | |
| COG3705 | 390 | HisZ ATP phosphoribosyltransferase involved in his | 86.19 | |
| PRK06863 | 168 | single-stranded DNA-binding protein; Provisional | 86.1 | |
| PRK07275 | 162 | single-stranded DNA-binding protein; Provisional | 85.71 | |
| TIGR00237 | 432 | xseA exodeoxyribonuclease VII, large subunit. This | 85.6 | |
| PF00436 | 104 | SSB: Single-strand binding protein family; InterPr | 85.58 | |
| PRK06751 | 173 | single-stranded DNA-binding protein; Provisional | 85.34 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 85.09 | |
| PF12869 | 144 | tRNA_anti-like: tRNA_anti-like; InterPro: IPR02442 | 85.0 | |
| PRK00286 | 438 | xseA exodeoxyribonuclease VII large subunit; Revie | 84.96 | |
| PRK02801 | 101 | primosomal replication protein N; Provisional | 83.47 | |
| PRK06752 | 112 | single-stranded DNA-binding protein; Validated | 83.38 | |
| PRK12366 | 637 | replication factor A; Reviewed | 83.26 | |
| PRK06293 | 161 | single-stranded DNA-binding protein; Provisional | 82.72 | |
| KOG2509 | 455 | consensus Seryl-tRNA synthetase [Translation, ribo | 82.5 | |
| PRK13480 | 314 | 3'-5' exoribonuclease YhaM; Provisional | 81.98 | |
| PRK07274 | 131 | single-stranded DNA-binding protein; Provisional | 81.18 | |
| PRK07211 | 485 | replication factor A; Reviewed | 80.66 |
| >KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-147 Score=1111.41 Aligned_cols=525 Identities=60% Similarity=0.916 Sum_probs=501.2
Q ss_pred ccCCcccccChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCcCCcCccchhhhhccCCCCCCcccccccCcce
Q 008808 13 EVDSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVNGREW 92 (553)
Q Consensus 13 ~~~~~~~~~sk~~~kk~~k~~~k~~k~a~~~~~~~~~~~~~~~~~d~~~~~yg~~~~~~~~~~~~pyphkf~~~~~~~~~ 92 (553)
..++.|+ +|||++||.+|+++|++||.+++..++ ++..++++|...++||++++.++++ .++..|
T Consensus 6 ~~gE~gk-~SKK~~kk~a~~~eK~~~k~e~~~~~~--~a~~~~~ed~~~~~yg~~~l~~s~~------------~~~~~~ 70 (533)
T KOG0556|consen 6 ALGEDGK-LSKKALKKLAKKLEKLRKKQEREETAA--KAREAEAEDYAKERYGDLSLIQSQS------------KEGREL 70 (533)
T ss_pred hcccccc-ccHHHHHHHHHHHHHHHhhhhhhhhhh--hhhhhhhhhHHhhhcCccccccccc------------ccccce
Confidence 3344555 999999999999999999988774222 2233566788999999999999998 678899
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCC-CcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPD-SVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~-~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
+++.+|+.+..|+.||||||||+.|.+| |+||++|||++.+|||++..+.. .+|++|+||+++|+.||||+|.|+|++
T Consensus 71 ~~v~dl~~~~~~~~V~vRgrVhtsr~~G-K~~FlvLRq~~~tVQ~~~~~~~~~~isk~Mvkf~~~is~ESiV~v~g~v~k 149 (533)
T KOG0556|consen 71 TDVSDLDESNDGSEVLVRGRVHTSRLKG-KLCFLVLRQQGSTVQCLVAVNEDGTISKQMVKFAGSISKESIVDVRGVVVK 149 (533)
T ss_pred eehhhhhhhcCCceEEEEEEEeeccccc-eEEEEEEeccCceEEEEEEcCCCchHHHHHHHHHhhcCcceEEEEEEEEec
Confidence 9999999999999999999999999999 99999999999999999998764 389999999999999999999999999
Q ss_pred CCCccCCCcee-EEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHH
Q 008808 172 PDVEIKGATQQ-VEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (553)
Q Consensus 172 ~~~~~~~~t~~-~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~ 249 (553)
++.++++||++ +||+|.+|+|||.+.+. |++++|++|++.+++++.+....+.++++||||+||+||||||++|+|||
T Consensus 150 ~~~~i~scT~qdvEi~v~~iyviS~a~~~LPl~veDasrse~~eE~a~~~~~~~~~Vn~dtRLdnRvlDLRtptnqAiFr 229 (533)
T KOG0556|consen 150 VKEPIKSCTVQDVEIHVRKIYVISIALPNLPLQVEDASRSEPDEEKAAEPESTLARVNLDTRLDNRVLDLRTPTNQAIFR 229 (533)
T ss_pred CCCcccccccceeEEEEEEEEEEecccccCCeeehhhcccccchhhhcCCccccceecccccccceeeecccccchheee
Confidence 99999999977 99999999999999999 99999999988777666555567889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCC
Q 008808 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDS 329 (553)
Q Consensus 250 ~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~ 329 (553)
+++.|+.+||+||..+||+|||||+|+++++||||++|.|.||+.++||+|||||||||+|||+|+||||||||||||+|
T Consensus 230 iq~gvc~~FRe~L~~kgF~EIhTpKli~asSEGGanvF~v~Yfk~~A~LAQSPQLyKQMaI~gdf~rVyeIGpVfRAEdS 309 (533)
T KOG0556|consen 230 IQAGVCFAFREYLRSKGFVEIHTPKLIGASSEGGANVFRVSYFKQKAYLAQSPQLYKQMAICGDFERVYEIGPVFRAEDS 309 (533)
T ss_pred hHHHHHHHHHHHHHhcCcceecccccccccCCCCceeEEEEeccCcchhhcChHHHHHHHHhcchhheeeecceeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHHHHHH
Q 008808 330 YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKD 409 (553)
Q Consensus 330 ~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~~ 409 (553)
|||||++||+.||+||+|..||+|+|+++.+|+.+||+.|.++|+++|+.++.+||+++++|.++..+++|.|+++||++
T Consensus 310 nthRhltEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~l~ery~~Eie~Vr~qyp~e~fkf~~~~lrl~~~e~v~mLre 389 (533)
T KOG0556|consen 310 NTHRHLTEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKGLRERYAKEIETVRKQYPFEPFKFLEPPLRLTFKEGVAMLRE 389 (533)
T ss_pred chhhhhHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCceEeehHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHH
Q 008808 410 AGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEF 489 (553)
Q Consensus 410 ~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~ 489 (553)
+|+++.+.+||+|+.|+.||++|+++|++||||+++||.++|||||||+++||.+++|||+||+|.||.||+||+|||+.
T Consensus 390 aGvE~g~~dDlsTe~Ek~LG~lV~eky~tdfyildkyP~avRPFYTmpd~~~p~ySnSyD~fmRGeEIlSGAQRIhdpe~ 469 (533)
T KOG0556|consen 390 AGVEMGDEDDLSTESEKKLGQLVREKYDTDFYILDKYPLAVRPFYTMPDPENPRYSNSYDFFMRGEEILSGAQRIHDPEL 469 (533)
T ss_pred cCcccCCccccCChhHHHHHHHHHHHhCCcEEEEccCccccccccccCCCCCCCcccchhheechhhhhccccccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 490 LAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 490 l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
|.+|+++||+|+..+..||++|+||+|||||+|||+||++|+++|++|||.+++|||||+||+|
T Consensus 470 L~era~~hGid~~~i~~YidsFryG~PPHaGgGIGLERvvmlyl~L~nIR~~SlFPRDPkRL~P 533 (533)
T KOG0556|consen 470 LVERAKEHGIDPSKISTYIDSFRYGAPPHAGGGIGLERVVMLYLGLNNIRKTSLFPRDPKRLTP 533 (533)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhccCCCCCCCCcccHHHHHHHHhcCCcchhhccCCCCccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998
|
|
| >PLN02850 aspartate-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-131 Score=1075.81 Aligned_cols=528 Identities=75% Similarity=1.167 Sum_probs=487.6
Q ss_pred cccccCCcccccChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCcCCcCccchhhhhccCCCCCCcccccccC
Q 008808 10 VQEEVDSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVNG 89 (553)
Q Consensus 10 ~~~~~~~~~~~~sk~~~kk~~k~~~k~~k~a~~~~~~~~~~~~~~~~~d~~~~~yg~~~~~~~~~~~~pyphkf~~~~~~ 89 (553)
.++..|+.++.+|||++||++|+++|++|++++++++++ ..+++|...++||++|+.|+++. .+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~yg~~~~~~~~~~-----------~~~ 66 (530)
T PLN02850 2 SQEAVEESGEKISKKAAKKAAAKAEKLRREATAKAAAAS----LEDEDDPLASNYGDVPLEELQSK-----------VTG 66 (530)
T ss_pred CcccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhh----hccccchhhccCCcccccccccc-----------cCC
Confidence 355677788889999999999999999887765432211 12256788999999999888741 345
Q ss_pred cceEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEE
Q 008808 90 REWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVV 169 (553)
Q Consensus 90 ~~~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v 169 (553)
.+|++|++|+..+.|++|+|+||||++|.+| |++|++|||++++||||+..+...++++|++|+..|+.||+|+|+|+|
T Consensus 67 ~~~~~i~~l~~~~~g~~V~v~Grv~~~R~~g-k~~Fl~Lrd~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v 145 (530)
T PLN02850 67 REWTDVSDLGEELAGSEVLIRGRVHTIRGKG-KSAFLVLRQSGFTVQCVVFVSEVTVSKGMVKYAKQLSRESVVDVEGVV 145 (530)
T ss_pred ceEeEhhhcchhhCCCEEEEEEEEEEEccCC-CeEEEEEEeCCcCEEEEEECCccccCHHHHHHHhCCCCCCEEEEEEEE
Confidence 6899999999999999999999999999999 799999999999999999877545789999999999999999999999
Q ss_pred ecCCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHH
Q 008808 170 SVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIF 248 (553)
Q Consensus 170 ~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if 248 (553)
+.++.+++++|+++||++++|+|||+|.++ |++++|+++++.+.++....+..++++++++||+|||||||++.+++||
T Consensus 146 ~~~~~~~~~~t~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR~~~~qaif 225 (530)
T PLN02850 146 SVPKKPVKGTTQQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLRTPANQAIF 225 (530)
T ss_pred EccCcCCCCCCccEEEEEeEEEEEeCCCCCCCCChhhcccccccccccccccccccccChhhhhcchhhhhcCHHHHHHH
Confidence 998888889999999999999999999888 9999999886654433222344567889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCC
Q 008808 249 RIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAED 328 (553)
Q Consensus 249 ~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~ 328 (553)
++||.|++.||+||.++||+||+||+|+++++|||+++|.|+|||.++||+|||||||||+++||++||||||||||||+
T Consensus 226 rirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE~ 305 (530)
T PLN02850 226 RIQSQVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRLDYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAED 305 (530)
T ss_pred HHHHHHHHHHHHHHHHCCcEEEeCCccccCCCccccceeeeccCCcceecCCCHHHHHHHHHHhcCCceEEEecccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHHHHH
Q 008808 329 SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLK 408 (553)
Q Consensus 329 ~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~ 408 (553)
++|+|||||||||||||+|.++|+|+|+++|+|+.+++..+.++|..+++.+..++|+..+++.+++++++|.||+++|+
T Consensus 306 s~t~RHl~EFt~Le~Em~~~~~y~evm~~~E~ll~~i~~~l~~~~~~el~~i~~~~~~~~~~~~~~~~rit~~ea~~~L~ 385 (530)
T PLN02850 306 SFTHRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLNERCKKELEAIREQYPFEPLKYLPKTLRLTFAEGIQMLK 385 (530)
T ss_pred CCCCccchhhccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhcccCCcchhhhcCCcccCCHHHHHHHHH
Confidence 99999999999999999999899999999999999999999999988998888888998888888999999999999999
Q ss_pred HcCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHH
Q 008808 409 DAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPE 488 (553)
Q Consensus 409 ~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~ 488 (553)
+.|++.++..|++++.|+.||++|+++|++|+|||+|||.+++|||+|++++||++++|||||++|+||+|||+|+|||+
T Consensus 386 ~~g~~~~~~~dl~~~~E~~Lg~~v~~~~~~~~~ii~~yP~~~~pfY~~~~~~d~~~~~~fDl~i~G~EI~~G~qr~~d~~ 465 (530)
T PLN02850 386 EAGVEVDPLGDLNTESERKLGQLVKEKYGTDFYILHRYPLAVRPFYTMPCPDDPKYSNSFDVFIRGEEIISGAQRVHDPE 465 (530)
T ss_pred HcCCCCCCCCCcchHHHHHHHHHHHHhcCCCeEEEECCccccCchhccccCCCCCeEEEEEEEeCCEEEeccceecCCHH
Confidence 99998888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 489 FLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 489 ~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
+|++|++++|+|+..++|||+|++||+|||||||||||||+|++||++|||+|++|||||+||+|
T Consensus 466 ~l~~r~~~~g~d~~~~~~Yl~a~~~G~pPhgG~GiGlERLvM~l~g~~nIr~v~~FPR~p~rl~p 530 (530)
T PLN02850 466 LLEKRAEECGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRLAP 530 (530)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHcCCCCCceEEEcHHHHHHHHcCCCchheEeecCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998
|
|
| >PTZ00401 aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-126 Score=1035.12 Aligned_cols=509 Identities=47% Similarity=0.788 Sum_probs=460.3
Q ss_pred cccccChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCcCCcCccchhhhhccCCCCCCcccccccCcceEEec
Q 008808 17 SSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVG 96 (553)
Q Consensus 17 ~~~~~sk~~~kk~~k~~~k~~k~a~~~~~~~~~~~~~~~~~d~~~~~yg~~~~~~~~~~~~pyphkf~~~~~~~~~~~i~ 96 (553)
..+..+|+++||++|+++|++++++++++++.++ .++|...++||.+|+.|+++ .+.++|++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~------------~~~~~~~~i~ 69 (550)
T PTZ00401 6 ADAGAPAVEKKQSDKEARKAARLAEEKARAAEKA----ALVEKYKDVFGAAPMVQSTT------------YKSRTFIPVA 69 (550)
T ss_pred cccCcchhhHHHHHHHHHhHHHHHHHHHHHHhhh----hccchhhccCCccccccccc------------cCCCceEEHH
Confidence 3456789999999999999999888764332221 14688889999999999887 6678899999
Q ss_pred cccCCC-CCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCc
Q 008808 97 ALNGSL-KDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE 175 (553)
Q Consensus 97 ~l~~~~-~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~ 175 (553)
+|+..+ .|++|+|+|||+++|.+| |++|++|||++++||||++.+. .++++|++|+..|+.||+|+|+|+|+.+..+
T Consensus 70 ~l~~~~~~g~~V~v~Grv~~~R~~G-k~~Fl~LRd~~~~iQ~v~~~~~-~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~ 147 (550)
T PTZ00401 70 VLSKPELVDKTVLIRARVSTTRKKG-KMAFMVLRDGSDSVQAMAAVEG-DVPKEMIDFIGQIPTESIVDVEATVCKVEQP 147 (550)
T ss_pred HCCccccCCCEEEEEEEEEEEecCC-CeEEEEEEeCCcCEEEEEECCC-ccCHHHHHHHhcCCCCCEEEEEEEEEecCcc
Confidence 998777 899999999999999999 8999999999999999998653 3688999999999999999999999998777
Q ss_pred cCCCce-eEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHHHHH
Q 008808 176 IKGATQ-QVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQ 253 (553)
Q Consensus 176 ~~~~t~-~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~Rs~ 253 (553)
+++++. ++||++++|+|||+|.++ |++++|+++++. .....++++|||+|||||||++.++++|++||+
T Consensus 148 ~~~~~~~~~El~v~~i~vls~a~~~lP~~~~d~~~~~~---------~~~~~~~~dtrl~~R~LdlR~~~~~~i~r~rs~ 218 (550)
T PTZ00401 148 ITSTSHSDIELKVKKIHTVTESLRTLPFTLEDASRKES---------DEGAKVNFDTRLNSRWMDLRTPASGAIFRLQSR 218 (550)
T ss_pred CCCCCCccEEEEeeEEEEEeCCCCCCCCCccccccccc---------ccccccChhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 666554 599999999999999888 999999876433 123457899999999999999999999999999
Q ss_pred HHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCCCCCC
Q 008808 254 VGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHR 333 (553)
Q Consensus 254 i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~t~r 333 (553)
|+++||+||.++||+|||||+|+++++|||+++|.|+|||.++||+|||||||||+++||++||||||||||||+++|+|
T Consensus 219 i~~~~R~fl~~~gFiEV~TP~L~~~~~egga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FRaE~s~T~R 298 (550)
T PTZ00401 219 VCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVFKLEYFNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHR 298 (550)
T ss_pred HHHHHHHHHHHCCCEEEeCCccccCCCCccccccccccCCCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEeCCCCCCCC
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred CcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCC---------------------
Q 008808 334 HLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYK--------------------- 392 (553)
Q Consensus 334 Hl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~--------------------- 392 (553)
||||||||||||+|.++|+|+|+++|+|+.+++..+.++ ..+++.+..++|++++.|.
T Consensus 299 Hl~EFt~Le~E~~~~~~y~evm~~~e~l~~~i~~~l~~~-~~ei~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 377 (550)
T PTZ00401 299 HLTEFVGLDVEMRINEHYYEVLDLAESLFNYIFERLATH-TKELKAVCQQYPFEPLVWKLTPERMKELGVGVISEGVEPT 377 (550)
T ss_pred CccchhhhhhhhHhcCCHHHHHHHHHHHHHHHHHHHHcc-chhhhhhccccccccccccccHHHHHhcCCCcccccccch
Confidence 999999999999998899999999999999999999876 4466666666666554221
Q ss_pred -----------CCCcccCHHHHHHHHHHcC-CCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCC
Q 008808 393 -----------PKTLRLTFEEGVQMLKDAG-VEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHD 460 (553)
Q Consensus 393 -----------~~~~~i~~~ea~~ll~~~g-~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~ 460 (553)
.+++||+|.||++||++.| .++++.+|+++++|++|+++|+++|++|+||+++||.+++|||+|++++
T Consensus 378 ~~l~~~~~~~~~~~~rl~y~eai~lL~~~~~~~~~~~~dl~~~~E~~L~~~v~~~~~~~~fI~d~yP~~~rpFY~~~~~~ 457 (550)
T PTZ00401 378 DKYQARVHNMDSRMLRINYMHCIELLNTVLEEKMAPTDDINTTNEKLLGKLVKERYGTDFFISDRFPSSARPFYTMECKD 457 (550)
T ss_pred HHHHHHHHhcCCCcccccHHHHHHHHHHhcccCCCcccccCchHHHHHHHHHHHhcCCCEEEECCCChhhCchhcCcCCC
Confidence 1388999999999999986 4566778999999999999999999999877667999999999999999
Q ss_pred CCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccc
Q 008808 461 NSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRK 540 (553)
Q Consensus 461 ~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrd 540 (553)
||++++|||||++|+||+|||+|+|||++|++|++++|+|+..++|||+|++||+|||||||||||||+|++||+.|||+
T Consensus 458 dp~~s~~fDlf~~G~EI~sG~qR~~d~~~l~~r~~~~G~d~~~~~~Yl~a~~~G~PPhgG~GiGlERLvM~~lg~~nIR~ 537 (550)
T PTZ00401 458 DERFTNSYDMFIRGEEISSGAQRIHDPDLLLARAKMLNVDLTPIKEYVDSFRLGAWPHGGFGVGLERVVMLYLGLSNVRL 537 (550)
T ss_pred CCCEEEEEEEEeCCEEEccchhhcCCHHHHHHHHHHcCCCchhhHHHHHHHHcCCCCCceEEEhHHHHHHHHhCCCcHhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCC
Q 008808 541 TSLYPRDPLRIAP 553 (553)
Q Consensus 541 v~~FPr~p~rl~p 553 (553)
|++|||||+||+|
T Consensus 538 v~lFPRdp~rl~p 550 (550)
T PTZ00401 538 ASLFPRDPQRTTP 550 (550)
T ss_pred eecCCCCCCCCCC
Confidence 9999999999998
|
|
| >KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-115 Score=893.98 Aligned_cols=498 Identities=23% Similarity=0.379 Sum_probs=425.6
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHHHH------HhhhccccccCCCcCCcCccchhhhhc----cCCCCCCcccccc
Q 008808 18 SQSISKKAAKKEAAKKAKEERRKEAEAAAS------AASALSIEEEGPLANNYGDVPLQELQS----VNDPQTGKWSEAV 87 (553)
Q Consensus 18 ~~~~sk~~~kk~~k~~~k~~k~a~~~~~~~------~~~~~~~~~~d~~~~~yg~~~~~~~~~----~~~pyphkf~~~~ 87 (553)
..++||+++||+.+..+|+..++++++... .+......+++.++++|.++|.+.+++ +.|||||||++++
T Consensus 5 s~~~sk~~lkrr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~qy~~~R~r~i~~l~~s~~~Pyphkf~vs~ 84 (560)
T KOG1885|consen 5 SEMLSKNELKRRSLAKQKALEKAKKASSKAAAPSVAAAKSVSKSEETSDPEQYFKIRSRAIEELRASGLNPYPHKFHVSI 84 (560)
T ss_pred hhhhhHHHHHHhHHHhhHHHHHHHhhhhccCCCccccccccccccccCCHHHHHHHHHHHHHHHhhcCCCCCcchhhccc
Confidence 378899999999999888777666553211 112234556788999999999999876 6899999999999
Q ss_pred cCcce-EEeccc--cCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEE
Q 008808 88 NGREW-TVVGAL--NGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 164 (553)
Q Consensus 88 ~~~~~-~~i~~l--~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~ 164 (553)
+..+| .++..+ .++..+..|+|+||||++|.+|+||+|++|++++.+||+|++++....+.++.+..+.|++||||+
T Consensus 85 si~~fieky~~l~~ge~~~n~~~svaGRI~s~R~sGsKL~Fydl~~~g~klQvm~~~~~~~~~~~F~~~~~~lkrGDiig 164 (560)
T KOG1885|consen 85 SIPDFIEKYLHLATGEHLDNEIVSVAGRIHSKRESGSKLVFYDLHGDGVKLQVMANAKKITSEEDFEQLHKFLKRGDIIG 164 (560)
T ss_pred cHHHHHHHhcCcccccccccceeeeeeeEeeeeccCCceEEEEEecCCeEEEEEEehhhcCCHHHHHHHHhhhhccCEEe
Confidence 99765 233333 346677889999999999999999999999999999999999986544566777888999999999
Q ss_pred EEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeecc-H
Q 008808 165 VIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRT-L 242 (553)
Q Consensus 165 V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~-~ 242 (553)
|.|.++++. +++++|.++++.+||+|++| |- .++++.|.|+|+++|||||.. +
T Consensus 165 ~~G~pgrt~------~gELSi~~~~~~lLspcLh~lP~-------------------~~~gLkD~EtRyrqRylDlilN~ 219 (560)
T KOG1885|consen 165 VSGYPGRTK------SGELSIIPNEIILLSPCLHMLPH-------------------EHFGLKDKETRYRKRYLDLILNP 219 (560)
T ss_pred eecCCCcCC------CceEEEeecchheecchhccCCh-------------------hhcCCCcHHHHHHHHHHHHHcCH
Confidence 999988765 45899999999999999999 83 356788999999999999987 7
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee--cCCCCceecccChhhHhhhcccCCCceeEEE
Q 008808 243 ANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQMSICGDFGRVFET 320 (553)
Q Consensus 243 ~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~SPql~lk~li~~g~~rVfeI 320 (553)
.++..|++|++||++||.||+++||+||+||+|+..+.+.-|.||.+ |.+++++|||+|||||+|||++||++|||||
T Consensus 220 ~~r~~f~~RakII~~iRkfld~rgFlEVETPmmn~iaGGA~AkPFIT~hndldm~LylRiAPEL~lK~LvVGGldrVYEI 299 (560)
T KOG1885|consen 220 EVRDRFRIRAKIISYIRKFLDSRGFLEVETPMMNMIAGGATAKPFITHHNDLDMDLYLRIAPELYLKMLVVGGLDRVYEI 299 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCceEecchhhccccCccccCceeecccccCcceeeeechHHHHHHHHhccHHHHHHH
Confidence 88999999999999999999999999999999986543334569987 4588999999999999999999999999999
Q ss_pred eceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCH
Q 008808 321 GPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTF 400 (553)
Q Consensus 321 g~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~ 400 (553)
|++||||++ +.+||||||+|||||||+ ||+|+|+++|+|++.++..+.+.|+..++..+...+.-.++|.+||.|+++
T Consensus 300 Gr~FRNEGI-DlTHNPEFTTcEfY~AYa-dy~dlm~~TE~l~s~mv~~i~G~~~i~y~p~~~~~~~~eldf~~pfrri~m 377 (560)
T KOG1885|consen 300 GRQFRNEGI-DLTHNPEFTTCEFYMAYA-DYEDLMDMTEELLSGMVKNITGSYKITYHPNGPEEPELELDFTRPFRRIEM 377 (560)
T ss_pred HHHhhhcCc-ccccCCCcchHHHHHHHh-hHHHHHHHHHHHHHHHHHhhcCceeEeecCCCCCCCceeeeccCCeeeeeH
Confidence 999999998 899999999999999998 699999999999999999999999887776655555556899999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCcH--------------------------HHHHHhHHHHHHhCCccEEEeccCCcCCCCC
Q 008808 401 EEGVQMLKDAGVEIDPLGDLNTE--------------------------SERKLGQLVLEKYGTEFYILHRYPLAVRPFY 454 (553)
Q Consensus 401 ~ea~~ll~~~g~~~~~~~dl~~~--------------------------~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy 454 (553)
-+.++ ++.|+++++++++.++ ..++.|..++.++-.|.||+ ++|..++|+
T Consensus 378 i~~L~--k~lgi~l~~~~~l~~~e~~~~L~~~~~~~~v~~p~p~t~arlLdKLvg~flE~~cvnPTFi~-~hP~imSPL- 453 (560)
T KOG1885|consen 378 IEELE--KELGIKLPPGSTLHTEETRELLKSLCVDEAVECPPPRTTARLLDKLVGEFLEPTCVNPTFII-DHPQIMSPL- 453 (560)
T ss_pred HHHHH--HHhCCCCCCccccCchhhHHHHHHHHHhcccCCCCcccHHHHHHHHHhHhhccccCCCeeEc-CCchhcCcc-
Confidence 88775 5667766654444332 23444444556677777765 689999999
Q ss_pred CcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH------cCCChhc--HHHHHHHhhcCCCCcceeeecHH
Q 008808 455 TMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA------CGIDVKT--ISTYIDSFRYGAPPHGGFGVGLE 526 (553)
Q Consensus 455 ~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~------~g~~~~~--~~~yl~a~~~G~pP~~G~GiGid 526 (553)
++++++++++|+|||||++|.||||+|+|+|||..|++||.+ .|.|++. +++||+||+|||||+||||||||
T Consensus 454 AK~hrs~~glteRFElFi~~kEicNAYtElNdP~~Qr~rFe~Q~~~k~~GDDEa~~~De~Fc~ALEYGlPPtgGwGmGID 533 (560)
T KOG1885|consen 454 AKYHRSKAGLTERFELFIAGKEICNAYTELNDPVDQRQRFEQQARDKDAGDDEAQMVDEDFCTALEYGLPPTGGWGMGID 533 (560)
T ss_pred ccccccccchhhHHHHhhhhHHHhhhhhhhcCHHHHHHHHHHHHHHhhcCCcccccccHHHHHHHHcCCCCCCccccchh
Confidence 789999999999999999999999999999999999999963 5777653 69999999999999999999999
Q ss_pred HHHHHHcCCCCccccccccC
Q 008808 527 RVVMLFCGLNNIRKTSLYPR 546 (553)
Q Consensus 527 RLvm~l~g~~nIrdv~~FPr 546 (553)
||+|+||+..|||||++||-
T Consensus 534 RL~MllTds~~I~EVL~Fp~ 553 (560)
T KOG1885|consen 534 RLVMLLTDSNNIREVLLFPA 553 (560)
T ss_pred hhhhhhcCCcchhheeeccc
Confidence 99999999999999999995
|
|
| >COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-108 Score=859.62 Aligned_cols=426 Identities=38% Similarity=0.636 Sum_probs=395.0
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
+.+.++.....|+.|+|+|||+++|.+| +++|+.|||+++.||||+.++. ..+++++ ++.|+.||+|.|+|+|+..
T Consensus 5 ~~i~di~~~~~~~~V~v~GWV~~~R~~g-~i~Fi~lrDgsg~iQ~v~~~~~--~~~~~~~-~~~L~~es~v~V~G~v~~~ 80 (435)
T COG0017 5 TYIKDIKPHVGGQEVTVRGWVHNKRDLG-KIIFLVLRDGSGFIQAVVPKNK--VYEELFK-AKKLTLESSVVVTGIVKAS 80 (435)
T ss_pred eeHHhhhccCCCcEEEEEEEeeeecccC-CeEEEEEEcCCcEEEEEEECCC--CcHHHhh-hhcCCCccEEEEEEEEEcC
Confidence 5566676666669999999999999999 8999999999999999999752 3567777 8999999999999999988
Q ss_pred CCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHHH
Q 008808 173 DVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQ 251 (553)
Q Consensus 173 ~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~R 251 (553)
++ +.|.+||++++|.|++.+..+ |++.+.. ++.|+|+++||||||++..+++|++|
T Consensus 81 ~~----a~~g~El~v~~i~Vl~~a~~~~Pi~~~~~-------------------~~~e~lld~rhL~lR~~~~~Av~kir 137 (435)
T COG0017 81 PK----APQGFELQVEKIEVLGEADPPYPIDKKEH-------------------SELETLLDNRHLDLRTPKIQAVFKIR 137 (435)
T ss_pred CC----CCCCEEEEEEEEEEeeccCCCCCcCcccc-------------------cCHHHHHhchheeccccchHHHHhHH
Confidence 74 456799999999999999666 8765432 26899999999999999999999999
Q ss_pred HHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCCCC
Q 008808 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYT 331 (553)
Q Consensus 252 s~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~t 331 (553)
|.|++++|+||.++||+||+||+|+++++|||+++|.++||+.++||+||||||||+++++ ++|||+|||+||||+++|
T Consensus 138 s~i~~a~~eff~~~gF~eV~tP~i~~~~~EGg~elF~v~yf~~~a~LtqS~QLyke~~~~a-l~rVf~igP~FRAE~s~T 216 (435)
T COG0017 138 SSILRAIREFFYENGFTEVHTPIITASATEGGGELFKVDYFDKEAYLTQSPQLYKEALAAA-LERVFTIGPTFRAEKSNT 216 (435)
T ss_pred HHHHHHHHHHHHhCCcEEecCceEeccCCCCCceeEEEeecCcceEEecCHHHHHHHHHHH-hCceEEecCceecCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999998777 999999999999999999
Q ss_pred CCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccC--CCCCcccCHHHHHHHHHH
Q 008808 332 HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKY--KPKTLRLTFEEGVQMLKD 409 (553)
Q Consensus 332 ~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~--~~~~~~i~~~ea~~ll~~ 409 (553)
.|||.||||+|.||+|++ ++|+|+++|+|++++++.+.++|+.+++.++. ....++- ..||+||+|.||+++|++
T Consensus 217 ~RHL~EF~~ld~Emaf~~-~~d~m~l~E~~i~~i~~~v~e~~~~el~~l~~--~~~~l~~~~~~pf~ritY~eAieiL~~ 293 (435)
T COG0017 217 RRHLSEFWMLDPEMAFAD-LNDVMDLAEELIKYLFKKVLEECADELEFLGR--DNSELKRPESAPFPRITYKEAIEILEE 293 (435)
T ss_pred cchhhhHheecceeccCc-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc--cchhhcccccCCccEEEHHHHHHHHHh
Confidence 999999999999999985 99999999999999999999999999988764 2223333 357999999999999999
Q ss_pred cCCC-CCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCC-EEEeeceeccCCH
Q 008808 410 AGVE-IDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRG-EEIISGAQRIHIP 487 (553)
Q Consensus 410 ~g~~-~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G-~Ei~~G~~r~~d~ 487 (553)
.|.+ +.|++|+++++|+.|+ ++++.|++||+|||..++|||+|+++++|+++.+|||+++| +||+||+||+||+
T Consensus 294 ~~~e~~~~GdDl~~e~Er~l~----e~~~~~~vfv~~yP~~~kpFYm~~~~d~p~~~~~~Dll~p~~gEIigGsqRe~~~ 369 (435)
T COG0017 294 KGFEKVEWGDDLGTEHERYLG----EEYFKPPVFVTNYPKEIKPFYMRPDPDNPGTVASFDLLAPGGGEIIGGSQREHDY 369 (435)
T ss_pred cCCcccCCCCccCCHHHHHHH----HHhCCCcEEEEeCcccccccccccCCCCCCeEEEEeeecCCceeeecceeccccH
Confidence 9998 8999999999999998 67888889999999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 488 EFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 488 ~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
+.|.+|++++|+|++.++|||++++||+|||||||||+|||+|++||++|||||++|||+|+|+.|
T Consensus 370 d~L~~ri~~~gl~~e~~~wYld~~kyG~~PHaGfGlG~ERlv~~i~gl~nIRea~pFPR~~~r~~p 435 (435)
T COG0017 370 DLLVERIKEKGLDPESYEWYLDLRKYGMPPHAGFGLGLERLVMYILGLDNIREAIPFPRDPGRLYP 435 (435)
T ss_pred HHHHHHHHHcCCChHHhHHHHHHHHcCCCCCcccccCHHHHHHHHhCCCcceeccccCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999988
|
|
| >PLN02502 lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-108 Score=897.54 Aligned_cols=497 Identities=23% Similarity=0.360 Sum_probs=408.0
Q ss_pred CCcccccChHHHHHHHHHHHHHHHHHHHHHHHHH----h-h-----hccccccCCCcCCcCccchhhhhc----cCCCCC
Q 008808 15 DSSSQSISKKAAKKEAAKKAKEERRKEAEAAASA----A-S-----ALSIEEEGPLANNYGDVPLQELQS----VNDPQT 80 (553)
Q Consensus 15 ~~~~~~~sk~~~kk~~k~~~k~~k~a~~~~~~~~----~-~-----~~~~~~~d~~~~~yg~~~~~~~~~----~~~pyp 80 (553)
+++++++||+++||++|+++++++++++++++++ + + ...++.++.++++|..+|...+++ |.||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~g~~pyp 81 (553)
T PLN02502 2 ESNGEPLSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETMDPTQYRANRLKKVEALRAKGVEPYP 81 (553)
T ss_pred CCCcccccHHHHHHHHhhhhhhHHHhhhHhhcccccccccCccccccccccccccCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 4567899999999999999998888876643211 0 0 011122245667888888877765 789999
Q ss_pred CcccccccCcce-EEeccc--cCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcc-hHHHHHHhc
Q 008808 81 GKWSEAVNGREW-TVVGAL--NGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVS-KEMVRFVRS 156 (553)
Q Consensus 81 hkf~~~~~~~~~-~~i~~l--~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~-~~~~~~~~~ 156 (553)
|+|.++++..++ .++.++ ++...|++|+|+|||+++|.+| |++|++|||+++.||||++.+....+ +.+.++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~G-k~~F~~LrD~~g~iQv~~~~~~~~~~~~~~~~~~~~ 160 (553)
T PLN02502 82 YKFDVTHTAPELQEKYGSLENGEELEDVSVSVAGRIMAKRAFG-KLAFYDLRDDGGKIQLYADKKRLDLDEEEFEKLHSL 160 (553)
T ss_pred CCCCCCccHHHHHHHhhccccccccCCCEEEEEEEEEEEecCC-CeEEEEEecCCccEEEEEECccccchhHHHHHHHhC
Confidence 999999887654 334433 3456799999999999999999 99999999999999999987632111 235566677
Q ss_pred CCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCcccccccc
Q 008808 157 LSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNR 235 (553)
Q Consensus 157 l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R 235 (553)
|+.||+|+|+|++++++ ++++||.+++|.+||+|+.+ |.... +.++.++|+++|
T Consensus 161 l~~gdiV~V~G~~~~t~------~gelel~~~~i~vLs~~l~plP~k~~-------------------~~~d~e~r~r~R 215 (553)
T PLN02502 161 VDRGDIVGVTGTPGKTK------KGELSIFPTSFEVLTKCLLMLPDKYH-------------------GLTDQETRYRQR 215 (553)
T ss_pred CCCCcEEEEEEEEEecC------CCCEEEEEeEEEEEeccCCCCCcccc-------------------cccchhhhccch
Confidence 99999999999998764 46899999999999999888 86432 347899999999
Q ss_pred ceeec-cHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee--cCCCCceecccChhhHhhhcccC
Q 008808 236 VIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQMSICG 312 (553)
Q Consensus 236 ~LdLr-~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~SPql~lk~li~~ 312 (553)
||||+ ++.++++|++||+|+++||+||+++||+||+||+|++.+.+++|.+|.+ +||+.++||+||||||||+|++|
T Consensus 216 yLdl~~n~~~~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~gGA~a~pF~t~~n~~~~~~yL~~Spel~lK~L~v~ 295 (553)
T PLN02502 216 YLDLIANPEVRDIFRTRAKIISYIRRFLDDRGFLEVETPMLNMIAGGAAARPFVTHHNDLNMDLYLRIATELHLKRLVVG 295 (553)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeeeccCCCccccceeeecccCCcceeeecCHHHHHHHHHHh
Confidence 99996 6999999999999999999999999999999999987553334568987 78999999999999999999999
Q ss_pred CCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCC
Q 008808 313 DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYK 392 (553)
Q Consensus 313 g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~ 392 (553)
|++||||||||||||+++ .|||||||||||||+|+ ||+|+|+++|+||++++..+.+.++..+ ....++|.
T Consensus 296 g~~rVfeIg~~FRnE~~~-~rH~pEFtmlE~y~a~~-d~~dlm~~~E~li~~i~~~v~~~~~~~~-------~~~~i~~~ 366 (553)
T PLN02502 296 GFERVYEIGRQFRNEGIS-TRHNPEFTTCEFYQAYA-DYNDMMELTEEMVSGMVKELTGSYKIKY-------HGIEIDFT 366 (553)
T ss_pred ccCCEEEEcCeeeCCCCC-CccccceeehhhhhhcC-CHHHHHHHHHHHHHHHHHHHhccccccc-------CCccccCC
Confidence 999999999999999985 59999999999999997 7999999999999999999987765432 33456777
Q ss_pred CCCcccCHHHHHHHH----------------------HHcCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcC
Q 008808 393 PKTLRLTFEEGVQML----------------------KDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAV 450 (553)
Q Consensus 393 ~~~~~i~~~ea~~ll----------------------~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~ 450 (553)
.||.|++|.|+++.+ ++.|+++++..++......+++.+|++++..|+| |+|||..+
T Consensus 367 ~p~~rit~~e~l~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve~~l~~PtF-V~dyP~~~ 445 (553)
T PLN02502 367 PPFRRISMISLVEEATGIDFPADLKSDEANAYLIAACEKFDVKCPPPQTTGRLLNELFEEFLEETLVQPTF-VLDHPVEM 445 (553)
T ss_pred CCceeccHHHHHHHHhCCCCCcCCCHHHHHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHHHHhhcCCCEE-EECCcccc
Confidence 788898888876522 1223333333334445566777888888877755 56799999
Q ss_pred CCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH------cCCCh--hcHHHHHHHhhcCCCCcceee
Q 008808 451 RPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA------CGIDV--KTISTYIDSFRYGAPPHGGFG 522 (553)
Q Consensus 451 ~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~------~g~~~--~~~~~yl~a~~~G~pP~~G~G 522 (553)
+|| ++++++||++++|||||++|+||||||+|+|||.+|++||.+ .|.+. ..+++||+||+||||||||||
T Consensus 446 spl-ak~~~~~p~~~erFELfi~G~Eiangy~ELnDp~~Qr~rf~~q~~~~~~~~~~~~~~De~fl~aleyGmPP~gG~G 524 (553)
T PLN02502 446 SPL-AKPHRSKPGLTERFELFINGRELANAFSELTDPVDQRERFEEQVKQHNAGDDEAMALDEDFCTALEYGLPPTGGWG 524 (553)
T ss_pred Ccc-cccCCCCCCeEEEEEEEeCCeEEccchhhccCHHHHHHHHHHHHHHhhcCCccccccHHHHHHHHHcCCCCCceEE
Confidence 999 679999999999999999999999999999999999998863 23333 235889999999999999999
Q ss_pred ecHHHHHHHHcCCCCccccccccCCC
Q 008808 523 VGLERVVMLFCGLNNIRKTSLYPRDP 548 (553)
Q Consensus 523 iGidRLvm~l~g~~nIrdv~~FPr~p 548 (553)
||||||+|+|||++|||||++||+..
T Consensus 525 iGiDRLvMlltg~~sIrdVi~FP~~k 550 (553)
T PLN02502 525 LGIDRLVMLLTDSASIRDVIAFPAMK 550 (553)
T ss_pred ehHHHHHHHHcCCcchheeecCCcCC
Confidence 99999999999999999999999754
|
|
| >PRK05159 aspC aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-108 Score=879.41 Aligned_cols=433 Identities=41% Similarity=0.721 Sum_probs=401.0
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
.+.+++|+...+|++|+|+|||+++|.+| |++|++|||+++.||||++.+. . ++++++++.|+.||+|.|+|+|+.
T Consensus 4 ~~~~~~l~~~~~g~~V~i~GrV~~~R~~g-k~~Fl~LrD~~g~iQ~v~~~~~--~-~~~~~~~~~L~~gs~V~v~G~v~~ 79 (437)
T PRK05159 4 RHLTSELTPELDGEEVTLAGWVHEIRDLG-GIAFLILRDRSGIIQVVVKKKV--D-EELFETIKKLKRESVVSVTGTVKA 79 (437)
T ss_pred eeEhhhCChhhCCCEEEEEEEeEeeecCC-CeEEEEEEcCCcEEEEEEeCCc--c-HHHHHHHhCCCCCcEEEEEEEEEc
Confidence 47888999889999999999999999999 8999999999999999998763 2 678889999999999999999998
Q ss_pred CCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHH
Q 008808 172 PDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 250 (553)
Q Consensus 172 ~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~ 250 (553)
+++ ..+++||++++|+|||+|..+ |+...+.. ..+.++|++|||||||++.++++|++
T Consensus 80 ~~~----~~~~~el~~~~i~vls~a~~~~P~~~~~~~-----------------~~~~~~~~~~r~Ldlr~~~~~~~l~~ 138 (437)
T PRK05159 80 NPK----APGGVEVIPEEIEVLNKAEEPLPLDISGKV-----------------LAELDTRLDNRFLDLRRPRVRAIFKI 138 (437)
T ss_pred CCC----CCCCEEEEEeEEEEEeCCCCCCCCCccccc-----------------cCCHHHHhhCcceecCCHHHHHHHHH
Confidence 753 345799999999999999877 87654321 24689999999999999999999999
Q ss_pred HHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCCC
Q 008808 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 330 (553)
Q Consensus 251 Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~ 330 (553)
||+|++.+|+||.++||+||+||+|++++++||++.|.++|||.++||+||||||||++++||++||||||||||||+++
T Consensus 139 Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~~~~f~~~~~~~~~~L~~Spql~~q~l~~~g~~rVf~i~~~FR~E~~~ 218 (437)
T PRK05159 139 RSEVLRAFREFLYENGFTEIFTPKIVASGTEGGAELFPIDYFEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHN 218 (437)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCcccccCCCCCcceEeEEecCCceEecCCHHHHHHHHHhcCCCcEEEEeceeeCCCCC
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHHHHHHc
Q 008808 331 THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDA 410 (553)
Q Consensus 331 t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~~~ 410 (553)
|+|||||||||||||+|.++|+++|+++|+|+.++++.+.++++.+++.++..++ ....||+++||.||++++++.
T Consensus 219 t~rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv~~i~~~~~~~~~~~i~~~~~~~~----~~~~~f~rit~~eA~~~l~~~ 294 (437)
T PRK05159 219 TSRHLNEYTSIDVEMGFIDDHEDVMDLLENLLRYMYEDVAENCEKELELLGIELP----VPETPIPRITYDEAIEILKSK 294 (437)
T ss_pred CcccchhhheeeeeeeecccHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhccCCC----cCCCCceEeEHHHHHHHHHHc
Confidence 8899999999999999985599999999999999999999888887776553322 133589999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHH
Q 008808 411 GVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFL 490 (553)
Q Consensus 411 g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l 490 (553)
|++.++..|++++.|+.|+++++++++.+++||+|||..++|||+++++++|++++|||||++|+||+|||+|+|||++|
T Consensus 295 ~~~~~~~~~~~~~~e~~l~~~~~~~~~~~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~g~Ei~~g~~r~~d~~~~ 374 (437)
T PRK05159 295 GNEISWGDDLDTEGERLLGEYVKEEYGSDFYFITDYPSEKRPFYTMPDEDDPEISKSFDLLFRGLEITSGGQRIHRYDML 374 (437)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHhhhcCCceEEEecCchhcCcceeeecCCCCCEEEEEEEEECCEEEeeCeEEcCCHHHH
Confidence 98888888899999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 491 AERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 491 ~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
++|++++|+++..++|||+|++||+|||||||||||||+|++||+.|||||++|||+|+||+|
T Consensus 375 ~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidRl~m~~~g~~~Irdv~~FPr~~~~~~p 437 (437)
T PRK05159 375 VESIKEKGLNPESFEFYLEAFKYGMPPHGGFGLGLERLTMKLLGLENIREAVLFPRDRHRLTP 437 (437)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHCCCCCCCeeeEhHHHHHHHHcCCCchhEEeeccCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999998
|
|
| >TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-107 Score=868.25 Aligned_cols=425 Identities=41% Similarity=0.700 Sum_probs=389.1
Q ss_pred eccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC
Q 008808 95 VGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV 174 (553)
Q Consensus 95 i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~ 174 (553)
+++|+..+.|++|+|+|||+++|.+| |++|++|||+++.||||++.+. +++++++++..|+.||+|.|+|+|+.++.
T Consensus 3 ~~~l~~~~~g~~v~i~G~v~~~R~~g-~~~Fi~lrd~~g~iQ~v~~~~~--~~~~~~~~~~~l~~~s~v~v~G~v~~~~~ 79 (428)
T TIGR00458 3 SADIKPEMDGQEVTFMGWVHEIRDLG-GLIFVLLRDREGLIQITAPAKK--VSKNLFKWAKKLNLESVVAVRGIVKIKEK 79 (428)
T ss_pred hhhCchhhCCCEEEEEEEEEEEecCC-CcEEEEEEeCCeeEEEEEECCc--CCHHHHHHHhCCCCCcEEEEEEEEEecCC
Confidence 55677788899999999999999999 7999999999999999998753 56788999999999999999999986542
Q ss_pred ccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHHHHH
Q 008808 175 EIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQ 253 (553)
Q Consensus 175 ~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~Rs~ 253 (553)
+++++||.+++++|||+|..+ |++.++.. ..+.++|++|||||||++..+++|++||+
T Consensus 80 ----~~~~~el~~~~i~vl~~~~~~lP~~~~~~~-----------------~~~~~~r~~~R~ldlr~~~~~~~~r~Rs~ 138 (428)
T TIGR00458 80 ----APGGFEIIPTKIEVINEAKEPLPLDPTEKV-----------------PAELDTRLDYRFLDLRRPTVQAIFRIRSG 138 (428)
T ss_pred ----CCCcEEEEEeEEEEEecCCCCCCCCccccC-----------------CCCHHHHhhhhhhhhCCHHHHHHHHHHHH
Confidence 356799999999999999877 98775532 25789999999999999999999999999
Q ss_pred HHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCCCCCC
Q 008808 254 VGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHR 333 (553)
Q Consensus 254 i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~t~r 333 (553)
|++.+|+||.++||+||+||+|+++++|||++.|.++||+.++||+||||||||++++||++||||||||||||+++|+|
T Consensus 139 i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~~~~f~v~~~~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~E~~~t~r 218 (428)
T TIGR00458 139 VLESVREFLAEEGFIEVHTPKLVASATEGGTELFPITYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHR 218 (428)
T ss_pred HHHHHHHHHHHCCCEEEeCCceecCCCCCCcceeeeEecCCcEEECcCHHHHHHHHHhcccCcEEEEecccccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHHHHHHcCCC
Q 008808 334 HLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVE 413 (553)
Q Consensus 334 Hl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~~~g~~ 413 (553)
||||||||||||+|. +|+|+|+++|+||.+++..+.++++.+++..+..++ ....||+||||.||+++|++.|++
T Consensus 219 Hl~EFt~lE~e~a~~-~~~dlm~~~e~li~~i~~~~~~~~~~~~~~~~~~~~----~~~~pf~rity~eA~~~l~~~g~~ 293 (428)
T TIGR00458 219 HLNEATSIDIEMAFE-DHHDVMDILEELVVRVFEDVPERCAHQLETLEFKLE----KPEGKFVRLTYDEAIEMANAKGVE 293 (428)
T ss_pred chheeeEeeeeeccC-CHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccccc----cCCCCceEEEHHHHHHHHHHcCCC
Confidence 999999999999997 799999999999999999999888877654332211 013589999999999999999998
Q ss_pred CCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHH
Q 008808 414 IDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAER 493 (553)
Q Consensus 414 ~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r 493 (553)
.++..|++...|+.|++ +++.|+ ||+|||.+++|||+++++++|++++|||||++|+||+|||+|+||+++|++|
T Consensus 294 ~~~~~~l~~~~E~~l~~----~~~~p~-fi~d~P~~~~pfy~~~~~~~p~~~~~fdl~~~g~Ei~~g~~r~~~~~~l~~~ 368 (428)
T TIGR00458 294 IGWGEDLSTEAEKALGE----EMDGLY-FITDWPTEIRPFYTMPDEDNPEISKSFDLMYRDLEISSGAQRIHLHDLLVER 368 (428)
T ss_pred CCCccccchHHHHHHHH----HhCCCE-EEEeCchhcCcccccccCCCCCEEEEEEEEeCCeEEeeCchhcCCHHHHHHH
Confidence 88888899999999984 456665 4667999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 494 AQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 494 ~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
++++|+++..++|||+|++||+|||||||||||||+|++||+.|||||++|||+|+|+.|
T Consensus 369 ~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRL~m~l~g~~~Irdv~~FPr~~~r~~p 428 (428)
T TIGR00458 369 IKAKGLNPEGFKDYLEAFSYGMPPHAGWGLGAERFVMFLLGLKNIREAVLFPRDRKRLTP 428 (428)
T ss_pred HHHcCCChHHHHHHHHHHHCCCCCcCceeecHHHHHHHHcCCCchheEEeccCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999998
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). |
| >TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-104 Score=857.02 Aligned_cols=436 Identities=24% Similarity=0.424 Sum_probs=368.7
Q ss_pred cCCCCCCcccccccCcce-EEeccccC---CCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHH
Q 008808 75 VNDPQTGKWSEAVNGREW-TVVGALNG---SLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEM 150 (553)
Q Consensus 75 ~~~pyphkf~~~~~~~~~-~~i~~l~~---~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~ 150 (553)
|.|||||+|.++++..++ .++.+++. ...|++|+|+|||+++|.+| |++|++|||++++||+|++.+. +++++
T Consensus 20 ~~~~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~g-k~~F~~l~D~~g~iQ~~~~~~~--~~~~~ 96 (496)
T TIGR00499 20 GNNPYLNKFERTHSSQEFQEEYADLSNEELEDKNIEVSIAGRIMARRSMG-KATFITLQDESGQIQLYVNKDD--LPEDF 96 (496)
T ss_pred CCCCCCCCCCCCcCHHHHHHHhhccCccchhcCCCEEEEEEEEEEEecCC-CeEEEEEEcCCccEEEEEECCc--CcHHH
Confidence 679999999999887553 23333321 24589999999999999998 9999999999999999998763 45667
Q ss_pred HHHHh-cCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCc
Q 008808 151 VRFVR-SLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQ 228 (553)
Q Consensus 151 ~~~~~-~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 228 (553)
.++.. .|+.||+|+|+|+|.+++ +|++||++++|.+||+|..+ |.... +.++.
T Consensus 97 ~~~~~~~l~~gd~V~v~G~~~~t~------~gelel~~~~i~ilsk~~~plP~k~~-------------------~~~d~ 151 (496)
T TIGR00499 97 YEFDEYLLDLGDIIGVTGYPFKTK------TGELSVHVTELQILTKALRPLPDKFH-------------------GLTDQ 151 (496)
T ss_pred HHHHHhcCCCCCEEEEEEEEEECC------CCcEEEEeeEEEEEecCCCCCCcccc-------------------ccCCh
Confidence 77765 489999999999998764 56899999999999999887 86432 23689
Q ss_pred cccccccceeecc-HHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecC--CCCceecccChhhH
Q 008808 229 DTRLNNRVIDIRT-LANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY--KGQSACLAQSPQLH 305 (553)
Q Consensus 229 e~Rl~~R~LdLr~-~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~--~~~~~~L~~SPql~ 305 (553)
|+||++||||||+ +.++++|++||+|+++||+||.++||+||+||+|++.+++++|+||.+.| |+.++||+||||||
T Consensus 152 e~r~r~R~Ldl~~n~~~~~~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~gga~a~pF~t~~~~~~~~~yLriSpELy 231 (496)
T TIGR00499 152 ETRYRQRYLDLIVNPDSRQTFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIPGGANARPFITHHNALDMDLYLRIAPELY 231 (496)
T ss_pred hhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCCCCccceeEEeecccCCCceEEecCHHHH
Confidence 9999999999995 89999999999999999999999999999999998754333346899855 99999999999999
Q ss_pred hhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCC
Q 008808 306 KQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYP 385 (553)
Q Consensus 306 lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~ 385 (553)
||+|++||++||||||||||||++ +.|||||||||||||+|+ ||+|||+++|+||++++..+.+++... ++
T Consensus 232 lKrlivgG~~rVfeIg~~FRnE~~-~~rH~pEFTmlE~y~a~~-d~~dlm~~~E~li~~i~~~l~~~~~~~-------~~ 302 (496)
T TIGR00499 232 LKRLIVGGFEKVYEIGRNFRNEGV-DTTHNPEFTMIEFYQAYA-DYEDLMDLTENLFKFLAQELLGTTKIT-------YG 302 (496)
T ss_pred HHHHHhCCCCceEEEecceecCCC-CCcccchhheeehhhhcC-CHHHHHHHHHHHHHHHHHHHhccccee-------cC
Confidence 999999999999999999999998 569999999999999997 799999999999999999998765532 23
Q ss_pred CccccCCCCCcccCHHHHHHHHH-HcCCCCCCCC---------------------CCCcHHHHHHhHHHHHHhCCccEEE
Q 008808 386 FEPLKYKPKTLRLTFEEGVQMLK-DAGVEIDPLG---------------------DLNTESERKLGQLVLEKYGTEFYIL 443 (553)
Q Consensus 386 ~~~~~~~~~~~~i~~~ea~~ll~-~~g~~~~~~~---------------------dl~~~~e~~l~~~v~~~~~~~~~ii 443 (553)
...+++..||+|+||.||++++. ..|++..... ++.......++.+|++++..| +||
T Consensus 303 ~~~~~~~~pf~rit~~eai~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ve~~l~~P-~fv 381 (496)
T TIGR00499 303 ELEIDFKKPFKRITMVEAIKKYDMETGIDFDDLKDFETAKALAKKIGIEVAEKSLTLGHILNELFEQFLEHTLIQP-TFI 381 (496)
T ss_pred ceeccCCCCceEEEHHHHHHHHHHhcCCCchhcCCHHHHHHHHHHcCCCcCCCCCCHHHHHHHHHHHHHHhccCCC-EEE
Confidence 33466777999999999999774 4566542111 111223344555566666554 567
Q ss_pred eccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHH------HcCCChhcH--HHHHHHhhcCC
Q 008808 444 HRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQ------ACGIDVKTI--STYIDSFRYGA 515 (553)
Q Consensus 444 ~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~------~~g~~~~~~--~~yl~a~~~G~ 515 (553)
+|||.+++|| ++++++||++++|||||++|+||||||+|+|||++|++||. +.|.+++.+ +|||+|++|||
T Consensus 382 ~dyP~~~spl-ak~~~~~p~~~~rFeL~i~G~Ei~ng~~El~dp~~q~~rf~~q~~~k~~g~~~~~~~de~yl~a~~~G~ 460 (496)
T TIGR00499 382 THYPAEISPL-AKRNPSNPEFTDRFELFIAGKEIANAFSELNDPLDQRERFEQQVAEKEAGDDEAQFVDEDFVEALEYGM 460 (496)
T ss_pred ECCchhcCcc-cccCCCCCCeEEEEEEEeCCeEEeccccccCCHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHcCC
Confidence 8999999999 78999999999999999999999999999999999999975 468887654 89999999999
Q ss_pred CCcceeeecHHHHHHHHcCCCCccccccccCCCC
Q 008808 516 PPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPL 549 (553)
Q Consensus 516 pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~ 549 (553)
|||||||||||||+|+|||++|||||++||++..
T Consensus 461 PP~gG~GiGiDRLvMlltg~~~Irdvi~FP~~~~ 494 (496)
T TIGR00499 461 PPTGGLGIGIDRLVMLLTDSKSIRDVILFPAMRP 494 (496)
T ss_pred CCCceEEEhHHHHHHHHhCCCcHheeccCCCCCC
Confidence 9999999999999999999999999999999763
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms. |
| >PRK12445 lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-102 Score=846.28 Aligned_cols=433 Identities=23% Similarity=0.374 Sum_probs=364.8
Q ss_pred cCCCCCCcccccccCcce-EEeccccC---CCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHH
Q 008808 75 VNDPQTGKWSEAVNGREW-TVVGALNG---SLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEM 150 (553)
Q Consensus 75 ~~~pyphkf~~~~~~~~~-~~i~~l~~---~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~ 150 (553)
|. ||||+|.++++..+. .++.+++. ...|++|+|+|||+++|.+| |++|++|||++++||||+..+. ++++.
T Consensus 33 g~-py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G-k~~F~~lrD~~g~iQ~~~~~~~--~~~~~ 108 (505)
T PRK12445 33 GV-AFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG-KASFVTLQDVGGRIQLYVARDS--LPEGV 108 (505)
T ss_pred CC-CCCCCCcCccCHHHHHHHhhccCcchhhcCCCEEEEEEEEEEEecCC-CcEEEEEEeCCccEEEEEECCc--cchhh
Confidence 56 999999999887553 23333321 24588999999999999999 8999999999999999998653 22232
Q ss_pred H-HHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCc
Q 008808 151 V-RFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQ 228 (553)
Q Consensus 151 ~-~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 228 (553)
+ +....|+.||+|+|+|+|.++. +|++||+++++++||+|..| |....+ ..+.
T Consensus 109 ~~~~~~~l~~Gd~V~v~G~~~~t~------~gelel~~~~~~llsk~~~plP~~~~~-------------------~~d~ 163 (505)
T PRK12445 109 YNDQFKKWDLGDIIGARGTLFKTQ------TGELSIHCTELRLLTKALRPLPDKFHG-------------------LQDQ 163 (505)
T ss_pred HHHHHhcCCCCCEEEEEEEEEecC------CCcEEEEEeEEEEEecCCCCCCccccc-------------------ccCh
Confidence 2 3456799999999999998764 56899999999999999888 875432 3589
Q ss_pred cccccccceeecc-HHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCc--cceee--cCCCCceecccChh
Q 008808 229 DTRLNNRVIDIRT-LANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS--AVFRL--DYKGQSACLAQSPQ 303 (553)
Q Consensus 229 e~Rl~~R~LdLr~-~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga--~~F~v--~~~~~~~~L~~SPq 303 (553)
++|+|+||||||+ +..+++|++||+|+++||+||.++||+||+||+|++. +||| .+|.+ ++++.++||+||||
T Consensus 164 e~r~r~Ryldl~~n~~~r~~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~--~gGa~a~pF~t~~~~~~~~~yL~~SpE 241 (505)
T PRK12445 164 EVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVI--PGGASARPFITHHNALDLDMYLRIAPE 241 (505)
T ss_pred hhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeeEec--CCCCcccceecccccCCcceeeecCHH
Confidence 9999999999995 8999999999999999999999999999999999864 5555 48975 78999999999999
Q ss_pred hHhhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhc
Q 008808 304 LHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQ 383 (553)
Q Consensus 304 l~lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~ 383 (553)
||||+|++||++||||||||||||++ |.|||||||||||||+|. ||+|+|+++|+||++++..+.+.+.. .
T Consensus 242 LylKrlivgG~~rVfeIg~~FRnE~~-~~rH~pEFTmlE~y~a~~-d~~d~m~l~E~li~~l~~~~~~~~~~-------~ 312 (505)
T PRK12445 242 LYLKRLVVGGFERVFEINRNFRNEGI-SVRHNPEFTMMELYMAYA-DYHDLIELTESLFRTLAQEVLGTTKV-------T 312 (505)
T ss_pred HHHHHHHhccCCcEEEEehhccCCCC-CCCcCcccceeeeeeecC-CHHHHHHHHHHHHHHHHHHHhcccce-------e
Confidence 99999999999999999999999998 899999999999999998 79999999999999999888765432 2
Q ss_pred CCCccccCCCCCcccCHHHHHHHHHH-------------------cCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEe
Q 008808 384 YPFEPLKYKPKTLRLTFEEGVQMLKD-------------------AGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILH 444 (553)
Q Consensus 384 ~~~~~~~~~~~~~~i~~~ea~~ll~~-------------------~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~ 444 (553)
+....+++..||+|++|.||++.+.. .|++.++..++......+++.+|++++..| +||+
T Consensus 313 ~~~~~i~~~~pf~rit~~eai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vE~~l~~P-~Fv~ 391 (505)
T PRK12445 313 YGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQP-TFIT 391 (505)
T ss_pred cCceeccCCCCceEEEHHHHHHHHhCCCCccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhhcCCC-EEEE
Confidence 23334677789999999999986532 233332222333455666777777777655 5678
Q ss_pred ccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH------cCCChhc--HHHHHHHhhcCCC
Q 008808 445 RYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA------CGIDVKT--ISTYIDSFRYGAP 516 (553)
Q Consensus 445 ~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~------~g~~~~~--~~~yl~a~~~G~p 516 (553)
|||.+++||| +.+++||++++|||||++|.||||||+|+|||++|++||++ .|.+++. ++|||+|++||||
T Consensus 392 dyP~~~spla-k~~~~~p~~~~rFeL~i~G~Ei~ng~~El~dp~eq~~rf~~q~~~~~~g~~e~~~~de~yl~al~yG~P 470 (505)
T PRK12445 392 EYPAEVSPLA-RRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLP 470 (505)
T ss_pred CCCchhCccc-ccCCCCCCceEEEEEEeCCEEEcccccccCCHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHcCCC
Confidence 8999999997 67889999999999999999999999999999999999974 3776654 4899999999999
Q ss_pred CcceeeecHHHHHHHHcCCCCccccccccCCCC
Q 008808 517 PHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPL 549 (553)
Q Consensus 517 P~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~ 549 (553)
||||||||||||+|+|||+.|||||++||+++.
T Consensus 471 P~gG~GiGiDRLvMlltg~~sIrdvi~FP~~~~ 503 (505)
T PRK12445 471 PTAGLGIGIDRMIMLFTNSHTIRDVILFPAMRP 503 (505)
T ss_pred CCCeEEEhHHHHHHHHcCCCchheEecCCCCCC
Confidence 999999999999999999999999999999864
|
|
| >PTZ00417 lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-102 Score=846.57 Aligned_cols=469 Identities=19% Similarity=0.298 Sum_probs=380.1
Q ss_pred ccccccCCCcCCcCccchhhhhc----cCCCCCCcccccccCcce-EEecccc--CCCCCCEEEEEEEEeeeccCCCceE
Q 008808 52 LSIEEEGPLANNYGDVPLQELQS----VNDPQTGKWSEAVNGREW-TVVGALN--GSLKDQEVLIRGRVHTTRPVGNKLA 124 (553)
Q Consensus 52 ~~~~~~d~~~~~yg~~~~~~~~~----~~~pyphkf~~~~~~~~~-~~i~~l~--~~~~g~~V~v~GrV~~~R~~G~kl~ 124 (553)
++.+++|.+++.|...|...+++ |.|||||+|.++++..++ ..+.++. +...+..|+|+|||+++|.+|+|++
T Consensus 73 ~~~~~~~~~~~~~~~~r~~k~~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G~k~~ 152 (585)
T PTZ00417 73 KKEEEAEVDPRLYYENRSKFIQEQKAKGINPYPHKFERTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRVSASGQKLR 152 (585)
T ss_pred cccccccCChHHHHHHHHHHHHHHHhcCCCCCCCCCcCCcCHHHHHHHhhccCccccccCCeEEEEEEEEeeecCCCCCE
Confidence 34556788999999998877765 689999999999887553 2333332 2234667999999999999997899
Q ss_pred EEEEEeCCeEEEEEeecCCCCcchH-HHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CCc
Q 008808 125 FVVVRERVSTVQCLATVKPDSVSKE-MVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PIT 202 (553)
Q Consensus 125 Fl~Lrd~~~~iQvv~~~~~~~~~~~-~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~ 202 (553)
|++|||++++|||+++.+..+.+.+ +..+.+.|+.||+|.|+|++.++. ++++||.+++|.+||+|..+ |+.
T Consensus 153 F~~L~d~~g~iQv~~~~~~~~~~~~~~~~~~~~l~~Gd~V~V~G~~~~t~------~gel~i~~~~i~llsk~l~~lP~~ 226 (585)
T PTZ00417 153 FFDLVGDGAKIQVLANFAFHDHTKSNFAECYDKIRRGDIVGIVGFPGKSK------KGELSIFPKETIILSPCLHMLPMK 226 (585)
T ss_pred EEEEEeCCeeEEEEEECCccCCCHHHHHHHHhcCCCCCEEEEEeEEcCCC------CceEEEEEEEEEEEecCCCCCCcc
Confidence 9999999999999998763222222 333457899999999999977543 56899999999999999988 863
Q ss_pred cccccccHHHHHHhhhcCCCCCCCCccccccccceeec-cHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCC
Q 008808 203 IEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 281 (553)
Q Consensus 203 ~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr-~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~e 281 (553)
. +..+.++|+++|||||| ++..+++|++||+|+++||+||+++||+||+||+|++.+.+
T Consensus 227 ~--------------------g~~d~e~r~r~RyLdL~~n~~~~~ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~GG 286 (585)
T PTZ00417 227 Y--------------------GLKDTEIRYRQRYLDLMINESTRSTFITRTKIINYLRNFLNDRGFIEVETPTMNLVAGG 286 (585)
T ss_pred c--------------------CCCCcccccccchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCeEEEeCCeeeccCCc
Confidence 2 34578999999999998 58999999999999999999999999999999999876433
Q ss_pred CCccceee--cCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHH
Q 008808 282 GGSAVFRL--DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVD 359 (553)
Q Consensus 282 gga~~F~v--~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e 359 (553)
.+|.||.+ ++++.++||+||||||||+|++||++||||||||||||++ +.||||||||||||++|+ ||+|+|+++|
T Consensus 287 A~a~PF~T~~n~~d~~lYLriSpEL~lKrLlvgG~~rVfeIgp~FRnE~~-~~rHnpEFTmlE~y~ay~-dy~dlM~l~E 364 (585)
T PTZ00417 287 ANARPFITHHNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGI-DNTHNPEFTSCEFYWAYA-DFYDLIKWSE 364 (585)
T ss_pred ccceeEEecccCCCcceEEeecHHHHHHHHHHhCCCCEEEEcccccCCCC-CCCccceeeeeeeeeecC-CHHHHHHHHH
Confidence 34458987 6799999999999999999999999999999999999998 579999999999999997 7999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHH----------------------HHHHHcCCCCCCC
Q 008808 360 RLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGV----------------------QMLKDAGVEIDPL 417 (553)
Q Consensus 360 ~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~----------------------~ll~~~g~~~~~~ 417 (553)
+||.+++..+.+.+...+...+.......+++..||++++|.+++ +++++.|+++++.
T Consensus 365 ~Li~~v~~~v~g~~~~~~~~~g~~~~~~~i~~~~pf~rit~~ea~~~~~g~~~~~~~~~~~~~~el~~~l~~~g~~~~~~ 444 (585)
T PTZ00417 365 DFFSQLVMHLFGTYKILYNKDGPEKDPIEIDFTPPYPKVSIVEELEKLTNTKLEQPFDSPETINKMINLIKENKIEMPNP 444 (585)
T ss_pred HHHHHHHHHhcCcceeeecccccccccccccCCCCceeccHHHHHHHHhCCCccccccccCCHHHHHHHHHHcCCCCCCC
Confidence 999999998876544332211100011234555566666655554 4666667665543
Q ss_pred CCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHH--
Q 008808 418 GDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQ-- 495 (553)
Q Consensus 418 ~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~-- 495 (553)
.+.....++++..+|++++...++||+|||..++||| +.+++||++++|||||++|.||+|||+|+|||.+|++||.
T Consensus 445 ~~~~~~l~~l~e~~vE~~l~~~PtFI~dyP~~~sPLa-k~~~~dp~v~eRFELfi~G~EiangysELnDp~eQr~Rf~~q 523 (585)
T PTZ00417 445 PTAAKLLDQLASHFIENKYPNKPFFIIEHPQIMSPLA-KYHRSKPGLTERLEMFICGKEVLNAYTELNDPFKQKECFSAQ 523 (585)
T ss_pred CCHHHHHHHHHHHHHHHhhCCCcEEEECCChhhCchh-hhcCCCCCeEEeEEeEECCEEEccCcchhcCHHHHHHHHHHH
Confidence 3333444555667788888764566788999999996 5788899999999999999999999999999999999875
Q ss_pred ----HcCCChh--cHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCC
Q 008808 496 ----ACGIDVK--TISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPL 549 (553)
Q Consensus 496 ----~~g~~~~--~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~ 549 (553)
+.|.+++ .+++||+||+||||||||||||||||+|+|||+.|||||++||++..
T Consensus 524 ~~~r~~g~~e~~~~Dedfl~AleyGmPPtgG~GiGIDRLvMlltg~~sIrdVi~FP~~r~ 583 (585)
T PTZ00417 524 QKDREKGDAEAFQFDAAFCTSLEYGLPPTGGLGLGIDRITMFLTNKNCIKDVILFPTMRP 583 (585)
T ss_pred HHHHHcCCCcccccHHHHHHHHHcCCCCCceEEEcHHHHHHHHcCCcchheeecCCCCCC
Confidence 3464333 35679999999999999999999999999999999999999999864
|
|
| >PRK00484 lysS lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-101 Score=836.24 Aligned_cols=436 Identities=24% Similarity=0.395 Sum_probs=363.2
Q ss_pred cCCCCCCcccccccCcce-EEeccccC---CCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHH
Q 008808 75 VNDPQTGKWSEAVNGREW-TVVGALNG---SLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEM 150 (553)
Q Consensus 75 ~~~pyphkf~~~~~~~~~-~~i~~l~~---~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~ 150 (553)
|.|||||+|.++++..+. .+..++.. ...+++|+|+|||+++|.+| |++|++|||++++||||++.+. .++++
T Consensus 21 g~~~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~G~v~~~R~~g-~~~Fi~lrD~~g~iQ~v~~~~~--~~~~~ 97 (491)
T PRK00484 21 GIDPYPNKFERTHTAAELRAKYDDKEKEELEELEIEVSVAGRVMLKRVMG-KASFATLQDGSGRIQLYVSKDD--VGEEA 97 (491)
T ss_pred CCCCCCCCCcCccCHHHHHHHhccccchhhcccCcEEEEEEEEEEEecCC-ceEEEEEEcCCccEEEEEECCc--CCHHH
Confidence 789999999999776443 22222221 12347899999999999999 9999999999999999998753 44566
Q ss_pred HHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCcc
Q 008808 151 VRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQD 229 (553)
Q Consensus 151 ~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e 229 (553)
++....|+.||+|.|+|+|++++ ++++||.++++.+||+|..+ |+...+ ..+.+
T Consensus 98 ~~~~~~l~~g~~v~v~G~v~~t~------~ge~el~~~~~~vls~~~~plP~~~~~-------------------~~~~~ 152 (491)
T PRK00484 98 LEAFKKLDLGDIIGVEGTLFKTK------TGELSVKATELTLLTKSLRPLPDKFHG-------------------LTDVE 152 (491)
T ss_pred HHHHhcCCCCCEEEEEEEEEEcC------CCcEEEEEeEEEEEeccCCCCCccccc-------------------ccchh
Confidence 77777799999999999999764 46899999999999999887 864432 35789
Q ss_pred ccccccceeec-cHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee--cCCCCceecccChhhHh
Q 008808 230 TRLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHK 306 (553)
Q Consensus 230 ~Rl~~R~LdLr-~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~SPql~l 306 (553)
+|+++|||||| ++.++++|++||+|++.||+||.++||+||+||+|++.+++++|++|.+ +||+.++||+|||||||
T Consensus 153 ~r~r~R~lDl~~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~Ga~a~pF~t~~~~~~~~~yL~~Spql~l 232 (491)
T PRK00484 153 TRYRQRYVDLIVNPESRETFRKRSKIISAIRRFLDNRGFLEVETPMLQPIAGGAAARPFITHHNALDIDLYLRIAPELYL 232 (491)
T ss_pred hhccceeeehhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCceeccCCCccceeeeeccccCCCceEeccCHHHHH
Confidence 99999999998 6999999999999999999999999999999999986543333579975 78999999999999999
Q ss_pred hhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCC
Q 008808 307 QMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPF 386 (553)
Q Consensus 307 k~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~ 386 (553)
|+||+||++||||||||||||+++ .|||||||||||||+|. ||+|+|+++|+|+++++..+.++.. + .+..
T Consensus 233 k~l~v~g~~rVfei~~~FR~E~~~-~rH~pEFt~lE~e~a~~-d~~d~m~~~E~li~~i~~~~~~~~~--i-----~~~~ 303 (491)
T PRK00484 233 KRLIVGGFERVYEIGRNFRNEGID-TRHNPEFTMLEFYQAYA-DYNDMMDLTEELIRHLAQAVLGTTK--V-----TYQG 303 (491)
T ss_pred HHHHhccCCcEEEEecceecCCCC-CCcCCceEEEEEEEecC-CHHHHHHHHHHHHHHHHHHHhCCce--E-----ecCC
Confidence 999999999999999999999985 69999999999999997 7999999999999999998875422 1 1222
Q ss_pred ccccCCCCCcccCHHHHHHHHH-----------------HcCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCc
Q 008808 387 EPLKYKPKTLRLTFEEGVQMLK-----------------DAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLA 449 (553)
Q Consensus 387 ~~~~~~~~~~~i~~~ea~~ll~-----------------~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~ 449 (553)
..+++..||+|+||.||++.+. +.|++..+..+.......+++.+|++++..|+ ||+|||.+
T Consensus 304 ~~~~~~~pf~rity~eai~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ve~~~~~P~-Fi~dyP~~ 382 (491)
T PRK00484 304 TEIDFGPPFKRLTMVDAIKEYTGVDFDDMTDEEARALAKELGIEVEKSWGLGKLINELFEEFVEPKLIQPT-FITDYPVE 382 (491)
T ss_pred EeecCCCCceEEEHHHHHHHHhCCCcccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhhcCCcE-EEECCChH
Confidence 3456667999999999997642 12222222222233345566677777776665 47889999
Q ss_pred CCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH------cCCChh--cHHHHHHHhhcCCCCccee
Q 008808 450 VRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA------CGIDVK--TISTYIDSFRYGAPPHGGF 521 (553)
Q Consensus 450 ~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~------~g~~~~--~~~~yl~a~~~G~pP~~G~ 521 (553)
++|| +|++++||++++|||||++|+||||||+|+|||++|++||.+ .|.+++ .++|||+|++|||||||||
T Consensus 383 ~~pf-~k~~~~~~~~~~rFdL~i~G~Ei~ngy~El~dp~~q~~r~~~q~~~~~~~~~e~~~~d~~yl~a~~~G~PP~gG~ 461 (491)
T PRK00484 383 ISPL-AKRHREDPGLTERFELFIGGREIANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFMDEDFLRALEYGMPPTGGL 461 (491)
T ss_pred Hhhh-hccCCCCCCeEEEEEEEECCEEEecchhhhCCHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHCCCCCCCeE
Confidence 9999 578999999999999999999999999999999999999963 355544 3479999999999999999
Q ss_pred eecHHHHHHHHcCCCCccccccccCCCC
Q 008808 522 GVGLERVVMLFCGLNNIRKTSLYPRDPL 549 (553)
Q Consensus 522 GiGidRLvm~l~g~~nIrdv~~FPr~p~ 549 (553)
|||||||+|++||+.|||||++||+++.
T Consensus 462 GiGiDRLvm~ltg~~~Irdvi~FP~~~~ 489 (491)
T PRK00484 462 GIGIDRLVMLLTDSPSIRDVILFPLMRP 489 (491)
T ss_pred EEeHHHHHHHHhCCCcHHhcccCCCCCC
Confidence 9999999999999999999999999864
|
|
| >TIGR00457 asnS asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-101 Score=826.78 Aligned_cols=418 Identities=28% Similarity=0.469 Sum_probs=374.5
Q ss_pred CCCCCEEEEEEEEeeeccCCCceEEEEEEeCC--eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCC
Q 008808 101 SLKDQEVLIRGRVHTTRPVGNKLAFVVVRERV--STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKG 178 (553)
Q Consensus 101 ~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~--~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~ 178 (553)
.+.|++|+|+|||+++|.+| |++|++|||++ +.||||++.+ .+.++.++++.|+.||+|.|+|+|.+++ +
T Consensus 13 ~~~g~~v~v~Gwv~~~R~~~-~~~F~~lrD~~~~g~iQ~v~~~~---~~~~~~~~~~~l~~gs~V~v~G~v~~~~----~ 84 (453)
T TIGR00457 13 KFVGDEVTVSGWVRTKRSSK-KIIFLELNDGSSLGPIQAVINGE---DNPYLFQLLKSLTTGSSVSVTGKVVESP----G 84 (453)
T ss_pred hcCCCEEEEEEEeEEEEcCC-CeEEEEEECCCCCccEEEEEeCC---cChHHHHHHHcCCCCcEEEEEEEEEcCC----C
Confidence 57799999999999999888 99999999999 9999999875 2456788889999999999999998754 3
Q ss_pred CceeEEEEEeEEEEeecCC-CC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHHHHHHHH
Q 008808 179 ATQQVEVQIKKLYCVSRAA-KT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGN 256 (553)
Q Consensus 179 ~t~~~Ei~v~~i~~ls~~~-~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~Rs~i~~ 256 (553)
.++++||.++++.|||+|. .+ |++.++ .+.++|+++||||+|++..+++|++||.|++
T Consensus 85 ~~~~~El~~~~i~vl~~~~~~~~P~~~~~--------------------~~~~~~~~~r~l~lR~~~~~~~lr~Rs~i~~ 144 (453)
T TIGR00457 85 KGQPVELQVKKIEVVGEAEPDDYPLQKKE--------------------HSLEFLRDIAHLRLRTNTLGAVMRVRNALSQ 144 (453)
T ss_pred CCCCEEEEEeEEEEEecCCccCCCCCccc--------------------cChhhHhhCcceecCCHHHHHHHHHHHHHHH
Confidence 4578999999999999997 45 775543 2467889999999999999999999999999
Q ss_pred HHHHHhHhCCcEEEecceeeccCCCCCccceeec---------CCCCceecccChhhHhhhcccCCCceeEEEeceecCC
Q 008808 257 IFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLD---------YKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAE 327 (553)
Q Consensus 257 ~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~---------~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E 327 (553)
.+|+||.++||+||+||+|++++++|++++|.|. |||.++||+||||||||++ ++|++||||||||||||
T Consensus 145 ~~r~~~~~~gf~eV~TP~l~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~yL~~Spql~lq~l-~~g~~rVf~i~~~FR~E 223 (453)
T TIGR00457 145 AIHRYFQENGFTWVSPPILTSNDCEGAGELFRVSTDGIDFSQDFFGKEAYLTVSGQLYLETY-ALALSKVYTFGPTFRAE 223 (453)
T ss_pred HHHHHHHHCCCEEecCCeEeecCCCCCCCceEecccccccchhccCCccccccCHHHHHHHH-hhcccCceEeeeccccC
Confidence 9999999999999999999998999999999887 8999999999999999976 68899999999999999
Q ss_pred CCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCcccc-----CCCCCcccCHHH
Q 008808 328 DSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLK-----YKPKTLRLTFEE 402 (553)
Q Consensus 328 ~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~i~~~e 402 (553)
+++|+|||||||||||||+|+ +|+|+|+++|+|+++++..+.+.++.+++.+...++...+. ...+|++|+|.|
T Consensus 224 ~~~t~rHl~EFt~le~e~~~~-~~~dvm~~~E~lv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rit~~e 302 (453)
T TIGR00457 224 KSNTSRHLSEFWMIEPEMAFA-NLNDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINNKFARITYTD 302 (453)
T ss_pred CCCCCcCcchhccceeeeecC-CHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHhcCCCCceeEHHH
Confidence 998899999999999999998 69999999999999999999988888776664433221111 124799999999
Q ss_pred HHHHHHHcCCC----CCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCC-EEE
Q 008808 403 GVQMLKDAGVE----IDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRG-EEI 477 (553)
Q Consensus 403 a~~ll~~~g~~----~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G-~Ei 477 (553)
|+++|++.+.. ..++.++++++|+.|+. .+..+++||+|||.+++|||++++ ++|++++|||||++| +||
T Consensus 303 a~~~l~~~~~~~~~~~~~g~~l~~~~e~~L~~----~~~~~p~fIt~~P~~~~pfy~~~~-~~~~~~~~fDL~~~g~gEi 377 (453)
T TIGR00457 303 AIEILKESDKNFEYEDFWGDDLQTEHERFLAE----EYFKPPVFVTNYPKDIKAFYMKLN-DDGKTVAAMDLLAPGIGEI 377 (453)
T ss_pred HHHHHHhcCCCCcCCCCCCCCCCcHHHHHHHH----HhCCCCEEEECCCcccChhhcccC-CCcCceeeeeeccCCceEE
Confidence 99999998642 34556889999999873 455566788999999999998888 899999999999999 699
Q ss_pred eeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 478 ISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 478 ~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
+||++|+|+++++.++++++|+|++.++|||++++||+|||||||||||||+|++||++|||||++|||+|+||.|
T Consensus 378 ~~gsere~~~~~l~~~~~~~g~d~~~~~~Yl~~~~~G~pPhgG~GiGieRlvm~l~g~~~Irdv~~FPr~~~~~~p 453 (453)
T TIGR00457 378 IGGSEREDDLDKLENRMKEMGLDTDALNWYLDLRKYGSVPHSGFGLGFERLLAYITGLENIRDAIPFPRTPGNINF 453 (453)
T ss_pred eehhccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn. |
| >PRK03932 asnC asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-100 Score=821.75 Aligned_cols=425 Identities=29% Similarity=0.466 Sum_probs=380.9
Q ss_pred Eeccc-cCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 94 VVGAL-NGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 94 ~i~~l-~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
.+.++ ...+.|++|+|+|||+++|.+| |++|++|||+++.+|+++..+. +.+++++++.|+.||+|.|+|+|..+
T Consensus 5 ~~~~~~~~~~~~~~V~i~G~v~~~R~~g-~~~Fi~lrD~~g~iq~~~~~~~---~~~~~~~~~~l~~~s~v~v~G~v~~~ 80 (450)
T PRK03932 5 SIKDILKGKYVGQEVTVRGWVRTKRDSG-KIAFLQLRDGSCFKQLQVVKDN---GEEYFEEIKKLTTGSSVIVTGTVVES 80 (450)
T ss_pred EHHHhcccccCCCEEEEEEEEEEEEeCC-CeEEEEEECCCCcEEEEEEcCC---ChHHHHHHhcCCCCcEEEEEEEEEcC
Confidence 34554 4578899999999999999998 9999999999999999997753 46678888999999999999999976
Q ss_pred CCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHHH
Q 008808 173 DVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQ 251 (553)
Q Consensus 173 ~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~R 251 (553)
+. .++++||++++++||++|..+ |+..++ .+.++|+++||||||++.++++|++|
T Consensus 81 ~~----~~~~~el~~~~i~vl~~~~~~~p~~~~~--------------------~~~~~~~~~r~l~lR~~~~~~~l~~R 136 (450)
T PRK03932 81 PR----AGQGYELQATKIEVIGEDPEDYPIQKKR--------------------HSIEFLREIAHLRPRTNKFGAVMRIR 136 (450)
T ss_pred CC----CCCCEEEEEEEEEEccCCCCCCCCCccc--------------------cChHHHhhCceeeccCHHHHHHHHHH
Confidence 52 346799999999999998777 875433 24688999999999999999999999
Q ss_pred HHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee---------cCCCCceecccChhhHhhhcccCCCceeEEEec
Q 008808 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL---------DYKGQSACLAQSPQLHKQMSICGDFGRVFETGP 322 (553)
Q Consensus 252 s~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v---------~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~ 322 (553)
|.|++.+|+||.++||+||+||+|++++++|++++|.| +|||.++||+||||||||++ ++|++|||||||
T Consensus 137 s~i~~~iR~f~~~~gf~EV~TP~L~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~l-~~g~~rVf~i~~ 215 (450)
T PRK03932 137 NTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAY-AMALGKVYTFGP 215 (450)
T ss_pred HHHHHHHHHHHHHCCCEEecCCceeccCCCCCCCceEeecccccccccccCCCcccccCHHHHHHHH-HhccCCeEEeee
Confidence 99999999999999999999999999899999999999 89999999999999999986 589999999999
Q ss_pred eecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCcccc-----CCCCCcc
Q 008808 323 VFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLK-----YKPKTLR 397 (553)
Q Consensus 323 ~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~ 397 (553)
|||||+++|+|||||||||||||+|. +|+|+|+++|+|+++++..+.+++..+++.++...+...++ ...||++
T Consensus 216 ~FR~E~~~t~rHl~EFt~lE~e~~~~-~~~~~m~~~e~li~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~r 294 (450)
T PRK03932 216 TFRAENSNTRRHLAEFWMIEPEMAFA-DLEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERLENFIESPFPR 294 (450)
T ss_pred ccccCCCCCccccccccccceEEecc-CHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccccCchHHHHHHhhcCCCceE
Confidence 99999998999999999999999998 69999999999999999999988888887766544332221 2358999
Q ss_pred cCHHHHHHHHHHcCCCC----CCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeC
Q 008808 398 LTFEEGVQMLKDAGVEI----DPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIR 473 (553)
Q Consensus 398 i~~~ea~~ll~~~g~~~----~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~ 473 (553)
|||.||+++|++.|.++ .++.++++..|+.|+. ++++.| +||+|||.+++|||+++++++ ++++|||||+|
T Consensus 295 ity~eA~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~---~~~~~p-vfI~~yP~~~~pfy~~~~~~~-~~~~~fdLl~~ 369 (450)
T PRK03932 295 ITYTEAIEILQKSGKKFEFPVEWGDDLGSEHERYLAE---EHFKKP-VFVTNYPKDIKAFYMRLNPDG-KTVAAMDLLAP 369 (450)
T ss_pred eEHHHHHHHHHHcCCCcCCCCCcccccChHHHHHHHH---HhcCCc-EEEECCCcccCcccCcCCCCC-CEEEEEEEEcC
Confidence 99999999999987643 4556788888988875 456655 668899999999998888888 99999999999
Q ss_pred C-EEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCC
Q 008808 474 G-EEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIA 552 (553)
Q Consensus 474 G-~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~ 552 (553)
| .||++|++|+|+++.+.++++++|+++..++||+++++||+|||||||||||||+|++||++|||||++|||+|+||.
T Consensus 370 g~~El~~g~~r~~~~~~l~~~~~~~g~~~~~~~~yl~~~~~G~pP~gG~GiGidRL~m~l~g~~nIrdv~~FPr~~~r~~ 449 (450)
T PRK03932 370 GIGEIIGGSQREERLDVLEARIKELGLNKEDYWWYLDLRRYGSVPHSGFGLGFERLVAYITGLDNIRDVIPFPRTPGRAE 449 (450)
T ss_pred CCceeCCHHHHhhhHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCCCCCC
Confidence 9 799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 008808 553 P 553 (553)
Q Consensus 553 p 553 (553)
|
T Consensus 450 p 450 (450)
T PRK03932 450 F 450 (450)
T ss_pred C
Confidence 8
|
|
| >COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-101 Score=802.90 Aligned_cols=434 Identities=24% Similarity=0.410 Sum_probs=366.8
Q ss_pred cCCCCCCcccccccCcce-EEecccc-CCCC--CCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHH
Q 008808 75 VNDPQTGKWSEAVNGREW-TVVGALN-GSLK--DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEM 150 (553)
Q Consensus 75 ~~~pyphkf~~~~~~~~~-~~i~~l~-~~~~--g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~ 150 (553)
|+||||+.|+.+.+..+. .++.+.+ +... ...|+|+|||+++|.+| |++|++|.|++++||++++++. +..+.
T Consensus 28 g~~~yp~~~~~~~~~~~l~~~~~~~~~~el~~~~~~v~vAGRi~~~R~~G-K~~F~~i~d~~gkiQ~yi~k~~--~~~~~ 104 (502)
T COG1190 28 GIDPYPNDFERTHTSADLREKYADKTKEELEALNIEVSVAGRIMTIRNMG-KASFADLQDGSGKIQLYVNKDE--VGEEV 104 (502)
T ss_pred CCCCCCCcCcccccHHHHHHHHhccchhhhhhccceeEEecceeeecccC-ceeEEEEecCCceEEEEEeccc--cchhh
Confidence 789999999999866432 1222111 2222 23499999999999999 9999999999999999999874 33444
Q ss_pred HH-HHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCc
Q 008808 151 VR-FVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQ 228 (553)
Q Consensus 151 ~~-~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 228 (553)
++ +.+.+..||||+|+|.+.++. +|+++|.|+++++|++|+.| |... ++++|+
T Consensus 105 ~~~~~~~~dlGDiigv~G~~~~T~------~GelSv~v~~~~lLsKsL~pLPeK~-------------------hgL~D~ 159 (502)
T COG1190 105 FEALFKKLDLGDIIGVEGPLFKTK------TGELSVSVEELRLLSKSLRPLPEKF-------------------HGLTDK 159 (502)
T ss_pred HHHHHhccccCCEEeeeeeeeecC------CCceEEEEEEEeeecccCCCCChhh-------------------cCCccH
Confidence 44 678899999999999998765 67999999999999999999 8533 456799
Q ss_pred cccccccceeecc-HHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee--cCCCCceecccChhhH
Q 008808 229 DTRLNNRVIDIRT-LANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLH 305 (553)
Q Consensus 229 e~Rl~~R~LdLr~-~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~SPql~ 305 (553)
|+|+|+|||||.. +..+.+|..||+|+++||+||+++||+||+||+|+..+.+..|+||.+ |.++.++|||+|||||
T Consensus 160 E~RyR~RylDLi~N~e~r~~f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i~GGA~ArPF~ThhNald~dlyLRIApELy 239 (502)
T COG1190 160 EIRYRQRYLDLIVNPESRQTFIKRSKIIRAIREFLDDRGFLEVETPMLQPIPGGAAARPFITHHNALDMDLYLRIAPELY 239 (502)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCeEeccccccccCCCcccccceeeecccCCceEEeeccHHH
Confidence 9999999999997 789999999999999999999999999999999986443334459987 5689999999999999
Q ss_pred hhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCC
Q 008808 306 KQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYP 385 (553)
Q Consensus 306 lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~ 385 (553)
||+||+|||+||||||++||||+. +.||||||||||+|+||+ ||+|+|+++|+|+++++..+.+... ..|+
T Consensus 240 LKRliVGG~erVfEIgr~FRNEGi-d~tHNPEFTmlE~Y~AYa-Dy~D~m~ltE~Li~~~a~~v~gt~~-------v~y~ 310 (502)
T COG1190 240 LKRLIVGGFERVFEIGRNFRNEGI-DTTHNPEFTMLEFYQAYA-DYEDLMDLTEELIKELAKEVNGTTK-------VTYG 310 (502)
T ss_pred HHHHHhcCchhheeeccccccCCC-ccccCcchhhHHHHHHHh-HHHHHHHHHHHHHHHHHHHhcCCeE-------EEEC
Confidence 999999999999999999999998 899999999999999998 6999999999999999999886432 2455
Q ss_pred CccccCCCCCcccCHHHHHH------------------HHHHcCCCCCCCC--CCCcHHHHHHhHHHHHHhCCccEEEec
Q 008808 386 FEPLKYKPKTLRLTFEEGVQ------------------MLKDAGVEIDPLG--DLNTESERKLGQLVLEKYGTEFYILHR 445 (553)
Q Consensus 386 ~~~~~~~~~~~~i~~~ea~~------------------ll~~~g~~~~~~~--dl~~~~e~~l~~~v~~~~~~~~~ii~~ 445 (553)
...++|.+||.|+++.+|+. ++++.|+.+.+.. .......+++..++++++-.|.|+ +|
T Consensus 311 ~~~id~~~pf~ri~m~dal~e~~g~~~~~~~~~e~~~~~ak~~~i~~~~~~~~~~g~ll~~lFe~~vE~~liqPTFv-~d 389 (502)
T COG1190 311 GQEIDFSKPFKRITMVDALKEYLGVDFDDLFDDEEAKELAKKHGIEVEKYGTWGLGHLLNELFEELVEAKLIQPTFV-TD 389 (502)
T ss_pred CEeEecCCCeeeeehHHHHHHHhCccccccCCHHHHHHHHHHhCCCcCccccccHHHHHHHHHHHHhhhhhcCCcee-ec
Confidence 66788999999999888773 2333344433221 133345667777788888888775 57
Q ss_pred cCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH------cCCChhc--HHHHHHHhhcCCCC
Q 008808 446 YPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA------CGIDVKT--ISTYIDSFRYGAPP 517 (553)
Q Consensus 446 ~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~------~g~~~~~--~~~yl~a~~~G~pP 517 (553)
||..++|+ +++++++|++++|||||++|.||||||+|+|||..|++||.+ .|.|++. +++||+||+|||||
T Consensus 390 ~P~eiSPL-ak~~~~~p~~teRFElfi~g~EiaNaysELNDP~dQ~~RF~~Q~~~k~~Gddea~~~Dedfv~ALeyGmPP 468 (502)
T COG1190 390 HPVEISPL-AKRHRSNPGLTERFELFIGGKEIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDEDFVEALEYGMPP 468 (502)
T ss_pred CccccCcc-ccCCCCCcchhhhheeeeccEEeeeccchhcCHHHHHHHHHHHHHHHHcCCccccccCHHHHHHHhcCCCC
Confidence 99999999 799999999999999999999999999999999999999963 5777653 58999999999999
Q ss_pred cceeeecHHHHHHHHcCCCCccccccccCC
Q 008808 518 HGGFGVGLERVVMLFCGLNNIRKTSLYPRD 547 (553)
Q Consensus 518 ~~G~GiGidRLvm~l~g~~nIrdv~~FPr~ 547 (553)
|||||||||||||+|||..+|||||+||-.
T Consensus 469 TgG~GiGIDRLvMllT~~~sIRdVilFP~m 498 (502)
T COG1190 469 TGGLGIGIDRLVMLLTNSPSIRDVILFPAM 498 (502)
T ss_pred CCCccccHHHHHHHHcCCCchhheeccccc
Confidence 999999999999999999999999999963
|
|
| >PLN02221 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-98 Score=811.86 Aligned_cols=418 Identities=28% Similarity=0.451 Sum_probs=367.0
Q ss_pred CCCCCCEEEEEEEEeeeccCCC-ceEEEEEEeCC--eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCcc
Q 008808 100 GSLKDQEVLIRGRVHTTRPVGN-KLAFVVVRERV--STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEI 176 (553)
Q Consensus 100 ~~~~g~~V~v~GrV~~~R~~G~-kl~Fl~Lrd~~--~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~ 176 (553)
..++|+.|+|+|||+++|.+|+ +++|++|||++ +.||||+..+.. .....|+.||+|.|+|+|+.++. .
T Consensus 46 ~~~~g~~V~I~GWV~~iR~~Gk~~i~Fl~LRDgs~~g~iQvVv~~~~~-------~~~~~L~~ES~V~V~G~V~~~~~-~ 117 (572)
T PLN02221 46 AGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVMVDSSLY-------DLSTLVATGTCVTVDGVLKVPPE-G 117 (572)
T ss_pred hhcCCCEEEEEEEEEehhhCCCceEEEEEEeCCcccccEEEEEcCchh-------hHHhcCCCceEEEEEEEEEeCCc-c
Confidence 5788999999999999999995 38999999999 799999976411 11235999999999999987764 2
Q ss_pred CCCceeEEEEEeEEEEeecCCC-C-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHHHHHH
Q 008808 177 KGATQQVEVQIKKLYCVSRAAK-T-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQV 254 (553)
Q Consensus 177 ~~~t~~~Ei~v~~i~~ls~~~~-~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~Rs~i 254 (553)
++++|.+||++++|.|||+|.. + |++... .+.|+++++|||++|++..+++||+||.|
T Consensus 118 ~~~~~~iEl~v~~i~vl~~a~~~~~Pi~~~~--------------------~~~e~lrr~~hLR~R~~~~~Ai~RiRS~i 177 (572)
T PLN02221 118 KGTKQKIELSVEKVIDVGTVDPTKYPLPKTK--------------------LTLEFLRDVLHLRSRTNSISAVARIRNAL 177 (572)
T ss_pred CCCCccEEEEEeEEEEEecCCCCCCCCCCCc--------------------CChHHHhhcchhhcCCHHHHHHHHHHHHH
Confidence 4567889999999999999964 5 764321 35788889999999999999999999999
Q ss_pred HHHHHHHhHhCCcEEEecceeeccCCCCCccceee---------------------------------------------
Q 008808 255 GNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--------------------------------------------- 289 (553)
Q Consensus 255 ~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--------------------------------------------- 289 (553)
+++||+||.++||+||+||+|++++||||++.|.|
T Consensus 178 ~~aiR~ff~~~gFiEI~TP~Lt~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (572)
T PLN02221 178 AFATHSFFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAA 257 (572)
T ss_pred HHHHHHHHHHCCCEEEeCCeeccccCCCCccceeeeecccccccccccccccCcccchhhhhhhhhhhhhcchhhhhhcc
Confidence 99999999999999999999999999999998876
Q ss_pred ---------------------------------------------cCCCCceecccChhhHhhhcccCCCceeEEEecee
Q 008808 290 ---------------------------------------------DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVF 324 (553)
Q Consensus 290 ---------------------------------------------~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~F 324 (553)
+|||+++||+||||||||+++ ++++|||||||||
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dyFg~~ayLtqS~QLy~e~~~-~~l~rVfeIgP~F 336 (572)
T PLN02221 258 KASKEEITAAVAELKIAKESLAHIEERSKLKPGLPKKDGKIDYSKDFFGRQAFLTVSGQLQVETYA-CALSSVYTFGPTF 336 (572)
T ss_pred ccchhhhhhhhhhhhhhhhhhhhhhhhhhcccCCcccccccccccccCCCCeeeccCHHHHHHHHH-HhcCCeEEEccce
Confidence 699999999999999999965 5699999999999
Q ss_pred cCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCcc---c--cCCCCCcccC
Q 008808 325 RAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEP---L--KYKPKTLRLT 399 (553)
Q Consensus 325 R~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~---~--~~~~~~~~i~ 399 (553)
|||+++|+||||||||||+||+|. ||+|+|+++|+|++++++.+.++|..+++.+...++... + .+..||+||+
T Consensus 337 RAE~s~T~RHL~EFtmlE~Emaf~-d~~dvm~l~E~lv~~i~~~l~~~~~~~l~~l~~~~~~~~~~~l~~~~~~pf~RIt 415 (572)
T PLN02221 337 RAENSHTSRHLAEFWMVEPEIAFA-DLEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRIT 415 (572)
T ss_pred ecCCCCCCcccccccceeeeeecC-CHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCchhhhhhhhccCCCceEEE
Confidence 999999999999999999999998 799999999999999999999999988877654443211 1 1345899999
Q ss_pred HHHHHHHHHHc---CCC----CCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEe
Q 008808 400 FEEGVQMLKDA---GVE----IDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFI 472 (553)
Q Consensus 400 ~~ea~~ll~~~---g~~----~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~ 472 (553)
|.||+++|++. |.+ +.++.|+++++|+.|++.+ ++. ++||+|||..++|||++ .++|+.+++|||||+
T Consensus 416 y~EAi~~L~~~~~~g~~~~~~~~~G~dl~~e~Er~L~~~~---~~~-pvfv~dyP~~~~pfy~~-~~~d~~~~~~fDLl~ 490 (572)
T PLN02221 416 YTEAIELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVL---FQK-PLIVYNYPKGIKAFYMR-LNDDEKTVAAMDVLV 490 (572)
T ss_pred HHHHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHh---cCC-cEEEEcCChhhCccccc-CCCCCceEEEEEEec
Confidence 99999999884 543 3566789999999997643 233 47788999999999854 556788999999999
Q ss_pred CC-EEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCC
Q 008808 473 RG-EEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRI 551 (553)
Q Consensus 473 ~G-~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl 551 (553)
+| .||++|++|+|+++.+.++++++|+++..++|||++++||+|||||||||||||+|++||+.|||||++|||+|+|+
T Consensus 491 ~g~~El~~g~~R~~r~e~l~~~~~~~g~~~~~~~~yLda~~~G~pPh~G~GlGiERLvm~l~g~~nIRdvi~FPR~~~~~ 570 (572)
T PLN02221 491 PKVGELIGGSQREERYDVIKQRIEEMGLPIEPYEWYLDLRRYGTVKHCGFGLGFERMILFATGIDNIRDVIPFPRYPGKA 570 (572)
T ss_pred CCceEECCHHHHHHHHHHHHHHHHHcCCChhhhHHHHHHhhCCCCCCceEEEeHHHHHHHHcCCCchheEeecCCCcCcC
Confidence 97 79999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 008808 552 A 552 (553)
Q Consensus 552 ~ 552 (553)
.
T Consensus 571 ~ 571 (572)
T PLN02221 571 D 571 (572)
T ss_pred C
Confidence 4
|
|
| >PTZ00385 lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-97 Score=813.05 Aligned_cols=441 Identities=21% Similarity=0.324 Sum_probs=354.7
Q ss_pred CcccccccCcce-EEecccc--CCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHH-hc
Q 008808 81 GKWSEAVNGREW-TVVGALN--GSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RS 156 (553)
Q Consensus 81 hkf~~~~~~~~~-~~i~~l~--~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~-~~ 156 (553)
|+|.++++..++ .++.++. +...++.|+|+|||+++|.+| |++|++|||++++|||+++.+.. ++++++++. ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrV~~~R~~G-k~~F~~LrD~~G~IQvv~~~~~~-~~~~~~~~~~~~ 158 (659)
T PTZ00385 81 SSFRGITPISEVRERYGYLASGDRAAQATVRVAGRVTSVRDIG-KIIFVTIRSNGNELQVVGQVGEH-FTREDLKKLKVS 158 (659)
T ss_pred ccCcccccHHHHHHHhhccccccccCCCEEEEEEEEEeeeccC-CeEEEEEEECCceEEEEEECCcc-CCHHHHHHHHhC
Confidence 677777766442 3333332 223366799999999999999 89999999999999999987631 255566655 57
Q ss_pred CCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCC--CCCCccccccccHHHHHHhhhcCCCCCCCCccccccc
Q 008808 157 LSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAA--KTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNN 234 (553)
Q Consensus 157 l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~--~~P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~ 234 (553)
|+.||+|+|+|+|.++. ++++||+++++++||++. ++|+.... ....+.++.|+||||
T Consensus 159 l~~gdiV~V~G~v~~t~------~GeleI~~~~i~lLska~~~~~~~~p~~--------------~k~~~~~d~e~R~r~ 218 (659)
T PTZ00385 159 LRVGDIIGADGVPCRMQ------RGELSVAASRMLILSPYVCTDQVVCPNL--------------RGFTVLQDNDVKYRY 218 (659)
T ss_pred CCCCCEEEEEEEEEecC------CceEEEEeeEEEEechhhhccccCCCCC--------------ccccccCChhhhccc
Confidence 99999999999998653 578999999999999954 33221100 012345789999999
Q ss_pred cceeec-cHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee--cCCCCceecccChhhHhhhccc
Q 008808 235 RVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQMSIC 311 (553)
Q Consensus 235 R~LdLr-~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~SPql~lk~li~ 311 (553)
|||||| ++.++++|++||+|+++||+||+++||+||+||+|++.++++||++|.+ ++++.++||+||||||||+||+
T Consensus 219 RyLDL~~n~~~~~ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~~ga~a~pF~t~~n~~~~~~yL~~SPELylKrLiv 298 (659)
T PTZ00385 219 RFTDMMTNPCVIETIKKRHVMLQALRDYFNERNFVEVETPVLHTVASGANAKSFVTHHNANAMDLFLRVAPELHLKQCIV 298 (659)
T ss_pred ceeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccCCCCCccceEeecccCCCCEEecCChHHHHHHHhh
Confidence 999997 5889999999999999999999999999999999998888889999988 4589999999999999999999
Q ss_pred CCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccC
Q 008808 312 GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKY 391 (553)
Q Consensus 312 ~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~ 391 (553)
||++||||||||||||++ +.||||||||||||++|. ||+|||+++|+|+.+++..+.+.....+...........+++
T Consensus 299 gG~erVyeIg~~FRnE~~-~~rH~pEFTmlE~y~a~~-d~~d~m~l~E~li~~~~~~v~g~~~~~~~~~~~~g~~~~i~~ 376 (659)
T PTZ00385 299 GGMERIYEIGKVFRNEDA-DRSHNPEFTSCEFYAAYH-TYEDLMPMTEDIFRQLAMRVNGTTVVQIYPENAHGNPVTVDL 376 (659)
T ss_pred cccCCEEEEeceecCCCC-CCCccccccceeeeeecC-CHHHHHHHHHHHHHHHHHHhcCCeeEEeeccccCCCcccccC
Confidence 999999999999999998 589999999999999998 799999999999999999887643211100000000014677
Q ss_pred CCCCcccCHHHHHHHHHHcCCCCCCCCCCCcHHH--------------------------HHHhHHHHHHhCCccEEEec
Q 008808 392 KPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESE--------------------------RKLGQLVLEKYGTEFYILHR 445 (553)
Q Consensus 392 ~~~~~~i~~~ea~~ll~~~g~~~~~~~dl~~~~e--------------------------~~l~~~v~~~~~~~~~ii~~ 445 (553)
..||+|+||.+++. +..|+++.+.+|+++..+ .+++.++++++..| +||+|
T Consensus 377 ~~Pf~Rit~~d~~~--e~~G~d~~~~~dl~~~~e~~~~~~~~~~~gi~~~~~~~~g~~~~~lfe~~ve~~l~qP-tFI~d 453 (659)
T PTZ00385 377 GKPFRRVSVYDEIQ--RMSGVEFPPPNELNTPKGIAYMSVVMLRYNIPLPPVRTAAKMFEKLIDFFITDRVVEP-TFVMD 453 (659)
T ss_pred CCCceEEeHHHHHH--HHhCCCCCccccCCCHHHHHHHHHHHHHcCCCCCcccchhHHHHHHHHHHHHHhhCCc-EEEeC
Confidence 78999999655543 335777655445544332 23445555566555 45678
Q ss_pred cCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHH-----HcCCChh---cHHHHHHHhhcCCCC
Q 008808 446 YPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQ-----ACGIDVK---TISTYIDSFRYGAPP 517 (553)
Q Consensus 446 ~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~-----~~g~~~~---~~~~yl~a~~~G~pP 517 (553)
||.+++|| ++++++||++++|||||++|.||+|||+|+|||.+|++||. ..+.|++ .++|||+||+|||||
T Consensus 454 yP~e~sPL-ak~~~~dp~~teRFELfi~G~EiaNGysELnDp~eQr~Rfe~q~~~k~~gd~ea~~~DedfL~AleyGmPP 532 (659)
T PTZ00385 454 HPLFMSPL-AKEQVSRPGLAERFELFVNGIEYCNAYSELNDPHEQYHRFQQQLVDRQGGDEEAMPLDETFLKSLQVGLPP 532 (659)
T ss_pred CccccCcc-cccCCCCCCeEEEEEEEeCCeEeeecccccCCHHHHHHHHHHHHHHHhcCCchhhccHHHHHHHHHcCCCC
Confidence 99999999 78999999999999999999999999999999999999994 3344443 348999999999999
Q ss_pred cceeeecHHHHHHHHcCCCCccccccccCCCC
Q 008808 518 HGGFGVGLERVVMLFCGLNNIRKTSLYPRDPL 549 (553)
Q Consensus 518 ~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~ 549 (553)
|||||||||||+|+|||+.|||||++||+...
T Consensus 533 tgG~GIGIDRLvMlltg~~sIReVilFP~mr~ 564 (659)
T PTZ00385 533 TAGWGMGIDRALMLLTNSSNIRDGIIFPLLRQ 564 (659)
T ss_pred CCceEEcHHHHHHHHcCCcchhheecCccccc
Confidence 99999999999999999999999999997653
|
|
| >PTZ00425 asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-95 Score=791.11 Aligned_cols=421 Identities=23% Similarity=0.373 Sum_probs=362.9
Q ss_pred CCCCCEEEEEEEEeeeccCCC-ceEEEEEEeCCe--EEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCc--
Q 008808 101 SLKDQEVLIRGRVHTTRPVGN-KLAFVVVRERVS--TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-- 175 (553)
Q Consensus 101 ~~~g~~V~v~GrV~~~R~~G~-kl~Fl~Lrd~~~--~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~-- 175 (553)
.+.|+.|+|+|||+++|.+|+ +++|++|||+++ .||||++... ...+-+.+|+.||+|.|+|+|+..+..
T Consensus 78 ~~~g~~Vtl~GWv~~iR~~g~~~~~Fv~lrDgsg~~~iQiVv~~~~-----~~~~~l~~l~~gs~v~v~G~v~~~~~~~~ 152 (586)
T PTZ00425 78 KYIDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQSI-----ENYEKLLKCGVGCCFRFTGKLIISPVQNE 152 (586)
T ss_pred ccCCCEEEEEEEEeehhhcCCceEEEEEEECCCCCcceEEEECCch-----HHHHHHhcCCCccEEEEEEEEEcCCcccc
Confidence 567999999999999999985 599999999997 6999996531 123345679999999999999865432
Q ss_pred -cCC-CceeEEEEE-----eEEEEeecCCC--C-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhH
Q 008808 176 -IKG-ATQQVEVQI-----KKLYCVSRAAK--T-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQ 245 (553)
Q Consensus 176 -~~~-~t~~~Ei~v-----~~i~~ls~~~~--~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~ 245 (553)
..+ .++.+||.+ +++.||+.+.. + |++.+. .+.|+++++||||+|++..+
T Consensus 153 n~~g~~~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k~--------------------~~~e~lr~~rhL~lR~~~~~ 212 (586)
T PTZ00425 153 NKKGLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKN--------------------HGKEFLREVAHLRPRSYFIS 212 (586)
T ss_pred CcCCCCCccEEEEEecCCCceEEEEeccCCCCCCCCCCcc--------------------CChhhhhhccceeccCHHHH
Confidence 122 256699998 79999998842 3 654321 35788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee------------------------------------
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL------------------------------------ 289 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v------------------------------------ 289 (553)
++||+||.|..++|+||.++||+||+||+|++++||||++.|.|
T Consensus 213 avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~~EGa~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 292 (586)
T PTZ00425 213 SVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDCEGGGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNAN 292 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCCCCCcceEEeeecccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999998986
Q ss_pred ---------------------------cCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCCCCCCCcCccccee
Q 008808 290 ---------------------------DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLD 342 (553)
Q Consensus 290 ---------------------------~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE 342 (553)
+|||+++||+||||||||++ ++|++|||+||||||||+++|+|||+||||||
T Consensus 293 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~yF~k~ayL~~S~QLylE~~-~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE 371 (586)
T PTZ00425 293 NNNGNSSSSNAVSSPAYPDQYLIDYKKDFFSKQAFLTVSGQLSLENL-CSSMGDVYTFGPTFRAENSHTSRHLAEFWMIE 371 (586)
T ss_pred ccccccccccccccccccccccccccccccCcceEEEcCchHHHHHH-HhccCCEEEEeceEeCCCCCCCCCCcccceEE
Confidence 58999999999999999976 57899999999999999999999999999999
Q ss_pred EEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCcc---c-c-CCCCCcccCHHHHHHHHHHcC----CC
Q 008808 343 VEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEP---L-K-YKPKTLRLTFEEGVQMLKDAG----VE 413 (553)
Q Consensus 343 ~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~---~-~-~~~~~~~i~~~ea~~ll~~~g----~~ 413 (553)
+||+|. +++++|+++|+|+++++..+.+.+..++..++....... + . +..||+||+|.||+++|++.+ .+
T Consensus 372 ~E~af~-d~~d~m~~~E~li~~v~~~vl~~~~~~i~~~~~~~~~~l~~~l~~~~~~pf~rIty~EAi~iL~~~~~~~~~~ 450 (586)
T PTZ00425 372 PEIAFA-DLYDNMELAESYIKYCIGYVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNVIDLLQPYSDSFEVP 450 (586)
T ss_pred EEEecC-CHHHHHHHHHHHHHHHHHHHhcccccccccccccccccHHHHHHHhcCCCCCcCCHHHHHHHHHHhHHhcCCC
Confidence 999998 799999999999999999998877777655432111110 1 1 235899999999999998764 45
Q ss_pred CCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCC-EEEeeceeccCCHHHHHH
Q 008808 414 IDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRG-EEIISGAQRIHIPEFLAE 492 (553)
Q Consensus 414 ~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G-~Ei~~G~~r~~d~~~l~~ 492 (553)
++++.|+++++|+.|+..+ ++. ++||+|||..++|||+++++++ .++++|||+++| +||++|++|+|+++.|.+
T Consensus 451 ~~~G~dL~~e~Er~L~~~~---~~~-PvFItdyP~~~kPFY~~~~~d~-~~v~~fDLlvpgiGEI~gGsqRe~~~e~L~~ 525 (586)
T PTZ00425 451 VKWGMDLQSEHERFVAEQI---FKK-PVIVYNYPKDLKAFYMKLNEDQ-KTVAAMDVLVPKIGEVIGGSQREDNLERLDK 525 (586)
T ss_pred CCcccccchHHHHHHHHHh---cCC-cEEEECCccccCccccCcCCCC-CeEEEEeEEccCceEEccCCCccccHHHHHH
Confidence 6778899999999997643 233 4678899999999999887655 788999999998 799999999999999999
Q ss_pred HHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 493 RAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 493 r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
+++++|++++.++|||++++||+|||||||||||||+|++||++|||||++|||+|+++.+
T Consensus 526 ~ike~gl~~e~~~wYLd~rryG~pPhgGfGLGiERLvm~ltGl~nIRDvi~FPR~~g~~~~ 586 (586)
T PTZ00425 526 MIKEKKLNMESYWWYRQLRKFGSHPHAGFGLGFERLIMLVTGVDNIKDTIPFPRYPGHAEF 586 (586)
T ss_pred HHHHcCCChhHHHHHHHHhhCCCCCCceEEEcHHHHHHHHcCCCchheEEECcCCCCcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999864
|
|
| >PLN02603 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-95 Score=794.99 Aligned_cols=417 Identities=25% Similarity=0.423 Sum_probs=365.2
Q ss_pred CCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCe--EEEEEeecCCCCcchHHHHHHh--cCCCCceEEEEEEEecCCCc
Q 008808 100 GSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVS--TVQCLATVKPDSVSKEMVRFVR--SLSNESIVDVIGVVSVPDVE 175 (553)
Q Consensus 100 ~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~--~iQvv~~~~~~~~~~~~~~~~~--~l~~esiV~V~G~v~~~~~~ 175 (553)
....|++|+|+|||+++|.+| +++|++|||+++ .||||+..+.. . .+.+. .|+.||+|.|+|+|+.++
T Consensus 103 ~~~~g~~V~v~GwV~~iR~~g-~~~Fi~l~Dgs~~~~lQ~v~~~~~~----~-~~~l~~~~l~~gs~V~V~G~v~~~~-- 174 (565)
T PLN02603 103 LARVGKTLNVMGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTPDAE----G-YDQVESGLITTGASVLVQGTVVSSQ-- 174 (565)
T ss_pred cccCCCEEEEEEEEEEEEeCC-CeEEEEEECCCCCEeEEEEEECcHH----H-HHHHhhcCCCCCCEEEEEEEEEecC--
Confidence 367799999999999999999 999999999885 69999976521 1 22222 499999999999998765
Q ss_pred cCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHHHHHH
Q 008808 176 IKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQV 254 (553)
Q Consensus 176 ~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~Rs~i 254 (553)
++.+.+||+++++.+|++|.++ |++.++. +.+.+..+||||+|++.++++||+||+|
T Consensus 175 --~~~~~~EL~v~~i~vlg~a~~~~Pi~~~~~--------------------s~e~lr~~~hLr~Rt~~~~ai~RiRS~i 232 (565)
T PLN02603 175 --GGKQKVELKVSKIVVVGKSDPSYPIQKKRV--------------------SREFLRTKAHLRPRTNTFGAVARVRNAL 232 (565)
T ss_pred --CCCccEEEEEeEEEEEECCCCCCCCccccc--------------------chhhhhhhhhhhhccHHHHHHHHHHHHH
Confidence 3346799999999999999877 8765432 3466677899999999999999999999
Q ss_pred HHHHHHHhHhCCcEEEecceeeccCCCCCccceee------------------------------cCCCCceecccChhh
Q 008808 255 GNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL------------------------------DYKGQSACLAQSPQL 304 (553)
Q Consensus 255 ~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v------------------------------~~~~~~~~L~~SPql 304 (553)
++.+|+||.++||+|||||+|++++|||+++.|.| +|||+++||+|||||
T Consensus 233 ~~air~ff~~~gF~eV~TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL 312 (565)
T PLN02603 233 AYATHKFFQENGFVWVSSPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQL 312 (565)
T ss_pred HHHHHHHHHHCCCEEEECCeecccCCCccccCceeeeccccccccccccccccccCcccccccchhhhCcceeeccCchH
Confidence 99999999999999999999999999999987854 578999999999999
Q ss_pred HhhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcC
Q 008808 305 HKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQY 384 (553)
Q Consensus 305 ~lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~ 384 (553)
|||++ ++|++|||+||||||||+++|+|||+||||||+||+|. |++|+|+++|++++++++.+.++|..+++.+....
T Consensus 313 ~~E~~-~~~l~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af~-dl~d~m~~~E~~l~~~~~~v~~~~~~el~~~~~~~ 390 (565)
T PLN02603 313 NGETY-ATALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLNDDMACATAYLQYVVKYILENCKEDMEFFNTWI 390 (565)
T ss_pred HHHHH-HhcccceEEEecceeCCCCCCccccccceeeeeeeecC-CHHHHHHHHHHHHHHHHHHHHcccHhHHHhcCCcc
Confidence 99985 67899999999999999999999999999999999997 79999999999999999999999988887665433
Q ss_pred CCcccc-----CCCCCcccCHHHHHHHHHHcCC----CCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCC
Q 008808 385 PFEPLK-----YKPKTLRLTFEEGVQMLKDAGV----EIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYT 455 (553)
Q Consensus 385 ~~~~~~-----~~~~~~~i~~~ea~~ll~~~g~----~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~ 455 (553)
....++ ...||++|+|.||+++|++.+. ...++.||++++|+.|++ ..++.+++||+|||..++|||+
T Consensus 391 ~~~~~~~l~~~~~~~f~rity~EAi~iL~~~~~~~~~~~~~g~dl~~e~Er~L~~---~~~~~~PvfVtdyP~~ikpFYm 467 (565)
T PLN02603 391 EKGIIDRLSDVVEKNFVQLSYTDAIELLLKAKKKFEFPVKWGLDLQSEHERYITE---EAFGGRPVIIRDYPKEIKAFYM 467 (565)
T ss_pred cccHHHHHHHhcCCCCCCCCHHHHHHHHHHhccccCCCCCccccccHHHHHHHHH---HhccCCCEEEECCccccCcccc
Confidence 221111 2348999999999999988743 356778999999999975 3355556788999999999995
Q ss_pred cccCCCCcceeEEEEEeCC-EEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcC
Q 008808 456 MPCHDNSLYSNSFDVFIRG-EEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCG 534 (553)
Q Consensus 456 ~~~~~~~~~~~~fdl~~~G-~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g 534 (553)
+ ..+|+.++++|||+++| +||++|+||+|+++++.++++++|++++.|+|||++++||+|||||||||||||+|++||
T Consensus 468 ~-~~~d~~~v~~fDLl~p~~gEl~gGsqRe~r~e~L~~~~~e~g~~~e~y~wYLdl~r~G~pPhgGfGlG~ERLvm~ltg 546 (565)
T PLN02603 468 R-ENDDGKTVAAMDMLVPRVGELIGGSQREERLEYLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFATG 546 (565)
T ss_pred c-cCCCCCeeEEEEEEecCceEecCHHHHHhhHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCceeEEcHHHHHHHHhC
Confidence 4 55678899999999987 799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccCCCCCCC
Q 008808 535 LNNIRKTSLYPRDPLRIA 552 (553)
Q Consensus 535 ~~nIrdv~~FPr~p~rl~ 552 (553)
++|||||++|||+|+++.
T Consensus 547 ~~nIRdvi~FPR~~g~~~ 564 (565)
T PLN02603 547 IDNIRDAIPFPRVPGSAE 564 (565)
T ss_pred CCchhheeeccCCCCCCC
Confidence 999999999999999974
|
|
| >PRK02983 lysS lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-95 Score=847.64 Aligned_cols=446 Identities=20% Similarity=0.289 Sum_probs=368.9
Q ss_pred cCccchhhhhc----cCCCCCCcccccccCcceEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEe
Q 008808 64 YGDVPLQELQS----VNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLA 139 (553)
Q Consensus 64 yg~~~~~~~~~----~~~pyphkf~~~~~~~~~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~ 139 (553)
+-..|+...++ |.|||||+|..+++. +++.+...|++|+|+|||+++|.+| |++|++|||++++||||+
T Consensus 613 ~~~~r~~k~~~l~~~g~~pyp~~~~~~~~~------~~~~~~~~~~~V~v~Grv~~~R~~G-~~~F~~lrD~~g~iQ~v~ 685 (1094)
T PRK02983 613 QVRVRLAKLEALRAAGVDPYPVGVPPTHTV------AEALDAPTGEEVSVSGRVLRIRDYG-GVLFADLRDWSGELQVLL 685 (1094)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCccCH------HHHHHhcCCCEEEEEEEEEEEeeCC-CeEEEEEEeCCeeEEEEE
Confidence 33344444433 789999999988663 4454557899999999999999999 999999999999999999
Q ss_pred ecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhh
Q 008808 140 TVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASK 218 (553)
Q Consensus 140 ~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~ 218 (553)
+.+.. .++.+..|.+.|+.||+|.|+|+|.+++ ++++||.+++++++++|..| |.+.+
T Consensus 686 ~~~~~-~~~~~~~~~~~l~~gd~V~v~G~v~~t~------~ge~ei~~~~i~ll~k~~~plP~k~~-------------- 744 (1094)
T PRK02983 686 DASRL-EQGSLADFRAAVDLGDLVEVTGTMGTSR------NGTLSLLVTSWRLAGKCLRPLPDKWK-------------- 744 (1094)
T ss_pred ECCcc-chhhHHHHHhcCCCCCEEEEEEEEEEcC------CCCEEEEEeEEEEEeccCcCCCCccc--------------
Confidence 87632 2344556777899999999999998764 46899999999999999887 75432
Q ss_pred cCCCCCCCCccccccccceeecc-HHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee--cCCCCc
Q 008808 219 EGVQLPRVNQDTRLNNRVIDIRT-LANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQS 295 (553)
Q Consensus 219 ~~~~~~~~~~e~Rl~~R~LdLr~-~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~ 295 (553)
+..+.++|+|+||||||+ +.++++|++||+|++.||+||.++||+||+||+|++..+++++++|.| +|++++
T Consensus 745 -----~~~d~e~R~r~R~lDL~~n~~~~~~~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~gGa~a~pF~t~~~~~~~~ 819 (1094)
T PRK02983 745 -----GLTDPEARVRQRYLDLAVNPEARDLLRARSAVVRAVRETLVARGFLEVETPILQQVHGGANARPFVTHINAYDMD 819 (1094)
T ss_pred -----cCCChhhcchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCEeeccCCCcccceeEeeecCCCcc
Confidence 346899999999999985 899999999999999999999999999999999986555555679954 789999
Q ss_pred eecccChhhHhhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHH
Q 008808 296 ACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKK 375 (553)
Q Consensus 296 ~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~ 375 (553)
+||+||||||||+|++||++||||||||||||++ +.||||||||||+||+|. ||+|+|+++|+|++++++.+.+....
T Consensus 820 ~yLriSPELylKrLivgG~erVFEIg~~FRnE~~-~~rHnpEFTmLE~y~a~~-dy~d~m~l~E~li~~i~~~v~~~~~~ 897 (1094)
T PRK02983 820 LYLRIAPELYLKRLCVGGVERVFELGRNFRNEGV-DATHNPEFTLLEAYQAHA-DYDTMRDLTRELIQNAAQAAHGAPVV 897 (1094)
T ss_pred chhhcChHHHHHHHHhcccCceEEEcceecCCCC-CCCccccccchhhhhhcC-CHHHHHHHHHHHHHHHHHHHhCCcEE
Confidence 9999999999999999999999999999999998 569999999999999997 79999999999999999988754221
Q ss_pred HHHHhhhcCCCccccCCCCCcccCHHHHHHH------------------HHHcCCCCCCCCCCCcHHHHHHhHHHHHHhC
Q 008808 376 ELEAVAKQYPFEPLKYKPKTLRLTFEEGVQM------------------LKDAGVEIDPLGDLNTESERKLGQLVLEKYG 437 (553)
Q Consensus 376 ~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~l------------------l~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~ 437 (553)
... +......++++..||+++||.||++. +++.|++.++..+.......++..+|++++.
T Consensus 898 ~~~--~~~~~~~~i~~~~pf~rit~~eai~~~~g~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~l~~~l~~~~ve~~~~ 975 (1094)
T PRK02983 898 MRP--DGDGVLEPVDISGPWPVVTVHDAVSEALGEEIDPDTPLAELRKLCDAAGIPYRTDWDAGAVVLELYEHLVEDRTT 975 (1094)
T ss_pred eeC--CccccccccccCCCceEEEHHHHHHHHhCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHHHHhhcC
Confidence 000 00111224667789999999999862 2333444433223333455667777888887
Q ss_pred CccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH-----cCCChhcH---HHHHH
Q 008808 438 TEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA-----CGIDVKTI---STYID 509 (553)
Q Consensus 438 ~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~-----~g~~~~~~---~~yl~ 509 (553)
.|+| |+|||.+++||| |++++||++++|||||++|+||+|||+|+|||.+|++||.+ .+.|++.+ +|||+
T Consensus 976 ~P~F-v~dyP~~~spla-~~~~~~p~~~erFdL~i~G~Ei~ng~~El~Dp~eq~~r~~~q~~~~~~~d~e~~~~De~yl~ 1053 (1094)
T PRK02983 976 FPTF-YTDFPTSVSPLT-RPHRSDPGLAERWDLVAWGVELGTAYSELTDPVEQRRRLTEQSLLAAGGDPEAMELDEDFLQ 1053 (1094)
T ss_pred CCEE-EECCCccccccc-ccCCCCCCeeEEEEEEECCEEEeccccccCCHHHHHHHHHHHHHHHhCCChhhccccHHHHH
Confidence 6655 678999999995 78999999999999999999999999999999999988864 35555533 79999
Q ss_pred HhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCC
Q 008808 510 SFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPL 549 (553)
Q Consensus 510 a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~ 549 (553)
|++||||||||||||||||+|++||. |||||++||+...
T Consensus 1054 al~yGmPP~gG~GiGiDRLvM~ltg~-sIRdvi~FP~~k~ 1092 (1094)
T PRK02983 1054 ALEYAMPPTGGLGMGVDRLVMLLTGR-SIRETLPFPLVKP 1092 (1094)
T ss_pred HHHcCCCCCCeEEeeHHHHHHHHhCC-ChheEecCCcCCC
Confidence 99999999999999999999999996 9999999998653
|
|
| >PLN02532 asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-93 Score=779.72 Aligned_cols=400 Identities=21% Similarity=0.367 Sum_probs=350.4
Q ss_pred eccCCCceEEEEEEeCCeE--EEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEe
Q 008808 116 TRPVGNKLAFVVVRERVST--VQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCV 193 (553)
Q Consensus 116 ~R~~G~kl~Fl~Lrd~~~~--iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~l 193 (553)
.|.+| +++|++|||+++. ||||+..... . ....|+.|++|.|+|+|+.... ...+|.+||.+++|.||
T Consensus 129 ~r~~g-~i~FI~LrDGSg~~~lQvVv~~~~~--~-----~~~~L~~Es~V~V~G~V~~~~~--~~~~g~iEl~v~~i~VL 198 (633)
T PLN02532 129 APPPP-SVAYLLISDGSCVASLQVVVDSALA--P-----LTQLMATGTCILAEGVLKLPLP--AQGKHVIELEVEKILHI 198 (633)
T ss_pred cccCC-CcEEEEEECCCCccceEEEEeCCcc--c-----HhhcCCCceEEEEEEEEEecCC--CCCCCcEEEEeeEEEEE
Confidence 78899 9999999999997 9999986521 1 1267999999999999987632 23467899999999999
Q ss_pred ecCC-CC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHHHHHHHHHHHHHhHhCCcEEEe
Q 008808 194 SRAA-KT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIH 271 (553)
Q Consensus 194 s~~~-~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~ 271 (553)
+++. .+ |++.+. .+.|+++++||||||++.++++||+||.|++++|+||.++||+||+
T Consensus 199 g~a~~~p~Pi~~k~--------------------~~~E~LR~~RhLdLRt~~~~ailRiRS~i~~aiR~ff~~~GFiEV~ 258 (633)
T PLN02532 199 GTVDPEKYPLSKKR--------------------LPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQ 258 (633)
T ss_pred ecCCCCCCcccccc--------------------CCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEee
Confidence 9986 34 654322 2467788999999999999999999999999999999999999999
Q ss_pred cceeeccCCCCCccc-----------------------------------------------------------------
Q 008808 272 TPKLIAGSSEGGSAV----------------------------------------------------------------- 286 (553)
Q Consensus 272 TP~l~~~~~egga~~----------------------------------------------------------------- 286 (553)
||+|++++||||++.
T Consensus 259 TPiLT~s~~EGa~elF~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (633)
T PLN02532 259 VPIITTTDATGFGEMFRVTTLLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDLRKTN 338 (633)
T ss_pred CCeecccCCCccccccceeccccccccccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccc
Confidence 999999999999865
Q ss_pred ------------------------eeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCCCCCCCcCccccee
Q 008808 287 ------------------------FRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLD 342 (553)
Q Consensus 287 ------------------------F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE 342 (553)
|.++|||+++||+||||||||+++ +||+|||+|||+||||+++|+|||+||||||
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~f~~dyFg~~ayLtqS~QLylE~~~-~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE 417 (633)
T PLN02532 339 QLASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESYA-CALGNVYTFGPRFRADRIDSARHLAEMWMVE 417 (633)
T ss_pred cccccccccccccccccccccccccccccCCCCeeeccCHHHHHHHHH-HhcCceEEEccceecCCCCCCccccccccee
Confidence 566799999999999999999875 6899999999999999999999999999999
Q ss_pred EEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCc-----cccCCCCCcccCHHHHHHHHHHcC-----C
Q 008808 343 VEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFE-----PLKYKPKTLRLTFEEGVQMLKDAG-----V 412 (553)
Q Consensus 343 ~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~i~~~ea~~ll~~~g-----~ 412 (553)
+||+|. ||+|+|+++|+||+++++.+.++|..+++.++..+... ...+..||+||+|.||+++|++.+ .
T Consensus 418 ~Emaf~-d~~dvM~l~E~lI~~v~k~v~~~~~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~~~~~~~e~ 496 (633)
T PLN02532 418 VEMAFS-ELEDAMNCAEDYFKFLCKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDKKFET 496 (633)
T ss_pred eeehhc-CHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHHhcCCCccc
Confidence 999998 69999999999999999999999988887765433221 113446899999999999998764 2
Q ss_pred CCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCC-EEEeeceeccCCHHHHH
Q 008808 413 EIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRG-EEIISGAQRIHIPEFLA 491 (553)
Q Consensus 413 ~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G-~Ei~~G~~r~~d~~~l~ 491 (553)
..+++.||++++|+.|.. ..++.| +||+|||..++|||++++ +|+.++++||||++| +||++|++|+|+++.|.
T Consensus 497 ~~~~g~dL~~e~Er~L~~---~~~~~P-vFVtdyP~~ikPFY~~~~-~d~~~v~~FDLlvp~~GEIigGsqRE~r~e~L~ 571 (633)
T PLN02532 497 KPEWGIALTTEHLSYLAD---EIYKKP-VIIYNYPKELKPFYVRLN-DDGKTVAAFDLVVPKVGTVITGSQNEERMDILN 571 (633)
T ss_pred ccccCCccChHHHHHHHH---HHcCCC-EEEECCChhhchhhCCcC-CCCCceEEEEEecCCCeEEeeCcEeHHHHHHHH
Confidence 356778999999999864 335666 567899999999998766 467899999999996 69999999999999999
Q ss_pred HHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCC
Q 008808 492 ERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIA 552 (553)
Q Consensus 492 ~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~ 552 (553)
++++++|++++.|+|||++++||+|||||||||||||+||+||++|||||++|||+++++.
T Consensus 572 ~~~ke~Gld~e~~ewYLdlrryG~pPHgGfGLG~ERLvm~ltGl~nIRDvi~FPR~~g~~~ 632 (633)
T PLN02532 572 ARIEELGLPREQYEWYLDLRRHGTVKHSGFSLGFELMVLFATGLPDVRDAIPFPRSWGKAN 632 (633)
T ss_pred HHHHHcCCChhhHHHHHHHHHcCCCCCeEEEEhHHHHHHHHhCCCchheEeecCCCcCcCC
Confidence 9999999999999999999999999999999999999999999999999999999999974
|
|
| >TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-92 Score=767.53 Aligned_cols=430 Identities=28% Similarity=0.495 Sum_probs=339.9
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
+.|++|+..++|++|+|+|||+++|.+| |++|++|||+++.||||++.+ .++++++..|+.||+|.|+|+|...
T Consensus 4 ~~~~~l~~~~~g~~V~l~GwV~~~R~~G-kl~Fi~LrD~sg~iQvv~~~~-----~~~~~~~~~L~~esvV~V~G~v~~r 77 (583)
T TIGR00459 4 HYCGQLRTEHLGQTVTLAGWVNRRRDLG-GLIFIDLRDRSGIVQVVCDPD-----ADALKLAKGLRNEDVVQVKGKVSAR 77 (583)
T ss_pred eeHhhcchhhCCCEEEEEEEEEEEEcCC-CcEEEEEEeCCccEEEEEeCC-----HHHHHHHhcCCCCCEEEEEEEEEeC
Confidence 5677888888999999999999999999 899999999999999999764 3566778899999999999999864
Q ss_pred C-CccC--CCceeEEEEEeEEEEeecCCCCCCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHH
Q 008808 173 D-VEIK--GATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (553)
Q Consensus 173 ~-~~~~--~~t~~~Ei~v~~i~~ls~~~~~P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~ 249 (553)
+ .+++ .+++++||.++++++||+|..+|+.+.+. .++.++||++||||||++.++++|+
T Consensus 78 ~~~~~n~~~~tg~iEl~~~~i~iL~~a~~~P~~~~~~------------------~~~~~~Rl~~RyLDLR~~~~~~~lr 139 (583)
T TIGR00459 78 PEGNINRNLDTGEIEILAESITLLNKSKTPPLIIEKT------------------DAEEEVRLKYRYLDLRRPEMQQRLK 139 (583)
T ss_pred CccccCccCCCCcEEEEEeEEEEeecCCCCCCccccc------------------ccchhhhcccceEEcCCHHHHHHHH
Confidence 3 2222 46788999999999999997557765421 2578999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecC--CCCc-eecccChhhHhhhcccCCCceeEEEeceecC
Q 008808 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY--KGQS-ACLAQSPQLHKQMSICGDFGRVFETGPVFRA 326 (553)
Q Consensus 250 ~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~--~~~~-~~L~~SPql~lk~li~~g~~rVfeIg~~FR~ 326 (553)
+||+|++++|+||.++||+||+||+|+.++++| |.+|.+.+ ++.. ++|+||||||||+||+||++|||||||||||
T Consensus 140 ~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~~eG-ar~f~vp~~~~~~~~y~L~qSpQlykq~l~v~G~ervfqI~~~FR~ 218 (583)
T TIGR00459 140 LRHKVTKAVRNFLDQQGFLEIETPMLTKSTPEG-ARDYLVPSRVHKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRD 218 (583)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeeccCCCCC-CcceeeeeecCCCceeecCCCHHHHHHHHHhcccCcEEEEcceeeC
Confidence 999999999999999999999999999766664 67787755 3444 5599999999999999999999999999999
Q ss_pred CCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhh----------hHHHHHHhhhcCCC-----ccccC
Q 008808 327 EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNV----------CKKELEAVAKQYPF-----EPLKY 391 (553)
Q Consensus 327 E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~----------~~~~i~~~~~~~~~-----~~~~~ 391 (553)
|++++.|| ||||||||||+|. +|+|+|+++|+|++++++.+.+. |..-+...+..-|- +-.++
T Consensus 219 E~~~t~r~-pEFT~le~E~af~-d~~dvm~~~E~li~~v~~~v~~~~~~~pf~r~ty~ea~~~yGsDkPDlR~~~~~~d~ 296 (583)
T TIGR00459 219 EDLRADRQ-PEFTQIDMEMSFM-TQEDVMELIEKLVSHVFLEVKGIDLKKPFPVMTYAEAMERYGSDKPDLRFPLELIDV 296 (583)
T ss_pred CCCCCCCC-cccCcceeeecCC-CHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEHHHHHHHHCCCCCccccCcccccH
Confidence 99988888 9999999999998 69999999999999999887541 11111111111110 00000
Q ss_pred C---------------------------C---CCcccCHHHHHHHHHHcCCC------CCCCCC------CCcH------
Q 008808 392 K---------------------------P---KTLRLTFEEGVQMLKDAGVE------IDPLGD------LNTE------ 423 (553)
Q Consensus 392 ~---------------------------~---~~~~i~~~ea~~ll~~~g~~------~~~~~d------l~~~------ 423 (553)
. . .+.+-..++..++.++.|.+ +..... +-.+
T Consensus 297 ~~~~~~~~f~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 376 (583)
T TIGR00459 297 TDLFKDSEFKVFSNLINDGGRVKAIRVPGGWAELSRKSIKELRKFAKEYGAKGLAYLKVNEDGINSPIKKFLDEKKGKIL 376 (583)
T ss_pred HHhhccCCcchhhhhhccCCeEEEEEecCCcCccCHhHHHHHHHHHHHcCCCcceEEEEcCCcCCCchhhhcCHHHHHHH
Confidence 0 0 01112233333444444433 111100 0011
Q ss_pred ---------------------HHHHHhHHHHHH---hC------CccEEEeccCCc-----------CCCCCCcccCCCC
Q 008808 424 ---------------------SERKLGQLVLEK---YG------TEFYILHRYPLA-----------VRPFYTMPCHDNS 462 (553)
Q Consensus 424 ---------------------~e~~l~~~v~~~---~~------~~~~ii~~~P~~-----------~~pfy~~~~~~~~ 462 (553)
....||++..+- ++ ..|.||+|||.. ++|| |+|+++|+
T Consensus 377 ~~~~~~~~gd~~~~~a~~~~~~~~~lG~lr~~l~~~~~l~~~~~~~~~wV~dfPlfe~~~~~~~~a~hhPf-T~p~~~d~ 455 (583)
T TIGR00459 377 LERTDAQNGDILLFGAGSKKIVLDALGALRLKLGKDLGLVDPDLFSFLWVVDFPMFEKDKEGRLCAAHHPF-TMPKDEDL 455 (583)
T ss_pred HHHhCCCCCCEEEEecCcchhHHHHHHHHHHHHHHHcCCcCCCCceEEEEEeCCCccccCCCceeeeECCC-CCCCCCCh
Confidence 112245443221 22 247889999997 9999 89999888
Q ss_pred c---------ceeEEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCChh----cHHHHHHHhhcCCCCcceeeecHHHHH
Q 008808 463 L---------YSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVK----TISTYIDSFRYGAPPHGGFGVGLERVV 529 (553)
Q Consensus 463 ~---------~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~----~~~~yl~a~~~G~pP~~G~GiGidRLv 529 (553)
. .+++|||++||.||+|||.|+|||+.|+++|+..|++.+ .+.+||+||+||+|||||+|||||||+
T Consensus 456 ~~l~~~p~~~~~~~yDLvlnG~ElggGs~rihd~~~Q~~~f~~l~~~~ee~~~~f~~ll~Al~yG~PPhgG~alG~DRlv 535 (583)
T TIGR00459 456 ENLEAAPEEALAEAYDLVLNGVELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYGTPPHAGFALGLDRLM 535 (583)
T ss_pred hhhhcChhhhhhheeeEEEeceEecceeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCcCceeccHHHHH
Confidence 7 899999999999999999999999999999999898765 468999999999999999999999999
Q ss_pred HHHcCCCCccccccccCCCCC
Q 008808 530 MLFCGLNNIRKTSLYPRDPLR 550 (553)
Q Consensus 530 m~l~g~~nIrdv~~FPr~p~r 550 (553)
|+|||.+||||||+||++.+-
T Consensus 536 mlLt~~~sIRDVIaFPKt~~g 556 (583)
T TIGR00459 536 MLLTGTDNIRDVIAFPKTTAA 556 (583)
T ss_pred HHHcCCCchhheeecCCCCCC
Confidence 999999999999999998764
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences. |
| >COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-88 Score=707.59 Aligned_cols=416 Identities=30% Similarity=0.508 Sum_probs=344.8
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
.+.|++|..+++|++|+++||||+.|.+| +|+|++|||..|.+|+|++.+ .+.+.++.+..|+.|++|.|+|+|..
T Consensus 3 t~~cg~l~~~~vG~~V~L~GWV~r~Rd~G-gliFiDLRDr~GivQvv~~~~---~~~~~~~~a~~lr~E~vi~V~G~V~~ 78 (585)
T COG0173 3 THYCGELRESHVGQTVTLSGWVHRRRDHG-GLIFIDLRDREGIVQVVFDPE---DSPEAFEVASRLRNEFVIQVTGTVRA 78 (585)
T ss_pred ceeccccCHHHCCCEEEEEeeeeeccccC-CeEEEEcccCCCeEEEEECCc---cCHHHHHHHHhcCceEEEEEEEEEEe
Confidence 36789999999999999999999999999 899999999999999999975 35677888999999999999999876
Q ss_pred CCC---ccCCCceeEEEEEeEEEEeecCCCCCCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHH
Q 008808 172 PDV---EIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIF 248 (553)
Q Consensus 172 ~~~---~~~~~t~~~Ei~v~~i~~ls~~~~~P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if 248 (553)
.+. ..+-.||++||++++|.|||.|..+|+.+.|.. .++.|+||.|||||||.|.++..+
T Consensus 79 R~e~~~N~~l~TGeiEv~a~~i~vln~s~~lPf~i~d~~-----------------~~~Ee~RLkYRyLDLRR~~m~~~l 141 (585)
T COG0173 79 RPEGTINPNLPTGEIEVLAEEIEVLNASKTLPFQIEDET-----------------NASEEIRLKYRYLDLRRPEMQKNL 141 (585)
T ss_pred cCccccCCCCCcceEEEEeeeEEEEecCCCCCcCCCCCC-----------------CcchhhhhhhhhhhhcCHHHHHHH
Confidence 643 334578999999999999999988799887631 257899999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeec---CCCCceecccChhhHhhhcccCCCceeEEEeceec
Q 008808 249 RIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLD---YKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFR 325 (553)
Q Consensus 249 ~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~---~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR 325 (553)
++||+++.++|+||+++||+||+||+|+.+ ++.||+.|.|+ +.|..+.|.||||||||.||++||+|+|||++|||
T Consensus 142 ~lR~kv~~~iR~~ld~~gF~EiETPiLtkS-TPEGARDfLVPSRv~~G~FYALPQSPQlfKQLLMvsGfdRYyQIarCFR 220 (585)
T COG0173 142 KLRSKVTKAIRNFLDDQGFLEIETPILTKS-TPEGARDFLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFR 220 (585)
T ss_pred HHHHHHHHHHHHHHhhcCCeEeecCccccC-CCccccccccccccCCCceeecCCCHHHHHHHHHHhcccceeeeeeeec
Confidence 999999999999999999999999999875 45569999986 47889999999999999999999999999999999
Q ss_pred CCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHH
Q 008808 326 AEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQ 405 (553)
Q Consensus 326 ~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ 405 (553)
+|+.+..|+ |||||||+||+|. +-+|+|+++|+|+..+|+.+.+ ++...||+|++|.||+.
T Consensus 221 DEDlRaDRQ-PEFTQiD~EmSF~-~~edv~~~~E~l~~~vf~~~~~-----------------i~l~~pFprmtY~eAm~ 281 (585)
T COG0173 221 DEDLRADRQ-PEFTQIDLEMSFV-DEEDVMELIEKLLRYVFKEVKG-----------------IELKTPFPRMTYAEAMR 281 (585)
T ss_pred ccccccccC-CcceeEeEEeecC-CHHHHHHHHHHHHHHHHHHhcC-----------------CccCCCcccccHHHHHH
Confidence 999999999 9999999999998 5799999999999999987753 11122445555555542
Q ss_pred -------------------------------------------------------------HHHHcCC------CCCCCC
Q 008808 406 -------------------------------------------------------------MLKDAGV------EIDPLG 418 (553)
Q Consensus 406 -------------------------------------------------------------ll~~~g~------~~~~~~ 418 (553)
..+..|. .+...
T Consensus 282 ~YGSDKPDlRf~lel~dvt~~~~~~~F~vF~~~~~~~~~v~ai~vp~~~~~sRk~id~~~~~ak~~gakGLa~ikv~~~- 360 (585)
T COG0173 282 RYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNALANGGRVKAIVVPGGASLSRKQIDELTEFAKIYGAKGLAYIKVEED- 360 (585)
T ss_pred HhCCCCCcccCCceehhHHHHhcCCCcceehhhhhcCCeEEEEEcCCccccCHHHHHHHHHHHHHcCCCceEEEEEecC-
Confidence 1111110 00000
Q ss_pred CCCcHHH----------------------------------HHHhHHH---HHHhC------CccEEEeccCC-------
Q 008808 419 DLNTESE----------------------------------RKLGQLV---LEKYG------TEFYILHRYPL------- 448 (553)
Q Consensus 419 dl~~~~e----------------------------------~~l~~~v---~~~~~------~~~~ii~~~P~------- 448 (553)
.+..... ..||.+- ...++ ..|.||.|||.
T Consensus 361 ~~~gpi~kfl~e~~~~~l~~~~~~~~gD~iff~A~~~~~~~~~lGalR~~l~~~l~li~~~~~~f~WVvDFPlfE~~ee~ 440 (585)
T COG0173 361 GLKGPIAKFLSEEILEELIERLGAEDGDIIFFVADKKKVVNKALGALRLKLGKELGLIDKDQFKFLWVVDFPLFEWDEEE 440 (585)
T ss_pred CccchHHHhcCHHHHHHHHHHhCCCCCCEEEEecCcHHHHHHHHHHHHHHHHHHhCCCCcccceEEEEEecCccCCcccc
Confidence 0111111 2233321 11121 24789999995
Q ss_pred -----cCCCCCCcccCCCCc---------ceeEEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCChh----cHHHHHHH
Q 008808 449 -----AVRPFYTMPCHDNSL---------YSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVK----TISTYIDS 510 (553)
Q Consensus 449 -----~~~pfy~~~~~~~~~---------~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~----~~~~yl~a 510 (553)
.++|| |||++.+.. .+..|||++||.||+|||.|+|+|+.|++-|+..|++++ .+..+|+|
T Consensus 441 ~~~~a~HHPF-T~P~~~~~~~l~~~p~~~~a~aYDlVlNG~ElggGSiRIh~~eiQ~~vF~~lg~~~eea~ekFGFll~A 519 (585)
T COG0173 441 GRYVAAHHPF-TMPKPEDLELLEADPESVRARAYDLVLNGYELGGGSIRIHDPEIQEKVFEILGISPEEAEEKFGFLLEA 519 (585)
T ss_pred CceecccCCC-CCCCccchhhhhcCHHHhhhhhccEEeccEeeccceeeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 47999 999765432 478999999999999999999999999999999999987 45678999
Q ss_pred hhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCC
Q 008808 511 FRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLR 550 (553)
Q Consensus 511 ~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~r 550 (553)
|+||.|||||+|+|||||+|+|+|..||||||+||++.+-
T Consensus 520 f~yGaPPHgGiA~GlDRlvmll~g~~sIReVIAFPKt~~a 559 (585)
T COG0173 520 FKYGAPPHGGIAFGLDRLVMLLTGAESIRDVIAFPKTQQA 559 (585)
T ss_pred HhcCCCCCcceeccHHHHHHHHcCCCchhheeecCCCccc
Confidence 9999999999999999999999999999999999998653
|
|
| >PLN02903 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-87 Score=734.15 Aligned_cols=438 Identities=26% Similarity=0.413 Sum_probs=335.4
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
.+.|++|+..++|++|+|+|||+++|.+| +++|++|||+++.||||++.+. +.++.+++..|+.||+|.|+|+|..
T Consensus 60 t~~cg~l~~~~~gk~V~l~GWV~~~R~~G-~l~FidLRD~~G~iQvV~~~~~---~~~~~~~~~~L~~esvV~V~G~V~~ 135 (652)
T PLN02903 60 SHLCGALSVNDVGSRVTLCGWVDLHRDMG-GLTFLDVRDHTGIVQVVTLPDE---FPEAHRTANRLRNEYVVAVEGTVRS 135 (652)
T ss_pred CCchhhcchhhCCCEEEEEEEEEEEecCC-CcEEEEEEcCCccEEEEEeCCc---cHHHHHHHhcCCCCCEEEEEEEEEe
Confidence 46799999999999999999999999999 8999999999999999998652 3567788899999999999999986
Q ss_pred CC-Ccc--CCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHH
Q 008808 172 PD-VEI--KGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGI 247 (553)
Q Consensus 172 ~~-~~~--~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~i 247 (553)
++ .++ +..||++||.+++++||++|..+ |+.+.+... ....++.++||+|||||||++.++++
T Consensus 136 r~~~~~n~~~~tGeiEl~~~~i~VL~~a~~~lPf~i~~~~~-------------~~~~~~ee~Rl~~RyLDLR~~~~q~~ 202 (652)
T PLN02903 136 RPQESPNKKMKTGSVEVVAESVDILNVVTKSLPFLVTTADE-------------QKDSIKEEVRLRYRVLDLRRPQMNAN 202 (652)
T ss_pred CCCcCcCCCCCCCCEEEEEeEEEEEecCCCCCCcccccccc-------------ccccCChhhhhccceeecCCHHHHHH
Confidence 53 222 33467899999999999999766 887754320 01135789999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHh-CCcEEEecceeeccCCCCCccceeecC---CCCceecccChhhHhhhcccCCCceeEEEece
Q 008808 248 FRIQSQVGNIFRQFLLS-ENFVEIHTPKLIAGSSEGGSAVFRLDY---KGQSACLAQSPQLHKQMSICGDFGRVFETGPV 323 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~-~gF~EV~TP~l~~~~~egga~~F~v~~---~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~ 323 (553)
|++||+|++.+|+||.+ +||+||+||+|+.++++| |.+|.+.+ .+..+||+||||||||+||++|++||||||||
T Consensus 203 lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~eG-ardf~v~~~~~~g~~y~L~qSPQlykQ~Lm~~G~~RvFqIa~~ 281 (652)
T PLN02903 203 LRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTPEG-ARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDRYYQIARC 281 (652)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEECCeeccCCCCC-CcccEEeeecCCCcccccCCCHHHHHHHHHhccCCcEEEEehh
Confidence 99999999999999997 999999999999877775 55665533 36778899999999999999999999999999
Q ss_pred ecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhh----------hHHHHHHhhhcCCC-------
Q 008808 324 FRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNV----------CKKELEAVAKQYPF------- 386 (553)
Q Consensus 324 FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~----------~~~~i~~~~~~~~~------- 386 (553)
||||+++++|| ||||||||||+|. +|+|+|+++|+|++++++.+.+. |..-++..+..-|-
T Consensus 282 FR~E~~~t~Rh-pEFTqLE~E~sf~-d~~dvm~~~E~li~~v~~~~~~~~~~~PF~rity~eA~~~ygsDKPDlRf~~~l 359 (652)
T PLN02903 282 FRDEDLRADRQ-PEFTQLDMELAFT-PLEDMLKLNEDLIRQVFKEIKGVQLPNPFPRLTYAEAMSKYGSDKPDLRYGLEL 359 (652)
T ss_pred hccCCCCCCcc-cceeeeeeeecCC-CHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEHHHHHHHHcCCCCcccCCcee
Confidence 99999988888 9999999999998 69999999999999999866431 11111111110000
Q ss_pred ---------ccc----------------cCCC--CCcccCHH---HHHHHHHHcCC------CCCCCCCC----------
Q 008808 387 ---------EPL----------------KYKP--KTLRLTFE---EGVQMLKDAGV------EIDPLGDL---------- 420 (553)
Q Consensus 387 ---------~~~----------------~~~~--~~~~i~~~---ea~~ll~~~g~------~~~~~~dl---------- 420 (553)
..+ .+.. .+.+-... +.+....+.|. .+.....+
T Consensus 360 ~dv~~~~~~~~f~~f~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gl~~~~~~~~~~~~~~~~~~k~~ 439 (652)
T PLN02903 360 VDVSDVFAESSFKVFAGALESGGVVKAICVPDGKKISNNTALKKGDIYNEAIKSGAKGLAFLKVLDDGELEGIKALVESL 439 (652)
T ss_pred eEhHHhhcCCCchhhhhhhccCCeEEEEEeCCCCccchhhhcccHHHHHHHHHcCCCceEEEEEcCCCCccCccchhhcC
Confidence 000 0000 00000000 00000000110 00000000
Q ss_pred C--------------------------cHHHHHHhHHHH---HHhC------CccEEEeccCC------------cCCCC
Q 008808 421 N--------------------------TESERKLGQLVL---EKYG------TEFYILHRYPL------------AVRPF 453 (553)
Q Consensus 421 ~--------------------------~~~e~~l~~~v~---~~~~------~~~~ii~~~P~------------~~~pf 453 (553)
+ ......||.+-. +.++ ..|.||+|||. .++||
T Consensus 440 ~~~~~~~l~~~~~~~~GD~~~~~a~~~~~~~~~lG~lR~~l~~~l~l~~~~~~~flWV~dFPlFe~~ee~~~~~a~HHPF 519 (652)
T PLN02903 440 SPEQAEQLLAACGAGPGDLILFAAGPTSSVNKTLDRLRQFIAKTLDLIDPSRHSILWVTDFPMFEWNEDEQRLEALHHPF 519 (652)
T ss_pred CHHHHHHHHHHhCCCCCcEEEEECCcchHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCCCCccCCCCceEecCCCC
Confidence 0 011233444321 1222 24789999996 47999
Q ss_pred CCcccCCCC-----cceeEEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCChh----cHHHHHHHhhcCCCCcceeeec
Q 008808 454 YTMPCHDNS-----LYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVK----TISTYIDSFRYGAPPHGGFGVG 524 (553)
Q Consensus 454 y~~~~~~~~-----~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~----~~~~yl~a~~~G~pP~~G~GiG 524 (553)
|+|+++|- -.+.+|||++||.||+|||+|+||++.|+++|+..|++++ .+.+||+||+||+|||||+|+|
T Consensus 520 -Tap~~~d~~~l~~~~a~~YDLVlNG~EiggGS~Rih~~~~q~~~f~~~g~~~e~~~~~F~~~l~a~~yG~PphgG~alG 598 (652)
T PLN02903 520 -TAPNPEDMGDLSSARALAYDMVYNGVEIGGGSLRIYRRDVQQKVLEAIGLSPEEAESKFGYLLEALDMGAPPHGGIAYG 598 (652)
T ss_pred -CCCCCcchhhhhhhhhhcceeEecceeeccceEecCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCceeec
Confidence 99977653 2467999999999999999999999999999999999875 4689999999999999999999
Q ss_pred HHHHHHHHcCCCCccccccccCCCCC
Q 008808 525 LERVVMLFCGLNNIRKTSLYPRDPLR 550 (553)
Q Consensus 525 idRLvm~l~g~~nIrdv~~FPr~p~r 550 (553)
+|||+|+|+|.+||||||+||++.+-
T Consensus 599 ldRlvmll~~~~~IrdviaFPKt~~g 624 (652)
T PLN02903 599 LDRLVMLLAGAKSIRDVIAFPKTTTA 624 (652)
T ss_pred HHHHHHHHcCCCchHheEecCCCCCc
Confidence 99999999999999999999998753
|
|
| >PRK00476 aspS aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-86 Score=730.24 Aligned_cols=430 Identities=30% Similarity=0.515 Sum_probs=337.7
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
+.|+++...++|++|+|+|||+++|.+| +++|++|||+++.||||++.. .++++++..|+.||+|.|+|+|..+
T Consensus 6 ~~~~~l~~~~~g~~V~l~GwV~~~R~~g-~l~Fi~LrD~~g~iQ~v~~~~-----~~~~~~~~~l~~es~V~V~G~v~~~ 79 (588)
T PRK00476 6 HYCGELRESHVGQTVTLCGWVHRRRDHG-GLIFIDLRDREGIVQVVFDPD-----AEAFEVAESLRSEYVIQVTGTVRAR 79 (588)
T ss_pred eeHHHhhHHhCCCEEEEEEEEEEEEeCC-CeEEEEEEeCCceEEEEEeCC-----HHHHHHHhCCCCCCEEEEEEEEEec
Confidence 5677888888999999999999999999 999999999999999999751 4567888999999999999999875
Q ss_pred C-Ccc--CCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHH
Q 008808 173 D-VEI--KGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIF 248 (553)
Q Consensus 173 ~-~~~--~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if 248 (553)
+ ..+ +..+|++||.++++.|||+|. + |+.+.+.. .++.++|+++||||||++.++++|
T Consensus 80 ~~~~~n~~~~~g~~El~~~~i~il~~a~-~lP~~~~~~~-----------------~~~~~~Rl~~R~LdlR~~~~~~~l 141 (588)
T PRK00476 80 PEGTVNPNLPTGEIEVLASELEVLNKSK-TLPFPIDDEE-----------------DVSEELRLKYRYLDLRRPEMQKNL 141 (588)
T ss_pred CCcccCccCCCCcEEEEEeEEEEEecCC-CCCCcccccc-----------------cCChhhhhhcceEeecCHHHHHHH
Confidence 4 222 234678999999999999998 6 88764321 257899999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeec---CCCCceecccChhhHhhhcccCCCceeEEEeceec
Q 008808 249 RIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLD---YKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFR 325 (553)
Q Consensus 249 ~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~---~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR 325 (553)
++||+|++++|+||.++||+||+||+|+.++++ ||.+|.|. +.+..+||+||||||||+||++|++||||||||||
T Consensus 142 ~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~e-ga~~f~v~~~~~~~~~~~L~qSpql~kq~l~~~g~~rvfqi~~~FR 220 (588)
T PRK00476 142 KLRSKVTSAIRNFLDDNGFLEIETPILTKSTPE-GARDYLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFR 220 (588)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCeeecCCCC-CCccceecccccCCceeecCCCHHHHHHHHHhcccCceEEEeceee
Confidence 999999999999999999999999999977666 57789876 67888899999999999999999999999999999
Q ss_pred CCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhh----------hHHHHHHhhhcCC----------
Q 008808 326 AEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNV----------CKKELEAVAKQYP---------- 385 (553)
Q Consensus 326 ~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~----------~~~~i~~~~~~~~---------- 385 (553)
||+++++||+ |||||||||+|. +|+|+|+++|+|++++++.+.+. |..-++..+..-|
T Consensus 221 ~E~~~~~r~~-EFt~le~e~af~-~~~dvm~~~E~li~~i~~~~~~~~~~~pf~r~ty~ea~~~yg~dkPDlR~~~eI~D 298 (588)
T PRK00476 221 DEDLRADRQP-EFTQIDIEMSFV-TQEDVMALMEGLIRHVFKEVLGVDLPTPFPRMTYAEAMRRYGSDKPDLRFGLELVD 298 (588)
T ss_pred cCCCCCCcCc-ccccceeeecCC-CHHHHHHHHHHHHHHHHHHHhCccCCCCceEEEHHHHHHHHCCCCCcccCCceehh
Confidence 9999898886 999999999998 69999999999999999876531 1111111111111
Q ss_pred ---------Ccc-------------ccCCC--CCc-ccCHHHHHHHHHHcCCC-----------C-CCC-----------
Q 008808 386 ---------FEP-------------LKYKP--KTL-RLTFEEGVQMLKDAGVE-----------I-DPL----------- 417 (553)
Q Consensus 386 ---------~~~-------------~~~~~--~~~-~i~~~ea~~ll~~~g~~-----------~-~~~----------- 417 (553)
+.. +.+.. ... +-.+++..++.+..|.. . .+.
T Consensus 299 VT~if~~s~f~vf~~~l~~gg~VkaI~vp~~~~~~~rk~id~L~e~AK~~gakGL~~i~~~~~~l~~~~akflsee~~~~ 378 (588)
T PRK00476 299 VTDLFKDSGFKVFAGAANDGGRVKAIRVPGGAAQLSRKQIDELTEFAKIYGAKGLAYIKVNEDGLKGPIAKFLSEEELAA 378 (588)
T ss_pred HHHHhccCCchhhhhhhccCCeEEEEEecCCCCccchhHHHHHHHHHHHcCCCceEEEEEcCCCCcCchhhcCCHHHHHH
Confidence 000 00000 000 11122222223322210 0 000
Q ss_pred ---------CC-------CCcHHHHHHhHHHHH---Hh------CCccEEEeccCC------------cCCCCCCcccCC
Q 008808 418 ---------GD-------LNTESERKLGQLVLE---KY------GTEFYILHRYPL------------AVRPFYTMPCHD 460 (553)
Q Consensus 418 ---------~d-------l~~~~e~~l~~~v~~---~~------~~~~~ii~~~P~------------~~~pfy~~~~~~ 460 (553)
+| -.......||.+... .+ ...|.||+|||. .++|| |||+++
T Consensus 379 L~e~l~~k~GDll~~~A~~~~~v~~aLG~LR~~L~~~~~~~~~~~~~f~Wv~dfPlf~~~~~~~~~~~~HhpF-T~p~~~ 457 (588)
T PRK00476 379 LLERTGAKDGDLIFFGADKAKVVNDALGALRLKLGKELGLIDEDKFAFLWVVDFPMFEYDEEEGRWVAAHHPF-TMPKDE 457 (588)
T ss_pred HHHHhCCCCCCEEEEECCchHHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCCCCccCCCCeeeeecCCC-CCcCcc
Confidence 01 000122345544321 11 134789999995 47999 899765
Q ss_pred C--------C--cceeEEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCChh----cHHHHHHHhhcCCCCcceeeecHH
Q 008808 461 N--------S--LYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVK----TISTYIDSFRYGAPPHGGFGVGLE 526 (553)
Q Consensus 461 ~--------~--~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~----~~~~yl~a~~~G~pP~~G~GiGid 526 (553)
| | ..+++|||++||.||+|||+|+||++.|+++|+..|++++ .+.+||+||+||+|||||||+|+|
T Consensus 458 d~~~l~~~~p~~~~a~~~dlv~ng~E~~~gs~ri~~~~~q~~~~~~~~~~~~~~~~~~~~~~~a~~~g~pph~g~~~G~d 537 (588)
T PRK00476 458 DLDELETTDPGKARAYAYDLVLNGYELGGGSIRIHRPEIQEKVFEILGISEEEAEEKFGFLLDALKYGAPPHGGIAFGLD 537 (588)
T ss_pred ChhHhhcCCHHHhhhheeeeEEeeeeeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCcceeccHH
Confidence 3 3 3579999999999999999999999999999999999876 578999999999999999999999
Q ss_pred HHHHHHcCCCCccccccccCCCCC
Q 008808 527 RVVMLFCGLNNIRKTSLYPRDPLR 550 (553)
Q Consensus 527 RLvm~l~g~~nIrdv~~FPr~p~r 550 (553)
||+|+|+|.+||||||+||++.+-
T Consensus 538 r~~~~~~~~~~irdvi~fp~~~~g 561 (588)
T PRK00476 538 RLVMLLAGADSIRDVIAFPKTQSA 561 (588)
T ss_pred HHHHHHcCCccHHheeeccCCCCc
Confidence 999999999999999999998763
|
|
| >PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-85 Score=728.17 Aligned_cols=446 Identities=26% Similarity=0.411 Sum_probs=334.7
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
.+.|++|+..+.|++|+|+|||+++|.+| +++|++|||+++.||||++.+. .+.++++++..|+.||+|.|+|+|..
T Consensus 6 ~~~cg~l~~~~~g~~V~l~GWV~~~R~~G-~l~FidLRD~~G~iQvV~~~~~--~~~~~~~~~~~L~~EsvV~V~G~v~~ 82 (706)
T PRK12820 6 RSFCGHLSLDDTGREVCLAGWVDAFRDHG-ELLFIHLRDRNGFIQAVFSPEA--APADVYELAASLRAEFCVALQGEVQK 82 (706)
T ss_pred ccccccCChhhCCCEEEEEEEEEEEEcCC-CcEEEEEEeCCccEEEEEeCCc--CCHHHHHHHhcCCCCCEEEEEeEEec
Confidence 36799999999999999999999999999 8999999999999999998652 45678888899999999999999988
Q ss_pred CCCcc---CCCceeEEEEEeEEEEeecCCCCCCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHH
Q 008808 172 PDVEI---KGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIF 248 (553)
Q Consensus 172 ~~~~~---~~~t~~~Ei~v~~i~~ls~~~~~P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if 248 (553)
++.+. +..|+++||.++++.||++|...|+.+.+...+.. +.+ .....++.++|++|||||||++.++++|
T Consensus 83 r~~~~~n~~~~tg~iEl~~~~i~iL~~a~~lP~~i~~~~~~~~----~~~--~~~~~~~e~~Rl~~RyLDLR~~~~~~~l 156 (706)
T PRK12820 83 RLEETENPHIETGDIEVFVRELSILAASEALPFAISDKAMTAG----AGS--AGADAVNEDLRLQYRYLDIRRPAMQDHL 156 (706)
T ss_pred cCccccCCCCCCCcEEEEeeEEEEEecCCCCCCCCcccccccc----ccc--ccccccCHhhhhhCceeecCCHHHHHHH
Confidence 54222 23457899999999999999644776654321000 000 1122367899999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee--cCCC-CceecccChhhHhhhcccCCCceeEEEeceec
Q 008808 249 RIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKG-QSACLAQSPQLHKQMSICGDFGRVFETGPVFR 325 (553)
Q Consensus 249 ~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~-~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR 325 (553)
++||+|++.||+||.++||+||+||+|+.++++| |.+|.+ .++. ..++|+||||||||+||++|++||||||||||
T Consensus 157 r~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~eG-Ar~~~~p~~~~~~~~y~L~qSPQlykq~lm~~G~~rvfqI~~~FR 235 (706)
T PRK12820 157 AKRHRIIKCARDFLDSRGFLEIETPILTKSTPEG-ARDYLVPSRIHPKEFYALPQSPQLFKQLLMIAGFERYFQLARCFR 235 (706)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEeCCccccCCCCC-CcceEEeeecCCCcceecCCCHHHHHHHHHhccCCcEEEEechhc
Confidence 9999999999999999999999999999876665 666543 3344 44569999999999999999999999999999
Q ss_pred CCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhh---------hhHHHHHHhhhcCCC----------
Q 008808 326 AEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNN---------VCKKELEAVAKQYPF---------- 386 (553)
Q Consensus 326 ~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~---------~~~~~i~~~~~~~~~---------- 386 (553)
||+++++|| ||||||||||+|. +++|+|+++|+|+.++++.... .|..-++..+..-|-
T Consensus 236 ~E~~~t~r~-pEFT~LE~E~af~-d~~dvm~l~E~li~~v~~~~~~~~~~pf~r~ty~eA~~~yG~DKPDlR~~~~l~d~ 313 (706)
T PRK12820 236 DEDLRPNRQ-PEFTQLDIEASFI-DEEFIFELIEELTARMFAIGGIALPRPFPRMPYAEAMDTTGSDRPDLRFDLKFADA 313 (706)
T ss_pred CCCCCCCcC-ccccccceeeccC-CHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEHHHHHHHhCCCCCccccCcEEEEH
Confidence 999988777 9999999999998 7999999999999999852210 022222222111110
Q ss_pred ---------cc-------------ccCCCCCcccC---HHHHH--HHHHHcCCC------C------CCCCC-CC-----
Q 008808 387 ---------EP-------------LKYKPKTLRLT---FEEGV--QMLKDAGVE------I------DPLGD-LN----- 421 (553)
Q Consensus 387 ---------~~-------------~~~~~~~~~i~---~~ea~--~ll~~~g~~------~------~~~~d-l~----- 421 (553)
.. +.+...-..++ ..+++ ++.+..|.. . .+... ++
T Consensus 314 ~~~~~~~~f~~f~~~~~~~g~v~~i~~~~~~~~~s~~~~~~~~~~~~~~~~g~~gl~~~~~~~~~~~~~~~~~~~~~~~~ 393 (706)
T PRK12820 314 TDIFENTRYGIFKQILQRGGRIKGINIKGQSEKLSKNVLQNEYAKEIAPSFGAKGMTWMRAEAGGLDSNIVQFFSADEKE 393 (706)
T ss_pred HHHhccCCchhhhhhhccCCeEEEEEeCCCccccCHHHHHHHHHHHHHHHcCCCceEEEEECCCCcCCchhccCCHHHHH
Confidence 00 00000000011 11101 111222110 0 00000 00
Q ss_pred ----------------------cHHHHHHhHHHH---HHhC------CccEEEeccCC-----------cCCCCCCcccC
Q 008808 422 ----------------------TESERKLGQLVL---EKYG------TEFYILHRYPL-----------AVRPFYTMPCH 459 (553)
Q Consensus 422 ----------------------~~~e~~l~~~v~---~~~~------~~~~ii~~~P~-----------~~~pfy~~~~~ 459 (553)
......||.+-. +.++ ..|.||+|||. .++|| |||++
T Consensus 394 ~l~~~~~~~~gd~~~~~a~~~~~~~~~~LG~lR~~l~~~~~l~~~~~~~flWV~dFPlfe~~~e~~~~a~HHPF-T~p~~ 472 (706)
T PRK12820 394 ALKRRFHAEDGDVIIMIADASCAIVLSALGQLRLHLADRLGLIPEGVFHPLWITDFPLFEATDDGGVTSSHHPF-TAPDR 472 (706)
T ss_pred HHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHHHHHcCCCCCCCceEEEEEeCCcccCCCCCCeeeeeCCC-CCcCc
Confidence 012234554321 1121 23679999997 46999 89976
Q ss_pred CC--------C--cceeEEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCChhc----HHHHHHHhhcCCCCcceeeecH
Q 008808 460 DN--------S--LYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKT----ISTYIDSFRYGAPPHGGFGVGL 525 (553)
Q Consensus 460 ~~--------~--~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~----~~~yl~a~~~G~pP~~G~GiGi 525 (553)
+| | -.+.+|||++||.||+|||+|+||++.|++.|+..|++++. +.+||+||+||+|||||+|+|+
T Consensus 473 ~d~~~l~~~~p~~~~~~~YDLV~nG~E~ggGs~Rih~~~~q~~~f~~lg~~~~~~~~~Fgf~l~a~~~G~pphgG~a~G~ 552 (706)
T PRK12820 473 EDFDPGDIEELLDLRSRAYDLVVNGEELGGGSIRINDKDIQLRIFAALGLSEEDIEDKFGFFLRAFDFAAPPHGGIALGL 552 (706)
T ss_pred cChhhhccCChHHhhhheeeEEecceeeccceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCCceeccH
Confidence 53 2 13679999999999999999999999999999999998754 5689999999999999999999
Q ss_pred HHHHHHHcCCCCccccccccCCCCC
Q 008808 526 ERVVMLFCGLNNIRKTSLYPRDPLR 550 (553)
Q Consensus 526 dRLvm~l~g~~nIrdv~~FPr~p~r 550 (553)
|||+|+|+|.+||||||+||++.+-
T Consensus 553 dRlvm~l~~~~sirdviaFPK~~~g 577 (706)
T PRK12820 553 DRVVSMILQTPSIREVIAFPKNRSA 577 (706)
T ss_pred HHHHHHHcCCccHHHhcccCCCCCC
Confidence 9999999999999999999998653
|
|
| >cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-84 Score=673.45 Aligned_cols=318 Identities=46% Similarity=0.763 Sum_probs=295.4
Q ss_pred CCccccccccceeeccHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhH
Q 008808 226 VNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLH 305 (553)
Q Consensus 226 ~~~e~Rl~~R~LdLr~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~ 305 (553)
++.++|+++||||||++..++++++||.|++.+|+||.++||+||+||+|+++++++++.+|.++|||.++||+||||||
T Consensus 2 ~~~~~~~~~r~l~lr~~~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e~~~~~f~~~~~~~~~yL~~Spql~ 81 (322)
T cd00776 2 ANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKVSYFGKPAYLAQSPQLY 81 (322)
T ss_pred CChHhhhhCceeeeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCCccCCccccccCCCcceecCCHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCC
Q 008808 306 KQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYP 385 (553)
Q Consensus 306 lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~ 385 (553)
||++++| ++|||+||||||||+++++|||||||||||||+|+++|+|+|+++|+||++++..+.+.++.++..+. ...
T Consensus 82 lk~l~~~-~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~~l~~~~~~~~~~~~-~~~ 159 (322)
T cd00776 82 KEMLIAA-LERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVN-QLN 159 (322)
T ss_pred HHHHHHh-hhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHHHHHHHHHHHHHHHHhccHHHHhhhh-ccC
Confidence 9999988 99999999999999988899999999999999998789999999999999999999998888776541 222
Q ss_pred CccccCCCCCcccCHHHHHHHHHHcCC--CCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCc
Q 008808 386 FEPLKYKPKTLRLTFEEGVQMLKDAGV--EIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSL 463 (553)
Q Consensus 386 ~~~~~~~~~~~~i~~~ea~~ll~~~g~--~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~ 463 (553)
.....+..||++++|.||++++++.|. +..++.++++++|+.|+..++ ..++||+|||.+++|||+++++++|+
T Consensus 160 ~~~~~~~~~~~rit~~eA~~~l~~~~~~~~~~~~~~l~~~~e~~l~~~~~----~~p~fi~~~P~~~~pfy~~~~~~~~~ 235 (322)
T cd00776 160 RELLKPLEPFPRITYDEAIELLREKGVEEEVKWGEDLSTEHERLLGEIVK----GDPVFVTDYPKEIKPFYMKPDDDNPE 235 (322)
T ss_pred cccccCCCCceEEEHHHHHHHHHHcCCCCCCCccchhcHHHHHHHHHHhC----CCcEEEECCccccCCceeeecCCCCC
Confidence 223345578999999999999999887 667777899999999987664 45678899999999999999999999
Q ss_pred ceeEEEEEeCC-EEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccc
Q 008808 464 YSNSFDVFIRG-EEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTS 542 (553)
Q Consensus 464 ~~~~fdl~~~G-~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~ 542 (553)
+++|||||++| +||+|||+|+|||++|++|++++|+++..++|||+|+++|+|||||||||||||+|++||++|||||+
T Consensus 236 ~~~~fdl~~~G~~El~~g~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidRL~m~~~g~~~Irdv~ 315 (322)
T cd00776 236 TVESFDLLMPGVGEIVGGSQRIHDYDELEERIKEHGLDPESFEWYLDLRKYGMPPHGGFGLGLERLVMWLLGLDNIREAI 315 (322)
T ss_pred eeEEEEEEcCCCeEEeeceeecCCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCCceeeEhHHHHHHHHcCCCchheEe
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCC
Q 008808 543 LYPRDPL 549 (553)
Q Consensus 543 ~FPr~p~ 549 (553)
+|||+|+
T Consensus 316 ~FPr~~~ 322 (322)
T cd00776 316 LFPRDPK 322 (322)
T ss_pred ecCCCCC
Confidence 9999985
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-82 Score=632.39 Aligned_cols=428 Identities=27% Similarity=0.433 Sum_probs=370.6
Q ss_pred cceEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEE
Q 008808 90 REWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVV 169 (553)
Q Consensus 90 ~~~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v 169 (553)
.+-.+|.+. ..+.|+.|+|.||||+.|.+. +|+|++|||+++.||||++.+.+. + .+ +-.|..+|.|.|.|++
T Consensus 110 ak~iki~~s-~~~r~qrVkv~gWVhrlR~qk-~l~FivLrdg~gflqCVl~~kl~~-~---yd-~~~Ls~essv~vYG~i 182 (545)
T KOG0555|consen 110 AKKIKIYDS-TENRGQRVKVFGWVHRLRRQK-SLIFIVLRDGTGFLQCVLSDKLCQ-S---YD-ALTLSTESSVTVYGTI 182 (545)
T ss_pred hheeeeccc-ccccCceEEeehhhHhhhhcC-ceEEEEEecCCceEEEEEcchhhh-h---hc-cccccccceEEEEEEE
Confidence 445666654 468899999999999999995 999999999999999999976431 1 11 1249999999999999
Q ss_pred ecCCCccCCCceeEEEEEeEEEEeecCCCCCCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHH
Q 008808 170 SVPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (553)
Q Consensus 170 ~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~ 249 (553)
++.+..+ ++.+..||.|.-+.|++.|...-+.. ... .-++.+..|+||||-+|....+.+++
T Consensus 183 ~~~p~GK-~apgghEl~vdy~Eiig~Apag~~~n---~ln--------------e~s~~~~~LdnrHl~iRge~~s~vLK 244 (545)
T KOG0555|consen 183 KKLPEGK-SAPGGHELNVDYWEIIGLAPAGGFDN---PLN--------------EESDVDVLLDNRHLVIRGENASKVLK 244 (545)
T ss_pred ecCcCCC-CCCCCceEEeeeeeeecccCCCcccc---ccc--------------ccCCcceEeccceeEEechhHHHHHH
Confidence 9887653 45678999999999998874331110 000 01467889999999999999999999
Q ss_pred HHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCC
Q 008808 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDS 329 (553)
Q Consensus 250 ~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~ 329 (553)
+|+.+++.+|+++.++|+.||..|.|+....|||++.|+++|+|.++||+||.||||+.++.+ +++||+|.++||+|.|
T Consensus 245 ~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQVEGGsTLFkldYyGEeAyLTQSSQLYLEtclpA-lgdvy~I~~SyRAEkS 323 (545)
T KOG0555|consen 245 ARAALLRAMRDHYFERGYTEVTPPTMVQTQVEGGSTLFKLDYYGEEAYLTQSSQLYLETCLPA-LGDVYCIQQSYRAEKS 323 (545)
T ss_pred HHHHHHHHHHHHHHhcCceecCCCceEEEEecCcceEEeecccCchhhccchhHHHHHHhhhh-cCceeEecHhhhhhhh
Confidence 999999999999999999999999999888999999999999999999999999999999766 9999999999999999
Q ss_pred CCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhhhcCCCccccCCCCCcccCHHHHHHHHH
Q 008808 330 YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKK-ELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLK 408 (553)
Q Consensus 330 ~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~ 408 (553)
+|+|||.|||++|+|++|. ++.++|+-+|.|+...+..+.+.-.. .++.++..+.. -..||.|+.|+|||+.|+
T Consensus 324 rTRRHLsEytHVEaE~afl-tfd~ll~~iE~lvc~~vdr~l~dp~~~li~~lnP~f~~----P~~PFkRm~Y~dAI~wLk 398 (545)
T KOG0555|consen 324 RTRRHLSEYTHVEAECAFL-TFDDLLDRIEALVCDSVDRLLEDPIAPLIKQLNPDFKA----PKRPFKRMNYSDAIEWLK 398 (545)
T ss_pred hhhhhhhhheeeeeecccc-cHHHHHHHHHHHHHHHHHHHHhChhhhhHHHhCCCCCC----CCCchhcCCHHHHHHHHH
Confidence 9999999999999999998 69999999999999999988764322 33333322211 124789999999999999
Q ss_pred HcCCCC------CCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCC-EEEeece
Q 008808 409 DAGVEI------DPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRG-EEIISGA 481 (553)
Q Consensus 409 ~~g~~~------~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G-~Ei~~G~ 481 (553)
++++.- ..++|+....||.+...| +. ++++++||..+++||++.+.+||++|+|.|++++| +||++|+
T Consensus 399 e~~vk~edg~~fefGdDI~eAaER~mtdtI----g~-PIfLtrFpveiKsFYM~rc~dd~~lTESvD~LmPnVGEIvGGS 473 (545)
T KOG0555|consen 399 EHDVKKEDGTDFEFGDDIPEAAERKMTDTI----GV-PIFLTRFPVEIKSFYMKRCEDDPRLTESVDVLMPNVGEIVGGS 473 (545)
T ss_pred hcCCcCccCcccccccchhhHHHHhhhhhc----CC-ceEEeeccccccceeeecccCccccceeeeeecCCccccccce
Confidence 997644 445778888898887544 44 45678999999999999999999999999999999 8999999
Q ss_pred eccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 482 QRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 482 ~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
+|+.|.++|.+.|+..|+|+.+|.||++..+||.-||||+|||+||++||||+-.+||||++|||-.+|++|
T Consensus 474 MRi~d~eeLlagfkRegId~~pYYWy~DqrkyGt~pHGGyGLGlERfL~wL~~r~~vre~cLyPRfv~RC~P 545 (545)
T KOG0555|consen 474 MRIDDSEELLAGFKREGIDPDPYYWYTDQRKYGTCPHGGYGLGLERFLAWLCDRYHVREVCLYPRFVGRCTP 545 (545)
T ss_pred eeeccHHHHHHHHhhcCCCCCCceEEeeccccccCCCCcccccHHHHHHHHhcccchhheeecchhhccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
|
|
| >PRK06462 asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-80 Score=642.33 Aligned_cols=317 Identities=29% Similarity=0.450 Sum_probs=285.4
Q ss_pred CCccccccccceeeccHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCC---C----ccceeecCCCCceec
Q 008808 226 VNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG---G----SAVFRLDYKGQSACL 298 (553)
Q Consensus 226 ~~~e~Rl~~R~LdLr~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~eg---g----a~~F~v~~~~~~~~L 298 (553)
.+.++|++||++|+|++..+++|++||+|++.+|+||.++||+||+||+|+++.+++ | +..|.++|||+++||
T Consensus 8 ~~~~~~~~~r~~~lr~~~~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~yL 87 (335)
T PRK06462 8 KEYEEFLRMSWKHISSEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDFYGVEYYL 87 (335)
T ss_pred cchhhhhhhHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCccccccccCCCceee
Confidence 478999999999999999999999999999999999999999999999998765542 2 335677899999999
Q ss_pred ccChhhHhhhcccCCCceeEEEeceecCCCCCC--CCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 008808 299 AQSPQLHKQMSICGDFGRVFETGPVFRAEDSYT--HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKE 376 (553)
Q Consensus 299 ~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~t--~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~ 376 (553)
++|||||||++ ++|++||||||||||||++++ +|||||||||||||+|. ||+|+|+++|+|+++++..+.++++.+
T Consensus 88 ~~Spql~k~ll-~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~-d~~dlm~~~e~lv~~i~~~~~~~~~~~ 165 (335)
T PRK06462 88 ADSMILHKQLA-LRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGA-DLDEVMDLIEDLIKYLVKELLEEHEDE 165 (335)
T ss_pred ccCHHHHHHHH-HhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcC-CHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999998865 566999999999999999976 79999999999999997 799999999999999999999999888
Q ss_pred HHHhhhcCCCccccCCCCCcccCHHHHHHHHHHcCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCc
Q 008808 377 LEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTM 456 (553)
Q Consensus 377 i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~ 456 (553)
+..++...+ .+..||+||||.||+++|++.|++..+..++++..|+.|+.++ +.| +||+|||.+++|||++
T Consensus 166 i~~~~~~~~----~~~~p~~rit~~eA~~~l~~~~~~~~~~~~l~~~~E~~l~~~~----~~p-~fi~~yP~~~~pfy~~ 236 (335)
T PRK06462 166 LEFFGRDLP----HLKRPFKRITHKEAVEILNEEGCRGIDLEELGSEGEKSLSEHF----EEP-FWIIDIPKGSREFYDR 236 (335)
T ss_pred HHhcCCccc----cCCCCCeEEEHHHHHHHHHhcCCCcchHHHHhHHHHHHHHHHh----CCC-EEEECCChhhCCcccc
Confidence 776643322 2346899999999999999999877777778888898887654 455 5678999999999999
Q ss_pred ccCCCCcceeEEEEEe--CCEEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcC
Q 008808 457 PCHDNSLYSNSFDVFI--RGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCG 534 (553)
Q Consensus 457 ~~~~~~~~~~~fdl~~--~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g 534 (553)
+++++|++++|||||+ +++||++|++|+|+++++.++++++|+++..++|||+|++||+|||||||||||||+|++||
T Consensus 237 ~~~~~~~~~~rFdL~~~~g~gEl~~g~er~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~glGidRLvm~~~g 316 (335)
T PRK06462 237 EDPERPGVLRNYDLLLPEGYGEAVSGGEREYEYEEIVERIREHGVDPEKYKWYLEMAKEGPLPSAGFGIGVERLTRYICG 316 (335)
T ss_pred cCCCCCCEEEEEEEEeeCCCcEEeeeEEEecCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCCCeEEEcHHHHHHHHcC
Confidence 8899999999999999 45899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccCCCCCCCC
Q 008808 535 LNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 535 ~~nIrdv~~FPr~p~rl~p 553 (553)
++|||||++|||+|++..+
T Consensus 317 ~~~Irdv~~FPr~~g~~~~ 335 (335)
T PRK06462 317 LRHIREVQPFPRVPGIVAL 335 (335)
T ss_pred CCchheeeeccCCCCCCCC
Confidence 9999999999999998654
|
|
| >PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-80 Score=647.87 Aligned_cols=313 Identities=40% Similarity=0.663 Sum_probs=260.9
Q ss_pred CccccccccceeeccHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeec-----CCCCceecccC
Q 008808 227 NQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLD-----YKGQSACLAQS 301 (553)
Q Consensus 227 ~~e~Rl~~R~LdLr~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~-----~~~~~~~L~~S 301 (553)
++|+|++|||||+|++..+++|++||.|+++||+||.++||+||+||+|++++++||+++|.|+ |+|.++||+||
T Consensus 1 ~~e~~~~~r~l~~r~~~~~~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~S 80 (335)
T PF00152_consen 1 DEETRLDNRHLDLRTPAMSSILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQS 80 (335)
T ss_dssp -HHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-SS
T ss_pred ChhhhhhccceeccCcHHHHHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccchhhhcccceecCcC
Confidence 4689999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hhhHhhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhh
Q 008808 302 PQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVA 381 (553)
Q Consensus 302 Pql~lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~ 381 (553)
||||||+++++|++||||||||||||+++|.|||||||||||||+|. +++++|+++|+||+++++.+.++.+. . .+
T Consensus 81 pql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~-~~~~lm~~~e~li~~i~~~~~~~~~~-~-~~- 156 (335)
T PF00152_consen 81 PQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFA-DYDDLMDLIEELIKYIFKELLENAKE-L-SL- 156 (335)
T ss_dssp SHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETS-SHHHHHHHHHHHHHHHHHHHHHHHHH-H-HT-
T ss_pred hHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccC-cHHHhHHHHHHHHHHHHHHHhccCcc-c-cc-
Confidence 99999999999999999999999999998999999999999999998 68999999999999999998765221 1 11
Q ss_pred hcCCCccccCCCCCcccCHHHHHHHHHHcCCCCCCCC---------CCCcHHHHHHhHHHHH----HhCCccEEEeccCC
Q 008808 382 KQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLG---------DLNTESERKLGQLVLE----KYGTEFYILHRYPL 448 (553)
Q Consensus 382 ~~~~~~~~~~~~~~~~i~~~ea~~ll~~~g~~~~~~~---------dl~~~~e~~l~~~v~~----~~~~~~~ii~~~P~ 448 (553)
.+++..+|++++|.+|++.+...+.+..... +......+.|+..+++ ....+++||+|||.
T Consensus 157 ------~~~~~~~f~ri~~~ea~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~e~~L~~~~~~~p~fI~~~P~ 230 (335)
T PF00152_consen 157 ------NIDLPKPFPRITYEEAFEIYGGDKPDLRFDEELDDLAEIEELEFEVGRLLSEEVEPYLVEKYFTDPVFITDYPA 230 (335)
T ss_dssp ------CEESSSS-EEEEHHHHHHHHHHTTTTTTTCHHHHHHHHHHHTTHHCHHHHHHHHHHHHHHHHSSSEEEEEEEBG
T ss_pred ------cccccCCceEeeehHHHHHhhcccccchhHHHHHHHHHHhcccchHHHHHHHHHHHHhhhcccCCcEEEEeccc
Confidence 3445567999999999999888765544311 0000112344444444 34577888999999
Q ss_pred cCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCChhc----HHHHHHHhhcCCCCcceeeec
Q 008808 449 AVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKT----ISTYIDSFRYGAPPHGGFGVG 524 (553)
Q Consensus 449 ~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~----~~~yl~a~~~G~pP~~G~GiG 524 (553)
.++|||++...+++++++|||||++|+||||||+|+|||++|++||++.|++... ++|||+|+++|+|||||||||
T Consensus 231 ~~~pf~~~~~~~~~~~~~~fdl~~~g~Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~glG 310 (335)
T PF00152_consen 231 EQSPFYKPPNDDDPGVAERFDLYIPGGEIANGSQREHDPEELRERFEEQGIDPEEEMPIDEWYLEALKYGMPPHGGFGLG 310 (335)
T ss_dssp GGSTTTBBBSSSTTTBBSEEEEEETTEEEEEEEEB--SHHHHHHHHHHTTHHGGGSHHHGHHHHHHHHTT--SEEEEEEE
T ss_pred ccCcccccccccccccccceeEEEeCEEEehHHhhhhHHHHHHHHhhhcccccccccchhHhHHHhhhccCcccCcceeh
Confidence 9999987766656699999999999999999999999999999999999987766 899999999999999999999
Q ss_pred HHHHHHHHcCCCCccccccccCCCC
Q 008808 525 LERVVMLFCGLNNIRKTSLYPRDPL 549 (553)
Q Consensus 525 idRLvm~l~g~~nIrdv~~FPr~p~ 549 (553)
||||+|++||++|||||++|||+.+
T Consensus 311 ~eRLvm~l~g~~~Irdv~~FPr~~~ 335 (335)
T PF00152_consen 311 LERLVMLLLGLKNIRDVIPFPRDRQ 335 (335)
T ss_dssp HHHHHHHHHT-SSGGGGSSS-CBT-
T ss_pred HHHHHHHHcCCCcHHheecCCCCCC
Confidence 9999999999999999999999864
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B .... |
| >KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-77 Score=604.79 Aligned_cols=409 Identities=28% Similarity=0.477 Sum_probs=356.5
Q ss_pred ccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCC--eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCc
Q 008808 98 LNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERV--STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE 175 (553)
Q Consensus 98 l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~--~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~ 175 (553)
+.....|++++|.|||.++|.+| |.+|++|.||+ ..+|||++.. ..+.+..|++|.|+|.+..+
T Consensus 14 ~~~~~~g~~~~i~GWvKsvr~~~-~~~Fl~i~DGs~~~~lQvVv~~~----------~~q~la~Gt~i~~~g~l~~~--- 79 (446)
T KOG0554|consen 14 LGHPRAGDTISIGGWVKSVRKLK-KVTFLDINDGSCPSPLQVVVDSE----------QSQLLATGTCISAEGVLKVS--- 79 (446)
T ss_pred ccCCCCCCceeecchhhhccccc-ceEEEEecCCCCCcceEEEechH----------HhhhccccceEEEEeeEEec---
Confidence 34567899999999999999999 89999999998 4899999873 34679999999999999877
Q ss_pred cCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHHHHHH
Q 008808 176 IKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQV 254 (553)
Q Consensus 176 ~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~Rs~i 254 (553)
++..+++|+.+.+|.+++.+.+. |++.+.. .++.--+.-||..|+....+++|+||.+
T Consensus 80 -~~~~q~iel~~eki~~vG~v~~~ypl~Kk~l--------------------t~e~LR~~~HLR~Rt~~~~av~RvRs~~ 138 (446)
T KOG0554|consen 80 -KGAKQQIELNAEKIKVVGTVDESYPLQKKKL--------------------TPEMLRDKLHLRSRTAKVGAVLRVRSAL 138 (446)
T ss_pred -cchheeeeeeeeEEEEEeecCCCCCCccccC--------------------CHHHHhhcccccchhhHHHHHHHHHHHH
Confidence 46678899999999999999888 8765433 2344446778999999999999999999
Q ss_pred HHHHHHHhHhCCcEEEecceeeccCCCCCccceee--------cCCCCceecccChhhHhhhcccCCCceeEEEeceecC
Q 008808 255 GNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--------DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRA 326 (553)
Q Consensus 255 ~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--------~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~ 326 (553)
..+++.||.+++|++|+||+|+.+.|||+.+.|.| +|||+++||++|.|||++. ++.++.|||.+||+|||
T Consensus 139 ~~a~h~ffq~~~F~~i~tPiiTt~DCEGaGE~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE~-~a~~LsrvyTfgP~FRA 217 (446)
T KOG0554|consen 139 AFATHSFFQSHDFTYINTPIITTNDCEGAGEVFQVTTLTDYSKDFFGRPAFLTVSGQLHLEA-MACALSRVYTFGPTFRA 217 (446)
T ss_pred HHHHHHHHHHcCceEecCcEeeccCCCCCcceEEEEecCcccccccCCceEEEEeceehHHH-HHhhhcceEeeccceec
Confidence 99999999999999999999999999999999976 4799999999999999995 57789999999999999
Q ss_pred CCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCC-C--ccc--cCCCCCcccCHH
Q 008808 327 EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYP-F--EPL--KYKPKTLRLTFE 401 (553)
Q Consensus 327 E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~-~--~~~--~~~~~~~~i~~~ 401 (553)
|+|+++|||.||||||.|++|++.++|+|+++|.+++++++.+.++|....+...++.. . .++ ....+|.+++|.
T Consensus 218 EnS~tsRHLAEFwMlEaE~AF~~sl~d~m~~~e~~~K~mik~llek~~edmel~~k~~~~~~~~rl~~~~~~~~~~~tYt 297 (446)
T KOG0554|consen 218 ENSHTSRHLAEFWMLEAELAFAESLDDLMSCAEAYIKHMIKYLLEKCIEDMELMHKNEDPGSIDRLELVAKENLLRITYT 297 (446)
T ss_pred ccCCchhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhheeccccCCCccchhhhhccchhhhccHH
Confidence 99999999999999999999997799999999999999999999998877765433221 1 111 122357899999
Q ss_pred HHHHHHHHcCC-----CCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCC-E
Q 008808 402 EGVQMLKDAGV-----EIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRG-E 475 (553)
Q Consensus 402 ea~~ll~~~g~-----~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G-~ 475 (553)
||+++|++++. ...|+.||++++|+.|.. +.++.| +||+|||..++|||++.+.+++ ...+|||+|+| +
T Consensus 298 eAie~L~~a~t~~fk~~~kwG~~l~~ehe~yL~~---~~~~~P-VfV~dYP~~iKpFYMr~n~~~~-tVaa~DlLVP~vG 372 (446)
T KOG0554|consen 298 EAIELLQKAVTKKFKTPPKWGIDLSTEHEKYLVE---ECFKKP-VFVTDYPKGIKPFYMRLNDDGK-TVAAFDLLVPGVG 372 (446)
T ss_pred HHHHHHHHhcccccccCcccccccchhhHHHHHH---HhcCCC-EEEEeccccccceEEEecCCCC-eeEEEEeecccch
Confidence 99999998762 457788999999999853 445455 5678999999999976655444 77899999999 8
Q ss_pred EEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCC
Q 008808 476 EIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRI 551 (553)
Q Consensus 476 Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl 551 (553)
||++|++|+.+ .+|+++.|..++.++|||+.++||.+||||||||+||++.+++|.+||||||+|||.|+..
T Consensus 373 EliGGSlREe~----~~~l~e~g~~~~~~eWYldLRryG~vphgGFGlGfER~lq~~tG~~nIkd~IPFpR~~~s~ 444 (446)
T KOG0554|consen 373 ELIGGSLREER----KARLKERGLTREELEWYLDLRRYGSVPHGGFGLGFERMLQYLTGNDNIKDVIPFPRYPGSA 444 (446)
T ss_pred hhcCcccchhh----HHHHHhcCCCccccceehhhhhcCCCCCCcccccHHHHHHHHhCCcchhhceecCCCcccc
Confidence 99999999999 6777889999999999999999999999999999999999999999999999999999865
|
|
| >TIGR00462 genX lysyl-tRNA synthetase-like protein GenX | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-74 Score=593.24 Aligned_cols=281 Identities=21% Similarity=0.354 Sum_probs=247.0
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeecc-CCCCCccceeecCCC-----CceecccChhhHhhhcccCCCceeEEEe
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAG-SSEGGSAVFRLDYKG-----QSACLAQSPQLHKQMSICGDFGRVFETG 321 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~-~~egga~~F~v~~~~-----~~~~L~~SPql~lk~li~~g~~rVfeIg 321 (553)
+++||.|++.+|+||.++||+||+||+|+++ ++++|+++|+++||+ +++||+||||||||+++++|++||||||
T Consensus 1 l~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfeig 80 (304)
T TIGR00462 1 LRARARLLAAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQIC 80 (304)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEEc
Confidence 4789999999999999999999999999987 588899999999876 6999999999999999999999999999
Q ss_pred ceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCC--------
Q 008808 322 PVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKP-------- 393 (553)
Q Consensus 322 ~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~-------- 393 (553)
||||||++ ++||||||||||||++|. ||+|+|+++|+|+++++..+. .|+..+.+.+
T Consensus 81 p~FRaE~~-~~rHl~EFtmLE~e~~~~-d~~d~m~~~e~li~~i~~~~~-------------~~~~~it~~ea~~~~~~~ 145 (304)
T TIGR00462 81 KVFRNGER-GRRHNPEFTMLEWYRPGF-DYHDLMDEVEALLQELLGDPF-------------APWERLSYQEAFLRYAGI 145 (304)
T ss_pred CceeCCCC-CCCcccHHHhHHHHHHcC-CHHHHHHHHHHHHHHHHHhcC-------------CCcEEEEHHHHHHHHhCC
Confidence 99999998 689999999999999997 799999999999999987521 0111111100
Q ss_pred CCcccCHHHHHHHHHHcCCCCCCCCCCCcHHHHHHhHHHHHHhCCc-cEEEeccCCcCCCCCCcccCCCCcceeEEEEEe
Q 008808 394 KTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTE-FYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFI 472 (553)
Q Consensus 394 ~~~~i~~~ea~~ll~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~-~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~ 472 (553)
++...+..++..++++.|+++++..|+++.+|+.|+++|+++++.+ ++||+|||..++||| +++++||++++|||||+
T Consensus 146 ~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~e~~l~~~ie~~~~~~~p~fi~~yP~~~~~~~-~~~~~~~~~~~rfdl~~ 224 (304)
T TIGR00462 146 DPLTASLDELAAAAAAHGVRASEEDDRDDLLDLLFSEKVEPHLGFGRPTFLYDYPASQAALA-RISPDDPRVAERFELYI 224 (304)
T ss_pred CcccCCHHHHHHHHHHcCCCCCCCCChhHHHHHHHHHHHHHhcCCCCCEEEEcCccccCcCc-cccCCCCCeeEEEEEEE
Confidence 1223345555567888898888788999999999999999999643 678899999999995 78999999999999999
Q ss_pred CCEEEeeceeccCCHHHHHHHHHH-------cCCChhcH-HHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccc
Q 008808 473 RGEEIISGAQRIHIPEFLAERAQA-------CGIDVKTI-STYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLY 544 (553)
Q Consensus 473 ~G~Ei~~G~~r~~d~~~l~~r~~~-------~g~~~~~~-~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~F 544 (553)
+|+||+|||+|+|||.+|++|+++ .|+++..+ +|||+|++||+|||||||||||||+|++||++|||+|++|
T Consensus 225 ~G~Ei~~G~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~yl~~~~~G~pP~~G~GiGieRL~m~l~g~~~Ir~vi~F 304 (304)
T TIGR00462 225 KGLELANGFHELTDAAEQRRRFEADNAERKALGLPRYPLDERFLAALEAGLPECSGVALGVDRLLMLALGADSIDDVLAF 304 (304)
T ss_pred CCEEEeeceeecCCHHHHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHcCCCCCCceEEcHHHHHHHHhCCCchhhcccC
Confidence 999999999999999999999965 78888777 7899999999999999999999999999999999999998
|
Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown. |
| >KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-73 Score=584.48 Aligned_cols=420 Identities=26% Similarity=0.419 Sum_probs=331.5
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
.+.|++|....+|+.|.++|||...|.++ .+.|..|||..|.||+.++.+... ...+....++.||+|.|+|+|+.
T Consensus 35 t~~~~el~~~~vg~kv~l~GWl~~~~~~k-~~~F~~LRD~~G~vq~lls~~s~~---l~~~~~~~v~~e~vv~v~gtvv~ 110 (628)
T KOG2411|consen 35 TSLCGELSVNDVGKKVVLCGWLELHRVHK-MLTFFNLRDAYGIVQQLLSPDSFP---LAQKLENDVPLEDVVQVEGTVVS 110 (628)
T ss_pred hccchhhccCccCCEEEEeeeeeeeeccc-cceEEEeeccCcceEEEecchhhh---HHhcccCCCChhheEeeeeeEec
Confidence 36788898899999999999999999997 899999999999999999876310 01123356999999999999875
Q ss_pred C-C--CccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHH
Q 008808 172 P-D--VEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGI 247 (553)
Q Consensus 172 ~-~--~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~i 247 (553)
. . .+.+..||.+|+...++++++++... |+.+.|...- -.+.+..+||++||||||.+.+|..
T Consensus 111 Rp~~sin~km~tg~vev~~e~~~vln~~~~~~p~~v~df~~l-------------d~~~~er~rl~~RyldLR~~kmq~n 177 (628)
T KOG2411|consen 111 RPNESINSKMKTGFVEVVAEKVEVLNPVNKKLPFEVTDFKEL-------------DDLAGERIRLRFRYLDLRRPKMQNN 177 (628)
T ss_pred ccccccCccccccceEEEeeeeEEecCccCCCccchhhhhhh-------------hccccccccchhhhhhhccHHHHHH
Confidence 5 2 34456788899999999999999888 9988776411 0135678999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHh-CCcEEEecceeeccCCCCCccceeecC---CCCceecccChhhHhhhcccCCCceeEEEece
Q 008808 248 FRIQSQVGNIFRQFLLS-ENFVEIHTPKLIAGSSEGGSAVFRLDY---KGQSACLAQSPQLHKQMSICGDFGRVFETGPV 323 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~-~gF~EV~TP~l~~~~~egga~~F~v~~---~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~ 323 (553)
+|+||.++..+|+||.+ .||+||+||+|.. .++|||..|.|+. -|..+.|.||||.||||||+||++|+|||++|
T Consensus 178 LrlRS~~v~~iR~yl~n~~GFvevETPtLFk-rTPgGA~EFvVPtr~~~g~FYaLpQSPQQfKQlLMvsGidrYyQiARC 256 (628)
T KOG2411|consen 178 LRLRSNVVKKIRRYLNNRHGFVEVETPTLFK-RTPGGAREFVVPTRTPRGKFYALPQSPQQFKQLLMVSGIDRYYQIARC 256 (628)
T ss_pred HHHHHHHHHHHHHHHhhhcCeeeccCcchhc-cCCCccceeecccCCCCCceeecCCCHHHHHHHHHHhchhhHHhHHhh
Confidence 99999999999999976 5699999999976 5788999998864 37889999999999999999999999999999
Q ss_pred ecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHH
Q 008808 324 FRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEG 403 (553)
Q Consensus 324 FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea 403 (553)
||+|+++..|+ |||||+|+||+|. +.+++|+++|+|+.+++....+. ....||+||||.+|
T Consensus 257 fRDEdlR~DRQ-PEFTQvD~EMsF~-~~~dim~liEdll~~~ws~~k~~-----------------~l~~PF~riTY~~A 317 (628)
T KOG2411|consen 257 FRDEDLRADRQ-PEFTQVDMEMSFT-DQEDIMKLIEDLLRYVWSEDKGI-----------------QLPVPFPRITYADA 317 (628)
T ss_pred hcccccCcccC-CcceeeeeEEecc-CHHHHHHHHHHHHHHhchhhcCC-----------------CCCCCcccccHHHH
Confidence 99999998888 9999999999998 58999999999999998776531 11123344444444
Q ss_pred HH------------------------------------------------------------------------------
Q 008808 404 VQ------------------------------------------------------------------------------ 405 (553)
Q Consensus 404 ~~------------------------------------------------------------------------------ 405 (553)
++
T Consensus 318 m~~YG~DKPD~Rf~l~l~dv~~~~~~~~~~~~~~d~l~~~~~vv~~~~~~~~s~~~~rk~~e~~~~~~~~~~~f~~~~~~ 397 (628)
T KOG2411|consen 318 MDKYGSDKPDTRFPLKLKDVSESISKSFEEALLSDGLISVEIVVLGAKKYSNSNYKKRKIYESLGKSGFVGLPFPIEHDA 397 (628)
T ss_pred HHHhCCCCCcccCCcEecchHHhhhhhhhhhhhcCCccceEEEEeccccccchhhHHhHHHHHHhhcccccceeeeeccc
Confidence 32
Q ss_pred -------------------HHHHcCCCCCCCCCC----CcHHHHHHhHHH--------HH---HhCCccEEEeccCCc--
Q 008808 406 -------------------MLKDAGVEIDPLGDL----NTESERKLGQLV--------LE---KYGTEFYILHRYPLA-- 449 (553)
Q Consensus 406 -------------------ll~~~g~~~~~~~dl----~~~~e~~l~~~v--------~~---~~~~~~~ii~~~P~~-- 449 (553)
+.+..|...++.--+ ..+.-..||++- +. +-..-+.||.|||..
T Consensus 398 ~~~w~~~~~~l~~e~~~~el~~~~~l~~~Div~~~~g~~~~~~~~LgrlRL~l~~l~~~~l~d~~~~~~lWVvDFPLF~p 477 (628)
T KOG2411|consen 398 NKNWFKKFSSLTDEAVAIELIKQLGLAEGDIVLLCVGPKVSVNTPLGRLRLVLQDLLVKNLRDKSKFSFLWVVDFPLFSP 477 (628)
T ss_pred hhhhhhhchhhccchHHHHHHHHhCCCCCCEEEEeccCCccCCCchHHHHHHHHHHHhccccccccceEEEEEeccccCc
Confidence 111111100000000 000001233321 10 011236789999964
Q ss_pred -----------CCCCCCcccCCCC---------cceeEEEEEeCCEEEeeceeccCCHHHHHHHHH-HcCCChhcHH--H
Q 008808 450 -----------VRPFYTMPCHDNS---------LYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQ-ACGIDVKTIS--T 506 (553)
Q Consensus 450 -----------~~pfy~~~~~~~~---------~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~-~~g~~~~~~~--~ 506 (553)
++|| |+|+++|- -.+..|||++||.||++|+.|+||++.|+.-++ -.+++.+.+. .
T Consensus 478 ~~E~~q~L~StHHPF-TaP~~~Di~~L~s~p~~~rgqhYDlV~NGvElGGGSiRIhn~diQr~vLe~iLk~p~~~~s~gH 556 (628)
T KOG2411|consen 478 WEEKNQRLESTHHPF-TAPHPKDIDLLESAPEKIRGQHYDLVVNGVELGGGSIRIHNPDIQRYVLEDILKIPEDAESKGH 556 (628)
T ss_pred cccCCceeccccCCC-CCCChhhhhHhhcCchhhhcceeeeEEccEeecCceeEecCHHHHHHHHHHHhcCchhhhhHHH
Confidence 5899 99998752 235789999999999999999999999999998 4567666554 8
Q ss_pred HHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCC
Q 008808 507 YIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPL 549 (553)
Q Consensus 507 yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~ 549 (553)
.|+||.+|+|||||+++|+|||+|+|||..+|||||+||+...
T Consensus 557 LL~ALd~GaPPHGGiAlGlDRlvaml~~a~sIRDVIAFPKt~~ 599 (628)
T KOG2411|consen 557 LLNALDMGAPPHGGIALGLDRLVAMLTGAPSIRDVIAFPKTTT 599 (628)
T ss_pred HHHHhhcCCCCCCceeecHHHHHHHHcCCCchheeeeccccCC
Confidence 8999999999999999999999999999999999999998643
|
|
| >cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-73 Score=592.45 Aligned_cols=294 Identities=26% Similarity=0.434 Sum_probs=250.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee--cCCCCceecccChhhHhhhcccCCCceeEE
Q 008808 242 LANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQMSICGDFGRVFE 319 (553)
Q Consensus 242 ~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~SPql~lk~li~~g~~rVfe 319 (553)
+.++++|++||+|++.||+||.++||+||+||+|+++++++++.+|.+ +|++.++||+||||||||+++++|++|||+
T Consensus 2 ~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~~~~~~~~~~yL~~Spql~~k~ll~~g~~~vf~ 81 (329)
T cd00775 2 EEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITHHNALDMDLYLRIAPELYLKRLIVGGFERVYE 81 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCCccceeEEeccCCCCcceeeccCHHHHHHHHHhcCCCcEEE
Confidence 568999999999999999999999999999999987766667789988 789999999999999999999999999999
Q ss_pred EeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccC
Q 008808 320 TGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLT 399 (553)
Q Consensus 320 Ig~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~ 399 (553)
||||||||++ ++|||||||||||||++. +|+|+|+++|+|+++++..+.+.+ +++ +....+.+..||+|+|
T Consensus 82 i~~~FR~E~~-~~rHl~EFt~le~e~~~~-~~~~~m~~~e~li~~i~~~~~~~~--~~~-----~~~~~~~~~~pf~rit 152 (329)
T cd00775 82 IGRNFRNEGI-DLTHNPEFTMIEFYEAYA-DYNDMMDLTEDLFSGLVKKINGKT--KIE-----YGGKELDFTPPFKRVT 152 (329)
T ss_pred EeccccCCCC-CCCCCCceEEEEEeeecC-CHHHHHHHHHHHHHHHHHHHhCCc--eee-----cCCccccCCCCceEEE
Confidence 9999999998 689999999999999997 799999999999999998887643 121 1222234456899999
Q ss_pred HHHHHHHHHHcCCCCCCCCC-----------------------CCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCc
Q 008808 400 FEEGVQMLKDAGVEIDPLGD-----------------------LNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTM 456 (553)
Q Consensus 400 ~~ea~~ll~~~g~~~~~~~d-----------------------l~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~ 456 (553)
|.||++.+ .|++.....+ ......+++++.|+++++.| +||+|||.+++|| +|
T Consensus 153 y~eA~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve~~~~~p-~fi~~yP~~~~~f-~~ 228 (329)
T cd00775 153 MVDALKEK--TGIDFPELDLEQPEELAKLLAKLIKEKIEKPRTLGKLLDKLFEEFVEPTLIQP-TFIIDHPVEISPL-AK 228 (329)
T ss_pred HHHHHHHH--hCCCcccccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhccccCCC-EEEECCChHhCcC-cC
Confidence 99999744 4654322211 22223445556667777754 6678999999999 56
Q ss_pred ccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH------cCCChhc--HHHHHHHhhcCCCCcceeeecHHHH
Q 008808 457 PCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA------CGIDVKT--ISTYIDSFRYGAPPHGGFGVGLERV 528 (553)
Q Consensus 457 ~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~------~g~~~~~--~~~yl~a~~~G~pP~~G~GiGidRL 528 (553)
++++||++++|||||++|+||+|||+|+|||.+|++|++. .|.++.. ++|||+|++||+|||||||||||||
T Consensus 229 ~~~~~~~~~~rfdl~~~G~Ei~~G~~el~d~~e~~~r~~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~~G~glGleRL 308 (329)
T cd00775 229 RHRSNPGLTERFELFICGKEIANAYTELNDPFDQRERFEEQAKQKEAGDDEAMMMDEDFVTALEYGMPPTGGLGIGIDRL 308 (329)
T ss_pred cCCCCCCeeEEEEeEECCEEEEcccchhCCHHHHHHHHHHHHHHHHcCCCccccchHHHHHHHHCCCCCCCcEEecHHHH
Confidence 8889999999999999999999999999999999999975 3666543 6899999999999999999999999
Q ss_pred HHHHcCCCCccccccccCCC
Q 008808 529 VMLFCGLNNIRKTSLYPRDP 548 (553)
Q Consensus 529 vm~l~g~~nIrdv~~FPr~p 548 (553)
+|++||++|||+|++|||+-
T Consensus 309 ~m~~~g~~~Irdv~~Fp~~~ 328 (329)
T cd00775 309 VMLLTDSNSIRDVILFPAMR 328 (329)
T ss_pred HHHHcCCCcHHhcccCCCCC
Confidence 99999999999999999974
|
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-72 Score=566.68 Aligned_cols=263 Identities=32% Similarity=0.562 Sum_probs=242.9
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCC--CCceecccChhhHhhhcccCCCceeEEEeceec
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYK--GQSACLAQSPQLHKQMSICGDFGRVFETGPVFR 325 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~--~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR 325 (553)
|++||+|++.+|+||.++||+||+||+|+++++++|+.+|.++|+ |.++||+||||+|+|+++++|++|||+||||||
T Consensus 1 ~~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~~~~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~fR 80 (269)
T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKYNALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNFR 80 (269)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEeeecCCCCcEEeecCHHHHHHHHHhcCCCcEEEEeccee
Confidence 579999999999999999999999999998888999999999988 999999999999999999999999999999999
Q ss_pred CCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHH
Q 008808 326 AEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQ 405 (553)
Q Consensus 326 ~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ 405 (553)
+|+ .|.||++|||||||||+|. +|+|+|+++|+|+++++..+.+.+...+. ....++..||+||+|.||++
T Consensus 81 ~e~-~~~~hl~EF~~le~e~~~~-~~~dvm~~~e~lv~~i~~~~~~~~~~~~~-------~~~~~~~~~~~rit~~ea~~ 151 (269)
T cd00669 81 NED-LRARHQPEFTMMDLEMAFA-DYEDVIELTERLVRHLAREVLGVTAVTYG-------FELEDFGLPFPRLTYREALE 151 (269)
T ss_pred CCC-CCCCcccceeEEEEEEecC-CHHHHHHHHHHHHHHHHHHHhcccccccc-------ccccccCCCceEeeHHHHHH
Confidence 995 6999999999999999998 79999999999999999998877655442 11234556899999999997
Q ss_pred HHHHcCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccC
Q 008808 406 MLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIH 485 (553)
Q Consensus 406 ll~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~ 485 (553)
++. .++||+|||...+|||+++++++|++++|||||++|+||+|||+|+|
T Consensus 152 ~~~------------------------------~p~fi~d~P~~~~~fy~~~~~~~~~~~~~fdl~~~g~Ei~~G~~r~~ 201 (269)
T cd00669 152 RYG------------------------------QPLFLTDYPAEMHSPLASPHDVNPEIADAFDLFINGVEVGNGSSRLH 201 (269)
T ss_pred HhC------------------------------CceEEECCCcccCCCCCCcCCCCCCeEEEEEEeeCCEEEeeCchhcC
Confidence 543 35788999999999999999889999999999999999999999999
Q ss_pred CHHHHHHHHHHcCCChh----cHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCC
Q 008808 486 IPEFLAERAQACGIDVK----TISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPL 549 (553)
Q Consensus 486 d~~~l~~r~~~~g~~~~----~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~ 549 (553)
|+++|++|++++|++++ .++|||+|++||+|||||||||||||+|++||++|||||++|||++.
T Consensus 202 d~~~l~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~~G~glGieRL~m~~~g~~~Irdv~~FPr~~~ 269 (269)
T cd00669 202 DPDIQAEVFQEQGINKEAGMEYFEFYLKALEYGLPPHGGLGIGIDRLIMLMTNSPTIREVIAFPKMRR 269 (269)
T ss_pred CHHHHHHHHHHhCcChhhccccHHHHHHHHHcCCCCCceEeeHHHHHHHHHhCCCcHHHcccCCCCCC
Confidence 99999999999999988 89999999999999999999999999999999999999999999873
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >PRK09350 poxB regulator PoxA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-66 Score=534.84 Aligned_cols=287 Identities=20% Similarity=0.275 Sum_probs=238.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC-CCCCccceeecCC------CCceecccChhhHhhhcccCCCcee
Q 008808 245 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS-SEGGSAVFRLDYK------GQSACLAQSPQLHKQMSICGDFGRV 317 (553)
Q Consensus 245 ~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~-~egga~~F~v~~~------~~~~~L~~SPql~lk~li~~g~~rV 317 (553)
..+|++|++|++.||+||.++||+||+||+|...+ .+.++.+|.++|+ |+.+||+||||+|+|+++++|++||
T Consensus 2 ~~~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~f~~~y~~~~~~~~~~~~L~~SPe~~~kr~la~~~~rv 81 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLAAGSGPI 81 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCCceeeeeccccccCCcceEEecCHHHHHHHHhhccccce
Confidence 46899999999999999999999999999997644 2334567988887 7999999999999999999999999
Q ss_pred EEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcc
Q 008808 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLR 397 (553)
Q Consensus 318 feIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 397 (553)
|+||||||||++ +.||++||||||||+++. ||+|+|+++|+|+++++... ++..+....++..... -+...
T Consensus 82 f~i~~~FR~e~~-~~~H~~EFt~lE~y~~~~-d~~dlm~~~E~li~~i~~~~------~~~~i~~~eaf~~~~g-~~~~~ 152 (306)
T PRK09350 82 FQICKSFRNEEA-GRYHNPEFTMLEWYRPHY-DMYRLMNEVDDLLQQVLDCE------PAESLSYQQAFLRYLG-IDPLS 152 (306)
T ss_pred EEecceeecCCC-CCCCCcHHHhhhhhhhCC-CHHHHHHHHHHHHHHHHhcC------CceEEEHHHHHHHHhC-CCCCc
Confidence 999999999998 999999999999999997 79999999999999987530 0000000000000000 01223
Q ss_pred cCHHHHHHHHHHcCC--CCCCCCCCCcHHHHHHhHHHHHHhCC-ccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCC
Q 008808 398 LTFEEGVQMLKDAGV--EIDPLGDLNTESERKLGQLVLEKYGT-EFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRG 474 (553)
Q Consensus 398 i~~~ea~~ll~~~g~--~~~~~~dl~~~~e~~l~~~v~~~~~~-~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G 474 (553)
.+..++.+++.+.|+ ..+...++.+..+++++.+|+++++. .++||+|||.+++|| ++++++||++++|||||++|
T Consensus 153 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~ve~~l~~~~p~fi~~yP~~~~~~-a~~~~~~~~~~~rfdl~i~G 231 (306)
T PRK09350 153 ADKTQLREVAAKLGLSNIADEEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQAAL-AKISTEDHRVAERFEVYFKG 231 (306)
T ss_pred CCHHHHHHHHHHcCCCCcCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEcCccccCcc-ccccCCCCCeeEEEEEEECC
Confidence 455556666677776 33444567788899999999999875 467789999999998 57899999999999999999
Q ss_pred EEEeeceeccCCHHHHHHHHHH-------cCCChhcH-HHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCcccc
Q 008808 475 EEIISGAQRIHIPEFLAERAQA-------CGIDVKTI-STYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKT 541 (553)
Q Consensus 475 ~Ei~~G~~r~~d~~~l~~r~~~-------~g~~~~~~-~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv 541 (553)
+||+|||+|+|||++|++|+++ .|.++..+ ++||+|++||+|||||||||||||+|++||+.|||||
T Consensus 232 ~Ei~nG~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~~l~a~~~G~pp~~G~giGidRL~m~~~g~~~Irdv 306 (306)
T PRK09350 232 IELANGFHELTDAREQRQRFEQDNRKRAARGLPQQPIDENLIAALEAGLPDCSGVALGVDRLIMLALGAESISEV 306 (306)
T ss_pred EEEecchhhcCCHHHHHHHHHHHHHHHHhCCCCcccCcHHHHHHHHcCCCCCCceEecHHHHHHHHcCCCCcccC
Confidence 9999999999999999999974 78877777 6799999999999999999999999999999999997
|
|
| >cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-66 Score=523.25 Aligned_cols=269 Identities=29% Similarity=0.508 Sum_probs=218.3
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCC---CCceecccChhhHhhhcccCCCceeEEEecee
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYK---GQSACLAQSPQLHKQMSICGDFGRVFETGPVF 324 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~---~~~~~L~~SPql~lk~li~~g~~rVfeIg~~F 324 (553)
+++||+|++.||+||.++||+||+||+|++++++ |+.+|.+.|+ +..+||+||||||||+|++||++|||+|||||
T Consensus 1 l~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~-g~~~f~~~~~~~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~f 79 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPE-GARDFLVPSRLHPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCF 79 (280)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEeCCeeecCCCC-CCCCceeccccCCCceeecccCHHHHHHHHHhcCcCcEEEeccce
Confidence 4789999999999999999999999999977775 4567988775 45566999999999999999999999999999
Q ss_pred cCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHH
Q 008808 325 RAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGV 404 (553)
Q Consensus 325 R~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~ 404 (553)
|+|++++.|| +||||||||++|. ||+|+|+++|+|+.+++..+.+. .+..||+|+||.||+
T Consensus 80 R~e~~~~~r~-~Ef~~~e~e~~~~-~~~dlm~~~e~li~~i~~~~~~~-----------------~~~~p~~rity~eA~ 140 (280)
T cd00777 80 RDEDLRADRQ-PEFTQIDIEMSFV-DQEDIMSLIEGLLKYVFKEVLGV-----------------ELTTPFPRMTYAEAM 140 (280)
T ss_pred eCCCCCCCcc-ceeEEeEeeeccC-CHHHHHHHHHHHHHHHHHHHhCC-----------------CCCCCCceeeHHHHH
Confidence 9999977777 5999999999998 79999999999999998877532 123589999999999
Q ss_pred HHHHHcCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEec-cCCcC---CCCCCcccCCCCcceeEEEEEeCCEEEeec
Q 008808 405 QMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHR-YPLAV---RPFYTMPCHDNSLYSNSFDVFIRGEEIISG 480 (553)
Q Consensus 405 ~ll~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~-~P~~~---~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G 480 (553)
+. .|++..+..|+... +..++ .++ +.++++ ||... .|+ ++.++++ ++++|||||++|+||+||
T Consensus 141 ~~---~~~~~~~~~d~~~~-~~~~~---~~~----~~~~~~pf~~~~~~~~~~-~~~~~~~-~~~~~fdl~~~G~Ei~~G 207 (280)
T cd00777 141 ER---YGFKFLWIVDFPLF-EWDEE---EGR----LVSAHHPFTAPKEEDLDL-LEKDPED-ARAQAYDLVLNGVELGGG 207 (280)
T ss_pred HH---hCCCCccccCCccc-CChhH---HHH----HHHHhCCCcCCCcccchh-hhcCCcc-CeeEEEEEEeCCEEEccC
Confidence 75 35555454444311 00000 000 011122 22211 122 2334444 799999999999999999
Q ss_pred eeccCCHHHHHHHHHHcCCC----hhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCC
Q 008808 481 AQRIHIPEFLAERAQACGID----VKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPL 549 (553)
Q Consensus 481 ~~r~~d~~~l~~r~~~~g~~----~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~ 549 (553)
|+|+|||++|++||++.|++ ++.++|||+|++||+|||||||||||||+|++||++|||||++|||+.+
T Consensus 208 ~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~a~~~G~pP~~G~giGidRL~m~~~g~~~Irdv~~FPr~~~ 280 (280)
T cd00777 208 SIRIHDPDIQEKVFEILGLSEEEAEEKFGFLLEAFKYGAPPHGGIALGLDRLVMLLTGSESIRDVIAFPKTQN 280 (280)
T ss_pred EEEcCCHHHHHHHHHHcCCChhhhhhhHHHHHHHHHCCCCCCCeEeEhHHHHHHHHcCCCchheEeecCCCCC
Confidence 99999999999999999988 4568999999999999999999999999999999999999999999863
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. |
| >COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-57 Score=438.98 Aligned_cols=274 Identities=21% Similarity=0.336 Sum_probs=236.3
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeecc-CCCCCccceeecCC------CCceecccChhhHhhhcccCCCceeE
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAG-SSEGGSAVFRLDYK------GQSACLAQSPQLHKQMSICGDFGRVF 318 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~-~~egga~~F~v~~~------~~~~~L~~SPql~lk~li~~g~~rVf 318 (553)
..+..|++|++.||.||.++||+||+||.|+.+ .++.+-.+|.|.|+ +.++||++|||+++|+|+++|.+++|
T Consensus 14 ~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag~~~if 93 (322)
T COG2269 14 DNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAAGSGPIF 93 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCccceeeeeeEEeccCccccceeeeecCcHHHHHHHHHccCCcch
Confidence 347889999999999999999999999999643 36667779999875 37899999999999999999999999
Q ss_pred EEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCccc
Q 008808 319 ETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRL 398 (553)
Q Consensus 319 eIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i 398 (553)
|||+||||++. +.+|+|||||||||..+. ||+.+|+.+.+|+..++.... +.++
T Consensus 94 ql~kvfRN~E~-G~~H~PEFTMLEWYrv~~-d~~~lm~e~~~Ll~~vl~~~~------------------------~E~l 147 (322)
T COG2269 94 QLGKVFRNEEM-GRLHNPEFTMLEWYRVGC-DYYRLMNEVDDLLQLVLECVE------------------------AERL 147 (322)
T ss_pred hhhHHHhcccc-cccCCCceeEeeeeccCC-cHHHHHHHHHHHHHHHHccCC------------------------ccee
Confidence 99999999994 899999999999999986 799999999999998876542 2333
Q ss_pred CHHHH-----------------HHHHHHcCCCCCCCCCCCcHHHHHHhHHHHHHhCCc-cEEEeccCCcCCCCCCcccCC
Q 008808 399 TFEEG-----------------VQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTE-FYILHRYPLAVRPFYTMPCHD 460 (553)
Q Consensus 399 ~~~ea-----------------~~ll~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~-~~ii~~~P~~~~pfy~~~~~~ 460 (553)
||.|| .+.++..|+.....+|+.+..++++...|++++|.. ..+|+|||.....+ +++++.
T Consensus 148 s~~eaF~r~~gid~l~~~~~~L~~~~~~~~l~~~~~~~~d~L~~~lf~~~VEP~lg~~rpt~ly~fP~~qaaL-A~i~~~ 226 (322)
T COG2269 148 SYQEAFLRYLGIDPLSADKTELREAAAKLGLSAATDEDWDTLLQLLFVEGVEPNLGKERPTFLYHFPASQAAL-AQISTG 226 (322)
T ss_pred eHHHHHHHHhCCCcccccHHHHHHHHHhcCCCCCCccCHHHHHHHHHHhhcCcccCCCCceEEEeCcHHHHHh-hccCCC
Confidence 33333 334556677766667788888999998899988753 57789999999998 789999
Q ss_pred CCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH-------cCCCh-hcHHHHHHHhhcCCCCcceeeecHHHHHHHH
Q 008808 461 NSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA-------CGIDV-KTISTYIDSFRYGAPPHGGFGVGLERVVMLF 532 (553)
Q Consensus 461 ~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~-------~g~~~-~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l 532 (553)
||++++|||||++|+||+||+.|++|+.+|+.||+. .|... ..+++||.|+.. ||||+|+++|+|||+|++
T Consensus 227 D~rVAERFElY~kGiELaNgf~EltDa~EqrrRfe~dn~~r~~~~l~~~piDe~fl~Ala~-mP~cSGvALG~DRLvmLa 305 (322)
T COG2269 227 DPRVAERFELYYKGIELANGFHELTDAAEQRRRFEQDNKERARRGLPQYPIDEDFLAALAR-MPPCSGVALGFDRLVMLA 305 (322)
T ss_pred CcchhhhhhheeeeeeecccchhcCCHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHh-CCCcccceecHHHHHHHH
Confidence 999999999999999999999999999999999962 23332 345899999999 999999999999999999
Q ss_pred cCCCCccccccccCC
Q 008808 533 CGLNNIRKTSLYPRD 547 (553)
Q Consensus 533 ~g~~nIrdv~~FPr~ 547 (553)
+|..+|.+|+.||.+
T Consensus 306 lg~~~i~~Vi~f~v~ 320 (322)
T COG2269 306 LGAESIDDVIAFPVA 320 (322)
T ss_pred cCcchHHHHhhcccc
Confidence 999999999999975
|
|
| >cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-22 Score=183.54 Aligned_cols=127 Identities=32% Similarity=0.456 Sum_probs=103.3
Q ss_pred EeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCC
Q 008808 94 VVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 173 (553)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~ 173 (553)
.++++...+.|+.|+|+|||+++|.+| |++|++|||+++.+|||++.+.. .+ +++...|+.||+|.|+|++..++
T Consensus 4 ~~~~~~~~~~g~~V~i~Gwv~~~R~~g-k~~Fi~LrD~~g~~Q~v~~~~~~---~~-~~~~~~l~~gs~V~V~G~~~~~~ 78 (135)
T cd04317 4 YCGELRESHVGQEVTLCGWVQRRRDHG-GLIFIDLRDRYGIVQVVFDPEEA---PE-FELAEKLRNESVIQVTGKVRARP 78 (135)
T ss_pred ehhhCChhHCCCEEEEEEeEehhcccC-CEEEEEEecCCeeEEEEEeCCch---hH-HHHHhCCCCccEEEEEEEEECCC
Confidence 355666677899999999999999999 79999999999999999986531 22 46778899999999999998754
Q ss_pred Cc-c--CCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHH
Q 008808 174 VE-I--KGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLA 243 (553)
Q Consensus 174 ~~-~--~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~ 243 (553)
.+ + +..++++||+++++++|++| .+ |+...+.. ..+.++|++|||||||+|.
T Consensus 79 ~~~~~~~~~~~~~El~~~~i~vl~~~-~~lP~~~~~~~-----------------~~~~~~r~~~R~LdLR~~~ 134 (135)
T cd04317 79 EGTVNPKLPTGEIEVVASELEVLNKA-KTLPFEIDDDV-----------------NVSEELRLKYRYLDLRRPK 134 (135)
T ss_pred ccccCCCCCCCcEEEEEeEEEEEECC-CCCCCcccccc-----------------CCCHHHhhhcceeecCCCC
Confidence 21 1 22346799999999999999 67 98776532 3578999999999999863
|
These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh |
| >cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS) | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-21 Score=169.83 Aligned_cols=107 Identities=22% Similarity=0.374 Sum_probs=90.8
Q ss_pred EEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEE
Q 008808 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEV 185 (553)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei 185 (553)
+|+|+|||+++|.+| |++|++|||+++.||||++.+.. .++.|.++.+.|+.||+|.|+|+++.++ ++++||
T Consensus 1 ~v~v~GwV~~~R~~g-~~~Fi~lrd~~~~lQ~v~~~~~~-~~~~~~~~~~~l~~g~~V~v~G~v~~~~------~g~~El 72 (108)
T cd04322 1 EVSVAGRIMSKRGSG-KLSFADLQDESGKIQVYVNKDDL-GEEEFEDFKKLLDLGDIIGVTGTPFKTK------TGELSI 72 (108)
T ss_pred CEEEEEEEEEEecCC-CeEEEEEEECCeEEEEEEECCCC-CHHHHHHHHhcCCCCCEEEEEEEEEecC------CCCEEE
Confidence 489999999999999 79999999999999999986632 3455666766699999999999998765 257999
Q ss_pred EEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceee
Q 008808 186 QIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDI 239 (553)
Q Consensus 186 ~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdL 239 (553)
+++++++||+|..+ |+...+ ..+.|+|+++|||||
T Consensus 73 ~~~~~~ils~~~~plP~~~~~-------------------~~~~~~r~~~R~ldl 108 (108)
T cd04322 73 FVKEFTLLSKSLRPLPEKFHG-------------------LTDVETRYRQRYLDL 108 (108)
T ss_pred EeCEeEEeeccCCCCCCCccC-------------------cCChhheeecccccC
Confidence 99999999999877 875543 257899999999997
|
These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein |
| >cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.9e-19 Score=152.79 Aligned_cols=100 Identities=51% Similarity=0.752 Sum_probs=85.5
Q ss_pred EEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCC-ceeEE
Q 008808 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA-TQQVE 184 (553)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~-t~~~E 184 (553)
.|+|+|||+++|.+|+|++|++|||+++.|||+++.+....+++|++++..|+.||+|.|+|++..++++++++ ++++|
T Consensus 1 ~V~i~Gwv~~~R~~g~k~~Fi~LrD~sg~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~E 80 (102)
T cd04320 1 EVLIRARVHTSRAQGAKLAFLVLRQQGYTIQGVLAASAEGVSKQMVKWAGSLSKESIVDVEGTVKKPEEPIKSCTQQDVE 80 (102)
T ss_pred CEEEEEEEEEeecCCCceEEEEEecCCceEEEEEeCCcccCCHHHHHHHhcCCCccEEEEEEEEECCCCcccCCCcCcEE
Confidence 48999999999999989999999999999999998764224677888999999999999999999876554443 36799
Q ss_pred EEEeEEEEeecCCCC-CCcccc
Q 008808 185 VQIKKLYCVSRAAKT-PITIED 205 (553)
Q Consensus 185 i~v~~i~~ls~~~~~-P~~~~d 205 (553)
|+++++++|++|..+ |+++.|
T Consensus 81 l~~~~i~il~~~~~~~P~~~~d 102 (102)
T cd04320 81 LHIEKIYVVSEAAEPLPFQLED 102 (102)
T ss_pred EEEEEEEEEecCCCCCCCCCCC
Confidence 999999999999877 987643
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. |
| >cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-18 Score=150.85 Aligned_cols=103 Identities=32% Similarity=0.490 Sum_probs=88.8
Q ss_pred eccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC
Q 008808 95 VGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV 174 (553)
Q Consensus 95 i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~ 174 (553)
++++.....|+.|+|+|||+++|.+| |++|++|||+++.+|||++.+ ..++++++++..|+.||+|.|+|++..++.
T Consensus 3 ~~~l~~~~~g~~V~v~Gwv~~~R~~g-~~~Fi~LrD~~g~iQ~v~~~~--~~~~~~~~~~~~l~~es~V~V~G~v~~~~~ 79 (108)
T cd04316 3 SAEITPELDGEEVTVAGWVHEIRDLG-GIKFVILRDREGIVQVTAPKK--KVDKELFKTVRKLSRESVISVTGTVKAEPK 79 (108)
T ss_pred hhhCchhhCCCEEEEEEEEEeeeccC-CeEEEEEecCCeeEEEEEeCC--CCCHHHHHHHhCCCCcCEEEEEEEEEeCCC
Confidence 45676677899999999999999999 899999999999999999854 355678889999999999999999988763
Q ss_pred ccCCCceeEEEEEeEEEEeecCCCC-CCccc
Q 008808 175 EIKGATQQVEVQIKKLYCVSRAAKT-PITIE 204 (553)
Q Consensus 175 ~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~ 204 (553)
. .+.+||+++++.+|++|..+ |++..
T Consensus 80 ~----~~~~Ei~~~~i~il~~~~~~~P~~~~ 106 (108)
T cd04316 80 A----PNGVEIIPEEIEVLSEAKTPLPLDPT 106 (108)
T ss_pred C----CCCEEEEEeEEEEEeCCCCCCCcCcC
Confidence 2 24699999999999999877 87543
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes. |
| >cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.8e-18 Score=146.49 Aligned_cols=102 Identities=29% Similarity=0.360 Sum_probs=86.2
Q ss_pred EEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEE
Q 008808 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEV 185 (553)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei 185 (553)
+|+|+|||+++|.+| |++|++|||+++.+||+++.+ .++++++....|+.||+|.|+|++...+.. .+.+||
T Consensus 1 ~V~v~Gwv~~~R~~g-k~~Fi~lrD~~g~iQ~v~~~~---~~~~~~~~~~~l~~~s~v~V~G~v~~~~~~----~~~~Ei 72 (103)
T cd04319 1 KVTLAGWVYRKREVG-KKAFIVLRDSTGIVQAVFSKD---LNEEAYREAKKVGIESSVIVEGAVKADPRA----PGGAEV 72 (103)
T ss_pred CEEEEEEEEeEEcCC-CeEEEEEecCCeeEEEEEeCC---CCHHHHHHHhCCCCCCEEEEEEEEEECCCC----CCCEEE
Confidence 389999999999999 899999999999999999864 345677777889999999999999876532 236999
Q ss_pred EEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccce
Q 008808 186 QIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVI 237 (553)
Q Consensus 186 ~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~L 237 (553)
.++++++|++|. + |++.+ .+.|+|+++|||
T Consensus 73 ~~~~i~vl~~a~-~~pi~~~---------------------~~~~~~~~~rhL 103 (103)
T cd04319 73 HGEKLEIIQNVE-FFPITED---------------------ASDEFLLDVRHL 103 (103)
T ss_pred EEEEEEEEecCC-CCccCCC---------------------CCHHHHhhccCC
Confidence 999999999996 5 87421 268999999997
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. |
| >PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-16 Score=168.28 Aligned_cols=118 Identities=22% Similarity=0.350 Sum_probs=90.1
Q ss_pred CCCccccccccceeeccHHhHHHHHH-----HHHHHHHHHHHhHhCCcEEEecceeeccC------CCCCccc-eeecCC
Q 008808 225 RVNQDTRLNNRVIDIRTLANQGIFRI-----QSQVGNIFRQFLLSENFVEIHTPKLIAGS------SEGGSAV-FRLDYK 292 (553)
Q Consensus 225 ~~~~e~Rl~~R~LdLr~~~~~~if~~-----Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~------~egga~~-F~v~~~ 292 (553)
..++|+||++| |.+..+++|.+ .+.|.+.||+||...||.||.||+|+... ..++... ..+-+.
T Consensus 179 ~~~~e~~l~~r----r~~~~~~~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~i 254 (417)
T PRK09537 179 FKELESELVSR----RKNDLKQMYEEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRV 254 (417)
T ss_pred hhhHHHHHHHh----cchhhHHhhccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheee
Confidence 35789999999 88999999999 99999999999999999999999996321 1111110 011113
Q ss_pred CCceecc--cChhhHhhhcc----cCCCceeEEEeceecCCCCCCCCCcCcccceeEEecc
Q 008808 293 GQSACLA--QSPQLHKQMSI----CGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347 (553)
Q Consensus 293 ~~~~~L~--~SPql~lk~li----~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~ 347 (553)
+...+|| ..|.|+..+.. ....-|+||||+|||+|.. +.+|++||+|++++...
T Consensus 255 deel~LRpsLtPsLlr~la~n~k~~~~P~RIFEIG~VFR~E~~-g~~hlrEf~Ql~~~iiG 314 (417)
T PRK09537 255 DKNFCLRPMLAPGLYNYLRKLDRILPDPIKIFEIGPCYRKESD-GKEHLEEFTMVNFCQMG 314 (417)
T ss_pred CCceEehhhhHHHHHHHHHhhhhcccCCeeEEEEeceEecCCC-CCCCcceEEEEEEEEeC
Confidence 5678999 68898875321 1223589999999999985 78999999999998763
|
|
| >cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=127.84 Aligned_cols=85 Identities=31% Similarity=0.397 Sum_probs=73.5
Q ss_pred EEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEE
Q 008808 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEV 185 (553)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei 185 (553)
.|+|+|||+++|.+| |++|++|||+++.+|++++.+. . .+|+++...|+.||+|.|+|++..++.+. ++++++||
T Consensus 1 ~V~i~Gwv~~~R~~g-~~~Fi~Lrd~~~~iQ~v~~~~~--~-~~~~~~~~~l~~~s~V~v~G~~~~~~~~~-~~~~~~El 75 (85)
T cd04100 1 EVTLAGWVHSRRDHG-GLIFIDLRDGSGIVQVVVNKEE--L-GEFFEEAEKLRTESVVGVTGTVVKRPEGN-LATGEIEL 75 (85)
T ss_pred CEEEEEEEehhccCC-CEEEEEEEeCCeeEEEEEECCc--C-hHHHHHHhCCCCCCEEEEEeEEEECCCCC-CCCCCEEE
Confidence 389999999999999 7999999999999999998763 1 23788889999999999999998876443 45678999
Q ss_pred EEeEEEEeec
Q 008808 186 QIKKLYCVSR 195 (553)
Q Consensus 186 ~v~~i~~ls~ 195 (553)
.++++++|++
T Consensus 76 ~~~~i~il~~ 85 (85)
T cd04100 76 QAEELEVLSK 85 (85)
T ss_pred EEeEEEEECC
Confidence 9999999975
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A |
| >cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.4e-15 Score=123.33 Aligned_cols=84 Identities=31% Similarity=0.383 Sum_probs=70.5
Q ss_pred EEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEE
Q 008808 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEV 185 (553)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei 185 (553)
.|+|+|||+++|.+| |++|++|||+++.+|++++.+. .+. +++.+.|+.||+|.|+|++..++.+. ...+.+||
T Consensus 1 ~V~v~Gwv~~~R~~g-~~~Fi~LrD~~~~iQ~v~~~~~--~~~--~~~~~~l~~es~V~V~G~v~~~~~~~-~~~~~~Ei 74 (84)
T cd04323 1 RVKVFGWVHRLRSQK-KLMFLVLRDGTGFLQCVLSKKL--VTE--FYDAKSLTQESSVEVTGEVKEDPRAK-QAPGGYEL 74 (84)
T ss_pred CEEEEEEEEEEecCC-CcEEEEEEcCCeEEEEEEcCCc--chh--HHHHhcCCCcCEEEEEEEEEECCccc-CCCCCEEE
Confidence 389999999999998 9999999999999999998653 122 56778999999999999999876543 22456999
Q ss_pred EEeEEEEeec
Q 008808 186 QIKKLYCVSR 195 (553)
Q Consensus 186 ~v~~i~~ls~ 195 (553)
+++++++||.
T Consensus 75 ~~~~i~vl~~ 84 (84)
T cd04323 75 QVDYLEIIGE 84 (84)
T ss_pred EEEEEEEEcC
Confidence 9999999974
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with |
| >PTZ00213 asparagine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.4e-13 Score=135.91 Aligned_cols=274 Identities=19% Similarity=0.186 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHHhH-----hCCcEEEecceeeccCCCC-----Ccc---ceeecCC-CCceecccChhhHhhhccc-CC
Q 008808 249 RIQSQVGNIFRQFLL-----SENFVEIHTPKLIAGSSEG-----GSA---VFRLDYK-GQSACLAQSPQLHKQMSIC-GD 313 (553)
Q Consensus 249 ~~Rs~i~~~iR~fl~-----~~gF~EV~TP~l~~~~~eg-----ga~---~F~v~~~-~~~~~L~~SPql~lk~li~-~g 313 (553)
+....-|..|++||. +.+.+.|..|++....++- |.+ .|.+..+ +..+-.-+|---||.+++. -|
T Consensus 9 ~~~q~aI~~iK~~F~~~L~~~LnL~rVsaPLfv~~~~GlnDnLnG~ErpV~f~~k~~~~~~~evVhSLAKWKR~aL~~y~ 88 (348)
T PTZ00213 9 IDLQEQILKVKQIFSEALAKELNLIRVEAPLLAEVGDGTQDNLSGVEKAVQVHVKGIPNSVFEVVHSLAKWKRLTLGEHK 88 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCeeEecCCeEEcCCCCcccCCCCeeeeeEEecCCCCCceeEEehhhHHHHHHHHHhcC
Confidence 333444555666653 5799999999987533221 211 4555543 5667778888889888774 23
Q ss_pred C---ceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCcccc
Q 008808 314 F---GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLK 390 (553)
Q Consensus 314 ~---~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~ 390 (553)
| +.+|.=.+..|..+.-+..|.-=--|-|||+.+.. -+.-++.+.+.+..|+..+... -..+...||.-.-.
T Consensus 89 f~~geGlytdMnAiR~dE~ldn~HS~yVDQWDWEkvI~~-~~R~~~~Lk~tV~~iy~~ik~t----e~~~~~~yp~l~~~ 163 (348)
T PTZ00213 89 FPVGEGIYTDMNALRVEEELDNIHSVYVDQWDWEMVIAP-ADRNLEYLKNTVRRLYAAIRKT----EEAICNEYPNLKRI 163 (348)
T ss_pred CCCCceeeeccccccCCcccCccceeEeccccHHHhcCc-cccCHHHHHHHHHHHHHHHHHH----HHHHHHHchhhhhc
Confidence 3 57888777777544348899877778888887753 3555566666666666555421 11122234321111
Q ss_pred CCCCCcccCHHHHHHHHHHcCCCCCCCCCCC-cHHHHHHhHHHHHHhCCccEEEecc------CCcCCCC-CCccc----
Q 008808 391 YKPKTLRLTFEEGVQMLKDAGVEIDPLGDLN-TESERKLGQLVLEKYGTEFYILHRY------PLAVRPF-YTMPC---- 458 (553)
Q Consensus 391 ~~~~~~~i~~~ea~~ll~~~g~~~~~~~dl~-~~~e~~l~~~v~~~~~~~~~ii~~~------P~~~~pf-y~~~~---- 458 (553)
+. ..|+|--+-+|++.. -+++ .+-|..+. .+++.=|.+=..+ |...|.. |.-..
T Consensus 164 Lp---~~I~FitsqeL~~~Y-------P~lt~keRE~~i~----ke~gaVFi~~IG~~L~~G~~Hd~RApDYDDW~t~~~ 229 (348)
T PTZ00213 164 LP---KEITFLHTEHLLKMY-------PNLSPKEREREIV----KKYGAVFLIGIGCKLSSGDTHDLRAPDYDDWSSPVS 229 (348)
T ss_pred CC---CceEEecHHHHHHHC-------CCCCHHHHHHHHH----HHhCcEEEEeccCcCCCCCcCCCCCCCccccccccc
Confidence 11 123333232222221 1122 12333332 2334322111112 2222211 10000
Q ss_pred --------------CCCCcceeEEEEEe------CCEEEeeceeccCCHHHHHHHHHHcC-CChhcHHHHHHHhhcC-CC
Q 008808 459 --------------HDNSLYSNSFDVFI------RGEEIISGAQRIHIPEFLAERAQACG-IDVKTISTYIDSFRYG-AP 516 (553)
Q Consensus 459 --------------~~~~~~~~~fdl~~------~G~Ei~~G~~r~~d~~~l~~r~~~~g-~~~~~~~~yl~a~~~G-~p 516 (553)
+-.......=|+++ +..||.+|+.|. |++.+.+|++..| .+...+.+|++ +..| +|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~gLNGDilvw~~~l~~a~ELSSmGiRV-d~esL~~Qlk~~g~~dr~~l~~h~~-ll~g~LP 307 (348)
T PTZ00213 230 ASKIGFPTADPTMNSLMSLQGLNGDILVYNPVLDDVLELSSMGIRV-DAEALRRQLEITNNTDRLKCMWHQM-LLNGELP 307 (348)
T ss_pred ccccccccccccccccccccCccceEEEechhcCceeecCCcceEE-cHHHHHHHHHHcCCCccccCHHHHH-HHcCCCC
Confidence 00000112335443 248999999999 9999999999999 57778889999 7778 99
Q ss_pred CcceeeecHHHHHHHHcCCCCcccccc
Q 008808 517 PHGGFGVGLERVVMLFCGLNNIRKTSL 543 (553)
Q Consensus 517 P~~G~GiGidRLvm~l~g~~nIrdv~~ 543 (553)
+|+|+|||+|||+|+|||+.+|.+|+.
T Consensus 308 ~TiGGGIGqsRL~M~LL~k~HIgEVQ~ 334 (348)
T PTZ00213 308 QTIGGGIGQSRLCMFMLRKKHIGEVQC 334 (348)
T ss_pred CcccccccHHHHHHHHhCcchhcceee
Confidence 999999999999999999999999864
|
|
| >cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-13 Score=136.61 Aligned_cols=258 Identities=19% Similarity=0.225 Sum_probs=157.3
Q ss_pred HhCCcEEEecceeeccCCC-----CCc-c--ceeecCC-CCceecccChhhHhhhccc-CCC---ceeEEEeceecC-CC
Q 008808 263 LSENFVEIHTPKLIAGSSE-----GGS-A--VFRLDYK-GQSACLAQSPQLHKQMSIC-GDF---GRVFETGPVFRA-ED 328 (553)
Q Consensus 263 ~~~gF~EV~TP~l~~~~~e-----gga-~--~F~v~~~-~~~~~L~~SPql~lk~li~-~g~---~rVfeIg~~FR~-E~ 328 (553)
.+.+.+.|..|+++...++ .|. + .|.+..+ +..+-.-+|---||.+++. -|| +.+|.=....|. |+
T Consensus 17 ~~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~f~~k~~~~~~~eiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~ 96 (309)
T cd00645 17 KELNLIRVSAPLFVEKGSGLNDNLNGVEKPVSFKVKALPDATLEVVHSLAKWKRLALARYGFSLGEGLYTDMNAIRPDED 96 (309)
T ss_pred HHhCeEEecCCeEEecCCCCccCCCCcccceEeecCCCCCceeEEeeehHHHHHHHHHhcCCCCCceeccCCccccCCcc
Confidence 3579999999998754332 122 2 4666544 5667777888889888874 234 568888887776 55
Q ss_pred CCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHHHHH
Q 008808 329 SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLK 408 (553)
Q Consensus 329 ~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~ 408 (553)
-+..|.-=--|-|||..+.. -+.-++.+.+.+..|+..+... -..+...||.-.-.+. ..|+|--..++++
T Consensus 97 -ldn~HS~yVDQWDWEkvI~~-~~R~~~~Lk~tV~~iy~~ik~t----e~~~~~~y~~~~~~Lp---~~i~FitsqeL~~ 167 (309)
T cd00645 97 -LDNIHSIYVDQWDWEKVISK-GERNLETLKETVNKIYKAIKET----ELEVNEKYPQLEPILP---EEITFITSQELED 167 (309)
T ss_pred -cCccceeEeccccHHhhcCc-cccCHHHHHHHHHHHHHHHHHH----HHHHHHHchhhhhcCC---CceEEecHHHHHH
Confidence 48899877778888877653 3455555566666666555421 1122233442111111 2233333333222
Q ss_pred HcCCCCCCCCCCC-cHHHHHHhHHHHHHhCCccEEEeccCCcC-CCCCCcccCCCCcceeEEEEEe------CCEEEeec
Q 008808 409 DAGVEIDPLGDLN-TESERKLGQLVLEKYGTEFYILHRYPLAV-RPFYTMPCHDNSLYSNSFDVFI------RGEEIISG 480 (553)
Q Consensus 409 ~~g~~~~~~~dl~-~~~e~~l~~~v~~~~~~~~~ii~~~P~~~-~pfy~~~~~~~~~~~~~fdl~~------~G~Ei~~G 480 (553)
.. -+++ .+-|..+. .+++.=|.+=..++... .|- ....|+...++..=|+++ +..||.||
T Consensus 168 ~Y-------P~l~~keRE~~i~----ke~gaVFi~~IG~~L~~g~~H-d~RapDYDDW~LNGDil~w~~~l~~a~ELSSm 235 (309)
T cd00645 168 RY-------PDLTPKEREDAIC----KEHGAVFIIGIGGKLSDGKKH-DGRAPDYDDWTLNGDILVWNPVLQRAFELSSM 235 (309)
T ss_pred HC-------CCCCHHHHHHHHH----HHhCcEEEEeccCcCCCCCcC-CCCCCCCcCccccceEEEEchhcCceeeecCc
Confidence 22 1232 23344443 34554332222333211 000 111122222445556554 24899999
Q ss_pred eeccCCHHHHHHHHHHcC-CChhcHHHHHHHhhcC-CCCcceeeecHHHHHHHHcCCCCcccccc
Q 008808 481 AQRIHIPEFLAERAQACG-IDVKTISTYIDSFRYG-APPHGGFGVGLERVVMLFCGLNNIRKTSL 543 (553)
Q Consensus 481 ~~r~~d~~~l~~r~~~~g-~~~~~~~~yl~a~~~G-~pP~~G~GiGidRLvm~l~g~~nIrdv~~ 543 (553)
+.|.+. +.+.++++..| .+...+.+ ++++..| +|||+|+|||+|||+|+|||+.+|.+|.+
T Consensus 236 GiRVde-e~L~~Ql~~~g~~dr~~l~~-h~~ll~g~LP~TiGgGIGqsRL~M~LL~k~HIgEVqa 298 (309)
T cd00645 236 GIRVDE-ESLQKQLKLAGDEDRLELPF-HKMLLNGELPQTIGGGIGQSRLCMFLLQKAHIGEVQA 298 (309)
T ss_pred ceEecH-HHHHHHHHHcCCCccccCHH-HHHHHcCCCCccccccccHHHHHHHHhccchhcceee
Confidence 999999 99999999998 45555555 9999999 99999999999999999999999999965
|
AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB. |
| >TIGR02367 PylS pyrrolysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.56 E-value=6e-14 Score=148.04 Aligned_cols=94 Identities=28% Similarity=0.477 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhHhCCcEEEecceeeccC------CCCCc----cceeecCCCCceecc--cChhhHhhhcc----cCC
Q 008808 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGS------SEGGS----AVFRLDYKGQSACLA--QSPQLHKQMSI----CGD 313 (553)
Q Consensus 250 ~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~------~egga----~~F~v~~~~~~~~L~--~SPql~lk~li----~~g 313 (553)
-.+.+.+.+|++|...||.||.||+|.... .+.+. ..|. ++...+|| +.|+|+..... ...
T Consensus 241 ~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk---~ee~lvLRPdLTPsLaR~La~N~~~l~~ 317 (453)
T TIGR02367 241 YLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFR---VDKNFCLRPMLAPNLYNYLRKLDRALPD 317 (453)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceE---ecCceEecccCHHHHHHHHHHhhhhccC
Confidence 357788999999999999999999995210 11111 2333 34568999 88998854321 122
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEecc
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~ 347 (553)
.-|+||||+|||+|.. +.+|+.||+|++++...
T Consensus 318 PqKIFEIGkVFR~E~~-~~thlREF~QL~~eIaG 350 (453)
T TIGR02367 318 PIKIFEIGPCYRKESD-GKEHLEEFTMLNFCQMG 350 (453)
T ss_pred CeeEEEEcCeEecCCC-CCCCcCeEEEEEEEEEC
Confidence 4599999999999985 78999999999998764
|
PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase. |
| >cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.8e-14 Score=118.10 Aligned_cols=85 Identities=19% Similarity=0.346 Sum_probs=68.5
Q ss_pred EEEEEEEEeeeccCCCceEEEEEEeCCe-EEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEE
Q 008808 106 EVLIRGRVHTTRPVGNKLAFVVVRERVS-TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVE 184 (553)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~-~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~E 184 (553)
+|+|+|||+++|..+++++|++|||+++ .+||+++.+. +.++....|+.||+|.|+|++...+......++++|
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~~g~~iQvv~~~~~-----~~~~~~~~l~~~s~V~V~G~v~~~~~~~~~~~~~~E 75 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDPNGDIIQLVSTAKK-----DAFSLLKSITAESPVQVRGKLQLKEAKSSEKNDEWE 75 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECCCCCEEEEEECCCH-----HHHHHHhcCCCCcEEEEEEEEEeCCCcCCCCCCCEE
Confidence 3899999999999433899999999999 7999987642 234455789999999999999876643223457899
Q ss_pred EEEeEEEEeec
Q 008808 185 VQIKKLYCVSR 195 (553)
Q Consensus 185 i~v~~i~~ls~ 195 (553)
|.++++.+|++
T Consensus 76 i~~~~i~il~~ 86 (86)
T cd04321 76 LVVDDIQTLNA 86 (86)
T ss_pred EEEEEEEEecC
Confidence 99999999974
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for |
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-14 Score=140.13 Aligned_cols=98 Identities=24% Similarity=0.288 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhHhCCcEEEecceeeccCC-CC-C-c--ccee-ecCCCCceecccChhhHhhhcccC----CCceeEE
Q 008808 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-EG-G-S--AVFR-LDYKGQSACLAQSPQLHKQMSICG----DFGRVFE 319 (553)
Q Consensus 250 ~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-eg-g-a--~~F~-v~~~~~~~~L~~SPql~lk~li~~----g~~rVfe 319 (553)
+|+.+.+.+|++|...||.||.||.|..... .. | . .... .+..+...+||.|+...+..++.. ..-|+||
T Consensus 1 ~~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfe 80 (211)
T cd00768 1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAE 80 (211)
T ss_pred CHHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEE
Confidence 3678899999999999999999999965311 10 1 0 1122 234567889999999999877654 4579999
Q ss_pred EeceecCCCCCCC--CCcCcccceeEEeccc
Q 008808 320 TGPVFRAEDSYTH--RHLCEFTGLDVEMEIK 348 (553)
Q Consensus 320 Ig~~FR~E~~~t~--rHl~EFt~lE~e~a~~ 348 (553)
||+|||+|.. +. +|+.||+|+++++...
T Consensus 81 ig~vfr~e~~-~~~~~~~~ef~~l~~~~~g~ 110 (211)
T cd00768 81 IGPAFRNEGG-RRGLRRVREFTQLEGEVFGE 110 (211)
T ss_pred EcceeecCCC-ccccccceeEEEcCEEEEcC
Confidence 9999999975 43 7889999999998764
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. |
| >cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-13 Score=115.49 Aligned_cols=79 Identities=23% Similarity=0.325 Sum_probs=67.4
Q ss_pred EEEEEEEEeeeccCCCceEEEEEEeCCe--EEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeE
Q 008808 106 EVLIRGRVHTTRPVGNKLAFVVVRERVS--TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQV 183 (553)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~--~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~ 183 (553)
.|+|+|||+++|.+| +++|++|||+++ .|||+++.+.. . +++...|+.||+|.|+|.+..++.+ .+++
T Consensus 1 ~v~v~Gwv~~~R~~g-~~~Fi~LrD~s~~~~lQvv~~~~~~--~---~~~~~~l~~gs~V~v~G~v~~~~~~----~~~~ 70 (82)
T cd04318 1 EVTVNGWVRSVRDSK-KISFIELNDGSCLKNLQVVVDKELT--N---FKEILKLSTGSSIRVEGVLVKSPGA----KQPF 70 (82)
T ss_pred CEEEEEeEEEEEcCC-cEEEEEEECCCCccCEEEEEeCccc--C---HHHHhcCCCceEEEEEEEEEeCCCC----CCCE
Confidence 389999999999999 899999999988 59999987632 1 4667889999999999999887632 4679
Q ss_pred EEEEeEEEEee
Q 008808 184 EVQIKKLYCVS 194 (553)
Q Consensus 184 Ei~v~~i~~ls 194 (553)
||+++++.+++
T Consensus 71 El~~~~i~il~ 81 (82)
T cd04318 71 ELQAEKIEVLG 81 (82)
T ss_pred EEEEEEEEEec
Confidence 99999999986
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial |
| >PRK05425 asparagine synthetase AsnA; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.3e-13 Score=132.54 Aligned_cols=253 Identities=21% Similarity=0.268 Sum_probs=158.7
Q ss_pred HhCCcEEEecceeeccCCCC-----Cc-c--ceeecCC-CCceecccChhhHhhhccc-CCC---ceeEEEeceecCCCC
Q 008808 263 LSENFVEIHTPKLIAGSSEG-----GS-A--VFRLDYK-GQSACLAQSPQLHKQMSIC-GDF---GRVFETGPVFRAEDS 329 (553)
Q Consensus 263 ~~~gF~EV~TP~l~~~~~eg-----ga-~--~F~v~~~-~~~~~L~~SPql~lk~li~-~g~---~rVfeIg~~FR~E~~ 329 (553)
.+.+.+.|..|++....++- |. + .|.+..+ +..+-.-+|---||.+++. -|| +.+|.=....|..+.
T Consensus 28 ~~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~F~~k~~~~~~~eiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~ 107 (327)
T PRK05425 28 KKLNLIRVSAPLFVRVGSGLNDNLNGVEKPVSFKVKDLPDATFEVVHSLAKWKRLALKRYGFSAGEGLYTDMNAIRPDED 107 (327)
T ss_pred HhhCeeEecCCeEEcCCCCcccCCCCeecceEeeccCCCCCeeEEEeehHHHHHHHHHhcCCCCCceeccCCccccCCcc
Confidence 35799999999987533221 21 1 4556544 3567778898899998875 244 468888887776433
Q ss_pred CCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHHHHHH
Q 008808 330 YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKD 409 (553)
Q Consensus 330 ~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~~ 409 (553)
-+..|.-=--|-|||..+.. -+.-++.+.+.+..|+..+... -..+...||.. .+.+ ..|+|--.-+|++.
T Consensus 108 ld~~HS~yVDQWDWEkvI~~-~~Rn~~~Lk~tV~~Iy~~ik~t----e~~~~~~y~~~--~~Lp--~~i~FitsqeL~~~ 178 (327)
T PRK05425 108 LDNTHSVYVDQWDWEKVIGK-EERNLDYLKETVEKIYKAIKAT----EKAVSKKYPLL--PFLP--EEITFITSQELEDR 178 (327)
T ss_pred cCcccceEeccccHHHhCCc-cccCHHHHHHHHHHHHHHHHHH----HHHHHHhCccc--ccCC--CceEEecHHHHHHH
Confidence 48899877778888877653 3445555566666666555421 11223345432 2222 12333333232222
Q ss_pred cCCCCCCCCCCC-cHHHHHHhHHHHHHhCCccEEEeccCC------cCCCCCCcccCCCCcceeEEEEEe-----C-CEE
Q 008808 410 AGVEIDPLGDLN-TESERKLGQLVLEKYGTEFYILHRYPL------AVRPFYTMPCHDNSLYSNSFDVFI-----R-GEE 476 (553)
Q Consensus 410 ~g~~~~~~~dl~-~~~e~~l~~~v~~~~~~~~~ii~~~P~------~~~pfy~~~~~~~~~~~~~fdl~~-----~-G~E 476 (553)
. -+++ .+-|..+. .+++.=|.+=..++. ..|. |+-+ .+...=|+++ + ..|
T Consensus 179 Y-------P~l~~keRE~~i~----ke~gaVFi~~IG~~L~~g~~Hd~Ra----pDYD--DW~LNGDilvw~~~l~~a~E 241 (327)
T PRK05425 179 Y-------PDLTPKEREDAIA----KEYGAVFLIGIGGKLSDGKPHDGRA----PDYD--DWGLNGDILVWNPVLDDAFE 241 (327)
T ss_pred C-------CCCCHHHHHHHHH----HHhCcEEEEeccCcCCCCCcCCCCC----CCCc--CcccCceEEEEccccCceee
Confidence 2 1232 23344443 345542222223332 2221 2222 2444455554 2 489
Q ss_pred EeeceeccCCHHHHHHHHHHcC-CChhcHHHHHHHhhcC-CCCcceeeecHHHHHHHHcCCCCcccccc
Q 008808 477 IISGAQRIHIPEFLAERAQACG-IDVKTISTYIDSFRYG-APPHGGFGVGLERVVMLFCGLNNIRKTSL 543 (553)
Q Consensus 477 i~~G~~r~~d~~~l~~r~~~~g-~~~~~~~~yl~a~~~G-~pP~~G~GiGidRLvm~l~g~~nIrdv~~ 543 (553)
|.||+.|.+ ++.+.++++..| .+...+.+|+++ ..| +|||+|+|||+|||+|+|||+.+|.+|.+
T Consensus 242 LSSmGiRVd-~e~L~~Qlk~~g~~dr~~l~~h~~l-l~g~LP~TiGgGIGqsRL~M~LL~k~HIgEVq~ 308 (327)
T PRK05425 242 LSSMGIRVD-EEALKRQLKLTGDEDRLELEWHQAL-LNGELPLTIGGGIGQSRLCMLLLQKAHIGEVQA 308 (327)
T ss_pred ecCcceEec-HHHHHHHHHHcCCCccccCHHHHHH-HhCCCCCcccccccHHHHHHHHhccchhccccc
Confidence 999999999 999999999999 577788899999 778 99999999999999999999999999964
|
|
| >PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-12 Score=130.17 Aligned_cols=188 Identities=26% Similarity=0.411 Sum_probs=116.0
Q ss_pred HHHHHHHHHHhHhCCcEEEecceeecc---------CCCCCcc----ceeec--CC--CCceecc--cChhhHhhh-ccc
Q 008808 252 SQVGNIFRQFLLSENFVEIHTPKLIAG---------SSEGGSA----VFRLD--YK--GQSACLA--QSPQLHKQM-SIC 311 (553)
Q Consensus 252 s~i~~~iR~fl~~~gF~EV~TP~l~~~---------~~egga~----~F~v~--~~--~~~~~L~--~SPql~lk~-li~ 311 (553)
+.+++.||++|...||.||.+|.+.+. +.+.-|+ .|.+. +- .....|| +||-+..-+ .-.
T Consensus 20 ~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l~~~~ 99 (247)
T PF01409_consen 20 TKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRTLNKHR 99 (247)
T ss_dssp HHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHHHHHhc
Confidence 345778899999999999999998532 1222232 34441 11 4566677 455554333 113
Q ss_pred CCCceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCcccc
Q 008808 312 GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLK 390 (553)
Q Consensus 312 ~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~ 390 (553)
..--|+|+||+|||+|.. +.+|+|+|+|+|.-+... -++.++..+++.+++++|
T Consensus 100 ~~p~kif~iG~VyR~D~~-D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lf------------------------ 154 (247)
T PF01409_consen 100 PPPIKIFEIGKVYRRDEI-DATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELF------------------------ 154 (247)
T ss_dssp HSSEEEEEEEEEESSSCS-BSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHH------------------------
T ss_pred CCCeEEEecCceEecCCc-ccccCccceeEeeEEEecccchhHHHHHHHHHHHHHh------------------------
Confidence 345799999999999996 889999999999865432 134555544444444333
Q ss_pred CCCCCcccCHHHHHHHHHHcCCCCCCCCCCCcHHHHHHhHHHHHHhCCc--cEEEeccCCcCCCCCCcccCCCCcceeEE
Q 008808 391 YKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTE--FYILHRYPLAVRPFYTMPCHDNSLYSNSF 468 (553)
Q Consensus 391 ~~~~~~~i~~~ea~~ll~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~--~~ii~~~P~~~~pfy~~~~~~~~~~~~~f 468 (553)
+.+ +-+- | +-.|| +- | +-..
T Consensus 155 ----------------------------------------------G~~~~~r~~---p-s~fPf-te-----P--s~e~ 176 (247)
T PF01409_consen 155 ----------------------------------------------GIDVKVRFR---P-SYFPF-TE-----P--SREA 176 (247)
T ss_dssp ----------------------------------------------TTTEEEEEE---E-CEETT-EE-----E--EEEE
T ss_pred ----------------------------------------------hcccceEee---c-CCCCc-cc-----C--CeEE
Confidence 111 1111 1 11255 32 2 2346
Q ss_pred EEEe------CCEEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCcccc
Q 008808 469 DVFI------RGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKT 541 (553)
Q Consensus 469 dl~~------~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv 541 (553)
|+++ ++.||++++. -.|+.++ ..|+| + --|...||||||||+|+..|.++||+.
T Consensus 177 ~i~~~~~~~~~wiEvgg~G~--vhP~Vl~----~~gid-~------------~~~~~A~G~GleRlam~~~gi~diR~~ 236 (247)
T PF01409_consen 177 DIYCGVCKGGGWIEVGGCGM--VHPEVLE----NWGID-E------------EYPGFAFGLGLERLAMLKYGIPDIRLL 236 (247)
T ss_dssp EEEEECTTTTCEEEEEEEEE--E-HHHHH----HTT---T------------TSEEEEEEEEHHHHHHHHHT-SSGGHH
T ss_pred EEEEeeccCCCceEEeeccc--ccHhhhh----ccCcC-c------------cceEEEecCCHHHHHHHHcCCchHHHH
Confidence 7777 3479988766 6676663 33443 1 245678999999999999999999973
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B .... |
| >PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-12 Score=134.29 Aligned_cols=111 Identities=14% Similarity=0.232 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhHhCCcEEEecceeecc---------CCCCCcc----ceeecCCCCceecc--cChhhHhhhcccCCCce
Q 008808 252 SQVGNIFRQFLLSENFVEIHTPKLIAG---------SSEGGSA----VFRLDYKGQSACLA--QSPQLHKQMSICGDFGR 316 (553)
Q Consensus 252 s~i~~~iR~fl~~~gF~EV~TP~l~~~---------~~egga~----~F~v~~~~~~~~L~--~SPql~lk~li~~g~~r 316 (553)
+.++..||++|...||.|+.+|.|.+. +.+..|+ .|.+ +....|| +||-+..-|.-...--|
T Consensus 111 ~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI---~~~~lLRThTSp~qir~L~~~~~Pir 187 (339)
T PRK00488 111 TQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYI---DDGLLLRTHTSPVQIRTMEKQKPPIR 187 (339)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEE---cCCceeeccCcHHHHHHHHhcCCCeE
Confidence 456788899999999999999998631 1222232 3444 3444555 67766544332222349
Q ss_pred eEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHHHHHH
Q 008808 317 VFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTIF 366 (553)
Q Consensus 317 VfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll~~i~ 366 (553)
+|++|+|||++.. +.+|.|+|+|+|.-+... -++.++...++.+++.++
T Consensus 188 if~~G~VyR~D~~-DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~f 237 (339)
T PRK00488 188 IIAPGRVYRNDSD-DATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFF 237 (339)
T ss_pred EEEeeeEEEcCCC-CcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999985 889999999999744321 245666666665555544
|
|
| >TIGR00669 asnA aspartate--ammonia ligase, AsnA-type | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.6e-11 Score=120.09 Aligned_cols=270 Identities=19% Similarity=0.216 Sum_probs=160.1
Q ss_pred HHHHHHHHHHhH-----hCCcEEEecceeeccCCCC-----Cc-c--ceeecCC-CCceecccChhhHhhhccc-CCC--
Q 008808 252 SQVGNIFRQFLL-----SENFVEIHTPKLIAGSSEG-----GS-A--VFRLDYK-GQSACLAQSPQLHKQMSIC-GDF-- 314 (553)
Q Consensus 252 s~i~~~iR~fl~-----~~gF~EV~TP~l~~~~~eg-----ga-~--~F~v~~~-~~~~~L~~SPql~lk~li~-~g~-- 314 (553)
..-|..|++||. +.+.++|..|.++...++- |. + .|.+... +..+-.-+|---||.+++. -||
T Consensus 9 q~aI~~iK~~F~~~L~~~L~L~rVsAPLfv~~~sGlnD~LnG~ErpV~f~~k~~~~~~~evVhSLAKWKR~aL~~y~f~~ 88 (330)
T TIGR00669 9 QQQISFVKSTFTQQLEERLGLIEVQGPILSQVGDGTQDNLSGREKAVQVKVKAIPDAQFEVVHSLAKWKRHTLARHDFSA 88 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhCeEEeccceEEcCCCCCcCCCCCeecceEeecCCCCCceeEEehhhHHHHHHHHHhcCCCC
Confidence 334555555553 5799999999987533221 21 2 4555543 5777788898899988874 244
Q ss_pred -ceeEEEeceecC-CCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCC
Q 008808 315 -GRVFETGPVFRA-EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYK 392 (553)
Q Consensus 315 -~rVfeIg~~FR~-E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~ 392 (553)
+.+|.=....|. |..-+..|.-=--|-|||+.+.. -+.-++.+.+.+..|+..+... -..+...|+..+ +.
T Consensus 89 geGlytdMnAiR~De~~ldn~HS~yVDQWDWEkvI~~-~~R~~~~Lk~tV~~Iy~~ik~t----e~~~~~~y~l~~--~L 161 (330)
T TIGR00669 89 GEGLFVHMKALRPDEDRLDPLHSVYVDQWDWEKVMPD-GERNFAYLKSTVEAIYAAIRAT----EAAVSERFGLAP--FL 161 (330)
T ss_pred CceeeeccccccCCccccCccceeeeccccHHHhcCc-ccccHHHHHHHHHHHHHHHHHH----HHHHHHhcCccc--cC
Confidence 578887777776 55247889777778888877653 3455555555666665555421 111222232111 11
Q ss_pred CCCcccCHHHHHHHHHHcCCCCCCCCCCC-cHHHHHHhHHHHHHhCCccEEEeccC------CcCCCC-CCccc--CCCC
Q 008808 393 PKTLRLTFEEGVQMLKDAGVEIDPLGDLN-TESERKLGQLVLEKYGTEFYILHRYP------LAVRPF-YTMPC--HDNS 462 (553)
Q Consensus 393 ~~~~~i~~~ea~~ll~~~g~~~~~~~dl~-~~~e~~l~~~v~~~~~~~~~ii~~~P------~~~~pf-y~~~~--~~~~ 462 (553)
+ ..|+|--.-+|++.. -+++ .+-|..+. .+++.=|.+=..++ ...|.. |.-.. .++.
T Consensus 162 p--~~I~FitsqeL~~~Y-------P~lt~keRE~~i~----ke~gaVFi~~IG~~L~~G~~Hd~RApDYDDW~t~~~~~ 228 (330)
T TIGR00669 162 P--DQIHFVHSEELVSRY-------PDLDSKGRERAIC----KELGAVFLIGIGGKLSDGKPHDVRAPDYDDWTTPSELG 228 (330)
T ss_pred C--CceEEecHHHHHHHC-------CCCCHHHHHHHHH----HHhCcEEEEeccCcCCCCCcCCCCCCCccccccccccc
Confidence 1 233433333333322 1232 23344443 34554322222233 233221 11000 0011
Q ss_pred cceeEEEEEe------CCEEEeeceeccCCHHHHHHHHHHcC-CChhcHHHHHHHhhcC-CCCcceeeecHHHHHHHHcC
Q 008808 463 LYSNSFDVFI------RGEEIISGAQRIHIPEFLAERAQACG-IDVKTISTYIDSFRYG-APPHGGFGVGLERVVMLFCG 534 (553)
Q Consensus 463 ~~~~~fdl~~------~G~Ei~~G~~r~~d~~~l~~r~~~~g-~~~~~~~~yl~a~~~G-~pP~~G~GiGidRLvm~l~g 534 (553)
.....=|+++ +..||.|-+.|. |++.+.+|++..| .+...+.+|+++ ..| +|+|+|+|||+|||+|+|||
T Consensus 229 ~~gLNGDilvw~~vl~~a~ElSSMGIRV-d~~~L~~Qlk~~g~~dr~~l~~h~el-l~g~LP~TiGGGIGqsRL~MfLL~ 306 (330)
T TIGR00669 229 YKGLNGDILVWNPVLGDAFELSSMGIRV-DEDALRHQLALTGDEDRLELEWHQDL-LNGELPQTIGGGIGQSRLAMLLLQ 306 (330)
T ss_pred ccCcCceEEEEchhcCceeeeecceeEE-CHHHHHHHHHHcCCCccccCHHHHHH-HcCCCCccccccccHHHHHHHHhc
Confidence 1113345543 248999999996 6777888999888 677888999999 677 99999999999999999999
Q ss_pred CCCcccccc
Q 008808 535 LNNIRKTSL 543 (553)
Q Consensus 535 ~~nIrdv~~ 543 (553)
+.+|.+|..
T Consensus 307 k~HIgEVQ~ 315 (330)
T TIGR00669 307 LKHIGEVQA 315 (330)
T ss_pred cccccceee
Confidence 999999864
|
The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer. |
| >COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.4e-11 Score=123.81 Aligned_cols=111 Identities=15% Similarity=0.284 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhHhCCcEEEecceeecc---------CCCCCcc----ceeecCCCCceecc--cChhhHhhhcccCC-Cc
Q 008808 252 SQVGNIFRQFLLSENFVEIHTPKLIAG---------SSEGGSA----VFRLDYKGQSACLA--QSPQLHKQMSICGD-FG 315 (553)
Q Consensus 252 s~i~~~iR~fl~~~gF~EV~TP~l~~~---------~~egga~----~F~v~~~~~~~~L~--~SPql~lk~li~~g-~~ 315 (553)
..++..|+++|.+.||.|++.|-+.+. +-+..|+ .|.++.-....-|| +||=-...|.=-.. --
T Consensus 114 ~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~~~~~~lLRTHTs~vq~R~l~~~~~~P~ 193 (335)
T COG0016 114 TQTIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLKDDREKLLLRTHTSPVQARTLAENAKIPI 193 (335)
T ss_pred HHHHHHHHHHHHHcCceeccCCcccccccchhhhcCCCCCCcccccceEEEcCCCCceeecccCcHhhHHHHHhCCCCCc
Confidence 346788999999999999999965421 1111222 34333211113444 55533333221122 67
Q ss_pred eeEEEeceecCCCCCCCCCcCcccceeE-EeccccCHHHHHHHHHHHHH
Q 008808 316 RVFETGPVFRAEDSYTHRHLCEFTGLDV-EMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 316 rVfeIg~~FR~E~~~t~rHl~EFt~lE~-e~a~~~~~~~~m~~~e~ll~ 363 (553)
|+|.+|+|||++.. |.+|+|+|.|+|- .+.-.-++.+++-+++++++
T Consensus 194 k~~~~grvyR~D~~-DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~ 241 (335)
T COG0016 194 KIFSPGRVYRNDTV-DATHSPEFHQIEGLVVDKNISFADLKGTLEEFAK 241 (335)
T ss_pred eEecccceecCCCC-CcccchheeeeEEEEEeCCccHHHHHHHHHHHHH
Confidence 99999999999986 8999999999995 32222223444444444433
|
|
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.3e-11 Score=128.57 Aligned_cols=31 Identities=32% Similarity=0.450 Sum_probs=27.6
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEe
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEM 345 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~ 345 (553)
--|+|.||+|||+|.. |.+|+|||.|+|--.
T Consensus 342 p~k~fsigrVfR~d~i-DatH~~eFhQ~EG~v 372 (492)
T PLN02853 342 PKRYFSIDRVFRNEAV-DRTHLAEFHQVEGLV 372 (492)
T ss_pred CcEEEeccceecCCCC-CcccCccceeEEEEE
Confidence 4599999999999996 899999999999643
|
|
| >PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-10 Score=125.94 Aligned_cols=33 Identities=27% Similarity=0.305 Sum_probs=29.7
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEecc
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~ 347 (553)
--|+|.||+|||+|.. +.+|+|||+|+|..+.-
T Consensus 357 P~k~fsigrVfR~d~~-DatH~~eFhQ~Eg~vi~ 389 (494)
T PTZ00326 357 PKKYFSIDRVFRNETL-DATHLAEFHQVEGFVID 389 (494)
T ss_pred CceEEecCCEecCCCC-CCCcCceeEEEEEEEEe
Confidence 4699999999999997 89999999999998653
|
|
| >TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-09 Score=112.89 Aligned_cols=108 Identities=18% Similarity=0.262 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhHhCCcEEEecceeeccC-------CCC--Cc----cceeecCCCCceecccChhhHhhhcccCCC---
Q 008808 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGS-------SEG--GS----AVFRLDYKGQSACLAQSPQLHKQMSICGDF--- 314 (553)
Q Consensus 251 Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~-------~eg--ga----~~F~v~~~~~~~~L~~SPql~lk~li~~g~--- 314 (553)
...+.+.+|++|...||.|+.||.+.+.. .+. .| +.|.+. ....||+|----+=..+....
T Consensus 74 ~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~---d~~vLRtsl~p~ll~~l~~N~~~p 150 (294)
T TIGR00468 74 LTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIK---DRLLLRTHTTAVQLRTMEENEKPP 150 (294)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeec---CCcceecccHHHHHHHHHhcCCCC
Confidence 35567788999999999999999997531 010 00 123332 344566443222222333333
Q ss_pred ceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHH
Q 008808 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLF 362 (553)
Q Consensus 315 ~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll 362 (553)
-|+||||+|||++.. +.+|+|||++|+.-+... -++.++..+++.++
T Consensus 151 irlFEiGrVfr~d~~-d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll 198 (294)
T TIGR00468 151 IRIFSPGRVFRNDTV-DATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFL 198 (294)
T ss_pred ceEEEecceEEcCCC-CCccCChhhEEEEEEECCCCCHHHHHHHHHHHH
Confidence 599999999999875 678999999999875421 14555555554444
|
Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment. |
| >PLN02788 phenylalanine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.4e-09 Score=110.69 Aligned_cols=91 Identities=14% Similarity=0.223 Sum_probs=58.4
Q ss_pred HHHHHHHHhHhC---CcEEEe--cceeecc--------CCCCCccce-eecCCCCceecc--cChhhHhhhcccCCCcee
Q 008808 254 VGNIFRQFLLSE---NFVEIH--TPKLIAG--------SSEGGSAVF-RLDYKGQSACLA--QSPQLHKQMSICGDFGRV 317 (553)
Q Consensus 254 i~~~iR~fl~~~---gF~EV~--TP~l~~~--------~~egga~~F-~v~~~~~~~~L~--~SPql~lk~li~~g~~rV 317 (553)
+++.|+++|... ||.+++ .|+.... +.+..|+.- -+-|.+...-|| +|+-..- +|..+-.|+
T Consensus 73 ~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~~~~lLRTHTSa~q~~--~l~~~~~~~ 150 (402)
T PLN02788 73 LKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVDAQTVLRCHTSAHQAE--LLRAGHTHF 150 (402)
T ss_pred HHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEecCCccccCCCcHHHHH--HHHhCCCcE
Confidence 456678888886 999998 4543211 112223211 122445555665 4543222 223456799
Q ss_pred EEEeceecCCCCCCCCCcCcccceeEEecc
Q 008808 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347 (553)
Q Consensus 318 feIg~~FR~E~~~t~rHl~EFt~lE~e~a~ 347 (553)
+.+|+|||++.+ |.+|.|+|.|+|--+.+
T Consensus 151 ~~~g~VyRrD~i-D~tH~p~FhQ~EG~~v~ 179 (402)
T PLN02788 151 LVTGDVYRRDSI-DATHYPVFHQMEGVRVF 179 (402)
T ss_pred EEEeeEeecCCC-CcccCccceeEEEEEEe
Confidence 999999999997 89999999999987654
|
|
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.1e-09 Score=114.07 Aligned_cols=99 Identities=19% Similarity=0.224 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeecc---------CCCCCc----cceeecC-----------------------
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAG---------SSEGGS----AVFRLDY----------------------- 291 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~---------~~egga----~~F~v~~----------------------- 291 (553)
......+++.||+.|...||.||+||.+.+. +....| +.|.++.
T Consensus 232 ~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~he~g~~ 311 (489)
T PRK04172 232 KHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEVHEHGGD 311 (489)
T ss_pred CChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHHHhccCC
Confidence 3457788999999999999999999998642 001111 1222211
Q ss_pred -------------CCCceecccChhhHhhhccc---CCCceeEEEeceecCCCCCCCCCcCcccceeEEecc
Q 008808 292 -------------KGQSACLAQSPQLHKQMSIC---GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347 (553)
Q Consensus 292 -------------~~~~~~L~~SPql~lk~li~---~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~ 347 (553)
.+....||..-=-..-++++ ..--|+||||+|||+|.. +..|++||+||+..+..
T Consensus 312 ~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~-d~~~l~Ef~ql~~~i~G 382 (489)
T PRK04172 312 TGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTI-DATHLPEFYQLEGIVMG 382 (489)
T ss_pred CCCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCC-CcccCCchheEEEEEEe
Confidence 01234555221111111122 123599999999999986 67889999999998764
|
|
| >cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.9e-08 Score=99.61 Aligned_cols=99 Identities=20% Similarity=0.299 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEecceeeccCC-------CCCccceee-cCCCCceeccc--ChhhHhh---hccc-CCC
Q 008808 249 RIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-------EGGSAVFRL-DYKGQSACLAQ--SPQLHKQ---MSIC-GDF 314 (553)
Q Consensus 249 ~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-------egga~~F~v-~~~~~~~~L~~--SPql~lk---~li~-~g~ 314 (553)
+++..|.+.+++.|.+.||.||.||.|..... ......|.+ +-.|..+.||- .|++..- .... ...
T Consensus 3 ~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~~~~p 82 (261)
T cd00773 3 ALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLSLPLP 82 (261)
T ss_pred HHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCccCCCC
Confidence 57889999999999999999999999965321 112235665 34577888883 3333321 1111 234
Q ss_pred ceeEEEeceecCCCCCCCCCcCcccceeEEeccc
Q 008808 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK 348 (553)
Q Consensus 315 ~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~ 348 (553)
-|+|++|+|||+|.. ...|.-||+|+++|+-..
T Consensus 83 ~k~~y~g~vfR~e~~-~~g~~re~~Q~g~Eiig~ 115 (261)
T cd00773 83 LKLYYIGPVFRYERP-QKGRYREFYQVGVEIIGS 115 (261)
T ss_pred eEEEEEcCEEecCCC-CCCCccceEEeceeeeCC
Confidence 599999999999986 466889999999998544
|
HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain. |
| >PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-08 Score=81.68 Aligned_cols=75 Identities=27% Similarity=0.406 Sum_probs=63.0
Q ss_pred EEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEE
Q 008808 107 VLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQ 186 (553)
Q Consensus 107 V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~ 186 (553)
|+|.|||++++..|++++|+.|+|+++.|||++.. +.+..+...|..|++|.|+|.+..... ++++|.
T Consensus 1 V~v~G~V~~~~~~~~~~~~~~l~D~tg~i~~~~~~------~~~~~~~~~l~~g~~v~v~G~v~~~~~------~~~~l~ 68 (75)
T PF01336_consen 1 VTVEGRVTSIRRSGGKIVFFTLEDGTGSIQVVFFN------EEYERFREKLKEGDIVRVRGKVKRYNG------GELELI 68 (75)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET------HHHHHHHHTS-TTSEEEEEEEEEEETT------SSEEEE
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEECCccEEEEEcc------HHhhHHhhcCCCCeEEEEEEEEEEECC------ccEEEE
Confidence 78999999995555599999999999999999987 245677889999999999999987641 259999
Q ss_pred EeEEEEe
Q 008808 187 IKKLYCV 193 (553)
Q Consensus 187 v~~i~~l 193 (553)
+.++++|
T Consensus 69 ~~~i~~l 75 (75)
T PF01336_consen 69 VPKIEIL 75 (75)
T ss_dssp EEEEEEE
T ss_pred ECEEEEC
Confidence 9999876
|
The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A .... |
| >TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.9e-08 Score=102.07 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=36.1
Q ss_pred CCceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHHH
Q 008808 313 DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFV 363 (553)
Q Consensus 313 g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll~ 363 (553)
.--|+|+||+|||+|...+.+|+++|.|+|.-++-. -++.|++.+++.|++
T Consensus 206 ~PiRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr 257 (533)
T TIGR00470 206 LPLKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLA 257 (533)
T ss_pred CCeEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHH
Confidence 356999999999999644779999999999754422 234555555555444
|
This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys. |
| >TIGR00442 hisS histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-06 Score=93.38 Aligned_cols=102 Identities=19% Similarity=0.230 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----C--CCC----ccceee-cCCCCceecc--cChhhHhhhcc--
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----S--EGG----SAVFRL-DYKGQSACLA--QSPQLHKQMSI-- 310 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~--egg----a~~F~v-~~~~~~~~L~--~SPql~lk~li-- 310 (553)
.-.+++..+.+.+++.|.+.||.||.||++.... . +.. ...|.+ +..|+.+.|| ..|++....+-
T Consensus 12 ~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~~~~ 91 (397)
T TIGR00442 12 EEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGGRSLTLRPEGTAPVARAVIENK 91 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCCCEEeecCCCcHHHHHHHHhcc
Confidence 3457888999999999999999999999995321 1 110 234554 3467777887 33444322110
Q ss_pred -c-CCCceeEEEeceecCCCCCCCCCcCcccceeEEeccc
Q 008808 311 -C-GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK 348 (553)
Q Consensus 311 -~-~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~ 348 (553)
. ..--|+|++|+|||+|.. ...|.-||+|+++|.-..
T Consensus 92 ~~~~~p~r~~y~g~vfR~e~~-~~gr~ref~Q~g~eiig~ 130 (397)
T TIGR00442 92 LLLPKPFKLYYIGPMFRYERP-QKGRYRQFHQFGVEVIGS 130 (397)
T ss_pred cccCCCeEEEEEcCeecCCCC-CCCcccceEEcCeeeeCC
Confidence 0 113599999999999986 344669999999997544
|
This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff. |
| >TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.1e-06 Score=89.38 Aligned_cols=116 Identities=21% Similarity=0.180 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC------CCCccceee-cCCCCceecc--cChhhHhhhccc-----C
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS------EGGSAVFRL-DYKGQSACLA--QSPQLHKQMSIC-----G 312 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~------egga~~F~v-~~~~~~~~L~--~SPql~lk~li~-----~ 312 (553)
-.+++..|.+.+++.|.+.||.||+||++..... +.....|.+ +.-|..+.|| ..|++..- +.. .
T Consensus 7 ~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~-~~~~~~~~~ 85 (314)
T TIGR00443 7 EAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGGILNEDLFKLFDSLGRVLGLRPDMTTPIARA-VSTRLRDRP 85 (314)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCCcchhceEEEECCCCCEEeecCcCcHHHHHH-HHHhcccCC
Confidence 3567889999999999999999999999854211 112235654 3357778887 34554332 211 1
Q ss_pred CCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCH---HHHHHHHHHHHHH
Q 008808 313 DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVT 364 (553)
Q Consensus 313 g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~---~~~m~~~e~ll~~ 364 (553)
..-|+|++|+|||.|.. ..-+.-||+|+.+|.-..++. -|++.++-+.+..
T Consensus 86 ~p~r~~y~g~VfR~~~~-~~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~~~l~~ 139 (314)
T TIGR00443 86 LPLRLCYAGNVFRTNES-GAGRSREFTQAGVELIGAGGPAADAEVIALLIEALKA 139 (314)
T ss_pred CCeEEEEeceEeecCCC-cCCCcccccccceEEeCCCCchhHHHHHHHHHHHHHH
Confidence 24699999999999986 455678999999996433222 2555555554443
|
Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit. |
| >TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.3e-06 Score=93.63 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=36.4
Q ss_pred CCCCceecc--cChhhHhhhcccCCCc-------eeEEEeceecCCCCCCCCCcCcccceeEEec
Q 008808 291 YKGQSACLA--QSPQLHKQMSICGDFG-------RVFETGPVFRAEDSYTHRHLCEFTGLDVEME 346 (553)
Q Consensus 291 ~~~~~~~L~--~SPql~lk~li~~g~~-------rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a 346 (553)
|.+...-|| +|+-.- .+|-.+.+ ++...|.|||.+.+ |.+|.|-|.|+|--+.
T Consensus 103 Yi~~~~lLRTHTSa~q~--~~~~~~~~~~~~~~~~~i~~G~VYRrD~i-DatH~p~FHQ~EG~~v 164 (460)
T TIGR00469 103 YINEQHLLRAHTSAHEL--ECFQGGLDDSDNIKSGFLISADVYRRDEI-DKTHYPVFHQADGAAI 164 (460)
T ss_pred EecCCceeCCCCcHHHH--HHHHhccccCCCcceeeEeecceeeCCCC-ccccCccceeeEEEEE
Confidence 455666676 555322 22333332 48899999999997 8999999999995443
|
Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species. |
| >cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.7e-07 Score=89.38 Aligned_cols=107 Identities=16% Similarity=0.253 Sum_probs=74.3
Q ss_pred HHHHHHHHHhHhCCcEEEecceeeccCCCCCc-------------cceeecCCCCceecccC--hhhHhhhcccC--CCc
Q 008808 253 QVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS-------------AVFRLDYKGQSACLAQS--PQLHKQMSICG--DFG 315 (553)
Q Consensus 253 ~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga-------------~~F~v~~~~~~~~L~~S--Pql~lk~li~~--g~~ 315 (553)
++.+.+|++|...||.||.|+.+++....-.. ..+.+.-. ...+||.| |.|.. .++- .--
T Consensus 5 ~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP-~~~~LR~sLlp~LL~--~l~~N~~~~ 81 (218)
T cd00496 5 KVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDP-ARLLLRTHTSAVQAR--ALAKLKPPI 81 (218)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEECCC-ceEEEeccCcHHHHH--HHHhcCCCe
Confidence 45667899999999999999999754111000 11222100 03567644 55543 3343 456
Q ss_pred eeEEEeceecCCCCCCCCCcCcccceeEEecccc-CHHHHHHHHHHHHH
Q 008808 316 RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVMDIVDRLFV 363 (553)
Q Consensus 316 rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~-~~~~~m~~~e~ll~ 363 (553)
|+||||+|||++.. +.+|+|||++|.+.++... ++.|++.+++.++.
T Consensus 82 ~lFEiG~Vf~~~~~-~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~ 129 (218)
T cd00496 82 RIFSIGRVYRNDEI-DATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAK 129 (218)
T ss_pred eEEEEcCeEECCCC-CCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999999999875 5578999999999988641 68999999888885
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. |
| >PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.5e-06 Score=84.93 Aligned_cols=112 Identities=20% Similarity=0.338 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCC---CCccceee-cCCCCceecc--cChhhHhhhcc----cCCCce
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE---GGSAVFRL-DYKGQSACLA--QSPQLHKQMSI----CGDFGR 316 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~e---gga~~F~v-~~~~~~~~L~--~SPql~lk~li----~~g~~r 316 (553)
-.+.+..|.+.+++.|...||-||+||++.-...- .....|.+ +.-|+.+.|| ..+++..-.+- ....-|
T Consensus 18 e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~~D~~g~~l~LRpD~T~~iaR~~a~~~~~~~~p~r 97 (281)
T PRK12293 18 SAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSIADEKELIRFSDEKNHQISLRADSTLDVVRIVTKRLGRSTEHKK 97 (281)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcccchhceEEEECCCCCEEEECCcCCHHHHHHHHHhcccCCCcee
Confidence 34578888999999999999999999999643221 12235654 3356677777 33443322110 112349
Q ss_pred eEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHH
Q 008808 317 VFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365 (553)
Q Consensus 317 VfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i 365 (553)
.|.+|+|||.|. .||+|+.+|+-..++..|++.++-+.+..+
T Consensus 98 ~~Y~g~vfR~~~-------rEf~Q~GvEliG~~~~~Evi~la~~~l~~l 139 (281)
T PRK12293 98 WFYIQPVFRYPS-------NEIYQIGAELIGEEDLSEILNIAAEIFEEL 139 (281)
T ss_pred EEEeccEEecCC-------CcccccCeEeeCCCCHHHHHHHHHHHHHHc
Confidence 999999999874 599999999887777666666655554433
|
|
| >PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.1e-05 Score=84.40 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC---CCCc----cceeec-C-CCCceecc--cChhhHh---hhcccC
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGGS----AVFRLD-Y-KGQSACLA--QSPQLHK---QMSICG 312 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egga----~~F~v~-~-~~~~~~L~--~SPql~l---k~li~~ 312 (553)
-.+.+..|.+.+++.|...||.||+||++.-... ..|. ..|.+. . -|..+.|| ..+++.. ..+-..
T Consensus 20 e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~ 99 (392)
T PRK12421 20 EAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQLSGRLMGVRADITPQVARIDAHLLNRE 99 (392)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCCCCcEEEECCcCCHHHHHHHHhhcCCC
Confidence 4567888999999999999999999999853211 1111 245543 2 35666676 3334332 111012
Q ss_pred CCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHH---HHHHHHHHHHHHH
Q 008808 313 DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYS---EVMDIVDRLFVTI 365 (553)
Q Consensus 313 g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~---~~m~~~e~ll~~i 365 (553)
..-|.|.+|+|||.+.....| .-||+|+.+|.-..++.. |++.++-+.+..+
T Consensus 100 ~p~R~~Y~g~VfR~~~~~~gr-~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~l 154 (392)
T PRK12421 100 GVARLCYAGSVLHTLPQGLFG-SRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNA 154 (392)
T ss_pred CceEEEEeeeEEEcCCCcCCC-cCccceeceEEeCCCCchhHHHHHHHHHHHHHHc
Confidence 346999999999998754344 479999999975544433 6676666665544
|
|
| >CHL00201 syh histidine-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.3e-05 Score=85.10 Aligned_cols=101 Identities=21% Similarity=0.312 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----CCC-C-----ccceee-cCCCCceecc--cChhhHh---hhcc
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEG-G-----SAVFRL-DYKGQSACLA--QSPQLHK---QMSI 310 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~eg-g-----a~~F~v-~~~~~~~~L~--~SPql~l---k~li 310 (553)
-...+..|.+.+|+.|...||-||.||++.... .-| . ...|.+ +.-|..+.|| ..|.+.. +...
T Consensus 17 ~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~g~~l~LRpd~T~~iaR~~~~~~~ 96 (430)
T CHL00201 17 EINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSNRDITLRPEGTAGIVRAFIENKM 96 (430)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCCCCEEEeCCCCcHHHHHHHHHccc
Confidence 345788999999999999999999999995421 111 1 235554 3346778887 3344332 1111
Q ss_pred cC-C-CceeEEEeceecCCCCCCCCCcCcccceeEEeccc
Q 008808 311 CG-D-FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK 348 (553)
Q Consensus 311 ~~-g-~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~ 348 (553)
.. . .-|.|++|+|||+|.....|- -||||+++|.-..
T Consensus 97 ~~~~~p~R~~y~g~vfR~e~~q~GR~-Ref~Q~g~EiiG~ 135 (430)
T CHL00201 97 DYHSNLQRLWYSGPMFRYERPQSGRQ-RQFHQLGIEFIGS 135 (430)
T ss_pred cccCCCeEEEEEcceecCCCCcCCcc-ceeEEeceEEECC
Confidence 11 2 349999999999998654553 6999999997543
|
|
| >PLN02972 Histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.5e-06 Score=93.07 Aligned_cols=119 Identities=13% Similarity=0.202 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC------CCCCccceee-cCCCCceecccChhhHhhhcccC---CC
Q 008808 245 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS------SEGGSAVFRL-DYKGQSACLAQSPQLHKQMSICG---DF 314 (553)
Q Consensus 245 ~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~------~egga~~F~v-~~~~~~~~L~~SPql~lk~li~~---g~ 314 (553)
-.-..+|..|...+++.|...||.||+||++.... .+.....|.+ +.-|+.+.||---=.-.=++++. ..
T Consensus 338 P~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~f~D~gGr~LaLRPDlTvPiAR~vA~n~~~p 417 (763)
T PLN02972 338 KEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGITS 417 (763)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcchhheEEEECCCCCEEEeCCCChHHHHHHHHhCCCCc
Confidence 45567899999999999999999999999985321 1111124554 33566677762221111122221 12
Q ss_pred ceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cC---HHHHHHHHHHHHHH
Q 008808 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KH---YSEVMDIVDRLFVT 364 (553)
Q Consensus 315 ~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~---~~~~m~~~e~ll~~ 364 (553)
-|.|+||+|||.|.. ..-+.-||+|+++|.... +. =-|++.++-+.+..
T Consensus 418 ~KrYyiG~VFR~e~p-qkGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~ 470 (763)
T PLN02972 418 FKRYQIAKVYRRDNP-SKGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDE 470 (763)
T ss_pred ceEEEeccEEecCCC-CCCCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHh
Confidence 478889999999975 334568999999998643 11 14566666665544
|
|
| >PLN02530 histidine-tRNA ligase | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.8e-06 Score=90.64 Aligned_cols=115 Identities=17% Similarity=0.221 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCCc----cceee-cCCCCceecc--cChhhHhhhcccC---
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGS----AVFRL-DYKGQSACLA--QSPQLHKQMSICG--- 312 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egga----~~F~v-~~~~~~~~L~--~SPql~lk~li~~--- 312 (553)
.-.+++..|.+.+|+.|...||.||.||+|.... ...|. ..|.+ +.-|+.+.|| ..|++. ++++.
T Consensus 82 ~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~D~~g~~l~LRpD~T~~ia--R~~~~~~~ 159 (487)
T PLN02530 82 EDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQLYNFEDKGGRRVALRPELTPSLA--RLVLQKGK 159 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcccccceEEEECCCCCEEecCCCCcHHHH--HHHHhccc
Confidence 4456789999999999999999999999996421 01111 24553 3456777777 333333 22221
Q ss_pred ---CCceeEEEeceecCCCCCCCCCcCcccceeEEeccccC---HHHHHHHHHHHHH
Q 008808 313 ---DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKH---YSEVMDIVDRLFV 363 (553)
Q Consensus 313 ---g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~---~~~~m~~~e~ll~ 363 (553)
-.-|.|++|+|||.|..... +.-||+|+++|.-..++ -.|++.++.+.+.
T Consensus 160 ~~~~P~r~~y~g~vfR~e~~q~g-r~REf~Q~giEiiG~~~~~aDaEvi~l~~~~l~ 215 (487)
T PLN02530 160 SLSLPLKWFAIGQCWRYERMTRG-RRREHYQWNMDIIGVPGVEAEAELLAAIVTFFK 215 (487)
T ss_pred ccCCCeEEEEEcCEEcCcCCCCC-CccceEEcCeeEeCCCCcchhHHHHHHHHHHHH
Confidence 12499999999999985333 45799999999754322 1345555444443
|
|
| >PRK12420 histidyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.5e-06 Score=89.24 Aligned_cols=115 Identities=20% Similarity=0.290 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC--C---CCCc----cceee-cCCCCceecc--cChhhHhhhcccC--
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS--S---EGGS----AVFRL-DYKGQSACLA--QSPQLHKQMSICG-- 312 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~--~---egga----~~F~v-~~~~~~~~L~--~SPql~lk~li~~-- 312 (553)
-..++..|.+.+++.|...||.||.||+|.... . ..+. ..|.+ +.-|+.+.|| ..+++.. +++.
T Consensus 17 ~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g~~l~LRpD~T~~iaR--~va~~~ 94 (423)
T PRK12420 17 EQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGKRDLALRYDLTIPFAK--VVAMNP 94 (423)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCCceecccccccHHHHH--HHHhCc
Confidence 456788899999999999999999999996421 1 1111 24553 3356777777 2333322 2221
Q ss_pred --CCc-eeEEEeceecCCCCCCCCCcCcccceeEEeccccCH---HHHHHHHHHHHHH
Q 008808 313 --DFG-RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVT 364 (553)
Q Consensus 313 --g~~-rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~---~~~m~~~e~ll~~ 364 (553)
... |.|++|+|||.|.. ..-+.-||+|+.+|.-..++. -|++.++-+.+..
T Consensus 95 ~~~~p~r~~y~g~vfR~~~~-~~gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~ 151 (423)
T PRK12420 95 NIRLPFKRYEIGKVFRDGPI-KQGRFREFIQCDVDIVGVESVMAEAELMSMAFELFRR 151 (423)
T ss_pred CCCCCeeEEEEcceECCCCC-CCCccceeEECCeeeECCCCCcccHHHHHHHHHHHHH
Confidence 122 89999999999975 344678999999997433221 4566655555443
|
|
| >PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.3e-06 Score=87.51 Aligned_cols=117 Identities=20% Similarity=0.183 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----C---CCCccceee-cC-CCCceecc--cChhhHhhhcccC--
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----S---EGGSAVFRL-DY-KGQSACLA--QSPQLHKQMSICG-- 312 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~---egga~~F~v-~~-~~~~~~L~--~SPql~lk~li~~-- 312 (553)
.-.+.+..+.+.+++.|...||.||.||++.... . +.....|.+ +. -|..+.|| ..+++.. +++.
T Consensus 15 ~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~~g~~l~LRpD~T~~iaR--~~a~~~ 92 (391)
T PRK12292 15 EEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQLSGRTLGLRPDMTAQIAR--IAATRL 92 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecCCCCEEEECCCCcHHHHH--HHHHhc
Confidence 3456788999999999999999999999995321 1 111225554 33 46777887 3444432 2221
Q ss_pred ----CCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCH---HHHHHHHHHHHHHH
Q 008808 313 ----DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVTI 365 (553)
Q Consensus 313 ----g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~---~~~m~~~e~ll~~i 365 (553)
..-|+|.+|+|||.|.. ..-+.-||+|+.+|.-..++. -|++.++-+.+..+
T Consensus 93 ~~~~~p~r~~y~g~vfR~~~~-~~gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~l 151 (391)
T PRK12292 93 ANRPGPLRLCYAGNVFRAQER-GLGRSREFLQSGVELIGDAGLEADAEVILLLLEALKAL 151 (391)
T ss_pred cCCCCCeEEEeeceeeecCCC-cCCCccchhccceEEeCCCCchHHHHHHHHHHHHHHHc
Confidence 23499999999999975 344568999999998543332 45666655555443
|
|
| >PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-06 Score=82.64 Aligned_cols=116 Identities=18% Similarity=0.269 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhH-hCCcEEEecceeeccCC---CCC-----ccceeecCCC-CceecccChhhHh-----hhccc-C-
Q 008808 250 IQSQVGNIFRQFLL-SENFVEIHTPKLIAGSS---EGG-----SAVFRLDYKG-QSACLAQSPQLHK-----QMSIC-G- 312 (553)
Q Consensus 250 ~Rs~i~~~iR~fl~-~~gF~EV~TP~l~~~~~---egg-----a~~F~v~~~~-~~~~L~~SPql~l-----k~li~-~- 312 (553)
++.+|++.+++.+. +.||.||.||.|..... -|. ...|.+.--+ ..++|+-+.+... ..... .
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~~ 80 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRGDEEYCLRPTSEPGIYSLFKNEIRSSYR 80 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETTTEEEEE-SSSHHHHHHHHHHHEEBHGG
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeecccccEEeccccccceeeeecceeeeccc
Confidence 57889999999999 99999999999975321 111 2255554333 5689987665432 22222 1
Q ss_pred -CCceeEEEeceecCCC--CCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHH
Q 008808 313 -DFGRVFETGPVFRAED--SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFD 367 (553)
Q Consensus 313 -g~~rVfeIg~~FR~E~--~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~ 367 (553)
--=|+|+||+|||+|. ..+...+-||+|.|++.. ..+ ++..+..++++..+..
T Consensus 81 ~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f-~~~-~~~~~~~~~~~~~~~~ 136 (173)
T PF00587_consen 81 DLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIF-CTP-EQSEEEFEELLELYKE 136 (173)
T ss_dssp GSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEE-ESS-HHHHHHHHHHHHHHHH
T ss_pred cCCeEEeecccccccccccccccceeeEeeeeceEEE-eCC-cccHHHHHHHHHHHHH
Confidence 1349999999999993 234667889999999965 445 7877777777665443
|
seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B .... |
| >COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.18 E-value=8e-05 Score=80.20 Aligned_cols=118 Identities=20% Similarity=0.256 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCC---CCcc-------ceeec-CCCCceecc---cChh--hHhhh-c
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE---GGSA-------VFRLD-YKGQSACLA---QSPQ--LHKQM-S 309 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~e---gga~-------~F~v~-~~~~~~~L~---~SPq--l~lk~-l 309 (553)
=+..+..|...+|+-+..-||.||.||++-....- .|.. .|... --|+.+.|| ++|= .+.+- +
T Consensus 17 d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRpe~Tapv~R~~~en~~ 96 (429)
T COG0124 17 DMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRPELTAPVARAVAENKL 96 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEecccCcHHHHHHHHhccc
Confidence 35678889999999999999999999988532110 1211 23222 246777777 4442 22211 2
Q ss_pred ccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCH---HHHHHHHHHHHHHH
Q 008808 310 ICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVTI 365 (553)
Q Consensus 310 i~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~---~~~m~~~e~ll~~i 365 (553)
...-.-|.|.+|||||.|.....|- =||+||++|.--..+. -|++.++.+++..+
T Consensus 97 ~~~~p~k~yy~g~vfRyErPQ~GR~-RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~l 154 (429)
T COG0124 97 DLPKPLKLYYFGPVFRYERPQKGRY-RQFYQFGVEVIGSDSPDADAEVIALAVEILEAL 154 (429)
T ss_pred cccCCeeEEEecceecCCCCCCCCc-eeeEEcCeEEeCCCCcccCHHHHHHHHHHHHHc
Confidence 2223569999999999998766665 7999999997543221 46666666665544
|
|
| >cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.1e-05 Score=77.95 Aligned_cols=113 Identities=15% Similarity=0.126 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCCc-----cceeecCC-----CCceecccChhhH-----hhhcc
Q 008808 249 RIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGS-----AVFRLDYK-----GQSACLAQSPQLH-----KQMSI 310 (553)
Q Consensus 249 ~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egga-----~~F~v~~~-----~~~~~L~~SPql~-----lk~li 310 (553)
+++..|.+.+++.|...||.||.||.|.... ..+.. ..|.+..- +..++||-.-... .+...
T Consensus 3 ~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~~ 82 (235)
T cd00670 3 ALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEIL 82 (235)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccCc
Confidence 5788999999999999999999999997532 11111 24444332 4678887444322 22222
Q ss_pred c-CC-CceeEEEeceecCCCCC--CCCCcCcccceeEEeccccCHHHHHHHHHHHHH
Q 008808 311 C-GD-FGRVFETGPVFRAEDSY--THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 311 ~-~g-~~rVfeIg~~FR~E~~~--t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
. .. --|+|++|+|||+|.+. ...-.-||+|.|++.-.. . ++..+...+++.
T Consensus 83 ~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~-~-~~~~~~~~e~~~ 137 (235)
T cd00670 83 SYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGE-P-EEAEEERREWLE 137 (235)
T ss_pred cchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcC-H-HHHHHHHHHHHH
Confidence 1 12 34899999999999863 123457999999997532 2 234444444443
|
This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00055 Score=67.37 Aligned_cols=267 Identities=19% Similarity=0.237 Sum_probs=139.1
Q ss_pred HHHHHHh-HhCCcEEEecceeeccCCC-----CCcc---ceeecCC-CCceecccChhhHhhhccc----CCCceeEEEe
Q 008808 256 NIFRQFL-LSENFVEIHTPKLIAGSSE-----GGSA---VFRLDYK-GQSACLAQSPQLHKQMSIC----GDFGRVFETG 321 (553)
Q Consensus 256 ~~iR~fl-~~~gF~EV~TP~l~~~~~e-----gga~---~F~v~~~-~~~~~L~~SPql~lk~li~----~g~~rVfeIg 321 (553)
+.|..+| ...|.+||..|+|...... .|.+ .|.|.-. +..+-.-.|---||.+.++ +.-+.+|.=.
T Consensus 17 n~Ft~~l~~~L~lieVq~Pils~vg~G~qDnLsg~ekaVsv~vk~~p~a~fEvVhSLAKWKR~tL~r~~f~~~eGlythM 96 (330)
T COG2502 17 NTFTQHLEERLGLIEVQAPILSRVGDGLQDNLSGTEKAVSVKVKKLPDATFEVVHSLAKWKRHTLARYGFSAGEGLYTHM 96 (330)
T ss_pred HHHHHHHHHhcCeEEeecceEeccCCcccccccccccceEEEEeecCCchhhhhHHHHHHHHHHHHhcCCcCCCceeeec
Confidence 3344444 3579999999999642110 1221 3444332 2234455677777777663 2236789999
Q ss_pred ceecC-CCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCH
Q 008808 322 PVFRA-EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTF 400 (553)
Q Consensus 322 ~~FR~-E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~ 400 (553)
+..|. |++-+..|.-=--|-|||..+. +-..-++.+.+.+..|...+... + ..+...|+... |.+ ..|+|
T Consensus 97 ~AlRpDeD~ld~~HSvYVDQWDWEkvi~-~g~rNl~yLK~tV~kIY~~ir~t---e-~av~~~~~~~~--~LP--~~ItF 167 (330)
T COG2502 97 KALRPDEDRLDPIHSVYVDQWDWEKVIP-DGDRNLAYLKSTVEKIYAAIRET---E-LAVSAEFGLAP--FLP--DQITF 167 (330)
T ss_pred hhcCCCcccccchheEEecccchhhhcC-CccccHHHHHHHHHHHHHHHHHH---H-HHHHHhcCCcc--cCc--cceEE
Confidence 99996 5555778865555566665443 22333333444444444333311 1 12222333211 111 23444
Q ss_pred HHHHHHHHHcCCCCCCCCCCC-cHHHHHHhHHHHHHhCCccEEE------eccCCcCC-CCCCccc-CCCCcc-eeEEEE
Q 008808 401 EEGVQMLKDAGVEIDPLGDLN-TESERKLGQLVLEKYGTEFYIL------HRYPLAVR-PFYTMPC-HDNSLY-SNSFDV 470 (553)
Q Consensus 401 ~ea~~ll~~~g~~~~~~~dl~-~~~e~~l~~~v~~~~~~~~~ii------~~~P~~~~-pfy~~~~-~~~~~~-~~~fdl 470 (553)
-..-++.... - ||+ ..-|..+.+ .++.-|.+= +.+|...| |=|.-.. ++..++ ...=|+
T Consensus 168 ihseeL~~ry-P------~L~~k~RE~ai~K----e~gAvFligIGg~LsdG~~hd~RaPdYDdWtt~se~~~~gLNGDi 236 (330)
T COG2502 168 IHSQELVARY-P------DLDPKGRERAIAK----ELGAVFLIGIGGKLSDGKPHDVRAPDYDDWTTPSELGYKGLNGDI 236 (330)
T ss_pred eehHHHHHhC-C------CCCcchhhHHHHH----hhCcEEEEecccccCCCCcCCCCCCCccccCCcccccccccCCcE
Confidence 3333332222 1 222 233444432 334322221 23454443 2222111 111111 122344
Q ss_pred Ee------CCEEEeeceeccCCHHHHHHHHHHcCCCh-hcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCcccccc
Q 008808 471 FI------RGEEIISGAQRIHIPEFLAERAQACGIDV-KTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSL 543 (553)
Q Consensus 471 ~~------~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~-~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~ 543 (553)
++ .+.|+.|-+.|. |.+.|+++++-.|... -..+|--..+.--+|-+-|.|||=-||+|+|+...+|.+|..
T Consensus 237 lvwn~~l~~afElSSMGIRV-de~~l~~Ql~ltgdeDrl~~~wHq~llng~lP~TIGGGIGQSRl~M~lL~k~HIGeVQ~ 315 (330)
T COG2502 237 LVWNPVLGDAFELSSMGIRV-DEDALKRQLALTGDEDRLELEWHQMLLNGELPQTIGGGIGQSRLCMLLLQKKHIGEVQA 315 (330)
T ss_pred EEechhccchheeecceeEe-cHHHHHHHHhccCchhhhcCHHHHHHHcCCCCccccCcccHHHHHHHHhcccccceeee
Confidence 43 247999988886 5667778877666542 233444444444489999999999999999999999999853
|
|
| >PRK00037 hisS histidyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.5e-05 Score=82.30 Aligned_cols=101 Identities=20% Similarity=0.247 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----CCC------Cccceee-cCCCCceeccc--ChhhHhhhcccC
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEG------GSAVFRL-DYKGQSACLAQ--SPQLHKQMSICG 312 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~eg------ga~~F~v-~~~~~~~~L~~--SPql~lk~li~~ 312 (553)
.-.+.+..+...+|+.|...||.||.||++.... ..| ....|.+ +-.|+.+.||- .|++..-.+--.
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~~ar~~~~~~ 95 (412)
T PRK00037 16 EESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGGRSLTLRPEGTAPVVRAVIEHK 95 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCCCCEEEecCCCcHHHHHHHHhCC
Confidence 3456788899999999999999999999995321 111 1235554 33577888873 355543211101
Q ss_pred -CCceeEEEeceecCCCCCCCCCcCcccceeEEecc
Q 008808 313 -DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347 (553)
Q Consensus 313 -g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~ 347 (553)
..-|+|++|+|||+|.. ...|.-||+|+++|.--
T Consensus 96 ~~p~r~~~~g~vfR~e~~-~~gr~ref~Q~g~ei~g 130 (412)
T PRK00037 96 LQPFKLYYIGPMFRYERP-QKGRYRQFHQFGVEVIG 130 (412)
T ss_pred CCCeEEEEEcCccccCCC-CCCcccceEEcCeeeeC
Confidence 45699999999999976 44567999999999743
|
|
| >cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.6e-05 Score=77.31 Aligned_cols=117 Identities=17% Similarity=0.092 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC---CCC------ccceeecCCC-----CceecccChhhHhhhcc--
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG------SAVFRLDYKG-----QSACLAQSPQLHKQMSI-- 310 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egg------a~~F~v~~~~-----~~~~L~~SPql~lk~li-- 310 (553)
-.+++.+|++.+++.+.+.||.||.||.|..... .+| .+.|.+.-.+ .+++|+-..+-.+=.++
T Consensus 31 g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~ 110 (261)
T cd00778 31 GYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPMFSK 110 (261)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcEEEcCCCCHHHHHHHHh
Confidence 3578889999999999999999999999975422 121 2356653322 46888876443322221
Q ss_pred --cC--C-CceeEEEeceecCCCCCC--CCCcCcccceeEEeccccCHHHHHHHHHHHHHH
Q 008808 311 --CG--D-FGRVFETGPVFRAEDSYT--HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (553)
Q Consensus 311 --~~--g-~~rVfeIg~~FR~E~~~t--~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~ 364 (553)
.+ . -=|+|+|++|||+|...+ .--.-||+|.|.+..+. +.++..+..++++..
T Consensus 111 ~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~-~~e~~~~~~~~~~~~ 170 (261)
T cd00778 111 WIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHA-TEEEAEEEVLQILDL 170 (261)
T ss_pred hccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccC-CHHHHHHHHHHHHHH
Confidence 11 1 248999999999998532 11346999999987776 577877777777643
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria. |
| >cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0002 Score=72.86 Aligned_cols=114 Identities=15% Similarity=0.105 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccCC---CC-----C-ccceeecCCC-----CceecccChhhHh-----hh
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----G-SAVFRLDYKG-----QSACLAQSPQLHK-----QM 308 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---eg-----g-a~~F~v~~~~-----~~~~L~~SPql~l-----k~ 308 (553)
.+++.+|.+.+++-+...||.||.||.|..... .| . .+.|.+..-+ .+++|+-..+..+ ..
T Consensus 32 ~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~l~LrPt~e~~~~~~~~~~ 111 (264)
T cd00772 32 KAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAGDEELEEDFALRPTLEENIGEIAAKF 111 (264)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEEeCCCCccCceEEECCCCCHHHHHHHHhh
Confidence 457889999999999999999999999965321 11 1 2235543322 6788986655432 22
Q ss_pred ccc-CCC-ceeEEEeceecCCCCCCCC---CcCcccceeEEeccccCHHHHHHHHHHHHH
Q 008808 309 SIC-GDF-GRVFETGPVFRAEDSYTHR---HLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 309 li~-~g~-~rVfeIg~~FR~E~~~t~r---Hl~EFt~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
... ..+ =|+|++++|||+|-. +.+ -.-||+|.|.+.... +-++..+.++.++.
T Consensus 112 i~s~~~LPlrl~~~~~~fR~E~r-~~~Gl~R~reF~~~e~~~~~~-~~e~a~~e~~~~~~ 169 (264)
T cd00772 112 IKSWKDLPQHLNQIGNKFRDEIR-PRFGFLRAREFIMKDGHSAHA-DAEEADEEFLNMLS 169 (264)
T ss_pred hhhhhccCeeEEEEeCeEeCcCC-CCCCcceeeEEEEeeeEEecC-CHHHHHHHHHHHHH
Confidence 211 122 399999999999953 322 246999999986434 56777776666664
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.69 E-value=7.6e-05 Score=75.43 Aligned_cols=93 Identities=20% Similarity=0.273 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHhHhCC--cEEEecceeeccCCCCCccceeec-----CCCCceeccc--Chh---hHhhhcccC--C
Q 008808 248 FRIQSQVGNIFRQFLLSEN--FVEIHTPKLIAGSSEGGSAVFRLD-----YKGQSACLAQ--SPQ---LHKQMSICG--D 313 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~g--F~EV~TP~l~~~~~egga~~F~v~-----~~~~~~~L~~--SPq---l~lk~li~~--g 313 (553)
.+++..|.+.+|+.|...| |.||.||+|... ..|.+. .-+..++||- +|. .++...... .
T Consensus 32 ~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~------~mf~~~~g~~d~~~~~~~Lrp~~~~~~~~~~~~~~~~~~~~ 105 (254)
T cd00774 32 VELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE------LMFKTSIGPVESGGNLGYLRPETAQGIFVNFKNLLEFNRRK 105 (254)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEeccccCCH------HHheeeecccCCCCcccccCCcccchHHHHHHHHHHHhCCC
Confidence 4688999999999999885 999999999653 455553 2345678874 321 222222111 1
Q ss_pred -CceeEEEeceecCCCCCC--CCCcCcccceeEEec
Q 008808 314 -FGRVFETGPVFRAEDSYT--HRHLCEFTGLDVEME 346 (553)
Q Consensus 314 -~~rVfeIg~~FR~E~~~t--~rHl~EFt~lE~e~a 346 (553)
-=|+||||+|||+|.+.. .--.-||||.|+|.-
T Consensus 106 lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f 141 (254)
T cd00774 106 LPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFF 141 (254)
T ss_pred CCchhhhhchhhccccCcccceeeeccchhhheeee
Confidence 238999999999997521 124579999999963
|
GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly |
| >cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00015 Score=73.31 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccC--CC-CC-----ccceeecC-CCCceecccChh-----hHhhhccc-C
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS--SE-GG-----SAVFRLDY-KGQSACLAQSPQ-----LHKQMSIC-G 312 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~--~e-gg-----a~~F~v~~-~~~~~~L~~SPq-----l~lk~li~-~ 312 (553)
.+++.+|.+.+++.|...||.||.||.|.... .. |. .+.|.+.- -+.+++|+...+ ++...+.. .
T Consensus 31 ~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d~~~~~l~LrPt~e~~~t~~~~~~i~s~~ 110 (255)
T cd00779 31 LRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDRHGKEFLLGPTHEEVITDLVANEIKSYK 110 (255)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEecCCCCeEEEecCCcHHHHHHHHhccccHh
Confidence 46788999999999999999999999996421 00 22 23566533 356788886533 23322211 1
Q ss_pred CC-ceeEEEeceecCCCCCCCC---CcCcccceeEEeccccCHHHHHHHHHHHHH
Q 008808 313 DF-GRVFETGPVFRAEDSYTHR---HLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 313 g~-~rVfeIg~~FR~E~~~t~r---Hl~EFt~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
.+ =|+|++|+|||+|.. +.+ -.-||+|.|.+.... +-.+.....++++.
T Consensus 111 ~LPlr~~~~~~~FR~E~~-~~~Gl~R~reF~q~e~~~~~~-~~~~a~~~~~~i~~ 163 (255)
T cd00779 111 QLPLNLYQIQTKFRDEIR-PRFGLMRGREFLMKDAYSFDI-DEESLEETYEKMYQ 163 (255)
T ss_pred hCCHHHHhCcceecCCCC-CCCceeeeeeEeHhhheeccC-CHHHHHHHHHHHHH
Confidence 22 399999999999942 211 246999999997554 34455554444443
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes. |
| >cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00017 Score=74.56 Aligned_cols=115 Identities=15% Similarity=0.216 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCC-----CccceeecCCCCceecccChhhHhhhcccCC----
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEG-----GSAVFRLDYKGQSACLAQSPQLHKQMSICGD---- 313 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~eg-----ga~~F~v~~~~~~~~L~~SPql~lk~li~~g---- 313 (553)
.-.+++.+|.+++++.+.+.||.||.||.|.... ..| +...|.++ +.+++|+-..+..+=.++...
T Consensus 50 ~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~--~~~~~L~pt~e~~~~~l~~~~~~s~ 127 (297)
T cd00770 50 DGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVE--GEDLYLIATAEVPLAALHRDEILEE 127 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEec--CCCEEEeecCCHHHHHHHhcccCCH
Confidence 3457889999999999999999999999997532 111 22356663 367888866665554333221
Q ss_pred ---CceeEEEeceecCCCC------CCCCCcCcccceeEEeccccCHHHHHHHHHHHHHH
Q 008808 314 ---FGRVFETGPVFRAEDS------YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (553)
Q Consensus 314 ---~~rVfeIg~~FR~E~~------~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~ 364 (553)
-=|+|++|+|||+|-+ .+.--..||+|.|.+ .|..+ ++..+..++++..
T Consensus 128 ~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~-~f~~~-e~~~~~~~~~l~~ 185 (297)
T cd00770 128 EELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQF-VFTKP-EESWEELEELISN 185 (297)
T ss_pred hhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEE-EEECc-hHHHHHHHHHHHH
Confidence 2489999999999964 122245799999997 46543 6666655555543
|
SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer. |
| >PRK09194 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00035 Score=78.56 Aligned_cols=121 Identities=22% Similarity=0.247 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----C---C-CCccceee-cCCCCceecccChh-----hHhhhccc-
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----S---E-GGSAVFRL-DYKGQSACLAQSPQ-----LHKQMSIC- 311 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~---e-gga~~F~v-~~~~~~~~L~~SPq-----l~lk~li~- 311 (553)
-++++.+|.+.+|+.|.+.||.||.||.|.... + + -+.+.|.+ +-.+.+++|+-..+ ++...+..
T Consensus 46 g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~~~~l~LrPt~e~~~~~~~~~~~~s~ 125 (565)
T PRK09194 46 GLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLKDRHGRDFVLGPTHEEVITDLVRNEIKSY 125 (565)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEEecCCCCEEEECCCChHHHHHHHHhhhhhc
Confidence 356889999999999999999999999997421 1 1 12346665 33467888885333 22222221
Q ss_pred CC-CceeEEEeceecCCCCCCCC---CcCcccceeEEeccccCHHHHHHHHHHHH---HHHHHHH
Q 008808 312 GD-FGRVFETGPVFRAEDSYTHR---HLCEFTGLDVEMEIKKHYSEVMDIVDRLF---VTIFDGL 369 (553)
Q Consensus 312 ~g-~~rVfeIg~~FR~E~~~t~r---Hl~EFt~lE~e~a~~~~~~~~m~~~e~ll---~~i~~~l 369 (553)
.. --|+|+|++|||.|.. +.+ -.-||+|.|.|.... +-.+.....+.++ ..+++.+
T Consensus 126 ~~LP~r~yqi~~~fR~E~r-p~~Gl~R~reF~q~d~~~f~~-~~~~a~~~~~~~~~~~~~i~~~l 188 (565)
T PRK09194 126 KQLPLNLYQIQTKFRDEIR-PRFGLMRGREFIMKDAYSFHA-DEESLDETYDAMYQAYSRIFDRL 188 (565)
T ss_pred ccCCeEEEEeeCCccCCCC-CCCcccccccEEEeeEEEEcC-ChHHHHHHHHHHHHHHHHHHHHh
Confidence 12 2499999999999942 211 246999999997543 3444444444554 4444443
|
|
| >cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00036 Score=72.16 Aligned_cols=115 Identities=17% Similarity=0.218 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCC-----ccceeecCCCCceecccChhhH-----hhhccc-CC
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGG-----SAVFRLDYKGQSACLAQSPQLH-----KQMSIC-GD 313 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egg-----a~~F~v~~~~~~~~L~~SPql~-----lk~li~-~g 313 (553)
.+++..|.+.+++.+.+.||.||.||.|.... ..|. .+.|.+..-+..++||-..+-. .+.... ..
T Consensus 30 ~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~l~LRP~~~~~~~~~~~~~~~s~~~ 109 (298)
T cd00771 30 AIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFEEEDEEYGLKPMNCPGHCLIFKSKPRSYRD 109 (298)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEeccCCceEEEcccCCHHHHHHHHhhccchhh
Confidence 56788999999999999999999999996432 1121 2356665445678887433322 222211 12
Q ss_pred C-ceeEEEeceecCCCCCCCC---CcCcccceeEEeccccCHHHHHHHHHHHHHH
Q 008808 314 F-GRVFETGPVFRAEDSYTHR---HLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (553)
Q Consensus 314 ~-~rVfeIg~~FR~E~~~t~r---Hl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~ 364 (553)
+ =|+|++|+|||+|.+.+.+ -.-||+|.|.+.- .. -++..+.+++++..
T Consensus 110 LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~-~~-~e~~~~e~~e~l~~ 162 (298)
T cd00771 110 LPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIF-CT-PDQIKEEIKGVLDL 162 (298)
T ss_pred CCeEEEEecCcccCCCCCCCCCccccccEEECCEEEE-eC-CcchHHHHHHHHHH
Confidence 2 3999999999999763211 2369999999974 32 24444444444443
|
ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00041 Score=77.84 Aligned_cols=122 Identities=20% Similarity=0.244 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----C----CCCccceeecC-CCCceecccChh-----hHhhhccc-
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----S----EGGSAVFRLDY-KGQSACLAQSPQ-----LHKQMSIC- 311 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~----egga~~F~v~~-~~~~~~L~~SPq-----l~lk~li~- 311 (553)
-.+++.+|.+.+|+.|...||.||.||.|.... + .-+.+.|.+.. .+..++|+-..| ++...+..
T Consensus 46 g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~dr~~~~l~LrPT~Ee~~t~~~~~~i~sy 125 (568)
T TIGR00409 46 GLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLKDRKGREFVLGPTHEEVITDLARNEIKSY 125 (568)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEEecCCCCEEEEcCCCcHHHHHHHHHHHhhc
Confidence 356789999999999999999999999997531 1 11334677633 567888885422 22222211
Q ss_pred CCC-ceeEEEeceecCCC-CCCC-CCcCcccceeEEeccccCHHHHHHHHHHHH---HHHHHHH
Q 008808 312 GDF-GRVFETGPVFRAED-SYTH-RHLCEFTGLDVEMEIKKHYSEVMDIVDRLF---VTIFDGL 369 (553)
Q Consensus 312 ~g~-~rVfeIg~~FR~E~-~~t~-rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll---~~i~~~l 369 (553)
..+ -|+|+|++|||+|. .+-. --.-||+|.|.|.-. .+..+.....+.|+ ..+|+.+
T Consensus 126 r~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~-~~~~~a~~e~~~~~~~y~~if~~L 188 (568)
T TIGR00409 126 KQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFH-SDEESLDATYQKMYQAYSNIFSRL 188 (568)
T ss_pred cccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEe-CChHHHHHHHHHHHHHHHHHHHHh
Confidence 123 39999999999993 2111 024699999999754 45566555566554 4455443
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi. |
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00037 Score=80.10 Aligned_cols=121 Identities=16% Similarity=0.112 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCCc-----cceeecCCCCceecccChhhHh-----hhcccC
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGS-----AVFRLDYKGQSACLAQSPQLHK-----QMSICG 312 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egga-----~~F~v~~~~~~~~L~~SPql~l-----k~li~~ 312 (553)
.-.+++..|++.+|+.+...||.||.||.|.... .-|.. +.|.++--+..++|+--.+-.. +....-
T Consensus 319 ~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~~Lrp~~~~~~~~~~~~~~~s~ 398 (686)
T PLN02908 319 HGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVFEIEKQEFGLKPMNCPGHCLMFAHRVRSY 398 (686)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEEecCCeeEEEcCCCcHHHHHHHhccccCh
Confidence 4458899999999999999999999999996432 11211 2455543457788874443332 222111
Q ss_pred -C-CceeEEEeceecCCCCC---CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHH
Q 008808 313 -D-FGRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDG 368 (553)
Q Consensus 313 -g-~~rVfeIg~~FR~E~~~---t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~ 368 (553)
. -=|+|++|+|||+|-+. +..-.-||||.|.+. |. .-+++.+.+++++..+..-
T Consensus 399 r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~-~~~q~~~e~~~~l~~~~~v 457 (686)
T PLN02908 399 RELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FC-REDQIKDEVKGVLDFLDYV 457 (686)
T ss_pred hhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEE-Ec-CHHHHHHHHHHHHHHHHHH
Confidence 1 23899999999999762 222356999999997 65 3577888777777655443
|
|
| >PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00059 Score=70.71 Aligned_cols=117 Identities=21% Similarity=0.301 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC------CCCCccceee-cCCCCceeccc--ChhhHhhhcc---cCC
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS------SEGGSAVFRL-DYKGQSACLAQ--SPQLHKQMSI---CGD 313 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~------~egga~~F~v-~~~~~~~~L~~--SPql~lk~li---~~g 313 (553)
.-.+.+..|.+.+++.|...||.||+||++.... .+...+.|.+ +--|..+.||- .+++..-.+. ...
T Consensus 8 ~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~D~~G~~l~LR~D~T~~iaR~~a~~~~~~~ 87 (311)
T PF13393_consen 8 EEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRFLDRSGRVLALRPDLTVPIARYVARNLNLPR 87 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEEECTTSSEEEE-SSSHHHHHHHHHHCCGSSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEEEecCCcEeccCCCCcHHHHHHHHHhcCcCC
Confidence 3457788999999999999999999999996421 1112245554 34667777773 2333321111 244
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHH---HHHHHHHHHHH
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYS---EVMDIVDRLFV 363 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~---~~m~~~e~ll~ 363 (553)
.-|+|.+|+|||.+.. ...+.-||+|+.+|.-...+.. |++.++.+++.
T Consensus 88 ~~r~~y~g~vfR~~~~-~~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~ 139 (311)
T PF13393_consen 88 PKRYYYIGPVFRYERP-GKGRPREFYQCGFEIIGSSSLEADAEVIKLADEILD 139 (311)
T ss_dssp SEEEEEEEEEEEEETT-TTTBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHH
T ss_pred CceEEEEcceeecccc-CCCCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 6899999999999975 3346689999999975544443 66666666664
|
... |
| >PRK03991 threonyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00059 Score=77.15 Aligned_cols=122 Identities=16% Similarity=0.222 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeecc---CCCC-----CccceeecCCCCceecccChhh-----HhhhcccC
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAG---SSEG-----GSAVFRLDYKGQSACLAQSPQL-----HKQMSICG 312 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~---~~eg-----ga~~F~v~~~~~~~~L~~SPql-----~lk~li~~ 312 (553)
.-.+++..|.+++++.+.+.||.+|.||.|... ..-| +.+.|.+.--+..++|+-..+. |++....-
T Consensus 225 ~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~~~e~l~Lrp~~c~~~~~~~~~~~~Sy 304 (613)
T PRK03991 225 KGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKSDKKDLMLRFAACFGQFLMLKDMTISY 304 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEecCCCceEEEecCCCHHHHHHHhCCcCch
Confidence 446889999999999999999999999988322 2222 2346666544678888855542 23322211
Q ss_pred -C-CceeEEEec-eecCCCCC---CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHH
Q 008808 313 -D-FGRVFETGP-VFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDG 368 (553)
Q Consensus 313 -g-~~rVfeIg~-~FR~E~~~---t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~ 368 (553)
. -=|+||+|+ |||+|-+. +..-+-||||-|.+. |..+.++.++.+++++..+..-
T Consensus 305 rdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~-f~~~~eqa~~e~~~~l~~~~~i 365 (613)
T PRK03991 305 KNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHT-LCKDMEQAMEEFEKQYEMILET 365 (613)
T ss_pred hhCChhhheecchheeCCCCCCCcCcccccceEeeeEEE-EECCHHHHHHHHHHHHHHHHHH
Confidence 1 248999999 99999752 223467999999986 4445788888888877665443
|
|
| >PRK05431 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00072 Score=73.37 Aligned_cols=115 Identities=12% Similarity=0.209 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHhH-hCCcEEEecceeeccCC---CC-----CccceeecCCCCceecccChhhHhhhcccCC----
Q 008808 247 IFRIQSQVGNIFRQFLL-SENFVEIHTPKLIAGSS---EG-----GSAVFRLDYKGQSACLAQSPQLHKQMSICGD---- 313 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~-~~gF~EV~TP~l~~~~~---eg-----ga~~F~v~~~~~~~~L~~SPql~lk~li~~g---- 313 (553)
-.++..+|++++++.+. +.||.||.||.|..... .| +...|.+. +.++||+-..|..+=.+....
T Consensus 169 ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i~--~~~~~L~pTsE~~l~~l~~~~~~s~ 246 (425)
T PRK05431 169 GARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIE--DDDLYLIPTAEVPLTNLHRDEILDE 246 (425)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEec--CCCEEEEeCCcHHHHHHHhcccCCH
Confidence 45688899999999998 99999999999975321 12 12356664 567888866665543333222
Q ss_pred ---CceeEEEeceecCCCCC------CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHH
Q 008808 314 ---FGRVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365 (553)
Q Consensus 314 ---~~rVfeIg~~FR~E~~~------t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i 365 (553)
-=|+|++++|||+|-.. +---..||+|.|.+ .|.. -++..+..++|+...
T Consensus 247 ~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~-~e~s~~~~~~~l~~~ 305 (425)
T PRK05431 247 EELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTK-PEDSYAELEELTANA 305 (425)
T ss_pred HhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEEC-HHHHHHHHHHHHHHH
Confidence 24899999999999641 11124699999998 5664 477777777776543
|
|
| >PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00061 Score=76.82 Aligned_cols=120 Identities=18% Similarity=0.212 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCC-----ccceee-cCCCCceecccC--hh---hHhhhcccC
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGG-----SAVFRL-DYKGQSACLAQS--PQ---LHKQMSICG 312 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egg-----a~~F~v-~~~~~~~~L~~S--Pq---l~lk~li~~ 312 (553)
-.+++..|.+.+|+.+...||.||.||.|.... ..|. .+.|.+ +--|+.++||-- |. +|.+.....
T Consensus 205 ~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~d~~~~~~~LRP~~~~~~~~~~~~~~~s~ 284 (575)
T PRK12305 205 GAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPMEIDEEEYYLKPMNCPGHILIYKSRLRSY 284 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhcccccccCCceEEEecCCCHHHHHHHhcccCCh
Confidence 356789999999999999999999999996431 1122 124554 334577888732 22 122222111
Q ss_pred -CC-ceeEEEeceecCCCCCC---CCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHH
Q 008808 313 -DF-GRVFETGPVFRAEDSYT---HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDG 368 (553)
Q Consensus 313 -g~-~rVfeIg~~FR~E~~~t---~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~ 368 (553)
.+ =|.|++|+|||+|.+.. .--.-||+|+|.+. |. .-+...+.+.+++..+...
T Consensus 285 ~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~i-f~-~~~~~~~e~~e~i~l~~~~ 343 (575)
T PRK12305 285 RDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHI-FC-TPDQIEDEILKVLDFVLEL 343 (575)
T ss_pred hhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEE-Ee-CHHHHHHHHHHHHHHHHHH
Confidence 22 39999999999998631 11236999999995 54 3455555555555544433
|
|
| >TIGR00414 serS seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0012 Score=71.47 Aligned_cols=115 Identities=16% Similarity=0.235 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC---CC-----CccceeecCCCCceecccChhhHhhhcccC------
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----GSAVFRLDYKGQSACLAQSPQLHKQMSICG------ 312 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---eg-----ga~~F~v~~~~~~~~L~~SPql~lk~li~~------ 312 (553)
-.++..+|++++++.+.+.||.||.||.|..... .| +...|.+. +.++||+-..|..+-.+...
T Consensus 172 g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~--~~~~~L~pTsE~~~~~~~~~~i~s~~ 249 (418)
T TIGR00414 172 GAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLE--DTDLYLIPTAEVPLTNLHRNEILEEE 249 (418)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEec--CCCEEEEeCCcHHHHHHHhCcCCChH
Confidence 4677899999999999999999999999975321 11 12356554 46788887665544322222
Q ss_pred C-CceeEEEeceecCCCCC------CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHH
Q 008808 313 D-FGRVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365 (553)
Q Consensus 313 g-~~rVfeIg~~FR~E~~~------t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i 365 (553)
. --|+|++++|||+|-+. +---..||+|.|.+ .|.. -++..+..++++...
T Consensus 250 ~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~-~f~~-~e~s~~~~~~~~~~~ 307 (418)
T TIGR00414 250 ELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELV-KFCK-PEESAEELEEMTSDA 307 (418)
T ss_pred hCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEE-EEcC-HHHHHHHHHHHHHHH
Confidence 1 25899999999999631 11134699999996 4653 577777666666543
|
This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model. |
| >PRK00960 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0031 Score=69.57 Aligned_cols=114 Identities=15% Similarity=0.157 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHh-HhCCcEEEecceeeccC---CCCCcc-----ceeecCCC--Cc------eec-----------
Q 008808 247 IFRIQSQVGNIFRQFL-LSENFVEIHTPKLIAGS---SEGGSA-----VFRLDYKG--QS------ACL----------- 298 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl-~~~gF~EV~TP~l~~~~---~egga~-----~F~v~~~~--~~------~~L----------- 298 (553)
-.++...+.+++++.+ ...||.||-||.|.... ..|... .|.|..++ .+ .||
T Consensus 222 Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~~ 301 (517)
T PRK00960 222 MTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEKL 301 (517)
T ss_pred HHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhcccccccccccc
Confidence 4567788899998875 55699999999997532 112222 34442111 00 222
Q ss_pred -----------cc--Chh---hHhhhcccCCCc---eeEE-EeceecCCCC--CCCCCcCcccceeEEeccccCHHHHHH
Q 008808 299 -----------AQ--SPQ---LHKQMSICGDFG---RVFE-TGPVFRAEDS--YTHRHLCEFTGLDVEMEIKKHYSEVMD 356 (553)
Q Consensus 299 -----------~~--SPq---l~lk~li~~g~~---rVfe-Ig~~FR~E~~--~t~rHl~EFt~lE~e~a~~~~~~~~m~ 356 (553)
+- -|- +|....+ ..-+ |+|+ .|+|||+|.. ++..-.-||+|.|.- .|. .-+++.+
T Consensus 302 ~~~L~~~~yvLrPa~Cp~~y~~~~~~il-s~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~-tpEqs~e 378 (517)
T PRK00960 302 KEKLRDPGYVLAPAQCEPFYQFFQGETV-DVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLG-TPEQVEE 378 (517)
T ss_pred ccccccccccccccCcHHHHHHHhCCcC-ChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEe-CHHHHHH
Confidence 21 111 2222222 2223 8999 6699999952 223335699999997 565 5788888
Q ss_pred HHHHHHH
Q 008808 357 IVDRLFV 363 (553)
Q Consensus 357 ~~e~ll~ 363 (553)
..++++.
T Consensus 379 e~e~ll~ 385 (517)
T PRK00960 379 IRDELLK 385 (517)
T ss_pred HHHHHHH
Confidence 8888773
|
|
| >PRK14799 thrS threonyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00092 Score=74.55 Aligned_cols=119 Identities=14% Similarity=0.113 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCCc-----cceeecCCCCceecccChhhHhhhcccC------
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGS-----AVFRLDYKGQSACLAQSPQLHKQMSICG------ 312 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egga-----~~F~v~~~~~~~~L~~SPql~lk~li~~------ 312 (553)
=.++|..|.+.+|+.+.+.||.||.||.|.... ..|+- +.|.++--+..++|+--..-..=++...
T Consensus 167 G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~~~~~e~~~LrPm~cp~~~~~~~~~~~Syr 246 (545)
T PRK14799 167 GQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFNMEGDEYGVKPMNCPAHILIYKSKPRTYR 246 (545)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhhccccccchhhcceeeccCceEEeccCCCHHHHHHHhccccChh
Confidence 457899999999999999999999999984321 11221 1344443467788874443333222221
Q ss_pred C-CceeEEEeceecCCCCCCC---CCcCcccceeEEeccccCHHHHHHHHHHHHHHHHH
Q 008808 313 D-FGRVFETGPVFRAEDSYTH---RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFD 367 (553)
Q Consensus 313 g-~~rVfeIg~~FR~E~~~t~---rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~ 367 (553)
. -=|.|++|+|||+|.+... .-.-||||.|... |. .-.++.+.+.+++..+..
T Consensus 247 dLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHi-f~-~~~q~~~E~~~~l~~i~~ 303 (545)
T PRK14799 247 DLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHI-FL-REDQLREEIKMLISKTVE 303 (545)
T ss_pred hCCHhhEEecceecCCCCCCccccccceeEEEcccEE-Ee-CHHHHHHHHHHHHHHHHH
Confidence 1 2389999999999987321 2356999999987 65 356665666555554443
|
|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00082 Score=76.74 Aligned_cols=117 Identities=21% Similarity=0.285 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCC-----ccceee-cCCCCceecccC--hh---hHhhhccc
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGG-----SAVFRL-DYKGQSACLAQS--PQ---LHKQMSIC 311 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egg-----a~~F~v-~~~~~~~~L~~S--Pq---l~lk~li~ 311 (553)
.-.+++..|.+.+|+.+...||.||.||+|.... ..|. .+.|.+ +--|+.+.||-- |. +|.+....
T Consensus 268 ~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~d~~~~~~~LRP~~~~~~~r~~~~~~~s 347 (638)
T PRK00413 268 KGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTTESDGEEYALKPMNCPGHVQIYKQGLRS 347 (638)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhccceeecCCCcEEEEecCCcHHHHHHHhCcCCC
Confidence 3456789999999999999999999999995432 1122 124554 334577888732 22 22322221
Q ss_pred -CCC-ceeEEEeceecCCCCCC---CCCcCcccceeEEeccccCHHHHHHHHHHHHHH
Q 008808 312 -GDF-GRVFETGPVFRAEDSYT---HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (553)
Q Consensus 312 -~g~-~rVfeIg~~FR~E~~~t---~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~ 364 (553)
..+ =|+|++|+|||+|.+.. ..-.-||||+|.+. |.. -....+.+.+++..
T Consensus 348 ~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~-~g~-~~~~~~e~~eii~l 403 (638)
T PRK00413 348 YRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHI-FCT-PEQIEEEVKKVIDL 403 (638)
T ss_pred hhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEE-EcC-HHHHHHHHHHHHHH
Confidence 122 39999999999998631 11235999999996 542 23333333444443
|
|
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0011 Score=75.70 Aligned_cols=116 Identities=17% Similarity=0.165 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCCcc-----ceeecCCCCceecccChhhHhhhcccC------C-
Q 008808 249 RIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGSA-----VFRLDYKGQSACLAQSPQLHKQMSICG------D- 313 (553)
Q Consensus 249 ~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egga~-----~F~v~~~~~~~~L~~SPql~lk~li~~------g- 313 (553)
+++..|.+.+++.+...||.||.||.|.... ..|... .|.++--+..++|+-..+-..=++... .
T Consensus 275 ~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~L 354 (639)
T PRK12444 275 IIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYREL 354 (639)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhhhcCeecCCCcEEEEccCCCHHHHHHHhCcccChhhC
Confidence 4566699999999999999999999996432 113222 342332356677875554443322222 2
Q ss_pred CceeEEEeceecCCCCC---CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHH
Q 008808 314 FGRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIF 366 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~---t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~ 366 (553)
.-|+|++|+|||.|.+. +.--.-||+|.|.+ .|. .-+++.+.+++++..+.
T Consensus 355 P~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~-~f~-~~~~~~~e~~~~~~~~~ 408 (639)
T PRK12444 355 PIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFV-TPDQIEDEIKSVMAQID 408 (639)
T ss_pred CceeEEeccccCCCCCcCCcCcceeeeeEEccEE-EEC-CHHHHHHHHHHHHHHHH
Confidence 24999999999999753 21124699999999 675 45666666555555433
|
|
| >PRK08661 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00062 Score=74.98 Aligned_cols=115 Identities=16% Similarity=0.058 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC---CCC------ccceeecCC-----CCceecccCh-----hhHhh
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG------SAVFRLDYK-----GQSACLAQSP-----QLHKQ 307 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egg------a~~F~v~~~-----~~~~~L~~SP-----ql~lk 307 (553)
-++++..|.+.+++.|...||.||.||.|..... ++| .+.|.+... +.+++|+-.. .+|..
T Consensus 43 g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~~ 122 (477)
T PRK08661 43 GYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYKK 122 (477)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHHHh
Confidence 4578899999999999999999999999965421 121 235666432 4678998555 33444
Q ss_pred hccc-CC-CceeEEEeceecCCCCCCC--CCcCcccceeEEeccccCHHHHHHHHHHHHH
Q 008808 308 MSIC-GD-FGRVFETGPVFRAEDSYTH--RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 308 ~li~-~g-~~rVfeIg~~FR~E~~~t~--rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
.+.. .+ -=|+|++++|||+|.+ ++ --.-||+|.|.+..+. +.++..+.++.++.
T Consensus 123 ~i~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~-~~eea~~e~~~~l~ 180 (477)
T PRK08661 123 WIQSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHA-TEEEAEEETLEMLE 180 (477)
T ss_pred hhcchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeC-CHHHHHHHHHHHHH
Confidence 3322 12 2489999999999986 43 2457999999987776 57888777776664
|
|
| >TIGR00418 thrS threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00093 Score=75.17 Aligned_cols=115 Identities=19% Similarity=0.153 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccCC--C-CCc-----cceeecC-CCCceecccChhhH-----hhhcccC-
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E-GGS-----AVFRLDY-KGQSACLAQSPQLH-----KQMSICG- 312 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~--e-gga-----~~F~v~~-~~~~~~L~~SPql~-----lk~li~~- 312 (553)
.+++..|.+.+|+.+...||.||.||+|..... . |.. +.|.+.- -|+.++||-...-. .+..+..
T Consensus 200 ~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~d~~~~~~~LrP~~~~~i~~~~~~~~~s~~ 279 (563)
T TIGR00418 200 ATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPFTELDNREFMLKPMNCPGHFLIFKSSLRSYR 279 (563)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhcceeccCCCceEEEecCCCHHHHHHHhCcCCChH
Confidence 457889999999999999999999999964320 1 222 2344422 35788888544333 2222221
Q ss_pred C-CceeEEEeceecCCCCCCC----CCcCcccceeEEeccccCHHHHHHHHHHHHHHH
Q 008808 313 D-FGRVFETGPVFRAEDSYTH----RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365 (553)
Q Consensus 313 g-~~rVfeIg~~FR~E~~~t~----rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i 365 (553)
. .-|+|++|+|||+|.+ +. --.-||+|.|.|. |.. -.+.....++++..+
T Consensus 280 ~lP~rl~~~g~~fR~E~~-g~~~Gl~R~reF~q~~~~~-~~~-~~~~~~e~~~~i~~~ 334 (563)
T TIGR00418 280 DLPLRIAELGYSHRYEQS-GELHGLMRVRGFTQDDAHI-FCT-EDQIKEEFKNQFRLI 334 (563)
T ss_pred HCCceeeEeccccCCCCC-cCCcCcccccceEEeeeEE-EcC-HHHHHHHHHHHHHHH
Confidence 2 2499999999999964 32 1236999999996 432 345444444444433
|
This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether.. |
| >PRK12325 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0018 Score=70.71 Aligned_cols=114 Identities=17% Similarity=0.195 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCC-----Cccceeec-CCCCceecccCh-----hhHhhhccc-C
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEG-----GSAVFRLD-YKGQSACLAQSP-----QLHKQMSIC-G 312 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~eg-----ga~~F~v~-~~~~~~~L~~SP-----ql~lk~li~-~ 312 (553)
.+++.+|.+.+|+-+...||.||.||.|.... ..| +.+.|.+. -.+..++|+... .++...... .
T Consensus 47 ~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~~~~~~L~Pt~e~~~~~~~~~~~~syr 126 (439)
T PRK12325 47 LKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIKDRHDREMLYGPTNEEMITDIFRSYVKSYK 126 (439)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEEecCCCCEEEEcCCCcHHHHHHHHHHhhhch
Confidence 57899999999999999999999999997431 112 23356653 346778888522 233332211 1
Q ss_pred C-CceeEEEeceecCCCCCCC---CCcCcccceeEEeccccCHHHHHHHHHHHHH
Q 008808 313 D-FGRVFETGPVFRAEDSYTH---RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 313 g-~~rVfeIg~~FR~E~~~t~---rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
. -=|+||||++||+|.. +. .-.-||+|-|.|.-.. +.+++.+...+++.
T Consensus 127 dLPlrl~q~~~~fR~E~~-~~~GL~R~reF~~~D~h~f~~-~~~~a~~~~~~~~~ 179 (439)
T PRK12325 127 DLPLNLYHIQWKFRDEIR-PRFGVMRGREFLMKDAYSFDL-DEEGARHSYNRMFV 179 (439)
T ss_pred hhchHheEecCEecCCCC-CCCCccccceEeEeccEEEeC-CHHHHHHHHHHHHH
Confidence 1 2589999999999954 31 1357999999986434 45666665555544
|
|
| >TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.001 Score=73.18 Aligned_cols=117 Identities=21% Similarity=0.185 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCC------CccceeecCC-----CCceecccChhhHh-----hh
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEG------GSAVFRLDYK-----GQSACLAQSPQLHK-----QM 308 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~eg------ga~~F~v~~~-----~~~~~L~~SPql~l-----k~ 308 (553)
++++..|.+.+|+-+.+.||.||.||.|.... .+| +.+.|.+... +.+++|+-..+-.+ +.
T Consensus 38 ~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~ 117 (472)
T TIGR00408 38 FKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKKW 117 (472)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhcc
Confidence 45689999999999999999999999996432 122 2236776543 37889986655433 22
Q ss_pred ccc-CC-CceeEEEeceecCCCCCC--CCCcCcccceeEEeccccCHHHHHHHHHHHHHHH
Q 008808 309 SIC-GD-FGRVFETGPVFRAEDSYT--HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365 (553)
Q Consensus 309 li~-~g-~~rVfeIg~~FR~E~~~t--~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i 365 (553)
... .. --|+|++++|||+|.+.+ .--..||+|-|.+..+. +.++..+.++.++...
T Consensus 118 i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~-~~e~a~~e~~~~l~~y 177 (472)
T TIGR00408 118 VKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHA-TAEEAEEQVLRALDIY 177 (472)
T ss_pred ccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhC-CHHHHHHHHHHHHHHH
Confidence 211 12 239999999999998632 11357999999986665 5777777777666433
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. |
| >PLN02837 threonine-tRNA ligase | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0038 Score=70.91 Aligned_cols=119 Identities=14% Similarity=0.072 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCC-----CccceeecC-CCCceecccChhh-----Hhhhccc
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEG-----GSAVFRLDY-KGQSACLAQSPQL-----HKQMSIC 311 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~eg-----ga~~F~v~~-~~~~~~L~~SPql-----~lk~li~ 311 (553)
.-.+++.+|++++++....+||.||.||.|.... .-| +.+.|.+.- -+..+.|+.+.+- |++....
T Consensus 245 ~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~y~l~p~~~p~~~~~~~~~~~S 324 (614)
T PLN02837 245 KGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIEDELYQLRPMNCPYHILVYKRKLHS 324 (614)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhcccccCCCCceEEECCCCcHHHHHHHhCccCC
Confidence 4457899999999999999999999999996432 111 122454422 2344566655432 2332211
Q ss_pred C--CCceeEEEeceecCCCCCC---CCCcCcccceeEEeccccCHHHHHHHHHHHHHHHH
Q 008808 312 G--DFGRVFETGPVFRAEDSYT---HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIF 366 (553)
Q Consensus 312 ~--g~~rVfeIg~~FR~E~~~t---~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~ 366 (553)
- ---|++++|+|||+|-+.. ---..||+|.|.+. |. ..++..+.+++++..+-
T Consensus 325 yrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~-f~-~~~q~~~e~~~~l~~~~ 382 (614)
T PLN02837 325 YRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FC-LEDQIKDEIRGVLDLTE 382 (614)
T ss_pred hhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEE-Ee-CHHHHHHHHHHHHHHHH
Confidence 0 1348999999999997521 12346899999995 76 46777777777766443
|
|
| >PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0071 Score=64.56 Aligned_cols=109 Identities=18% Similarity=0.262 Sum_probs=70.1
Q ss_pred HHHHHHHHHhHhCCcEEEecceeeccCC---CCCc----cceee-cCCCCceecc--cChhhHhhhc--ccCCCceeEEE
Q 008808 253 QVGNIFRQFLLSENFVEIHTPKLIAGSS---EGGS----AVFRL-DYKGQSACLA--QSPQLHKQMS--ICGDFGRVFET 320 (553)
Q Consensus 253 ~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egga----~~F~v-~~~~~~~~L~--~SPql~lk~l--i~~g~~rVfeI 320 (553)
.|.+.+++.|...||.||+||++..... ..|. ..|.+ +--|..+.|| ..+++..-.+ -....-|.|.+
T Consensus 9 ~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~~G~~l~LRpD~T~piaR~~~~~~~~~p~R~~Y~ 88 (373)
T PRK12295 9 AAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDENGEELCLRPDFTIPVCRRHIATAGGEPARYAYL 88 (373)
T ss_pred HHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECCCCCEEeeCCCCcHHHHHHHHHcCCCCCeEEEEE
Confidence 6788899999999999999999964321 1111 24554 3346777777 2333332111 01334599999
Q ss_pred eceecCCCCCCCCCcCcccceeEEeccccC----HHHHHHHHHHHHHHH
Q 008808 321 GPVFRAEDSYTHRHLCEFTGLDVEMEIKKH----YSEVMDIVDRLFVTI 365 (553)
Q Consensus 321 g~~FR~E~~~t~rHl~EFt~lE~e~a~~~~----~~~~m~~~e~ll~~i 365 (553)
|+|||.+.. +.-||+|+.+|.-...+ --|++.++-+.+..+
T Consensus 89 g~VfR~~~g----r~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~l 133 (373)
T PRK12295 89 GEVFRQRRD----RASEFLQAGIESFGRADPAAADAEVLALALEALAAL 133 (373)
T ss_pred ccEEECCCC----CCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHc
Confidence 999999832 24699999999854212 237777777666443
|
|
| >cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.017 Score=46.93 Aligned_cols=74 Identities=14% Similarity=0.214 Sum_probs=55.7
Q ss_pred EEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEE
Q 008808 107 VLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQ 186 (553)
Q Consensus 107 V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~ 186 (553)
++|.|-|.++|...+.++|++|.|.++.+.|++..+.. .++...|..|+.|.|+|.+...+. .+++.|.
T Consensus 2 ~~v~g~v~~i~~tk~g~~~~~L~D~~~~i~~~~f~~~~------~~~~~~l~~g~~v~v~g~v~~~~~-----~~~~~l~ 70 (78)
T cd04489 2 VWVEGEISNLKRPSSGHLYFTLKDEDASIRCVMWRSNA------RRLGFPLEEGMEVLVRGKVSFYEP-----RGGYQLI 70 (78)
T ss_pred EEEEEEEecCEECCCcEEEEEEEeCCeEEEEEEEcchh------hhCCCCCCCCCEEEEEEEEEEECC-----CCEEEEE
Confidence 68999999998522259999999999999999987521 223356999999999999985321 2357777
Q ss_pred EeEEE
Q 008808 187 IKKLY 191 (553)
Q Consensus 187 v~~i~ 191 (553)
++++.
T Consensus 71 v~~i~ 75 (78)
T cd04489 71 VEEIE 75 (78)
T ss_pred EEEEE
Confidence 77764
|
E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis. |
| >PLN02678 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0047 Score=67.20 Aligned_cols=117 Identities=11% Similarity=0.117 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC-C--CC-----ccceeecCCCCceecccC------hhhHhhhcccC
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-E--GG-----SAVFRLDYKGQSACLAQS------PQLHKQMSICG 312 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-e--gg-----a~~F~v~~~~~~~~L~~S------Pql~lk~li~~ 312 (553)
..+++..|++++++++..+||.||.||.|..... . |. ...|.+.--|.+.||.-. |-..-+.+--.
T Consensus 173 ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~~~~~~yLi~TaE~~l~~~h~~~~~s~~ 252 (448)
T PLN02678 173 GVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGEGDDKYLIATSEQPLCAYHRGDWIDPK 252 (448)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCceecCCCCceeeecccccccChHHhcccCCHH
Confidence 3678999999999999999999999999964221 1 11 124555322234555322 22211111011
Q ss_pred C-CceeEEEeceecCCCCC---C---CCCcCcccceeEEeccccCHHH--HHHHHHHHHHHH
Q 008808 313 D-FGRVFETGPVFRAEDSY---T---HRHLCEFTGLDVEMEIKKHYSE--VMDIVDRLFVTI 365 (553)
Q Consensus 313 g-~~rVfeIg~~FR~E~~~---t---~rHl~EFt~lE~e~a~~~~~~~--~m~~~e~ll~~i 365 (553)
. -=|++++++|||+|-+. + ..-.-+|+++|.+. |.. -++ ..+..|+|+...
T Consensus 253 eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~-~~~-pe~~~s~~~~e~~l~~~ 312 (448)
T PLN02678 253 ELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFC-ITS-PNGNESWEMHEEMLKNS 312 (448)
T ss_pred hCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEE-EEC-CCchhHHHHHHHHHHHH
Confidence 1 35899999999999751 1 11245899999954 432 234 566666666543
|
|
| >KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0021 Score=66.46 Aligned_cols=47 Identities=26% Similarity=0.445 Sum_probs=35.2
Q ss_pred ceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHH
Q 008808 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLF 362 (553)
Q Consensus 315 ~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll 362 (553)
-|+|.|-+|||||.. +.+||.||.|+|=-.+-. -.+-++|.++++++
T Consensus 334 ~K~FSIDrVFRNEtv-DaTHLAEFHQVEGviad~gltLgdLig~l~~ff 381 (483)
T KOG2784|consen 334 AKYFSIDRVFRNETV-DATHLAEFHQVEGVIADKGLTLGDLIGILMEFF 381 (483)
T ss_pred ccccchhhhhhcccc-chHHHHHHhhhceeeecCCCcHHHHHHHHHHHH
Confidence 599999999999997 899999999999765532 12345555554443
|
|
| >PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.018 Score=49.62 Aligned_cols=76 Identities=13% Similarity=0.250 Sum_probs=60.6
Q ss_pred CCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHH--hcCCCCceEEEEEEEecCCCccCCCce
Q 008808 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV--RSLSNESIVDVIGVVSVPDVEIKGATQ 181 (553)
Q Consensus 104 g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~--~~l~~esiV~V~G~v~~~~~~~~~~t~ 181 (553)
-..|||.|-|.+.+.+++.-+|++|+|+...|+|++-... ...+ ..+..|+-|.|.|.+..-+ ..|
T Consensus 21 ~~~vwV~GEIs~~~~~~~gh~YftLkD~~a~i~~~~~~~~-------~~~i~~~~l~~G~~V~v~g~~~~y~-----~~G 88 (99)
T PF13742_consen 21 LPNVWVEGEISNLKRHSSGHVYFTLKDEEASISCVIFRSR-------ARRIRGFDLKDGDKVLVRGRVSFYE-----PRG 88 (99)
T ss_pred cCCEEEEEEEeecEECCCceEEEEEEcCCcEEEEEEEHHH-------HhhCCCCCCCCCCEEEEEEEEEEEC-----CCc
Confidence 4789999999999885447899999999999999998752 1112 3689999999999987644 245
Q ss_pred eEEEEEeEEE
Q 008808 182 QVEVQIKKLY 191 (553)
Q Consensus 182 ~~Ei~v~~i~ 191 (553)
++.+.|.+|.
T Consensus 89 ~~sl~v~~i~ 98 (99)
T PF13742_consen 89 SLSLIVEDID 98 (99)
T ss_pred EEEEEEEEeE
Confidence 7899888764
|
|
| >PRK04173 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0078 Score=65.97 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=34.5
Q ss_pred ceeEEEeceecCCCCCCCCC----cCcccceeEEeccccCHHHHHHHHHHHHHHHH
Q 008808 315 GRVFETGPVFRAEDSYTHRH----LCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIF 366 (553)
Q Consensus 315 ~rVfeIg~~FR~E~~~t~rH----l~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~ 366 (553)
=|+.|+|+|||||-+ + +| .-||||.|.+ .|. +-+++.+.+..++..+.
T Consensus 187 lr~aq~g~~~RnE~s-~-~~gL~RvReF~q~e~h-iF~-~peq~~~e~~~~l~~~~ 238 (456)
T PRK04173 187 FGIAQIGKSFRNEIT-P-RNFIFRTREFEQMELE-FFV-KPGTDNEWFAYWIELRK 238 (456)
T ss_pred eeeeEEchhHhCccC-C-CCCceeeceeeeeEEE-EEE-CcChHHHHHHHHHHHHH
Confidence 489999999999986 4 44 2799999997 465 35666666555554433
|
|
| >cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.059 Score=43.84 Aligned_cols=73 Identities=23% Similarity=0.294 Sum_probs=55.3
Q ss_pred EEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEE
Q 008808 107 VLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQ 186 (553)
Q Consensus 107 V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~ 186 (553)
|+|.|-|.+.+..| .=+|+.|+|+...|.|++-.... ......+..||-|.|.|.+.. ..+.+.|.
T Consensus 1 v~v~GeVs~~~~~~-GHvyfsLkD~~a~i~cv~f~~~~------~~~~~~l~~Gd~V~v~G~v~~-------~~G~~ql~ 66 (73)
T cd04487 1 VHIEGEVVQIKQTS-GPTIFTLRDETGTVWAAAFEEAG------VRAYPEVEVGDIVRVTGEVEP-------RDGQLQIE 66 (73)
T ss_pred CEEEEEEeccccCC-CCEEEEEEcCCEEEEEEEEchhc------cCCcCCCCCCCEEEEEEEEec-------CCeEEEEE
Confidence 58899999764344 34889999999999999886521 111246899999999999874 24579999
Q ss_pred EeEEEEe
Q 008808 187 IKKLYCV 193 (553)
Q Consensus 187 v~~i~~l 193 (553)
+.++.+|
T Consensus 67 v~~i~~~ 73 (73)
T cd04487 67 VESLEVL 73 (73)
T ss_pred EeeEEEC
Confidence 9998875
|
RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function. |
| >KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.15 Score=54.22 Aligned_cols=108 Identities=13% Similarity=0.225 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeec------cCCCCCccceeecCC-CCceec----ccChhhHhhhcccCCC
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIA------GSSEGGSAVFRLDYK-GQSACL----AQSPQLHKQMSICGDF 314 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~------~~~egga~~F~v~~~-~~~~~L----~~SPql~lk~li~~g~ 314 (553)
.-+.+|..|++.|++-|...|..+|+||.+.. ...|..--.+-+..- |.-..| +++=-=|+-|-=+..+
T Consensus 72 ~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEdskLiYdlkDQGGEl~SLRYDLTVPfARylAmNki~si 151 (518)
T KOG1936|consen 72 EQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDSKLIYDLKDQGGELCSLRYDLTVPFARYLAMNKITSI 151 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhcccccceeEehhhcCCcEEEeecccccHHHHHHHHcccccc
Confidence 44788999999999999999999999998732 122221112222222 222333 3333334433212223
Q ss_pred ceeEEEeceecCCCC-CCCCCcCcccceeEEeccccCHHHHHH
Q 008808 315 GRVFETGPVFRAEDS-YTHRHLCEFTGLDVEMEIKKHYSEVMD 356 (553)
Q Consensus 315 ~rVfeIg~~FR~E~~-~t~rHl~EFt~lE~e~a~~~~~~~~m~ 356 (553)
+-|.||++||-+.. .|.-..-||.||||-.+. .|.-|+-
T Consensus 152 -kRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG--~~d~M~p 191 (518)
T KOG1936|consen 152 -KRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAG--QFDPMIP 191 (518)
T ss_pred -eeeeEEEEEeccCchhhchhhhhhhccCccccc--cCCCCCc
Confidence 45999999998753 244445799999997763 3544443
|
|
| >COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.0081 Score=65.63 Aligned_cols=88 Identities=19% Similarity=0.310 Sum_probs=65.6
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
++.+.+|++ +.|++|.|+|-|..++..+ .-.-+.|+|+++.+++-+....+ + .....+..|+||.|+|.|..
T Consensus 202 r~~i~~id~-~ig~tV~I~GeV~qikqT~-GPTVFtltDetg~i~aAAFe~aG-v-----RAyP~IevGdiV~ViG~V~~ 273 (715)
T COG1107 202 RTLIDDLDE-MIGKTVRIEGEVTQIKQTS-GPTVFTLTDETGAIWAAAFEEAG-V-----RAYPEIEVGDIVEVIGEVTR 273 (715)
T ss_pred cccHHHHHh-hcCceEEEEEEEEEEEEcC-CCEEEEEecCCCceehhhhccCC-c-----ccCCCCCCCceEEEEEEEee
Confidence 345666765 9999999999999999887 44557999999999998876532 1 22357999999999999976
Q ss_pred CCCccCCCceeEEEEEeEEEEee
Q 008808 172 PDVEIKGATQQVEVQIKKLYCVS 194 (553)
Q Consensus 172 ~~~~~~~~t~~~Ei~v~~i~~ls 194 (553)
.. +++-|.+..++.|.
T Consensus 274 r~-------g~lQiE~~~me~L~ 289 (715)
T COG1107 274 RD-------GRLQIEIEAMEKLT 289 (715)
T ss_pred cC-------CcEEEeehhhHHhh
Confidence 53 34555555555544
|
|
| >PLN02320 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.023 Score=62.51 Aligned_cols=116 Identities=18% Similarity=0.262 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEecceeeccCC-C-CCc-------cceeecCCCCceecccChh-----hHhhhccc-CC
Q 008808 249 RIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-E-GGS-------AVFRLDYKGQSACLAQSPQ-----LHKQMSIC-GD 313 (553)
Q Consensus 249 ~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-e-gga-------~~F~v~~~~~~~~L~~SPq-----l~lk~li~-~g 313 (553)
++...+++++++++..+||.||.||.|..... + .|- ..|.+. +.++||.-..| +|....+. ..
T Consensus 234 ~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~ie--~ed~~Li~TaE~Pl~~~~~~~ils~~d 311 (502)
T PLN02320 234 LLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSID--GSDQCLIGTAEIPVGGIHMDSILLESA 311 (502)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCCCcccccCceeEEC--CCceEEeecccccccccccccccCHhh
Confidence 46678899999999999999999999964321 1 111 123332 45677732222 33332221 11
Q ss_pred -CceeEEEeceecCCCCC------CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHH
Q 008808 314 -FGRVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDG 368 (553)
Q Consensus 314 -~~rVfeIg~~FR~E~~~------t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~ 368 (553)
-=|++++|+|||.|-+. +.--.-+|++.|... |. .-++..+..++|+..+..-
T Consensus 312 LPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~i-f~-~peqs~~e~e~ll~~~e~i 371 (502)
T PLN02320 312 LPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFV-IC-RPEESESFHEELIQIEEDL 371 (502)
T ss_pred CCceeEEeccccccccccCCCcCCCceeeeeeecccEEE-EE-CHHHHHHHHHHHHHHHHHH
Confidence 25899999999999541 111235899999874 54 4678888888877655433
|
|
| >PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.062 Score=54.92 Aligned_cols=93 Identities=11% Similarity=0.047 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC--CCCc----ccee-e-cCCCCceecc--cChhhHhhhccc---
Q 008808 245 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--EGGS----AVFR-L-DYKGQSACLA--QSPQLHKQMSIC--- 311 (553)
Q Consensus 245 ~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~--egga----~~F~-v-~~~~~~~~L~--~SPql~lk~li~--- 311 (553)
+.-+..+..|.+.+++.|...||-||+||++--... ..+. ..|. + +.-|+.+-|| ..|++.. +++
T Consensus 4 ~~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR--~~a~~~ 81 (272)
T PRK12294 4 SEQLIALKESETAFLKYFNKADYELVDFSVIEKLDWKQLNHEDLQQMGERSFWQHEHQIYALRNDFTDQLLR--YYSMYP 81 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhccccchhhhheeeeecCCCCEEEEcCCCCHHHHH--HHHhcC
Confidence 344556778888999999999999999999943221 1111 1222 2 2246778887 4455544 222
Q ss_pred CCCceeEEEeceecCCCCCCCCCcCcccceeEEecc
Q 008808 312 GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347 (553)
Q Consensus 312 ~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~ 347 (553)
.+..|.|.+|+|||++. +|+|+.+|.--
T Consensus 82 ~~~~Rl~Y~g~VfR~~~--------~~~Q~GvEliG 109 (272)
T PRK12294 82 TAATKVAYAGLIIRNNE--------AAVQVGIENYA 109 (272)
T ss_pred CCCceEEEeccEeccCC--------CcceeceEEEC
Confidence 24569999999999874 38898888753
|
|
| >TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.069 Score=58.60 Aligned_cols=116 Identities=17% Similarity=0.115 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHhH-hCCcEEEecceeeccC---CCCCcc-----ceeecCC------------------------
Q 008808 246 GIFRIQSQVGNIFRQFLL-SENFVEIHTPKLIAGS---SEGGSA-----VFRLDYK------------------------ 292 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~-~~gF~EV~TP~l~~~~---~egga~-----~F~v~~~------------------------ 292 (553)
...++...+.+++++++. +.||.||-+|.|+... ..|... .|.|...
T Consensus 221 ~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~ 300 (520)
T TIGR00415 221 KITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDK 300 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEEecCCCCcchhhcccccccccccccccc
Confidence 345677888899977665 5599999999997542 112111 3334211
Q ss_pred -----C-CceecccChhhHhhhccc------CC-CceeEEE-eceecCCCC--CCCCCcCcccceeEEeccccCHHHHHH
Q 008808 293 -----G-QSACLAQSPQLHKQMSIC------GD-FGRVFET-GPVFRAEDS--YTHRHLCEFTGLDVEMEIKKHYSEVMD 356 (553)
Q Consensus 293 -----~-~~~~L~~SPql~lk~li~------~g-~~rVfeI-g~~FR~E~~--~t~rHl~EFt~lE~e~a~~~~~~~~m~ 356 (553)
. ..++|+-+.+..+=.+.. .+ --|+|++ ++|||.|.. ++..-+-||+|.|.-. +. +.++..+
T Consensus 301 L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~-tpEea~e 378 (520)
T TIGR00415 301 LKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IA-EPEETEE 378 (520)
T ss_pred ccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-Ee-CHHHHHH
Confidence 1 156677776655432222 22 2488994 479999973 3333456999999876 55 6788888
Q ss_pred HHHHHHH
Q 008808 357 IVDRLFV 363 (553)
Q Consensus 357 ~~e~ll~ 363 (553)
..++++.
T Consensus 379 ~~e~mle 385 (520)
T TIGR00415 379 IRDKTLE 385 (520)
T ss_pred HHHHHHH
Confidence 8888775
|
The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases. |
| >cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE) | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.13 Score=41.50 Aligned_cols=72 Identities=17% Similarity=0.333 Sum_probs=50.5
Q ss_pred EEEEEeeec----cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEE
Q 008808 109 IRGRVHTTR----PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVE 184 (553)
Q Consensus 109 v~GrV~~~R----~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~E 184 (553)
+.|.|.+++ ..|++++|+.|.|+++.+.+++... ...+....+..|..|.|.|.+..-. +..+
T Consensus 2 i~g~v~~~~~~~~k~g~~~~~~~l~D~tg~~~~~~f~~------~~~~~~~~l~~g~~v~v~G~v~~~~-------~~~~ 68 (84)
T cd04485 2 VAGLVTSVRRRRTKKGKRMAFVTLEDLTGSIEVVVFPE------TYEKYRDLLKEDALLLVEGKVERRD-------GGLR 68 (84)
T ss_pred EEEEEEEeEEEEcCCCCEEEEEEEEeCCCeEEEEECHH------HHHHHHHHhcCCCEEEEEEEEEecC-------CceE
Confidence 445554432 3465689999999999999999853 1223456799999999999997532 2477
Q ss_pred EEEeEEEEe
Q 008808 185 VQIKKLYCV 193 (553)
Q Consensus 185 i~v~~i~~l 193 (553)
+.+.++..+
T Consensus 69 l~~~~i~~~ 77 (84)
T cd04485 69 LIAERIEDL 77 (84)
T ss_pred EEeeccccH
Confidence 777766544
|
The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis. |
| >PRK07373 DNA polymerase III subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.084 Score=57.70 Aligned_cols=85 Identities=15% Similarity=0.202 Sum_probs=63.7
Q ss_pred EeccccCCCCCCEEEEEEEEeeec----cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEE
Q 008808 94 VVGALNGSLKDQEVLIRGRVHTTR----PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVV 169 (553)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R----~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v 169 (553)
.+.+|.....|+.|+|.|.|.++| ..|..++|++|.|.++.+.+++..+ ...++...|..+.+|.|+|.|
T Consensus 270 ~~~~l~~~~~~~~v~vaG~I~~ik~~~TKkG~~maf~~leD~tG~ie~vvFp~------~y~~~~~~l~~~~~v~v~G~v 343 (449)
T PRK07373 270 NLSELEEQKEKTKVSAVVMLNEVKKIVTKKGDPMAFLQLEDLSGQSEAVVFPK------SYERISELLQVDARLIIWGKV 343 (449)
T ss_pred CHHHHhcccCCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCCEEEEECHH------HHHHHHHHhccCCEEEEEEEE
Confidence 344443334688999999999986 3466799999999999999999865 233455679999999999999
Q ss_pred ecCCCccCCCceeEEEEEeEEE
Q 008808 170 SVPDVEIKGATQQVEVQIKKLY 191 (553)
Q Consensus 170 ~~~~~~~~~~t~~~Ei~v~~i~ 191 (553)
...+ +.+.|.+.+|.
T Consensus 344 ~~~~-------~~~~liv~~i~ 358 (449)
T PRK07373 344 DRRD-------DQVQLIVEDAE 358 (449)
T ss_pred EecC-------CeEEEEEeEee
Confidence 6432 24566676664
|
|
| >cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.17 Score=42.78 Aligned_cols=77 Identities=13% Similarity=0.168 Sum_probs=56.7
Q ss_pred EEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEE
Q 008808 107 VLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQ 186 (553)
Q Consensus 107 V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~ 186 (553)
|++-|+|.++...+.++. +.|.|+++.|-|.+-......+ ..-...+..|++|.|.|.+..-. ++..|.
T Consensus 2 v~~vG~V~~~~~~~~~~~-~tL~D~TG~I~~~~W~~~~~~~---~~~~~~~~~g~~v~v~G~v~~~~-------g~~ql~ 70 (95)
T cd04478 2 VTLVGVVRNVEEQSTNIT-YTIDDGTGTIEVRQWLDDDNDD---SSEVEPIEEGTYVRVFGNLKSFQ-------GKKSIM 70 (95)
T ss_pred EEEEEEEEeeeEcccEEE-EEEECCCCcEEEEEeCCCCCcc---cccccccccCCEEEEEEEEcccC-------CeeEEE
Confidence 789999999998885655 7999999999999876432100 01135699999999999996432 356777
Q ss_pred EeEEEEee
Q 008808 187 IKKLYCVS 194 (553)
Q Consensus 187 v~~i~~ls 194 (553)
+..+..+.
T Consensus 71 i~~i~~v~ 78 (95)
T cd04478 71 AFSIRPVT 78 (95)
T ss_pred EEEEEEeC
Confidence 77777654
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam |
| >cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.25 Score=38.31 Aligned_cols=69 Identities=13% Similarity=0.176 Sum_probs=50.9
Q ss_pred EEEEEeeeccCC--CceEEEEEEeCC-eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEE
Q 008808 109 IRGRVHTTRPVG--NKLAFVVVRERV-STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEV 185 (553)
Q Consensus 109 v~GrV~~~R~~G--~kl~Fl~Lrd~~-~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei 185 (553)
|.|.|.+++... ++++++.|.|.+ +.+.|++..+. ...+...+..|++|.|.|.+.... ++..+
T Consensus 2 v~g~v~~~~~~~~~~~~~~~~l~D~~~~~i~~~~~~~~------~~~~~~~~~~g~~v~v~g~v~~~~-------~~~~l 68 (75)
T cd03524 2 IVGIVVAVEEIRTEGKVLIFTLTDGTGGTIRVTLFGEL------AEELENLLKEGQVVYIKGKVKKFR-------GRLQL 68 (75)
T ss_pred eEEEEEeecccccCCeEEEEEEEcCCCCEEEEEEEchH------HHHHHhhccCCCEEEEEEEEEecC-------CeEEE
Confidence 678888886553 578999999999 99999998652 223446799999999999996431 24566
Q ss_pred EEeEE
Q 008808 186 QIKKL 190 (553)
Q Consensus 186 ~v~~i 190 (553)
.+.++
T Consensus 69 ~~~~~ 73 (75)
T cd03524 69 IVESI 73 (75)
T ss_pred Eeeee
Confidence 65543
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco |
| >COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.049 Score=59.99 Aligned_cols=116 Identities=18% Similarity=0.204 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC-------CCC-CccceeecC-CCCceecccChhhHhhhcccC-----
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS-------SEG-GSAVFRLDY-KGQSACLAQSPQLHKQMSICG----- 312 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~-------~eg-ga~~F~v~~-~~~~~~L~~SPql~lk~li~~----- 312 (553)
-++++.+|.+.||+-|++-|..||--|+|+++. .++ |.+.|.+.. -+.++.|+-..|--.--++..
T Consensus 46 g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~drg~~~l~L~PTsEe~it~~~~~~i~SY 125 (500)
T COG0442 46 GLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKDRGDRPLALRPTSEEVITDMFRKWIRSY 125 (500)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcchhhEEEEccCCceeeeCCCcHHHHHHHHHHHhhhh
Confidence 367889999999999999999999999998732 122 335676654 468888886665332222211
Q ss_pred -C-CceeEEEeceecCCCC--CCCCCcCcccceeEEeccccCHHHHHHHHHHHHH
Q 008808 313 -D-FGRVFETGPVFRAEDS--YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 313 -g-~~rVfeIg~~FR~E~~--~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
+ -=++|||..+||+|-- ..---.-||+|=|.|-... +++++....+.++.
T Consensus 126 kdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~-~~e~a~~~y~~~~~ 179 (500)
T COG0442 126 KDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHA-DEEDAEETYEKMLD 179 (500)
T ss_pred hhCCcceeeeeeEEeccccCCCCccchheeeecccccccC-CHHHHHHHHHHHHH
Confidence 1 2489999999999962 1111357999999997665 78998888877764
|
|
| >cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70) | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.17 Score=43.85 Aligned_cols=86 Identities=14% Similarity=0.129 Sum_probs=57.8
Q ss_pred eccccCCCCCCEEEEEEEEeee---c---c---CCCceEEEEEEeC-CeEEEEEeecCCCCcchHHHHHHhcCCCCceEE
Q 008808 95 VGALNGSLKDQEVLIRGRVHTT---R---P---VGNKLAFVVVRER-VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 164 (553)
Q Consensus 95 i~~l~~~~~g~~V~v~GrV~~~---R---~---~G~kl~Fl~Lrd~-~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~ 164 (553)
|++|.+.. ..++|+|||.++ | . .| ++.-++|+|. ++.|+|.+-.. ...+|...|..|+++.
T Consensus 2 I~~L~p~~--~~~~I~~rV~~k~~~~~f~~~~~~g-~~~~~~l~De~~~~I~~t~~~~------~~~~f~~~l~eG~vy~ 72 (104)
T cd04474 2 ISSLNPYQ--NKWTIKARVTNKSDIRTWSNARGEG-KLFSFDLLDEDGGEIRATFFND------AVDKFYDLLEVGKVYY 72 (104)
T ss_pred hhHccCCC--CcEEEEEEEeeccccccccCCCCCc-EEEEEEEEECCCCEEEEEEehH------HHHHhhcccccccEEE
Confidence 34454333 358899999742 3 2 25 8888999999 89999999864 2345778899999999
Q ss_pred EEEEEecCCCc-cCCCceeEEEEEeE
Q 008808 165 VIGVVSVPDVE-IKGATQQVEVQIKK 189 (553)
Q Consensus 165 V~G~v~~~~~~-~~~~t~~~Ei~v~~ 189 (553)
|.+--+++..+ -+......||...+
T Consensus 73 i~~~~V~~a~~~y~~~~~~yeI~f~~ 98 (104)
T cd04474 73 ISKGSVKVANKKFNTLKNDYEITFNR 98 (104)
T ss_pred EeccEEeeccccCCCCCCcEEEEECC
Confidence 99855444322 22222348887653
|
RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct |
| >cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.17 Score=42.98 Aligned_cols=75 Identities=23% Similarity=0.299 Sum_probs=54.7
Q ss_pred EEEEEEEeeecc--CCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEE
Q 008808 107 VLIRGRVHTTRP--VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVE 184 (553)
Q Consensus 107 V~v~GrV~~~R~--~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~E 184 (553)
++|.|.|.+.+. .| .=+|+.|.|+++.|.|++-.... .+......|..||-|.|.|.+..-. .
T Consensus 1 ~~v~GeVs~~~~~~~s-GH~yFtlkD~~~~i~cv~f~~~g----~~~~~~~~l~~Gd~V~v~G~v~~y~----------q 65 (91)
T cd04482 1 YRVTGKVVEEPRTIEG-GHVFFKISDGTGEIDCAAYEPTK----EFRDVVRLLIPGDEVTVYGSVRPGT----------T 65 (91)
T ss_pred CEEEEEEeCCeecCCC-CCEEEEEECCCcEEEEEEECccc----ccccccCCCCCCCEEEEEEEEecCC----------E
Confidence 479999998754 34 34789999999999999886531 1112345699999999999986421 5
Q ss_pred EEEeEEEEeecC
Q 008808 185 VQIKKLYCVSRA 196 (553)
Q Consensus 185 i~v~~i~~ls~~ 196 (553)
|.++++.+++..
T Consensus 66 l~ve~l~~~glg 77 (91)
T cd04482 66 LNLEKLRVIRLA 77 (91)
T ss_pred EEEEEEEECCCc
Confidence 788888876653
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende |
| >cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1) | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.88 Score=36.80 Aligned_cols=63 Identities=13% Similarity=0.197 Sum_probs=47.6
Q ss_pred cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEee
Q 008808 118 PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVS 194 (553)
Q Consensus 118 ~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls 194 (553)
..|++++++.|.|+++.+.+++..... .....+..|.+|.|.|.+..-. +..++.+.++..+.
T Consensus 15 k~g~~~~~~~l~D~tg~i~~~~f~~~~-------~~~~~l~~g~~v~v~G~v~~~~-------~~~~l~~~~i~~l~ 77 (83)
T cd04492 15 KNGKPYLALTLQDKTGEIEAKLWDASE-------EDEEKFKPGDIVHVKGRVEEYR-------GRLQLKIQRIRLVT 77 (83)
T ss_pred cCCCcEEEEEEEcCCCeEEEEEcCCCh-------hhHhhCCCCCEEEEEEEEEEeC-------CceeEEEEEEEECC
Confidence 346579999999999999999986421 2246799999999999996421 24788888877554
|
Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases. |
| >COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.068 Score=58.33 Aligned_cols=29 Identities=24% Similarity=0.597 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhHh--CCcEEEecceeec
Q 008808 249 RIQSQVGNIFRQFLLS--ENFVEIHTPKLIA 277 (553)
Q Consensus 249 ~~Rs~i~~~iR~fl~~--~gF~EV~TP~l~~ 277 (553)
.++..|++..|++|.. .+++||+||+|..
T Consensus 41 ~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p 71 (558)
T COG0423 41 ELKNNIKEAWRKSFVTEREDVVEIDTPIILP 71 (558)
T ss_pred HHHHHHHHHHHHHHeeccCCeEEecccccCc
Confidence 4688899999999975 6899999999864
|
|
| >PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif) | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.29 Score=42.54 Aligned_cols=79 Identities=14% Similarity=0.232 Sum_probs=52.3
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHH-hcCCCCceEEEEEEEec
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGVVSV 171 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~-~~l~~esiV~V~G~v~~ 171 (553)
+.+.++.....+..|+|.|+|.+.-..- + |.++|.++.|+|-++.+. |. ..+..++-|.|.|.|-+
T Consensus 23 ~TV~~a~~~~Dd~~V~L~G~Iv~~l~~d-~---Y~F~D~TG~I~VeId~~~---------w~g~~vt~~~~Vri~GeVDk 89 (103)
T PF04076_consen 23 TTVAQAKNAKDDTPVTLEGNIVKQLGDD-K---YLFRDATGEIEVEIDDDV---------WRGQTVTPDDKVRISGEVDK 89 (103)
T ss_dssp --HHHHTTS-SSEEEEEEEEEEEEEETT-E---EEEEETTEEEEEE--GGG---------STT----TTSEEEEEEEEEE
T ss_pred EeHHHHhhCcCCCeEEEEEEEEEEecCC-E---EEEECCCCcEEEEEChhh---------cCCcccCCCCEEEEEEEEeC
Confidence 3444555568899999999988765433 3 789999999999988752 22 35899999999999975
Q ss_pred CCCccCCCceeEEEEEeEEE
Q 008808 172 PDVEIKGATQQVEVQIKKLY 191 (553)
Q Consensus 172 ~~~~~~~~t~~~Ei~v~~i~ 191 (553)
.. ...||.|..|+
T Consensus 90 ~~-------~~~~IdV~~I~ 102 (103)
T PF04076_consen 90 DW-------NKTEIDVDRIE 102 (103)
T ss_dssp ET-------TEEEEEEEEEE
T ss_pred CC-------CceEEEEEEEE
Confidence 43 14677777663
|
Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A. |
| >cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1) | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.52 Score=40.05 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=51.8
Q ss_pred EEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcc-------------hHH-HHHHhcCCCCceEEEEEEEecCCC
Q 008808 109 IRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVS-------------KEM-VRFVRSLSNESIVDVIGVVSVPDV 174 (553)
Q Consensus 109 v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~-------------~~~-~~~~~~l~~esiV~V~G~v~~~~~ 174 (553)
|-|+|.+++... .-.-+.|.|+++.|-|++=......+ ..| .+....+..|++|.|.|.+..-.
T Consensus 2 ivG~V~sv~~~~-~~~~~tLdDgTG~Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~vvrV~G~i~~fr- 79 (92)
T cd04483 2 ILGTVVSRRERE-TFYSFGVDDGTGVVNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKVLEIGDLLRVRGSIRTYR- 79 (92)
T ss_pred eEEEEEEEEecC-CeEEEEEecCCceEEEEEEcCcCcccccccccccccccccccccccccccCCCCEEEEEEEEeccC-
Confidence 679999998887 44557999999999999876432100 001 02345699999999999997532
Q ss_pred ccCCCceeEEEEEeEEE
Q 008808 175 EIKGATQQVEVQIKKLY 191 (553)
Q Consensus 175 ~~~~~t~~~Ei~v~~i~ 191 (553)
++..|.++.++
T Consensus 80 ------g~~ql~i~~~~ 90 (92)
T cd04483 80 ------GEREINASVVY 90 (92)
T ss_pred ------CeeEEEEEEEE
Confidence 24566666654
|
Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization. |
| >PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.78 Score=50.57 Aligned_cols=36 Identities=28% Similarity=0.606 Sum_probs=27.7
Q ss_pred cCCC-CcceeeecHHHHHHHHcCCCCcccc--ccccCCC
Q 008808 513 YGAP-PHGGFGVGLERVVMLFCGLNNIRKT--SLYPRDP 548 (553)
Q Consensus 513 ~G~p-P~~G~GiGidRLvm~l~g~~nIrdv--~~FPr~p 548 (553)
||++ |...++|++|||+|...+.++||.. -.||+.|
T Consensus 312 fDI~~pV~aFELDLErL~~i~~~~~dir~~~Y~~~SkFP 350 (529)
T PRK06253 312 YGIDVPVMNLGLGVERLAMILYGAEDVREMVYPQFYEWE 350 (529)
T ss_pred cCCCCceEEEEEeHHHHHhhhcCcccccccCcCCCCCCC
Confidence 4554 5689999999999999998899984 3455555
|
|
| >KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.16 Score=52.87 Aligned_cols=109 Identities=21% Similarity=0.259 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccC----C----CCCccceeecC-CCCceecccChhhHhhhcccCCC----
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----S----EGGSAVFRLDY-KGQSACLAQSPQLHKQMSICGDF---- 314 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~----egga~~F~v~~-~~~~~~L~~SPql~lk~li~~g~---- 314 (553)
.|...++++.++.-|.+-|=.+|.-|+|.+.. + .-|.+.|.+.. .|+.++|...-|=-.-.+|+.-.
T Consensus 52 ~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl~Dr~gkq~cL~pThEE~iT~lmat~~~lsy 131 (457)
T KOG2324|consen 52 LRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRLHDRKGKQMCLTPTHEEDITALMATYIPLSY 131 (457)
T ss_pred HHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEeeccCCCEeccCCchHHHHHHHHHhcCcccc
Confidence 46678899999999999999999999996532 1 12566787743 67788886544433333333222
Q ss_pred ----ceeEEEeceecCCCC-C-CCCCcCcccceeEEeccccCHHHHHHH
Q 008808 315 ----GRVFETGPVFRAEDS-Y-THRHLCEFTGLDVEMEIKKHYSEVMDI 357 (553)
Q Consensus 315 ----~rVfeIg~~FR~E~~-~-t~rHl~EFt~lE~e~a~~~~~~~~m~~ 357 (553)
=|||+||+-||+|-- + +.----||.|=|+| +|..|-+..|+.
T Consensus 132 kqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmY-sFd~~~etA~qT 179 (457)
T KOG2324|consen 132 KQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMY-SFDSDEETAQQT 179 (457)
T ss_pred ccCcEEeeeechhhhhccCccccchhhHHHHHhhhh-cccCCHHHHHHH
Confidence 389999999999941 0 11123699999999 577665555553
|
|
| >PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.33 Score=54.65 Aligned_cols=110 Identities=17% Similarity=0.234 Sum_probs=67.3
Q ss_pred HHHHHHHHHhHhCCcEEEecceeeccCC--C----CCc-cceee-cCC-CCceecccC--hhhHhhhccc-CC--CceeE
Q 008808 253 QVGNIFRQFLLSENFVEIHTPKLIAGSS--E----GGS-AVFRL-DYK-GQSACLAQS--PQLHKQMSIC-GD--FGRVF 318 (553)
Q Consensus 253 ~i~~~iR~fl~~~gF~EV~TP~l~~~~~--e----gga-~~F~v-~~~-~~~~~L~~S--Pql~lk~li~-~g--~~rVf 318 (553)
++.+.+|++|...||.|+-|..+++..- + ... ....+ |-. ....+||.| |.|..-..-- -+ --|+|
T Consensus 363 ~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~~~~~~~~lF 442 (552)
T PRK09616 363 KLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPEEDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNKHREYPQKIF 442 (552)
T ss_pred HHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCCCCeEEEcCCCccchheEeccchHHHHHHHHhccCCCCCeeEE
Confidence 4466689999999999999999975411 0 001 12222 222 233567765 4443221100 11 13899
Q ss_pred EEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHHH
Q 008808 319 ETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFV 363 (553)
Q Consensus 319 eIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll~ 363 (553)
|||+||+++.. +..|..|++++-+-++-. .++.++..+++.++.
T Consensus 443 EiG~Vf~~~~~-~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~ 487 (552)
T PRK09616 443 EIGDVVLIDES-TETGTRTERKLAAAIAHSEASFTEIKSVVQALLR 487 (552)
T ss_pred EeeEEEecCCc-cccCcchhhEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999998753 345778999998766531 257777777776664
|
|
| >PRK07374 dnaE DNA polymerase III subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.33 Score=58.99 Aligned_cols=85 Identities=14% Similarity=0.197 Sum_probs=63.3
Q ss_pred eccccCCCCCCEEEEEEEEeeec----cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEe
Q 008808 95 VGALNGSLKDQEVLIRGRVHTTR----PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVS 170 (553)
Q Consensus 95 i~~l~~~~~g~~V~v~GrV~~~R----~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~ 170 (553)
+.+|.....|+.|+|.|.|.++| .+|..++|++|.|.++.+.+++..+ ...++...|..+.+|.|+|.|.
T Consensus 991 ~~~l~~~~~~~~v~v~g~i~~~k~~~Tk~G~~maf~~leD~tg~~e~vvFp~------~y~~~~~~l~~~~~~~v~g~v~ 1064 (1170)
T PRK07374 991 LSSLEEQPDKAKVSAIAMIPEMKQVTTRKGDRMAILQLEDLTGSCEAVVFPK------SYERLSDHLMTDTRLLVWAKVD 1064 (1170)
T ss_pred HHHHhcccCCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCCEEEEECHH------HHHHHHHHhccCCEEEEEEEEE
Confidence 44443334688999999999985 3466799999999999999999865 2344556799999999999996
Q ss_pred cCCCccCCCceeEEEEEeEEEE
Q 008808 171 VPDVEIKGATQQVEVQIKKLYC 192 (553)
Q Consensus 171 ~~~~~~~~~t~~~Ei~v~~i~~ 192 (553)
..+ +.+.|.+.++.-
T Consensus 1065 ~~~-------~~~~~~~~~i~~ 1079 (1170)
T PRK07374 1065 RRD-------DRVQLIIDDCRE 1079 (1170)
T ss_pred ecC-------CeEEEEEeeeec
Confidence 532 245666666643
|
|
| >COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.15 Score=57.26 Aligned_cols=116 Identities=21% Similarity=0.153 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEecceeecc---CCCCCcc-----ceeecCCCCceecccChh-----hHhhhcccC--C
Q 008808 249 RIQSQVGNIFRQFLLSENFVEIHTPKLIAG---SSEGGSA-----VFRLDYKGQSACLAQSPQ-----LHKQMSICG--D 313 (553)
Q Consensus 249 ~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~---~~egga~-----~F~v~~~~~~~~L~~SPq-----l~lk~li~~--g 313 (553)
.+|..+.+++|.-....||.||.||.|... ...|+.. .|.+..-++.+.|+.--- .|++.+-+- -
T Consensus 221 ~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~~~~~~~~lKpmNCpgh~~ifk~~~~SYR~L 300 (589)
T COG0441 221 TIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTESDDREYALKPMNCPGHILIFKSGLRSYREL 300 (589)
T ss_pred cHHHHHHHHHHHHHHhcCceEecCCeeeecccchhccchhhccccceeeccCChhheeeeccCHhHHHHHhcCCcceecc
Confidence 578889999999999999999999998532 2233222 222222223333332221 333332211 1
Q ss_pred CceeEEEeceecCCCCC---CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHH
Q 008808 314 FGRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIF 366 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~---t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~ 366 (553)
.-|++|+|.|||+|.|. +.+-+-+|||=|.-. |. ..+.+.+.+.+.+..+.
T Consensus 301 P~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHi-fc-~~dQi~~E~~~~~~~i~ 354 (589)
T COG0441 301 PLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHI-FC-TPDQIKDEFKGILELIL 354 (589)
T ss_pred chhhhhcceeecccCcchhhccccccceeecccce-ec-cHHHHHHHHHHHHHHHH
Confidence 24899999999999862 334567899998753 33 24566666655555443
|
|
| >cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit | Back alignment and domain information |
|---|
Probab=93.24 E-value=1.4 Score=36.36 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=44.8
Q ss_pred EEEEEEEeeec--cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHH--HHHhcCCCCceEEEEEEEec
Q 008808 107 VLIRGRVHTTR--PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV--RFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 107 V~v~GrV~~~R--~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~--~~~~~l~~esiV~V~G~v~~ 171 (553)
|.++|-|.++| ..| +- |+.|-|.++++.+++..+. .. ++...|..+.+|.|+|.+..
T Consensus 2 v~i~GiI~~v~~TK~g-~~-~~~leD~~G~~Ev~~F~~~------~~~~~~~~~l~~d~~v~v~g~v~~ 62 (79)
T cd04490 2 VSIIGMVNDVRSTKNG-HR-IVELEDTTGRITVLLTKDK------EELFEEAEDILPDEVIGVSGTVSK 62 (79)
T ss_pred EEEEEEEeEEEEcCCC-CE-EEEEECCCCEEEEEEeCch------hhhhhhhhhccCCCEEEEEEEEec
Confidence 57788888876 234 34 9999999999999999763 23 45567999999999999943
|
PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain. |
| >TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.079 Score=59.10 Aligned_cols=31 Identities=26% Similarity=0.566 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhH-hCCcEEEecceeecc
Q 008808 248 FRIQSQVGNIFRQFLL-SENFVEIHTPKLIAG 278 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~-~~gF~EV~TP~l~~~ 278 (553)
..++..|.+..|++|. ..|++||+||+|.+.
T Consensus 37 ~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~ 68 (551)
T TIGR00389 37 AVLKNNIKNAWRKFFIKNERVLEIDTPIITPE 68 (551)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeeccccCCH
Confidence 4678899999999995 789999999998743
|
This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases. |
| >COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.35 Score=52.21 Aligned_cols=114 Identities=16% Similarity=0.265 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC-CC-C------ccceeecCCCCceecccChhhHhhh-----ccc-C
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-EG-G------SAVFRLDYKGQSACLAQSPQLHKQM-----SIC-G 312 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-eg-g------a~~F~v~~~~~~~~L~~SPql~lk~-----li~-~ 312 (553)
+-++--++++++=++..++||.||.+|.|+...+ .| | -..|++. +..+||.-.-|.-+-- .+- .
T Consensus 173 ~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~--~~~~~LipTaEvpl~~l~~~Eil~~~ 250 (429)
T COG0172 173 GARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVE--DPDLYLIPTAEVPLTNLHRDEILDEE 250 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCCCCCcccceEec--CCCEEEEecchhhhHHhhcccccccc
Confidence 3445566788888888899999999999974321 11 1 1134443 2367876555543322 222 2
Q ss_pred C-CceeEEEeceecCCCCC---CCC---CcCcccceeEEeccccCHHHHHHHHHHHHHH
Q 008808 313 D-FGRVFETGPVFRAEDSY---THR---HLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (553)
Q Consensus 313 g-~~rVfeIg~~FR~E~~~---t~r---Hl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~ 364 (553)
. --+++-.++|||.|-.. +.| -..+|..+|.-. |. .-++-.+..|+|+..
T Consensus 251 ~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~-~~-~Pe~S~~~~E~m~~~ 307 (429)
T COG0172 251 DLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVV-IT-KPEESEEELEEMLGN 307 (429)
T ss_pred cCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEE-Ee-CcchhHHHHHHHHHH
Confidence 2 35778889999999532 111 234899999853 44 467777777777654
|
|
| >PRK05673 dnaE DNA polymerase III subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.39 Score=58.31 Aligned_cols=87 Identities=21% Similarity=0.309 Sum_probs=64.9
Q ss_pred EeccccCCCCCCEEEEEEEEeeecc----CCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEE
Q 008808 94 VVGALNGSLKDQEVLIRGRVHTTRP----VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVV 169 (553)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R~----~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v 169 (553)
.+.+|.....|+.|.+.|-|.++|. .|+.++|+.|.|.++.+.+++..+ ...++...|..|++|.|+|.|
T Consensus 967 ~~~~l~~~~~g~~V~v~G~I~~vk~~~TKkG~~mafltLeD~TG~iEvviFp~------~ye~~~~~L~~g~iV~V~GkV 1040 (1135)
T PRK05673 967 RLADLEPTEGGSVVTVAGLVVSVRRRVTKRGNKMAIVTLEDLSGRIEVMLFSE------ALEKYRDLLEEDRIVVVKGQV 1040 (1135)
T ss_pred CHHHHhccccCceEEEEEEEEEEEecccCCCCeEEEEEEEeCCCcEEEEECHH------HHHHHHHHhccCCEEEEEEEE
Confidence 3444433345889999999999853 365799999999999999999864 234556779999999999999
Q ss_pred ecCCCccCCCceeEEEEEeEEEEe
Q 008808 170 SVPDVEIKGATQQVEVQIKKLYCV 193 (553)
Q Consensus 170 ~~~~~~~~~~t~~~Ei~v~~i~~l 193 (553)
.... +.+.|.+.++.-+
T Consensus 1041 e~~~-------~~~qlii~~I~~L 1057 (1135)
T PRK05673 1041 SFDD-------GGLRLTAREVMDL 1057 (1135)
T ss_pred EecC-------CeEEEEEeecccH
Confidence 6532 2467777766544
|
|
| >TIGR00156 conserved hypothetical protein TIGR00156 | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.77 Score=41.36 Aligned_cols=79 Identities=13% Similarity=0.247 Sum_probs=58.4
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHh-cCCCCceEEEEEEEec
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR-SLSNESIVDVIGVVSV 171 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~-~l~~esiV~V~G~v~~ 171 (553)
+.+.+.....++..|.+.|.|...-..- + |.+||++++|+|-++.+ .|.. .+.++|-|.|.|.|-+
T Consensus 46 ~tV~~a~~~~Ddt~V~L~G~Iv~~l~~d-~---Y~F~D~TG~I~VeId~~---------~w~G~~v~p~d~V~I~GeVDk 112 (126)
T TIGR00156 46 MTVDFAKSMHDGASVTLRGNIISHIGDD-R---YVFRDKSGEINVVIPAA---------VWNGREVQPKDMVNISGSLDK 112 (126)
T ss_pred EeHHHHhhCCCCCEEEEEEEEEEEeCCc-e---EEEECCCCCEEEEECHH---------HcCCCcCCCCCEEEEEEEECC
Confidence 4555555568899999999998765443 2 79999999999998764 3443 5899999999999974
Q ss_pred CCCccCCCceeEEEEEeEEE
Q 008808 172 PDVEIKGATQQVEVQIKKLY 191 (553)
Q Consensus 172 ~~~~~~~~t~~~Ei~v~~i~ 191 (553)
.- ...||-|.+|+
T Consensus 113 ~~-------~~~~IdV~~I~ 125 (126)
T TIGR00156 113 KS-------APAEVDVTHIQ 125 (126)
T ss_pred CC-------CCeEEEEEEEE
Confidence 32 13577776664
|
As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae. |
| >PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.39 Score=48.63 Aligned_cols=75 Identities=17% Similarity=0.242 Sum_probs=52.7
Q ss_pred CEEEEEEEEeeeccC----CCceEEEEEEeCCe--EEEEEeecCCCC-cchHHHHHHhcCCCCceEEEEEEEecCCCccC
Q 008808 105 QEVLIRGRVHTTRPV----GNKLAFVVVRERVS--TVQCLATVKPDS-VSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK 177 (553)
Q Consensus 105 ~~V~v~GrV~~~R~~----G~kl~Fl~Lrd~~~--~iQvv~~~~~~~-~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~ 177 (553)
+.|.|.|.|..+.-. . +-+|+.|-|+++ .|.|++...... .+. . ...+ .|++|.|.|++..
T Consensus 67 ~~v~i~G~Vv~~~~~~~~~~-~~~~l~iDD~Sg~~~i~~~~~~~~~~~~~l---~-~~~~-~G~~V~VkG~vsr------ 134 (256)
T PF10451_consen 67 RWVRIVGVVVGIDYKWIENE-DRIILTIDDSSGANTIECKCSKSSYLSMGL---P-INDL-IGKVVEVKGTVSR------ 134 (256)
T ss_dssp -EEEEEEEEEEEEEEE-BBT-CEEEEEEE-SSCS-EEEEEEEHHHHHCCCH---H-CTT--TT-EEEEEEEEES------
T ss_pred EEEEEEEEEEEEEEEeeccc-ceEEEEEeCCCCceeEEEEEEcccccccCC---C-ccCC-CCcEEEEEEEEcc------
Confidence 568999999998754 4 678999999999 899999865210 111 1 2345 9999999999982
Q ss_pred CCceeEEEEEeEEEEee
Q 008808 178 GATQQVEVQIKKLYCVS 194 (553)
Q Consensus 178 ~~t~~~Ei~v~~i~~ls 194 (553)
+..+|.++.+..+.
T Consensus 135 ---~~~ql~ve~i~~~~ 148 (256)
T PF10451_consen 135 ---NERQLDVERIELVR 148 (256)
T ss_dssp ---SSEEEEEEEEEEET
T ss_pred ---CcEEEEEEEEEccC
Confidence 24688888888764
|
Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A. |
| >PRK06826 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.72 Score=56.09 Aligned_cols=80 Identities=18% Similarity=0.301 Sum_probs=61.3
Q ss_pred CCCCEEEEEEEEeeec----cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccC
Q 008808 102 LKDQEVLIRGRVHTTR----PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK 177 (553)
Q Consensus 102 ~~g~~V~v~GrV~~~R----~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~ 177 (553)
..|..|+|.|.|.++| ..|..++|+.|.|.++.+.+++..+ ...++...|..+.+|.|+|.|....
T Consensus 989 ~~~~~v~v~g~i~~~~~~~tk~G~~maf~~leD~~g~~e~~vfp~------~~~~~~~~l~~~~~~~v~g~v~~~~---- 1058 (1151)
T PRK06826 989 KDGDKVIIGGIITEVKRKTTRNNEMMAFLTLEDLYGTVEVIVFPK------VYEKYRSLLNEDNIVLIKGRVSLRE---- 1058 (1151)
T ss_pred cCCcEEEEEEEEEEeEeeccCCCCeEEEEEEEECCCcEEEEECHH------HHHHHHHHhccCCEEEEEEEEEecC----
Confidence 3578999999999986 3465699999999999999999864 2345566799999999999996422
Q ss_pred CCceeEEEEEeEEEEe
Q 008808 178 GATQQVEVQIKKLYCV 193 (553)
Q Consensus 178 ~~t~~~Ei~v~~i~~l 193 (553)
.+.+.+.+.++.-+
T Consensus 1059 --~~~~~~~~~~~~~l 1072 (1151)
T PRK06826 1059 --DEEPKLICEEIEPL 1072 (1151)
T ss_pred --CCceEEEEeeeecH
Confidence 12366777766544
|
|
| >PRK06920 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.71 Score=55.81 Aligned_cols=86 Identities=15% Similarity=0.258 Sum_probs=63.5
Q ss_pred EeccccCCCCCCEEEEEEEEeeec----cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEE
Q 008808 94 VVGALNGSLKDQEVLIRGRVHTTR----PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVV 169 (553)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R----~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v 169 (553)
.+.+|. ...|+.|+|.|.|.++| ..|++++|++|-|.++.+.+++..+ ...++...|..+.+|.|+|.|
T Consensus 934 ~~~~l~-~~~~~~v~v~g~i~~~~~~~tk~g~~maf~~leD~tg~~e~~vFp~------~y~~~~~~l~~~~~~~v~G~v 1006 (1107)
T PRK06920 934 SLAQAM-RHKKKVQRAIVYITSVKVIRTKKGQKMAFITFCDQNDEMEAVVFPE------TYIHFSDKLQEGAIVLVDGTI 1006 (1107)
T ss_pred CHHHHh-hcCCCEEEEEEEEEEeEeecCCCCCeEEEEEEeeCCCcEEEEECHH------HHHHHHHHhccCCEEEEEEEE
Confidence 344443 24578999999999985 3466799999999999999999865 233456679999999999999
Q ss_pred ecCCCccCCCceeEEEEEeEEEEe
Q 008808 170 SVPDVEIKGATQQVEVQIKKLYCV 193 (553)
Q Consensus 170 ~~~~~~~~~~t~~~Ei~v~~i~~l 193 (553)
.... +...|.+.++.-+
T Consensus 1007 ~~~~-------~~~~~~~~~i~~l 1023 (1107)
T PRK06920 1007 ELRN-------HKLQWIVNGLYPL 1023 (1107)
T ss_pred EecC-------CcEEEEEeecccH
Confidence 6432 2356666666433
|
|
| >cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14) | Back alignment and domain information |
|---|
Probab=92.13 E-value=1.4 Score=38.00 Aligned_cols=54 Identities=22% Similarity=0.190 Sum_probs=41.8
Q ss_pred CCCCCEEEEEEEEeeeccCCCceEEEEEEe-CCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 101 SLKDQEVLIRGRVHTTRPVGNKLAFVVVRE-RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 101 ~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd-~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
...|+.|++-|+|.+.+... +.+.. +++.++|.++... .+..+-+|+|.|+|..
T Consensus 12 ~f~gk~V~ivGkV~~~~~~~-----~~~~~~Dg~~v~v~l~~~~------------~~~~~~~vEViG~V~~ 66 (101)
T cd04479 12 QFVGKTVRIVGKVEKVDGDS-----LTLISSDGVNVTVELNRPL------------DLPISGYVEVIGKVSP 66 (101)
T ss_pred hhCCCEEEEEEEEEEecCCe-----EEEEcCCCCEEEEEeCCCC------------CcccCCEEEEEEEECC
Confidence 58899999999999998653 45554 4469999988642 3566789999999863
|
RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer. |
| >PRK05672 dnaE2 error-prone DNA polymerase; Validated | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.66 Score=55.93 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=64.2
Q ss_pred cccCCCCCCEEEEEEEEeeeccC--CCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC
Q 008808 97 ALNGSLKDQEVLIRGRVHTTRPV--GNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV 174 (553)
Q Consensus 97 ~l~~~~~g~~V~v~GrV~~~R~~--G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~ 174 (553)
+|.....|..|+|+|.|..++.. .+.++|+.|-|.++.+.+++..+ ...++...|..|.++.|+|.|....
T Consensus 946 ~l~~~~~~~~v~v~g~i~~~~~~~TkkGmaf~~leD~~g~~e~~ifp~------~~~~~~~~l~~~~~~~v~g~v~~~~- 1018 (1046)
T PRK05672 946 ELLDVEDGRRVRVAGVVTHRQRPGTASGVTFLTLEDETGMVNVVVWPG------LWERQRREALGARLLLVRGRVQNAE- 1018 (1046)
T ss_pred HHhhccCCCEEEEEEEEEEEEEecCCCceEEEEEecCCCCEEEEECHH------HHHHHHHHhccCCEEEEEEEEEecC-
Confidence 44433468899999999988654 22399999999999999999865 2334556799999999999997532
Q ss_pred ccCCCceeEEEEEeEEEEeec
Q 008808 175 EIKGATQQVEVQIKKLYCVSR 195 (553)
Q Consensus 175 ~~~~~t~~~Ei~v~~i~~ls~ 195 (553)
+.+.|.+.++.-+..
T Consensus 1019 ------~~~~~~~~~i~~~~~ 1033 (1046)
T PRK05672 1019 ------GVRHLVADRLEDLSP 1033 (1046)
T ss_pred ------CeEEEEEeeeechHH
Confidence 246777877765543
|
|
| >PRK10053 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.62 E-value=1.2 Score=40.25 Aligned_cols=79 Identities=13% Similarity=0.243 Sum_probs=58.5
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHh-cCCCCceEEEEEEEec
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR-SLSNESIVDVIGVVSV 171 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~-~l~~esiV~V~G~v~~ 171 (553)
..+.+.....++..|.|.|.|...=..- + |.+||+++.|+|-++.+ .|.. .+.+++-|.|.|.|-+
T Consensus 50 ~tV~~a~~~~Dd~~V~L~G~Iv~~lg~d-~---Y~F~D~tG~I~VeID~~---------~w~G~~v~p~~kV~I~GevDk 116 (130)
T PRK10053 50 MTVEQAKTMHDGATVSLRGNLIDHKGDD-R---YVFRDKSGEINVIIPAA---------VFDGREVQPDQMININGSLDK 116 (130)
T ss_pred EEHHHhhcCcCCCeEEEEEEEEEEeCCc-e---EEEECCCCcEEEEeCHH---------HcCCCcCCCCCEEEEEEEECC
Confidence 3555555568899999999997653322 2 78999999999998865 3443 5999999999999965
Q ss_pred CCCccCCCceeEEEEEeEEE
Q 008808 172 PDVEIKGATQQVEVQIKKLY 191 (553)
Q Consensus 172 ~~~~~~~~t~~~Ei~v~~i~ 191 (553)
.- ...||-|..|+
T Consensus 117 ~~-------~~~~IdV~~i~ 129 (130)
T PRK10053 117 KS-------APPVVRVTHLQ 129 (130)
T ss_pred CC-------CCeEEEEEEEe
Confidence 32 13677777664
|
|
| >COG3111 Periplasmic protein with OB-fold [Function unknown] | Back alignment and domain information |
|---|
Probab=91.54 E-value=1.2 Score=39.56 Aligned_cols=82 Identities=17% Similarity=0.160 Sum_probs=59.7
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHH-hcCCCCceEEEEEEEe
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGVVS 170 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~-~~l~~esiV~V~G~v~ 170 (553)
-..+.+-...+.+..|+++|-|..--..- . +++||.+++|++-++.+. |. ..+.+.|-|.|.|.|-
T Consensus 45 ~~TV~~Ak~~~Dda~V~l~GnIv~qi~~D---~-y~FrD~sGeI~VeIdd~~---------w~g~tv~P~dkV~I~GevD 111 (128)
T COG3111 45 VTTVDQAKTLHDDAWVSLEGNIVRQIGDD---R-YVFRDASGEINVDIDDKV---------WNGQTVTPKDKVRIQGEVD 111 (128)
T ss_pred eeEHHHhhccccCCeEEEEeeEEEeeCCc---e-EEEEcCCccEEEEecccc---------cCCcccCcccEEEEEeEEc
Confidence 34555444567899999999986543332 2 789999999999998762 33 3599999999999986
Q ss_pred cCCCccCCCceeEEEEEeEEEEe
Q 008808 171 VPDVEIKGATQQVEVQIKKLYCV 193 (553)
Q Consensus 171 ~~~~~~~~~t~~~Ei~v~~i~~l 193 (553)
+-- ...||.|..|+.+
T Consensus 112 k~~-------~~~eIdV~~I~k~ 127 (128)
T COG3111 112 KDW-------NSVEIDVKHIEKL 127 (128)
T ss_pred CCC-------ccceeEhhheEec
Confidence 542 1468888777654
|
|
| >PRK07279 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=90.70 E-value=1.2 Score=53.37 Aligned_cols=76 Identities=14% Similarity=0.281 Sum_probs=58.1
Q ss_pred CCCEEEEEEEEeeec----c-CCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccC
Q 008808 103 KDQEVLIRGRVHTTR----P-VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK 177 (553)
Q Consensus 103 ~g~~V~v~GrV~~~R----~-~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~ 177 (553)
.|..+.+.|+|.++| . .|+.++|++|-|.++.+.+++..+ ...++...|..+.+|.|+|.|....
T Consensus 883 ~~~~~~~~~~i~~~~~~~tk~~g~~maf~~leD~~g~ie~~vFp~------~y~~~~~~l~~~~~~~v~G~v~~~~---- 952 (1034)
T PRK07279 883 KNSEATILVQIQSIRVIRTKTKGQQMAFLSVTDTKKKLDVTLFPE------TYRQYKDELKEGKFYYLKGKIQERD---- 952 (1034)
T ss_pred cCCcceEEEEEEEEEEEEEcCCCCeEEEEEEeeCCCcEEEEECHH------HHHHHHHHhccCCEEEEEEEEEecC----
Confidence 367788999998764 2 577899999999999999999865 2345567799999999999996532
Q ss_pred CCceeEEEEEeEEE
Q 008808 178 GATQQVEVQIKKLY 191 (553)
Q Consensus 178 ~~t~~~Ei~v~~i~ 191 (553)
+.+.|.+.++.
T Consensus 953 ---~~~~l~~~~i~ 963 (1034)
T PRK07279 953 ---GRLQMVLQQIQ 963 (1034)
T ss_pred ---CeeEEEEeeee
Confidence 24566666653
|
|
| >TIGR00617 rpa1 replication factor-a protein 1 (rpa1) | Back alignment and domain information |
|---|
Probab=90.40 E-value=2.2 Score=48.63 Aligned_cols=99 Identities=12% Similarity=0.169 Sum_probs=71.3
Q ss_pred ceEEeccccCCCCCCEEEEEEEEeee---c------cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCc
Q 008808 91 EWTVVGALNGSLKDQEVLIRGRVHTT---R------PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNES 161 (553)
Q Consensus 91 ~~~~i~~l~~~~~g~~V~v~GrV~~~---R------~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~es 161 (553)
.++.|.+|++.. + ..+|+|||.++ | ..| |+.-++|.|+++.|++.+... ...+|...|..|+
T Consensus 179 ~~~pI~~L~py~-~-~wtIkaRV~~Ks~ir~~~~~~geg-kvfsv~L~Degg~Irat~f~~------~~dkf~~~l~eG~ 249 (608)
T TIGR00617 179 RVMPIASLSPYQ-N-KWTIKARVTNKSEIRTWSNARGEG-KLFNVELLDESGEIRATAFNE------QADKFYDIIQEGK 249 (608)
T ss_pred ceEEHHHCCCCC-C-ceEEEEEEEeccccceecCCCCCc-eeeEEEEecCCCeEEEEECch------HHHHHhhhcccCC
Confidence 578899998643 3 48999999753 3 236 788899999999999999864 2346778899999
Q ss_pred eEEEEE-EEecCCCccCCCceeEEEEEeEEEEeecCCC
Q 008808 162 IVDVIG-VVSVPDVEIKGATQQVEVQIKKLYCVSRAAK 198 (553)
Q Consensus 162 iV~V~G-~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~ 198 (553)
++.|.+ .|....+.-+.....+||...+-..+.+|..
T Consensus 250 VY~Is~~~Vk~an~~y~~~~~~yei~f~~~T~I~~~~d 287 (608)
T TIGR00617 250 VYYISKGSLKPANKQFTNLGNDYEMTLDRDTVIEECED 287 (608)
T ss_pred EEEECceEEEEccccccCCCCCEEEEECCCeEEEECCC
Confidence 999965 5544333222333459999988777777743
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=89.52 E-value=1.2 Score=48.17 Aligned_cols=76 Identities=12% Similarity=0.221 Sum_probs=58.0
Q ss_pred CEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEE
Q 008808 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVE 184 (553)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~E 184 (553)
..|||+|-|.+.+...+.-.|+.|.|....|+|++...... +..-.+..|+-|.|.|.|..=+ ..|.+-
T Consensus 24 ~~V~v~GEISn~t~~~sgH~YFtLKD~~A~i~c~mf~~~~~------~l~f~p~eG~~V~v~G~is~Y~-----~rG~YQ 92 (440)
T COG1570 24 GQVWVRGEISNFTRPASGHLYFTLKDERAQIRCVMFKGNNR------RLKFRPEEGMQVLVRGKISLYE-----PRGDYQ 92 (440)
T ss_pred CeEEEEEEecCCccCCCccEEEEEccCCceEEEEEEcCccc------ccCCCccCCCEEEEEEEEEEEc-----CCCceE
Confidence 56999999999986665578999999999999999986321 1112488999999999987532 134677
Q ss_pred EEEeEEE
Q 008808 185 VQIKKLY 191 (553)
Q Consensus 185 i~v~~i~ 191 (553)
|.++++.
T Consensus 93 i~~~~~~ 99 (440)
T COG1570 93 IVAESME 99 (440)
T ss_pred EEEecCC
Confidence 7777654
|
|
| >cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain | Back alignment and domain information |
|---|
Probab=89.18 E-value=0.96 Score=43.75 Aligned_cols=107 Identities=21% Similarity=0.273 Sum_probs=56.0
Q ss_pred HHHHHHHHHhHhCCcEEEecceeeccC-CC----CCccceee-cCC-CCceecccC--hhhHhhhc--ccCC--CceeEE
Q 008808 253 QVGNIFRQFLLSENFVEIHTPKLIAGS-SE----GGSAVFRL-DYK-GQSACLAQS--PQLHKQMS--ICGD--FGRVFE 319 (553)
Q Consensus 253 ~i~~~iR~fl~~~gF~EV~TP~l~~~~-~e----gga~~F~v-~~~-~~~~~L~~S--Pql~lk~l--i~~g--~~rVfe 319 (553)
.+.+.+|++|...||.||-|..+++.. .. +...+.++ |-. ..--+||.| |.|..-.. +.-+ --|+||
T Consensus 4 ~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~~~~~~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~~~lFE 83 (198)
T cd00769 4 KLERKLRRLLAGLGFQEVITYSLTSPEEAELFDGGLDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNKPLRLFE 83 (198)
T ss_pred HHHHHHHHHHHHCCCceeecccCCCHHHHHhccCCCCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCEeEEE
Confidence 345678999999999999999996531 10 11112222 211 122345544 33322111 1112 249999
Q ss_pred EeceecCCCCCCCCCcCcccceeEEeccc------------cCHHHHHHHHHHHHH
Q 008808 320 TGPVFRAEDSYTHRHLCEFTGLDVEMEIK------------KHYSEVMDIVDRLFV 363 (553)
Q Consensus 320 Ig~~FR~E~~~t~rHl~EFt~lE~e~a~~------------~~~~~~m~~~e~ll~ 363 (553)
||+||..+.. +..|.+.|=.-++.. .++.|+-..++.++.
T Consensus 84 iG~vf~~~~~----~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~ 135 (198)
T cd00769 84 IGRVFLKDED----GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLR 135 (198)
T ss_pred eEeEEecCCC----CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHH
Confidence 9999976431 223444432222211 156666666666664
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain. |
| >PRK07459 single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=88.95 E-value=8.4 Score=34.42 Aligned_cols=85 Identities=12% Similarity=0.166 Sum_probs=51.8
Q ss_pred EEEEEEEEee---ec--cCCCceEEEEEE-------eCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCC
Q 008808 106 EVLIRGRVHT---TR--PVGNKLAFVVVR-------ERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 173 (553)
Q Consensus 106 ~V~v~GrV~~---~R--~~G~kl~Fl~Lr-------d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~ 173 (553)
.|.|.|||-+ +| ..|+.++=+.|- +.+.-+.|++-.+. .....+.|+.||-|.|+|.+....
T Consensus 5 ~v~LiGrL~~DPelr~t~~G~~v~~fslAv~~~~~~~~t~w~~v~~wg~~------Ae~~~~~l~KG~~V~V~G~l~~~~ 78 (121)
T PRK07459 5 SVTLVGRAGRDPEVRYFESGSVVCNLTLAVNRRSRDDEPDWFNLEIWGKT------AQVAADYVKKGSLIGITGSLKFDR 78 (121)
T ss_pred EEEEEEEccCCCEEEEcCCCCEEEEEEEEecccccCCCceEEEEEEehHH------HHHHHHHcCCCCEEEEEEEEEecc
Confidence 4666676665 23 234333333333 23456777776531 122456799999999999997653
Q ss_pred C-ccC-CCce-eEEEEEeEEEEeecC
Q 008808 174 V-EIK-GATQ-QVEVQIKKLYCVSRA 196 (553)
Q Consensus 174 ~-~~~-~~t~-~~Ei~v~~i~~ls~~ 196 (553)
- ... |.+. ..||.+.+|..|++.
T Consensus 79 ~~d~d~G~~r~~~ei~a~~i~~L~~k 104 (121)
T PRK07459 79 WTDRNTGEDRSKPVIRVDRLELLGSK 104 (121)
T ss_pred eEcCCCCeEEEEEEEEEeEEEECcCC
Confidence 2 122 3333 399999999999753
|
|
| >PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair | Back alignment and domain information |
|---|
Probab=88.40 E-value=2.7 Score=36.71 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=38.9
Q ss_pred CCCCCEEEEEEEEeeeccCCCceEEEEEE-eCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCC
Q 008808 101 SLKDQEVLIRGRVHTTRPVGNKLAFVVVR-ERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 173 (553)
Q Consensus 101 ~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lr-d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~ 173 (553)
...|+.|+|-|+|.+....| +. +.|+ -+++.|+|.+.... .+..+.+|.|.|+|....
T Consensus 15 ~~~gk~VrivGkv~~~~~~g-~~--~~l~~~d~~~V~v~l~~~~------------~~~~~~~vEviG~V~~~~ 73 (109)
T PF08661_consen 15 QFVGKTVRIVGKVESVDPDG-GS--ATLSTSDGGQVTVSLNPPS------------DEELSKYVEVIGKVNDDG 73 (109)
T ss_dssp GGTTSEEEEEEEEEEE-TTS-SE--EEEE-TTS-EEEEEESS--------------SS---SEEEEEEEE-TTS
T ss_pred hhCCCeEEEEEEEeeEcCCC-CE--EEEEcCCCCEEEEEeCCCC------------CCCCCCEEEEEEEEcCCC
Confidence 58999999999999999777 42 3555 35568888877542 344588999999997543
|
; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D. |
| >KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.39 E-value=0.25 Score=51.94 Aligned_cols=56 Identities=16% Similarity=0.256 Sum_probs=38.9
Q ss_pred CCCceecccChhhHhhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccc
Q 008808 292 KGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK 348 (553)
Q Consensus 292 ~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~ 348 (553)
-+....||.---.|---++.+|.+.---.|-|||-..+ +.+|-|=|.++|--.-+.
T Consensus 129 ~n~~~~lr~htsahq~e~~~~~~~~flv~~DVyrrdei-dsthypvfhq~eg~~~~s 184 (436)
T KOG2783|consen 129 VNHTHCLRAHTSAHQHELFQKGLDGFLVTGDVYRRDEI-DSTHYPVFHQMEGVRLWS 184 (436)
T ss_pred ecceeeehhcchhhHHHHHHhcccccceeeeeeeeccc-cccccceeccccceeEEe
Confidence 44555665333333333455667778889999999887 889999999998755443
|
|
| >COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.58 E-value=2.5 Score=40.55 Aligned_cols=66 Identities=21% Similarity=0.370 Sum_probs=50.5
Q ss_pred CCCCEEEEEEEEeeec-cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHH---hcCCCCceEEEEEEEec
Q 008808 102 LKDQEVLIRGRVHTTR-PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV---RSLSNESIVDVIGVVSV 171 (553)
Q Consensus 102 ~~g~~V~v~GrV~~~R-~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~---~~l~~esiV~V~G~v~~ 171 (553)
...+.|.|-|-|.+.+ ..|..+.|+.|.|++++|-++++.+. .+..... .-+..|++|.|+|.+..
T Consensus 49 ~l~e~v~vkg~V~~~~n~~~~gi~~l~lndgtGti~vva~~~t----ee~l~~n~~~p~~~eGe~veVtGrv~~ 118 (204)
T COG4085 49 RLNEEVTVKGEVTADQNAIGGGIESLVLNDGTGTITVVASRST----EETLELNEGMPVTVEGEIVEVTGRVEE 118 (204)
T ss_pred eeeccceeeeEEEeeecccccceEEEEEECCCCcEEEEEecCh----hHhHhhcCCCCccccCcEEEEEEEEEE
Confidence 4456788999999998 55668999999999999999998763 2222211 13678999999999864
|
|
| >cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG | Back alignment and domain information |
|---|
Probab=87.12 E-value=7.5 Score=30.26 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=40.0
Q ss_pred EEEEEeeec--cC-CCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 109 IRGRVHTTR--PV-GNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 109 v~GrV~~~R--~~-G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
+.|+|.+++ .. |++..-+.+.|+++.|.++..... . -....++.|+.+.|.|.+..-
T Consensus 2 i~~~V~~~~~~~~~~~~~~~~~~~D~~g~i~~~~F~~~----~---~~~~~~~~G~~~~v~Gkv~~~ 61 (75)
T cd04488 2 VEGTVVSVEVVPRRGRRRLKVTLSDGTGTLTLVFFNFQ----P---YLKKQLPPGTRVRVSGKVKRF 61 (75)
T ss_pred EEEEEEEEEeccCCCccEEEEEEEcCCCEEEEEEECCC----H---HHHhcCCCCCEEEEEEEEeec
Confidence 566665542 11 346677888999999999987521 1 113569999999999999753
|
RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha |
| >PRK15491 replication factor A; Provisional | Back alignment and domain information |
|---|
Probab=87.00 E-value=3.8 Score=43.86 Aligned_cols=93 Identities=14% Similarity=0.178 Sum_probs=65.1
Q ss_pred eEEeccccCCCCCCEEEEEEEEeee-------ccCC--CceEEEEEEeCCeEEEEEeecCCCCcchHHHHHH-hcCCCCc
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTT-------RPVG--NKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNES 161 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~-------R~~G--~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~-~~l~~es 161 (553)
..+|++|.+. ...|+|.|||.++ |..| .++.=++|-|.+++|++++-.+. . -.+. ..|..|+
T Consensus 57 ~~kI~dL~~~--~~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~DeTG~ir~tlW~~~--a----~~~~~~~le~G~ 128 (374)
T PRK15491 57 TTKIADINES--SSNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVADETGSIRLTLWDDL--A----DLIKTGDIEVGK 128 (374)
T ss_pred cccHHHCCCC--CCceEEEEEEeeccCCeeeecCCCCceEEEEEEEEcCCCeEEEEEECch--h----hhhccCCcCCCC
Confidence 4567777542 3678999999987 3334 27777899999999999998642 1 1122 3599999
Q ss_pred eEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC
Q 008808 162 IVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT 199 (553)
Q Consensus 162 iV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~ 199 (553)
++.|.|.+...- . .+||++.+...+.+|...
T Consensus 129 v~~I~~~~~~~y------~-g~Ei~i~~~~~i~~~~~~ 159 (374)
T PRK15491 129 SLNISGYAKEGY------S-GIEVNIGRYGGISESDEN 159 (374)
T ss_pred EEEEeeeeccCc------c-cEEEEeCCCceeeecccc
Confidence 999998743221 1 279999887778877543
|
|
| >PRK08486 single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=86.97 E-value=10 Score=36.49 Aligned_cols=59 Identities=12% Similarity=0.074 Sum_probs=39.5
Q ss_pred CeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC-ccCCCcee-EEEEEeEEEEeecC
Q 008808 132 VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGATQQ-VEVQIKKLYCVSRA 196 (553)
Q Consensus 132 ~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~-~~~~~t~~-~Ei~v~~i~~ls~~ 196 (553)
+.-|-|++-.+ ....+...|++||-|.|+|.+....- ...|.+.. +||.+.+|.+|++.
T Consensus 48 t~fi~v~~fg~------~AE~~~~~l~KG~~V~VeGrL~~~~y~dkdG~~r~~~eI~a~~v~~L~~~ 108 (182)
T PRK08486 48 VCFIDIRLFGR------TAEIANQYLSKGSKVLIEGRLTFESWMDQNGQKRSKHTITAESMQMLDSK 108 (182)
T ss_pred ceEEEEEEEhH------HHHHHHHHcCCCCEEEEEEEEEeCcEECCCCcEEEEEEEEEeEEEECCCC
Confidence 34566666543 11224567999999999999975432 22344444 99999999999764
|
|
| >COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.19 E-value=1.6 Score=46.79 Aligned_cols=97 Identities=22% Similarity=0.342 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCCc----cceee-cCCCCceecc--cChhhHhhh--cccCCCc
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGS----AVFRL-DYKGQSACLA--QSPQLHKQM--SICGDFG 315 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egga----~~F~v-~~~~~~~~L~--~SPql~lk~--li~~g~~ 315 (553)
.+....|.+.++..|...||..|+||+|.... ...|+ ..|++ +..|..+.|| ..+++...- .+.+...
T Consensus 17 ~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~~g~~l~LRpD~T~pVaR~~~~~~~~~P~ 96 (390)
T COG3705 17 ARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDETGGRLGLRPDFTIPVARIHATLLAGTPL 96 (390)
T ss_pred HhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEecCCCCeEEecccccHHHHHHHHHhcCCCCc
Confidence 35567788888999999999999999997542 12122 37876 4567778888 333332210 1234688
Q ss_pred eeEEEeceecCCCCCCCCCcCcccceeEEe
Q 008808 316 RVFETGPVFRAEDSYTHRHLCEFTGLDVEM 345 (553)
Q Consensus 316 rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~ 345 (553)
|++..|+|||+... -+.-..||+|.=+|+
T Consensus 97 Rl~Y~G~Vfr~~~~-~~g~~~Ef~QaGiEl 125 (390)
T COG3705 97 RLSYAGKVFRAREG-RHGRRAEFLQAGIEL 125 (390)
T ss_pred eeeecchhhhcchh-ccCcccchhhhhhHH
Confidence 99999999999832 333446999988875
|
|
| >PRK06863 single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=86.10 E-value=15 Score=34.93 Aligned_cols=57 Identities=16% Similarity=0.035 Sum_probs=39.6
Q ss_pred EEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC-ccCCCcee-EEEEEeEEEEeecC
Q 008808 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGATQQ-VEVQIKKLYCVSRA 196 (553)
Q Consensus 134 ~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~-~~~~~t~~-~Ei~v~~i~~ls~~ 196 (553)
-+.|++..+ ....+...|++||-|.|+|.+....- ...|.+.. +||.+.+|.+|+.-
T Consensus 53 w~~Vv~fgk------~AE~v~~~LkKGs~V~VeGrL~~r~w~DkdG~~r~~~eI~a~~i~~L~~r 111 (168)
T PRK06863 53 WHRIVFYRR------QAEVAGEYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQGDVLQMLGGR 111 (168)
T ss_pred EEEEEEEhH------HHHHHHHHCCCCCEEEEEEEEEeCCccCCCCCEEEEEEEEEeEEEECCCC
Confidence 567766543 22335677999999999999976532 22344433 99999999998753
|
|
| >PRK07275 single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=85.71 E-value=14 Score=34.92 Aligned_cols=85 Identities=14% Similarity=0.265 Sum_probs=53.4
Q ss_pred EEEEEEEEee---ec--cCCCceEEEEEE------e-----CCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEE
Q 008808 106 EVLIRGRVHT---TR--PVGNKLAFVVVR------E-----RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVV 169 (553)
Q Consensus 106 ~V~v~GrV~~---~R--~~G~kl~Fl~Lr------d-----~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v 169 (553)
.|.|.|||.. +| ..|..++-+.|- + ...-|.|++-.+ .....++.|++||-|.|+|.+
T Consensus 4 ~v~LiGrL~~DPElr~t~sG~~v~~ftlAv~r~~~~~~ge~~tdfi~vv~wgk------~Ae~~~~~l~KG~~V~VeGrl 77 (162)
T PRK07275 4 NVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINCVIWRQ------QAENLANWAKKGALIGVTGRI 77 (162)
T ss_pred EEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecCCCCEeeeEEEEEEEcH------HHHHHHHHcCCCCEEEEEEEE
Confidence 4667777764 34 245445555552 1 134677777654 122345679999999999999
Q ss_pred ecCCC-ccCCCcee-EEEEEeEEEEeecC
Q 008808 170 SVPDV-EIKGATQQ-VEVQIKKLYCVSRA 196 (553)
Q Consensus 170 ~~~~~-~~~~~t~~-~Ei~v~~i~~ls~~ 196 (553)
....- ...|.+.. .||.+.+|.+|.+.
T Consensus 78 ~~r~y~dkdG~k~~~~evva~~i~~l~~~ 106 (162)
T PRK07275 78 QTRNYENQQGQRVYVTEVVADNFQMLESR 106 (162)
T ss_pred EeceEECCCCCEEEEEEEEEeEEEECCCC
Confidence 75432 22344444 99999999998754
|
|
| >TIGR00237 xseA exodeoxyribonuclease VII, large subunit | Back alignment and domain information |
|---|
Probab=85.60 E-value=3.5 Score=45.08 Aligned_cols=76 Identities=16% Similarity=0.188 Sum_probs=58.2
Q ss_pred EEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEE
Q 008808 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEV 185 (553)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei 185 (553)
.|||.|=|.+.+...+.=+|+.|.|....|.||+..+... ...-.+..|+-|.|.|.|..-+ ..|.+.|
T Consensus 19 ~v~V~GEisn~~~~~sGH~YFtLkD~~a~i~~vmf~~~~~------~l~f~~~~G~~V~v~g~v~~y~-----~~G~~ql 87 (432)
T TIGR00237 19 QVWIQGEISNFTQPVSGHWYFTLKDENAQVRCVMFRGNNN------RLKFRPQNGQQVLVRGGISVYE-----PRGDYQI 87 (432)
T ss_pred cEEEEEEecCCeeCCCceEEEEEEcCCcEEEEEEEcChhh------CCCCCCCCCCEEEEEEEEEEEC-----CCCcEEE
Confidence 7999999999976544568999999999999999876310 0112478999999999987533 2356889
Q ss_pred EEeEEEE
Q 008808 186 QIKKLYC 192 (553)
Q Consensus 186 ~v~~i~~ 192 (553)
.|.++..
T Consensus 88 ~v~~i~~ 94 (432)
T TIGR00237 88 ICFEMQP 94 (432)
T ss_pred EEEEecc
Confidence 9988864
|
This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits. |
| >PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids | Back alignment and domain information |
|---|
Probab=85.58 E-value=11 Score=31.81 Aligned_cols=54 Identities=19% Similarity=0.147 Sum_probs=32.2
Q ss_pred EEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCc-cCCCce-eEEEEEeEEEEe
Q 008808 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-IKGATQ-QVEVQIKKLYCV 193 (553)
Q Consensus 134 ~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~-~~~~t~-~~Ei~v~~i~~l 193 (553)
.++|++-.+ ........+..||.|.|+|.+....-. ..|.+. .++|.+++|.+|
T Consensus 49 ~~~v~~~g~------~A~~~~~~l~kG~~V~V~G~l~~~~~~~~~G~~~~~~~i~a~~i~fl 104 (104)
T PF00436_consen 49 WINVVAWGK------LAENVAEYLKKGDRVYVEGRLRTRTYEDKDGQKRYRVEIIADNIEFL 104 (104)
T ss_dssp EEEEEEEHH------HHHHHHHH--TT-EEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEE-
T ss_pred EEEEEeeee------cccccceEEcCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEeC
Confidence 567766643 122345669999999999998754321 124443 399999999875
|
It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C .... |
| >PRK06751 single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=85.34 E-value=17 Score=34.64 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=40.3
Q ss_pred eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC-ccCCCcee-EEEEEeEEEEeecC
Q 008808 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGATQQ-VEVQIKKLYCVSRA 196 (553)
Q Consensus 133 ~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~-~~~~~t~~-~Ei~v~~i~~ls~~ 196 (553)
.-+-|++-.+ ....+...|++|+.|.|+|.+....- ...+.+.. +||.+..|.+|.+.
T Consensus 47 dwi~~v~wgk------~Ae~~~~~l~KG~~V~VeGrL~~r~yedkdG~~~~~~eVva~~i~~l~~r 106 (173)
T PRK06751 47 DFINCVIWRK------QAENVANYLKKGSLAGVDGRLQTRNYEGQDGKRVYVTEVLAESVQFLEPR 106 (173)
T ss_pred EEEEEEEeCc------HHHHHHHHcCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEeCcCC
Confidence 3566766643 22335667999999999999986542 22354444 99999999998753
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=85.09 E-value=3.8 Score=47.48 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=51.1
Q ss_pred ccCCCCCCEEEEEEEEeeeccC--CCceEEEEEEeCCeEEEEEeecCCCCcchHHHHH-HhcCCCCceEEEEEEEec
Q 008808 98 LNGSLKDQEVLIRGRVHTTRPV--GNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRF-VRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 98 l~~~~~g~~V~v~GrV~~~R~~--G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~-~~~l~~esiV~V~G~v~~ 171 (553)
+.+...|+.|+|.|+|.+.+.. ++++.-+.+.|+++.++++....+ . .| .+.++.|+.+.|.|+|..
T Consensus 53 i~~l~~g~~vtv~g~V~~~~~~~~~~~~~~v~l~D~tg~i~l~~F~~n----~---~~~~~~l~~G~~~~v~Gkv~~ 122 (681)
T PRK10917 53 IAELRPGEKVTVEGEVLSAEVVFGKRRRLTVTVSDGTGNLTLRFFNFN----Q---PYLKKQLKVGKRVAVYGKVKR 122 (681)
T ss_pred HHHCCCCCEEEEEEEEEEEEEccCCceEEEEEEEECCeEEEEEEEccC----c---HHHHhhCCCCCEEEEEEEEEe
Confidence 3444679999999999886432 446777889999999999988411 0 24 357999999999999975
|
|
| >PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [] | Back alignment and domain information |
|---|
Probab=85.00 E-value=3.2 Score=37.73 Aligned_cols=67 Identities=18% Similarity=0.191 Sum_probs=38.1
Q ss_pred CCCCCCEEEEEEEEeeeccCCCceEEEEEEeCC--eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 100 GSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERV--STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 100 ~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~--~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
....|+.|.|.|.|..++....+-.++.+.++. ..|+|.+..+.. . ......|+.|+.|.|+|++.-
T Consensus 63 ~kY~gK~i~vtG~V~~I~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~--~~~~~~l~~G~~Vti~G~~~g 131 (144)
T PF12869_consen 63 KKYKGKIIEVTGTVSSIDKGFGDNYVVLLGTENGFAGVQCYFSNDQE---K--RASVAKLKKGQKVTIKGICTG 131 (144)
T ss_dssp HHHTT-EEEEEEEEEEEEE-STT-EEEEEE-TT-S-S--EEEEEEGG---G--HHHHHH--TTSEEEEEEE---
T ss_pred hhcCCCEEEEEEEEEEEEEcCCCcEEEEccCCCCceeEEEEEccchh---h--hhhHhcCCCCCEEEEEEEEEe
Confidence 356799999999999997633244555555533 468888876521 1 112345999999999998753
|
; PDB: 3F1Z_I. |
| >PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=84.96 E-value=4.2 Score=44.39 Aligned_cols=79 Identities=13% Similarity=0.204 Sum_probs=60.3
Q ss_pred CCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeE
Q 008808 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQV 183 (553)
Q Consensus 104 g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~ 183 (553)
-..|||.|=|.+.+.+++.=+|+.|.|....|-||+-..... +..-.+..|+-|.|.|.|..-+ ..|.+
T Consensus 23 ~~~v~v~gEis~~~~~~sGH~Yf~Lkd~~a~i~~~~~~~~~~------~~~~~~~~G~~v~v~g~~~~y~-----~~g~~ 91 (438)
T PRK00286 23 LGQVWVRGEISNFTRHSSGHWYFTLKDEIAQIRCVMFKGSAR------RLKFKPEEGMKVLVRGKVSLYE-----PRGDY 91 (438)
T ss_pred CCcEEEEEEeCCCeeCCCCeEEEEEEcCCcEEEEEEEcChhh------cCCCCCCCCCEEEEEEEEEEEC-----CCCCE
Confidence 467999999999876644568999999999999999986310 1112488999999999997532 13568
Q ss_pred EEEEeEEEEe
Q 008808 184 EVQIKKLYCV 193 (553)
Q Consensus 184 Ei~v~~i~~l 193 (553)
.|.|.+|...
T Consensus 92 ql~v~~i~~~ 101 (438)
T PRK00286 92 QLIVEEIEPA 101 (438)
T ss_pred EEEEEEeeeC
Confidence 9999888753
|
|
| >PRK02801 primosomal replication protein N; Provisional | Back alignment and domain information |
|---|
Probab=83.47 E-value=24 Score=30.36 Aligned_cols=52 Identities=12% Similarity=0.230 Sum_probs=33.8
Q ss_pred EEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEe
Q 008808 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCV 193 (553)
Q Consensus 134 ~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~l 193 (553)
.|+|++-.+ ......+.++.||-|.|+|.+..- +...|. ..+.|++..++.+
T Consensus 49 ~i~~va~G~------~Ae~~~~~l~kGs~v~V~G~L~~~-~~~~g~-~~~~v~~~~i~~l 100 (101)
T PRK02801 49 RMPVIVSGN------QFQAITQSITVGSKITVQGFISCH-QGRNGL-SKLVLHAEQIELI 100 (101)
T ss_pred EEEEEEEcH------HHHHHHhhcCCCCEEEEEEEEEEe-ECCCCC-EEEEEEEEEEEEC
Confidence 388877653 222344579999999999999861 222221 2355888888765
|
|
| >PRK06752 single-stranded DNA-binding protein; Validated | Back alignment and domain information |
|---|
Probab=83.38 E-value=29 Score=30.31 Aligned_cols=58 Identities=17% Similarity=0.278 Sum_probs=39.3
Q ss_pred eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC-ccCCCce-eEEEEEeEEEEeecC
Q 008808 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGATQ-QVEVQIKKLYCVSRA 196 (553)
Q Consensus 133 ~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~-~~~~~t~-~~Ei~v~~i~~ls~~ 196 (553)
.-+.|++-.+ ....+.+.+..||-|.|+|.+....- ...|.+. .+||.+.+|.+|++.
T Consensus 47 ~~~~v~~wg~------~Ae~~~~~l~KG~~V~V~G~l~~~~~~~~~G~~~~~~ei~a~~i~~l~~~ 106 (112)
T PRK06752 47 DFINCVVWRK------SAENVTEYCTKGSLVGITGRIHTRNYEDDQGKRIYITEVVIESITFLERR 106 (112)
T ss_pred EEEEEEEehH------HHHHHHHhcCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEECCCC
Confidence 3456665543 12234567999999999999986532 2234444 399999999998754
|
|
| >PRK12366 replication factor A; Reviewed | Back alignment and domain information |
|---|
Probab=83.26 E-value=6 Score=45.42 Aligned_cols=93 Identities=10% Similarity=0.069 Sum_probs=63.4
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeec---------cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCce
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTR---------PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESI 162 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R---------~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esi 162 (553)
...|++|++-..|..++|+|||.++- ..| ++.=+.|.|+++.|++++-... . .+| ..|..|++
T Consensus 279 ~~pI~~L~~~~~g~~~~I~grV~~~~~~R~f~~~~g~g-kv~s~~l~D~tG~IR~t~w~~~--~----d~~-~~l~~G~v 350 (637)
T PRK12366 279 IVNIEELTEFEDGEEVDVKGRIIAISDKREVERDDRTA-EVQDIELADGTGRVRVSFWGEK--A----KIL-ENLKEGDA 350 (637)
T ss_pred ceeHHHCCcccCCCEEEEEEEEEecCCceEEEcCCCcE-EEEEEEEEcCCCeEEEEEeCch--h----hhh-cccCCCCE
Confidence 45667776533688999999999872 246 8888999999999999998652 1 123 34689999
Q ss_pred EEEEEEEecCCCccCCCceeEEEEEeEEEEe
Q 008808 163 VDVIGVVSVPDVEIKGATQQVEVQIKKLYCV 193 (553)
Q Consensus 163 V~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~l 193 (553)
+.|.+-..+.-... ....++||.+..-..+
T Consensus 351 y~is~~~vk~y~~~-~~~~~~El~~~~~s~I 380 (637)
T PRK12366 351 VKIENCKVRTYYDN-EGEKRVDLNAGYSSEI 380 (637)
T ss_pred EEEecCEEeecccc-CCCcCEEEEcCCceEE
Confidence 99998655421111 1124588888554433
|
|
| >PRK06293 single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=82.72 E-value=26 Score=33.01 Aligned_cols=59 Identities=17% Similarity=0.141 Sum_probs=39.7
Q ss_pred CeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC-ccCCCcee-EEEEEeEEEEeecC
Q 008808 132 VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGATQQ-VEVQIKKLYCVSRA 196 (553)
Q Consensus 132 ~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~-~~~~~t~~-~Ei~v~~i~~ls~~ 196 (553)
+.-+.|++-.+ ......+.|++||.|.|+|.+....- ...|.+.. +||.+.+|.+|+-.
T Consensus 42 T~wi~v~awg~------~Ae~v~~yL~KG~~V~VeGrL~~~~y~dkdG~kr~~~eIva~~I~fl~~~ 102 (161)
T PRK06293 42 TVWCRCNIWGN------RYDKMLPYLKKGSGVIVAGEMSPESYVDKDGSPQSSLVVSVDTIKFSPFG 102 (161)
T ss_pred eEEEEEEEEhH------HHHHHHHhCCCCCEEEEEEEEEeCccCCCCCCEEEEEEEEEeEEEECcCC
Confidence 34566666543 11223566999999999999975432 23354444 99999999999654
|
|
| >KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=82.50 E-value=3.1 Score=44.68 Aligned_cols=116 Identities=12% Similarity=0.162 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----C----CCCccceeecCCCCceecccChhhHhhhc-----cc-
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----S----EGGSAVFRLDYKGQSACLAQSPQLHKQMS-----IC- 311 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~----egga~~F~v~~~~~~~~L~~SPql~lk~l-----i~- 311 (553)
+...+-.+++++--+|+..+||+=+.||.|.... | .+.-..+.+---+.+.||.-..|.-+--+ +.
T Consensus 183 ~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~cg~~~~~d~~~~y~ld~~~~~~LiaTaE~plAa~~~~e~~~~ 262 (455)
T KOG2509|consen 183 AGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQKCGQLPRFDEEQYYVLDGGDEKYLIATAEQPLAAYHRDEWLEE 262 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHHhccCcCCCcceEEeecCCccceeEeeccchhhhhhccccccc
Confidence 4556778899999999999999999999886421 1 11111222211122344432222221100 00
Q ss_pred CC-CceeEEEeceecCCC-C--CCCC---CcCcccceeEEeccccCHHHHHHHHHHHHH
Q 008808 312 GD-FGRVFETGPVFRAED-S--YTHR---HLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 312 ~g-~~rVfeIg~~FR~E~-~--~t~r---Hl~EFt~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
.. --|+--.++|||.|- + .+.+ -..+|+-+|.-. +. +-++--++.|+|+.
T Consensus 263 ~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fv-it-~Pe~S~~~~eEmi~ 319 (455)
T KOG2509|consen 263 DQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFV-IT-GPEDSWEMLEEMIN 319 (455)
T ss_pred ccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEE-ec-CcchhHHHHHHHHH
Confidence 01 135556789999995 2 1222 234899999743 22 34454555555554
|
|
| >PRK13480 3'-5' exoribonuclease YhaM; Provisional | Back alignment and domain information |
|---|
Probab=81.98 E-value=13 Score=38.95 Aligned_cols=80 Identities=9% Similarity=0.096 Sum_probs=55.6
Q ss_pred CCCEEEEEEEEeeec----cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCC
Q 008808 103 KDQEVLIRGRVHTTR----PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKG 178 (553)
Q Consensus 103 ~g~~V~v~GrV~~~R----~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~ 178 (553)
.|+.|..-.-|.++. ..|+.-..+.|.|.++.|.+.+=... . .....+..|++|.|.|.+..-.
T Consensus 10 ~g~~v~~~~lv~~~~~~~~knG~~yl~l~l~D~tG~I~ak~W~~~----~---~~~~~~~~g~vv~v~G~v~~y~----- 77 (314)
T PRK13480 10 VGEQVDHFLLIKSATKGVASNGKPFLTLILQDKSGDIEAKLWDVS----P---EDEATYVPETIVHVKGDIINYR----- 77 (314)
T ss_pred CCCEeeEEEEEEEceeeecCCCCeEEEEEEEcCCcEEEEEeCCCC----h---hhHhhcCCCCEEEEEEEEEEEC-----
Confidence 355555555555442 34656777889999999999985432 1 2246799999999999987432
Q ss_pred CceeEEEEEeEEEEeecC
Q 008808 179 ATQQVEVQIKKLYCVSRA 196 (553)
Q Consensus 179 ~t~~~Ei~v~~i~~ls~~ 196 (553)
+.+.|.+.++..+.+.
T Consensus 78 --g~~Ql~i~~i~~~~~~ 93 (314)
T PRK13480 78 --GRKQLKVNQIRLATEE 93 (314)
T ss_pred --CcceEEEEEeEECCCC
Confidence 2467888888887664
|
|
| >PRK07274 single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=81.18 E-value=32 Score=31.09 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=32.8
Q ss_pred HHhcCCCCceEEEEEEEecCCCccCCCcee-EEEEEeEEEEeec
Q 008808 153 FVRSLSNESIVDVIGVVSVPDVEIKGATQQ-VEVQIKKLYCVSR 195 (553)
Q Consensus 153 ~~~~l~~esiV~V~G~v~~~~~~~~~~t~~-~Ei~v~~i~~ls~ 195 (553)
..+.|++||.|.|+|.+....-...|.+.. +||.+.++.+|..
T Consensus 61 v~~~l~KG~~V~V~Grl~~~~y~kdG~~~~~~eviv~~i~~l~~ 104 (131)
T PRK07274 61 LASYASKGSLISIDGELRTRKYEKDGQTHYVTEVLCQSFQLLES 104 (131)
T ss_pred HHHHcCCCCEEEEEEEEEeccCccCCcEEEEEEEEEEEEEECcC
Confidence 456799999999999987654433344443 8999999998864
|
|
| >PRK07211 replication factor A; Reviewed | Back alignment and domain information |
|---|
Probab=80.66 E-value=13 Score=41.23 Aligned_cols=82 Identities=16% Similarity=0.162 Sum_probs=57.7
Q ss_pred EEeccccCCCCCCEEEEEEEEeeecc-----------CCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCc
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRP-----------VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNES 161 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~-----------~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~es 161 (553)
.+|.+|.+. ...|+|.|||.++-. .| |++=++|-|.++.|.+++-.. +..++...|..|+
T Consensus 54 ~~I~dL~pg--~~~vtI~aRV~~~~~~Rt~~~~~~~~eG-kv~~v~l~DeTG~Ir~TlW~d------~ad~~~~~Le~Gd 124 (485)
T PRK07211 54 NGIADIEPG--MDEVKFLAKVLSIGDLRTFERDGEDEDG-RVINVEVADETGSVRVAFWDE------QAVAAEEELEVGQ 124 (485)
T ss_pred ccHhhCCCC--CCceEEEEEEeEccCceEEEeCCCCCCc-EEEEEEEEcCCCeEEEEEech------HhHhhhcccCCCC
Confidence 356666531 255888888877622 35 899999999999999999764 2234567899999
Q ss_pred eEEEEEEEecCCCccCCCceeEEEEEeEE
Q 008808 162 IVDVIGVVSVPDVEIKGATQQVEVQIKKL 190 (553)
Q Consensus 162 iV~V~G~v~~~~~~~~~~t~~~Ei~v~~i 190 (553)
++.|.|.++.- -..+||.+.++
T Consensus 125 V~~I~~~~~~~-------ys~~El~i~~v 146 (485)
T PRK07211 125 VLRIKGRPKDG-------YNGLEVSVDKV 146 (485)
T ss_pred EEEEeceEecc-------ccceEEEEeeE
Confidence 99999876421 11368888754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 553 | ||||
| 1asy_A | 490 | Class Ii Aminoacyl Transfer Rna Synthetases: Crysta | 1e-127 | ||
| 1eov_A | 487 | Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.1 | 1e-127 | ||
| 3i7f_A | 548 | Aspartyl Trna Synthetase From Entamoeba Histolytica | 1e-119 | ||
| 3nel_A | 438 | Aspartyl-Trna Synthetase Complexed With Aspartic Ac | 4e-67 | ||
| 1b8a_A | 438 | Aspartyl-trna Synthetase Length = 438 | 9e-67 | ||
| 1n9w_A | 422 | Crystal Structure Of The Non-Discriminating And Arc | 7e-64 | ||
| 1wyd_A | 429 | Crystal Structure Of Aspartyl-Trna Synthetase From | 3e-60 | ||
| 1x54_A | 434 | Crystal Structure Of Asparaginyl-trna Synthetase Fr | 7e-41 | ||
| 3m4p_A | 456 | Entamoeba Histolytica Asparaginyl-Trna Synthetase ( | 5e-36 | ||
| 2xgt_A | 435 | Asparaginyl-Trna Synthetase From Brugia Malayi Comp | 4e-31 | ||
| 2xti_A | 437 | Asparaginyl-Trna Synthetase From Brugia Malayi Comp | 6e-31 | ||
| 1bbu_A | 504 | Lysyl-Trna Synthetase (Lyss) Complexed With Lysine | 6e-21 | ||
| 1lyl_A | 504 | Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexe | 8e-21 | ||
| 4ex5_A | 529 | Crystal Structure Of Lysyl-Trna Synthetase Lysrs Fr | 1e-17 | ||
| 3e9h_A | 493 | Lysyl-Trna Synthetase From Bacillus Stearothermophi | 4e-16 | ||
| 1efw_A | 580 | Crystal Structure Of Aspartyl-Trna Synthetase From | 2e-13 | ||
| 1efw_A | 580 | Crystal Structure Of Aspartyl-Trna Synthetase From | 4e-09 | ||
| 4dpg_A | 513 | Crystal Structure Of Human Lysrs: P38/aimp2 Complex | 3e-12 | ||
| 3bju_A | 521 | Crystal Structure Of Tetrameric Form Of Human Lysyl | 3e-12 | ||
| 1c0a_A | 585 | Crystal Structure Of The E. Coli Aspartyl-Trna Synt | 6e-12 | ||
| 1c0a_A | 585 | Crystal Structure Of The E. Coli Aspartyl-Trna Synt | 4e-09 | ||
| 1eqr_A | 590 | Crystal Structure Of Free Aspartyl-Trna Synthetase | 6e-12 | ||
| 1eqr_A | 590 | Crystal Structure Of Free Aspartyl-Trna Synthetase | 4e-09 | ||
| 4ah6_A | 617 | Human Mitochondrial Aspartyl-Trna Synthetase Length | 4e-10 | ||
| 4ah6_A | 617 | Human Mitochondrial Aspartyl-Trna Synthetase Length | 2e-09 | ||
| 1nnh_A | 294 | Hypothetical Protein From Pyrococcus Furiosus Pfu-1 | 1e-09 | ||
| 3p8t_A | 294 | Crystal Structure Of The Archaeal Asparagine Synthe | 4e-08 | ||
| 3g1z_A | 326 | Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthe | 2e-05 | ||
| 3a5y_A | 345 | Crystal Structure Of Genx From Escherichia Coli In | 2e-04 | ||
| 3a5z_A | 328 | Crystal Structure Of Escherichia Coli Genx In Compl | 2e-04 |
| >pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal Structure Of Yeast Aspartyl-Trna Synthetase Complexed With Trna Asp Length = 490 | Back alignment and structure |
|
| >pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From Yeast Length = 487 | Back alignment and structure |
|
| >pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica Length = 548 | Back alignment and structure |
|
| >pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid Length = 438 | Back alignment and structure |
|
| >pdb|1B8A|A Chain A, Aspartyl-trna Synthetase Length = 438 | Back alignment and structure |
|
| >pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal- Type Aspartyl-Trna Synthetase From Thermus Thermophilus Length = 422 | Back alignment and structure |
|
| >pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Sulfolobus Tokodaii Length = 429 | Back alignment and structure |
|
| >pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From Pyrococcus Horikoshii Complexed With Asparaginyl-adenylate Length = 434 | Back alignment and structure |
|
| >pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs) In Complex With Asparaginyl-Adenylate Length = 456 | Back alignment and structure |
|
| >pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With The Sulphamoyl Analogue Of Asparaginyl-Adenylate Length = 435 | Back alignment and structure |
|
| >pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg Length = 437 | Back alignment and structure |
|
| >pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine Length = 504 | Back alignment and structure |
|
| >pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With Lysine Length = 504 | Back alignment and structure |
|
| >pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From Burkholderia Thailandensis Bound To Lysine Length = 529 | Back alignment and structure |
|
| >pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus Complexed With L-Lysylsulfamoyl Adenosine Length = 493 | Back alignment and structure |
|
| >pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus Thermophilus Complexed To Trnaasp From Escherichia Coli Length = 580 | Back alignment and structure |
|
| >pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus Thermophilus Complexed To Trnaasp From Escherichia Coli Length = 580 | Back alignment and structure |
|
| >pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I Length = 513 | Back alignment and structure |
|
| >pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna Synthetase Length = 521 | Back alignment and structure |
|
| >pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase : Trnaasp : Aspartyl-Adenylate Complex Length = 585 | Back alignment and structure |
|
| >pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase : Trnaasp : Aspartyl-Adenylate Complex Length = 585 | Back alignment and structure |
|
| >pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From Escherichia Coli Length = 590 | Back alignment and structure |
|
| >pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From Escherichia Coli Length = 590 | Back alignment and structure |
|
| >pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase Length = 617 | Back alignment and structure |
|
| >pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase Length = 617 | Back alignment and structure |
|
| >pdb|1NNH|A Chain A, Hypothetical Protein From Pyrococcus Furiosus Pfu-1801964 Length = 294 | Back alignment and structure |
|
| >pdb|3P8T|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A Length = 294 | Back alignment and structure |
|
| >pdb|3G1Z|A Chain A, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase From Salmonella Typhimurium Length = 326 | Back alignment and structure |
|
| >pdb|3A5Y|A Chain A, Crystal Structure Of Genx From Escherichia Coli In Complex With Lysyladenylate Analog Length = 345 | Back alignment and structure |
|
| >pdb|3A5Z|A Chain A, Crystal Structure Of Escherichia Coli Genx In Complex With Elongation Factor P Length = 328 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Length = 487 | Back alignment and structure |
|---|
Score = 626 bits (1616), Expect = 0.0
Identities = 246/501 (49%), Positives = 322/501 (64%), Gaps = 23/501 (4%)
Query: 61 ANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGALN-GSLKDQEVLIRGRVHTTRPV 119
+NYG +PL + + + G++ L+ D+EVL R RVH TR
Sbjct: 2 KDNYGKLPLIQSRDSDRT----------GQKRVKFVDLDEAKDSDKEVLFRARVHNTRQQ 51
Query: 120 GNKLAFVVVRERVSTVQCLATVK-PDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKG 178
G LAF+ +R++ S +Q L ++SK MV++ SL+ ESIV V G+V D IK
Sbjct: 52 GATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKS 111
Query: 179 ATQQ-VEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRV 236
AT Q +E+ I K+Y +S + PI +EDASRSEAE E A P VN DTRL+ RV
Sbjct: 112 ATVQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGL-----PVVNLDTRLDYRV 166
Query: 237 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSA 296
ID+RT+ NQ IFRIQ+ V +FR++L ++ F E+HTPKL+ SEGGS+VF + Y A
Sbjct: 167 IDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKA 226
Query: 297 CLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMD 356
LAQSPQ +KQ I DF RV+E GPVFRAE+S THRH+ EFTGLD+EM ++HY EV+D
Sbjct: 227 YLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLD 286
Query: 357 IVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKY--KPKTLRLTFEEGVQMLKDAGVEI 414
+ LFV IF L E+E V KQYP E K K +RLT++EG++ML+ AG EI
Sbjct: 287 TLSELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEI 346
Query: 415 DPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRG 474
DL+TE+E+ LG+LV +KY T+FYIL ++PL +RPFYTMP N YSNS+D F+RG
Sbjct: 347 GDFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRG 406
Query: 475 EEIISGAQRIHIPEFLAERAQACGIDVKT--ISTYIDSFRYGAPPHGGFGVGLERVVMLF 532
EEI+SGAQRIH L ER +A G+ + + Y D F YG PPH G G+GLERVVM +
Sbjct: 407 EEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFY 466
Query: 533 CGLNNIRKTSLYPRDPLRIAP 553
L NIR+ SL+PRDP R+ P
Sbjct: 467 LDLKNIRRASLFPRDPKRLRP 487
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Length = 548 | Back alignment and structure |
|---|
Score = 614 bits (1586), Expect = 0.0
Identities = 235/562 (41%), Positives = 331/562 (58%), Gaps = 57/562 (10%)
Query: 32 KKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVNGRE 91
A + +K E N+ +P+ + Q G +
Sbjct: 4 SMAATQEKKPQLPPVVLLK----TPELVSGENFKVMPMHQSQP----------CYKTGLK 49
Query: 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV 151
+T + L ++ ++ V IR RV R G + F+ +R+ + T Q L +K +++SKE V
Sbjct: 50 YTEIEELVPAMAEKTVTIRARVQAVRGKG-NMVFLFLRKGIYTCQALV-MKSETISKEFV 107
Query: 152 RFVRSLSNESIVDVIGVVSVPDVEIKGATQQ-VEVQIKKLYCVSRAAKT-PITIEDASRS 209
+F + +S ESI D+ G+V + I+ ATQQ VE+ + + VS A P+ IED +
Sbjct: 108 QFCQKISAESICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFP 167
Query: 210 EAEIEKAS--------------------------------------KEGVQLPRVNQDTR 231
+ +K + +V+QDTR
Sbjct: 168 SSVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTR 227
Query: 232 LNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY 291
L+NR++D+RT+ N IFRIQS +FR+FL S+ FVEIHTPKLI SSEGGS +F + Y
Sbjct: 228 LDNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEVKY 287
Query: 292 KGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY 351
+ A LAQSPQL+KQM+I GDF +VFE GPVFRAE+S T RHL EF GLD+EMEI ++Y
Sbjct: 288 FDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENY 347
Query: 352 SEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAG 411
E +D++++LF IFD + EL+ + KQYPFE L Y+P LRLT++E ++ML+ +G
Sbjct: 348 HECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLIYRP-FLRLTYKEAIEMLRASG 406
Query: 412 VEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVF 471
I D T E KLG+L+ KY T+FYIL ++P A+RPFYTMP D+ YSNS+DVF
Sbjct: 407 ETIGDYDDFTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVF 466
Query: 472 IRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVML 531
+RG+EI SGAQRIH PEFL +R G+D T+ YI+SFR+G+ PH G G+GLER+ ML
Sbjct: 467 VRGQEITSGAQRIHDPEFLMKRCIEKGVDPATLKDYIESFRFGSWPHAGCGIGLERITML 526
Query: 532 FCGLNNIRKTSLYPRDPLRIAP 553
+ G+ NIRK +L+PRDP+R+ P
Sbjct: 527 YLGIPNIRKVTLFPRDPIRLNP 548
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Length = 438 | Back alignment and structure |
|---|
Score = 599 bits (1548), Expect = 0.0
Identities = 152/465 (32%), Positives = 236/465 (50%), Gaps = 29/465 (6%)
Query: 90 REWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKE 149
+ L Q+V + G V + +G + F+ +R+R VQ T V E
Sbjct: 2 YRTHYSSEITEELNGQKVKVAGWVWEVKDLG-GIKFLWIRDRDGIVQI--TAPKKKVDPE 58
Query: 150 MVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASR 208
+ + + L +E +V V GVV A E+ +K+ ++RA P+ +
Sbjct: 59 LFKLIPKLRSEDVVAVEGVV----NFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVK 114
Query: 209 SEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFV 268
DTRL+NR +D+R IF+I+S V R F F+
Sbjct: 115 -----------------AELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFI 157
Query: 269 EIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAED 328
EIHTPK+IA ++EGG+ +F + Y + A LAQSPQL+KQ+ + RV+E P+FRAE+
Sbjct: 158 EIHTPKIIATATEGGTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEE 217
Query: 329 SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEP 388
T RHL E +D EM + EVM ++RL + + KEL+ + +
Sbjct: 218 HNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPK 277
Query: 389 LKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPL 448
L + R+++++ +++L D G EI D++TE ER LG+ ++E Y L++YP
Sbjct: 278 LPFP----RVSYDKALEILGDLGKEIPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPS 333
Query: 449 AVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYI 508
+PFY M + +FD+ RG EI SG QR H + L E+ + G++ ++ Y+
Sbjct: 334 EAKPFYIMKYDNKPEICRAFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPESFEFYL 393
Query: 509 DSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
+FRYG PPHGGFG+G ER++ L NIR+ L+PRD R+ P
Sbjct: 394 KAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPRDRRRLTP 438
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Length = 429 | Back alignment and structure |
|---|
Score = 552 bits (1424), Expect = 0.0
Identities = 140/465 (30%), Positives = 236/465 (50%), Gaps = 38/465 (8%)
Query: 90 REWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKE 149
+ + +EV+ G VH R +G F+++R++ Q + +
Sbjct: 2 YRSHFIADVTPEYDGKEVIWAGWVHLLRDLG-GKKFIILRDKTGLGQVVV-----DKNSS 55
Query: 150 MVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASR 208
+ L+ ES++ V G+V K A + +E+ +++ +S+A P+ + +
Sbjct: 56 AFGISQELTQESVIQVRGIV----KADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVK 111
Query: 209 SEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFV 268
+ + DTRL RV+D+R Q + +IQS FR+ L E F+
Sbjct: 112 A-----------------DIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFI 154
Query: 269 EIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAED 328
EI TPK+IA ++EGG+ +F + Y G+ A LAQSPQL+K++ + G RVFE P +RAE+
Sbjct: 155 EIFTPKIIASATEGGAQLFPVIYFGKEAFLAQSPQLYKEL-MAGVVERVFEVAPAWRAEE 213
Query: 329 SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEP 388
S T HL EF +DVEM Y++VM +++++ I + K+EL+ + + P
Sbjct: 214 SDTPFHLAEFISMDVEMAFA-DYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPPEVK 272
Query: 389 LKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPL 448
+ K RL + E +++L+ G I D+ T R L E+ + Y + +P
Sbjct: 273 IPIK----RLKYTEAIEILRSKGYNIKFGDDIGTPELRILN----EELKEDLYFIVDWPS 324
Query: 449 AVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYI 508
RPFYT +N S SFD+ + EI+SG+ R H E L E + G+ ++ ++
Sbjct: 325 DARPFYTKSKSENPELSESFDLIYKFLEIVSGSTRNHKREVLEEALKKKGLKPESFEFFL 384
Query: 509 DSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
F YG PPH GFG+GL R++++ G+ ++++ +PRD R+ P
Sbjct: 385 KWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPFPRDKKRLTP 429
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Length = 422 | Back alignment and structure |
|---|
Score = 544 bits (1404), Expect = 0.0
Identities = 153/451 (33%), Positives = 233/451 (51%), Gaps = 42/451 (9%)
Query: 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIV 163
QEV + G +H R +G ++ F+++R+R VQ + + ES +
Sbjct: 13 GQEVELLGFLHWRRDLG-RIQFLLLRDRSGVVQVVTGGL------------KLPLPESAL 59
Query: 164 DVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQ 222
V G+V VE A +EVQ K++ +S A + P+ I
Sbjct: 60 RVRGLV----VENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEW-------------- 101
Query: 223 LPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG 282
R N DT L R + +R + ++Q+ + FR++L ++F EI TPK++ +EG
Sbjct: 102 --RANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEG 159
Query: 283 GSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLD 342
GS +F +DY + A LAQSPQL+KQ+ + F RV+E PV+R E+ +T RHL E+ LD
Sbjct: 160 GSGLFGVDYFEKRAYLAQSPQLYKQIMVGV-FERVYEVAPVWRMEEHHTSRHLNEYLSLD 218
Query: 343 VEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEE 402
VEM ++M + + L + + N E+ + +P P RLT E
Sbjct: 219 VEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIP----RLTHAE 274
Query: 403 GVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNS 462
++LK+ + DL+ E+ER LG+ E++G+++ + RYP +VRPFYT P D
Sbjct: 275 AKRILKE-ELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEEDG- 332
Query: 463 LYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFG 522
+ SFD+ RG EI SG QRIH E L E +A G+D + Y++ F+YG PPHGGF
Sbjct: 333 -TTRSFDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFA 391
Query: 523 VGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
+G ER+ GL N+R +PRD R+ P
Sbjct: 392 IGAERLTQKLLGLPNVRYARAFPRDRHRLTP 422
|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Length = 434 | Back alignment and structure |
|---|
Score = 357 bits (919), Expect = e-119
Identities = 129/466 (27%), Positives = 218/466 (46%), Gaps = 37/466 (7%)
Query: 91 EWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEM 150
E + L ++V + G V+T VG K F+ +R+ VQ V + V +E
Sbjct: 3 EKVYCQEVKPELDGKKVRLAGWVYTNMRVG-KKIFLWIRDSTGIVQA--VVAKNVVGEET 59
Query: 151 VRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSE 210
+ L ES V V G+V + A EV ++KL + ++ PI
Sbjct: 60 FEKAKKLGRESSVIVEGIV----KADERAPGGAEVHVEKLEVIQAVSEFPIPE------- 108
Query: 211 AEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEI 270
+ + + L+ R + IRT I +++ + R++LL + + E+
Sbjct: 109 -----------NPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEV 157
Query: 271 HTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 330
P L+ G+ EGG+ +F+L Y + A L+QS QL+ + +I G +V+ P FRAE S
Sbjct: 158 FPPILVTGAVEGGATLFKLKYFDKYAYLSQSAQLYLEAAIFG-LEKVWSLTPSFRAEKSR 216
Query: 331 THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYP-FEPL 389
T RHL EF L++E ++M + + L + + KKE+E +
Sbjct: 217 TRRHLTEFWHLELEAAWM-DLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLTTLKNT 275
Query: 390 KYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLA 449
+ P R++++E + +L+ GV ++ DL + ER L E++ + ++ YP
Sbjct: 276 E--PPFPRISYDEAIDILQSKGVNVEWGDDLGADEERVLT----EEFD-RPFFVYGYPKH 328
Query: 450 VRPFYTMPCHDNSLYSNSFDVFIRGE--EIISGAQRIHIPEFLAERAQACGIDVKTISTY 507
++ FY ++ + D+ EII G+QR + L R G+D K Y
Sbjct: 329 IKAFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWY 388
Query: 508 IDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
+D RYG+ PH GFG+G+ER+V L++IR +L+PR P R+ P
Sbjct: 389 LDLRRYGSVPHSGFGLGVERLVAWVLKLDHIRWAALFPRTPARLYP 434
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Length = 456 | Back alignment and structure |
|---|
Score = 329 bits (846), Expect = e-108
Identities = 111/468 (23%), Positives = 206/468 (44%), Gaps = 51/468 (10%)
Query: 100 GSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSN 159
L+ + V +G + R L FV +R+ QC + + + V+ L+
Sbjct: 26 AGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQC--VIFGKELCEP--EKVKLLTR 81
Query: 160 ESIVDVIG-VVSVPD---VEIKGATQQVEVQIKKLYCVSRAA--KTPITIEDASRSEAEI 213
E +++ G + + +E+Q+ + + + I +D+S
Sbjct: 82 ECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSI----- 136
Query: 214 EKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTP 273
++ NR I IR+ Q + +++S++ FR++ +F EI P
Sbjct: 137 ---------------PQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPP 181
Query: 274 KLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHR 333
++ EGGS +F+L Y + A L QS QL+ + I G+ F +RAE S T R
Sbjct: 182 TIVKTQCEGGSTLFKLQYFNEPAYLTQSSQLYLESVIAS-LGKSFCMLSSYRAEQSRTVR 240
Query: 334 HLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKP 393
HL E+ L+ E+ + ++++ ++ L T+ D + V ++ P P
Sbjct: 241 HLAEYLHLEAELPFI-SFEDLLNHLEDLVCTVIDNVMAVHGDKIRK------MNPHLKLP 293
Query: 394 KT--LRLTFEEGVQMLKDAGV--EIDPLG---DLNTESERKLGQLVLEKYGTEFYILHRY 446
R+T+ + ++ D G+ + P D++ + ER++ ++ G + +
Sbjct: 294 TRPFKRMTYADAIKYCNDHGILNKDKPFEYGEDISEKPERQMT----DEIG-CPIFMIHF 348
Query: 447 PLAVRPFYTMPCHDNSLYSNSFDVFIRG-EEIISGAQRIHIPEFLAERAQACGIDVKTIS 505
P ++ FY + + S D+ + G EI+ G+ RI + L +A G++
Sbjct: 349 PSKMKAFYMSKVPGHPDLTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYY 408
Query: 506 TYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
Y +YG+ PHGG+G+G+ER+VM G ++IRK LYPR R P
Sbjct: 409 WYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVCLYPRYLERCEP 456
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Length = 435 | Back alignment and structure |
|---|
Score = 327 bits (841), Expect = e-107
Identities = 116/465 (24%), Positives = 199/465 (42%), Gaps = 53/465 (11%)
Query: 103 KDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESI 162
+++ V I+G +H R G L F ++R+ +Q + +++ E
Sbjct: 10 RNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQV--LLMDKLCQTYDAL---TVNTECT 64
Query: 163 VDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQ 222
V++ G + E K A E+ + A I V
Sbjct: 65 VEIYGAI-KEVPEGKEAPNGHELIADFWKIIGNAPPGGIDN-----------------VL 106
Query: 223 LPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG 282
+ D L+NR + IR + R+++ R+ + +VE+ P L+ EG
Sbjct: 107 NEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEG 166
Query: 283 GSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLD 342
GS +F LDY G+ + L QS QL+ + I G VF +RAE S T RHL E+ ++
Sbjct: 167 GSTLFNLDYFGEQSFLTQSSQLYLETCIPT-LGDVFCIAQSYRAEKSRTRRHLAEYAHVE 225
Query: 343 VEMEIKKHYSEVMDIVDRLFVTIFDGL--NNVCKKELEAVAKQY-----PFEPLKYKPKT 395
E ++M+ ++ L D L + KK LE + ++ PF
Sbjct: 226 AECPFITL-DDLMEKIEELVCDTVDRLLADEEAKKLLEHINPKFQPPERPFL-------- 276
Query: 396 LRLTFEEGVQMLKDAGVEIDPLG------DLNTESERKLGQLVLEKYGTEFYILHRYPLA 449
R+ +++ ++ L++ VE + D+ +ER + + + +L+R+P
Sbjct: 277 -RMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMT----DTIN-KPILLNRFPSE 330
Query: 450 VRPFYTMPCHDNSLYSNSFDVFIRG-EEIISGAQRIHIPEFLAERAQACGIDVKTISTYI 508
++ FY ++ + S D+ + G EI+ G+ RI + L++ + ID K Y+
Sbjct: 331 IKAFYMQRDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYL 390
Query: 509 DSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
D YG PHGG+G+GLER + N+IR LYPR R P
Sbjct: 391 DQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVGRCVP 435
|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Length = 294 | Back alignment and structure |
|---|
Score = 270 bits (694), Expect = 2e-87
Identities = 65/326 (19%), Positives = 118/326 (36%), Gaps = 51/326 (15%)
Query: 235 RVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTP-------KLIAGSSEGGSAVF 287
++I + IQ+++ F + E F + L + G
Sbjct: 2 NAVEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPA 61
Query: 288 RLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAED--SYTHRHLCEFTGLDVEM 345
++ G L S LHKQ++I ++F P R E RH EFT LD E+
Sbjct: 62 EVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEV 121
Query: 346 EIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQ 405
E + ++M +++RL +F +E FE + E ++
Sbjct: 122 E-RAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTK---RFE---------VFEYSEVLE 168
Query: 406 MLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYS 465
D E + E + + P R FY + +
Sbjct: 169 EFGS---------DEKASQEME-----------EPFWIINIP---REFYDR---EVDGFW 202
Query: 466 NSFDVFI--RGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGA-PPHGGFG 522
++D+ + E+ SG +R E + + + G++ + Y++ + G P G G
Sbjct: 203 RNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAG 262
Query: 523 VGLERVVMLFCGLNNIRKTSLYPRDP 548
+G+ER+V G +I + +PR P
Sbjct: 263 IGVERLVRFIVGAKHIAEVQPFPRIP 288
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Length = 580 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 2e-28
Identities = 91/320 (28%), Positives = 139/320 (43%), Gaps = 59/320 (18%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
G+L + +EV++ G V+ R +G L F+ +R+R VQ P S + VR
Sbjct: 8 GSLRETHVGEEVVLEGWVNRRRDLGG-LIFLDLRDREGLVQL--VAHPASPAYATAERVR 64
Query: 156 SLSNESIVDVIGVVSV-PDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIE 214
E +V G+V + P+ + AT +VEV++ L ++ A P ++ R E E E
Sbjct: 65 ---PEWVVRAKGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKE 121
Query: 215 KASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPK 274
+++ RL R +D+R Q R++ +V FL E FV++ TP
Sbjct: 122 -----------ASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPF 170
Query: 275 LIAGSSEGGSAVFRLDY-------KGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAE 327
L + EG R D+ G L QSPQL KQM + R F+ FR E
Sbjct: 171 LTKSTPEGA----R-DFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDE 225
Query: 328 DSYTHRHLCEFTGLDVEMEIKKHYS-----EVMDIVDRLFVTIFDGLNNVCKKELEAVAK 382
D R +FT LD+EM S +V+++ +RL +F +E V
Sbjct: 226 DLRADRQP-DFTQLDLEM------SFVEVEDVLELNERLMAHVF--------REALGVEL 270
Query: 383 QYPFEPLKYKPKTLRLTFEE 402
PF RL++EE
Sbjct: 271 PLPFP---------RLSYEE 281
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Length = 580 | Back alignment and structure |
|---|
Score = 69.8 bits (172), Expect = 8e-13
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 21/121 (17%)
Query: 452 PFYTMPCHDN---------SLYSNSFDVFIRGEEIISGAQRIHIPEFLAERA-QACGIDV 501
PF T P ++ + + ++D+ + G E+ G+ RIH P L R + GI
Sbjct: 444 PF-TSPHPEDLPLLEKDPGRVRALAYDLVLNGVEVGGGSIRIHDPR-LQARVFRLLGIGE 501
Query: 502 KTIST----YIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYP-----RDPLRIA 552
+ ++++ YGAPPHGG GL+R++ L G +IR+ +P +DPL A
Sbjct: 502 EEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKNKEGKDPLTGA 561
Query: 553 P 553
P
Sbjct: 562 P 562
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Length = 585 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 9e-24
Identities = 81/322 (25%), Positives = 131/322 (40%), Gaps = 69/322 (21%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
G L S Q+V + G V+ R +G+ L F+ +R+R VQ PD + ++
Sbjct: 7 GQLRLSHVGQQVTLCGWVNRRRDLGS-LIFIDMRDREGIVQV--FFDPDR--ADALKLAS 61
Query: 156 SLSNESIVDVIGVVSV-PDVEI--KGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAE 212
L NE + V G V + I AT ++EV L ++RA P+
Sbjct: 62 ELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNH------- 114
Query: 213 IEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHT 272
++ RL R +D+R + ++++ ++ R+F+ F++I T
Sbjct: 115 ------------VNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIET 162
Query: 273 PKLIAGSSEGGSAVFRLDY-------KGQSACLAQSPQLHKQMSICGDFGRVFETGPVFR 325
P L + EG R DY KG+ L QSPQL KQ+ + F R ++ FR
Sbjct: 163 PMLTKATPEGA----R-DYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFR 217
Query: 326 AEDSYTHRHLCEFTGLDVEMEIKKHYS-----EVMDIVDRLFVTIFDGLNNVCKKELEAV 380
ED R EFT +DVE S +V ++++ L ++ + V +L
Sbjct: 218 DEDLRADRQP-EFTQIDVET------SFMTAPQVREVMEALVRHLWLEVKGV---DLG-- 265
Query: 381 AKQYPFEPLKYKPKTLRLTFEE 402
F +TF E
Sbjct: 266 ----DFP---------VMTFAE 274
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Length = 585 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 2e-12
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 21/121 (17%)
Query: 452 PFYTMPCHDN---------SLYSNSFDVFIRGEEIISGAQRIHIPEFLAERA-QACGIDV 501
PF T P + +N++D+ I G E+ G+ RIH + + + GI+
Sbjct: 450 PF-TSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHNGD-MQQTVFGILGINE 507
Query: 502 KTIST----YIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYP-----RDPLRIA 552
+ +D+ +YG PPH G GL+R+ ML G +NIR +P + A
Sbjct: 508 EEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTEA 567
Query: 553 P 553
P
Sbjct: 568 P 568
|
| >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Length = 521 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 8e-22
Identities = 111/513 (21%), Positives = 182/513 (35%), Gaps = 131/513 (25%)
Query: 102 LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNES 161
L D + + GR+H R G KL F +R +Q +A + +E + L
Sbjct: 53 LTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLR--- 109
Query: 162 IVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGV 221
D+IGV P G T++ E+ I EI S
Sbjct: 110 RGDIIGVQGNP-----GKTKKGELSII--------PY-------------EITLLSPCLH 143
Query: 222 QLPRV-----NQDTRLNNRVIDIRTLANQG---IFRIQSQVGNIFRQFLLSENFVEIHTP 273
LP + +++TR R +D+ + N F I+S++ R FL F+EI TP
Sbjct: 144 MLPHLHFGLKDKETRYRQRYLDL--ILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETP 201
Query: 274 KL--IAGSSEGGSAVFR--------LD---YKGQSACLAQSPQLHKQMSICGDFGRVFET 320
+ I G G A + LD Y + +P+L+ +M + G RV+E
Sbjct: 202 MMNIIPG---GAVA--KPFITYHNELDMNLY------MRIAPELYHKMLVVGGIDRVYEI 250
Query: 321 GPVFRAE--DSYTHRHLCEFTGLDVEMEI---KKHYSEVMDIVDRLFVTIFDGLNNVCKK 375
G FR E D H EFT E Y ++M+I +++ + + K
Sbjct: 251 GRQFRNEGID---LTHNPEFT----TCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKV 303
Query: 376 ELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 435
+ + + P R+ E ++ K G+++ TE RK+ +
Sbjct: 304 TYHPDGPEGQAYDVDFTPPFRRINMVEELE--KALGMKLPETNLFETEETRKILDDICVA 361
Query: 436 YGTEF--------------------------YILHRYPLAVRPFYTMPCHDNSLYSNSFD 469
E +I +P + P + F+
Sbjct: 362 KAVECPPPRTTARLLDKLVGEFLEVTCINPTFICD-HPQIMSPL-AKWHRSKEGLTERFE 419
Query: 470 VFIRGEEIISG----------AQRIHIPEF---LAERAQ----ACGIDVKTISTYIDSFR 512
+F+ +EI + Q F +A A ID + +
Sbjct: 420 LFVMKKEICNAYTELNDPMRQRQL-----FEEQAKAKAAGDDEAMFID----ENFCTALE 470
Query: 513 YGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYP 545
YG PP G+G+G++RV M NNI++ L+P
Sbjct: 471 YGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFP 503
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Length = 345 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 4e-18
Identities = 58/348 (16%), Positives = 107/348 (30%), Gaps = 90/348 (25%)
Query: 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKL---IAGSSEGGSAV-FRLDYKGQSACLAQ-- 300
++ + R+F +E+ TP + V F + G
Sbjct: 35 NLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVT---DIHLVPFETRFVGPGHSQGMNL 91
Query: 301 ----SPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI---KKHYSE 353
SP+ H + + G VF+ FR E+ H EFT +E
Sbjct: 92 WLMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEMGR-YHNPEFT----MLEWYRPHYDMYR 146
Query: 354 VMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLT--------FEEGVQ 405
+M+ VD L + V E L Y+ LR + +
Sbjct: 147 LMNEVDDLL---------------QQVLDCPAAESLSYQQAFLRYLEIDPLSADKTQLRE 191
Query: 406 MLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEF-----------YILHRYPLAVRPFY 454
+ + ++E L+ + ++ H +P +
Sbjct: 192 VAAKLDLSNVA------DTEEDRDTLLQLLFT-FGVEPNIGKEKPTFVYH-FPASQASL- 242
Query: 455 TMPCHDNSLYSNSFDVFIRGEEIISG----------AQRIHIPEF---LAERAQ----AC 497
++ + F+V+ +G E+ +G QR F +RA
Sbjct: 243 AQISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQR-----FEQDNRKRAARGLPQH 297
Query: 498 GIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYP 545
ID I++ + G P G +G++R+VML G + + +
Sbjct: 298 PID----QNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFS 341
|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Length = 493 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 1e-15
Identities = 115/510 (22%), Positives = 199/510 (39%), Gaps = 143/510 (28%)
Query: 103 KDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESI 162
+ EV + GR+ T R +G K F +++ +Q V+ D V ++ + +
Sbjct: 55 QQIEVAVAGRIMTKRGMG-KAGFAHIQDVTGQIQIY--VRQDDVGEQQYELFKISD---L 108
Query: 163 VDVIGVVSVPDVEIKGA---TQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKE 219
D++GV +G T+ E+ IK VS E +K
Sbjct: 109 GDIVGV--------RGTMFKTKVGELSIK----VS-----------------SYEFLTKA 139
Query: 220 GVQLPRV-----NQDTRLNNRVIDIRTLANQG---IFRIQSQVGNIFRQFLLSENFVEIH 271
LP + + R R +D+ + N F +S + R++L S ++E+
Sbjct: 140 LRPLPEKYHGLKDIEQRYRQRYLDL--IMNPESKKTFITRSLIIQSMRRYLDSHGYLEVE 197
Query: 272 TPKL--IAGSSEGGSAVFR--------LD---YKGQSACLAQSPQLH-KQMSICGDFGRV 317
TP + +AG G +A R LD Y + + +LH K++ I G +V
Sbjct: 198 TPMMHAVAG---GAAA--RPFITHHNALDMTLY------MRIAIELHLKRL-IVGGLEKV 245
Query: 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEI---KKHYSEVMDIVDRLFVTIFDGLNNVCK 374
+E G VFR E T RH EFT +E+ + ++M + + L I +
Sbjct: 246 YEIGRVFRNEGIST-RHNPEFT----MLELYEAYADFRDIMKLTENLIAHIATEVLG--T 298
Query: 375 KELEAVAKQYPFEP-----------LKYKPKTLR--LTFEEGVQMLKDAGVEIDPLGDLN 421
+++ P +Y ++ EE ++ K+ GVE+ P
Sbjct: 299 TKIQYGEHLVDLTPEWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEVAP----- 353
Query: 422 TESERKLGQLVLEKYGTEF---------YILHRYPLAVRPFYTMPCHDNSLYSNSFDVFI 472
G +V E + + +I +P+ + P D+ +++ F++FI
Sbjct: 354 ---HMTFGHIVNEFFE-QKVEDKLIQPTFIYG-HPVEISPL-AKKNPDDPRFTDRFELFI 407
Query: 473 RGEEIISG----------AQRIHIPEF---LAERAQ----ACGIDVKTISTYIDSFRYGA 515
G E + QR F L ER Q A +D ++++ YG
Sbjct: 408 VGREHANAFTELNDPIDQRQR-----FEEQLKEREQGNDEAHEMD----EDFLEALEYGM 458
Query: 516 PPHGGFGVGLERVVMLFCGLNNIRKTSLYP 545
PP GG G+G++R+VML +IR L+P
Sbjct: 459 PPTGGLGIGVDRLVMLLTNSPSIRDVLLFP 488
|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Length = 504 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 3e-15
Identities = 87/355 (24%), Positives = 141/355 (39%), Gaps = 94/355 (26%)
Query: 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKL--IAGSSEGGSAVFR--------LD---YKG 293
F ++S++ RQF+++ F+E+ TP + I G G SA R LD Y
Sbjct: 182 TFVVRSKILAAIRQFMVARGFMEVETPMMQVIPG---GASA--RPFITHHNALDLDMY-- 234
Query: 294 QSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI---KKH 350
L +P+L+ + + G F RVFE FR E RH EFT ME+
Sbjct: 235 ----LRIAPELYLKRLVVGGFERVFEINRNFRNEGISV-RHNPEFT----MMELYMAYAD 285
Query: 351 YSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEP-----------LKYKP---KTL 396
Y +++++ + LF T+ + ++ + F KY+P
Sbjct: 286 YHDLIELTESLFRTLAQEVLG--TTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMAD 343
Query: 397 RLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEF---------YILHRYP 447
F+ + + G+ ++ LG++V E + E +I YP
Sbjct: 344 LDNFDAAKALAESIGITVEK--------SWGLGRIVTEIFD-EVAEAHLIQPTFITE-YP 393
Query: 448 LAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISG----------AQRIHIPEF---LAERA 494
V P N ++ F+ FI G EI +G A+R F + +A
Sbjct: 394 AEVSPL-ARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAER-----FQEQVNAKA 447
Query: 495 Q----ACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYP 545
A D Y+ + YG PP G G+G++R++MLF + IR L+P
Sbjct: 448 AGDDEAMFYD----EDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFP 498
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Length = 529 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 3e-14
Identities = 87/356 (24%), Positives = 131/356 (36%), Gaps = 92/356 (25%)
Query: 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKL--IAGSSEGGSAVFR--------LD---YKG 293
FR +++ R+F+ +F+E+ TP L I G G +A + LD +
Sbjct: 203 TFRARTKAIASIRKFMGDADFMEVETPMLHPIPG---GAAA--KPFVTHHNALDMEMF-- 255
Query: 294 QSACLAQSPQLH-KQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI---KK 349
L +P+L+ K++ I G F RVFE FR E RH EFT ME
Sbjct: 256 ----LRIAPELYLKRL-IVGGFERVFEINRNFRNEGVSP-RHNPEFT----MMEFYAAYT 305
Query: 350 HYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEP-----------LKYKP---KT 395
Y +MD +RL ++ ++ KY P
Sbjct: 306 DYRWLMDFTERLIRQAAVDALG--TATIQYQGRELDLAQPFHRLTITQAIQKYAPSYTDG 363
Query: 396 LRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEF---------YILHRY 446
LK GV++ +G L L + E +I+ Y
Sbjct: 364 QLSDDAFLRSELKRLGVDVTQ----PAFLNAGIGALQLALFE-ETAEAQLWEPTFIID-Y 417
Query: 447 PLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISG----------AQRIHIPEF---LAER 493
P+ V P + + F++FI G EI +G A R F + ++
Sbjct: 418 PIEVSPL-ARESDTVAGITERFELFITGREIANGFSELNDPEDQAAR-----FKKQVEQK 471
Query: 494 AQ----ACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYP 545
A D + YI + YG PP GG G+G++R+VML IR L+P
Sbjct: 472 DAGDEEAMFFD----ADYIRALEYGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFP 523
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 8e-08
Identities = 76/527 (14%), Positives = 148/527 (28%), Gaps = 157/527 (29%)
Query: 10 VQEEVDSSSQSISKKAAKKEAAKKAKEER---------RKEAEAAASAASALSIEEEGPL 60
++ D +SK+ K K+ E E L
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV-------EEVL 87
Query: 61 ANNYGDV--PLQELQSVNDPQ--TGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTT 116
NY + P++ P T + E + R + D +V + V
Sbjct: 88 RINYKFLMSPIKT--EQRQPSMMTRMYIEQRD-RLYN----------DNQVFAKYNVSRL 134
Query: 117 RPVGNKLAFVVVRERVS---TV--------QCLA--TVKPDSVSKEMVRFVRSLSNESIV 163
+P KL ++ R + + +A V +M + L+
Sbjct: 135 QPY-LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----- 188
Query: 164 DVIGVVSVPDVEIKGATQQVEVQIKKLYC--VSRAAKTPITIEDASRSEAEI--EKASKE 219
+ + P+ ++ Q++ QI + ++ + I + K +
Sbjct: 189 --LKNCNSPETVLE-MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 220 G------VQLPRVNQD----------TRLNNRVIDIRTLANQGIFRI--------QSQVG 255
VQ + TR +V D + A + +V
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTR-FKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 256 NIFRQFL------LSENFVEIHTP---KLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHK 306
++ ++L L + + P +IA S G A D C +L
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLA--TWDNWKHVNC----DKLTT 357
Query: 307 QMSIC------GDFGRVFETGPVFRAEDSY-THRHLCEFTGLDVEMEIKKHYSEVMDIVD 359
+ ++ ++F+ VF ++ L ++ S+VM +V+
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFP-PSAHIPTILLSLIWF---DVI----KSDVMVVVN 409
Query: 360 RLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGD 419
+L K L V KQ K T+ + + +
Sbjct: 410 KL-----------HKYSL--VEKQ-------PKESTISI---PSIYLEL----------K 436
Query: 420 LNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFY-TMPCHDNSLYS 465
+ E+E L + +++ Y P P D YS
Sbjct: 437 VKLENEYALHRSIVDHY--------NIPKTFDSDDLIPPYLDQYFYS 475
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 6e-05
Identities = 32/224 (14%), Positives = 65/224 (29%), Gaps = 69/224 (30%)
Query: 330 YTHRHLCEFTGLDVEM-EIKKHYSEVMDIVDRLFVTIF------DGLNNV-CKKELEAVA 381
+ H H+ D E E + Y +++ + + FV F D ++ K+E++ +
Sbjct: 2 HHHHHM------DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII 55
Query: 382 KQ-YPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEF 440
TL EE VQ + + I+ Y
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN--------------------YK--- 92
Query: 441 YILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGID 500
+++ + P +Y D ++ + + ++ R Q
Sbjct: 93 FLMSPI----KTEQRQPSMMTRMYIEQRDRLYNDNQVFA---KYNVS-----RLQ----P 136
Query: 501 VKTISTYIDSFRYGAPPHGGFGV-GLERVVMLFCGLNNIRKTSL 543
+ + R P + G +L G KT +
Sbjct: 137 YLKLRQALLELR----PAKNVLIDG-----VLGSG-----KTWV 166
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 1e-04
Identities = 43/305 (14%), Positives = 95/305 (31%), Gaps = 66/305 (21%)
Query: 97 ALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRS 156
L+ +D + V TT P + +R+ ++T V D ++ + +
Sbjct: 310 YLDCRPQD----LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 157 LSNESIVDVIGVVSV--PDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIE 214
L + +SV P I + + ++ + + + + +E
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHI---PTIL---LSLIWFDV-IKSDVMVVVNKLHKYSLVE 418
Query: 215 KASKE------GVQL---PRVNQDTRLNNRVID----IRTLANQGIFRI----------- 250
K KE + L ++ + L+ ++D +T + +
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 251 -------QSQVGNIFRQFLLSENFVE---IHTPKLIAGSSEGGSAVFRLD-YKGQSACLA 299
+ +FR L F+E H S + + +L YK
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY--ICD 536
Query: 300 QSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEM----EIKKHYSEVM 355
P+ + ++ DF + + E + ++T L + + E + + E
Sbjct: 537 NDPKYERLVNAILDF--------LPKIE---ENLICSKYTDL-LRIALMAEDEAIFEEAH 584
Query: 356 DIVDR 360
V R
Sbjct: 585 KQVQR 589
|
| >3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* Length = 290 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 8e-05
Identities = 37/215 (17%), Positives = 69/215 (32%), Gaps = 29/215 (13%)
Query: 194 SRAAKTP-ITIEDASRSEAEIEKASKEGVQLPRVNQDTR---LNNRVIDIRTLANQGIFR 249
S A P +T R E + + + + ++ L+ R D++ + +
Sbjct: 18 SHGASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAEEREN 77
Query: 250 IQSQVGNIFRQFLLSENFVEIHTPKLI------AGSSEGGSAVFRLDYKGQ--------- 294
++ +F + F+EI +P LI + + + + ++
Sbjct: 78 YLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPML 137
Query: 295 SACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVE-MEIKKHYSE 353
+ L L K D ++FE GP +R E HL EFT L M
Sbjct: 138 TPNLYNY--LRKLDRALPDPIKIFEIGPCYRKESD-GKEHLEEFTMLVFWQMGSGCTREN 194
Query: 354 VMDIVDRLF------VTIFDGLNNVCKKELEAVAK 382
+ I+ I V L+ +
Sbjct: 195 LESIITDFLNHLGIDFKIVGDSCMVFGDTLDVMHG 229
|
| >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Length = 701 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 6e-04
Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 37/110 (33%)
Query: 454 YTMPCHDNSLYSNSFDVFIRGEEI-----ISGAQRIHIPEFLAERAQACGIDVKTISTYI 508
Y P +V+ ++ ++ P L+ GIDV +
Sbjct: 292 YYTP-------ETQTEVYAYHPKLKEWLEVATFGVYS-PVALS----KYGIDVPVM---- 335
Query: 509 DSFRYGAPPHGGFGVGLERVVMLFCGLNNIRK---TSLYPRD--PLRIAP 553
G+G+ER+ M+ ++R+ Y +A
Sbjct: 336 -----------NLGLGVERLAMISGNFADVREMVYPQFYEHKLNDRNVAS 374
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 553 | |||
| 3i7f_A | 548 | Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi | 100.0 | |
| 1eov_A | 487 | ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy | 100.0 | |
| 3nem_A | 438 | Aspartyl-tRNA synthetase; rossmann fold, OB fold, | 100.0 | |
| 3m4p_A | 456 | Ehasnrs, asparaginyl-tRNA synthetase, putative; am | 100.0 | |
| 3bju_A | 521 | Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 100.0 | |
| 4ex5_A | 529 | Lysine--tRNA ligase; structural genomics, niaid, n | 100.0 | |
| 1wyd_A | 429 | Hypothetical aspartyl-tRNA synthetase; archaea, LI | 100.0 | |
| 2xgt_A | 435 | Asparaginyl-tRNA synthetase, cytoplasmic; ligase, | 100.0 | |
| 1n9w_A | 422 | Aspartyl-tRNA synthetase 2; biosynthetic protein; | 100.0 | |
| 1e1o_A | 504 | Lysyl-tRNA synthetase, heat inducible; ligase, ami | 100.0 | |
| 1x54_A | 434 | Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe | 100.0 | |
| 3a74_A | 493 | Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, | 100.0 | |
| 1l0w_A | 580 | Aspartyl-tRNA synthetase; space-grown crystal, dim | 100.0 | |
| 1c0a_A | 585 | Aspartyl tRNA synthetase; protein-RNA complex, lig | 100.0 | |
| 4ah6_A | 617 | Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo | 100.0 | |
| 3a5y_A | 345 | GENX, putative lysyl-tRNA synthetase; aminoacyl-tR | 100.0 | |
| 1nnh_A | 294 | Asparaginyl-tRNA synthetase-related peptide; struc | 100.0 | |
| 3qtc_A | 290 | Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet | 99.93 | |
| 12as_A | 330 | Asparagine synthetase; ligase, nitrogen fixation; | 99.89 | |
| 3dsq_A | 288 | Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t | 99.74 | |
| 1b7y_A | 350 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 99.56 | |
| 2rhq_A | 294 | Phenylalanyl-tRNA synthetase alpha chain; heterote | 99.52 | |
| 3pco_A | 327 | Phenylalanyl-tRNA synthetase, alpha subunit; amino | 99.3 | |
| 3l4g_A | 508 | Phenylalanyl-tRNA synthetase alpha chain; aminoacy | 99.18 | |
| 2du3_A | 534 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 98.61 | |
| 3cmq_A | 415 | Phenylalanyl-tRNA synthetase, mitochondrial; class | 98.6 | |
| 3od1_A | 400 | ATP phosphoribosyltransferase regulatory subunit; | 98.59 | |
| 3rac_A | 373 | Histidine-tRNA ligase; structural genomics, PSI-bi | 98.57 | |
| 3lc0_A | 456 | Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t | 98.55 | |
| 2du7_A | 549 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 98.44 | |
| 2odr_B | 648 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 98.25 | |
| 2odr_D | 685 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 98.24 | |
| 2odr_A | 665 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 98.24 | |
| 2odr_C | 701 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 98.2 | |
| 2dq3_A | 425 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 98.19 | |
| 1evl_A | 401 | Threonyl-tRNA synthetase; amino acid recognition, | 98.08 | |
| 1qe0_A | 420 | Histidyl-tRNA synthetase; class II tRNA synthetase | 98.02 | |
| 2i4l_A | 458 | Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud | 97.97 | |
| 1z7m_A | 344 | ATP phosphoribosyltransferase regulatory subunit; | 97.93 | |
| 1wu7_A | 434 | Histidyl-tRNA synthetase; ligase, structural genom | 97.85 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 97.84 | |
| 1ses_A | 421 | Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A | 97.8 | |
| 1hc7_A | 477 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.77 | |
| 2j3l_A | 572 | Prolyl-tRNA synthetase; class II aminoacyl- T synt | 97.77 | |
| 2dq0_A | 455 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 97.76 | |
| 1h4v_B | 421 | Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA | 97.73 | |
| 3err_A | 536 | Fusion protein of microtubule binding domain from | 97.73 | |
| 4e51_A | 467 | Histidine--tRNA ligase; seattle structural genomic | 97.72 | |
| 3net_A | 465 | Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas | 97.71 | |
| 1htt_A | 423 | Histidyl-tRNA synthetase; complex (tRNA synthetase | 97.7 | |
| 3uh0_A | 460 | Threonyl-tRNA synthetase, mitochondrial; threonine | 97.69 | |
| 1nj8_A | 459 | Proline-tRNA synthetase, proline--tRNA ligase; cla | 97.67 | |
| 3vbb_A | 522 | Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l | 97.64 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 97.63 | |
| 1wle_A | 501 | Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo | 97.62 | |
| 3lss_A | 484 | Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.56 | |
| 1nj1_A | 501 | PROR, proline-tRNA synthetase, proline--tRNA ligas | 97.54 | |
| 2cja_A | 522 | Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE | 97.48 | |
| 3a32_A | 471 | Probable threonyl-tRNA synthetase 1; aeropyrum per | 97.46 | |
| 3ial_A | 518 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.41 | |
| 4hvc_A | 519 | Bifunctional glutamate/proline--tRNA ligase; ligas | 97.41 | |
| 3qne_A | 485 | Seryl-tRNA synthetase, cytoplasmic; amino acid bio | 97.4 | |
| 4g84_A | 464 | Histidine--tRNA ligase, cytoplasmic; synthetase; 2 | 97.34 | |
| 1usy_A | 275 | ATP phosphoribosyltransferase regulatory subunit; | 97.28 | |
| 4g85_A | 517 | Histidine-tRNA ligase, cytoplasmic; synthetase; 3. | 97.26 | |
| 2rhq_B | 795 | Phenylalanyl-tRNA synthetase beta chain; heterotet | 97.18 | |
| 1ati_A | 505 | Glycyl-tRNA synthetase; protein biosynthesis, liga | 96.93 | |
| 3ikl_A | 459 | DNA polymerase subunit gamma-2, mitochondrial; tra | 96.9 | |
| 3mf2_A | 346 | BLL0957 protein; aminoacyl-tRNA synthetase, seryl- | 96.86 | |
| 2zt5_A | 693 | Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP | 96.46 | |
| 1ynx_A | 114 | Replication factor-A protein 1; canonical OB fold, | 96.46 | |
| 1g5h_A | 454 | Mitochondrial DNA polymerase accessory subunit; in | 96.21 | |
| 2k50_A | 115 | Replication factor A related protein; uncharacteri | 96.14 | |
| 3kf6_A | 159 | Protein STN1; OB fold, chromosomal protein, DNA-bi | 95.98 | |
| 3dm3_A | 105 | Replication factor A; probably plays AN essential | 95.81 | |
| 3e0e_A | 97 | Replication protein A; structural genomics, PSI-2, | 95.55 | |
| 3l4g_B | 589 | Phenylalanyl-tRNA synthetase beta chain; aminoacyl | 95.08 | |
| 1nnx_A | 109 | Protein YGIW; structural genomics, hypothetical pr | 95.07 | |
| 3kdf_D | 132 | Replication protein A 32 kDa subunit; wheat GERM c | 94.85 | |
| 3ig2_A | 213 | Phenylalanyl-tRNA synthetase beta chain; phers, MC | 94.68 | |
| 4gop_B | 136 | Putative uncharacterized protein; OB fold, ssDNA b | 94.35 | |
| 3au7_A | 402 | TIAS, putative uncharacterized protein; ATP hydrol | 93.78 | |
| 3ica_A | 213 | Phenylalanyl-tRNA synthetase beta chain; APC61692. | 93.67 | |
| 1jmc_A | 246 | Protein (replication protein A (RPA)); human ssDNA | 92.98 | |
| 1o7i_A | 119 | SSB, SSO2364, single stranded DNA binding protein; | 92.32 | |
| 2kbn_A | 109 | Conserved protein; nucleic acid binding protein, b | 91.91 | |
| 1b7y_B | 785 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 90.69 | |
| 3kdf_A | 121 | Replication protein A 14 kDa subunit; wheat GERM c | 90.34 | |
| 3kf8_A | 220 | Protein STN1; OB fold; 2.40A {Candida tropicalis m | 90.21 | |
| 2pi2_A | 270 | Replication protein A 32 kDa subunit; FULL-length | 89.9 | |
| 4gop_C | 444 | Putative uncharacterized protein; OB fold, ssDNA b | 89.43 | |
| 2hpi_A | 1220 | DNA polymerase III alpha subunit; POL-beta-like nu | 88.83 | |
| 2k75_A | 106 | Uncharacterized protein TA0387; closed beta barrel | 88.67 | |
| 1txy_A | 104 | Primosomal replication protein N; OB fold, dimer, | 88.02 | |
| 3fhw_A | 115 | Primosomal replication protein N; PRIB BPR162 X-RA | 86.26 | |
| 2vw9_A | 134 | Single-stranded DNA binding protein; DNA replicati | 85.79 | |
| 3vdy_A | 116 | SSB, single-stranded DNA-binding protein SSBB; OB | 85.51 | |
| 3tqy_A | 158 | Single-stranded DNA-binding protein; DNA replicati | 85.32 | |
| 4gop_A | 114 | Putative uncharacterized protein; OB fold, ssDNA b | 83.17 | |
| 2pi2_E | 142 | Replication protein A 14 kDa subunit; FULL-length | 82.08 |
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-123 Score=1007.17 Aligned_cols=486 Identities=47% Similarity=0.795 Sum_probs=435.3
Q ss_pred cccccCCCcCCcCccchhhhh--ccCCCCCCcccccccCcceEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEe
Q 008808 53 SIEEEGPLANNYGDVPLQELQ--SVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRE 130 (553)
Q Consensus 53 ~~~~~d~~~~~yg~~~~~~~~--~~~~pyphkf~~~~~~~~~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd 130 (553)
.++++|.++++||++|+.||+ + .++++|+.|++|...++|++|+|+|||+++|.+| |++|++|||
T Consensus 21 ~~~~~~~~~~~yg~~~~~~~~~~~------------~~~~~~~~i~~l~~~~~g~~V~v~Gwv~~~R~~g-kl~Fi~LrD 87 (548)
T 3i7f_A 21 LKTPELVSGENFKVMPMHQSQPCY------------KTGLKYTEIEELVPAMAEKTVTIRARVQAVRGKG-NMVFLFLRK 87 (548)
T ss_dssp CBCCCCCCCSSEEECCCCSSCGGG------------CCCCCBCCGGGCSGGGTTCEEEEEEEEEEEEECS-SEEEEEEEE
T ss_pred cccccchhhhhcCcCccccccccc------------cCCCceEEhhhcchhcCCCEEEEEEEEEEEecCC-CeEEEEEEE
Confidence 355678999999999999998 5 6788999999999899999999999999999999 999999999
Q ss_pred CCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCC-ceeEEEEEeEEEEeecCCCC-CCccccccc
Q 008808 131 RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA-TQQVEVQIKKLYCVSRAAKT-PITIEDASR 208 (553)
Q Consensus 131 ~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~-t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~ 208 (553)
++++||||++.+. .++++|++|++.|+.||+|.|+|+|++++.+++++ +|++||++++|+|||+|..+ |++++|+++
T Consensus 88 ~~g~iQ~v~~~~~-~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a~~~lP~~~~d~~~ 166 (548)
T 3i7f_A 88 GIYTCQALVMKSE-TISKEFVQFCQKISAESICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTF 166 (548)
T ss_dssp TTEEEEEEEECSS-SSCHHHHHHHHTCCTTEEEEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECCCBSCSSCSGGGSC
T ss_pred CCeeEEEEEECCC-ccCHHHHHHHhCCCCCCEEEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecCCCCCCCCchhccc
Confidence 9999999999753 36789999999999999999999999988777666 46799999999999999888 999999988
Q ss_pred cHHHHHHhh--------------------------------------hcCCCCCCCCccccccccceeeccHHhHHHHHH
Q 008808 209 SEAEIEKAS--------------------------------------KEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 250 (553)
Q Consensus 209 ~~~~~~~~~--------------------------------------~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~ 250 (553)
++.+.++.+ .....+..+++|+||+|||||||++.++++|++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~ 246 (548)
T 3i7f_A 167 PSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRI 246 (548)
T ss_dssp CHHHHHHHHHHTTCC-------------------------------CCCCCCCCCCCHHHHHTTHHHHTTSHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccCCHHHhhhchhhccCCHHHHHHHHH
Confidence 766543210 001234568999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCCC
Q 008808 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 330 (553)
Q Consensus 251 Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~ 330 (553)
||+|+++||+||.++||+||+||+|++++++|||++|.|+||+.++||+||||||||+||++|++||||||||||||+++
T Consensus 247 Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~egga~~F~v~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~ 326 (548)
T 3i7f_A 247 QSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSN 326 (548)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSBC-------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCC
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEecccCCCCcceeEEecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHHHHHHc
Q 008808 331 THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDA 410 (553)
Q Consensus 331 t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~~~ 410 (553)
|+|||||||||||||+|.++|+++|+++|+||++++..+.++|..+++.+...+++..+.+ .||+|++|.||+++|++.
T Consensus 327 t~RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~~~~~~~el~~~~~~~~~~~~~~-~pf~rit~~eai~~l~~~ 405 (548)
T 3i7f_A 327 TRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLIY-RPFLRLTYKEAIEMLRAS 405 (548)
T ss_dssp SSSCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCCCCC-CSCEEEEHHHHHHHHHHT
T ss_pred CCCcchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCcccccc-CCcceeEHHHHHHHHHHc
Confidence 9999999999999999987899999999999999999999889888888877888777776 799999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHH
Q 008808 411 GVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFL 490 (553)
Q Consensus 411 g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l 490 (553)
|++.++..|+++++|+.|+++|+++|+.++|||+|||.+++|||++++++||++++|||||++|+||+|||+|+|||++|
T Consensus 406 g~~~~~~~dl~~~~e~~l~~~i~~~~~~~~~~i~~yP~~~~pfYak~~~~dp~~~~rFDL~i~G~Ei~nG~~rl~Dp~~~ 485 (548)
T 3i7f_A 406 GETIGDYDDFTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFVRGQEITSGAQRIHDPEFL 485 (548)
T ss_dssp TCCCCTTCCCCHHHHHHHHHHHHHHHCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEECCCHHHH
T ss_pred CCCCCCccccchHHHHHHHHHHHHHcCCCeEEEecCccccCchhhccCCCCCCeEEEEEEEECCEEEeeCeeecCCHHHH
Confidence 99988889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 491 AERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 491 ~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
++||+++|++++.++|||+|++||||||||||||||||+|++||+.|||||++|||+|+||+|
T Consensus 486 ~~R~~~~G~d~~~~e~yl~al~yG~PPhgG~GlGiDRLvMlltg~~nIRdVi~FPR~p~rl~P 548 (548)
T 3i7f_A 486 MKRCIEKGVDPATLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRKVTLFPRDPIRLNP 548 (548)
T ss_dssp HHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSCCBTTBCCC
T ss_pred HHHHHHcCCChHHHHHHHHHHhCCCCCceEEEEcHHHHHHHHhCCccHHHhhcCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999998
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-114 Score=934.50 Aligned_cols=476 Identities=51% Similarity=0.845 Sum_probs=435.7
Q ss_pred cCCcCccchhhhh--ccCCCCCCcccccccCcceEEeccccCC-CCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEE
Q 008808 61 ANNYGDVPLQELQ--SVNDPQTGKWSEAVNGREWTVVGALNGS-LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQC 137 (553)
Q Consensus 61 ~~~yg~~~~~~~~--~~~~pyphkf~~~~~~~~~~~i~~l~~~-~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQv 137 (553)
+++||++++.|++ + .+..+++.|++|... +.|++|+|+|||+++|.+|+.|+|++|||+++.|||
T Consensus 2 ~~~yG~~~~~~s~~~~------------~~~~~~~~~~~l~~~~~~g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g~iQv 69 (487)
T 1eov_A 2 KDNYGKLPLIQSRDSD------------RTGQKRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQG 69 (487)
T ss_dssp CSSEEECCCCCCCGGG------------CCCCCCCCGGGCCTTTTTTCEEEEEEEEEEEEECSSSEEEEEEEETTEEEEE
T ss_pred Cccccccccccccccc------------ccccceeEHHHhcccccCCCEEEEEEEEEEeeccCCccEEEEEEECCccEEE
Confidence 4689999999986 5 456678889998876 899999999999999999944599999999999999
Q ss_pred EeecCCCC-cchHHHHHHhcCCCCceEEEEEEEecCCCccC-CCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHH
Q 008808 138 LATVKPDS-VSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK-GATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIE 214 (553)
Q Consensus 138 v~~~~~~~-~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~-~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~ 214 (553)
|++.+... ++++++++++.|+.||+|.|+|+|.+++.+.+ ..+|++||++++++|||+|.++ |++++|.++++.+.
T Consensus 70 v~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a~~~lP~~~~~~~~~~~~~- 148 (487)
T 1eov_A 70 LVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEA- 148 (487)
T ss_dssp EEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCCSSCSSCHHHHTSCHHHH-
T ss_pred EEeccccccccHHHHHHHhcCCCCCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecccccCCcchhhcccccccc-
Confidence 99875323 56788899999999999999999998875443 3457899999999999999987 99988765432110
Q ss_pred HhhhcCCCCCCCCccccccccceeeccHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCC
Q 008808 215 KASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQ 294 (553)
Q Consensus 215 ~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~ 294 (553)
....++.+++|+||+|||||||++.++++|++||+|++.+|+||.++||+||+||+|+.+++++||++|.++|+|+
T Consensus 149 ----~~~~~~~~~~e~r~~~R~LdLr~~~~~~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~~f~~~~~~~ 224 (487)
T 1eov_A 149 ----EAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKG 224 (487)
T ss_dssp ----HHTTCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEEEETTE
T ss_pred ----cccccccCChhhhhhcceeecCCHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecCCCCcccceeccCCc
Confidence 0123556899999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred ceecccChhhHhhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhH
Q 008808 295 SACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCK 374 (553)
Q Consensus 295 ~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~ 374 (553)
++||+||||||+|++|++|++||||||||||||+++++||+||||||||||+|.++|+|+|+++|+|++++++.+.++|.
T Consensus 225 ~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~l~~~v~~~~~ 304 (487)
T 1eov_A 225 KAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFA 304 (487)
T ss_dssp EEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred cEEcccChHHHHHHHHhcCCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhch
Confidence 99999999999999999999999999999999999899999999999999999877999999999999999999999999
Q ss_pred HHHHHhhhcCCCccccCCC--CCcccCHHHHHHHHHHcCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCC
Q 008808 375 KELEAVAKQYPFEPLKYKP--KTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRP 452 (553)
Q Consensus 375 ~~i~~~~~~~~~~~~~~~~--~~~~i~~~ea~~ll~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~p 452 (553)
.+++.+...++...+++.. ||++++|.||++++++.|++..+..|+.+..|+.|++++.+.++.+++||+|||.+++|
T Consensus 305 ~~l~~~~~~~~~~~~~~~~~~~~~ri~~~ea~~~l~~~g~~~~~~~d~~~~~e~~l~~~~~~~~~~~~~~v~dyP~~~~p 384 (487)
T 1eov_A 305 HEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRP 384 (487)
T ss_dssp HHHHHHHHHSCCCCCCCCTTCCCEEEEHHHHHHHHHHTTCCCCTTCCCCHHHHHHHHHHHHHHSCCSEEEEECCBGGGSC
T ss_pred hHHHhhhhhcCCcceecccCCCeeEEEHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHHhCCCCEEEECCccccCh
Confidence 8888887777777777766 89999999999999999998888889999999999999999999999999999999999
Q ss_pred CCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCChh--cHHHHHHHhhcCCCCcceeeecHHHHHH
Q 008808 453 FYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVK--TISTYIDSFRYGAPPHGGFGVGLERVVM 530 (553)
Q Consensus 453 fy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~--~~~~yl~a~~~G~pP~~G~GiGidRLvm 530 (553)
||+|++++||++++|||||++|+||+|||+|+|||++|++||++.|++++ .++|||+||+||+|||||||||||||+|
T Consensus 385 fy~~~~~~dp~~~~~fDL~~~G~Ei~~G~~rl~d~~~q~~r~~~~g~~~~~~~~~~yl~al~yG~PPhgG~glGiDRLvm 464 (487)
T 1eov_A 385 FYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVM 464 (487)
T ss_dssp TTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCCCCEEEEEEEHHHHHH
T ss_pred hhcCcCCCCCCeEEEEEEEeCCEEEEeeEEecCCHHHHHHHHHHcCCChhhhhHHHHHHHHhcCCCCCeEEEEhHHHHHH
Confidence 99999999999999999999999999999999999999999999999988 8899999999999999999999999999
Q ss_pred HHcCCCCccccccccCCCCCCCC
Q 008808 531 LFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 531 ~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
+|||++||||||+|||+|+||.|
T Consensus 465 ll~g~~~IRdVi~FPr~~~r~~p 487 (487)
T 1eov_A 465 FYLDLKNIRRASLFPRDPKRLRP 487 (487)
T ss_dssp HHTTCSSGGGGCSSCCBTTBCCC
T ss_pred HHcCCCcHHheeecCCCCCCCCC
Confidence 99999999999999999999998
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-112 Score=908.53 Aligned_cols=434 Identities=35% Similarity=0.590 Sum_probs=403.8
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
.+.|++|...++|++|+|+|||+++|.+| |++|++|||+++.||||++.+ .++++++++++.|+.||+|.|+|+|+.
T Consensus 4 t~~~~~l~~~~~g~~V~v~Gwv~~~R~~g-~~~Fi~LrD~~g~iQ~v~~~~--~~~~~~~~~~~~l~~~~~V~V~G~v~~ 80 (438)
T 3nem_A 4 THYSSEITEELNGQKVKVAGWVWEVKDLG-GIKFLWIRDRDGIVQITAPKK--KVDPELFKLIPKLRSEDVVAVEGVVNF 80 (438)
T ss_dssp SCCGGGCCGGGTTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEETT--TSCHHHHHHGGGCCTTCEEEEEEEEEE
T ss_pred EEEHHHcchhcCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCC--cCCHHHHHHHhcCCCCCEEEEEEEEEe
Confidence 36678888888999999999999999999 999999999999999999976 356778888999999999999999998
Q ss_pred CCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHH
Q 008808 172 PDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 250 (553)
Q Consensus 172 ~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~ 250 (553)
++. ..|++||+++++.+||+|..+ |+++++. ...+.|+|+++||||||++.++++|++
T Consensus 81 ~~~----~~~~~el~~~~i~vl~~~~~~lP~~~~~~-----------------~~~~~e~r~~~R~Ldlr~~~~~~~~~~ 139 (438)
T 3nem_A 81 TPK----AKLGFEILPEKIVVLNRAETPLPLDPTGK-----------------VKAELDTRLDNRFMDLRRPEVMAIFKI 139 (438)
T ss_dssp CTT----STTSEEEEEEEEEEEECBCSSCSSCTTSS-----------------SCCCHHHHHHTHHHHTTSHHHHHHHHH
T ss_pred CCC----CCCcEEEEEEEEEEEecCCCCCCCCcccc-----------------ccCCHHHHhhchHHHhcCHHHHHHHHH
Confidence 753 346899999999999999878 9877542 135789999999999999999999999
Q ss_pred HHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCCC
Q 008808 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 330 (553)
Q Consensus 251 Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~ 330 (553)
||+|++.||+||.++||+||+||+|+++++|||++.|.++|+|+++||+||||||||+||++|++||||||||||||+++
T Consensus 140 Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~eg~~~~f~~~~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~ 219 (438)
T 3nem_A 140 RSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHN 219 (438)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESSCSSCSSSCCEEEETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSC
T ss_pred HHHHHHHHHHHHHHCCcEEEeCCEEecCCCCCCccceeEeeCCccEEEecChHHHHHHHHhcCCCceEEEcceEECCCCC
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHHHHHHc
Q 008808 331 THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDA 410 (553)
Q Consensus 331 t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~~~ 410 (553)
++|||||||||||||+|.++|+|+|+++|+|++++++.+.+++..+++.++..+. .+..||+|+||.||+++|++.
T Consensus 220 t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v~~~~~~~l~~~~~~l~----~~~~pf~rity~eai~~l~~~ 295 (438)
T 3nem_A 220 TTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELE----EPKLPFPRVSYDKALEILGDL 295 (438)
T ss_dssp CTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCCCC----CCCSSCCEEEHHHHHHHHHHT
T ss_pred CcccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHhhcccccc----cCCCCceEEEHHHHHHHHHHc
Confidence 8999999999999999986699999999999999999999888877776654321 123589999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHH
Q 008808 411 GVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFL 490 (553)
Q Consensus 411 g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l 490 (553)
|+++.++.|+++++|+.|+..+++++...++||+|||.+++|||++++++||++++|||||++|+||+|||+|+|||++|
T Consensus 296 g~~~~~~~dl~~~~e~~l~~~~~~~~~~~p~fi~~yP~~~~pfy~k~~~~~p~~~~rfdL~~~G~Ei~nG~~el~d~~~l 375 (438)
T 3nem_A 296 GKEIPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYRGVEISSGGQREHRHDIL 375 (438)
T ss_dssp TCCCCTTSCCCHHHHHHHHHHHHHHHCCSEEEEESCBGGGSCTTBCBCTTSTTBBSEEEEEETTEEEEEEEEBCCCHHHH
T ss_pred CCCCCCCCCCCcHHHHHHHHHhhhhcCCCCEEEECCchhhCccccccCCCCCCceEEEEEEECCEEEEeCeeecCCHHHH
Confidence 99988889999999999999998888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 491 AERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 491 ~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
++||+++|++++.++|||+|++||+|||||||||||||+|++||++|||||++|||+|+||+|
T Consensus 376 ~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GlGidRLvm~l~g~~~Irdvi~FPr~~~rl~P 438 (438)
T 3nem_A 376 VEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPRDRRRLTP 438 (438)
T ss_dssp HHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSCCCSSCCCC
T ss_pred HHHHHHcCCChhHHHHHHHHHHcCCCCceEEEEhHHHHHHHHhCCCcHHHcccCCCCccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999998
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-107 Score=871.55 Aligned_cols=431 Identities=25% Similarity=0.421 Sum_probs=375.5
Q ss_pred cCcceEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEE
Q 008808 88 NGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIG 167 (553)
Q Consensus 88 ~~~~~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G 167 (553)
+..+++.|.++ ..+.|++|+|+|||+++|.+|++++|++|||+++.||||++.+. .++. . .+..|+.||+|.|+|
T Consensus 15 ~~~~~~~i~~~-~~~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~iQvv~~~~~--~~~~-~-~~~~l~~g~~V~V~G 89 (456)
T 3m4p_A 15 ETPIVCNIRDA-AGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKE--LCEP-E-KVKLLTRECSLEITG 89 (456)
T ss_dssp -CCCCEECCST-TCCCSSEEEEEEEEEEEECCSSSEEEEEEECSSCEEEEEEESTT--TTCH-H-HHTTCCTTCEEEEEE
T ss_pred CcceEEEhhhh-hhcCCCEEEEEEEEEEEecCCCceEEEEEEeCCccEEEEEeccc--chhh-H-HhhcCCCccEEEEEe
Confidence 34568899999 57899999999999999999978999999999999999998742 2222 1 345799999999999
Q ss_pred EEecCCCcc---CCCc-eeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccH
Q 008808 168 VVSVPDVEI---KGAT-QQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTL 242 (553)
Q Consensus 168 ~v~~~~~~~---~~~t-~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~ 242 (553)
+|.+++... +.+| |++||++++++||++|..+ |... ....++|+|+++||||||++
T Consensus 90 ~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~~~~~~~~-------------------~~~~~~e~r~~~R~LdlR~~ 150 (456)
T 3m4p_A 90 RLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENII-------------------NKDSSIPQKMQNRHIVIRSE 150 (456)
T ss_dssp EEECCCSSSCCCSCTTBCSSEEEEEEEEEEECCCGGGTTTS-------------------CTTCCHHHHHHTHHHHTTSH
T ss_pred EEEecCCcccCcccCCCCcEEEEEeEEEEEecCCCCCcccc-------------------cccCCHHHHhhchHHhhhcH
Confidence 998765422 1233 7899999999999999654 3211 12367899999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEec
Q 008808 243 ANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGP 322 (553)
Q Consensus 243 ~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~ 322 (553)
.++++|++||+|+++||+||+++||+||+||+|++++++||+++|.++|||+++||+||||||||++++ |++|||||||
T Consensus 151 ~~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~eGg~~~f~~~~~~~~~~L~~SpqL~lq~l~~-g~~rVyeig~ 229 (456)
T 3m4p_A 151 HTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLFKLQYFNEPAYLTQSSQLYLESVIA-SLGKSFCMLS 229 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEC------CCCCEEEETTEEEEECSCCHHHHHTTHH-HHSSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCCCCccccccccccCCCcccccCHHHHHHHHHh-ccCcEEEEEh
Confidence 999999999999999999999999999999999988899999999999999999999999999999886 5999999999
Q ss_pred eecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHH
Q 008808 323 VFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEE 402 (553)
Q Consensus 323 ~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~e 402 (553)
|||||+++|+|||||||||||||+|. +|+|+|+++|+||+++++.+.+++...++.+...+. ....||+|++|.|
T Consensus 230 ~FR~E~~~t~rH~pEFtmlE~e~af~-d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~----~~~~pf~rity~e 304 (456)
T 3m4p_A 230 SYRAEQSRTVRHLAEYLHLEAELPFI-SFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPHLK----LPTRPFKRMTYAD 304 (456)
T ss_dssp EECCCSCCCSSCCSEEEEEEEEEESC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCC----CCCSSCEEEEHHH
T ss_pred heecCCCCCCcchHHHHHhHHHHhcC-CHHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCcccc----cCCCCCeEeeHHH
Confidence 99999998999999999999999998 699999999999999999998887766655432211 1235899999999
Q ss_pred HHHHHHHcCCCC-----CCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCC-EE
Q 008808 403 GVQMLKDAGVEI-----DPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRG-EE 476 (553)
Q Consensus 403 a~~ll~~~g~~~-----~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G-~E 476 (553)
|+++|++.|++. .++.|+++++|+.|+.. ++.| +||+|||.+++|||++++++||++++|||||++| +|
T Consensus 305 Ai~~l~~~g~~~~~~~~~~g~~l~~~~e~~l~~~----~~~P-~fv~~yP~~~~pfy~k~~~~dp~~~~rfdL~~~G~gE 379 (456)
T 3m4p_A 305 AIKYCNDHGILNKDKPFEYGEDISEKPERQMTDE----IGCP-IFMIHFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGE 379 (456)
T ss_dssp HHHHHHHHTCCSSSSCCCTTCCCCHHHHHHHHHH----HTSC-EEEECCBGGGSCTTBCEETTEEEEECEEEEEETTTEE
T ss_pred HHHHHHHcCCCccccCcchHHHHHHHHHHHHHHH----hCce-EEEECCCchhCccccccCCCCCCeeEEEEEEeCCceE
Confidence 999999998753 35678999999988754 4555 5678999999999999999999999999999999 69
Q ss_pred EeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 477 IISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 477 i~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
|+|||+|+|||++|++||++.|++++.++|||++++||+|||||||||||||+|++||++|||||++|||+|+||.|
T Consensus 380 i~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yld~~~~G~pP~gG~GlGidRLvm~ltg~~~Irdvi~FPr~~~r~~P 456 (456)
T 3m4p_A 380 IVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVCLYPRYLERCEP 456 (456)
T ss_dssp EEEEEEBCCCHHHHHHHHHTTTCCCGGGHHHHGGGTSSCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCBBTTBCCC
T ss_pred EccceeecCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCcccEEEEcHHHHHHHHcCCccHHHeeccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998
|
| >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-106 Score=883.58 Aligned_cols=444 Identities=21% Similarity=0.320 Sum_probs=373.7
Q ss_pred cCCCCCCcccccccCcce-EEecccc--CCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcch-HH
Q 008808 75 VNDPQTGKWSEAVNGREW-TVVGALN--GSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSK-EM 150 (553)
Q Consensus 75 ~~~pyphkf~~~~~~~~~-~~i~~l~--~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~-~~ 150 (553)
|.|||||+|.++++..++ .++.++. +...|++|+|+|||+++|.+|+|++|++|||++++||||++.+.. .++ .+
T Consensus 23 g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gkk~~F~~LrD~sg~iQvv~~~~~~-~~~~~~ 101 (521)
T 3bju_A 23 GEDPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY-KSEEEF 101 (521)
T ss_dssp TCCSSCSCCCCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSSSEEEEEEEETTEEEEEEEEGGGS-SCHHHH
T ss_pred CCCCCCCcCcCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCCCcEEEEEEECCEEEEEEEECCcc-CCHHHH
Confidence 789999999999887654 3444443 345689999999999999999899999999999999999987531 133 34
Q ss_pred HHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCcc
Q 008808 151 VRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQD 229 (553)
Q Consensus 151 ~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e 229 (553)
.++.+.|+.||+|.|+|+|.+++ +|++||++++|.+||+|+.+ |++.. +..+++
T Consensus 102 ~~~~~~l~~gd~V~V~G~v~~t~------~ge~ei~~~~i~~l~~~~~~lP~~~~-------------------~~~~~e 156 (521)
T 3bju_A 102 IHINNKLRRGDIIGVQGNPGKTK------KGELSIIPYEITLLSPCLHMLPHLHF-------------------GLKDKE 156 (521)
T ss_dssp HHHHHHCCTTCEEEEEEEEEECT------TCCEEEEEEEEEEEECCCSCCCCC-----------------------CCHH
T ss_pred HHHHhcCCCCCEEEEEEEEEecC------CCCEEEEEeEEEEeecCCCCCCCccc-------------------cccChh
Confidence 44667899999999999999875 46899999999999999888 86432 236899
Q ss_pred ccccccceeec-cHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee--cCCCCceecccChhhHh
Q 008808 230 TRLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHK 306 (553)
Q Consensus 230 ~Rl~~R~LdLr-~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~SPql~l 306 (553)
+|+++|||||| ++.++++|++||+|+++||+||.++||+||+||+|++++++++|++|.| ++||+++||+|||||||
T Consensus 157 ~r~r~RyLdLr~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~t~~~~~~~~~yL~~SpqL~l 236 (521)
T 3bju_A 157 TRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYH 236 (521)
T ss_dssp HHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCEEEETTTTEEEEECSCSHHHH
T ss_pred hhhhhhhhhHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCceeeccCCCccccceeeecccCCcceEeeCCHHHHH
Confidence 99999999999 5999999999999999999999999999999999997554444689987 78999999999999999
Q ss_pred hhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCC
Q 008808 307 QMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPF 386 (553)
Q Consensus 307 k~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~ 386 (553)
|+||+||++||||||||||||++++ |||||||||||||+|+ ||+|+|+++|+||+++++.+.+++...+.....+.+.
T Consensus 237 k~liv~g~~rVyeig~~FR~E~~~t-rH~pEFtmlE~e~af~-d~~dlm~l~E~li~~v~~~v~~~~~~~~~~~~~d~~~ 314 (521)
T 3bju_A 237 KMLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCEFYMAYA-DYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQA 314 (521)
T ss_dssp HHHHHTTCCEEEEEEEEECCSCCBT-TBCSEEEEEEEEEETC-CHHHHHHHHHHHHHHHHHHHHSSSEEEECTTCTTSCC
T ss_pred HHHHhcCcCceEEEEcceeCCCCCC-ccchhhhhhhhhhhcC-CHHHHHHHHHHHHHHHHHHHhCCceEEeccccccccc
Confidence 9999999999999999999999965 9999999999999998 7999999999999999999987664332211112223
Q ss_pred ccccCCCCCcccCHHHHHHHHHHcCCCCCCCCCCCcH--------------------------HHHHHhHHHHHHhCCcc
Q 008808 387 EPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTE--------------------------SERKLGQLVLEKYGTEF 440 (553)
Q Consensus 387 ~~~~~~~~~~~i~~~ea~~ll~~~g~~~~~~~dl~~~--------------------------~e~~l~~~v~~~~~~~~ 440 (553)
..+++..||+|++|.||++.+. |+++.+..|+++. ..+.++++|++++..|
T Consensus 315 ~~~d~~~pf~rit~~eai~~~~--g~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~~ve~~l~~P- 391 (521)
T 3bju_A 315 YDVDFTPPFRRINMVEELEKAL--GMKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINP- 391 (521)
T ss_dssp EEEECCSSCEEEEHHHHHHHHH--TSCCCCGGGTTSHHHHHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHTGGGCCSC-
T ss_pred ceeccCCCcccccHHHHHHHHh--CCCCCccccCCcHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhcCCc-
Confidence 3567778999999999998654 5555443344332 1233445556666654
Q ss_pred EEEeccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHHc------CCChhc--HHHHHHHhh
Q 008808 441 YILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQAC------GIDVKT--ISTYIDSFR 512 (553)
Q Consensus 441 ~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~------g~~~~~--~~~yl~a~~ 512 (553)
+||+|||..++|| +|++++||++++|||||++|+||||||+|+|||+.|++||+++ |.+++. ++|||+|++
T Consensus 392 ~fI~dyP~~~spl-a~~~~~dp~~~~rfdL~i~G~Ei~ng~~el~Dp~~qr~rf~~q~~~~~~g~~e~~~~d~~yl~al~ 470 (521)
T 3bju_A 392 TFICDHPQIMSPL-AKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALE 470 (521)
T ss_dssp EEEECCBGGGCTT-BCBCSSSTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHHTCTTSCCCCHHHHHHHT
T ss_pred EEEECCccccCcc-cccCCCCCCeeeeEEEEEcceeeecChhhhCCHHHHHHHHHHHHHHHhcCCChhhcchHHHHHHHh
Confidence 5678999999999 7899999999999999999999999999999999999999754 888765 699999999
Q ss_pred cCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCC
Q 008808 513 YGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLR 550 (553)
Q Consensus 513 ~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~r 550 (553)
||||||||||||||||||+|||++||||||+|||++..
T Consensus 471 yG~PP~gG~GlGiDRLvMlltg~~~IRdVi~FP~~~~~ 508 (521)
T 3bju_A 471 YGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPE 508 (521)
T ss_dssp TTCCSEEEEEEEHHHHHHHHTTCSSGGGSCSSCCCCCC
T ss_pred cCCCCceeEEEcHHHHHHHHhCCCcHHhEecCCCCCCc
Confidence 99999999999999999999999999999999998864
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-105 Score=864.66 Aligned_cols=447 Identities=25% Similarity=0.364 Sum_probs=372.0
Q ss_pred CcCCcCccchhhhhc----cCCCCCCcccccccCcce-EEeccccC---CCCCCEEEEEEEEeeeccCCCceEEEEEEeC
Q 008808 60 LANNYGDVPLQELQS----VNDPQTGKWSEAVNGREW-TVVGALNG---SLKDQEVLIRGRVHTTRPVGNKLAFVVVRER 131 (553)
Q Consensus 60 ~~~~yg~~~~~~~~~----~~~pyphkf~~~~~~~~~-~~i~~l~~---~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~ 131 (553)
+++.|-..|...++. |. ||||+|.++++..+. .++.++.. ...|++|+|+|||+++|.+| |++|++|||+
T Consensus 35 ~~~~~~~~r~~k~~~l~~~g~-~yp~~~~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~R~~G-k~~Fi~LrD~ 112 (529)
T 4ex5_A 35 DENQIVAERRDKLRALRDQGI-AYPNDFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMG-KASFATVQDG 112 (529)
T ss_dssp -CHHHHHHHHHHHHHHHHTSC-SSCCCCCCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEECS
T ss_pred ChHHHHHHHHHHHHHHHHcCC-CCCCCCcCceEHHHHHHHhhccCccccccCCcEEEEEEEEEeeecCC-CeEEEEEEeC
Confidence 344555555544433 44 999999999876443 22333321 12389999999999999999 8999999999
Q ss_pred CeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccH
Q 008808 132 VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSE 210 (553)
Q Consensus 132 ~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~ 210 (553)
++.||||++.+ .++++++++++.|+.||+|.|+|+|.+++ +|++||++++|.+||+|+.+ |++..+
T Consensus 113 sg~iQvv~~~~--~~~~~~~~~~~~l~~gd~V~V~G~v~~t~------~gelel~~~~i~vLs~a~~plP~k~~~----- 179 (529)
T 4ex5_A 113 SGQIQFFVTPA--DVGAETYDAFKKWDLGDIVAARGVLFRTN------KGELSVKCTQLRLLAKALRPLPDKFHG----- 179 (529)
T ss_dssp SCEEEEEECHH--HHCHHHHHHHHTCCTTCEEEEEEEEEECT------TSCEEEEEEEEEEEECCSSCCCC---------
T ss_pred CeeEEEEEECC--cCCHHHHHHHhcCCCCCEEEEEEEEEEcC------CCcEEEEEEEEEEEecCCCCCCccccC-----
Confidence 99999999875 34566778888999999999999998764 46899999999999999877 875432
Q ss_pred HHHHHhhhcCCCCCCCCccccccccceeec-cHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCc--cce
Q 008808 211 AEIEKASKEGVQLPRVNQDTRLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS--AVF 287 (553)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr-~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga--~~F 287 (553)
..++|+||++|||||| ++.++++|++||+|+++||+||+++||+||+||+|++. +||| .+|
T Consensus 180 --------------l~d~e~r~r~RyLdLr~~~~~~~~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~--~gGA~a~pF 243 (529)
T 4ex5_A 180 --------------LADQETRYRQRYVDLIVTPETRTTFRARTKAIASIRKFMGDADFMEVETPMLHPI--PGGAAAKPF 243 (529)
T ss_dssp ----------------CTTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESS--CCSSSSCCC
T ss_pred --------------CcChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeeecc--CCCCccccc
Confidence 3578999999999998 69999999999999999999999999999999999864 4555 689
Q ss_pred ee--cCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHH
Q 008808 288 RL--DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365 (553)
Q Consensus 288 ~v--~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i 365 (553)
.+ ++|+.++||+||||||||+||+||++||||||||||||++ +.|||||||||||||+|. ||+|+|+++|+||+++
T Consensus 244 ~t~~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~-~~rH~pEFtmlE~e~af~-d~~dlm~l~E~li~~v 321 (529)
T 4ex5_A 244 VTHHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGV-SPRHNPEFTMMEFYAAYT-DYRWLMDFTERLIRQA 321 (529)
T ss_dssp EEEETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEEECCSCC-BTTBCSEEEEEEEEEETC-CHHHHHHHHHHHHHHH
T ss_pred ccccccCCcceecccCHHHHHHHHHhcCCCcEEEeehheecCCC-CCCcccHhHhhhhhhhcC-CHHHHHHHHHHHHHHH
Confidence 75 6899999999999999999999999999999999999998 479999999999999998 6999999999999999
Q ss_pred HHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHHHHH-------------------HcCCCCCC----CCCCCc
Q 008808 366 FDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLK-------------------DAGVEIDP----LGDLNT 422 (553)
Q Consensus 366 ~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~-------------------~~g~~~~~----~~dl~~ 422 (553)
++.+.+++.. .+....+++..||+||||.||++.+. +.|+++++ ..++..
T Consensus 322 ~~~v~~~~~~-------~~~~~~id~~~pf~Rity~eAi~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~g~ 394 (529)
T 4ex5_A 322 AVDALGTATI-------QYQGRELDLAQPFHRLTITQAIQKYAPSYTDGQLSDDAFLRSELKRLGVDVTQPAFLNAGIGA 394 (529)
T ss_dssp HHHHHSCSEE-------EETTEEEETTSCCEEEEHHHHHHHHCTTSCHHHHTCHHHHHHHHHHTTCCTTSGGGTTCCHHH
T ss_pred HHHHhCcCce-------ecCceeeccCCCceEEEHHHHHHHHhCCCChhhcCCHHHHHHHHHHcCCCCCCcccCCCCHHH
Confidence 9999875431 23334567788999999999997542 34555444 223334
Q ss_pred HHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH------
Q 008808 423 ESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA------ 496 (553)
Q Consensus 423 ~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~------ 496 (553)
.....++.+++++++.|+| |+|||.+++||| +++++||++++|||||++|+||||||+|+|||++|++||.+
T Consensus 395 l~~e~~~~~vE~~l~~P~F-I~dyP~~~spla-k~~~~~p~~~~rFeL~i~G~EianG~~el~Dp~~q~~rf~~q~~~~~ 472 (529)
T 4ex5_A 395 LQLALFEETAEAQLWEPTF-IIDYPIEVSPLA-RESDTVAGITERFELFITGREIANGFSELNDPEDQAARFKKQVEQKD 472 (529)
T ss_dssp HHHHHHHHHTGGGCCSCEE-EEEEEGGGCTTB-CBCSSSTTEEEEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCEE-EECCchhhCCCc-ccCCCCCCceEEEEEEECCEEEecchhccCCHHHHHHHHHHHHHHHh
Confidence 4556667777788887655 678999999995 88999999999999999999999999999999999999863
Q ss_pred cCCChhc--HHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCC
Q 008808 497 CGIDVKT--ISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDP 548 (553)
Q Consensus 497 ~g~~~~~--~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p 548 (553)
.|.+++. ++|||+|++||||||||||||||||||+|||++|||||++||+..
T Consensus 473 ~gd~ea~~~De~yl~aleyG~PP~gG~GlGiDRLvMlltg~~~IRdVi~FP~~r 526 (529)
T 4ex5_A 473 AGDEEAMFFDADYIRALEYGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFPHLR 526 (529)
T ss_dssp TTCTTSCCCCHHHHHHHHTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSCCCC
T ss_pred cCCcccccchHHHHHHHHcCCCCCcEEEEeHHHHHHHHcCCCcHHHeecCCccC
Confidence 4656554 499999999999999999999999999999999999999999864
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-104 Score=843.42 Aligned_cols=424 Identities=33% Similarity=0.587 Sum_probs=386.6
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
+.|+++...+.|++|+|+|||+++|.+| |++|++|||+++.||||++.+. +++++++.|+.||+|.|+|+|.++
T Consensus 5 ~~~~~l~~~~~~~~V~v~Gwv~~~R~~g-~~~F~~lrD~~g~iQ~v~~~~~-----~~~~~~~~l~~~~~v~v~G~v~~~ 78 (429)
T 1wyd_A 5 HFIADVTPEYDGKEVIWAGWVHLLRDLG-GKKFIILRDKTGLGQVVVDKNS-----SAFGISQELTQESVIQVRGIVKAD 78 (429)
T ss_dssp SCTTTCCGGGTTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEECTTS-----TTHHHHTTCCTTCEEEEEEEEEEC
T ss_pred EEHHHhhHHhCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCCh-----HHHHHHHhCCCCCEEEEEEEEEec
Confidence 4467777678999999999999999999 8999999999999999998652 346677899999999999999988
Q ss_pred CCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHHH
Q 008808 173 DVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQ 251 (553)
Q Consensus 173 ~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~R 251 (553)
+. .+|++||+++++.+||+|.++ |+++++. ...+.|+|+++||||||++.++++|++|
T Consensus 79 ~~----~~~~~el~~~~~~vl~~~~~~~P~~~~~~-----------------~~~~~e~r~~~R~Ldlr~~~~~~~~~~r 137 (429)
T 1wyd_A 79 KR----APRGIELHAEEITLLSKAKAPLPLDVSGK-----------------VKADIDTRLRERVLDLRRQEMQAVIKIQ 137 (429)
T ss_dssp SS----SGGGEEEEEEEEEEEECCCSSCSSCSSSC-----------------CCCCHHHHHHTHHHHHTSHHHHHHHHHH
T ss_pred CC----CCccEEEEEeEEEEeccCCCCCCCCcccc-----------------ccCChhHhhhccceeccCHHHHHHHHHH
Confidence 63 357899999999999999777 9866431 1257899999999999999999999999
Q ss_pred HHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCCCC
Q 008808 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYT 331 (553)
Q Consensus 252 s~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~t 331 (553)
|+|++.+|+||.++||+||+||+|+.++++|++++|.++|+|.++||+||||+|+|+ +++|++|||+||||||||++++
T Consensus 138 s~i~~~ir~ff~~~gF~eV~TP~l~~~~~e~~~~~f~~~~~~~~~~L~~Spql~~~~-~~~g~~rvf~ig~~FR~E~~~~ 216 (429)
T 1wyd_A 138 SLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIYFGKEAFLAQSPQLYKEL-MAGVVERVFEVAPAWRAEESDT 216 (429)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCSSTTCCCCEEEETTEEEEECSCCHHHHHH-HHHHHSEEEEEEEEECCCCCCS
T ss_pred HHHHHHHHHHHhhCCCEEEECCEEEeeCCCCCceeEEEecCCceEEecCCcHHHHHH-HHhCcCceEEEcccccccCCcc
Confidence 999999999999999999999999988889888999999999999999999999999 7788999999999999999988
Q ss_pred CCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHHHHHHcC
Q 008808 332 HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAG 411 (553)
Q Consensus 332 ~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~~~g 411 (553)
.||+||||||||||+|. +++|+|+++|+|++++++.+.++|..+++.++..++. +..||+|++|.||++++++.|
T Consensus 217 ~RH~pEFtqle~e~~~~-~~~dlm~~~e~ll~~l~~~~~~~~~~~l~~~~~~~~~----l~~pf~rity~eA~~~~~~~g 291 (429)
T 1wyd_A 217 PFHLAEFISMDVEMAFA-DYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPPE----VKIPIKRLKYTEAIEILRSKG 291 (429)
T ss_dssp SSCCSEEEEEEEEEETC-CHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCCCCC----CCSSCEEEEHHHHHHHHHHSS
T ss_pred ccccceeeEeeeeecCC-CHHHHHHHHHHHHHHHHHHHhccchhhhhhccccccc----CCCCccEEEHHHHHHHHHhcC
Confidence 89999999999999998 6999999999999999999998888888766543332 246899999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHH
Q 008808 412 VEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLA 491 (553)
Q Consensus 412 ~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~ 491 (553)
++..+..|++++.|+.|++.+ ...++||+|||..++|||++++++||+++++||||++|.||+|||+|+|||++|+
T Consensus 292 ~~~~~~~~l~~~~e~~l~~~~----~~~p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~G~Ei~~G~~r~~d~~~q~ 367 (429)
T 1wyd_A 292 YNIKFGDDIGTPELRILNEEL----KEDLYFIVDWPSDARPFYTKSKSENPELSESFDLIYKFLEIVSGSTRNHKREVLE 367 (429)
T ss_dssp CCCCTTSCCCHHHHHHHHHHH----CCSEEEEECCBGGGSCTTBCBCCC-CCBBSEEEEEETTEEEEEEEEBCCCHHHHH
T ss_pred CCcccCcccCcHHHHHHHHHh----ccCCEEEecCChhhChhhCCcCCCCCCeEEEEEEEECCEEEEeCeeeeCCHHHHH
Confidence 888888889999999888655 3357888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 492 ERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 492 ~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
+||+++|++++.++|||+|++||+|||||||||||||+|++||++||||||+|||+++||.|
T Consensus 368 ~rf~~~g~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdvi~FP~~~~~~~p 429 (429)
T 1wyd_A 368 EALKKKGLKPESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPFPRDKKRLTP 429 (429)
T ss_dssp HHHHHTTCCGGGGHHHHGGGGSCCCCEEEEEEEHHHHHHHHHCCCCGGGTSSSCCBTTBCCC
T ss_pred HHHHHcCCChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhEEecCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-103 Score=844.97 Aligned_cols=422 Identities=27% Similarity=0.451 Sum_probs=364.4
Q ss_pred EeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCC
Q 008808 94 VVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 173 (553)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~ 173 (553)
+|+++. .+.|++|+|+|||+++|.+|++++|++|||+++.||||++.+ .++. ++. ..|+.||+|.|+|+|.+++
T Consensus 2 ~i~~~~-~~~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~iQvv~~~~---~~~~-~~~-~~l~~~~~v~v~G~v~~~~ 75 (435)
T 2xgt_A 2 KIRDLV-KHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDK---LCQT-YDA-LTVNTECTVEIYGAIKEVP 75 (435)
T ss_dssp CGGGGG-GGTTSEEEEEEEEEEEEECTTSEEEEEEECSSCEEEEEEEGG---GGSS-HHH-HHCCTTCEEEEEEEEEECC
T ss_pred chhhhh-hcCCCEEEEEEEEEEecccCCCcEEEEEEECCceEEEEECCc---chhH-HHH-hcCCCCCEEEEEEEEEecC
Confidence 355663 578999999999999999987899999999999999999843 2222 222 2699999999999998865
Q ss_pred CccCCCceeEEEEEeEEEEeecCCCC---CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHH
Q 008808 174 VEIKGATQQVEVQIKKLYCVSRAAKT---PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 250 (553)
Q Consensus 174 ~~~~~~t~~~Ei~v~~i~~ls~~~~~---P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~ 250 (553)
.. +..+|++||+++++.+|+++.+. |+.. . ..+.|+|+++||||||++.++++|++
T Consensus 76 ~~-~~~~g~~El~~~~~~vl~~~~p~~~~pl~~------------------~--~~~~e~r~~~R~Ldlr~~~~~~~~r~ 134 (435)
T 2xgt_A 76 EG-KEAPNGHELIADFWKIIGNAPPGGIDNVLN------------------E--EASVDKMLDNRHLVIRGENAAALLRL 134 (435)
T ss_dssp -------TTEEEEEEEEEEEECCCTTHHHHHCC----------------------CCHHHHHHTHHHHTTSHHHHHHHHH
T ss_pred CC-cCCCCcEEEEEEEEEEeecCCCcccccccc------------------c--CCCHHHHhhCeeeeecCHHHHHHHHH
Confidence 32 24567899999999999986331 2211 0 36889999999999999999999999
Q ss_pred HHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCCC
Q 008808 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 330 (553)
Q Consensus 251 Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~ 330 (553)
||+|+++||+||+++||+||+||+|+.++++||+++|.++|+|+++||+||||||||++|+ |++||||||||||||+++
T Consensus 135 Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~eG~~~~F~~~~~g~~~~L~~SpqLylq~l~~-g~~rvfeIg~~FR~E~~~ 213 (435)
T 2xgt_A 135 RAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLDYFGEQSFLTQSSQLYLETCIP-TLGDVFCIAQSYRAEKSR 213 (435)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESCCSSCTTSCCEEEETTEEEEECSCSHHHHHHHHH-HHCSEEEEEEEECCCSSC
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeEeeccCCCchhceeeccCCcccccCCChHHHHHHhhh-ccCceEEEecceecCCCC
Confidence 9999999999999999999999999988899999999999999999999999999999885 699999999999999998
Q ss_pred CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHH--HHHhhhcCCCccccCCCCCcccCHHHHHHHHH
Q 008808 331 THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKE--LEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLK 408 (553)
Q Consensus 331 t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~--i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~ 408 (553)
++|||||||||||||+|. ||+|+|+++|+|++++++.+.+.+... ++.+...+. ....||+|+||.||+++++
T Consensus 214 t~RH~~EFT~lE~e~af~-d~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~pf~rity~ea~~~~~ 288 (435)
T 2xgt_A 214 TRRHLAEYAHVEAECPFI-TLDDLMEKIEELVCDTVDRLLADEEAKKLLEHINPKFQ----PPERPFLRMEYKDAIKWLQ 288 (435)
T ss_dssp CTTCCSEEEEEEEEEESC-CHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHSTTCC----CCCSSCEEEEHHHHHHHHH
T ss_pred ccccccceeEEEEEEecC-CHHHHHHHHHHHHHHHHHHHhccccchhhhhhcccccc----ccCCCceEEEHHHHHHHHH
Confidence 899999999999999998 699999999999999999987765432 332221110 1125899999999999999
Q ss_pred HcCCC------CCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCC-EEEeece
Q 008808 409 DAGVE------IDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRG-EEIISGA 481 (553)
Q Consensus 409 ~~g~~------~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G-~Ei~~G~ 481 (553)
..|+. ..++.++....|+.|...+ .. ++||+|||.+++|||++++++||++++|||||++| +||+|||
T Consensus 289 ~~~~~~~~~~~~~~g~~l~~~~e~~l~~~~----~~-p~fv~d~P~~~~~f~a~~~~~~p~~~~~fdl~~~G~~Ei~~G~ 363 (435)
T 2xgt_A 289 EHNVENEFGNTFTYGEDIAEAAERFMTDTI----NK-PILLNRFPSEIKAFYMQRDAQDNTLTESVDLLMPGVGEIVGGS 363 (435)
T ss_dssp HTTCBCTTSCBCCTTSCCCHHHHHHHHHHH----TS-CEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTTEEEEEEE
T ss_pred hcCCCcccccccchhhHHHHHHHHHHHHhc----CC-cEEEECCChhhCcccCCCCCCCcCeEEEEEEEcCCceEEEeee
Confidence 88765 2345678888898886544 33 57788999999999999999999999999999999 6999999
Q ss_pred eccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 482 QRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 482 ~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
+|+|||++|++||++.|++++.++|||+|++||+|||||||||||||+|++||++||||||+|||+|+||.|
T Consensus 364 ~r~~d~~~q~~r~~~~g~~~~~~~~yl~a~~yG~pPhgG~glGiDRLvmll~g~~~Irdvi~FPr~~~~~~p 435 (435)
T 2xgt_A 364 MRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVGRCVP 435 (435)
T ss_dssp EBCCCHHHHHHHHHHHTCCCGGGHHHHHHHHSSCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCCBTTBCCC
T ss_pred EEeCCHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCceEEEhHHHHHHHHcCCCcHHhEecccCCcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-103 Score=834.97 Aligned_cols=418 Identities=37% Similarity=0.593 Sum_probs=325.1
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCC-CCceEEEEEEEe
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLS-NESIVDVIGVVS 170 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~-~esiV~V~G~v~ 170 (553)
|+.|++|. .+.|++|+|+|||+++|.+| |++|++|||+++.||||++. +.|+ .||+|.|+|+|.
T Consensus 2 ~~~~~~l~-~~~~~~V~v~Gwv~~~R~~g-~~~F~~lrD~~g~iQ~v~~~-------------~~l~~~~~~v~v~G~v~ 66 (422)
T 1n9w_A 2 RVLVRDLK-AHVGQEVELLGFLHWRRDLG-RIQFLLLRDRSGVVQVVTGG-------------LKLPLPESALRVRGLVV 66 (422)
T ss_dssp BCCGGGGG-GCTTSEEEEEEEEEEEEECS-SEEEEEEEETTEEEEEEEES-------------CCCCCTTCEEEEEEEEE
T ss_pred eEEHHHHH-hcCCCEEEEEEEEEEEecCC-CeEEEEEEECCEEEEEEEEc-------------cccCCCCCEEEEEEEEE
Confidence 35677777 78899999999999999999 89999999999999999975 3699 999999999999
Q ss_pred cCCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHH
Q 008808 171 VPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (553)
Q Consensus 171 ~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~ 249 (553)
+++. .+|++||+++++.+||+|..+ |++.++. .+..+.|+|+++||||||++.++++|+
T Consensus 67 ~~~~----~~~~~el~~~~~~vl~~~~~~~P~~~~~~----------------~~~~~~e~r~~~R~Ldlr~~~~~~~~~ 126 (422)
T 1n9w_A 67 ENAK----APGGLEVQAKEVEVLSPALEPTPVEIPKE----------------EWRANPDTLLEYRYVTLRGEKARAPLK 126 (422)
T ss_dssp ECTT----STTSEEEEEEEEEEEECCCSCCC---------------------------------CHHHHTTSHHHHHHHH
T ss_pred ecCC----CCccEEEEEeEEEEeccCCcCCCCCcccc----------------ccCCCHHHHhhhhHHhhcCHHHHHHHH
Confidence 8863 356899999999999999877 9866431 023578999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCC
Q 008808 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDS 329 (553)
Q Consensus 250 ~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~ 329 (553)
+||+|++.+|+||.++||+||+||+|+.++++|++++|.++|+|.++||+||||+|+|+++ +|++|||+||||||||++
T Consensus 127 ~rs~i~~~ir~~f~~~gF~EV~TPil~~~~~e~~~~~f~~~~~g~~~~L~~Spel~~~~l~-~g~~rvf~ig~~FR~E~~ 205 (422)
T 1n9w_A 127 VQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEKRAYLAQSPQLYKQIMV-GVFERVYEVAPVWRMEEH 205 (422)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCC----------------------------CHHHHHHHH-HHHSEEEEEEEC------
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCEEEEeCCCCCceeEEEeeCCCcEEeeeCHHHHHHHHh-hCCCceeEEeCceECCCC
Confidence 9999999999999999999999999998888888889999999999999999999999987 779999999999999999
Q ss_pred CCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCC-CCCcccCHHHHHHHHH
Q 008808 330 YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYK-PKTLRLTFEEGVQMLK 408 (553)
Q Consensus 330 ~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~ea~~ll~ 408 (553)
++.||+||||||||||+|.++|+|+|+++|+|++++++.+.+++..+++.++..++ +. .||+|+||.||+++++
T Consensus 206 ~~~RH~pEFtqle~e~~~~~d~~dlm~l~e~ll~~l~~~~~~~~~~~i~~~~~~~~-----~~~~pf~rity~eA~~~~~ 280 (422)
T 1n9w_A 206 HTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWP-----SFPQDIPRLTHAEAKRILK 280 (422)
T ss_dssp -------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCCC-----CCSSSCCEEEHHHHHHHHH
T ss_pred CCCcccceeEEeeeeeeCCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcCcccc-----ccCCCcceeEHHHHHHHHH
Confidence 88899999999999999986799999999999999999999888888876654333 22 5899999999999998
Q ss_pred HcCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHH
Q 008808 409 DAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPE 488 (553)
Q Consensus 409 ~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~ 488 (553)
+.| +..+..|+.++.|+.|++.+.++++..++||+|||..++|||++++++ ++++|||||++|.||+|||+|+|||+
T Consensus 281 ~~~-~~~~~~dl~~~~e~~l~~~~~~~~~~~p~fv~d~P~~~~pf~~~~~~d--~~~~~fDL~~~G~Ei~~G~~r~~d~~ 357 (422)
T 1n9w_A 281 EEL-GYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEED--GTTRSFDLLFRGLEITSGGQRIHRYE 357 (422)
T ss_dssp HTS-CCCCCSSCCHHHHHHHHHHHHHHTCCSEEEEECCBGGGSCTTBCBCTT--SBBSEEEEEETTEEEEEEEEBCCCHH
T ss_pred hcC-CcccccccCcHHHHHHHHHHHhhhCCceEEEECCChhhCcCcCCCCCC--CEEEEEEEEECCEEEEeCEeecCCHH
Confidence 888 666777899999999999999889888899999999999998776654 89999999999999999999999999
Q ss_pred HHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 489 FLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 489 ~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
+|++||+++|++++.++|||+|++||+|||||||||||||+|++||.+||||||+|||+++||.|
T Consensus 358 ~q~~rf~~~g~~~~~~~~yl~a~~yG~PPhgG~glGiDRLvm~l~g~~~Irdvi~FPr~~~~~~p 422 (422)
T 1n9w_A 358 ELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFPRDRHRLTP 422 (422)
T ss_dssp HHHHHHHHTTCCGGGGHHHHGGGGBCCCSEEEEEEEHHHHHHHHTTCSSGGGGCSCC--------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHhCCCcHHhEEecCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988
|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-103 Score=851.69 Aligned_cols=436 Identities=22% Similarity=0.362 Sum_probs=357.5
Q ss_pred cCCCCCCcccccccCcce-EEeccccC-C--CCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHH
Q 008808 75 VNDPQTGKWSEAVNGREW-TVVGALNG-S--LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEM 150 (553)
Q Consensus 75 ~~~pyphkf~~~~~~~~~-~~i~~l~~-~--~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~ 150 (553)
|.|||||+|.++++..+. .+..++.. . ..|++|+|+|||+++|.+| |++|++|||+++.||||++.+. +++++
T Consensus 31 g~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~g-k~~F~~LrD~sg~iQvv~~~~~--~~~~~ 107 (504)
T 1e1o_A 31 QGVAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG-KASFVTLQDVGGRIQLYVARDS--LPEGV 107 (504)
T ss_dssp HSCSSCCCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEETTT--SSTTH
T ss_pred CCCCCCCCCcCceEHHHHHHHhhccCccccccCCCEEEEEEEEEEEecCC-CcEEEEEEECCeeEEEEEECCc--CCHHH
Confidence 678999999888765432 22222221 1 1288999999999999999 9999999999999999998752 34445
Q ss_pred HH-HHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCc
Q 008808 151 VR-FVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQ 228 (553)
Q Consensus 151 ~~-~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 228 (553)
++ .++.|+.||+|.|+|+|.+++ +|++||+++++.+||+|+.+ |.... +.+++
T Consensus 108 ~~~~~~~l~~g~~V~V~G~v~~~~------~ge~ei~~~~i~vl~~a~~plP~k~~-------------------~~~~~ 162 (504)
T 1e1o_A 108 YNDQFKKWDLGDIIGARGTLFKTQ------TGELSIHCTELRLLTKALRPLPDKFH-------------------GLQDQ 162 (504)
T ss_dssp HHHTGGGCCTTCEEEEEEEEEECT------TCCEEEEEEEEEEEECCSSCCCC--------------------------T
T ss_pred HHHHHhcCCCCCEEEEEEEEEecC------CceEEEEEEEEEEecccCCCCCcccc-------------------CCcCh
Confidence 55 668899999999999999864 46899999999999999877 84321 23578
Q ss_pred cccccccceeec-cHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee--cCCCCceecccChhhH
Q 008808 229 DTRLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLH 305 (553)
Q Consensus 229 e~Rl~~R~LdLr-~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~SPql~ 305 (553)
++|+++|||||| ++.++++|++||+|+++||+||+++||+||+||+|++.+.+++|++|.| +++|.++||+||||||
T Consensus 163 e~r~r~RyLdL~~~~~~~~~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~~~~~~~~~yL~~SpqLy 242 (504)
T 1e1o_A 163 EVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELY 242 (504)
T ss_dssp THHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEETTTTEEEEECSCSHHH
T ss_pred hhhhhccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEeccCCCCceEEeccCHHHH
Confidence 999999999996 7999999999999999999999999999999999996544444679988 7899999999999999
Q ss_pred hhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCC
Q 008808 306 KQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYP 385 (553)
Q Consensus 306 lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~ 385 (553)
||+||+||++||||||||||||+++ .|||||||||||||+|. ||+|+|+++|+||+++++.+.+++. + .+.
T Consensus 243 lk~L~v~G~~rVyeIg~~FR~E~~~-~rH~pEFt~lE~e~af~-d~~dlm~l~E~li~~~~~~v~~~~~--i-----~~~ 313 (504)
T 1e1o_A 243 LKRLVVGGFERVFEINRNFRNEGIS-VRHNPEFTMMELYMAYA-DYHDLIELTESLFRTLAQEVLGTTK--V-----TYG 313 (504)
T ss_dssp HHHHHHHTCCEEEEEEEEECCCCCC-C-CCSEEEEEEEEEESC-CHHHHHHHHHHHHHHHHHHHHSSSE--E-----EET
T ss_pred HHHHhhcCCCcEEEEcccccCCCCC-ccccCceeeeeeeecCC-CHHHHHHHHHHHHHHHHHHHhCCce--e-----eeC
Confidence 9999999999999999999999995 59999999999999998 6999999999999999999987664 2 122
Q ss_pred CccccCCCCCcccCHHHHHHHHHH-------------------cCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEecc
Q 008808 386 FEPLKYKPKTLRLTFEEGVQMLKD-------------------AGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRY 446 (553)
Q Consensus 386 ~~~~~~~~~~~~i~~~ea~~ll~~-------------------~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~ 446 (553)
...+++..||+|+||.||++.+.. .|+++++...+.......+..++++++.. ++||+||
T Consensus 314 ~~~i~~~~pf~rity~eAi~~~~~d~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ve~~~~~-p~fV~dy 392 (504)
T 1e1o_A 314 EHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQ-PTFITEY 392 (504)
T ss_dssp TEEEETTSCCEEEEHHHHHHHHSTTCCGGGGGSHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGGGCCS-CEEEECC
T ss_pred CEeeccCCCceEEeHHHHHHHHcCCCCccccCCHHHHHHHHHHcCCCCCCCcCHhHHHHHHHHHHhhccCCC-eEEEECC
Confidence 334567779999999999976532 12222111111112233344455556655 4667899
Q ss_pred CCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH------cCCChhc--HHHHHHHhhcCCCCc
Q 008808 447 PLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA------CGIDVKT--ISTYIDSFRYGAPPH 518 (553)
Q Consensus 447 P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~------~g~~~~~--~~~yl~a~~~G~pP~ 518 (553)
|..++|| +|++++||++++|||||++|.||+|||+|+|||++|++||++ .|.+++. ++|||+|++||+|||
T Consensus 393 P~~~~pf-~~~~~~dp~~~~~fDL~i~G~Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPh 471 (504)
T 1e1o_A 393 PAEVSPL-ARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPT 471 (504)
T ss_dssp BGGGCTT-BCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHHHHHHHHCCSE
T ss_pred CcccCcC-cCCCCCCCCceEEEEEEECCeEEccceeeeCCHHHHHHHHHHHHHHhhcCChhhhhchHHHHHHHhcCCCCc
Confidence 9999999 799999999999999999999999999999999999999975 2444432 499999999999999
Q ss_pred ceeeecHHHHHHHHcCCCCccccccccCCCC
Q 008808 519 GGFGVGLERVVMLFCGLNNIRKTSLYPRDPL 549 (553)
Q Consensus 519 ~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~ 549 (553)
||||||||||||+|||++||||||+|||++.
T Consensus 472 gG~glGiDRLvmlltg~~~IRdVi~FPr~~~ 502 (504)
T 1e1o_A 472 AGLGIGIDRMIMLFTNSHTIRDVILFPAMRP 502 (504)
T ss_dssp EEEEEEHHHHHHHHHTCSSGGGTSSSCCCCC
T ss_pred eeEEEcHHHHHHHHhCCCcHHhEeccCCCCC
Confidence 9999999999999999999999999999874
|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-102 Score=833.58 Aligned_cols=425 Identities=30% Similarity=0.468 Sum_probs=384.8
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
+.|++|...+.|++|+|+|||+++|.+| |++|++|||+++.||||++.+ .++++++++++.|+.||+|.|+|+|.++
T Consensus 5 ~~~~~l~~~~~~~~V~v~G~v~~~R~~g-~~~F~~lrD~~g~iQ~v~~~~--~~~~~~~~~~~~l~~~~~v~v~G~v~~~ 81 (434)
T 1x54_A 5 VYCQEVKPELDGKKVRLAGWVYTNMRVG-KKIFLWIRDSTGIVQAVVAKN--VVGEETFEKAKKLGRESSVIVEGIVKAD 81 (434)
T ss_dssp CCGGGCCGGGTTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEECHH--HHCHHHHHHHHTCCTTCEEEEEEEEEEC
T ss_pred EEHHHhhHHhCCCEEEEEEEEEEEecCC-CeEEEEEEECCEEEEEEEECC--cCCHHHHHHHhcCCCCCEEEEEEEEEec
Confidence 4577787778999999999999999999 899999999999999999764 2456778888999999999999999988
Q ss_pred CCccCCCceeEEEEEeEEEEeecCCCC-CC--ccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHH
Q 008808 173 DVEIKGATQQVEVQIKKLYCVSRAAKT-PI--TIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (553)
Q Consensus 173 ~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~--~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~ 249 (553)
+. .+|++||+++++++||+| ++ |+ +.+ ..+.|+|+++||||||++.++++|+
T Consensus 82 ~~----~~~~~el~~~~~~vl~~~-~~~P~~~~~~--------------------~~~~e~r~~~R~Ldlr~~~~~~~~~ 136 (434)
T 1x54_A 82 ER----APGGAEVHVEKLEVIQAV-SEFPIPENPE--------------------QASPELLLDYRHLHIRTPKASAIMK 136 (434)
T ss_dssp TT----SGGGEEEEEEEEEEEECC-SCCSSCSSGG--------------------GSCHHHHHHTHHHHTTSHHHHHHHH
T ss_pred CC----CCccEEEEEeEEEEeecC-CCCCCccccc--------------------CCCHHHhhhceeeeecCHHHHHHHH
Confidence 63 357899999999999999 66 87 433 1578999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCC
Q 008808 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDS 329 (553)
Q Consensus 250 ~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~ 329 (553)
+||+|++.+|+||.++||+||+||+|..+++++++++|.++|+|.++||+||||+|+|+ +++|++|||+||||||||++
T Consensus 137 ~rs~i~~~ir~~f~~~gF~eVeTP~l~~~~~e~~~~~f~~~~~~~~~~Lr~Spel~~~~-~~~g~~rvf~ig~~FR~E~~ 215 (434)
T 1x54_A 137 VKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKLKYFDKYAYLSQSAQLYLEA-AIFGLEKVWSLTPSFRAEKS 215 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEESCCSSCGGGCCEEEETTEEEEECSCSHHHHHH-HHHHHSEEEEEEEEECCCCC
T ss_pred HHHHHHHHHHHHHHHCCCEEEeCcEEEeecCCCCceeEEEeecCCcEEeccChHHHHHH-HhcCccceEEEecceecCCC
Confidence 99999999999999999999999999988888888899999999999999999999999 67889999999999999999
Q ss_pred CCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHHHHHH
Q 008808 330 YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKD 409 (553)
Q Consensus 330 ~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll~~ 409 (553)
++.||+||||||||||+|. +++|+|+++|+|++++++.+.++|..+++.++..++.-. .+..||+|++|.||++++++
T Consensus 216 ~~~RH~pEFtqle~e~~~~-~~~dlm~~~e~ll~~l~~~v~~~~~~~i~~~~~~~~~~~-~~~~pf~rity~ea~~~~~~ 293 (434)
T 1x54_A 216 RTRRHLTEFWHLELEAAWM-DLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLTTLK-NTEPPFPRISYDEAIDILQS 293 (434)
T ss_dssp CCSSCCSEEEEEEEEEETC-CHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTCSCCHHHH-TCCSSCCEEEHHHHHHHHHH
T ss_pred CCcccccEEEEeeEEEcCC-CHHHHHHHHHHHHHHHHHHHhhhchhhhhhcCccccccc-ccCCCCcEEEHHHHHHHHHh
Confidence 8889999999999999998 699999999999999999999888877766544322100 13458999999999999999
Q ss_pred cCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeC-CE-EEeeceeccCCH
Q 008808 410 AGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIR-GE-EIISGAQRIHIP 487 (553)
Q Consensus 410 ~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~-G~-Ei~~G~~r~~d~ 487 (553)
.|++..+..|++++.|+.|++. +.. ++||+|||..++|||++++++||+++++||||++ |. ||+|||+|+|||
T Consensus 294 ~g~~~~~~~dl~~~~e~~l~~~----~~~-p~fv~d~P~~~~pfy~~~~~~~p~~~~~fDl~~~~G~gEi~~G~~r~~d~ 368 (434)
T 1x54_A 294 KGVNVEWGDDLGADEERVLTEE----FDR-PFFVYGYPKHIKAFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQREDDY 368 (434)
T ss_dssp TTCCCCTTCCCCHHHHHHHHTT----CSS-CEEEEEEEGGGSCTTBCBCSSCTTEEEEEEEEETTTTEEEEEEEEBCCCH
T ss_pred cCCCcccCCccChHHHHHHHHH----hCC-cEEEEcCChhhCcccCCcCCCCCCeEEEEEEEECCCceEEecCeEeeCCH
Confidence 9988888888999999888653 333 5778899999999999999999999999999999 85 999999999999
Q ss_pred HHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 488 EFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 488 ~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
++|++||+++|++++.++|||+|++||+|||||||||||||+|+++|++|||||++|||+++||.|
T Consensus 369 ~~q~~rf~~~g~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdvi~FP~~~~~~~p 434 (434)
T 1x54_A 369 DKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKLDHIRWAALFPRTPARLYP 434 (434)
T ss_dssp HHHHHHHHHTTCCGGGGHHHHHTTTSSCCCEEEEEEEHHHHHHHHTTCSSGGGGSSSCCBTTBCCC
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhEEEccCcCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999998
|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-102 Score=842.52 Aligned_cols=436 Identities=22% Similarity=0.368 Sum_probs=360.1
Q ss_pred cCCCCCCcccccccCcce-EEeccccC-C--CCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHH
Q 008808 75 VNDPQTGKWSEAVNGREW-TVVGALNG-S--LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEM 150 (553)
Q Consensus 75 ~~~pyphkf~~~~~~~~~-~~i~~l~~-~--~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~ 150 (553)
|.|||||+|.++++..+. .+..++.. . ..|++|+|+|||+++|.+| |++|++|||+++.||||++.+ .+++++
T Consensus 23 g~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~g-k~~F~~LrD~sg~iQvv~~~~--~~~~~~ 99 (493)
T 3a74_A 23 GVDPFGKRFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMG-KAGFAHIQDVTGQIQIYVRQD--DVGEQQ 99 (493)
T ss_dssp TCCTTCCCCCCSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEEHH--HHHHHH
T ss_pred CCCCCCCCCcCceehHHHHHhhccccchhhccCCCEEEEEEEEEEEecCC-CcEEEEEEECCEeEEEEEECC--cCCHHH
Confidence 779999999988765432 22222221 1 1288999999999999999 899999999999999999865 244566
Q ss_pred HHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCcc
Q 008808 151 VRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQD 229 (553)
Q Consensus 151 ~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e 229 (553)
++.++.|+.||+|.|+|+|.+++ +|++||+++++.+||+|+.+ |.... +.++++
T Consensus 100 ~~~~~~l~~g~~v~V~G~v~~~~------~ge~ei~~~~i~vl~~~~~plP~k~~-------------------~~~~~e 154 (493)
T 3a74_A 100 YELFKISDLGDIVGVRGTMFKTK------VGELSIKVSSYEFLTKALRPLPEKYH-------------------GLKDIE 154 (493)
T ss_dssp HHHHHHCCTTCEEEEEEEEEECT------TCCEEEEEEEEEEEECCSSCCCCC------------------------CHH
T ss_pred HHHHhcCCCCCEEEEEEEEEeCC------CCcEEEEEEEEEEcccccCCCCcccc-------------------CCCCHh
Confidence 67778899999999999999864 46899999999999999877 84321 235789
Q ss_pred ccccccceeec-cHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee--cCCCCceecccChhhHh
Q 008808 230 TRLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHK 306 (553)
Q Consensus 230 ~Rl~~R~LdLr-~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~SPql~l 306 (553)
+|+++|||||| ++.++++|++||+|++.||+||.++||+||+||+|++.+++++|++|.+ +++|+++||+|||||||
T Consensus 155 ~r~r~RyldL~~~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~~~~~~~~~yLr~SpqLyl 234 (493)
T 3a74_A 155 QRYRQRYLDLIMNPESKKTFITRSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDMTLYMRIAIELHL 234 (493)
T ss_dssp HHHHTHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEEETTTTEEEEECSCSHHHH
T ss_pred hhhhcchhhhhcCHHHHHHHHHHHHHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEecccCCCceeEEecCHHHHH
Confidence 99999999996 7999999999999999999999999999999999997654445689987 68999999999999999
Q ss_pred hhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCC
Q 008808 307 QMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPF 386 (553)
Q Consensus 307 k~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~ 386 (553)
|+||+||++||||||||||||+++ .|||||||||||||+|. +|+|+|+++|+||+++++.+.+++. + .+..
T Consensus 235 k~l~v~G~~rVyeig~~FR~E~~~-~rH~pEFT~lE~e~af~-d~~dlm~l~E~ll~~l~~~v~~~~~--i-----~~~~ 305 (493)
T 3a74_A 235 KRLIVGGLEKVYEIGRVFRNEGIS-TRHNPEFTMLELYEAYA-DFRDIMKLTENLIAHIATEVLGTTK--I-----QYGE 305 (493)
T ss_dssp HHHHHTTCCEEEEEEEEECCCCCB-TTBCSEEEEEEEEEETC-CHHHHHHHHHHHHHHHHHHHHSCSE--E-----EETT
T ss_pred HHHhhcccCceEEECccccCCCCC-cccCCceeEEEEEecCC-CHHHHHHHHHHHHHHHHHHHhCCce--E-----eeCC
Confidence 999999999999999999999995 59999999999999998 6999999999999999999987663 2 1223
Q ss_pred ccccCCCCCcccCHHHHHHHHHH------------------cCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCC
Q 008808 387 EPLKYKPKTLRLTFEEGVQMLKD------------------AGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPL 448 (553)
Q Consensus 387 ~~~~~~~~~~~i~~~ea~~ll~~------------------~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~ 448 (553)
..+++..||+|+||.||++.+.. .|+++++...+..........++++++.. ++||+|||.
T Consensus 306 ~~i~~~~pf~rity~eai~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ve~~~~~-p~fv~dyP~ 384 (493)
T 3a74_A 306 HLVDLTPEWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFGHIVNEFFEQKVEDKLIQ-PTFIYGHPV 384 (493)
T ss_dssp EEEECCSSCEEEEHHHHHHHHTCCCTTSCCCHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGGGCCS-CEEEECCBG
T ss_pred EeeccCCCcceeeHHHHHHHHhCCCCccccCHHHHHHHHHHcCCCCCCCcChhHHHHHHHHHHhhcccCC-cEEEECCCc
Confidence 34567779999999999975532 22222111111122233344455555655 466789999
Q ss_pred cCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH------cCCChhc--HHHHHHHhhcCCCCcce
Q 008808 449 AVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA------CGIDVKT--ISTYIDSFRYGAPPHGG 520 (553)
Q Consensus 449 ~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~------~g~~~~~--~~~yl~a~~~G~pP~~G 520 (553)
.++|| +|++++||++++|||||++|.||+|||+|+|||++|++||++ .|.+++. ++|||+|++||+|||||
T Consensus 385 ~~~pf-~~~~~~dp~~~~~fDL~i~G~Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhgG 463 (493)
T 3a74_A 385 EISPL-AKKNPDDPRFTDRFELFIVGREHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDEDFLEALEYGMPPTGG 463 (493)
T ss_dssp GGCTT-BCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCSEEE
T ss_pred ccCCc-cCcCCCCCCeEEEEEEEeCCeEEecCcceeCCHHHHHHHHHHHHHHhhcCCchhhhccHHHHHHHhCCCCCcee
Confidence 99999 799999999999999999999999999999999999999975 3544432 49999999999999999
Q ss_pred eeecHHHHHHHHcCCCCccccccccCCCC
Q 008808 521 FGVGLERVVMLFCGLNNIRKTSLYPRDPL 549 (553)
Q Consensus 521 ~GiGidRLvm~l~g~~nIrdv~~FPr~p~ 549 (553)
||||||||||+|||++||||||+|||++.
T Consensus 464 ~glGiDRLvmlltg~~~IRdVi~FPr~~~ 492 (493)
T 3a74_A 464 LGIGVDRLVMLLTNSPSIRDVLLFPQMRH 492 (493)
T ss_dssp EEEEHHHHHHHHHTCSSGGGTSSSCCCCC
T ss_pred EEEcHHHHHHHHhCCCcHHhEeccCCCCC
Confidence 99999999999999999999999999863
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-97 Score=815.26 Aligned_cols=421 Identities=28% Similarity=0.456 Sum_probs=344.4
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
+.|++|...+.|++|+|+|||+++|.+| |++|++|||+++.||||++.+. + ++++++.|+.||+|.|+|+|..+
T Consensus 5 ~~~~~l~~~~~g~~V~l~GwV~~~R~~G-~~~Fi~LrD~~g~iQvv~~~~~----~-~~~~~~~l~~e~~V~V~G~v~~~ 78 (580)
T 1l0w_A 5 HYAGSLRETHVGEEVVLEGWVNRRRDLG-GLIFLDLRDREGLVQLVAHPAS----P-AYATAERVRPEWVVRAKGLVRLR 78 (580)
T ss_dssp SCGGGCCGGGTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECTTS----T-THHHHTTCCTTCEEEEEEEEEEC
T ss_pred EEHHHhHHHhCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCCh----h-HHHHHhcCCCCcEEEEEEEEEcC
Confidence 5577888888999999999999999999 9999999999999999998652 2 56778899999999999999887
Q ss_pred CCcc-CCCceeEEEEEeEEEEeecCCCCCCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHHH
Q 008808 173 DVEI-KGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQ 251 (553)
Q Consensus 173 ~~~~-~~~t~~~Ei~v~~i~~ls~~~~~P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~R 251 (553)
+... +..+|++||+++++.|||+|.+.|+.+.++.++ .....++.++||+|||||||++.++++|++|
T Consensus 79 ~~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~i~~~~~~-----------~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~R 147 (580)
T 1l0w_A 79 PEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRG-----------EEEKEASEELRLKYRYLDLRRRRMQENLRLR 147 (580)
T ss_dssp SSCCTTSTTTTEEEEEEEEEEEECCCCCSSCCSSGGGT-----------CCCCCCCHHHHHHTHHHHTTSHHHHHHHHHH
T ss_pred CCcCccCCCccEEEEEeEEEEeccCcCCCCCcchhccc-----------cccccCCHHHhhhhhHHHhcCHHHHHHHHHH
Confidence 5322 235788999999999999998447776553221 0123478999999999999999999999999
Q ss_pred HHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecC--CC-CceecccChhhHhhhcccCCCceeEEEeceecCCC
Q 008808 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY--KG-QSACLAQSPQLHKQMSICGDFGRVFETGPVFRAED 328 (553)
Q Consensus 252 s~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~--~~-~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~ 328 (553)
|+|+++||+||+++||+|||||+|+.++++ ||.+|.|.+ ++ ..+||+||||||||+||+||++||||||||||||+
T Consensus 148 s~i~~~iR~fl~~~gF~EVeTPiL~~s~~e-GAr~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~ 226 (580)
T 1l0w_A 148 HRVIKAIWDFLDREGFVQVETPFLTKSTPE-GARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDED 226 (580)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSSBCCCSS-SSCCCEEECTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCC
T ss_pred HHHHHHHHHHHHhCCcEEEeCCEEecCCCC-CCCCccccccccCCceeECccCHHHHHHHHHHhccCCeEEEeceeeCCC
Confidence 999999999999999999999999976555 688998864 43 44559999999999999999999999999999999
Q ss_pred CCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCCCcccCHHHHHHHH-
Q 008808 329 SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQML- 407 (553)
Q Consensus 329 ~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ea~~ll- 407 (553)
++++|| ||||||||||+|. +|+|+|+++|+|++++++.+.+. ++..||+|+||.||++.+
T Consensus 227 ~~~~r~-pEFT~lE~e~af~-d~~dvm~~~E~li~~i~~~v~~~-----------------~~~~pf~rity~eA~~~~g 287 (580)
T 1l0w_A 227 LRADRQ-PDFTQLDLEMSFV-EVEDVLELNERLMAHVFREALGV-----------------ELPLPFPRLSYEEAMERYG 287 (580)
T ss_dssp CCSSCC-SEEEEEEEEEESC-CHHHHHHHHHHHHHHHHHHHTCC-----------------CCCSSCCEEEHHHHHHHHS
T ss_pred CCCCcC-CCccceeeeecCC-CHHHHHHHHHHHHHHHHHHHhCC-----------------ccCCCccEEEHHHHHHHhc
Confidence 976555 6999999999998 69999999999999999987531 122366777777776543
Q ss_pred ------------------------------------------------------HHcCCC----CCCCCC-CCc------
Q 008808 408 ------------------------------------------------------KDAGVE----IDPLGD-LNT------ 422 (553)
Q Consensus 408 ------------------------------------------------------~~~g~~----~~~~~d-l~~------ 422 (553)
++.|.. +.+..+ +.+
T Consensus 288 ~dkpd~r~~~~~~d~~~~~~~~~~~~~~~~~~v~~i~~~~~~~r~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~k~l 367 (580)
T 1l0w_A 288 SDKPDLRFGLELKEVGPLFRQSGFRVFQEAESVKALALPKALSRKEVAELEEVAKRHKAQGLAWARVEEGGFSGGVAKFL 367 (580)
T ss_dssp SSSCCCSSCCCCEECGGGGSSSCCTHHHHSSEEEEEEESSCCCHHHHHHHHHHHHHTSCSCCEEEEEETTEEESTTHHHH
T ss_pred CCCcccccccchhhhhhhhhccccccccccceeEEEeccCccCHHHHHHHHHHHHHcCCCcceEEEecCccccchhhhhh
Confidence 111210 000011 212
Q ss_pred ---------------------------HHHHHHhHHHH---HHh-----CCccEEEeccCCc------------CCCCCC
Q 008808 423 ---------------------------ESERKLGQLVL---EKY-----GTEFYILHRYPLA------------VRPFYT 455 (553)
Q Consensus 423 ---------------------------~~e~~l~~~v~---~~~-----~~~~~ii~~~P~~------------~~pfy~ 455 (553)
..++.||++.. +.+ ...++||+|||.. ++|| +
T Consensus 368 ~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~Lg~lr~~l~~~~~lve~~~~p~fV~dfP~~~~~~~~~~~~a~~~PF-t 446 (580)
T 1l0w_A 368 EPVREALLQATEARPGDTLLFVAGPRKVAATALGAVRLRAADLLGLKREGFRFLWVVDFPLLEWDEEEEAWTYMHHPF-T 446 (580)
T ss_dssp GGGHHHHHHHHCCCTTCEEEEEEESHHHHHHHHHHHHHHHHHHTTCCCCSCCEEEEECCBSBCCCTTTSCCCBSSCTT-B
T ss_pred hHHHHHHHHHhCCCcCceEEEecCccchhhhhHHHHHHHHHHHhcccccccCeEEEEcCCcccccccccccccccCCc-c
Confidence 23445554322 221 2356888999996 8999 5
Q ss_pred cccCC-------CC-cc-eeEEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCChhc----HHHHHHHhhcCCCCcceee
Q 008808 456 MPCHD-------NS-LY-SNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKT----ISTYIDSFRYGAPPHGGFG 522 (553)
Q Consensus 456 ~~~~~-------~~-~~-~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~----~~~yl~a~~~G~pP~~G~G 522 (553)
|++++ || .+ +++||||+||.||+|||+|+|||++|++||+.+|++++. ++|||+||+||+|||||||
T Consensus 447 ~~~~~dl~~l~~dp~~~~a~~fDL~i~G~Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~~L~al~yG~PPhgG~g 526 (580)
T 1l0w_A 447 SPHPEDLPLLEKDPGRVRALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIA 526 (580)
T ss_dssp CBCSTTTTHHHHCGGGCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBTCCCEEEEE
T ss_pred CCCchhhhhhcCCccceeeeEEEEEeCCEEEEeCeeecCCHHHHHHHHHHcCCChhHHHhHHHHHHHHHhcCCCCCceEE
Confidence 77765 57 36 999999999999999999999999999999999988765 6799999999999999999
Q ss_pred ecHHHHHHHHcCCCCccccccccCCCCCC
Q 008808 523 VGLERVVMLFCGLNNIRKTSLYPRDPLRI 551 (553)
Q Consensus 523 iGidRLvm~l~g~~nIrdv~~FPr~p~rl 551 (553)
||||||+|+|||.+||||||+|||+++..
T Consensus 527 lGlDRLvMll~g~~sIRdVi~FP~~~~~~ 555 (580)
T 1l0w_A 527 WGLDRLLALMTGSPSIREVIAFPKNKEGK 555 (580)
T ss_dssp EEHHHHHHHHHTCSSGGGGSSSCCCTTSC
T ss_pred EcHHHHHHHHcCCCcHHeEecCCCCCCcc
Confidence 99999999999999999999999999875
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-95 Score=806.09 Aligned_cols=432 Identities=26% Similarity=0.421 Sum_probs=350.8
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
+.|++|...+.|++|+|+|||+++|.+| |++|++|||+++.||||++.+. .+++++++.|+.||+|.|+|+|..+
T Consensus 4 ~~~~~l~~~~~g~~V~l~GwV~~~R~~G-~~~Fi~LrD~~g~iQvv~~~~~----~~~~~~~~~l~~e~~V~V~G~v~~~ 78 (585)
T 1c0a_A 4 EYCGQLRLSHVGQQVTLCGWVNRRRDLG-SLIFIDMRDREGIVQVFFDPDR----ADALKLASELRNEFCIQVTGTVRAR 78 (585)
T ss_dssp SCGGGCCGGGTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECGGG----HHHHHHHTTCCTTCEEEEEEEEEEC
T ss_pred eEHHHHHHHhCCCEEEEEEEEEEEecCC-CcEEEEEEECCeeEEEEEeCCc----hHHHHHHhcCCCCCEEEEEeEEEcc
Confidence 4567787788999999999999999999 9999999999999999997642 4567788899999999999999887
Q ss_pred CCc---cCCCceeEEEEEeEEEEeecCCCCCCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHH
Q 008808 173 DVE---IKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (553)
Q Consensus 173 ~~~---~~~~t~~~Ei~v~~i~~ls~~~~~P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~ 249 (553)
+.. .+..||++||+++++.|||+|.+.|+.+.+ .++.++||+|||||||++.++++|+
T Consensus 79 ~~~~~n~~~~~geiEl~~~~i~vl~~a~~lP~~~~~-------------------~~~~e~Rl~~R~LdLR~~~~~~~l~ 139 (585)
T 1c0a_A 79 DEKNINRDMATGEIEVLASSLTIINRADVLPLDSNH-------------------VNTEEARLKYRYLDLRRPEMAQRLK 139 (585)
T ss_dssp CTTTCCTTSTTTTEEEEEEEEEEEECCCSCSSCTTS-------------------CCCHHHHHHTHHHHTTSHHHHHHHH
T ss_pred CcccccccCCCccEEEEEeEEEEEeccCCCCCCccc-------------------cCCHhHhhhchHhhhcCHHHHHHHH
Confidence 542 123578899999999999999843776543 2578999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecC--C-CCceecccChhhHhhhcccCCCceeEEEeceecC
Q 008808 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY--K-GQSACLAQSPQLHKQMSICGDFGRVFETGPVFRA 326 (553)
Q Consensus 250 ~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~--~-~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~ 326 (553)
+||+|+++||+||+++||+|||||+|+.++++ ||.+|.|.+ + +..+||+||||||||+||+||++|||||||||||
T Consensus 140 ~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~~e-GAr~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~ 218 (585)
T 1c0a_A 140 TRAKITSLVRRFMDDHGFLDIETPMLTKATPE-GARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRD 218 (585)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSSBCCCSS-SSCCCEEECSSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCcEEEeCCEEecCCCC-CCccceecccccCCceEeCccCHHHHHHHHHhcCCCceEEEeceeec
Confidence 99999999999999999999999999976555 688898854 3 4455699999999999999999999999999999
Q ss_pred CCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhh---------HHHHHHhhhcCC------------
Q 008808 327 EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVC---------KKELEAVAKQYP------------ 385 (553)
Q Consensus 327 E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~---------~~~i~~~~~~~~------------ 385 (553)
|+++++|| ||||||||||+|. +|+|+|+++|+||+++++.+.+.+ ...++..+..-|
T Consensus 219 E~~~t~r~-pEFT~lE~e~af~-d~~dvm~~~E~li~~i~~~v~~~~~~~f~r~ty~ea~~~~g~dkpd~r~~~~l~d~~ 296 (585)
T 1c0a_A 219 EDLRADRQ-PEFTQIDVETSFM-TAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRNPMELTDVA 296 (585)
T ss_dssp CCCBTTBC-SEEEEEEEEEESC-CHHHHHHHHHHHHHHHHHHHHSCCCCSCCEEEHHHHHHHHSCSSCCTTSCCCEEECH
T ss_pred CCCCCCcC-cccceeeeeecCC-CHHHHHHHHHHHHHHHHHHHhCCCccccceeeHHHHHHHhcCCCccccCCceeEEeh
Confidence 99976655 6999999999998 699999999999999999885422 222322221111
Q ss_pred -------Ccc--------------ccCC--CCCcccCHHHHHHHHHHcCCC-C---CCCC------CCC-----------
Q 008808 386 -------FEP--------------LKYK--PKTLRLTFEEGVQMLKDAGVE-I---DPLG------DLN----------- 421 (553)
Q Consensus 386 -------~~~--------------~~~~--~~~~~i~~~ea~~ll~~~g~~-~---~~~~------dl~----------- 421 (553)
+.. +.+. .++.+.+++++.+++++.|.. + .+.. ++.
T Consensus 297 ~~~~~~~f~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~ 376 (585)
T 1c0a_A 297 DLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKGLEGINSPVAKFLNAEI 376 (585)
T ss_dssp HHHTTCSCHHHHHHHHCTTEEEEEEEETTGGGCCHHHHHHHHHHHHHTTCSCCCEEEESCGGGGGGGEECTTGGGSCHHH
T ss_pred hhhccCCcceehhhhhccCceEEEEEccccCccCHhhHHHHHHHHHHcCCCCceeEEecccccccccccchhhhhcCHHH
Confidence 000 0000 125666788888888776632 0 0111 011
Q ss_pred -----------------------cHHHHHHhHHHHH---Hh------CCccEEEeccCCc-----------CCCCCCccc
Q 008808 422 -----------------------TESERKLGQLVLE---KY------GTEFYILHRYPLA-----------VRPFYTMPC 458 (553)
Q Consensus 422 -----------------------~~~e~~l~~~v~~---~~------~~~~~ii~~~P~~-----------~~pfy~~~~ 458 (553)
...+..||++..+ .+ ...++||+|||.. ++|| +|++
T Consensus 377 ~~~l~~~~~~~~~d~~~~~~~~~~~~~~~lG~lr~~l~~~~~lve~~~~~p~fV~dfP~~~~~~~~~~~a~~~PF-t~~~ 455 (585)
T 1c0a_A 377 IEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHPF-TSPK 455 (585)
T ss_dssp HHHHHHHTTCCTTCEEEEEEEEHHHHHHHHHHHHHHHHHHTTCSCSSCCCEEEEECCBSEEECSSSCEEESSCTT-BCBS
T ss_pred HHHHHHHhCCCcCcEEEEecCcccchhhhhHHHHHHHHHHhCcccccccccEEEEeCCccccccccccccccCCc-cCCC
Confidence 1235566655322 21 1246788999996 8999 5777
Q ss_pred CC-------CCc-c-eeEEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCChhc----HHHHHHHhhcCCCCcceeeecH
Q 008808 459 HD-------NSL-Y-SNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKT----ISTYIDSFRYGAPPHGGFGVGL 525 (553)
Q Consensus 459 ~~-------~~~-~-~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~----~~~yl~a~~~G~pP~~G~GiGi 525 (553)
++ ||+ + +++||||+||.||+|||+|+|||++|++||+.+|++++. ++|||+||+||+||||||||||
T Consensus 456 ~~dl~~l~~dp~~~~a~~fDL~i~G~Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~~~yL~al~yG~PPhgG~glGl 535 (585)
T 1c0a_A 456 DMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGL 535 (585)
T ss_dssp SCCHHHHHHSCTTCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTTCCCEEEEEEEH
T ss_pred chhhhhhccCCcceeeeEEEEEECCEEEeeeeeecCCHHHHHHHHHHcCCChHHHHhhHHHHHHHHhcCCCCceeEEEcH
Confidence 65 574 6 999999999999999999999999999999999998865 7899999999999999999999
Q ss_pred HHHHHHHcCCCCccccccccCCCCCCC
Q 008808 526 ERVVMLFCGLNNIRKTSLYPRDPLRIA 552 (553)
Q Consensus 526 dRLvm~l~g~~nIrdv~~FPr~p~rl~ 552 (553)
|||+|+|||.+||||||+|||+++..-
T Consensus 536 DRLvmlltg~~sIRdVi~FPr~~~~~~ 562 (585)
T 1c0a_A 536 DRLTMLLTGTDNIRDVIAFPKTTAAAC 562 (585)
T ss_dssp HHHHHHHHTCSCGGGGSSSCCCTTSCB
T ss_pred HHHHHHHcCCCcHHheecCCCCCCccc
Confidence 999999999999999999999998763
|
| >4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-87 Score=736.08 Aligned_cols=430 Identities=26% Similarity=0.396 Sum_probs=335.8
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
.+.|++|...+.|++|+|+|||+++|.+ +|++|||+++.||||++.+. .+++++++++.|+.||+|.|+|+|..
T Consensus 12 t~~~~~l~~~~~g~~V~l~GwV~~~R~~----~Fi~LrD~~g~iQvv~~~~~--~~~~~~~~~~~l~~e~~V~V~G~v~~ 85 (617)
T 4ah6_A 12 TNTCGELRSSHLGQEVTLCGWIQYRRQN----TFLVLRDFDGLVQVIIPQDE--SAASVKKILCEAPVESVVQVSGTVIS 85 (617)
T ss_dssp SSCGGGCCGGGTTCEEEEEEEECCCCTT----TEEEEECSSCEEEEECCCSS--SSHHHHHHHHHCCSSCEEEEEEEEEE
T ss_pred ceEHHHhHHHhCCCEEEEEEEeeeecCe----EEEEEEeCCcCEEEEEeCCc--CcHHHHHHHhcCCCCCEEEEEEEEEe
Confidence 3678889888999999999999999963 49999999999999998752 34678888999999999999999987
Q ss_pred CCCc---cCCCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHH
Q 008808 172 PDVE---IKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGI 247 (553)
Q Consensus 172 ~~~~---~~~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~i 247 (553)
++.. .+..||++||++++|+||++|. + |+++++.. .+++++||+|||||||++..+++
T Consensus 86 ~~~~~~n~~~~tgeiEl~~~~i~vL~~a~-~lP~~~~~~~-----------------~~~ee~Rl~~R~LdLR~~~~~~~ 147 (617)
T 4ah6_A 86 RPAGQENPKMPTGEIEIKVKTAELLNACK-KLPFEIKNFV-----------------KKTEALRLQYRYLDLRSFQMQYN 147 (617)
T ss_dssp CSTTCCCTTSTTTTEEEEEEEEEEEECBC-CCSSCTTTTC-----------------CSCHHHHHHTHHHHTTSHHHHHH
T ss_pred CCccccCccCCCCcEEEEEeEEEEeecCC-CCCccccccc-----------------ccChhhhccceeeeecchHHHHH
Confidence 5432 2345788999999999999998 6 99876532 35789999999999999999999
Q ss_pred HHHHHHHHHHHHHHhH-hCCcEEEecceeeccCCCCCccceeecC--CCCceecccChhhHhhhcccCCCceeEEEecee
Q 008808 248 FRIQSQVGNIFRQFLL-SENFVEIHTPKLIAGSSEGGSAVFRLDY--KGQSACLAQSPQLHKQMSICGDFGRVFETGPVF 324 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~-~~gF~EV~TP~l~~~~~egga~~F~v~~--~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~F 324 (553)
|++||+|+++||+||. ++||+||+||+|+++ +++||.+|.|.+ +|..+||+||||||||+||++|++|||||||||
T Consensus 148 lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~s-t~~GA~~F~v~~~~~g~~~~L~qSpql~kq~l~v~g~~rvfqi~~~F 226 (617)
T 4ah6_A 148 LRLRSQMVMKMREYLCNLHGFVDIETPTLFKR-TPGGAKEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCY 226 (617)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEECCCCSSBCC-CCSSSCCCEEECSSTTCEEECCSSTTHHHHHHHHTSCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeCCeeccC-CCCCCcCceeccccCCcccccccCHHHHHHHHHhcccCcEEEEEhhe
Confidence 9999999999999996 799999999999864 677899999865 688999999999999999999999999999999
Q ss_pred cCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhh---------hhHHHHHHhhhcCC-----Ccccc
Q 008808 325 RAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNN---------VCKKELEAVAKQYP-----FEPLK 390 (553)
Q Consensus 325 R~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~---------~~~~~i~~~~~~~~-----~~~~~ 390 (553)
|||+++ .+|+||||||||||+|. +|+|+|+++|+|++++++.+.. .|..-+...+..-| .+-.+
T Consensus 227 R~E~~~-t~r~pEFt~lE~e~af~-d~~d~m~~~E~l~~~~~~~~~~~~~~pf~r~ty~eA~~~ygsDkPDlR~~~ei~D 304 (617)
T 4ah6_A 227 RDEGSR-PDRQPEFTQIDIEMSFV-DQTGIQSLIEGLLQYSWPNDKDPVVVPFPTMTFAEVLATYGTDKPDTRFGMKIID 304 (617)
T ss_dssp CCCSSC-SSSCSEEEEEEEEEESC-CHHHHHHHHHHHHHHHSCSSSCCCCSSCCEEEHHHHHHHTSSSSCCSSSCCCEEE
T ss_pred ecccCC-CCcCcceecceeeecCC-CHHHHHHHHHHHHHHHHHHhcCccCCCceEeEHHHHHHHHcCCCCccccCccccc
Confidence 999985 45699999999999998 6999999999999999864321 11111211111100 00000
Q ss_pred CC------------------C-------------CCcccCHHHHHHHHHH-cCCC------CCCC---CCCC--------
Q 008808 391 YK------------------P-------------KTLRLTFEEGVQMLKD-AGVE------IDPL---GDLN-------- 421 (553)
Q Consensus 391 ~~------------------~-------------~~~~i~~~ea~~ll~~-~g~~------~~~~---~dl~-------- 421 (553)
.. . .+.|-..++..+..+. .|.. .... ..+.
T Consensus 305 Vtdif~~s~FkVF~~~~~~~~g~VkAI~vpg~a~~lsRK~id~L~e~ak~~~g~ggl~~~~~~d~~~~~~I~Kflsee~~ 384 (617)
T 4ah6_A 305 ISDVFRNTEIGFLQDALSKPHGTVKAICIPEGAKYLKRKDIESIRNFAADHFNQEILPVFLNANRNWNSPVANFIMESQR 384 (617)
T ss_dssp CGGGGSSCCCHHHHHHTTSTTEEEEEEEEESCTTTSCTTTHHHHHHHHHHSSCCCEEEECSSTTTTSSCTTHHHHHHHHH
T ss_pred HHHHhccCCchhHhhhhhcCCCeEEEEEcCCCccccchhhHHHHHHHHHHhcCCceEEEEEecCCccccchhhhcCHHHH
Confidence 00 0 0011112222222233 1210 0000 0000
Q ss_pred ----------------------cHHHHHHhHHH---HHHhC-----------CccEEEeccCC-------------cCCC
Q 008808 422 ----------------------TESERKLGQLV---LEKYG-----------TEFYILHRYPL-------------AVRP 452 (553)
Q Consensus 422 ----------------------~~~e~~l~~~v---~~~~~-----------~~~~ii~~~P~-------------~~~p 452 (553)
......||.+. .+.++ ..|.||+|||. .++|
T Consensus 385 ~~L~e~l~a~~GDlIff~Ag~~~~v~~~LG~LR~~l~~~L~~~~~~l~~~~~~~f~WvvdfPlf~~~~~~~~~~~a~HhP 464 (617)
T 4ah6_A 385 LELIRLMETQEEDVVLLTAGEHNKACSLLGKLRLECADLLETRGVVLRDPTLFSFLWVVDFPLFLPKEENPRELESAHHP 464 (617)
T ss_dssp HHHHHHHTCCSSEEEEEEEEEHHHHHHHHHHHHHHHHHHHHTTSCCSCCTTSCCEEEEECCBSBCCCSSSSSSCCBSSCS
T ss_pred HHHHHHhCCCCCCEEEEecCChHHHHHHHHHHHHHHHHHhhhccccccCCCCeEEEEEeccCCcCCccccccceeeccCC
Confidence 01123345432 12221 24789999996 3689
Q ss_pred CCCcccCCCC---------cceeEEEEEeCCEEEeeceeccCCHHHHHHHHH-HcCCChhcHHHHHHHhhcCCCCcceee
Q 008808 453 FYTMPCHDNS---------LYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQ-ACGIDVKTISTYIDSFRYGAPPHGGFG 522 (553)
Q Consensus 453 fy~~~~~~~~---------~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~-~~g~~~~~~~~yl~a~~~G~pP~~G~G 522 (553)
| |||+++|- -.+++|||++||.||+|||+|+||++.|+++|+ ..|++++.+.|||+||+||+|||||||
T Consensus 465 F-T~P~~~d~~~l~~~p~~~~a~~ydlv~~g~El~~gs~ri~~~~~q~~~f~~~~~~~~~~~~~~l~a~~~G~pphgG~a 543 (617)
T 4ah6_A 465 F-TAPHPSDIHLLYTEPKKARSQHYDLVLNGNEIGGGSIRIHNAELQRYILATLLKEDVKMLSHLLQALDYGAPPHGGIA 543 (617)
T ss_dssp S-CCCCCTTSTHHHHSTTSSBCCCEEEEETTEEEEEEECCCCSHHHHHHHHHHHCSSTHHHHHHHHHHHTBTCCCEEEEE
T ss_pred c-CCCChhhHHHhhcChhhhhhceEEEEECCEEEeeeeEEcCCHHHHHHHHHHhhccchhhHHHHHHHHHcCCCCCCcee
Confidence 9 99987653 248999999999999999999999999999999 789999999999999999999999999
Q ss_pred ecHHHHHHHHcCCCCccccccccCCCC
Q 008808 523 VGLERVVMLFCGLNNIRKTSLYPRDPL 549 (553)
Q Consensus 523 iGidRLvm~l~g~~nIrdv~~FPr~p~ 549 (553)
+|||||||+++|.+||||||+||++.+
T Consensus 544 ~G~dRlvml~~g~~~irdvi~fP~~~~ 570 (617)
T 4ah6_A 544 LGLDRLICLVTGSPSIRDVIAFPKSFR 570 (617)
T ss_dssp EEHHHHHHHHHTCSSGGGSSSSCCCSS
T ss_pred ecHHHHHHHHcCCCchheEEecCCCCC
Confidence 999999999999999999999999765
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-77 Score=619.90 Aligned_cols=282 Identities=19% Similarity=0.294 Sum_probs=240.5
Q ss_pred eeccHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCC-CCccceeecCCC------CceecccChhhHhhhcc
Q 008808 238 DIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE-GGSAVFRLDYKG------QSACLAQSPQLHKQMSI 310 (553)
Q Consensus 238 dLr~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~e-gga~~F~v~~~~------~~~~L~~SPql~lk~li 310 (553)
.+|++ ++++|++||+|++.||+||.++||+||+||+|++++++ +++.+|.|+|++ .++||+||||||||+||
T Consensus 27 ~~~~~-~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~ 105 (345)
T 3a5y_A 27 WQPSA-SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLL 105 (345)
T ss_dssp TSCSS-CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHH
T ss_pred cCCch-HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEEEecCcccccCCCEeecCCHHHHHHHHH
Confidence 34555 78999999999999999999999999999999976654 467899999997 78999999999999999
Q ss_pred cCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCcccc
Q 008808 311 CGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLK 390 (553)
Q Consensus 311 ~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~ 390 (553)
++|++||||||||||||++ |.|||||||||||||+|. +|+|+|+++|+||+++++.
T Consensus 106 ~~g~~rvyqIg~~FR~E~~-~~rH~pEFt~lE~e~af~-d~~d~m~~~E~li~~v~~~---------------------- 161 (345)
T 3a5y_A 106 VAGCGPVFQLCRSFRNEEM-GRYHNPEFTMLEWYRPHY-DMYRLMNEVDDLLQQVLDC---------------------- 161 (345)
T ss_dssp HTTCCSEEEEEEEECCCCC-BTTBCSEEEEEEEEEETC-CHHHHHHHHHHHHHHHHCC----------------------
T ss_pred HcCCCcEEEEEcceeCCCC-cccccchhheeeeeeeCC-CHHHHHHHHHHHHHHHHcC----------------------
Confidence 9999999999999999998 999999999999999998 6999999999999999851
Q ss_pred CCCCCcccCHHHHH-----------------HHHHHcCCC-CCCC-CCCCcHHHHHHhHHHHHHhC-CccEEEeccCCcC
Q 008808 391 YKPKTLRLTFEEGV-----------------QMLKDAGVE-IDPL-GDLNTESERKLGQLVLEKYG-TEFYILHRYPLAV 450 (553)
Q Consensus 391 ~~~~~~~i~~~ea~-----------------~ll~~~g~~-~~~~-~dl~~~~e~~l~~~v~~~~~-~~~~ii~~~P~~~ 450 (553)
.||+++||.||+ +++++.|++ +.+. .++.+..|++|++.|+++++ ..++||+|||..+
T Consensus 162 --~~~~rity~ea~~~~~g~d~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~e~~l~~~ve~~lg~~~p~fv~dyP~~~ 239 (345)
T 3a5y_A 162 --PAAESLSYQQAFLRYLEIDPLSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPASQ 239 (345)
T ss_dssp --CCCEEEEHHHHHHHHTCCCTTCCC------------------------HHHHHHHHHHTGGGSSSSSCEEEECCBGGG
T ss_pred --CCCcEeeHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCcccCCCcCCHhHHHHHHHHHHHHHHcCCCCEEEEECCChhh
Confidence 134555555554 445556655 4444 46778889999999999886 5678899999999
Q ss_pred CCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHHc-------CCChhcH-HHHHHHhhcCCCCcceee
Q 008808 451 RPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQAC-------GIDVKTI-STYIDSFRYGAPPHGGFG 522 (553)
Q Consensus 451 ~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~-------g~~~~~~-~~yl~a~~~G~pP~~G~G 522 (553)
+|| +++++++|++++|||||++|.||+|||+|+|||++|++||+.. |+++..+ +|||+|++||+|||||||
T Consensus 240 ~~~-~~~~~~~~~~a~~fDL~~~G~Ei~~G~~rl~d~~~q~~rf~~~~~~~~~~g~~~~~~d~~yl~al~yG~PPhgG~g 318 (345)
T 3a5y_A 240 ASL-AQISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPIDQNLIEALKVGMPDCSGVA 318 (345)
T ss_dssp CTT-BCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHCCCSEEEEE
T ss_pred Chh-hCCCCCCCCeEEEEEEEECCEEEeeeEEEeCCHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCCCCcEEE
Confidence 999 6889999999999999999999999999999999999999864 8887776 799999999999999999
Q ss_pred ecHHHHHHHHcCCCCccccccccCC
Q 008808 523 VGLERVVMLFCGLNNIRKTSLYPRD 547 (553)
Q Consensus 523 iGidRLvm~l~g~~nIrdv~~FPr~ 547 (553)
||||||+|++||++||||||+|||+
T Consensus 319 lGiDRLvmll~g~~~IRdVi~FPr~ 343 (345)
T 3a5y_A 319 LGVDRLVMLALGAETLAEVIAFSVD 343 (345)
T ss_dssp EEHHHHHHHHHTCSSGGGGSSSCTT
T ss_pred EcHHHHHHHHcCCCcHheEecCCcc
Confidence 9999999999999999999999997
|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-68 Score=546.81 Aligned_cols=278 Identities=23% Similarity=0.377 Sum_probs=247.9
Q ss_pred cccceeeccHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeecc--------CCCCCccceeecCCCCceecccChhh
Q 008808 233 NNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAG--------SSEGGSAVFRLDYKGQSACLAQSPQL 304 (553)
Q Consensus 233 ~~R~LdLr~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~--------~~egga~~F~v~~~~~~~~L~~SPql 304 (553)
+|||||||++ ++++|++|++|++.+|+||.++||+||+||+|... .+++ +++|.++|+|.++||++|||+
T Consensus 1 ~~r~l~lr~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~~~~~~~~~L~~Spe~ 78 (294)
T 1nnh_A 1 MNAVEIISRE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEVEIYGVKMRLTHSMIL 78 (294)
T ss_dssp -CHHHHHTSC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEEEETTEEEEECSCSHH
T ss_pred CchHHhhhcc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEEEcCCCCEEeccChHH
Confidence 5899999999 99999999999999999999999999999999987 6776 999999999999999999999
Q ss_pred HhhhcccCCCceeEEEeceecCCC--CCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhh
Q 008808 305 HKQMSICGDFGRVFETGPVFRAED--SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAK 382 (553)
Q Consensus 305 ~lk~li~~g~~rVfeIg~~FR~E~--~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~ 382 (553)
|+|+++++|++|||+||||||||+ +++.||+|||||||+||++. +++|+|+++|+|+++++..+.+.+ +.
T Consensus 79 ~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~-~~~~l~~~~e~l~~~l~~~~~~~~-------~~ 150 (294)
T 1nnh_A 79 HKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERA-KMEDIMRLIERLVYGLFRKAEEWT-------GR 150 (294)
T ss_dssp HHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETC-CHHHHHHHHHHHHHHHHHHHHHHH-------SS
T ss_pred HHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCC-CHHHHHHHHHHHHHHHHHHHHhhh-------cc
Confidence 999999999999999999999999 87789999999999999998 699999999999999998775421 11
Q ss_pred cCCCcccc-CCCCCcccCHHHHHHHHHHcCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCC
Q 008808 383 QYPFEPLK-YKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDN 461 (553)
Q Consensus 383 ~~~~~~~~-~~~~~~~i~~~ea~~ll~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~ 461 (553)
.++ +.. |.|++|.||++ +.|. ..|+ + +.+.. +.||+||| +|||++. |
T Consensus 151 -----~i~~~~~-~~r~~y~ea~~---~~g~----------~~er--~----~~~~~-P~~v~~~P---~pf~~~~---d 198 (294)
T 1nnh_A 151 -----EFPKTKR-FEVFEYSEVLE---EFGS----------DEKA--S----QEMEE-PFWIINIP---REFYDRE---V 198 (294)
T ss_dssp -----CCCCCSS-CEEEEHHHHHH---HTSS----------HHHH--H----HHCSS-CEEEECCC---CCTTBCE---E
T ss_pred -----ccccCCC-ceEeEHHHHHH---HhCC----------hHhh--h----hhcCC-CEEEEcCC---hHHhCCC---C
Confidence 122 233 89999999985 4442 4455 2 22333 56788999 9997654 8
Q ss_pred CcceeEEEEEeC-CE-EEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCC-CcceeeecHHHHHHHHcCCCCc
Q 008808 462 SLYSNSFDVFIR-GE-EIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAP-PHGGFGVGLERVVMLFCGLNNI 538 (553)
Q Consensus 462 ~~~~~~fdl~~~-G~-Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~p-P~~G~GiGidRLvm~l~g~~nI 538 (553)
|+++++||+|++ |. ||+|||+|+|||+.|.+|++.+|+++..++|||+|++||+| ||||||||||||+|+++|++||
T Consensus 199 ~~~~~~~Dl~~~~g~~Ei~~g~~r~~d~~~l~~~~~~~g~~~~~~~~~l~~l~~G~p~P~~G~glGieRL~mll~g~~~I 278 (294)
T 1nnh_A 199 DGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHI 278 (294)
T ss_dssp TTEECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHHHHTTCCCCEEEEEEEHHHHHHHHHTCSSG
T ss_pred CCeEEEEEEEECCCcEEEecCeeecCCHHHHHHHHHHcCCCccCHHHHHHHHhcCCCCCceEEEEcHHHHHHHHhCCCCH
Confidence 899999999999 95 99999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred cccccccCCCCCCC
Q 008808 539 RKTSLYPRDPLRIA 552 (553)
Q Consensus 539 rdv~~FPr~p~rl~ 552 (553)
|||++|||+++|+.
T Consensus 279 rdvi~Fp~~~~~~~ 292 (294)
T 1nnh_A 279 AEVQPFPRIPGIPA 292 (294)
T ss_dssp GGGCSSCCCTTSCC
T ss_pred HHEEeccCCCCccc
Confidence 99999999999974
|
| >3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-26 Score=236.00 Aligned_cols=148 Identities=21% Similarity=0.295 Sum_probs=118.6
Q ss_pred CCceeEEEEEeEEEEeecCCCC-CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHH-----H
Q 008808 178 GATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI-----Q 251 (553)
Q Consensus 178 ~~t~~~Ei~v~~i~~ls~~~~~-P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~-----R 251 (553)
.+.|++||+++++.+|++|..+ |+++++. ..||++||||+|++..++++++ +
T Consensus 22 ~~~~~~ei~~~~~~vl~~a~~~~P~~~~~~----------------------~~~l~~r~l~~R~~~~~~i~~~g~~~~~ 79 (290)
T 3qtc_A 22 SAPALTKSQTDRLEVLLNPKDEISLNSGKP----------------------FRELESELLSRRKKDLQQIYAEERENYL 79 (290)
T ss_dssp --CCCCHHHHHHHHHHCCTTCC----CCSC----------------------HHHHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCceEEEEhhhhhhhccCCCCCCCCcchh----------------------hhhhhhHHHHhccchHHHHhccccccHH
Confidence 3457899999999999999877 8865431 2389999999999999999999 9
Q ss_pred HHHHHHHHHHhHhCCcEEEecceeeccCC------CCCcccee-ecCCCCceecc--cChhhHhhhcc----cCCCceeE
Q 008808 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSS------EGGSAVFR-LDYKGQSACLA--QSPQLHKQMSI----CGDFGRVF 318 (553)
Q Consensus 252 s~i~~~iR~fl~~~gF~EV~TP~l~~~~~------egga~~F~-v~~~~~~~~L~--~SPql~lk~li----~~g~~rVf 318 (553)
+++.+.+|++|...||.||.||+|++... .++...+. +.+++..++|| +||+++.++.. .++..|+|
T Consensus 80 ~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~p~rlf 159 (290)
T 3qtc_A 80 GKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKIF 159 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEETTTEEECSCSHHHHHHHHHHHTTTSCSSEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCceeeHHHHHhcCCCcCCchhhhheeeCCCeeEcccChHHHHHHHHHhhccCCCCeEEE
Confidence 99999999999999999999999986432 11211222 34567889999 99999966543 25679999
Q ss_pred EEeceecCCCCCCCCCcCcccceeEEeccc
Q 008808 319 ETGPVFRAEDSYTHRHLCEFTGLDVEMEIK 348 (553)
Q Consensus 319 eIg~~FR~E~~~t~rHl~EFt~lE~e~a~~ 348 (553)
|||+|||+|+. +.+|++||||+|+++++.
T Consensus 160 eiG~vFR~E~~-~~~~~~Ef~ql~~~~~g~ 188 (290)
T 3qtc_A 160 EIGPCYRKESD-GKEHLEEFTMLVFWQMGS 188 (290)
T ss_dssp EEEEEECCCSC-SSSCCSEEEEEEEEEEST
T ss_pred EEcCEEecCCC-CCcCcchheEEEEEEEcC
Confidence 99999999975 788999999999999865
|
| >12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-21 Score=193.85 Aligned_cols=273 Identities=16% Similarity=0.197 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHHHHhH-----hCCcEEEecceeeccCCC-----CC-ccceeecCC---CCceecccChhhHhhhccc-C
Q 008808 248 FRIQSQVGNIFRQFLL-----SENFVEIHTPKLIAGSSE-----GG-SAVFRLDYK---GQSACLAQSPQLHKQMSIC-G 312 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~-----~~gF~EV~TP~l~~~~~e-----gg-a~~F~v~~~---~~~~~L~~SPql~lk~li~-~ 312 (553)
++-....|+++++||. +.|+++|..|+++...++ .| .+|..++.. |..+-..+|--.||++++. .
T Consensus 5 ~~~tq~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~ErpV~f~i~~~~~~~~eivhSLaKWKR~aL~~y 84 (330)
T 12as_A 5 YIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQH 84 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCCceecceEecccCCCceEEEeeeHHHHHHHHHHhC
Confidence 4556778899999999 999999999998753321 12 334444333 7788999999999999986 4
Q ss_pred CC---ceeEEEeceecCCCC-CCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCcc
Q 008808 313 DF---GRVFETGPVFRAEDS-YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEP 388 (553)
Q Consensus 313 g~---~rVfeIg~~FR~E~~-~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~ 388 (553)
|| +.+|.-.++.|.++. -|.+|.-+|+|.|||..+.. -+..|+.++++++.|+..+...-. .+...|...+
T Consensus 85 ~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~-~~R~~~~Lk~tV~~Iy~~ik~tE~----~~~~~y~l~p 159 (330)
T 12as_A 85 DFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGD-GERQFSTLKSTVEAIWAGIKATEA----AVSEEFGLAP 159 (330)
T ss_dssp TCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCT-TCCSHHHHHHHHHHHHHHHHHHHH----HHHHHSCCCC
T ss_pred CCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccc-cchHHHHHHHHHHHHHHHHHHHHH----HHHHHhccCc
Confidence 58 999999999998654 68999999999999999874 688899999998888877753211 2233341111
Q ss_pred ccCCCCCcccCHHHHHHHHHHcCCCCCCCCCCC-cHHHHHHhHHHHHHhCCccEEEeccCCcCC--CCCCcccCCCCcce
Q 008808 389 LKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLN-TESERKLGQLVLEKYGTEFYILHRYPLAVR--PFYTMPCHDNSLYS 465 (553)
Q Consensus 389 ~~~~~~~~~i~~~ea~~ll~~~g~~~~~~~dl~-~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~--pfy~~~~~~~~~~~ 465 (553)
. +.+++..+|.+|+.++ .+ +++ .+-|..+. ++++ .+||.+.+..++ -++....|+.+.+.
T Consensus 160 ~-Lp~~i~fitsqeL~~~---YP-------~lt~keRE~~i~----ke~g--aVFii~IG~~L~~g~~HD~RaPDYDDW~ 222 (330)
T 12as_A 160 F-LPDQIHFVHSQELLSR---YP-------DLDAKGRERAIA----KDLG--AVFLVGIGGKLSDGHRHDVRAPDYDDWS 222 (330)
T ss_dssp C-SCSSCEEEEHHHHHHH---SS-------SSCHHHHHHHHH----HHHS--EEEEECCSSCCSSSCCSSCCCTTTBCCS
T ss_pred C-CCCceEEEeHHHHHHH---cC-------CCChHHHHHHHH----HhhC--CEEEEecCCccCCCCcCcCcCCCCCCcc
Confidence 1 3446677888887643 22 232 23344332 3333 466677775432 14555666666777
Q ss_pred ---------eEEEEEe-C----C-EEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcC-CCCcceeeecHHHHH
Q 008808 466 ---------NSFDVFI-R----G-EEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYG-APPHGGFGVGLERVV 529 (553)
Q Consensus 466 ---------~~fdl~~-~----G-~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G-~pP~~G~GiGidRLv 529 (553)
...|+++ + + .||.|++.| .|++.|.++++..|.......+|..++..| +|++.|+|||..||+
T Consensus 223 t~~~~~~~gLNGDilvw~~vl~~a~ElSSMGIR-Vd~~~L~~QL~~~g~~er~~~~yh~~ll~g~LP~TiGGGIGQSRLc 301 (330)
T 12as_A 223 TPSELGHAGLNGDILVWNPVLEDAFELSSMGIR-VDADTLKHQLALTGDEDRLELEWHQALLRGEMPQTIGGGIGQSRLT 301 (330)
T ss_dssp SBCTTSSBCSEEEEEEEETTTTEEEEEEEEEEB-CCHHHHHHHHHHHTCTTGGGSHHHHHHHTTCSCCEEEEEEEHHHHH
T ss_pred ccccccccCccceEEEeccccCceeEEecceEE-eCHHHHHHHHHHcCCChhhccHHHHHHHcCCCCccccccccHHHHH
Confidence 8999998 4 4 899999999 999999999999999888888999999999 699999999999999
Q ss_pred HHHcCCCCcccccc
Q 008808 530 MLFCGLNNIRKTSL 543 (553)
Q Consensus 530 m~l~g~~nIrdv~~ 543 (553)
|+|++..+|.+|.+
T Consensus 302 mflL~k~HIGEVQ~ 315 (330)
T 12as_A 302 MLLLQLPHIGQVQA 315 (330)
T ss_dssp HHHHTCSCGGGTSC
T ss_pred HHHhccchhheeec
Confidence 99999999999964
|
| >3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A | Back alignment and structure |
|---|
Probab=99.74 E-value=8.9e-18 Score=170.62 Aligned_cols=184 Identities=26% Similarity=0.424 Sum_probs=120.3
Q ss_pred HHHHHHHHHHhHhCCcEEEecceeeccC---CCCC-c--ccee-ecCCCCceeccc--ChhhHh--hhcccCCCc---ee
Q 008808 252 SQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGG-S--AVFR-LDYKGQSACLAQ--SPQLHK--QMSICGDFG---RV 317 (553)
Q Consensus 252 s~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egg-a--~~F~-v~~~~~~~~L~~--SPql~l--k~li~~g~~---rV 317 (553)
.++.+.+|++|...||.||.||.|.... ..|. . ..|. +++.+..++||. +|.+.. ...+ ..-+ |+
T Consensus 74 ~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~-~~~~~Plrl 152 (288)
T 3dsq_A 74 LELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELE-RLWDKPIRI 152 (288)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHT-TTSCSCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEeecccccchhhhhcChHHHHHHHHHHH-hCCCCCEEE
Confidence 6789999999999999999999997421 1111 1 1222 233446789984 566552 2222 2223 99
Q ss_pred EEEeceecCCCCCCCCCcCcccceeEEecccc---CHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCCC
Q 008808 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK---HYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPK 394 (553)
Q Consensus 318 feIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~---~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~ 394 (553)
|+||+|||+|.. +..|.+||+|+|+++.... ++.++..+++++
T Consensus 153 feiG~vFR~E~~-~~~r~~EF~qle~~i~g~~~~~~f~elkg~le~l--------------------------------- 198 (288)
T 3dsq_A 153 FEIGTCYRKESQ-GAQHLNEFTMLNLTELGTPLEERHQRLEDMARWV--------------------------------- 198 (288)
T ss_dssp EEEEEEECSCCS-SSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHH---------------------------------
T ss_pred EEEeeEEecCCC-CCCcCccEEEEEEEEEcCCchhhHHHHHHHHHHH---------------------------------
Confidence 999999999986 6789999999999875321 012222211111
Q ss_pred CcccCHHHHHHHHHHcCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCC
Q 008808 395 TLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRG 474 (553)
Q Consensus 395 ~~~i~~~ea~~ll~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G 474 (553)
++..|++ ++-+.. | +....+.++|++++|
T Consensus 199 ------------l~~LGl~-------------------------~~~~~~--~------------s~e~~~~~~~l~~~~ 227 (288)
T 3dsq_A 199 ------------LEAAGIR-------------------------EFELVT--E------------SSVVYGDTVDVMKGD 227 (288)
T ss_dssp ------------HHHHTCC-------------------------CCEEEE--C------------CCCSSCCCEEEEETT
T ss_pred ------------HHHcCCC-------------------------CcEEec--C------------CcceEEEEEEEEeCC
Confidence 1112210 111211 1 011224568999999
Q ss_pred EEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcC-CCCcceeeecHHHHHHHHcCCCCcccccc
Q 008808 475 EEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYG-APPHGGFGVGLERVVMLFCGLNNIRKTSL 543 (553)
Q Consensus 475 ~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G-~pP~~G~GiGidRLvm~l~g~~nIrdv~~ 543 (553)
.||++|+.+.+..+. ++| .|||+|||||+|||+|+++|.+|||++.-
T Consensus 228 ~eig~~Gv~p~vl~~----------------------~~gi~~~~~gfglglerl~m~~~g~~~iR~~~~ 275 (288)
T 3dsq_A 228 LELASGAMGPHFLDE----------------------KWEIFDPWVGLGFGLERLLMIREGTQHVQSMAR 275 (288)
T ss_dssp EEEEEEEEESCTTTT----------------------TTTCCSCEEEEEEEHHHHHHHHHTCSCGGGGSS
T ss_pred EEEEEEEecHHHHHH----------------------hcCCCCCeEEEEECHHHHHHHHcCCchhhcCCC
Confidence 999999976665421 578 48999999999999999999999998754
|
| >1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=9.2e-14 Score=144.26 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhHhCCcEEEecceeecc-----C--CCC--C----ccceeecC-CC-----------Cceecc--cChhh
Q 008808 252 SQVGNIFRQFLLSENFVEIHTPKLIAG-----S--SEG--G----SAVFRLDY-KG-----------QSACLA--QSPQL 304 (553)
Q Consensus 252 s~i~~~iR~fl~~~gF~EV~TP~l~~~-----~--~eg--g----a~~F~v~~-~~-----------~~~~L~--~SPql 304 (553)
+++++.||++|...||.||.+|.+... + .+. . .+.|.+.. .. ....|| .||.+
T Consensus 104 ~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp~l 183 (350)
T 1b7y_A 104 TLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQ 183 (350)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTHHH
T ss_pred HHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchHHH
Confidence 456788999999999999999988541 1 111 1 22455431 11 333455 56655
Q ss_pred HhhhcccCC--CceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHHHHH
Q 008808 305 HKQMSICGD--FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTI 365 (553)
Q Consensus 305 ~lk~li~~g--~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll~~i 365 (553)
. ++|..+ --|+||||+|||+++. +.+|+|||+|||+++... -++.+++.+++.++..+
T Consensus 184 l--r~l~~~~~piriFEiGrVFR~d~~-d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~l 244 (350)
T 1b7y_A 184 V--RYMVAHTPPFRIVVPGRVFRFEQT-DATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQAL 244 (350)
T ss_dssp H--HHHHHCCSSEEEEEEEEEECCCCC-CSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred H--HHHHhcCCCeeEEEeeeEEECCCC-CCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhh
Confidence 4 455432 3589999999999875 678999999999998764 25777777777666543
|
| >2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=141.05 Aligned_cols=111 Identities=9% Similarity=0.116 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhHhCCcEEEecceeecc-----C--CC--CCcc----ceeecCCCCceecccChhhHhhhcccCC----
Q 008808 251 QSQVGNIFRQFLLSENFVEIHTPKLIAG-----S--SE--GGSA----VFRLDYKGQSACLAQSPQLHKQMSICGD---- 313 (553)
Q Consensus 251 Rs~i~~~iR~fl~~~gF~EV~TP~l~~~-----~--~e--gga~----~F~v~~~~~~~~L~~SPql~lk~li~~g---- 313 (553)
.+++.+.||++|..+||.||++|.+... + .+ ..|. +|.+ ....+||+|.-..+..+++.+
T Consensus 55 ~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l---~e~~vLRtsl~p~ll~~l~~N~~~~ 131 (294)
T 2rhq_A 55 LTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYI---TDEILMRTHTSPVQARTMEKRNGQG 131 (294)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBS---SSSEEECSSSHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEE---cCcceeeccCHHHHHHHHHhcCCCC
Confidence 4567888999999999999999988542 1 10 0010 2333 255688888888878888877
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHHHHH
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTI 365 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll~~i 365 (553)
..|+||||+|||+++. +.+|+|||+||+++++.. .++.+++.+++.++..+
T Consensus 132 ~~riFEiG~Vfr~d~~-d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l 183 (294)
T 2rhq_A 132 PVKIICPGKVYRRDSD-DATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKL 183 (294)
T ss_dssp CEEEEEEEEEECCCCC-BTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CccEEEEcCEEecCCC-CCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 7899999999999864 567999999999999862 25788888877776543
|
| >3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-11 Score=127.49 Aligned_cols=106 Identities=11% Similarity=0.161 Sum_probs=68.9
Q ss_pred HHHHHHHHHhHhCCcEEEecceeeccC--------C-CCCcc----ceeecCCCCceecc--cChhhHhhhcccCCC--c
Q 008808 253 QVGNIFRQFLLSENFVEIHTPKLIAGS--------S-EGGSA----VFRLDYKGQSACLA--QSPQLHKQMSICGDF--G 315 (553)
Q Consensus 253 ~i~~~iR~fl~~~gF~EV~TP~l~~~~--------~-egga~----~F~v~~~~~~~~L~--~SPql~lk~li~~g~--~ 315 (553)
.+.+.||++|...||.|+.+|.+.... . ++.|+ .|.+ +....|| +||.+ -+.|..+- -
T Consensus 111 ~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i---~e~~vLRThtsp~~--lr~l~~~~~pi 185 (327)
T 3pco_A 111 RTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF---DTTRLLRTQTSGVQ--IRTMKAQQPPI 185 (327)
T ss_dssp HHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBS---SSSCEECSCTHHHH--HHHHTTCCSSC
T ss_pred HHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEe---CCCceecccCCHHH--HHHHHhCCCCe
Confidence 456778999999999999999875321 0 11111 2333 3444565 55655 23344433 3
Q ss_pred eeEEEeceecCCCCCCCCCcCcccceeEEecc-ccCHHHHHHHHHHHHHHH
Q 008808 316 RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI-KKHYSEVMDIVDRLFVTI 365 (553)
Q Consensus 316 rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~-~~~~~~~m~~~e~ll~~i 365 (553)
|+||+|+|||++ . +.+|+|+|+|+|..+.. .-++.++..+++.++..+
T Consensus 186 rifeiGrVyR~d-~-d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~l 234 (327)
T 3pco_A 186 RIIAPGRVYRND-Y-DQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNF 234 (327)
T ss_dssp CBCCEECCBCSC-C-BTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred eEEeeccEEecC-C-CcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 999999999998 3 78999999999976542 123666666666555543
|
| >3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.8e-11 Score=127.46 Aligned_cols=46 Identities=22% Similarity=0.318 Sum_probs=33.7
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHH
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDR 360 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ 360 (553)
--|+|+||+|||+|.. +.+|+|+|+|+|..+.-. -++.++..+++.
T Consensus 347 PiriFeiGrVFR~d~~-DatHlpeFhQlegl~~~~~v~f~dLKg~Le~ 393 (508)
T 3l4g_A 347 PVKYFSIDRVFRNETL-DATHLAEFHQIEGVVADHGLTLGHLMGVLRE 393 (508)
T ss_dssp CEEEEEEEEEECCSCC-CSSSCSEEEEEEEEEEEESCCHHHHHHHHHH
T ss_pred CceEEEEccEEecCCC-CCCcCCeEEEEEEEEECCCCCHHHHHHHHHH
Confidence 3589999999999985 789999999999876421 134444444433
|
| >2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2e-07 Score=100.96 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=33.9
Q ss_pred ceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHH
Q 008808 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLF 362 (553)
Q Consensus 315 ~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll 362 (553)
-|+||||+|||.+...+..|.+||+||+..+... .++.++..+++.++
T Consensus 206 vrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL 254 (534)
T 2du3_A 206 IKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALL 254 (534)
T ss_dssp EEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHH
T ss_pred eeEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4899999999987531457999999999987642 13555555554443
|
| >3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A | Back alignment and structure |
|---|
Probab=98.60 E-value=9.5e-07 Score=93.71 Aligned_cols=91 Identities=12% Similarity=0.181 Sum_probs=58.8
Q ss_pred HHHHHHHHhHhC--------CcEEEec-ceeecc---------CCCCCccce-eecCCCCceeccc--ChhhHhhhcccC
Q 008808 254 VGNIFRQFLLSE--------NFVEIHT-PKLIAG---------SSEGGSAVF-RLDYKGQSACLAQ--SPQLHKQMSICG 312 (553)
Q Consensus 254 i~~~iR~fl~~~--------gF~EV~T-P~l~~~---------~~egga~~F-~v~~~~~~~~L~~--SPql~lk~li~~ 312 (553)
+.+.||++|... ||.|+.+ |.+.+. ..++-|+.- .+-|.+...-||+ ||-+.. +|..
T Consensus 53 ~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi~~~~vLRThts~~~~~--~l~~ 130 (415)
T 3cmq_A 53 IKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQWD--LLHA 130 (415)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBSSSSEEECSSGGGGHHH--HHHT
T ss_pred HHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEecCCeEEcCCCcHHHHH--HHHH
Confidence 455567777665 8999999 666432 111222211 1113455566775 454433 3455
Q ss_pred CCceeEEEeceecCCCCCCCCCcCcccceeEEecc
Q 008808 313 DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347 (553)
Q Consensus 313 g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~ 347 (553)
+..|+|++|.|||.+.. +..|.|+|.|+|--.-|
T Consensus 131 ~~~k~~~~G~VyR~D~~-da~h~n~fhQ~egv~lf 164 (415)
T 3cmq_A 131 GLDAFLVVGDVYRRDQI-DSQHYPIFHQLEAVRLF 164 (415)
T ss_dssp TCSEEEEEEEEECCCCC-BTTBCSEEEEEEEEEEE
T ss_pred CCCCEEEeeeEEeccch-hhhhhHHhcCCCcEEEE
Confidence 67799999999999976 78999999999965444
|
| >3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.8e-06 Score=88.83 Aligned_cols=101 Identities=18% Similarity=0.174 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC------CCCccceee-cCCCCceecccC--hhhH---hhhcc-cCC
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS------EGGSAVFRL-DYKGQSACLAQS--PQLH---KQMSI-CGD 313 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~------egga~~F~v-~~~~~~~~L~~S--Pql~---lk~li-~~g 313 (553)
-.+++..|.+.+|+.|...||.||.||++..... ....+.|.+ +--|..+.||-- |.+. .+.+- ...
T Consensus 23 ~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~~ 102 (400)
T 3od1_A 23 WYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKLLDQQGNTLVLRPDMTAPIARLVASSLKDRAY 102 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEEECTTSCEEEECSCSHHHHHHHHHHHCSSSCS
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEEECCCCCEEEECCCCHHHHHHHHHhhcccCCC
Confidence 3567888999999999999999999999954321 112235665 334677777632 2221 11111 122
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEeccc
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK 348 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~ 348 (553)
.-|.|+||+|||+|... .-+.-||+|+++|.--.
T Consensus 103 P~r~~y~g~vfR~e~~~-~gR~Ref~Q~g~ei~G~ 136 (400)
T 3od1_A 103 PLRLAYQSNVYRAQQNE-GGKPAEFEQLGVELIGD 136 (400)
T ss_dssp CEEEEEEEEEECCCC----CCCSEEEEEEEEEESC
T ss_pred CeEEEEEcCEEeCCCCC-CCCCCccEEeEEEEECC
Confidence 45999999999999763 34668999999997543
|
| >3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.57 E-value=7.4e-07 Score=93.44 Aligned_cols=116 Identities=14% Similarity=0.124 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccC-----CC-CC-ccceee-cCCCCceecccC--hhhHh---hhcc-cCC
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS-----SE-GG-SAVFRL-DYKGQSACLAQS--PQLHK---QMSI-CGD 313 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~-----~e-gg-a~~F~v-~~~~~~~~L~~S--Pql~l---k~li-~~g 313 (553)
.+++..|.+.+|+.|...||.||.||++.... .+ .. .+.|.+ +--|..+.||-- |.+.. +.+- ...
T Consensus 37 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~~ 116 (373)
T 3rac_A 37 AKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRLFDGGGDAVALRPEMTPSIARMAAPRVAAGRT 116 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBCCCCSSSCEEECSSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCccchhceEEEECCCCCEEEECCcCHHHHHHHHHhccccCCC
Confidence 46788899999999999999999999986321 11 12 345654 334567777632 22221 1110 123
Q ss_pred CceeEEEeceecCCCCC-----CCCCcCcccceeEEecccc-CH---HHHHHHHHHHHH
Q 008808 314 FGRVFETGPVFRAEDSY-----THRHLCEFTGLDVEMEIKK-HY---SEVMDIVDRLFV 363 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~-----t~rHl~EFt~lE~e~a~~~-~~---~~~m~~~e~ll~ 363 (553)
.-|.|+||+|||+|... ..-+.-||+|+++|.--.. +. -+++.++.+++.
T Consensus 117 P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaEvi~l~~~~l~ 175 (373)
T 3rac_A 117 PIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMDVLRLLHEASA 175 (373)
T ss_dssp CCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHHHHHHHHHHHH
Confidence 57999999999999751 2335689999999974332 11 245555555443
|
| >3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.4e-06 Score=93.67 Aligned_cols=99 Identities=15% Similarity=0.176 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccCC---CCCc----cceee-cCCCCceecccC--hhhH---hhhccc-CC
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGGS----AVFRL-DYKGQSACLAQS--PQLH---KQMSIC-GD 313 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egga----~~F~v-~~~~~~~~L~~S--Pql~---lk~li~-~g 313 (553)
.+++..|.+.+|+.|...||.||.||++..... ..|. ..|.+ +--|..+.||-- |.+. .+.... ..
T Consensus 43 ~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~~ 122 (456)
T 3lc0_A 43 MRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKGGHRVALRPEMTPSLARLLLGKGRSLLL 122 (456)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSSSCEEEECSCSHHHHHHHHHHSCTTCCS
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcCCCCEEecCCcCHHHHHHHHHhcCcccCC
Confidence 467889999999999999999999999864321 1122 25654 334677777632 2222 111110 11
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEecc
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~ 347 (553)
.-|.|+||+|||+|... .-+.-||+|+++|.--
T Consensus 123 P~r~~y~g~vfR~e~~~-~gR~ReF~Q~g~ei~G 155 (456)
T 3lc0_A 123 PAKWYSIPQCWRYEAIT-RGRRREHYQWNMDIVG 155 (456)
T ss_dssp SEEEEECCEEECCCC------CCEEEEEEEEEES
T ss_pred CEEEEEeccEEecCCCC-CCCccceEEEEEEEEc
Confidence 46999999999999763 3456899999999743
|
| >2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.5e-06 Score=92.51 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=32.0
Q ss_pred ceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHH
Q 008808 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRL 361 (553)
Q Consensus 315 ~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~l 361 (553)
-|+||||+|||++...+.+|.+||+||+.-+... -++.|+...++.+
T Consensus 218 vrlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~l 265 (549)
T 2du7_A 218 LKLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGL 265 (549)
T ss_dssp EEEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred eEEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHH
Confidence 4899999999987531346999999999876532 1344444444443
|
| >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.25 E-value=2.2e-05 Score=85.79 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=33.5
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHH
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLF 362 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll 362 (553)
--|+||||+|||++...+.+|.+||.||+.-+... -++.|+...++.++
T Consensus 224 pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL 273 (648)
T 2odr_B 224 PFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLL 273 (648)
T ss_dssp CEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred CeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 35899999999986531457999999999876532 13555554444443
|
| >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.3e-05 Score=85.87 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=33.5
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHH
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLF 362 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll 362 (553)
--|+||||+|||++...+.+|.+||.||+.-+... -++.|+...++.++
T Consensus 224 pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL 273 (685)
T 2odr_D 224 PFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLL 273 (685)
T ss_dssp CEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred CeEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 35899999999986531457999999999876532 13555554444443
|
| >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.4e-05 Score=85.68 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=33.5
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHH
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLF 362 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll 362 (553)
--|+||||+|||++...+.+|.+||.||+.-+... -++.|+...++.++
T Consensus 224 pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL 273 (665)
T 2odr_A 224 PFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLL 273 (665)
T ss_dssp CEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred CeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 35899999999986531457999999999876532 13555554444443
|
| >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.20 E-value=3e-05 Score=85.18 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=33.5
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHH
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLF 362 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll 362 (553)
--|+||||+|||++...+.+|.+||.||+.-+... -++.|+...++.++
T Consensus 224 pvRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL 273 (701)
T 2odr_C 224 PFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLL 273 (701)
T ss_dssp CEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred CeEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 35899999999986531457999999999876532 13555555444443
|
| >2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.19 E-value=6.9e-06 Score=87.46 Aligned_cols=118 Identities=13% Similarity=0.157 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----C---CCC-ccceeecCCCCceecccChh-----hHhhhcccC
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----S---EGG-SAVFRLDYKGQSACLAQSPQ-----LHKQMSICG 312 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~---egg-a~~F~v~~~~~~~~L~~SPq-----l~lk~li~~ 312 (553)
.-.+++..|.+++|+.+...||.||.||.|.... + +.. ...|.+. +..+||+-..+ +|.+.++..
T Consensus 170 ~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--~~~l~LrPt~e~~i~~~~~~~i~s~ 247 (425)
T 2dq3_A 170 WGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCE--RDNLYLIPTAEVPLTNLYREEILKE 247 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCT--TTCCEECSSTHHHHHGGGTTEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChhhheEec--CCeEEEcCCCcHHHHHHHHhhcccc
Confidence 3456789999999999999999999999997432 1 111 1245443 67788884443 455544432
Q ss_pred -C-CceeEEEeceecCCCCCCC------CCcCcccceeEEeccccCHHHHHHHHHHHHHHHHH
Q 008808 313 -D-FGRVFETGPVFRAEDSYTH------RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFD 367 (553)
Q Consensus 313 -g-~~rVfeIg~~FR~E~~~t~------rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~ 367 (553)
. .-|+|++|+|||+|.+... --..||+|+|++. |.. -++..+..++++..+..
T Consensus 248 ~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~-f~~-pe~s~~~~~e~i~~~~~ 308 (425)
T 2dq3_A 248 ENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVK-IVH-PDTSYDELEKLVKDAEE 308 (425)
T ss_dssp TTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEE-EEC-GGGHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEE-ECC-HHHHHHHHHHHHHHHHH
Confidence 2 4699999999999974211 1346999999975 443 35566666666654443
|
| >1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=6e-06 Score=87.29 Aligned_cols=115 Identities=19% Similarity=0.177 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCC-----ccceeecCCCCceecccChhhH-----hhhcccC-
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGG-----SAVFRLDYKGQSACLAQSPQLH-----KQMSICG- 312 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egg-----a~~F~v~~~~~~~~L~~SPql~-----lk~li~~- 312 (553)
-.+++..|.+.+|+.|...||.||.||+|.... ..|. ...|.++--+..++|+-..+.. .+.+...
T Consensus 29 g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s~~ 108 (401)
T 1evl_A 29 GWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYR 108 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCEEEETTEEEEECSCSHHHHHHHHTSSCCBGG
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEeEecCCceEEEcCCCCHHHHHHHHhhhhhhh
Confidence 457788999999999999999999999997532 0121 1345544456788998665533 3322211
Q ss_pred C-CceeEEEeceecCCCCCCCC----CcCcccceeEEeccccCHHHHHHHHHHHHHH
Q 008808 313 D-FGRVFETGPVFRAEDSYTHR----HLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (553)
Q Consensus 313 g-~~rVfeIg~~FR~E~~~t~r----Hl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~ 364 (553)
. .-|+|+||+|||+|.+ +.+ -..||+|+|+|. |. +..++....++++..
T Consensus 109 ~lP~r~~~~g~~fR~E~~-~p~~Gl~R~reF~q~d~~~-f~-~~~~~~~e~~e~i~~ 162 (401)
T 1evl_A 109 DLPLRMAEFGSCHRNEPS-GSLHGLMRVRGFTQDDAHI-FC-TEEQIRDEVNGCIRL 162 (401)
T ss_dssp GCSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEE-EE-CGGGHHHHHHHHHHH
T ss_pred hCChhhccccceecCCCC-cccccccccCcEEecceEE-eC-CHHHHHHHHHHHHHH
Confidence 1 2599999999999985 222 347999999994 65 345555544455443
|
| >1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=5e-06 Score=88.23 Aligned_cols=102 Identities=19% Similarity=0.232 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----CCCCc------cceee-cCCCCceecccChhh-----Hhhhcc
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEGGS------AVFRL-DYKGQSACLAQSPQL-----HKQMSI 310 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~egga------~~F~v-~~~~~~~~L~~SPql-----~lk~li 310 (553)
-.+++..|.+.+|+.|...||.||.||+|.... +-||. ..|.+ +--|..++||--... |.+...
T Consensus 15 ~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g~~~~Lrp~~t~~~~r~~~~~~~ 94 (420)
T 1qe0_A 15 DSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKM 94 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCSHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCCCEEEeCCCChHHHHHHHHhccc
Confidence 456888999999999999999999999997532 21121 24544 223577888743322 222222
Q ss_pred c---CCCceeEEEeceecCCCCCCCCCcCcccceeEEecccc
Q 008808 311 C---GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK 349 (553)
Q Consensus 311 ~---~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~ 349 (553)
. ...-|+|+||+|||+|... .-+.-||+|+|+|.-...
T Consensus 95 ~~~~~lP~r~~~~g~vfR~E~~~-~gR~reF~q~~~e~~~~~ 135 (420)
T 1qe0_A 95 QGNPNQPIKLYYNGPMFRYERKQ-KGRYRQFNQFGVEAIGAE 135 (420)
T ss_dssp GGCSSCSEEEEEEEEEECC--------CCEEEEEEEEEESCC
T ss_pred cccCCCCeEEEEecCEeecCCCc-CCCcccEEEeeEEEECCC
Confidence 2 1246999999999999653 345689999999975543
|
| >2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=2.3e-05 Score=84.30 Aligned_cols=113 Identities=15% Similarity=0.103 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----CC----CCccceee-cCCCCceecccC-----hhhHhhhccc
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SE----GGSAVFRL-DYKGQSACLAQS-----PQLHKQMSIC 311 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~e----gga~~F~v-~~~~~~~~L~~S-----Pql~lk~li~ 311 (553)
.-.+++.+|.+.+|+.|...||.||.||+|.... +. -+...|.+ +--|..++|+.. +.++...+..
T Consensus 65 ~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~d~~~~~~~LrPt~ee~t~~i~r~~~~s 144 (458)
T 2i4l_A 65 LGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRAYIKS 144 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEECTTCCEEEECSCCHHHHHHHHHHHCCB
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEEEeCCCCeEEECCCChHHHHHHHHHHHhh
Confidence 4567889999999999999999999999997532 11 11234554 334678899863 2344433221
Q ss_pred C--CCceeEEEeceecCCCCCCCC----CcCcccceeEEeccccCHHHHHHHHHHH
Q 008808 312 G--DFGRVFETGPVFRAEDSYTHR----HLCEFTGLDVEMEIKKHYSEVMDIVDRL 361 (553)
Q Consensus 312 ~--g~~rVfeIg~~FR~E~~~t~r----Hl~EFt~lE~e~a~~~~~~~~m~~~e~l 361 (553)
. ---|+|+||+|||+|-. . + ...||+|+|+|.-. .+..++-..+..|
T Consensus 145 ~~~lP~rl~~ig~~fR~E~~-p-~~Gl~R~REF~q~d~~~f~-~~~~~ad~e~~~~ 197 (458)
T 2i4l_A 145 YKSLPLNLYHIQWKFRDEQR-P-RFGVMRGREFLMKDAYSFD-VDEAGARKSYNKM 197 (458)
T ss_dssp GGGCSEEEEEEEEEECCCSS-C-BTGGGBCSEEEEEEEEEEE-SSHHHHHHHHHHH
T ss_pred ccccCeeeEEecCEeeCCCC-C-CCCcccccceEEeEEEEEE-CCHHHHHHHHHHH
Confidence 1 12599999999999942 2 3 34899999999753 3445444444433
|
| >1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=4.7e-05 Score=78.88 Aligned_cols=100 Identities=18% Similarity=0.176 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---------C-CCCccceee-cCCCCceecccChhhHhhhccc----
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---------S-EGGSAVFRL-DYKGQSACLAQSPQLHKQMSIC---- 311 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---------~-egga~~F~v-~~~~~~~~L~~SPql~lk~li~---- 311 (553)
-.+++..|.+.+|+.|...||.||.||++.... . ....+.|.+ +--|+.+.||--.-...=++++
T Consensus 35 ~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g~~l~LRpd~T~~~aR~~~~~~~ 114 (344)
T 1z7m_A 35 QVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYDFTLPLVRLYSQIKD 114 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCEEEECCCSHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCCCEEecCCCCcHHHHHHHHhcCC
Confidence 356788999999999999999999999986421 1 112235654 3356777887322111111221
Q ss_pred CCCceeEEEeceecCCCCCCCCCcCcccceeEEecc
Q 008808 312 GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347 (553)
Q Consensus 312 ~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~ 347 (553)
...-|.|+||+|||+|... .-+.-||+|+++|.--
T Consensus 115 ~~P~rl~y~g~vfR~e~p~-~gR~REF~Q~g~ei~g 149 (344)
T 1z7m_A 115 STSARYSYFGKIFRKEKRH-KGRSTENYQIGIELFG 149 (344)
T ss_dssp CCCEEEEEEEECCCCCC--------CCEEEEEEEES
T ss_pred CCCeEEEEECcEEccCCCC-CCCcceeEEEEEEEEc
Confidence 1346999999999999763 4467899999999743
|
| >1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=6.9e-05 Score=79.89 Aligned_cols=102 Identities=13% Similarity=0.080 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---C-CC---Cccceee-cCCCCceecccChhhHhhhcccC-----C
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---S-EG---GSAVFRL-DYKGQSACLAQSPQLHKQMSICG-----D 313 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~-eg---ga~~F~v-~~~~~~~~L~~SPql~lk~li~~-----g 313 (553)
-.+++..|.+.+|+-|...||.||.||++.... . -| +.+.|.+ +--|+.+.||--.-...=+.++. .
T Consensus 19 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~~g~~l~LrPd~t~~~aR~~~~~~~~~l 98 (434)
T 1wu7_A 19 DMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTLIPEATPSTVRMVTSRKDLQR 98 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTTSCEEEECSCSHHHHHHHHTTCTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEECCCCCEEEeCCCChHHHHHHHHhcCCCCC
Confidence 356788999999999999999999999997532 1 11 1235665 33567788874322222222221 2
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEecccc
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK 349 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~ 349 (553)
.-|.|+||++||+|... .-+.-||+|+++|.-..+
T Consensus 99 P~rl~~~g~vfR~erp~-~gR~REF~Q~d~ei~g~~ 133 (434)
T 1wu7_A 99 PLRWYSFPKVWRYEEPQ-AGRYREHYQFNADIFGSD 133 (434)
T ss_dssp SEEEEECCEEECCCCSC-SSCCSEEEEEEEEEESCC
T ss_pred CeEEEEEcCeecCCCCC-CCCccceEEeeEEEEcCC
Confidence 35999999999999753 335689999999975443
|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=3e-05 Score=86.88 Aligned_cols=116 Identities=16% Similarity=0.093 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCCc-----cceee-cCCC-CceecccChhh-----Hhhhcc
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGS-----AVFRL-DYKG-QSACLAQSPQL-----HKQMSI 310 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egga-----~~F~v-~~~~-~~~~L~~SPql-----~lk~li 310 (553)
.-.+++..|.+.+|+.+...||.||.||.|.... ..|+. ..|.+ +--+ ..++|+--..- |.+.+.
T Consensus 269 ~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~~d~~~~~~~~LrP~~~~~~~~~~~~~~~ 348 (645)
T 1nyr_A 269 NGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPH 348 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEETTTEEEEECSSSHHHHHHHHHTSCC
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCcceeEecCCCeEEEeCCCCCHHHHHHHHhhhh
Confidence 3467899999999999999999999999997532 01221 23443 2235 67888754332 333221
Q ss_pred cC-C-CceeEEEeceecCCCCCCCCC----cCcccceeEEeccccCHHHHHHHHHHHHHH
Q 008808 311 CG-D-FGRVFETGPVFRAEDSYTHRH----LCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (553)
Q Consensus 311 ~~-g-~~rVfeIg~~FR~E~~~t~rH----l~EFt~lE~e~a~~~~~~~~m~~~e~ll~~ 364 (553)
.. . .-|+|+||+|||+|.+ ..+| .-||||+|+|. |. +-+.+.+...+++..
T Consensus 349 syr~LPlrl~~~g~~fR~E~~-~~~~GL~R~ReF~Q~d~~~-f~-~~~~~~d~~~e~i~~ 405 (645)
T 1nyr_A 349 SYRELPIRIAELGTMHRYEAS-GAVSGLQRVRGMTLNDSHI-FV-RPDQIKEEFKRVVNM 405 (645)
T ss_dssp BGGGCCEEEEEEEEEECCCCT-TTCBTTTBCSEEEEEEEEE-EE-CGGGHHHHHHHHHHH
T ss_pred hccCCCeEEEEeccEEecCCC-ccccCcceeeeEEEccEEE-Ec-CHHHHHHHHHHHHHH
Confidence 11 1 2499999999999986 2333 47999999997 65 345555554554443
|
| >1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00017 Score=76.64 Aligned_cols=113 Identities=12% Similarity=0.163 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----CCCC-----ccceeecCCCCceecccChhhHhhhcccC-----
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEGG-----SAVFRLDYKGQSACLAQSPQLHKQMSICG----- 312 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~egg-----a~~F~v~~~~~~~~L~~SPql~lk~li~~----- 312 (553)
-.+++..|.+++|+.+.+.||.||.||.|.... + |. ...|.+. +.++||+-..+..+-.++..
T Consensus 165 ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~s-G~~~~f~~emy~~~--d~~l~L~Pt~e~~~~~~~~~~~~s~ 241 (421)
T 1ses_A 165 LALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGT-GHFPAYRDQVWAIA--ETDLYLTGTAEVVLNALHSGEILPY 241 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHH-TCTTTTGGGSCBBT--TSSEEECSSTHHHHHHTTTTCEEEG
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhc-CCCCcCchhcEEEc--CCeEEEeecCcHHHHHHhcccccCc
Confidence 456788999999999999999999999996431 1 21 1244443 46788886665444333322
Q ss_pred -C-CceeEEEeceecCCCC------CCCCCcCcccceeEEeccccC-HHHHHHHHHHHHH
Q 008808 313 -D-FGRVFETGPVFRAEDS------YTHRHLCEFTGLDVEMEIKKH-YSEVMDIVDRLFV 363 (553)
Q Consensus 313 -g-~~rVfeIg~~FR~E~~------~t~rHl~EFt~lE~e~a~~~~-~~~~m~~~e~ll~ 363 (553)
. --|+|++|+|||+|-+ .+.--.-||+|.|++.. ... .++..+..++++.
T Consensus 242 ~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f-~~p~~e~s~~~~~e~~~ 300 (421)
T 1ses_A 242 EALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVL-TEASLEASDRAFQELLE 300 (421)
T ss_dssp GGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEE-ECSCHHHHHHHHHHHHH
T ss_pred hhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEE-eCCCHHHHHHHHHHHHH
Confidence 1 2499999999999952 11113469999999864 333 3666666666554
|
| >1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00011 Score=79.36 Aligned_cols=115 Identities=13% Similarity=0.085 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC---CCC------ccceeecCC-----CCceecccChh-----hHhh
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG------SAVFRLDYK-----GQSACLAQSPQ-----LHKQ 307 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egg------a~~F~v~~~-----~~~~~L~~SPq-----l~lk 307 (553)
-.+++..|.+.+|+.|...||.||.||+|..... ++| ...|.+..- +..++||--.+ +|.+
T Consensus 43 g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~~~ 122 (477)
T 1hc7_A 43 GYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSK 122 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHHHh
Confidence 3567889999999999999999999999975431 122 124555432 56789986554 4555
Q ss_pred hcccC-C-CceeEEEeceecCCCC-CCCCCcCcccceeEEeccccCHHHHHHHHHHHH
Q 008808 308 MSICG-D-FGRVFETGPVFRAEDS-YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLF 362 (553)
Q Consensus 308 ~li~~-g-~~rVfeIg~~FR~E~~-~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll 362 (553)
.+... . --|+|+||+|||+|.. +..--.-||+|+|.+..+. +..+....+..|+
T Consensus 123 ~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~-~~~~ad~E~~~~l 179 (477)
T 1hc7_A 123 WIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHA-TREEAEEEVRRML 179 (477)
T ss_dssp HCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEES-SHHHHHHHHHHHH
T ss_pred hhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeC-CHHHHHHHHHHHH
Confidence 44322 2 2599999999999953 2211346999999998776 4566655555554
|
| >2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=7.3e-05 Score=82.55 Aligned_cols=113 Identities=17% Similarity=0.161 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC---CCC-----ccceee-cCCCCceecccChh-----hHhhhccc
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG-----SAVFRL-DYKGQSACLAQSPQ-----LHKQMSIC 311 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egg-----a~~F~v-~~~~~~~~L~~SPq-----l~lk~li~ 311 (553)
.-.+++..|.+.+|+.|...||.||.||+|..... .|. ...|.+ +--+..++||--.+ +|...+..
T Consensus 45 ~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s 124 (572)
T 2j3l_A 45 LANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRDEINS 124 (572)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEEECTTCCEEEECSCCHHHHHHHHHHHCCB
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEEecCCCCeEEEccccHHHHHHHHHhhccC
Confidence 34678899999999999999999999999975320 021 234554 33467889974442 34443321
Q ss_pred C-C-CceeEEEeceecCCCCCCCCC----cCcccceeEEeccccCHHHHHHHHHHH
Q 008808 312 G-D-FGRVFETGPVFRAEDSYTHRH----LCEFTGLDVEMEIKKHYSEVMDIVDRL 361 (553)
Q Consensus 312 ~-g-~~rVfeIg~~FR~E~~~t~rH----l~EFt~lE~e~a~~~~~~~~m~~~e~l 361 (553)
. . --|+|+||+|||+|.+ . +| .-||+|+|.|.- ..+-.++...++.+
T Consensus 125 ~~~lP~r~~~~g~~fR~E~~-~-~~Gl~R~ReF~q~d~~~f-~~~~~~~~~e~~~~ 177 (572)
T 2j3l_A 125 YKRLPLNLYQIQTKYRDEKR-S-RSGLLRGREFIMKDGYSF-HADEASLDQSYRDY 177 (572)
T ss_dssp GGGCCEEEEEEEEEECCCSS-C-CTGGGSCSEEEEEEEEEE-ESSHHHHHHHHHHH
T ss_pred hhhcCHhhheecCeeccCcC-c-ccCccccceeEEeeeEEE-cCCHHHHHHHHHHH
Confidence 1 2 2499999999999986 3 33 479999999974 33455555555443
|
| >2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00011 Score=78.79 Aligned_cols=114 Identities=11% Similarity=0.170 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCCcc-----ceeecCCCCceecccChhhH-----hhhcccC-
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGSA-----VFRLDYKGQSACLAQSPQLH-----KQMSICG- 312 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egga~-----~F~v~~~~~~~~L~~SPql~-----lk~li~~- 312 (553)
-.+++..|.+++++.+.+.||.||.||.|.... ..|... .|.+. +..+||+-..+.. .+..+..
T Consensus 192 ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--d~~l~LrPt~e~~~~~~~~~~~~s~~ 269 (455)
T 2dq0_A 192 IVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKVE--DEDLYLIPTAEHPLAGMHANEILDGK 269 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHHTCCBBT--TSSCEECSSTHHHHHHTTTTEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChHhhCeec--CCcEEEcCcCcHHHHHHHHhCccCch
Confidence 456788999999999999999999999997532 113322 34432 5678898665443 3322221
Q ss_pred C-CceeEEEeceecCCCCC------CCCCcCcccceeEEeccccCHHHHHHHHHHHHHH
Q 008808 313 D-FGRVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (553)
Q Consensus 313 g-~~rVfeIg~~FR~E~~~------t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~ 364 (553)
. --|+|++|+|||+|-+. +.--.-||+|.|++ .|.. -++..+..++++..
T Consensus 270 ~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~-~f~~-pe~s~~~~~e~l~~ 326 (455)
T 2dq0_A 270 DLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQF-VYSR-PEESWEWHEKIIRN 326 (455)
T ss_dssp TCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEE-EEEC-TTTHHHHHHHHHHH
T ss_pred hCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEE-EecC-HHHHHHHHHHHHHH
Confidence 2 25999999999999741 11134699999998 4654 46777766666643
|
| >1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A | Back alignment and structure |
|---|
Probab=97.73 E-value=8.9e-05 Score=78.60 Aligned_cols=100 Identities=21% Similarity=0.317 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CC-CC------ccceee-cCCCCceeccc--ChhhHhhhc---c
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SE-GG------SAVFRL-DYKGQSACLAQ--SPQLHKQMS---I 310 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~e-gg------a~~F~v-~~~~~~~~L~~--SPql~lk~l---i 310 (553)
-.+++..|.+.+|+-|...||.||.||++.... .. |. .+.|.+ +--|+.+.||- .|.+..-.+ +
T Consensus 16 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t~~~ar~~~~~~~ 95 (421)
T 1h4v_B 16 ELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPEGTAAMVRAYLEHGM 95 (421)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCCCEEeeCCcchHHHHHHHHhccc
Confidence 356788999999999999999999999996532 11 21 135665 33567788873 222222111 1
Q ss_pred c--CCCceeEEEeceecCCCCCCCCCcCcccceeEEecc
Q 008808 311 C--GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347 (553)
Q Consensus 311 ~--~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~ 347 (553)
. .-.-|.|+||++||+|... .-+.-||+|+++|.-.
T Consensus 96 ~~~~lP~rl~~~g~vfR~e~p~-~gR~REf~Q~g~e~~g 133 (421)
T 1h4v_B 96 KVWPQPVRLWMAGPMFRAERPQ-KGRYRQFHQVNYEALG 133 (421)
T ss_pred cccCCCeEEEEecCeecCCCCC-CCCcccEEEccEEEEC
Confidence 1 1135999999999999753 3356899999999743
|
| >3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00023 Score=77.67 Aligned_cols=116 Identities=11% Similarity=0.153 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC--------CCCCccceeecCCCCceecccChhhHhhhcccCC----
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS--------SEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGD---- 313 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~--------~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g---- 313 (553)
.-.+++.+|++++|+.+.+.||.||.||.|.... ..-+.+.|.+. +.++||+-..+..+=.+....
T Consensus 273 ~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~--~~~~~L~PT~E~~~~~l~~~~i~s~ 350 (536)
T 3err_A 273 DLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA--ETDLYLTGTAEVVLNALHSGEILPY 350 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEET--TTTEEECSSTHHHHHHHTTTCEEEG
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEec--CCCEEEccCCcHHHHHHHhcccccH
Confidence 4568899999999999999999999999997431 11123456664 367888766554332222111
Q ss_pred ---CceeEEEeceecCCCC------CCCCCcCcccceeEEeccccC-HHHHHHHHHHHHHH
Q 008808 314 ---FGRVFETGPVFRAEDS------YTHRHLCEFTGLDVEMEIKKH-YSEVMDIVDRLFVT 364 (553)
Q Consensus 314 ---~~rVfeIg~~FR~E~~------~t~rHl~EFt~lE~e~a~~~~-~~~~m~~~e~ll~~ 364 (553)
-=|+|++|+|||+|-+ .+.-..-||||.|.+. |... +++..+..++|+..
T Consensus 351 ~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~-f~~pe~e~s~~~~e~~~~~ 410 (536)
T 3err_A 351 EALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYV-LTEASLEASDRAFQELLEN 410 (536)
T ss_dssp GGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEE-EECSCHHHHHHHHHHHHHH
T ss_pred hhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEE-EECCchHHHHHHHHHHHHH
Confidence 2489999999999962 1122456999999985 4432 24777776666643
|
| >4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.72 E-value=6.2e-05 Score=81.12 Aligned_cols=99 Identities=17% Similarity=0.220 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----CCCC------ccceee-cCC-CCceecccChhhHhhhccc---
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEGG------SAVFRL-DYK-GQSACLAQSPQLHKQMSIC--- 311 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~egg------a~~F~v-~~~-~~~~~L~~SPql~lk~li~--- 311 (553)
-.+++..|.+.+|+.|...||.||.||+|.... +-|. .+.|.+ +-- |..+.||--.-...=++++
T Consensus 45 ~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRPd~t~~~ar~~~~~~ 124 (467)
T 4e51_A 45 DAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAIEHN 124 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECSCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEeCcccHHHHHHHHHHcc
Confidence 356789999999999999999999999996432 1122 135655 334 6778887332222212211
Q ss_pred ---CCCceeEEEeceecCCCCCCCCCcCcccceeEEec
Q 008808 312 ---GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEME 346 (553)
Q Consensus 312 ---~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a 346 (553)
...-|.|+||+|||+|.+.. -+.-||+|+++|.-
T Consensus 125 ~~~~lP~r~~~~g~vfR~E~~~~-gR~ReF~Q~d~ei~ 161 (467)
T 4e51_A 125 MLYDGPKRLWYIGPMFRHERPQR-GRYRQFHQVGVEAL 161 (467)
T ss_dssp TTTTSCEEEEEEEEEECCCCC----CCSEEEEEEEEEE
T ss_pred cccCCCEEEEEEccEEccCCCCC-CCcCceEEEEEEEE
Confidence 12469999999999997643 45689999999974
|
| >3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} | Back alignment and structure |
|---|
Probab=97.71 E-value=4.3e-05 Score=82.35 Aligned_cols=117 Identities=16% Similarity=0.202 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeecc-----CCCCCcc-ceeecCC----------------CCceecccC--h
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAG-----SSEGGSA-VFRLDYK----------------GQSACLAQS--P 302 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~-----~~egga~-~F~v~~~----------------~~~~~L~~S--P 302 (553)
-.+++..|.+.+|+.|...||.||.||++... ..+.... .|.+.-. |..+.||-- |
T Consensus 25 ~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~~~~d~~~~g~~~~~~~~~~~~g~~l~LRpd~T~ 104 (465)
T 3net_A 25 EKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTV 104 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGGCC--CBEEEEEEEC----------------CCEEECSCSHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccCCCCccceEEEecccccccccccccccCCCCCEEEeCCCChH
Confidence 35678889999999999999999999998421 1122223 5665322 577788732 2
Q ss_pred hh---Hhhhcc-cCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCH-----HHHHHHHHHHHHH
Q 008808 303 QL---HKQMSI-CGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY-----SEVMDIVDRLFVT 364 (553)
Q Consensus 303 ql---~lk~li-~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~-----~~~m~~~e~ll~~ 364 (553)
.+ +.+... ....-|.|+||+|||.|... .-+.-||+|+++|.--.++. -|++.++-+++..
T Consensus 105 ~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~-~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi~l~~~~l~~ 174 (465)
T 3net_A 105 PLAAYIARHLNDLTFPFARYQMDVVFRGERAK-DGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEA 174 (465)
T ss_dssp HHHHHHHHHGGGSCSSEEEEECCEEECBC-------CCEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccCCCeEEEEeccEEecCCCC-CCCcceeEEeeEEEECCCCccchhhHHHHHHHHHHHHH
Confidence 22 222211 12235999999999999763 44568999999997433221 2455555555543
|
| >1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0001 Score=78.19 Aligned_cols=101 Identities=20% Similarity=0.228 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----CCCC------ccceee-cCCCCceecccChhhHhhhccc----
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEGG------SAVFRL-DYKGQSACLAQSPQLHKQMSIC---- 311 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~egg------a~~F~v-~~~~~~~~L~~SPql~lk~li~---- 311 (553)
-.+++..|.+.+|+-|...||.||.||++.... +.|. .+.|.+ +--|+.+.||--.-...=+.++
T Consensus 17 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t~~~aR~~~~~~~ 96 (423)
T 1htt_A 17 ETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGL 96 (423)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTSCEEEECSCSHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCCCEEEeCCCchHHHHHHHHhccc
Confidence 356788999999999999999999999997532 1121 135665 3356777787422221111111
Q ss_pred --CCCceeEEEeceecCCCCCCCCCcCcccceeEEeccc
Q 008808 312 --GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK 348 (553)
Q Consensus 312 --~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~ 348 (553)
...-|.|+||++||+|... .-+.-||+|+++|.-..
T Consensus 97 ~~~~P~rl~~~g~vfR~e~p~-~gR~Ref~Q~d~e~~g~ 134 (423)
T 1htt_A 97 LYNQEQRLWYIGPMFRHERPQ-KGRYRQFHQLGCEVFGL 134 (423)
T ss_dssp STTCCEEEEEEEEEECCCCCC-SSCCSEEEEEEEEEESC
T ss_pred ccCCCeEEEEEcCEecCCCCC-CCccceeEEeeEEEECC
Confidence 1246999999999999753 33568999999997543
|
| >3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00012 Score=78.80 Aligned_cols=119 Identities=17% Similarity=0.109 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHh-HhCCcEEEecceeeccC----C---CCC-ccceeecC---CCCceecccChh-----hHhhhc
Q 008808 247 IFRIQSQVGNIFRQFL-LSENFVEIHTPKLIAGS----S---EGG-SAVFRLDY---KGQSACLAQSPQ-----LHKQMS 309 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl-~~~gF~EV~TP~l~~~~----~---egg-a~~F~v~~---~~~~~~L~~SPq-----l~lk~l 309 (553)
-.+++..|.+++|+.+ .+.||.||.||+|.... + +.. .+.|.+.- -+..++|+--.+ +|.+.+
T Consensus 63 g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~~~ 142 (460)
T 3uh0_A 63 GAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKD 142 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHHHHhcc
Confidence 4678899999999999 99999999999996431 1 111 12455533 257788875543 333332
Q ss_pred cc-CC-CceeEEEeceecCCCCC---CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHH
Q 008808 310 IC-GD-FGRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFD 367 (553)
Q Consensus 310 i~-~g-~~rVfeIg~~FR~E~~~---t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~ 367 (553)
.. .. --|+|++|+|||+|.+. ...-.-||+|.|.+. |.. -++..+.+++++..+..
T Consensus 143 ~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~-f~~-~e~~~~e~~~~i~~~~~ 203 (460)
T 3uh0_A 143 RSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHI-FCT-PSQVKSEIFNSLKLIDI 203 (460)
T ss_dssp CBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEE-EEC-GGGHHHHHHHHHHHHHH
T ss_pred ccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEE-EcC-HHHHHHHHHHHHHHHHH
Confidence 22 11 24899999999999752 211346999999995 653 35566665555554443
|
| >1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00015 Score=77.94 Aligned_cols=116 Identities=18% Similarity=0.147 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----CCC-----CccceeecCC-----CCceecccChhh-----Hhh
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEG-----GSAVFRLDYK-----GQSACLAQSPQL-----HKQ 307 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~eg-----ga~~F~v~~~-----~~~~~L~~SPql-----~lk 307 (553)
-.+++..|.+.+|+.|...||.||.||+|.... ..| +.+.|.+..- +..++||--.+- |.+
T Consensus 37 g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~~ 116 (459)
T 1nj8_A 37 GFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKL 116 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHHHH
Confidence 356788999999999999999999999997532 112 1235665433 577888854443 444
Q ss_pred hcccC-C-CceeEEEeceecCCCCCCCC--CcCccc-ceeEEeccccCHHHHHHHHHHHHH
Q 008808 308 MSICG-D-FGRVFETGPVFRAEDSYTHR--HLCEFT-GLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 308 ~li~~-g-~~rVfeIg~~FR~E~~~t~r--Hl~EFt-~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
.+... . --|+|+||+|||+|...+.- -.-||+ |.|.+..+. +-.++...+++++.
T Consensus 117 ~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~-~~~~a~~e~~~~i~ 176 (459)
T 1nj8_A 117 WVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHS-TKEEAENQVKEAIS 176 (459)
T ss_dssp TCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEES-SHHHHHHHHHHHHH
T ss_pred hhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEEC-CHHHHHHHHHHHHH
Confidence 33221 2 24999999999999751111 246999 999997665 45666555544544
|
| >3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00036 Score=75.50 Aligned_cols=117 Identities=10% Similarity=0.082 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC-------CC-CccceeecCC---------CCceecccChhhHhhh
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-------EG-GSAVFRLDYK---------GQSACLAQSPQLHKQM 308 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-------eg-ga~~F~v~~~---------~~~~~L~~SPql~lk~ 308 (553)
.-.+++..|++++|+.+.+.||.||.||.|..... ++ +...|.+.-- +.++||+-..+..+=.
T Consensus 199 ~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~ 278 (522)
T 3vbb_A 199 VLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAA 278 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHHH
Confidence 45688999999999999999999999999964321 11 1235666432 4578998666554432
Q ss_pred cccC------C-CceeEEEeceecCCCCC------CCCCcCcccceeEEeccccCH-HHHHHHHHHHHH
Q 008808 309 SICG------D-FGRVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHY-SEVMDIVDRLFV 363 (553)
Q Consensus 309 li~~------g-~~rVfeIg~~FR~E~~~------t~rHl~EFt~lE~e~a~~~~~-~~~m~~~e~ll~ 363 (553)
+... . -=|+|++++|||+|-+. +.--.-||+|.|.+. |...- ++..+..++|+.
T Consensus 279 l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~-f~~pe~e~s~~e~e~ml~ 346 (522)
T 3vbb_A 279 LHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFV-YSSPHDNKSWEMFEEMIT 346 (522)
T ss_dssp TSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEE-EECSSTTHHHHHHHHHHH
T ss_pred HHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEE-EeCCChHHHHHHHHHHHH
Confidence 2221 1 24899999999999641 111346999999984 44321 136666666654
|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0001 Score=82.57 Aligned_cols=115 Identities=19% Similarity=0.185 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCC-----ccceeecCCCCceecccChhh-----HhhhcccC
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGG-----SAVFRLDYKGQSACLAQSPQL-----HKQMSICG 312 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egg-----a~~F~v~~~~~~~~L~~SPql-----~lk~li~~ 312 (553)
.-.+++..|.+.+|+.+.+.||.||.||.|.... ..|. ...|.++--+..++|+--.+- |.+.+...
T Consensus 269 ~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy 348 (642)
T 1qf6_A 269 DGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSY 348 (642)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEEETTEEEEECSSSHHHHHHHHTTSCEEG
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCccccccccceeeecCCceEEecCCCCHHHHHHHHhhhhhc
Confidence 4467899999999999999999999999997532 0121 224553334677888754432 33332221
Q ss_pred -C-CceeEEEeceecCCCCCCCC----CcCcccceeEEeccccCHHHHHHHHHHHHH
Q 008808 313 -D-FGRVFETGPVFRAEDSYTHR----HLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 313 -g-~~rVfeIg~~FR~E~~~t~r----Hl~EFt~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
. --|+|+||+|||+|.+ +.+ -.-||||.|.+. |. +-+++...+++++.
T Consensus 349 r~LPlr~~~~g~~fR~E~~-g~~~GL~R~ReF~q~d~~~-f~-~~~~~~~e~~~~i~ 402 (642)
T 1qf6_A 349 RDLPLRMAEFGSCHRNEPS-GSLHGLMRVRGFTQDDAHI-FC-TEEQIRDEVNGCIR 402 (642)
T ss_dssp GGCSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEE-EE-CGGGHHHHHHHHHH
T ss_pred cccCeEEEEeccEEecCCC-ccccCCceeeeEEEccEEE-Ec-CHHHHHHHHHHHHH
Confidence 1 2499999999999986 222 247999999997 65 34455444444443
|
| >1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00041 Score=75.05 Aligned_cols=117 Identities=15% Similarity=0.203 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC--------CCCc-cceeecCC-CCceecccChhhHhhhcccC----
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--------EGGS-AVFRLDYK-GQSACLAQSPQLHKQMSICG---- 312 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~--------egga-~~F~v~~~-~~~~~L~~SPql~lk~li~~---- 312 (553)
-.++..+|++++++.+.+.||.||.||.|..... .-+. +.|.+.-- +.++||+-..|..+=.+...
T Consensus 218 GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~~~~~l~L~PTaE~~~~~l~~~~i~s 297 (501)
T 1wle_A 218 GALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFEDLNLAGTAEVGLAGYFMDHSVA 297 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTTTSSSCEECSSHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecCCCCeEEECCcCcHHHHHHHhhccCC
Confidence 4577888999999999999999999999975321 1122 45666432 46789986666433222211
Q ss_pred --C-CceeEEEeceecCCCC-----CCCCCcCcccceeEEeccccCH-HHHHHHHHHHHHH
Q 008808 313 --D-FGRVFETGPVFRAEDS-----YTHRHLCEFTGLDVEMEIKKHY-SEVMDIVDRLFVT 364 (553)
Q Consensus 313 --g-~~rVfeIg~~FR~E~~-----~t~rHl~EFt~lE~e~a~~~~~-~~~m~~~e~ll~~ 364 (553)
. -=|+|++++|||+|-. .+.--.-||+|.|.+. |...- ++..+..++|+..
T Consensus 298 ~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~-f~~pe~e~s~~~~e~~l~~ 357 (501)
T 1wle_A 298 FRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFG-VTGPGLEQSSELLEEFLSL 357 (501)
T ss_dssp GGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEE-EECSSHHHHHHHHHHHHHH
T ss_pred cccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEE-EeCCcHHHHHHHHHHHHHH
Confidence 1 2599999999999954 1111246999999986 44332 6777777777653
|
| >3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00016 Score=77.68 Aligned_cols=118 Identities=11% Similarity=0.179 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC---CCC-----ccceeecCCCCceecccChhhHhhhcccC-----
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG-----SAVFRLDYKGQSACLAQSPQLHKQMSICG----- 312 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egg-----a~~F~v~~~~~~~~L~~SPql~lk~li~~----- 312 (553)
.-.+++.+|++++|+.+.++||.||.||.|..... .|. .+.|.+.--+.++||.-..+..+=.+...
T Consensus 206 ~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~~~~~~L~PTaE~~l~~l~~~~i~sy 285 (484)
T 3lss_A 206 GLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFTE 285 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESSSSCEEECSSTHHHHHHHTTTCEESC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeecCCcceEEeccCcHHHHHHHhccccch
Confidence 45688999999999999999999999999975321 111 23566643367899987766554222211
Q ss_pred -C-CceeEEEeceecCCC-CC-----CCCCcCcccceeEEeccccCHHH--HHHHHHHHHHHH
Q 008808 313 -D-FGRVFETGPVFRAED-SY-----THRHLCEFTGLDVEMEIKKHYSE--VMDIVDRLFVTI 365 (553)
Q Consensus 313 -g-~~rVfeIg~~FR~E~-~~-----t~rHl~EFt~lE~e~a~~~~~~~--~m~~~e~ll~~i 365 (553)
. -=|+|++++|||+|- +. +.--.-||+|.|.+. |.. -++ ..+..++|+...
T Consensus 286 ~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~-f~~-pe~~~s~~e~e~~~~~~ 346 (484)
T 3lss_A 286 LKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFV-VCS-PRQEESWRHLEDMITTS 346 (484)
T ss_dssp CSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEE-EEC-SSTTHHHHHHHHHHHHH
T ss_pred hhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEE-EeC-cchHHHHHHHHHHHHHH
Confidence 1 248999999999996 21 111245999999984 543 344 677777666543
|
| >1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00013 Score=79.28 Aligned_cols=116 Identities=20% Similarity=0.186 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCC------ccceeecCC-----CCceecccChh-----hHhh
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGG------SAVFRLDYK-----GQSACLAQSPQ-----LHKQ 307 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egg------a~~F~v~~~-----~~~~~L~~SPq-----l~lk 307 (553)
-.+++..|.+.+|+.|.. ||.||.||+|.... .+.| -..|.+..- +..++|+--.+ +|.+
T Consensus 70 g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~~ 148 (501)
T 1nj1_A 70 GFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFAL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHHHh
Confidence 356778899999999999 99999999997532 1111 234555432 46788885544 3444
Q ss_pred hcccC-C-CceeEEEeceecCCCCCCCC--CcCccc-ceeEEeccccCHHHHHHHHHHHHHH
Q 008808 308 MSICG-D-FGRVFETGPVFRAEDSYTHR--HLCEFT-GLDVEMEIKKHYSEVMDIVDRLFVT 364 (553)
Q Consensus 308 ~li~~-g-~~rVfeIg~~FR~E~~~t~r--Hl~EFt-~lE~e~a~~~~~~~~m~~~e~ll~~ 364 (553)
..... . --|+|+||+|||+|...+.= -.-||+ |+|.+..+. +.++....+++++..
T Consensus 149 ~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~-~~e~a~~e~~~~l~~ 209 (501)
T 1nj1_A 149 WVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHA-TASEAEEQVERAVEI 209 (501)
T ss_dssp HCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEES-SHHHHHHHHHHHHHH
T ss_pred hhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEEC-CHHHHHHHHHHHHHH
Confidence 33322 2 25999999999999751111 235999 999987666 467776666666543
|
| >2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00036 Score=75.82 Aligned_cols=117 Identities=17% Similarity=0.206 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHH-HhHhCCcEEEecceeeccC---CCCCc-----cceeec-----C--------------------
Q 008808 246 GIFRIQSQVGNIFRQ-FLLSENFVEIHTPKLIAGS---SEGGS-----AVFRLD-----Y-------------------- 291 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~-fl~~~gF~EV~TP~l~~~~---~egga-----~~F~v~-----~-------------------- 291 (553)
.-.+++..|.+++|+ ++...||.||.||+|.... .-|.. ..|.+. .
T Consensus 229 ~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~ 308 (522)
T 2cja_A 229 QSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTK 308 (522)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhcccccccc
Confidence 345678899999996 6889999999999997431 01111 234442 0
Q ss_pred ------CCCceecccChhh-----HhhhcccC-C-CceeEE-EeceecCCCC--CCCCCcCcccceeEEeccccCHHHHH
Q 008808 292 ------KGQSACLAQSPQL-----HKQMSICG-D-FGRVFE-TGPVFRAEDS--YTHRHLCEFTGLDVEMEIKKHYSEVM 355 (553)
Q Consensus 292 ------~~~~~~L~~SPql-----~lk~li~~-g-~~rVfe-Ig~~FR~E~~--~t~rHl~EFt~lE~e~a~~~~~~~~m 355 (553)
-+..+||+-..+. |....... . --|+|+ ||+|||+|.. +..--.-||+|.|++. |. +-++..
T Consensus 309 ~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~Epgs~~GL~R~REF~q~E~~~-F~-~pe~s~ 386 (522)
T 2cja_A 309 LIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVW-IG-TKEEVL 386 (522)
T ss_dssp HHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSSCCCTTSCSEEEEEEEEE-EE-EHHHHH
T ss_pred ccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCCCCCCCCCeEeEEEEEeeEEE-Ee-ChHHHH
Confidence 2467888854432 22222221 1 238999 9999999942 1123456999999996 66 567877
Q ss_pred HHHHHHHHH
Q 008808 356 DIVDRLFVT 364 (553)
Q Consensus 356 ~~~e~ll~~ 364 (553)
+..++++..
T Consensus 387 ee~ee~i~~ 395 (522)
T 2cja_A 387 KCAEELHDR 395 (522)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777733
|
| >3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00026 Score=76.31 Aligned_cols=117 Identities=19% Similarity=0.186 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCC-----ccceeecCCCCceecccChhh-----Hhhhccc--
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGG-----SAVFRLDYKGQSACLAQSPQL-----HKQMSIC-- 311 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egg-----a~~F~v~~~~~~~~L~~SPql-----~lk~li~-- 311 (553)
-.+++..|.+.+|+.|...||.||.||+|.... ..|+ ...|.++.-|..++||--.+. |.+.+-.
T Consensus 48 g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~d~~~~~l~LRP~~t~~i~~~~~~~~~s~r 127 (471)
T 3a32_A 48 GGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFDIEGHEFAVKPMNCPYHILLFLNEVAKHR 127 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEEEETTEEEEECSCSHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEEecCCcEEEEccccHHHHHHHHHhhhhhcc
Confidence 357888999999999999999999999997532 1122 235666555778889844432 3332211
Q ss_pred ---CCCceeEEEeceecCCCCC---CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHH
Q 008808 312 ---GDFGRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365 (553)
Q Consensus 312 ---~g~~rVfeIg~~FR~E~~~---t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i 365 (553)
.---|+|+||+|||+|... +---.-||+|+|.|.- . +..+..+.+.+++..+
T Consensus 128 ~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f-~-~~~~~~de~~e~i~~~ 185 (471)
T 3a32_A 128 SKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHII-V-PGGRVIDVVYDVFEEM 185 (471)
T ss_dssp GGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEE-E-EGGGHHHHHHHHHHHH
T ss_pred ccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEE-c-ChHHHHHHHHHHHHHH
Confidence 1235999999999999752 1113469999999964 3 2345555444555433
|
| >3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00028 Score=76.75 Aligned_cols=119 Identities=13% Similarity=0.147 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCC------ccceeecCC-----CCceecccChh-----hHh
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGG------SAVFRLDYK-----GQSACLAQSPQ-----LHK 306 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egg------a~~F~v~~~-----~~~~~L~~SPq-----l~l 306 (553)
.-++++..|.+.+|+.+.+.||.||.||+|.... -++| .+.|.+..- +.+++|+-..+ +|.
T Consensus 53 ~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~ 132 (518)
T 3ial_A 53 YGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFS 132 (518)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHHHH
Confidence 3457788999999999999999999999997533 1222 225555432 46789985554 344
Q ss_pred hhccc-CC-CceeEEEeceecCCCCC--CCCCcCcccceeEEeccccCHHHHHHHHHHHHHHH
Q 008808 307 QMSIC-GD-FGRVFETGPVFRAEDSY--THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365 (553)
Q Consensus 307 k~li~-~g-~~rVfeIg~~FR~E~~~--t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i 365 (553)
+.+.. .. --|+|++|+|||+|-.. .---.-||+|.|.+.... +.+++.+.++.|+...
T Consensus 133 ~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~-~~e~a~~e~~~~l~~~ 194 (518)
T 3ial_A 133 KWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHA-TAEDAVSQLSDYWKVI 194 (518)
T ss_dssp HHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEES-SHHHHHHHHHHHHHHH
T ss_pred hhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEEC-CHHHHHHHHHHHHHHH
Confidence 43332 12 24999999999999421 211346999999997534 5788877777776433
|
| >4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00039 Score=75.65 Aligned_cols=117 Identities=12% Similarity=0.049 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----CCCCcc-----ceeecCC-----CCceecccChh-----hHhh
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEGGSA-----VFRLDYK-----GQSACLAQSPQ-----LHKQ 307 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~egga~-----~F~v~~~-----~~~~~L~~SPq-----l~lk 307 (553)
-++++..|.+.+|+.+.+.||.||.||+|.... ..|... .|.+..- +.+++|+--.+ +|.+
T Consensus 60 G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~~ 139 (519)
T 4hvc_A 60 AYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAK 139 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHHHh
Confidence 457788999999999999999999999996432 122222 3434221 23578865433 3455
Q ss_pred hcccC-C-CceeEEEeceecCCCCCCC--CCcCcccceeEEeccccCHHHHHHHHHHHHHH
Q 008808 308 MSICG-D-FGRVFETGPVFRAEDSYTH--RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (553)
Q Consensus 308 ~li~~-g-~~rVfeIg~~FR~E~~~t~--rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~ 364 (553)
.+... + --|+|++|+|||+|-+.++ --.-||+|.|.+..|. +.++..+.++.++..
T Consensus 140 ~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~-~~e~a~~E~~~~l~~ 199 (519)
T 4hvc_A 140 WVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFA-TMEEAAEEVLQILDL 199 (519)
T ss_dssp HCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEES-SHHHHHHHHHHHHHH
T ss_pred hccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEec-CHHHHHHHHHHHHHH
Confidence 44321 2 3599999999999943221 1235999999998776 567777777766643
|
| >3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00026 Score=76.10 Aligned_cols=116 Identities=13% Similarity=0.137 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC---CCC-----ccceeecCCCCceecccChhhHhhhcccCC----
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG-----SAVFRLDYKGQSACLAQSPQLHKQMSICGD---- 313 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egg-----a~~F~v~~~~~~~~L~~SPql~lk~li~~g---- 313 (553)
.-.+++.++++++++.+.+.||.||.||.|..... .|. .+.|.+.--+.++||.-..|.-+-.++..-
T Consensus 183 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~~~~~~LipTaE~pl~~l~~~ei~~S 262 (485)
T 3qne_A 183 YGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDGEDEKYLIATSEQPISAYHAGEWFES 262 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEETTEEEEECSSTHHHHHHHTTTCEESS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCCCCeEEEeccccHHHHHHHhcccccc
Confidence 45688999999999999999999999999975321 111 235655322567888755554433332221
Q ss_pred -----CceeEEEeceecCCCCC------CCCCcCcccceeEEeccccCHHHHHHHHHHHHH
Q 008808 314 -----FGRVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 314 -----~~rVfeIg~~FR~E~~~------t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
-=|+|++++|||+|-.. +.--.-||+|.|.+. |.. -++..+..++|+.
T Consensus 263 ~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~-pe~s~~e~e~ml~ 321 (485)
T 3qne_A 263 PAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTE-PEKSWEEFDRMIG 321 (485)
T ss_dssp HHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EEC-GGGHHHHHHHHHH
T ss_pred chhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeC-HHHHHHHHHHHHH
Confidence 24799999999999631 112345999999985 553 4666666666654
|
| >4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00083 Score=71.91 Aligned_cols=98 Identities=15% Similarity=0.233 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCCc---cceee-cCCCCceeccc--ChhhHhhhcccC---CC
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGS---AVFRL-DYKGQSACLAQ--SPQLHKQMSICG---DF 314 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egga---~~F~v-~~~~~~~~L~~--SPql~lk~li~~---g~ 314 (553)
-.+++..|.+.+|+.|...||.||.||++.... ...|. ..|.+ +--|+.+.||- .+.+.- +++. .-
T Consensus 27 ~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D~~g~~l~LRPd~T~~~aR--~~~~~~~~p 104 (464)
T 4g84_A 27 QMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFAR--YLAMNKLTN 104 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCBBCCCSSCCEEECSCSHHHHHH--HHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeEEEECCCCCEEEeCCcCcHHHHH--HHHhcCCCC
Confidence 357788999999999999999999999995321 11121 24543 23467777773 122211 1110 13
Q ss_pred ceeEEEeceecCCCCC-CCCCcCcccceeEEec
Q 008808 315 GRVFETGPVFRAEDSY-THRHLCEFTGLDVEME 346 (553)
Q Consensus 315 ~rVfeIg~~FR~E~~~-t~rHl~EFt~lE~e~a 346 (553)
-|.|+||++||.|... ..-+.-||+|+++|.-
T Consensus 105 ~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~ 137 (464)
T 4g84_A 105 IKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIA 137 (464)
T ss_dssp EEEEEEEEEECCCC------CCSEEEEEEEEEE
T ss_pred ceeEEEecceeccCCccccCccceeeecceecc
Confidence 5899999999999642 2235579999999974
|
| >1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00047 Score=69.01 Aligned_cols=88 Identities=18% Similarity=0.193 Sum_probs=58.2
Q ss_pred HHHHH--HHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecc--cChhhHhhhccc-C-CCceeEEEeceecCCC
Q 008808 255 GNIFR--QFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLA--QSPQLHKQMSIC-G-DFGRVFETGPVFRAED 328 (553)
Q Consensus 255 ~~~iR--~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~--~SPql~lk~li~-~-g~~rVfeIg~~FR~E~ 328 (553)
.+.+| +.|...||.||.||++.....-.. +.| ++--|+.+.|| ..|.+....+-- . ..-|.|++|+|||.|.
T Consensus 7 e~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~-d~f-~d~~g~~l~LRpd~T~~~a~~~~~~~~~~p~R~~y~g~vfR~e~ 84 (275)
T 1usy_A 7 EKVFSFYSKATKKGFSPFFVPALEKAEEPAG-NFF-LDRKGNLFSIREDFTKTVLNHRKRYSPDSQIKVWYADFVYRYSG 84 (275)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEEECSSCCS-SCE-EETTSCEEEECCCHHHHHHHHHTTCTTCCCEEEECCEEEEEEET
T ss_pred HHHHHHHHHHHHCCCEEecCccccchhhhcc-ccc-CCCCCCEEEeCCcChHHHHHHHhhcCCCCceEEEEeceEEecCC
Confidence 34445 999999999999999965332111 234 34456777777 223333222211 1 3469999999999998
Q ss_pred CCCCCCcCcccceeEEeccc
Q 008808 329 SYTHRHLCEFTGLDVEMEIK 348 (553)
Q Consensus 329 ~~t~rHl~EFt~lE~e~a~~ 348 (553)
+.. -||||+++|.--.
T Consensus 85 ~~~----Ref~Q~g~ei~g~ 100 (275)
T 1usy_A 85 SDL----VAEYQLGLEKVPR 100 (275)
T ss_dssp TEE----EEEEEEEEEEESC
T ss_pred CCC----CeeeEeCEEEecC
Confidence 633 6999999997543
|
| >4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00087 Score=73.03 Aligned_cols=99 Identities=14% Similarity=0.202 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC---CCCCc---cceee-cCCCCceeccc--ChhhHhhhcccC---C
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGS---AVFRL-DYKGQSACLAQ--SPQLHKQMSICG---D 313 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~---~egga---~~F~v-~~~~~~~~L~~--SPql~lk~li~~---g 313 (553)
.-.+++..|.+.+|+.|...||.||.||++.... ...|. ..|.+ +--|+.+.||- .+.+. ++++. .
T Consensus 79 ~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D~~g~~l~LRPd~T~~~a--R~~~~~~~~ 156 (517)
T 4g85_A 79 RQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFA--RYLAMNKLT 156 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBCCTTSCCEEECSCSHHHHH--HHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEEEECCCCCEEEeCCcCcHHHH--HHHHhCCCC
Confidence 3457889999999999999999999999985321 11121 13443 23467777773 11111 11111 1
Q ss_pred CceeEEEeceecCCCCCC-CCCcCcccceeEEec
Q 008808 314 FGRVFETGPVFRAEDSYT-HRHLCEFTGLDVEME 346 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t-~rHl~EFt~lE~e~a 346 (553)
--|.|+||+|||.|.... .=+.-||+|+++|.-
T Consensus 157 p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~ 190 (517)
T 4g85_A 157 NIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIA 190 (517)
T ss_dssp CEEEEEEEEEECCCC-------CCEEEEEEEEEE
T ss_pred CceeEEEeceEeccCcccccCccceeeeeceecc
Confidence 348999999999996421 224579999999974
|
| >2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.007 Score=69.17 Aligned_cols=92 Identities=17% Similarity=0.066 Sum_probs=56.2
Q ss_pred HHHHHHHHHhHhCCcEEEecceeeccCCC----CCcc-ceee-cCCC-CceecccChhhHhhhcccC----C--CceeEE
Q 008808 253 QVGNIFRQFLLSENFVEIHTPKLIAGSSE----GGSA-VFRL-DYKG-QSACLAQSPQLHKQMSICG----D--FGRVFE 319 (553)
Q Consensus 253 ~i~~~iR~fl~~~gF~EV~TP~l~~~~~e----gga~-~F~v-~~~~-~~~~L~~SPql~lk~li~~----g--~~rVfe 319 (553)
++.+.+|+.|...||.|+.|..+++...- +... .+.+ |... ....||+|-=--+=..+.. + -=|+||
T Consensus 497 ~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~vrlFE 576 (795)
T 2rhq_B 497 HKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKDVRLYE 576 (795)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEECTTTTTTTCSSCCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEecCCccCHHHHHhhCCCCCceEEEcCCCchhhhhhhhccHHHHHHHHHHHhcCCCCCeEEEE
Confidence 45677899999999999999988754211 1122 2443 2222 2335765532222222221 1 249999
Q ss_pred EeceecCCCCCCCCCcCcccceeEEec
Q 008808 320 TGPVFRAEDSYTHRHLCEFTGLDVEME 346 (553)
Q Consensus 320 Ig~~FR~E~~~t~rHl~EFt~lE~e~a 346 (553)
||+|||.+.. +..| +||++|..-+.
T Consensus 577 iG~Vf~~d~~-~~~~-~e~~~la~l~~ 601 (795)
T 2rhq_B 577 IGRVFFGNGE-GELP-DEVEYLSGILT 601 (795)
T ss_dssp EEEEEECCCT-TSCC-EEEEEEEEEEE
T ss_pred EeeEEecCCc-ccCc-chhhEEEEEEE
Confidence 9999997542 2256 89999987544
|
| >1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0019 Score=70.15 Aligned_cols=32 Identities=3% Similarity=0.099 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhH--hCCcEEEecceeecc
Q 008808 247 IFRIQSQVGNIFRQFLL--SENFVEIHTPKLIAG 278 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~--~~gF~EV~TP~l~~~ 278 (553)
-.+++..|.+.+|+.+. ..||.||.||+|...
T Consensus 38 G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~ 71 (505)
T 1ati_A 38 GVELKNNLKQAWWRRNVYERDDMEGLDASVLTHR 71 (505)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEET
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCH
Confidence 35688899999999999 899999999999754
|
| >3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0029 Score=67.59 Aligned_cols=107 Identities=10% Similarity=0.026 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHhH-hCC-cEEEecceeeccCCCCCccceeecCCCCceeccc--ChhhHh---hhcccC--C-Ccee
Q 008808 248 FRIQSQVGNIFRQFLL-SEN-FVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQ--SPQLHK---QMSICG--D-FGRV 317 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~-~~g-F~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~--SPql~l---k~li~~--g-~~rV 317 (553)
..+|+.|.+..|+.+. .+| +.||.||+.....+-|+-+-|. +|||. +|-.+. ..+... . -=|+
T Consensus 104 ~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~~~~SGH~d~~~-------~~LRPeTaqg~~~nfk~~~~s~r~~LP~~i 176 (459)
T 3ikl_A 104 VELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGDSAFR-------GGLRENLLHGALEHYVNCLDLVNKRLPYGL 176 (459)
T ss_dssp HHHHHHHHHHHHHHHTTSSCSCEECCCCSBCCSCCCSSCSCCT-------TB-CSCSHHHHHHHTTTTTGGGTTBSSEEE
T ss_pred HHHHHHHHHHHHHHHhhccCceEeeccccccccccCcchhhhc-------ceECCCCChhHHHHHhhhhhhccccCCeEE
Confidence 4678999985555554 366 7789999865444555555554 77874 333222 111111 1 2379
Q ss_pred EEEeceecCCCC-CCCCC----cCcccceeEEeccccCHHHHHHHHHHHHH
Q 008808 318 FETGPVFRAEDS-YTHRH----LCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 318 feIg~~FR~E~~-~t~rH----l~EFt~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
.+||+|||||-. .+.+| .-||||.|++. |. +-++..+..+.++.
T Consensus 177 aqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~-F~-~Pe~~~e~~~~~~~ 225 (459)
T 3ikl_A 177 AQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVW-FT-PPRTSNQWLDFWLR 225 (459)
T ss_dssp EEEEEEECCC----------CCCCEEEEEEEEE-EE-CGGGHHHHHHHHHH
T ss_pred EEEeeeeecccccccCCCCcccccceeeeeEEE-Ee-ChhHHHHHHHHHHH
Confidence 999999999941 13333 36999999974 44 34555555444443
|
| >3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0017 Score=66.55 Aligned_cols=117 Identities=14% Similarity=0.057 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCC---CCC-----ccceeecCC-------------------------
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG-----SAVFRLDYK------------------------- 292 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---egg-----a~~F~v~~~------------------------- 292 (553)
..-+++..|.+++|+ ..+.||.||.||.|..... -|. -..|.+.-+
T Consensus 62 ~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l~ 140 (346)
T 3mf2_A 62 LYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLS 140 (346)
T ss_dssp HHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGEE
T ss_pred hHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhccccccccccC
Confidence 445778889999999 8899999999999974321 111 113444221
Q ss_pred CCceecccChh-----hHhhh-cccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHH
Q 008808 293 GQSACLAQSPQ-----LHKQM-SICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365 (553)
Q Consensus 293 ~~~~~L~~SPq-----l~lk~-li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i 365 (553)
+.++||.-.-+ +|... .+...--|+-++|+|||.|.+.+.-.+-+|||.|+-. |. .-+++.+..++|+..+
T Consensus 141 ~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~-tpEqs~~e~e~l~~~a 217 (346)
T 3mf2_A 141 PADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVC-IG-TPDDVSDFRERWMVRA 217 (346)
T ss_dssp EEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EE-SHHHHHHHHHHHHHHH
T ss_pred CCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEE-Ee-CHHHHHHHHHHHHHHH
Confidence 23577765543 34432 2333346777899999999976667778999999864 44 6788888888887643
|
| >2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0028 Score=71.37 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhH-hCCcEEEecceeec
Q 008808 248 FRIQSQVGNIFRQFLL-SENFVEIHTPKLIA 277 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~-~~gF~EV~TP~l~~ 277 (553)
.+++..|.+.+|+.|. ..||.||.||+|..
T Consensus 101 ~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~ 131 (693)
T 2zt5_A 101 CALKNNIIQTWRQHFIQEEQILEIDCTMLTP 131 (693)
T ss_dssp HHHHHHHHHHHHHHTHHHHTCEECCCCSEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCcEEEEeCCccc
Confidence 5788999999999998 56999999999974
|
| >1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.014 Score=50.40 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=68.2
Q ss_pred ceEEeccccCCCCCCEEEEEEEEeee---------ccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCc
Q 008808 91 EWTVVGALNGSLKDQEVLIRGRVHTT---------RPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNES 161 (553)
Q Consensus 91 ~~~~i~~l~~~~~g~~V~v~GrV~~~---------R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~es 161 (553)
.++.|++|++... .++|+|||.++ +..| ++.=++|.|..+.|+|++-.. ...+|...|..|+
T Consensus 3 ~~~~Is~L~p~~~--~w~I~~rV~~k~~~r~~~~~~~~g-~~~~~~L~De~G~I~at~~~~------~~~~f~~~l~eG~ 73 (114)
T 1ynx_A 3 PIFAIEQLSPYQN--VWTIKARVSYKGEIKTWHNQRGDG-KLFNVNFLDTSGEIRATAFND------FATKFNEILQEGK 73 (114)
T ss_dssp CBCCGGGCCTTTC--CCEEEEEEEEEEEEEEEECSSCEE-EEEEEEEEETTEEEEEEECHH------HHHHHHHHSCSSS
T ss_pred ceEEHHHCCCCCC--ceEEEEEEEEeccceEEecCCCCc-eEEEEEEECCCCeEEEEECHH------HHHHHHhhcccCc
Confidence 3566777765433 36788888743 2345 788899999999999999653 3345778899999
Q ss_pred eEEEEEE-EecCCCccCCCceeEEEEEeEEEEeecCC
Q 008808 162 IVDVIGV-VSVPDVEIKGATQQVEVQIKKLYCVSRAA 197 (553)
Q Consensus 162 iV~V~G~-v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~ 197 (553)
++.|.+. |....+.-+.....+||....-..+.+|.
T Consensus 74 vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~ 110 (114)
T 1ynx_A 74 VYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECF 110 (114)
T ss_dssp EEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEESC
T ss_pred EEEECCcEEEECCCCcccCCCCEEEEECCCCEEEECC
Confidence 9999984 44433333333346999997767777663
|
| >1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0077 Score=64.49 Aligned_cols=112 Identities=12% Similarity=0.067 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHh--HhCCcEEEecceeeccCC---C--CC---cccee---------------e--cCCCCceeccc
Q 008808 248 FRIQSQVGNIFRQFL--LSENFVEIHTPKLIAGSS---E--GG---SAVFR---------------L--DYKGQSACLAQ 300 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl--~~~gF~EV~TP~l~~~~~---e--gg---a~~F~---------------v--~~~~~~~~L~~ 300 (553)
.+++..|.+++|+.+ ...|+.||.||+|..... + |. ++-+. + .+++.++|||-
T Consensus 62 ~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~LRP 141 (454)
T 1g5h_A 62 VELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLRA 141 (454)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEECS
T ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceeecc
Confidence 578899999899774 589999999999975431 1 11 11111 0 12345678874
Q ss_pred --ChhhH---hhhcccC--CC-ceeEEEeceec---CCCCCCCCC----cCcccceeEEeccccCHHHHHHHHHHHHH
Q 008808 301 --SPQLH---KQMSICG--DF-GRVFETGPVFR---AEDSYTHRH----LCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 301 --SPql~---lk~li~~--g~-~rVfeIg~~FR---~E~~~t~rH----l~EFt~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
+|-.+ ++.+-.. .+ =+++|||+||| ||-+ + +| .-||||.|.+. |. +.++..+..+.++.
T Consensus 142 eta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s-~-~~Gl~R~REF~q~E~~~-F~-~pe~~~e~~~~~~~ 215 (454)
T 1g5h_A 142 TLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQ-T-PSSVTRVGEKTEASLVW-FT-PTRTSSQWLDFWLR 215 (454)
T ss_dssp CSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC-----------CEEEEEEEEEEEE-EE-CHHHHHHHHHHHHH
T ss_pred cccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCccccc-C-CCCccccCceehhheEE-Ee-CHhhHHHHHHHHHH
Confidence 33222 2222121 22 48999999999 6964 2 43 57999999984 55 56666555544443
|
| >2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.017 Score=49.70 Aligned_cols=89 Identities=16% Similarity=0.225 Sum_probs=62.9
Q ss_pred eEEeccccCCCCCCEEEEEEEEeee-------ccCC--CceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCce
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTT-------RPVG--NKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESI 162 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~-------R~~G--~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esi 162 (553)
+..|.+|. .|+.|.+.|+|.++ +..| +++.++.|.|+++.|.+.+-.... . ....+..|++
T Consensus 7 ~~~I~~L~---~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~I~~t~w~~~~---~----~~~~l~~G~v 76 (115)
T 2k50_A 7 MDTISKLE---EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENI---K----LLKKFREGDV 76 (115)
T ss_dssp CCCTTTCC---TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEETTGG---G----GGGTCCTTSE
T ss_pred eEEHHHCC---CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCeEEEEEeCchh---h----hhhcCCCCCE
Confidence 34566664 58899999999988 2345 589999999999999999876421 1 1256999999
Q ss_pred EEEEEEEecCCCccCCCceeEEEEEeEEEEeec
Q 008808 163 VDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSR 195 (553)
Q Consensus 163 V~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~ 195 (553)
|.|.|.+....- .+.++|.+.+...+.+
T Consensus 77 v~i~g~~v~~~f-----~g~~qL~~~~~~~i~~ 104 (115)
T 2k50_A 77 IRIKDVNIRGGF-----GGRKEAHLMPRSTVEV 104 (115)
T ss_dssp EEEEEEEECCCS-----SSSCEEEECTTCCEEE
T ss_pred EEEEeeEEcccc-----CCeEEEEECCCceEEE
Confidence 999998854311 1347777755444433
|
| >3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.061 Score=49.20 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=61.4
Q ss_pred CEEEEEEEEeeeccCCCceEEEEEEeCCe-EEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeE
Q 008808 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVS-TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQV 183 (553)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~-~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~ 183 (553)
+.|.|.|.|.+++... +-..+.|-|++| .|.|++-.+.. .........+..|++|.|.|.|..- .++.
T Consensus 48 ~~V~IvGiVv~~~~~~-~~~~ytIDD~TG~~I~cv~w~~~~---~~~~~~~~~l~~G~~VrV~G~v~~f-------r~~r 116 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIYE-GKHVLTVDDCSGMVLRVVFIIQDD---FSMSKRAISMSPGNVVCVFGKINSF-------RSEV 116 (159)
T ss_dssp CEEEEEEEEEEEEEET-TEEEEEEECSSSCEEEEEEEGGGC---HHHHHHHTTCCTTCEEEEEEEEECS-------SSSC
T ss_pred EEEEEEEEEEEEEEeC-CEEEEEEecCCCCeEEEEEEccCC---CCcccccccCCCCCEEEEEEEEEee-------CCEE
Confidence 5689999999999887 557799999988 69999987631 1111223468999999999999643 2357
Q ss_pred EEEEeEEEEeec
Q 008808 184 EVQIKKLYCVSR 195 (553)
Q Consensus 184 Ei~v~~i~~ls~ 195 (553)
+|.+.++.++..
T Consensus 117 qI~~~~i~~v~d 128 (159)
T 3kf6_A 117 ELIAQSFEELRD 128 (159)
T ss_dssp EEEEEEEEEECS
T ss_pred EEEEEEEEECCC
Confidence 999999988863
|
| >3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.14 Score=43.32 Aligned_cols=89 Identities=16% Similarity=0.199 Sum_probs=67.4
Q ss_pred ceEEeccccCCCCCCEEEEEEEEeee-------ccCCC--ceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCc
Q 008808 91 EWTVVGALNGSLKDQEVLIRGRVHTT-------RPVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNES 161 (553)
Q Consensus 91 ~~~~i~~l~~~~~g~~V~v~GrV~~~-------R~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~es 161 (553)
++.+|++|.+ +..|.|.|+|.++ |..|+ ++.=+.|.|+++.|.+++=.+.. . ..+..||
T Consensus 4 ~~~~I~dL~~---~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~a----~-----~~l~~Gd 71 (105)
T 3dm3_A 4 DTYNIGELSP---GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLT----D-----IDVGRGD 71 (105)
T ss_dssp CEECGGGCCS---SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGG----G-----SCCCTTC
T ss_pred cceEHHHCCC---CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECccc----c-----cccCCCC
Confidence 4677888866 3789999999876 22342 46668999999999998764421 0 1699999
Q ss_pred eEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCC
Q 008808 162 IVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAA 197 (553)
Q Consensus 162 iV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~ 197 (553)
+|.|.|.|.... .+.+||++.+...|.+|.
T Consensus 72 vv~i~g~vk~~~------~g~~eL~~g~~~~i~~~~ 101 (105)
T 3dm3_A 72 YVRVRGYIREGY------YGGLECTANYVEILKKGE 101 (105)
T ss_dssp EEEEEEEEEECT------TSSEEEEEEEEEEEECCC
T ss_pred EEEEEEEEEEcc------CCCEEEEeCCceEEEecc
Confidence 999999887643 246999999999998885
|
| >3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.17 Score=42.13 Aligned_cols=84 Identities=13% Similarity=0.184 Sum_probs=61.0
Q ss_pred EeccccCCCCCCEEEEEEEEeeec-------cCCC--ceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHh-cCCCCceE
Q 008808 94 VVGALNGSLKDQEVLIRGRVHTTR-------PVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR-SLSNESIV 163 (553)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R-------~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~-~l~~esiV 163 (553)
+|++|.+ |..|.|.|+|.++- ..|+ ++.=+.|.|+++.|.+.+-.+. +. .+..||+|
T Consensus 4 kI~dl~~---g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~I~~tlW~~~----------~~~~i~~Gdvv 70 (97)
T 3e0e_A 4 KISELMP---NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNEL----------ADFEVKKGDIA 70 (97)
T ss_dssp CGGGCCT---TEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGG----------GGCCCCTTCEE
T ss_pred EHHHCCC---CCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECCc----------cccccCCCCEE
Confidence 4666654 57899999998862 2342 5666889999999999876542 11 69999999
Q ss_pred EEEEEEecCCCccCCCceeEEEEEeEEEEeecCC
Q 008808 164 DVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAA 197 (553)
Q Consensus 164 ~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~ 197 (553)
.|.|.|..-. +.+||++.+...|.+|+
T Consensus 71 ~i~g~v~~~~-------~~~el~~g~~~~i~k~~ 97 (97)
T 3e0e_A 71 EVSGYVKQGY-------SGLEISVDNIGIIEKSL 97 (97)
T ss_dssp EEEEEEEEC---------CEEEEEEEEEEEECCC
T ss_pred EEEEEEEEcC-------CeEEEEECCCcEEEECC
Confidence 9999886432 36999999888887763
|
| >3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.049 Score=60.19 Aligned_cols=109 Identities=13% Similarity=0.120 Sum_probs=66.6
Q ss_pred HHHHHHHHHhHhCCcEEEecceeeccC--------CCCCccceee-cCCCC-ceecccChhhHhhhccc-----CCCcee
Q 008808 253 QVGNIFRQFLLSENFVEIHTPKLIAGS--------SEGGSAVFRL-DYKGQ-SACLAQSPQLHKQMSIC-----GDFGRV 317 (553)
Q Consensus 253 ~i~~~iR~fl~~~gF~EV~TP~l~~~~--------~egga~~F~v-~~~~~-~~~L~~SPql~lk~li~-----~g~~rV 317 (553)
++.+.+|+.|...||.||-|+.+++.. ..++...+.+ |-... .-.||+|-=--+=..+. +.-=|+
T Consensus 395 ~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~vrl 474 (589)
T 3l4g_B 395 KLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKL 474 (589)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTTSCSCEEE
T ss_pred HHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 446778999999999999999997531 1122334443 22222 24677763222111221 113489
Q ss_pred EEEeceecCCCCCCCCCcCcccceeEEeccc-cCHHHHHHHHHHHH
Q 008808 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLF 362 (553)
Q Consensus 318 feIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-~~~~~~m~~~e~ll 362 (553)
||||+|||.+.. +.+|.+|+.+|..-+... .++.++...++.++
T Consensus 475 FEiG~Vf~~d~~-~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll 519 (589)
T 3l4g_B 475 FEISDIVIKDSN-TDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIM 519 (589)
T ss_dssp EEEEEEEEECTT-STTSEEEEEEEEEEEESSSCCHHHHHHHHHHHH
T ss_pred EEeeeEEecCCc-cccCCccccEEEEEEECCCCCHHHHHHHHHHHH
Confidence 999999998764 457888999998754321 24666555555444
|
| >1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.09 Score=44.94 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=60.5
Q ss_pred EeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHH-hcCCCCceEEEEEEEecC
Q 008808 94 VVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~-~~l~~esiV~V~G~v~~~ 172 (553)
.+.+......+..|+|.|.|...-..- + |.+||+++.|+|-++.+. |. ..+.+++-|.|.|.|-+.
T Consensus 27 TV~~a~~~~Dd~~V~L~G~Iv~~~~~d-~---Y~F~D~TG~I~VeId~~~---------w~g~~v~p~~~Vri~GevDkd 93 (109)
T 1nnx_A 27 TVESAKSLRDDTWVTLRGNIVERISDD-L---YVFKDASGTINVDIDHKR---------WNGVTVTPKDTVEIQGEVDKD 93 (109)
T ss_dssp CHHHHTTSCSSEEEEEEEEEEEEEETT-E---EEEEETTEEEEEECCGGG---------STTCCCCTTSCEEEEEEEEEE
T ss_pred eHHHHhhCcCCCeEEEEEEEEEEeCCC-e---EEEECCCccEEEEEChhh---------cCCcccCCCCEEEEEEEECCC
Confidence 344444567899999999998765433 3 789999999999988652 33 358999999999999753
Q ss_pred CCccCCCceeEEEEEeEEEEee
Q 008808 173 DVEIKGATQQVEVQIKKLYCVS 194 (553)
Q Consensus 173 ~~~~~~~t~~~Ei~v~~i~~ls 194 (553)
- ...||.|..|++|.
T Consensus 94 ~-------~~~eIdV~~i~~~~ 108 (109)
T 1nnx_A 94 W-------NSVEIDVKQIRKVN 108 (109)
T ss_dssp T-------TEEEEEEEEEEEC-
T ss_pred C-------CceEEEEEEEEEcc
Confidence 2 13588888888764
|
| >3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B | Back alignment and structure |
|---|
Probab=94.85 E-value=0.18 Score=44.43 Aligned_cols=78 Identities=14% Similarity=0.138 Sum_probs=55.8
Q ss_pred CEEEEEEEEeeeccCCCceEEEEEEeCCe-EEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeE
Q 008808 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVS-TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQV 183 (553)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~-~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~ 183 (553)
..|++-|+|.++...... .-+.|.|++| .|.|..-.+....+ .-...+..|++|.|.|.+..-. ++.
T Consensus 32 ~~V~iVG~V~~~~~~~~~-~~~~ldD~TG~~I~~~~W~~~~~~~----~~~~~~~~g~yVrV~G~l~~f~-------g~~ 99 (132)
T 3kdf_D 32 SQVTIVGIIRHAEKAPTN-IVYKIDDMTAAPMDVRQWVDTDDTS----SENTVVPPETYVKVAGHLRSFQ-------NKK 99 (132)
T ss_dssp CEEEEEEEEEEEEECSSE-EEEEEECSSSSCEEEEEEC-------------CCCCTTCEEEEEEEEEEET-------TEE
T ss_pred EEEEEEEEEEEEEEcCCe-EEEEEECCCCCEEEEEEEccCCCcc----cccccccCCCEEEEEEEEEeEC-------CEE
Confidence 468999999999988744 4589999999 99999876532111 1135799999999999987532 256
Q ss_pred EEEEeEEEEee
Q 008808 184 EVQIKKLYCVS 194 (553)
Q Consensus 184 Ei~v~~i~~ls 194 (553)
.|.+..|..+.
T Consensus 100 qi~~~~ir~v~ 110 (132)
T 3kdf_D 100 SLVAFKIMPLE 110 (132)
T ss_dssp EEEEEEEEECS
T ss_pred EEEEEEEEEcC
Confidence 78888777664
|
| >3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.09 Score=50.23 Aligned_cols=111 Identities=18% Similarity=0.205 Sum_probs=62.6
Q ss_pred HHHHHHHHHhHhCCcEEEecceeeccCC-C-----CCccceee-cCCC-CceecccChhhHhhhcccC----CCc--eeE
Q 008808 253 QVGNIFRQFLLSENFVEIHTPKLIAGSS-E-----GGSAVFRL-DYKG-QSACLAQSPQLHKQMSICG----DFG--RVF 318 (553)
Q Consensus 253 ~i~~~iR~fl~~~gF~EV~TP~l~~~~~-e-----gga~~F~v-~~~~-~~~~L~~SPql~lk~li~~----g~~--rVf 318 (553)
++.+.+|+.|...||.||-|-.+++... + .......+ |-.. ..-.||+|-=--+=..+.- +.. |+|
T Consensus 8 ~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v~lF 87 (213)
T 3ig2_A 8 KLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKNADLKFF 87 (213)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCGGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC------CCEEE
T ss_pred HHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccCcCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCeeEE
Confidence 4667889999999999999999975321 0 11122333 2222 3346787743222222222 222 899
Q ss_pred EEeceecCCCCCC-----CCCcCcccceeEEeccc------------cCHHHHHHHHHHHHH
Q 008808 319 ETGPVFRAEDSYT-----HRHLCEFTGLDVEMEIK------------KHYSEVMDIVDRLFV 363 (553)
Q Consensus 319 eIg~~FR~E~~~t-----~rHl~EFt~lE~e~a~~------------~~~~~~m~~~e~ll~ 363 (553)
|||+||+.++... ..+..|..+|-.-++.. .|+.|+...+|.++.
T Consensus 88 EiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~ 149 (213)
T 3ig2_A 88 EFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFK 149 (213)
T ss_dssp EEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHH
T ss_pred EeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHH
Confidence 9999999765211 12335777776644321 246676666666654
|
| >4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.26 Score=43.52 Aligned_cols=79 Identities=10% Similarity=0.089 Sum_probs=56.0
Q ss_pred CEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEE
Q 008808 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVE 184 (553)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~E 184 (553)
..|++-|+|.+++..... .-+.|.|+++.|.|..=......+ ..-...+..|++|.|.|.+..-. ++..
T Consensus 37 ~~V~iVG~V~~~~~~~~~-~~~~ldD~TG~I~~~~W~~~~~~~---~~~~~~~~~g~yVrV~G~v~~f~-------g~~q 105 (136)
T 4gop_B 37 GQLTFVAVVRNISRNATN-VAYSVEDGTGQIEVRQWLDSSSDD---SSKASEIRNNVYVRVLGTLKSFQ-------NRRS 105 (136)
T ss_dssp CEEEEEEEEEEEEECSSE-EEEEEECSSCEEEEEEECC-----------CCSCCTTCEEEEEEEEEEET-------TEEE
T ss_pred EEEEEEEEEEEEEecCCe-EEEEEECCCCCEEEEEecccCCcc---cccccccCCCCEEEEEEEEEEeC-------CEEE
Confidence 468999999999887744 457999999999998765421110 01235799999999999986432 2567
Q ss_pred EEEeEEEEee
Q 008808 185 VQIKKLYCVS 194 (553)
Q Consensus 185 i~v~~i~~ls 194 (553)
|.+..|..+.
T Consensus 106 i~~~~ir~v~ 115 (136)
T 4gop_B 106 ISSGHMRPVI 115 (136)
T ss_dssp EEESEEEECS
T ss_pred EEEEEEEECC
Confidence 8888777654
|
| >3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.72 Score=48.14 Aligned_cols=79 Identities=23% Similarity=0.369 Sum_probs=64.0
Q ss_pred CCCCEEEEEEEEeee--ccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCC
Q 008808 102 LKDQEVLIRGRVHTT--RPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA 179 (553)
Q Consensus 102 ~~g~~V~v~GrV~~~--R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~ 179 (553)
.....++|+|.|.+. +..| .=+|+.|.|+++.|.|++-.. .+.+-+.+..|..||.|.|.|.|+. +
T Consensus 282 ~~~~~~~v~G~V~~~P~~~~G-GHV~f~l~d~~~~i~c~ayep----tk~fr~~vr~L~~GD~V~v~G~v~~------g- 349 (402)
T 3au7_A 282 ENYRSYRLRGRVTLEPYDIEG-GHVFFEIDTKFGSVKCAAFEP----TKQFRNVIRLLRKGDVVEVYGSMKK------D- 349 (402)
T ss_dssp CTTCEEEEEEEEEEEEEEETT-TEEEEEEEETTEEEEEEECGG----GTTHHHHHTTCCTTCEEEEEEEEET------T-
T ss_pred ccCceEEEEEEEecCcEeccC-ceEEEEEEcCCCEEEEEEEcc----chHHHHHHhcCCCCCEEEEEEeecC------C-
Confidence 456899999999987 4555 558999999999999999763 2356677788999999999999764 1
Q ss_pred ceeEEEEEeEEEEeecC
Q 008808 180 TQQVEVQIKKLYCVSRA 196 (553)
Q Consensus 180 t~~~Ei~v~~i~~ls~~ 196 (553)
.|.++++.++.-+
T Consensus 350 ----tLnvEk~~v~~l~ 362 (402)
T 3au7_A 350 ----TINLEKIQIVELA 362 (402)
T ss_dssp ----EEEEEEEEEEECC
T ss_pred ----EEEEEEEEEcccC
Confidence 7889999998764
|
| >3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.25 Score=47.12 Aligned_cols=111 Identities=18% Similarity=0.198 Sum_probs=66.6
Q ss_pred HHHHHHHHHhHhCCcEEEecceeeccCC-C-----CCccceee-cCCC-CceecccChhhHhhhcc----cCCCc--eeE
Q 008808 253 QVGNIFRQFLLSENFVEIHTPKLIAGSS-E-----GGSAVFRL-DYKG-QSACLAQSPQLHKQMSI----CGDFG--RVF 318 (553)
Q Consensus 253 ~i~~~iR~fl~~~gF~EV~TP~l~~~~~-e-----gga~~F~v-~~~~-~~~~L~~SPql~lk~li----~~g~~--rVf 318 (553)
++.+.+|+.|...||.||-|-.+++... + .......+ |-.. .--.||+|-=--+=..+ .-+.. |+|
T Consensus 8 ~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~~~lF 87 (213)
T 3ica_A 8 KWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLSLYLF 87 (213)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCGGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSEEEEE
T ss_pred HHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccCcCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCCeeEE
Confidence 5677899999999999999999975321 0 11122222 3333 33578877332221122 22333 899
Q ss_pred EEeceecCCCCC-----CCCCcCcccceeEEecc------------ccCHHHHHHHHHHHHH
Q 008808 319 ETGPVFRAEDSY-----THRHLCEFTGLDVEMEI------------KKHYSEVMDIVDRLFV 363 (553)
Q Consensus 319 eIg~~FR~E~~~-----t~rHl~EFt~lE~e~a~------------~~~~~~~m~~~e~ll~ 363 (553)
|||+||+.++.. ...+..|..+|-.-+.. ..|+.++...+|.++.
T Consensus 88 EiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~ 149 (213)
T 3ica_A 88 EWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLC 149 (213)
T ss_dssp EEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHH
T ss_pred EeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHH
Confidence 999999975421 01234577777665432 1368888877777765
|
| >1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A | Back alignment and structure |
|---|
Probab=92.98 E-value=0.23 Score=48.22 Aligned_cols=98 Identities=12% Similarity=0.101 Sum_probs=66.6
Q ss_pred cceEEeccccCCCCCCEEEEEEEEeee---c------cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCC
Q 008808 90 REWTVVGALNGSLKDQEVLIRGRVHTT---R------PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNE 160 (553)
Q Consensus 90 ~~~~~i~~l~~~~~g~~V~v~GrV~~~---R------~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~e 160 (553)
..++.|.+|++.. ..++|+|||.++ | ..| ++.-++|.|..+.|++++-.. ...+|...|..|
T Consensus 6 ~~~~~I~~L~p~~--~~w~I~~rV~~k~~~r~~~~~~~~g-~~~~~~L~De~G~I~at~~~~------~~~~~~~~l~~G 76 (246)
T 1jmc_A 6 SKVVPIASLTPYQ--SKWTICARVTNKSQIRTWSNSRGEG-KLFSLELVDESGEIRATAFNE------QVDKFFPLIEVN 76 (246)
T ss_dssp -CBCCGGGCCTTC--CCCEEEEEEEEECCCEEEECSSCEE-EEEEEEEECSSCEEEEEEEHH------HHHHHGGGCCTT
T ss_pred cceEEHHHCCCCC--CceEEEEEEEEecccceeeCCCCCc-eEEEEEEECCCCeEEEEEChH------HHHHhhhhcccC
Confidence 4567788887543 246899999865 2 234 677788999999999998753 234567789999
Q ss_pred ceEEEEEEEecC-CCccCCCceeEEEEEeEEEEeecC
Q 008808 161 SIVDVIGVVSVP-DVEIKGATQQVEVQIKKLYCVSRA 196 (553)
Q Consensus 161 siV~V~G~v~~~-~~~~~~~t~~~Ei~v~~i~~ls~~ 196 (553)
+++.|.+.-+++ .+..+.....+||....-..+.+|
T Consensus 77 ~vy~i~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~ 113 (246)
T 1jmc_A 77 KVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC 113 (246)
T ss_dssp CEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEEC
T ss_pred CEEEECCCEEEEcccCcccCCCCEEEEEcCCcEEEEc
Confidence 999999844433 222233334599988655555555
|
| >1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3 | Back alignment and structure |
|---|
Probab=92.32 E-value=0.78 Score=39.44 Aligned_cols=84 Identities=19% Similarity=0.196 Sum_probs=59.0
Q ss_pred EEeccccCCCCC-CEEEEEEEEeee---c----cCCC-ceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceE
Q 008808 93 TVVGALNGSLKD-QEVLIRGRVHTT---R----PVGN-KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIV 163 (553)
Q Consensus 93 ~~i~~l~~~~~g-~~V~v~GrV~~~---R----~~G~-kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV 163 (553)
.+|++|.+ | ..|.+.|+|.++ | ..|+ +..=+.|.|.++.|.+.+=... +..+..|++|
T Consensus 3 ~~I~dL~~---~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~I~~tlW~~~----------~~~~~~G~vv 69 (119)
T 1o7i_A 3 EKVGNLKP---NMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKH----------AGSIKEGQVV 69 (119)
T ss_dssp CCGGGCCT---TCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGG----------TTCCCTTCEE
T ss_pred EEHHHCcC---CCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCEEEEEEECCh----------hhcCCCCCEE
Confidence 45666654 4 358888988776 3 3453 6777889999999999887542 1348999999
Q ss_pred EEE-EEEecCCCccCCCceeEEEEEeEEEEeecC
Q 008808 164 DVI-GVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (553)
Q Consensus 164 ~V~-G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~ 196 (553)
.|. |.+..- .+.++|.+.+...|.++
T Consensus 70 ~i~~g~v~~~-------~g~~qL~i~~~~~i~~~ 96 (119)
T 1o7i_A 70 KIENAWTTAF-------KGQVQLNAGSKTKIAEA 96 (119)
T ss_dssp EEEEEEEEEE-------TTEEEEEECTTCEEEEC
T ss_pred EEEeEEEEEe-------CCEEEEEECCCEEEEEc
Confidence 999 777542 23689998775555444
|
| >2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A | Back alignment and structure |
|---|
Probab=91.91 E-value=0.95 Score=38.37 Aligned_cols=87 Identities=10% Similarity=0.054 Sum_probs=62.0
Q ss_pred eEEeccccCCCCCCEEEEEEEEeee--ccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEE-EE
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTT--RPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVI-GV 168 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~--R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~-G~ 168 (553)
+.+|.+|.+ .+..|.+.|+|.++ +..|+....+.|.|.+++|-+++=.... +..+..|++|.|. |.
T Consensus 5 ~~kI~dl~~--~~~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~I~~t~W~~~~---------~~~~~~G~~V~i~n~~ 73 (109)
T 2kbn_A 5 LTKIVDIVE--NGQWANLKAKVIQLWENTHESISQVGLLGDETGIIKFTIWKNAE---------LPLLEQGESYLLRSVV 73 (109)
T ss_dssp BCCTTTCCS--TTCEEEEEEEEEEEEECCCSSEEEEEEEECTTCCEEEEEEGGGC---------CCCCCTTCEEEEEEEE
T ss_pred ceEHHHCCC--CCCcEEEEEEEEEeEcCCCCeEEEEEEEECCCCeEEEEEECccc---------ccccCCCCEEEEEEEE
Confidence 456777754 37889999999987 3344456668999999999998875311 2468999999999 56
Q ss_pred EecCCCccCCCceeEEEEEeEEEEeecC
Q 008808 169 VSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (553)
Q Consensus 169 v~~~~~~~~~~t~~~Ei~v~~i~~ls~~ 196 (553)
+..- .+.++|.+.+...+.+.
T Consensus 74 v~~~-------~G~~~L~v~~~~~I~~~ 94 (109)
T 2kbn_A 74 VGEY-------NDRFQVQVNKNSSIEKL 94 (109)
T ss_dssp EEEE-------TTEEEEEECSSSEEEEC
T ss_pred EEEE-------CCEEEEEECCceEEEEC
Confidence 6432 23689998776655543
|
| >1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* | Back alignment and structure |
|---|
Probab=90.69 E-value=0.97 Score=51.46 Aligned_cols=106 Identities=20% Similarity=0.150 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhHhCCcEEEecceeeccC----CCCCccceee-cCCC-CceecccChhhHhhhccc-----C--CCcee
Q 008808 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEGGSAVFRL-DYKG-QSACLAQSPQLHKQMSIC-----G--DFGRV 317 (553)
Q Consensus 251 Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~egga~~F~v-~~~~-~~~~L~~SPql~lk~li~-----~--g~~rV 317 (553)
..++.+.+|+.|...||.|+-|-.+++.. ...+...+.+ |-.. ..-.||+|-=--+=..+. + .--|+
T Consensus 491 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~~vrl 570 (785)
T 1b7y_B 491 PYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALL 570 (785)
T ss_dssp HHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEESSCSSTTSSEECSCSHHHHHHHHHHHHHHSCCSCEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCHHHHHhcCCCCCeEEEcCCCchhhhhhhhhhHHHHHHHHHHHhhcCCCCCeEE
Confidence 34557778999999999999988887532 1111233443 2222 223577653222222222 1 23499
Q ss_pred EEEeceecCCCCCCCCCcCcccceeEEeccc-----------cCHHHHHHHHHHHHHHH
Q 008808 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-----------KHYSEVMDIVDRLFVTI 365 (553)
Q Consensus 318 feIg~~FR~E~~~t~rHl~EFt~lE~e~a~~-----------~~~~~~m~~~e~ll~~i 365 (553)
||||+||| + .||++|..-+... .++.++...++.++..+
T Consensus 571 FEiG~Vf~-~--------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~l 620 (785)
T 1b7y_B 571 FEVGRVFR-E--------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARL 620 (785)
T ss_dssp EEEEEEES-S--------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHH
T ss_pred EEEeeeec-c--------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHc
Confidence 99999999 2 6888888755442 26889888888887654
|
| >3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A | Back alignment and structure |
|---|
Probab=90.34 E-value=1.5 Score=37.95 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=52.5
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEe-CCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEe
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRE-RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVS 170 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd-~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~ 170 (553)
+..-+-|. ...|+.|++-|||.+++..| + . +.|.. +++.|+|.++...+ ..+ +.+|.|.|+|.
T Consensus 11 RVn~s~L~-~fvgk~VrivGkV~~~~~~g-~-~-~~l~s~Dg~~Vtv~l~~p~~----------~~l--~~~vEViG~V~ 74 (121)
T 3kdf_A 11 RINAGMLA-QFIDKPVCFVGRLEKIHPTG-K-M-FILSDGEGKNGTIELMEPLD----------EEI--SGIVEVVGRVT 74 (121)
T ss_dssp EECGGGGG-GGTTCEEEEEEEEEEECTTS-S-E-EEEECTTSCEEEEECSSCCS----------SCC--CSEEEEEEEEC
T ss_pred eECHHHHH-hhCCCeEEEEEEEEEEcCCC-C-E-EEEEeCCCCEEEEEeCCCCC----------ccc--CcEEEEEEEEC
Confidence 33344443 68899999999999999888 4 3 34554 56789998876311 123 45999999997
Q ss_pred cCCCccCCCceeEEEEEeEEEEeec
Q 008808 171 VPDVEIKGATQQVEVQIKKLYCVSR 195 (553)
Q Consensus 171 ~~~~~~~~~t~~~Ei~v~~i~~ls~ 195 (553)
.. ..|.+..+..++.
T Consensus 75 ~~----------~tI~~~~~~~fg~ 89 (121)
T 3kdf_A 75 AK----------ATILCTSYVQFKE 89 (121)
T ss_dssp TT----------SCEEEEEEEECCC
T ss_pred CC----------CeEEEEEEEecCC
Confidence 32 2566666555543
|
| >3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404} | Back alignment and structure |
|---|
Probab=90.21 E-value=1.4 Score=42.01 Aligned_cols=86 Identities=12% Similarity=0.178 Sum_probs=56.6
Q ss_pred CEEEEEEEEeeeccCCC-------ceEEEEEEeCCe---EEEEEeecCCCCcchHHHHH---HhcCCCCceEEEEEEEec
Q 008808 105 QEVLIRGRVHTTRPVGN-------KLAFVVVRERVS---TVQCLATVKPDSVSKEMVRF---VRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 105 ~~V~v~GrV~~~R~~G~-------kl~Fl~Lrd~~~---~iQvv~~~~~~~~~~~~~~~---~~~l~~esiV~V~G~v~~ 171 (553)
+.|.|.|+|...+-+-. ...|+.|-|.++ +|.|.++... .... ......|.+|.|+|++..
T Consensus 86 ~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~------~~~~gl~l~~~~~G~iV~VkG~i~~ 159 (220)
T 3kf8_A 86 NQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQ------FKEVGLTLDKKNYGKIVELEGEIYN 159 (220)
T ss_dssp CEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHH------HHTTTCCTTSCCTTCEEEEEEEEEE
T ss_pred EEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHH------hhccCccccccCCCeEEEEEEEEEe
Confidence 67999999999864431 358889999886 5888776431 1010 012457999999999975
Q ss_pred CCCccCCCce-eEEEEEeEEEEeecC
Q 008808 172 PDVEIKGATQ-QVEVQIKKLYCVSRA 196 (553)
Q Consensus 172 ~~~~~~~~t~-~~Ei~v~~i~~ls~~ 196 (553)
-........+ .-||.++++.+++..
T Consensus 160 ~r~~~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 160 WYDSINVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp CCCSTTTTSCCCEEEEEEEEEEEESS
T ss_pred eccccccccccceEEEEEEEEEeccC
Confidence 4211111111 359999999999853
|
| >2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A | Back alignment and structure |
|---|
Probab=89.90 E-value=1.4 Score=43.49 Aligned_cols=79 Identities=14% Similarity=0.118 Sum_probs=55.6
Q ss_pred CEEEEEEEEeeeccCCCceEEEEEEeCCe-EEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeE
Q 008808 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVS-TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQV 183 (553)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~-~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~ 183 (553)
..|++.|+|.++...+ .-.-+.|.|+++ .|.|.+-....... .-...+..|++|.|.|.|..-. +..
T Consensus 72 ~~V~ivG~V~~i~~~~-~~~~~~L~D~TG~~I~~k~W~~~~~~~----~~~~~~~~G~yVrV~G~v~~f~-------g~~ 139 (270)
T 2pi2_A 72 SQVTIVGIIRHAEKAP-TNIVYKIDDMTAAPMDVRQWVDTDDTS----SENTVVPPETYVKVAGHLRSFQ-------NKK 139 (270)
T ss_dssp SEEEEEEEEEEEEECS-SEEEEEEECSSSSCEEEEEECC-----------CCCCCTTCEEEEEEEEEEET-------TEE
T ss_pred EEEEEEEEEEEEEecc-ceEEEEEECCCCCEEEEEEEcCcCccc----chhhcCCCCCEEEEEEEEEecC-------Cee
Confidence 3589999999997776 445578999999 89999875421110 0134699999999999987432 246
Q ss_pred EEEEeEEEEeec
Q 008808 184 EVQIKKLYCVSR 195 (553)
Q Consensus 184 Ei~v~~i~~ls~ 195 (553)
.|.+..|..+..
T Consensus 140 qi~i~~ir~v~d 151 (270)
T 2pi2_A 140 SLVAFKIMPLED 151 (270)
T ss_dssp EEEEEEEEECSC
T ss_pred EEEEEEEEecCC
Confidence 777877776543
|
| >4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=89.43 E-value=0.52 Score=49.95 Aligned_cols=96 Identities=15% Similarity=0.178 Sum_probs=64.8
Q ss_pred eEEeccccCCCCCCEEEEEEEEeee---c------cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCce
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTT---R------PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESI 162 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~---R------~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esi 162 (553)
++.|.+|++.. ..++|+|||.++ | ..| ++.-++|.|+.+.|++++-.. ...+|...|..|++
T Consensus 3 ~~~I~~L~p~~--~~w~I~~rV~~k~~ir~~~~~~~~g-~~~~~~L~De~G~I~at~~~~------~~~~f~~~l~eG~v 73 (444)
T 4gop_C 3 IYPIEGLSPYQ--NRWTIKARVTSKSDIRHWSNQRGEG-KLFSVNLLDDSGEIKATGFND------AVDRFYPLLQENHV 73 (444)
T ss_dssp CCCSTTCCTTC--CSCEEEEECCEECCCEEEECSSCEE-EEEEEEEECSSCEEEEEEETH------HHHHHTTTCCTTCE
T ss_pred ceeHHHCCCCC--cceEEEEEEEEccCcceecCCCCCc-eEEEEEEEcCCCEEEEEEeHH------HHHHHHHheecCCE
Confidence 45667776543 346889999853 3 235 788899999999999998753 33456778999999
Q ss_pred EEEEEE-EecCCCccCCCceeEEEEEeEEEEeecC
Q 008808 163 VDVIGV-VSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (553)
Q Consensus 163 V~V~G~-v~~~~~~~~~~t~~~Ei~v~~i~~ls~~ 196 (553)
+.|.+. |......-+.....+||....-..+.+|
T Consensus 74 y~Is~~~V~~~~~~y~~~~~~~ei~~~~~T~V~~~ 108 (444)
T 4gop_C 74 YLISKARVNIAKKQFSNLQNEYEITFENSTEIEEC 108 (444)
T ss_dssp EEEESCEEEECCGGGCSCCCSEEEEECTTCEEEEC
T ss_pred EEEcCCEEEecCCccccCCCCEEEEEcCCcEEEEc
Confidence 999985 4333322223334599998654445544
|
| >2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* | Back alignment and structure |
|---|
Probab=88.83 E-value=0.59 Score=55.42 Aligned_cols=80 Identities=13% Similarity=0.198 Sum_probs=47.4
Q ss_pred CCCCEEEEEEEEeeec----cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccC
Q 008808 102 LKDQEVLIRGRVHTTR----PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK 177 (553)
Q Consensus 102 ~~g~~V~v~GrV~~~R----~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~ 177 (553)
..|+.|+|+|-|.++| .+|++++|++|.|.++.+.+++..+. ..++...|..+.+|.|+|.|....
T Consensus 1040 ~~g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~~evvvf~~~------~~~~~~~l~~~~~~~v~G~v~~~~---- 1109 (1220)
T 2hpi_A 1040 PGKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGRA------YEGVSPKLKEDIPLLVLAEVEKGE---- 1109 (1220)
T ss_dssp SSSCEEEEEEEECCC------------CEEEEETTEEEEEC-------------------CTTCEEEEEEEEC-------
T ss_pred cCCCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCCEEEEEcHHH------HHHHHHHhccCCEEEEEEEEEECC----
Confidence 4689999999999886 34556999999999999999998763 234456689999999999997432
Q ss_pred CCceeEEEEEeEEEEeec
Q 008808 178 GATQQVEVQIKKLYCVSR 195 (553)
Q Consensus 178 ~~t~~~Ei~v~~i~~ls~ 195 (553)
.+.|.+.++.-++.
T Consensus 1110 ----~~~l~~~~i~~l~~ 1123 (1220)
T 2hpi_A 1110 ----ELRVLAQAVWTLEE 1123 (1220)
T ss_dssp ------CEEEEEEEEHHH
T ss_pred ----CcEEEEeeeecHHH
Confidence 25677777765543
|
| >2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=88.67 E-value=3.2 Score=34.86 Aligned_cols=88 Identities=10% Similarity=0.134 Sum_probs=60.5
Q ss_pred eEEeccccCCCCCCEEEEEEEEeee-----ccCCC--ceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEE
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTT-----RPVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 164 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~-----R~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~ 164 (553)
+.+|++|.+. ...|.+.|+|.++ +..|+ +++=+.|.|.++.|.+.+=.. .+..|++|.
T Consensus 3 ~~kI~dl~pg--~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~I~~tlW~~-------------~l~~Gdvv~ 67 (106)
T 2k75_A 3 LVKIRDVSLS--TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGK-------------QLQDSDVVR 67 (106)
T ss_dssp BCCSTTCCTT--CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCEEEEEEESS-------------CCCTTEEEE
T ss_pred cEEHHHcCCC--CceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCeEEEEEEcC-------------ccCCCCEEE
Confidence 4566777542 2457778877664 23563 266788889999998887654 189999999
Q ss_pred EE-EEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CC
Q 008808 165 VI-GVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PI 201 (553)
Q Consensus 165 V~-G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~ 201 (553)
|. |.+..- .+.++|.+.+...|.+.... |+
T Consensus 68 i~ng~v~~~-------~g~~~L~v~~~~~I~~~~~~~~~ 99 (106)
T 2k75_A 68 IDNARVAQF-------NGYLSLSVGDSSRIESVNVNIPL 99 (106)
T ss_dssp EEEEEEEEE-------TTEEEEEECTTSEEEECCSCCCC
T ss_pred EEeeEEeEE-------CCEEEEEECCcEEEEECCCCCcc
Confidence 99 766432 24689999777666666544 54
|
| >1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A | Back alignment and structure |
|---|
Probab=88.02 E-value=5.6 Score=33.16 Aligned_cols=53 Identities=11% Similarity=0.241 Sum_probs=33.8
Q ss_pred EEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeec
Q 008808 135 VQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSR 195 (553)
Q Consensus 135 iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~ 195 (553)
++|++-.+.. + ...+.|+.||-|.|+|.+... ....|.+. .||++.+|..|+.
T Consensus 50 ~~vv~~g~~A---e---~~~~~l~KG~~V~V~G~L~~~-~~~~G~~r-~~v~~~~i~~l~~ 102 (104)
T 1txy_A 50 MPVIVSGHEN---Q---AITHSITVGSRITVQGFISCH-KAKNGLSK-MVLHAEQIELIDS 102 (104)
T ss_dssp EEEEEESSTT---H---HHHTTCCTTCEEEEEEEEEC---------C-CEEEEEEEEEC--
T ss_pred EEEEEEhHHH---H---HHHhhCCCCCEEEEEEEEEec-cCCCCCEE-EEEEEEEEEECcC
Confidence 8888876521 1 234669999999999999865 22223222 8999999998864
|
| >3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A | Back alignment and structure |
|---|
Probab=86.26 E-value=2.2 Score=36.60 Aligned_cols=57 Identities=11% Similarity=0.217 Sum_probs=41.0
Q ss_pred EEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC-CC
Q 008808 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PI 201 (553)
Q Consensus 134 ~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P~ 201 (553)
.|+|++-.+ ..+.++.++.||-|.|+|.+....+ .+ .+++|+++.|+.|+...-. |+
T Consensus 48 ~i~vv~~Gk-------~AE~~~~l~kGs~V~VeGrL~trs~--~G--~kl~l~a~~Ie~l~~~~~~~~~ 105 (115)
T 3fhw_A 48 TISAVALGD-------LALLLADTPLGTEMQVQGFLAPARK--DS--VKVKLHLQQARRIAGSMGRDPL 105 (115)
T ss_dssp EEEEEEETH-------HHHHHTTCCTTCEEEEEEEEEESST--TC--SSEEEEEEEEEECCCSCCC---
T ss_pred EEEEEEEhH-------HHHhhhccCCCCEEEEEEEEEECCC--CC--CEEEEEEEEEEEcCCCCCCCCc
Confidence 488888754 2333477999999999999986532 23 3599999999999876444 54
|
| >2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=85.79 E-value=5.9 Score=34.69 Aligned_cols=57 Identities=12% Similarity=0.072 Sum_probs=38.0
Q ss_pred eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC-ccCCCcee-EEEEEeEEEEeec
Q 008808 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGATQQ-VEVQIKKLYCVSR 195 (553)
Q Consensus 133 ~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~-~~~~~t~~-~Ei~v~~i~~ls~ 195 (553)
..+.|++-.+ ......+.|+.||.|.|+|.+....- ...|.+.. +||.+.+|..|..
T Consensus 49 ~~~~v~~wg~------~Ae~~~~~l~KG~~V~V~G~L~~~~~~dkdG~~r~~~ev~a~~i~~l~~ 107 (134)
T 2vw9_A 49 CFIDARLFGR------TAEIANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDK 107 (134)
T ss_dssp EEEEEEEEHH------HHHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCC
T ss_pred EEEEEEEEcH------HHHHHHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEEEccC
Confidence 3577777643 11123356999999999999875421 12243333 8999999999865
|
| >3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=85.51 E-value=8 Score=32.74 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=36.9
Q ss_pred eEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCC-ccCCCce-eEEEEEeEEEEeecC
Q 008808 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGATQ-QVEVQIKKLYCVSRA 196 (553)
Q Consensus 133 ~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~-~~~~~t~-~~Ei~v~~i~~ls~~ 196 (553)
..++|++-.+ ......+.|..||.|.|+|.+....- ...|.+. .+||.+.+|.+|.+.
T Consensus 50 ~~~~v~~wg~------~Ae~~~~~l~KG~~V~V~G~l~~~~~~d~dG~~~~~~ev~a~~i~~l~~~ 109 (116)
T 3vdy_A 50 DYVNCTLWRK------TAENTALYCQKGSLVGVSGRIQTRSYENEEGVNVYVTEVLADTVRFMDPK 109 (116)
T ss_dssp EEEEEEEEHH------HHHHHHHHCCTTCEEEEEEEEEEEEEC----CCEEEEEEEEEEEEECC--
T ss_pred EEEEEEEECH------HHHHHHHhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 4578887653 11123456999999999999875421 1234333 399999999998753
|
| >3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=85.32 E-value=7.4 Score=35.12 Aligned_cols=57 Identities=9% Similarity=0.088 Sum_probs=37.8
Q ss_pred eEEEEEeecCCCCcchHHHH-HHhcCCCCceEEEEEEEecCCC-ccCCCce-eEEEEEeEEEEeecC
Q 008808 133 STVQCLATVKPDSVSKEMVR-FVRSLSNESIVDVIGVVSVPDV-EIKGATQ-QVEVQIKKLYCVSRA 196 (553)
Q Consensus 133 ~~iQvv~~~~~~~~~~~~~~-~~~~l~~esiV~V~G~v~~~~~-~~~~~t~-~~Ei~v~~i~~ls~~ 196 (553)
..+.|++-.+ ..+ ....|+.|+.|.|+|.+....- ...|.+. .+||.+.+|.+|...
T Consensus 56 ~~i~vv~wg~-------~Ae~~~~~l~KG~~V~VeG~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k 115 (158)
T 3tqy_A 56 EWHRIAFFNR-------LAEIVGEYLRKGSKIYIEGSLRTRKWQDKNGVDRYTTEIIANEMHMLDNR 115 (158)
T ss_dssp EEEEEEEETH-------HHHHHHHHCCTTCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEECC--
T ss_pred EEEEEEEEhH-------HHHHHHhhcCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEccCC
Confidence 4577777643 223 3356999999999999875421 1234443 399999999999753
|
| >4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=83.17 E-value=2.4 Score=36.29 Aligned_cols=60 Identities=27% Similarity=0.386 Sum_probs=42.6
Q ss_pred eccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEe-CCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 95 VGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRE-RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 95 i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd-~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
-+.| ....|+.|+|-|||.+.+. + . +.|.. +++.|+|.++... .+..+.+|.|.|+|...
T Consensus 10 ~~~L-~~~~g~~VrivGkV~~~~g-~---~-~~l~s~d~~~Vtv~l~~~~------------~~~~~~~vEViG~V~~~ 70 (114)
T 4gop_A 10 SSML-GQYVGQTVRIVGKVHKVTG-N---T-LLMQTSDLGNVEIAMTPDS------------DVSSSTFVEVTGKVSDA 70 (114)
T ss_dssp TTTG-GGGTTSEEEEEEEEEEEET-T---E-EEEECTTSCEEEEECCSSC------------CGGGCSEEEEEEEECTT
T ss_pred HHHH-HhhCCCeEEEEEEEeeeCC-C---E-EEEEeCCCCEEEEEeCCCC------------CcccCcEEEEEEEEcCC
Confidence 3334 3588999999999999996 3 2 45664 4567887776542 23357899999999743
|
| >2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C | Back alignment and structure |
|---|
Probab=82.08 E-value=8.6 Score=34.16 Aligned_cols=57 Identities=23% Similarity=0.323 Sum_probs=40.5
Q ss_pred CCCCCCEEEEEEEEeeeccCCCceEEEEEEe-CCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEec
Q 008808 100 GSLKDQEVLIRGRVHTTRPVGNKLAFVVVRE-RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (553)
Q Consensus 100 ~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd-~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (553)
....|+.|+|-|||.++-..| + . +.|.. ++..|+|.++.... -..+-+|.|.|+|..
T Consensus 39 ~~fvGk~VriVGkV~~~~~~G-~-~-~~l~s~Dg~~VtV~l~~pL~------------~~~~~~VEViG~V~~ 96 (142)
T 2pi2_E 39 AQFIDKPVCFVGRLEKIHPTG-K-M-FILSDGEGKNGTIELMEPLD------------EEISGIVEVVGRVTA 96 (142)
T ss_dssp GGSTTCEEEEEEEEEEECTTS-S-E-EEEECTTSCEEEEECSSCCS------------SCCCSEEEEEEEECT
T ss_pred HhhCCCEEEEEEEEeEEcCCC-C-E-EEEEeCCCcEEEEEeCCCCC------------ccCCCEEEEEEEECC
Confidence 468899999999999995555 3 2 35554 45788888864211 123679999999954
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 553 | ||||
| d1eova2 | 353 | d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (As | 7e-93 | |
| d1n9wa2 | 304 | d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (As | 2e-76 | |
| d1b8aa2 | 335 | d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (As | 6e-71 | |
| d1l0wa3 | 356 | d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synt | 2e-65 | |
| d1c0aa3 | 346 | d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synt | 9e-64 | |
| d1nnha_ | 293 | d.104.1.1 (A:) Hypothetical protein PF1951 {Archae | 3e-61 | |
| d1e1oa2 | 342 | d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS | 1e-59 | |
| d1eova1 | 134 | b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspR | 3e-21 | |
| d1b8aa1 | 103 | b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS | 1e-09 | |
| d1n9wa1 | 93 | b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) | 9e-09 | |
| d1c0aa1 | 106 | b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS | 5e-08 | |
| d1l0wa1 | 104 | b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS | 1e-06 | |
| d1jjca_ | 266 | d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alph | 0.001 |
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 286 bits (732), Expect = 7e-93
Identities = 198/358 (55%), Positives = 249/358 (69%), Gaps = 9/358 (2%)
Query: 200 PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFR 259
PI +EDASRSEAE E A LP VN DTRL+ RVID+RT+ NQ IFRIQ+ V +FR
Sbjct: 1 PILLEDASRSEAEAEAA-----GLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFR 55
Query: 260 QFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFE 319
++L ++ F E+HTPKL+ SEGGS+VF + Y A LAQSPQ +KQ I DF RV+E
Sbjct: 56 EYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYE 115
Query: 320 TGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEA 379
GPVFRAE+S THRH+ EFTGLD+EM ++HY EV+D + LFV IF L E+E
Sbjct: 116 IGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIEL 175
Query: 380 VAKQYPFEPLKYKP--KTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYG 437
V KQYP E K K +RLT++EG++ML+ AG EI DL+TE+E+ LG+LV +KY
Sbjct: 176 VRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKLVRDKYD 235
Query: 438 TEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQAC 497
T+FYIL ++PL +RPFYTMP N YSNS+D F+RGEEI+SGAQRIH L ER +A
Sbjct: 236 TDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAH 295
Query: 498 GIDVK--TISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
G+ + + Y D F YG PPH G G+GLERVVM + L NIR+ SL+PRDP R+ P
Sbjct: 296 GLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPRDPKRLRP 353
|
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 304 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Score = 241 bits (617), Expect = 2e-76
Identities = 113/311 (36%), Positives = 172/311 (55%), Gaps = 8/311 (2%)
Query: 235 RVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQ 294
R + +R + ++Q+ + FR++L ++F EI TPK++ +EGGS +F +DY +
Sbjct: 2 RYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEK 61
Query: 295 SACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEV 354
A LAQSPQ + + G F RV+E PV+R E+ +T RHL E+ LDVEM ++
Sbjct: 62 RAYLAQSPQ-LYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDL 120
Query: 355 MDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEI 414
M + + L + + N E+ + +P P LT E ++LK+ +
Sbjct: 121 MRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIPR----LTHAEAKRILKE-ELGY 175
Query: 415 DPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRG 474
DL+ E+ER LG+ E++G+++ + RYP +VRPFYT P D + SFD+ RG
Sbjct: 176 PVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEEDG--TTRSFDLLFRG 233
Query: 475 EEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCG 534
EI SG QRIH E L E +A G+D + Y++ F+YG PPHGGF +G ER+ G
Sbjct: 234 LEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLG 293
Query: 535 LNNIRKTSLYP 545
L N+R +P
Sbjct: 294 LPNVRYARAFP 304
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Score = 228 bits (582), Expect = 6e-71
Identities = 126/331 (38%), Positives = 189/331 (57%), Gaps = 4/331 (1%)
Query: 223 LPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG 282
+ DTRLNNR +D+R IF+I+S V R F F+EIHTPK+IA ++EG
Sbjct: 9 KVKAELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEG 68
Query: 283 GSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLD 342
G+ +F + Y + A LA+SPQL+K++ + RV+E P+FRAE+ T RHL E +D
Sbjct: 69 GTELFPMKYFEEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSID 128
Query: 343 VEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEE 402
EM + EVM ++RL + + KEL+ FE + K R+++++
Sbjct: 129 SEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELD----ILNFELEEPKLPFPRVSYDK 184
Query: 403 GVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNS 462
+++L D G EI D++TE ER LG+ ++E Y L++YP +PFY M +
Sbjct: 185 ALEILGDLGKEIPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKP 244
Query: 463 LYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFG 522
+FD+ RG EI SG QR H + L E+ + G++ ++ Y+ +FRYG PPHGGFG
Sbjct: 245 EICRAFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFG 304
Query: 523 VGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553
+G ER++ L NIR+ L+PRD R+ P
Sbjct: 305 LGAERLIKQMLDLPNIREVILFPRDRRRLTP 335
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Score = 215 bits (547), Expect = 2e-65
Identities = 94/365 (25%), Positives = 146/365 (40%), Gaps = 45/365 (12%)
Query: 200 PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFR 259
P ++ R E E E +++ RL R +D+R Q R++ +V
Sbjct: 3 PFPVDAGWRGEEEKE-----------ASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIW 51
Query: 260 QFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQMSICGDFGRV 317
FL E FV++ TP L + EG G L QSPQL KQM + R
Sbjct: 52 DFLDREGFVQVETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRY 111
Query: 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKEL 377
F+ FR ED R +FT LD+EM +V+++ +RL +F V
Sbjct: 112 FQIARCFRDEDLRADRQ-PDFTQLDLEMSFV-EVEDVLELNERLMAHVFREALGVELP-- 167
Query: 378 EAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEID-----PLGDLNTESERKLGQLV 432
PF L Y+ R ++ L+ G PL + + E E
Sbjct: 168 ------LPFPRLSYEEAMERYGSDK--PDLRREGFRFLWVVDFPLLEWDEEEEA------ 213
Query: 433 LEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAE 492
Y + +P + P +L +D+ + G E+ G+ RIH P A
Sbjct: 214 -WTYMHHPFT-SPHPEDLPLLEKDPGRVRALA---YDLVLNGVEVGGGSIRIHDPRLQAR 268
Query: 493 RAQACGIDVKTI----STYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDP 548
+ GI + ++++ YGAPPHGG GL+R++ L G +IR+ +P++
Sbjct: 269 VFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKNK 328
Query: 549 LRIAP 553
P
Sbjct: 329 EGKDP 333
|
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Score = 210 bits (535), Expect = 9e-64
Identities = 76/329 (23%), Positives = 135/329 (41%), Gaps = 25/329 (7%)
Query: 226 VNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSA 285
++ RL R +D+R + ++++ ++ R+F+ F++I TP L + EG
Sbjct: 10 NTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARD 69
Query: 286 --VFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDV 343
V +KG+ L QSPQL KQ+ + F R ++ FR ED R EFT +DV
Sbjct: 70 YLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDV 128
Query: 344 EMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEG 403
E +V ++++ L ++ + V + + + +Y L E
Sbjct: 129 ETSFM-TAPQVREVMEALVRHLWLEVKGVDLGDFPVM--TFAEAERRYGSDKPDLRDES- 184
Query: 404 VQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSL 463
K A + + + E L + + + +
Sbjct: 185 ----KWAPLWVIDFPMFEDDGEGGLTAM-------HHPFTSPKDM---TAAELKAAPENA 230
Query: 464 YSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTI----STYIDSFRYGAPPHG 519
+N++D+ I G E+ G+ RIH + GI+ + +D+ +YG PPH
Sbjct: 231 VANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHA 290
Query: 520 GFGVGLERVVMLFCGLNNIRKTSLYPRDP 548
G GL+R+ ML G +NIR +P+
Sbjct: 291 GLAFGLDRLTMLLTGTDNIRDVIAFPKTT 319
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 201 bits (513), Expect = 3e-61
Identities = 61/322 (18%), Positives = 114/322 (35%), Gaps = 47/322 (14%)
Query: 237 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTP-------KLIAGSSEGGSAVFRL 289
++I + IQ+++ F + E F + L + G +
Sbjct: 3 VEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEV 62
Query: 290 DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAED--SYTHRHLCEFTGLDVEMEI 347
+ G L S LHKQ++I ++F P R E RH EFT LD E+E
Sbjct: 63 EIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVER 122
Query: 348 KKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQML 407
++M +++RL +F + PKT R E ++L
Sbjct: 123 A-KMEDIMRLIERLVYGLFRKAEEWTGR---------------EFPKTKRFEVFEYSEVL 166
Query: 408 KDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNS 467
++ G + ++ + + + + D +
Sbjct: 167 EEFGSDE---------------------KASQEMEEPFWIINIPREFYDREVDGFWRNYD 205
Query: 468 FDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGA-PPHGGFGVGLE 526
+ E+ SG +R E + + + G++ + Y++ + G P G G+G+E
Sbjct: 206 LILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVE 265
Query: 527 RVVMLFCGLNNIRKTSLYPRDP 548
R+V G +I + +PR P
Sbjct: 266 RLVRFIVGAKHIAEVQPFPRIP 287
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Score = 199 bits (506), Expect = 1e-59
Identities = 80/342 (23%), Positives = 141/342 (41%), Gaps = 25/342 (7%)
Query: 228 QDTRLNNRVID-IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAV 286
Q+ R R +D I ++ F ++S++ RQF+++ F+E+ TP + +
Sbjct: 2 QEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARP 61
Query: 287 FR--LDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVE 344
F + L +P+L+ + + G F RVFE FR E + RH EFT +++
Sbjct: 62 FITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGI-SVRHNPEFTMMELY 120
Query: 345 MEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKEL--EAVAKQYPFEPLKYKPKTLRLTFEE 402
M ++ +++++ + LF T+ + K PFE L + + E
Sbjct: 121 MAYADYH-DLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPET 179
Query: 403 GVQMLKDAGVEIDPLGDLN--TESERKLGQLVLE-------KYGTEFYILHRYPLAVRPF 453
+ L + + E LG++V E + + + YP V P
Sbjct: 180 DMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPL 239
Query: 454 YTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTI--------S 505
+ + + F+ FI G EI +G ++ E AER Q
Sbjct: 240 ARRNDVNPEIT-DRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDE 298
Query: 506 TYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRD 547
Y+ + YG PP G G+G++R++MLF + IR L+P
Sbjct: 299 DYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAM 340
|
| >d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 134 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 87.8 bits (217), Expect = 3e-21
Identities = 51/140 (36%), Positives = 75/140 (53%), Gaps = 13/140 (9%)
Query: 62 NNYGDVPLQELQSVNDPQTGKWSEAVNGREWT-VVGALNGSLKDQEVLIRGRVHTTRPVG 120
+NYG +PL +QS + +TG ++ V D+EVL R RVH TR G
Sbjct: 3 DNYGKLPL--IQSRDSDRTG--------QKRVKFVDLDEAKDSDKEVLFRARVHNTRQQG 52
Query: 121 NKLAFVVVRERVSTVQCLATVK-PDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA 179
LAF+ +R++ S +Q L ++SK MV++ SL+ ESIV V G+V D IK A
Sbjct: 53 ATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSA 112
Query: 180 -TQQVEVQIKKLYCVSRAAK 198
Q +E+ I K+Y +S +
Sbjct: 113 TVQNLEIHITKIYTISETPE 132
|
| >d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Score = 53.5 bits (128), Expect = 1e-09
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
+ L Q+V + G V + +G + F+ +R+R VQ T V E+ + +
Sbjct: 8 SEITEELNGQKVKVAGWVWEVKDLG-GIKFLWIRDRDGIVQI--TAPKKKVDPELFKLIP 64
Query: 156 SLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196
L +E +V V GVV A E+ +K+ ++RA
Sbjct: 65 KLRSEDVVAVEGVV----NFTPKAKLGFEILPEKIVVLNRA 101
|
| >d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Score = 50.6 bits (121), Expect = 9e-09
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 18/98 (18%)
Query: 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIV 163
QEV + G +H R +G ++ F+++R+R VQ + ++ ES +
Sbjct: 13 GQEVELLGFLHWRRDLG-RIQFLLLRDRSGVVQV------------VTGGLKLPLPESAL 59
Query: 164 DVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPI 201
V G+V VE A +EVQ K++ +S A P
Sbjct: 60 RVRGLV----VENAKAPGGLEVQAKEVEVLSP-ALEPT 92
|
| >d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Score = 48.9 bits (116), Expect = 5e-08
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
G L S Q+V + G V+ R +G L F+ +R+R VQ D + ++
Sbjct: 7 GQLRLSHVGQQVTLCGWVNRRRDLG-SLIFIDMRDREGIVQVF----FDPDRADALKLAS 61
Query: 156 SLSNESIVDVIGVVSVPDVEIKG---ATQQVEVQIKKLYCVSRA 196
L NE + V G V D + AT ++EV L ++RA
Sbjct: 62 ELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRA 105
|
| >d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Score = 45.0 bits (106), Expect = 1e-06
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
G+L + +EV++ G V+ R +G L F+ +R+R VQ P S + VR
Sbjct: 8 GSLRETHVGEEVVLEGWVNRRRDLG-GLIFLDLRDREGLVQL--VAHPASPAYATAERVR 64
Query: 156 SLSNESIVDVIGV-VSVPDVEIKGATQQVEVQIKKLYCVSRA 196
E +V G+ P+ + AT +VEV++ L ++ A
Sbjct: 65 ---PEWVVRAKGLVRLRPEPNPRLATGRVEVELSALEVLAEA 103
|
| >d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS species: Thermus thermophilus [TaxId: 274]
Score = 38.5 bits (89), Expect = 0.001
Identities = 13/92 (14%), Positives = 25/92 (27%), Gaps = 15/92 (16%)
Query: 454 YTMPCHDNSLYSNSFDVFI------RGEEIISGAQRIHIPEFLAERAQACGIDVKTISTY 507
+ + E+ + P+ A + +
Sbjct: 167 VRFQPVYFPFVEPGAQFAVWWPEGGKWLELGGAG--MVHPKVFQ----AVDAYRERLGLP 220
Query: 508 IDSFRYGAPPHGGFGVGLERVVMLFCGLNNIR 539
FG+G+ER+ ML G+ +IR
Sbjct: 221 PAYRGVTGF---AFGLGVERLAMLRYGIPDIR 249
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 553 | |||
| d1eova2 | 353 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 100.0 | |
| d1b8aa2 | 335 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 100.0 | |
| d1e1oa2 | 342 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 100.0 | |
| d1n9wa2 | 304 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 100.0 | |
| d1l0wa3 | 356 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 100.0 | |
| d1c0aa3 | 346 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 100.0 | |
| d1nnha_ | 293 | Hypothetical protein PF1951 {Archaeon Pyrococcus f | 100.0 | |
| d1eova1 | 134 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 99.91 | |
| d1e1oa1 | 143 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 99.84 | |
| d1b8aa1 | 103 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 99.82 | |
| d1c0aa1 | 106 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 99.78 | |
| d1l0wa1 | 104 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 99.78 | |
| d1n9wa1 | 93 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 99.78 | |
| d1jjca_ | 266 | Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS | 99.36 | |
| d12asa_ | 327 | Asparagine synthetase {Escherichia coli [TaxId: 56 | 98.8 | |
| d1z7ma1 | 318 | ATP phosphoribosyltransferase regulatory subunit H | 98.71 | |
| d1qe0a2 | 325 | Histidyl-tRNA synthetase (HisRS) {Staphylococcus a | 98.6 | |
| d1kmma2 | 322 | Histidyl-tRNA synthetase (HisRS) {Escherichia coli | 98.49 | |
| d1h4vb2 | 324 | Histidyl-tRNA synthetase (HisRS) {Thermus thermoph | 98.32 | |
| d1wu7a2 | 327 | Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop | 98.3 | |
| d1nyra4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a | 97.72 | |
| d1qf6a4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Escherichia coli | 97.68 | |
| d1nj8a3 | 268 | Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc | 97.39 | |
| d1hc7a2 | 272 | Prolyl-tRNA synthetase (ProRS) {Thermus thermophil | 97.33 | |
| d1seta2 | 311 | Seryl-tRNA synthetase (SerRS) {Thermus thermophilu | 97.09 | |
| d1b76a2 | 331 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 97.02 | |
| d1nj1a3 | 265 | Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth | 96.99 | |
| d1jmca1 | 116 | Replication protein A 70 KDa subunit (RPA70) {Huma | 96.11 | |
| d1usya_ | 275 | ATP phosphoribosyltransferase regulatory subunit H | 95.82 | |
| d1nnxa_ | 106 | Hypothetical protein YgiW {Escherichia coli [TaxId | 94.63 | |
| d2pi2a1 | 128 | Replication protein A 32 KDa subunit (RPA32) fragm | 93.24 | |
| d1o7ia_ | 115 | Archaeal ssDNA-binding protein {Archaeon Sulfolobu | 93.03 | |
| d2pi2e1 | 115 | Replication protein A 14 KDa (RPA14) subunit {Huma | 92.37 | |
| d1gm5a2 | 180 | RecG "wedge" domain {Thermotoga maritima [TaxId: 2 | 88.01 | |
| d3ulla_ | 115 | ssDNA-binding protein {Human (Homo sapiens), mitoc | 85.6 | |
| d1atia2 | 394 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 84.0 | |
| d1jjcb5 | 207 | Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, | 82.46 | |
| d1se8a_ | 231 | ssDNA-binding protein {Deinococcus radiodurans [Ta | 80.32 |
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.6e-90 Score=723.72 Aligned_cols=349 Identities=56% Similarity=0.941 Sum_probs=323.4
Q ss_pred CCccccccccHHHHHHhhhcCCCCCCCCccccccccceeeccHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC
Q 008808 200 PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS 279 (553)
Q Consensus 200 P~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~Rl~~R~LdLr~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~ 279 (553)
|+.+.|+++++...++ ...+.+|.|+||+|||||||++.++++|++||+|+++||+||.++||+||+||+|++++
T Consensus 1 ~~~~~~~~~~~~~~~~-----~~~~~~~~e~r~~~R~lDlr~~~~~~ilr~Rs~i~~~iR~ff~~~gflEV~TPiL~~~~ 75 (353)
T d1eova2 1 PILLEDASRSEAEAEA-----AGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAP 75 (353)
T ss_dssp SSCHHHHTSCHHHHHH-----TTCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC
T ss_pred CcccccccCCcccccc-----cCCCCCCHHHHhhhhHHhhCCHhHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCC
Confidence 6778888887665432 45667999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccceeecCCCCceecccChhhHhhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHH
Q 008808 280 SEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVD 359 (553)
Q Consensus 280 ~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e 359 (553)
++|++++|.++|++.++||+||||||||+||++|++||||||||||||++++.|||||||||||||+|.++|+++|+++|
T Consensus 76 ~eg~~~~f~~~~~~~~~yL~~Spel~lk~ll~~g~~~vf~I~~~FR~E~~~~~rH~pEFtmLE~y~a~~d~~~~i~~~~e 155 (353)
T d1eova2 76 SEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLS 155 (353)
T ss_dssp SSSSSCCCEEEETTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHH
T ss_pred CcchhccccceeeCCcceeccchhhhhhhhhhcccccceeechhhhccccccccccchhcccccccccchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888999999999999999877999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHhhhcCCCccccC--CCCCcccCHHHHHHHHHHcCCCCCCCCCCCcHHHHHHhHHHHHHhC
Q 008808 360 RLFVTIFDGLNNVCKKELEAVAKQYPFEPLKY--KPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYG 437 (553)
Q Consensus 360 ~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~--~~~~~~i~~~ea~~ll~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~ 437 (553)
+|+.+++..+..++...++.+...++...... ..++.++++.+++++|++.+.......++.+..++.+++++.++++
T Consensus 156 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~ea~~~l~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 235 (353)
T d1eova2 156 ELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKLVRDKYD 235 (353)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHSCCCCCCCCTTCCCEEEEHHHHHHHHHHTTCCCCTTCCCCHHHHHHHHHHHHHHSC
T ss_pred HHHhhhccccchhhhhhhhhhcccCccceeeccCCCceeeeehHhhHHHHHHHhhhcccccccchhhHHHHHHHHHhhcc
Confidence 99999999999888887777766555544332 3368899999999999999888777888999999999999999999
Q ss_pred CccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCChh--cHHHHHHHhhcCC
Q 008808 438 TEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVK--TISTYIDSFRYGA 515 (553)
Q Consensus 438 ~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~--~~~~yl~a~~~G~ 515 (553)
.+++||+|||.+++|||++++++++++++|||||++|+||||||+|+||+++|++||+++|++++ .++|||+|++||+
T Consensus 236 ~~~~~i~~~P~~~~p~~~~~~~~~~~~a~rfeL~~~G~El~nG~~e~~d~~~~~~r~~~~~~~~~~~~~~~yl~al~~G~ 315 (353)
T d1eova2 236 TDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGC 315 (353)
T ss_dssp CSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCC
T ss_pred CCcccccCCcHHHhhhhhCCChhhhhhhhceeeeeeceEEcceecccCCHHHHHHHHHHcCCChhhhHHHHHHHHhHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999998875 4899999999999
Q ss_pred CCcceeeecHHHHHHHHcCCCCccccccccCCCCCCCC
Q 008808 516 PPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 516 pP~~G~GiGidRLvm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
|||||||||||||+|+++|++|||||++|||+|+||.|
T Consensus 316 PP~~G~glGiDRL~m~l~~~~~Irdvi~FPr~~~~~~p 353 (353)
T d1eova2 316 PPHAGGGIGLERVVMFYLDLKNIRRASLFPRDPKRLRP 353 (353)
T ss_dssp CCEEEEEEEHHHHHHHHTTCSSGGGGCSSCCBTTBCCC
T ss_pred CCCceeeeHHHHHHHHHhCCCcHHheeCCCCCCCCCCC
Confidence 99999999999999999999999999999999999998
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Probab=100.00 E-value=3e-81 Score=650.52 Aligned_cols=326 Identities=38% Similarity=0.654 Sum_probs=304.4
Q ss_pred CCCCccccccccceeeccHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChh
Q 008808 224 PRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQ 303 (553)
Q Consensus 224 ~~~~~e~Rl~~R~LdLr~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPq 303 (553)
...+.++||+|||||||++.++++|++||+|++.||+||.++||+||+||+|+.++++|++.+|.++++++++||++|||
T Consensus 10 ~~~~~~~r~~~R~ldlr~~~~~~~l~~Rs~i~~~iR~ff~~~gflEV~TPil~~~~~~~~~~~f~~~~~~~~~yL~~SpE 89 (335)
T d1b8aa2 10 VKAELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLAESPQ 89 (335)
T ss_dssp SCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCCSSSSSCCEEEETTEEEEECSCSH
T ss_pred CCCCHHHHhhchhheeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCccCCchhhhhccccccccccccccChH
Confidence 34688999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred hHhhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhc
Q 008808 304 LHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQ 383 (553)
Q Consensus 304 l~lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~ 383 (553)
+|||++|++|++||||||||||||++++.||++||||+|+|+++..+++++|+++++++..+...+...+..++..+...
T Consensus 90 ~~lkrll~~g~~~if~i~~~FR~e~~~~~rh~~Ef~~le~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 169 (335)
T d1b8aa2 90 LYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFE 169 (335)
T ss_dssp HHHHHGGGTTCCEEEEEEEEECCCSSCCSSCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCC
T ss_pred HHHHHHHhhhhhhHHHhhcccccccccccccchHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccchhhhhccc
Confidence 99999999999999999999999998888999999999999998888999999999999999999887777776655432
Q ss_pred CCCccccCCCCCcccCHHHHHHHHHHcCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCc
Q 008808 384 YPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSL 463 (553)
Q Consensus 384 ~~~~~~~~~~~~~~i~~~ea~~ll~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~ 463 (553)
. .....+|+++++.+++++|++.|.+.....++.....+.+..++.+..+.+++||+|||.+++|||...++++++
T Consensus 170 ~----~~~~~~~~r~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fi~~~P~~~~pl~~~~~~~~~~ 245 (335)
T d1b8aa2 170 L----EEPKLPFPRVSYDKALEILGDLGKEIPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNKPE 245 (335)
T ss_dssp C----CCCCSSCCEEEHHHHHHHHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHCCSEEEEESCBGGGSCTTBCEETTEEE
T ss_pred c----ccCCCCcccccHHHHHHHHHhhccccCcccccccccccceeeeeecccccccceeecChHHhhhccccccCCCcH
Confidence 1 223457899999999999999999998888899898888888888888888888999999999999887778899
Q ss_pred ceeEEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCcccccc
Q 008808 464 YSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSL 543 (553)
Q Consensus 464 ~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~ 543 (553)
+++|||||++|+||+|||+|+||+++|++|++.+|++++.++|||+|++||+|||||||||||||+|++||++|||||++
T Consensus 246 ~a~rfel~~~G~El~nG~~e~~~~~~~~~r~~~~~~~~e~~e~yl~al~~G~Pp~~G~glGiDRLvm~l~~~~~IrdVi~ 325 (335)
T d1b8aa2 246 ICRAFDLEYRGVEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVIL 325 (335)
T ss_dssp EESEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTTSBCCCCEEEEEEEHHHHHHHHTTCSCGGGGSS
T ss_pred HHHhhccccCceeeecccchhcCHHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCceeeeHHHHHHHHHhCCCcHHheEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCC
Q 008808 544 YPRDPLRIAP 553 (553)
Q Consensus 544 FPr~p~rl~p 553 (553)
|||+++||+|
T Consensus 326 FPr~~~~~~p 335 (335)
T d1b8aa2 326 FPRDRRRLTP 335 (335)
T ss_dssp SCCBTTBCCC
T ss_pred CCCCCCCCCC
Confidence 9999999998
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Probab=100.00 E-value=4.1e-77 Score=620.95 Aligned_cols=310 Identities=25% Similarity=0.429 Sum_probs=255.8
Q ss_pred Cccccccccceee-ccHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee--cCCCCceecccChh
Q 008808 227 NQDTRLNNRVIDI-RTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQ 303 (553)
Q Consensus 227 ~~e~Rl~~R~LdL-r~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~SPq 303 (553)
|+|+||+|||||| |++.++++|++||+|++++|+||.++||+||+||+|++++++|++.+|.+ +|++.++||+||||
T Consensus 1 d~~~Rl~~R~lDl~r~~~~~~~~r~Rs~i~~~iR~ff~~~gFiEV~TPil~~~~~~~~~~~f~~~~~~~~~~~yL~~Spq 80 (342)
T d1e1oa2 1 DQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPE 80 (342)
T ss_dssp CTTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEETTTTEEEEECSCSH
T ss_pred ChHhhhhcchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCccccCCCCCCcceeecccCCCcccccchhhH
Confidence 5799999999999 77999999999999999999999999999999999998888888899976 68999999999999
Q ss_pred hHhhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhc
Q 008808 304 LHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQ 383 (553)
Q Consensus 304 l~lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~ 383 (553)
||||++|++|++|||+||||||+|++ +.||+||||||||||+|. +++|+|+++|+|+++++..+.+.+.. .
T Consensus 81 l~~k~~l~~g~~~vf~i~p~FR~E~~-~~rHl~EFtmlE~e~a~~-~~~d~m~~~e~l~~~i~~~~~~~~~~-------~ 151 (342)
T d1e1oa2 81 LYLKRLVVGGFERVFEINRNFRNEGI-SVRHNPEFTMMELYMAYA-DYHDLIELTESLFRTLAQEVLGTTKV-------T 151 (342)
T ss_dssp HHHHHHHHHTCCEEEEEEEEECCCCC-CC-CCSEEEEEEEEEESC-CHHHHHHHHHHHHHHHHHHHHSSSEE-------E
T ss_pred HHHHHHhhhcccceeeeccccccccc-cccchHHHHHHHHHHHhh-hhhhHHHhhhHHHHHHHHHHhCcchh-------h
Confidence 99999999999999999999999987 679999999999999998 69999999999999999988765432 2
Q ss_pred CCCccccCCCCCcccCHHHHHHHH-------------------HHcCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEe
Q 008808 384 YPFEPLKYKPKTLRLTFEEGVQML-------------------KDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILH 444 (553)
Q Consensus 384 ~~~~~~~~~~~~~~i~~~ea~~ll-------------------~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~ 444 (553)
+.....++..++.++++.+++..+ +..|+..+....+.......+..++.+.+.. ++||+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~fi~ 230 (342)
T d1e1oa2 152 YGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQ-PTFIT 230 (342)
T ss_dssp ETTEEEETTSCCEEEEHHHHHHHHSTTCCGGGGGSHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGGGCCS-CEEEE
T ss_pred ccchhcccCCchhhhhHHHHHHHHhccccHhhhhhhHHHHHHHHHcCCCcccccchhHHHHHHHHHhhHhhccC-CCcCC
Confidence 223334455677777777766432 2334433322222222223333334444444 56678
Q ss_pred ccCCcCCCCCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHH------cCCChhc--HHHHHHHhhcCCC
Q 008808 445 RYPLAVRPFYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQA------CGIDVKT--ISTYIDSFRYGAP 516 (553)
Q Consensus 445 ~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~------~g~~~~~--~~~yl~a~~~G~p 516 (553)
|||..++||| +.+++|+.++++||||++|+||+|||+|+||+++|.+||++ .+.++.. ++|||+|++||+|
T Consensus 231 ~~P~~~~~f~-~~~~~~~~~~~~fdl~~~g~El~~G~~r~~d~~~~~~r~~~~~~~~~~~~~~~~~~d~~yl~a~~~G~p 309 (342)
T d1e1oa2 231 EYPAEVSPLA-RRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLP 309 (342)
T ss_dssp CCBGGGCTTB-CBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHHHHHHHHCC
T ss_pred CCccccChhh-ccccccchhhhhhhcccCCEeecCCccccCCHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHhhCCCC
Confidence 9999999996 45667889999999999999999999999999999999853 3444433 4899999999999
Q ss_pred CcceeeecHHHHHHHHcCCCCccccccccCC
Q 008808 517 PHGGFGVGLERVVMLFCGLNNIRKTSLYPRD 547 (553)
Q Consensus 517 P~~G~GiGidRLvm~l~g~~nIrdv~~FPr~ 547 (553)
||||||||||||+|++||++|||||++|||+
T Consensus 310 Ph~G~glG~dRlvm~l~g~~nIrdvi~FPr~ 340 (342)
T d1e1oa2 310 PTAGLGIGIDRMIMLFTNSHTIRDVILFPAM 340 (342)
T ss_dssp SEEEEEEEHHHHHHHHHTCSSGGGTSSSCCC
T ss_pred CccchhHHHHHHHHHHhCCCcHHHhccCCCC
Confidence 9999999999999999999999999999985
|
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Probab=100.00 E-value=4.4e-75 Score=596.24 Aligned_cols=304 Identities=38% Similarity=0.657 Sum_probs=237.5
Q ss_pred ccceeeccHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceeecCCCCceecccChhhHhhhcccCC
Q 008808 234 NRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGD 313 (553)
Q Consensus 234 ~R~LdLr~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~SPql~lk~li~~g 313 (553)
+||||||++..+++|++||+|++.||+||.++||+||+||+|+.++++|++.+|.++|+++++||++|||+||| ++++|
T Consensus 1 yR~ldlr~~~~~~~l~~Rs~i~~~iR~ff~~~gf~Ev~TP~l~~~~~e~~~~~f~~~~~~~~~~L~~Spel~k~-ll~~g 79 (304)
T d1n9wa2 1 YRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEKRAYLAQSPQLYKQ-IMVGV 79 (304)
T ss_dssp CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC----------------------------CHHHHH-HHHHH
T ss_pred CCeEEecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCCCCCceECCcccccchhccccHHHHHH-Hhhcc
Confidence 69999999999999999999999999999999999999999998888988899999999999999999999977 56888
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCC
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKP 393 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~ 393 (553)
++|||+||||||||++.+.||+|||||||||+++..+++++|+++|++++.++..+.+.+...+..++... .....
T Consensus 80 ~~~if~i~~~FR~ee~~~~rh~~EF~~le~~~~~~~~~~~~~~l~E~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 155 (304)
T d1n9wa2 80 FERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATW----PSFPQ 155 (304)
T ss_dssp HSEEEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCC----CCCSS
T ss_pred cccceeehhhcccccccccccccHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccce----ecccc
Confidence 99999999999999887889999999999999998889999999999999999999887776666543322 23344
Q ss_pred CCcccCHHHHHHHHHHcCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCcceeEEEEEeC
Q 008808 394 KTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSNSFDVFIR 473 (553)
Q Consensus 394 ~~~~i~~~ea~~ll~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~ 473 (553)
++.++++.|++++++.. ...+...+++...++.|..++.++.+.+++||+|||.+++|||..+ .++++++|||||++
T Consensus 156 ~~~~~~~~e~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fi~~~P~~~~p~~~~~--~~~~~a~rfel~~~ 232 (304)
T d1n9wa2 156 DIPRLTHAEAKRILKEE-LGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYP--EEDGTTRSFDLLFR 232 (304)
T ss_dssp SCCEEEHHHHHHHHHHT-SCCCCCSSCCHHHHHHHHHHHHHHTCCSEEEEECCBGGGSCTTBCB--CTTSBBSEEEEEET
T ss_pred hhhhhhHHHHHHHHHHH-hCCCcCCCccHHHHHHHHHHHHhhcCCceEEEeCChhhhCchhhcc--cccceeehhccccC
Confidence 67899999999987763 3444556788899999999999999989999999999999998643 44569999999999
Q ss_pred CEEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCCCCcccccccc
Q 008808 474 GEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYP 545 (553)
Q Consensus 474 G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~~nIrdv~~FP 545 (553)
|+||+|||+|+||+++|++||+++|++++.++|||+|++||+|||||||||+|||+|++||.+|||||++||
T Consensus 233 G~El~nG~~e~~d~~~l~~r~~~~~~~~e~~~~yl~al~~G~PP~~G~glGiDRL~m~l~g~~~Irdv~~FP 304 (304)
T d1n9wa2 233 GLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFP 304 (304)
T ss_dssp TEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGBCCCSEEEEEEEHHHHHHHHTTCSSGGGGCSCC
T ss_pred cEEEeccccccCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCceeehHHHHHHHHHhCCCcHHheecCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=100.00 E-value=5.4e-75 Score=607.39 Aligned_cols=299 Identities=27% Similarity=0.438 Sum_probs=248.2
Q ss_pred CCccccccccceeeccHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee--cCCCCceecccChh
Q 008808 226 VNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQ 303 (553)
Q Consensus 226 ~~~e~Rl~~R~LdLr~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~SPq 303 (553)
+++|+||||||||||++..+++||+||+|+++||+||.++||+||+||+|++++++|++..|.+ +|++..+||+||||
T Consensus 18 ~~~~~Rl~~R~LdLR~~~~~~ilr~Rs~i~~~iR~ff~~~gfiEV~TP~L~~~~~eg~~~~~~~~~~~~~~~~yL~~Spe 97 (356)
T d1l0wa3 18 ASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQ 97 (356)
T ss_dssp CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEEECTTSTTEEEECCSCSH
T ss_pred cCHHHHhhchhhhhCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCcccccchhhhhcccccccCCCcChh
Confidence 5789999999999999999999999999999999999999999999999998888888877764 78899999999999
Q ss_pred hHhhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhc
Q 008808 304 LHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQ 383 (553)
Q Consensus 304 l~lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~ 383 (553)
||||+++++|++|||+||||||||+++ .||+|||||||||++|. +|+++|+++|+|++++++.+.+.
T Consensus 98 l~lk~ll~~g~~~Vf~i~~~FRaE~~~-t~H~~EFtmLE~e~~~~-~~~~~m~~~E~li~~v~~~~~~~----------- 164 (356)
T d1l0wa3 98 LFKQMLMVAGLDRYFQIARCFRDEDLR-ADRQPDFTQLDLEMSFV-EVEDVLELNERLMAHVFREALGV----------- 164 (356)
T ss_dssp HHHHHHHHTTCSEEEEEEEEECCCCCC-SSCCSEEEEEEEEEESC-CHHHHHHHHHHHHHHHHHHHTCC-----------
T ss_pred HHHHHhhhcccCcEEEEeccccccccC-CcchhhhhHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHhCC-----------
Confidence 999999999999999999999999985 58999999999999998 69999999999999998765421
Q ss_pred CCCccccCCCCCcccCHHHHHHHHHHcCCCC-------CCCCCCC----cHHHHHHhHHHHHHhCCccEEEeccCCcCCC
Q 008808 384 YPFEPLKYKPKTLRLTFEEGVQMLKDAGVEI-------DPLGDLN----TESERKLGQLVLEKYGTEFYILHRYPLAVRP 452 (553)
Q Consensus 384 ~~~~~~~~~~~~~~i~~~ea~~ll~~~g~~~-------~~~~dl~----~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~p 452 (553)
.+..+|++++|.+|+..+.....+. .+..|+. .+.+..+ .+..++ ++++||....+
T Consensus 165 ------~~~~~f~r~~~~~a~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~------~~~~~~-f~~~~p~~~~~ 231 (356)
T d1l0wa3 165 ------ELPLPFPRLSYEEAMERYGSDKPDLRREGFRFLWVVDFPLLEWDEEEEAW------TYMHHP-FTSPHPEDLPL 231 (356)
T ss_dssp ------CCCSSCCEEEHHHHHHHHSSSSCCCSCCSCCEEEEECCBSBCCCTTTSCC------CBSSCT-TBCBCSTTTTH
T ss_pred ------CCCCCCCcchHHhhHHHHhcCcHhHHHHhhhhhhccccccccccchhcce------eeeeCC-cccCChhhhch
Confidence 1224789999999986542221111 0011110 0000000 111223 35678877654
Q ss_pred CCCcccCCCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCCh----hcHHHHHHHhhcCCCCcceeeecHHHH
Q 008808 453 FYTMPCHDNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDV----KTISTYIDSFRYGAPPHGGFGVGLERV 528 (553)
Q Consensus 453 fy~~~~~~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~----~~~~~yl~a~~~G~pP~~G~GiGidRL 528 (553)
++ ...++.++++||||++|+||||||+|+||+++|++||+..|++. +.++|||+|++||+|||||||||+|||
T Consensus 232 ~~---~~~~~~~a~~FdL~~~G~ElanG~~r~~d~~~~~~r~~~~~~~~~~~~~~~~~yl~a~~~G~PP~~G~glGldRL 308 (356)
T d1l0wa3 232 LE---KDPGRVRALAYDLVLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRL 308 (356)
T ss_dssp HH---HCGGGCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBTCCCEEEEEEEHHHH
T ss_pred hh---cCCCcceeeeeecccCCEEeeccEEEeCcHHHHHHHHHHHcCCchhhHHHHHHHHHHhhCCCCCcceEEEcHHHH
Confidence 32 23456689999999999999999999999999999999888876 347899999999999999999999999
Q ss_pred HHHHcCCCCccccccccCCCCCCCC
Q 008808 529 VMLFCGLNNIRKTSLYPRDPLRIAP 553 (553)
Q Consensus 529 vm~l~g~~nIrdv~~FPr~p~rl~p 553 (553)
+|++||++|||||++|||||+|+.|
T Consensus 309 lm~l~g~~~Irdvi~FPR~~~r~~p 333 (356)
T d1l0wa3 309 LALMTGSPSIREVIAFPKNKEGKDP 333 (356)
T ss_dssp HHHHHTCSSGGGGSSSCCCTTSCBT
T ss_pred HHHHcCCCcHHheecCCCCCCCCCc
Confidence 9999999999999999999999988
|
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3e-74 Score=599.70 Aligned_cols=303 Identities=24% Similarity=0.393 Sum_probs=245.5
Q ss_pred CCccccccccceeeccHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccCCCCCccceee--cCCCCceecccChh
Q 008808 226 VNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQ 303 (553)
Q Consensus 226 ~~~e~Rl~~R~LdLr~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~SPq 303 (553)
.+.|+||||||||||++..+++|++||+|+++||+||.++||+||+||+|++++++|++..|.. .+++..+||+||||
T Consensus 10 ~~~e~Rl~~R~LdLr~~~~~~ilr~Rs~i~~~iR~ff~~~gFlEV~TPiL~~~~~~g~~~~~~~~~~~~~~~~~L~~Spe 89 (346)
T d1c0aa3 10 NTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQ 89 (346)
T ss_dssp CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEEECSSSTTCEEECCSCSH
T ss_pred CCHHHHhhchHHhhCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCccccccccccccCCCccccCCcCHH
Confidence 5779999999999999999999999999999999999999999999999998888887776654 45789999999999
Q ss_pred hHhhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhc
Q 008808 304 LHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQ 383 (553)
Q Consensus 304 l~lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~ 383 (553)
||||+|+++|++|||+||||||||++ +.||+||||||||||+|. +|+++|+++|+|+++++..+.+.
T Consensus 90 l~lk~ll~~g~~~Vf~i~~~FR~E~~-~~~H~~EFtmLE~e~a~~-~~~~~m~~~E~li~~l~~~~~~~----------- 156 (346)
T d1c0aa3 90 LFKQLLMMSGFDRYYQIVKCFRDEDL-RADRQPEFTQIDVETSFM-TAPQVREVMEALVRHLWLEVKGV----------- 156 (346)
T ss_dssp HHHHHHHHTTCCEEEEEEEEECCCCC-BTTBCSEEEEEEEEEESC-CHHHHHHHHHHHHHHHHHHHHSC-----------
T ss_pred HHHHHHhhcCCCceEEEeeecccccc-CchhhhHhhhhccccccc-cHhHhHHHHHHHHHHHHHHHhCC-----------
Confidence 99999999999999999999999998 557779999999999998 69999999999999999876521
Q ss_pred CCCccccCCCCCcccCHHHHHHHHHHcCCCCCCCCCCCcHHHHHHhHHHHHHhCCc----cEEEeccCCcCCCCCCcccC
Q 008808 384 YPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTE----FYILHRYPLAVRPFYTMPCH 459 (553)
Q Consensus 384 ~~~~~~~~~~~~~~i~~~ea~~ll~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~----~~ii~~~P~~~~pfy~~~~~ 459 (553)
+ ..+|+++++.+++..+.....+......+..... ....+.+....+ +..+.++|....|++. ...
T Consensus 157 ------~-~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~-~~~ 226 (346)
T d1c0aa3 157 ------D-LGDFPVMTFAEAERRYGSDKPDLRDESKWAPLWV--IDFPMFEDDGEGGLTAMHHPFTSPKDMTAAEL-KAA 226 (346)
T ss_dssp ------C-CCSCCEEEHHHHHHHHSCSSCCTTCSSCCCEEEE--ECCBSEEECSSSCEEESSCTTBCBSSCCHHHH-HHS
T ss_pred ------c-CCccceeeHHHHHHHhcccccchhhHhhhhhhcc--ccccccchhcccceeeeEeeccccchhhHHHh-ccC
Confidence 0 1367899999987533221111111111100000 000000000111 1122356777888854 344
Q ss_pred CCCcceeEEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCCh----hcHHHHHHHhhcCCCCcceeeecHHHHHHHHcCC
Q 008808 460 DNSLYSNSFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDV----KTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGL 535 (553)
Q Consensus 460 ~~~~~~~~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~----~~~~~yl~a~~~G~pP~~G~GiGidRLvm~l~g~ 535 (553)
.++.++++||+|++|+||+|||+|+||+++|++||++.|+++ +.+.|||+|++||||||||||||||||+|++||+
T Consensus 227 ~~~~~a~~fdl~~~G~El~nG~~rl~d~~~~~~r~~~~~~~~~~~~e~~~~ylda~~~G~PP~~G~glGldRL~m~l~g~ 306 (346)
T d1c0aa3 227 PENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGT 306 (346)
T ss_dssp CTTCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTTCCCEEEEEEEHHHHHHHHHTC
T ss_pred CccccccccccCcCCEEEechhhhhchHHHHHHHHHHhCccccchHHHHHHHHHHHHCCCCCceeEeEHHHHHHHHHcCC
Confidence 567899999999999999999999999999999999999987 4578999999999999999999999999999999
Q ss_pred CCccccccccCCCCCC
Q 008808 536 NNIRKTSLYPRDPLRI 551 (553)
Q Consensus 536 ~nIrdv~~FPr~p~rl 551 (553)
+|||||++|||+|+..
T Consensus 307 ~~Irdvi~FPRt~~~~ 322 (346)
T d1c0aa3 307 DNIRDVIAFPKTTAAA 322 (346)
T ss_dssp SCGGGGSSSCCCTTSC
T ss_pred CcHHheecCCCCCCCC
Confidence 9999999999999865
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.4e-71 Score=564.22 Aligned_cols=278 Identities=21% Similarity=0.349 Sum_probs=238.9
Q ss_pred ceeeccHHhHHHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC-------CCCCccceeecCCCCceecccChhhHhhh
Q 008808 236 VIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS-------SEGGSAVFRLDYKGQSACLAQSPQLHKQM 308 (553)
Q Consensus 236 ~LdLr~~~~~~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~-------~egga~~F~v~~~~~~~~L~~SPql~lk~ 308 (553)
-||||++..+++|++||+|++++|+||.++||+||+||+|++.. .+.++.+|.++|||+++||+||||||||+
T Consensus 2 ~l~l~~~~~~~il~~Rs~i~~~iR~ff~~~gf~EV~tPil~~~~~~~~~~~~~~~~~~~~~~~~~~~~yL~~SPel~lk~ 81 (293)
T d1nnha_ 2 AVEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQL 81 (293)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCCCCCCEEEETTEEEEECSCSHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcCCcccccCCCCCCccccCccccccccCCCceeecccChhhhHHH
Confidence 48999999999999999999999999999999999999987532 22356789999999999999999999999
Q ss_pred cccCCCceeEEEeceecCCCC--CCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCC
Q 008808 309 SICGDFGRVFETGPVFRAEDS--YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPF 386 (553)
Q Consensus 309 li~~g~~rVfeIg~~FR~E~~--~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~ 386 (553)
+|++|++||||||||||||++ +|+||||||||||||++|. +|+|+|+++|+|++++++.+.+.+..
T Consensus 82 lla~g~~~Vf~I~~~FR~E~~~s~t~RH~~EFtmLE~e~~~~-d~~d~m~~~e~li~~~~~~~~~~~~~----------- 149 (293)
T d1nnha_ 82 AIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERA-KMEDIMRLIERLVYGLFRKAEEWTGR----------- 149 (293)
T ss_dssp HHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETC-CHHHHHHHHHHHHHHHHHHHHHHHSS-----------
T ss_pred HHHhccccceeechhhhcCcccCCCCccchhhhhhccccccc-cHHHHHHHHHHHHHHHHHHHHHHhCc-----------
Confidence 999999999999999999964 4789999999999999997 79999999999999999887643321
Q ss_pred ccccCCCCCcccCHHHHHHHHHHcCCCCCCCCCCCcHHHHHHhHHHHHHhCCccEEEeccCCcCCCCCCcccCCCCccee
Q 008808 387 EPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCHDNSLYSN 466 (553)
Q Consensus 387 ~~~~~~~~~~~i~~~ea~~ll~~~g~~~~~~~dl~~~~e~~l~~~v~~~~~~~~~ii~~~P~~~~pfy~~~~~~~~~~~~ 466 (553)
.+....+|++++|.|+++ ..|.+ .. ....+..+ +++++|| ++||.++++ +...+.
T Consensus 150 -~~~~~~~~~~~~~~eal~---~~g~d------------~~----~~~~~~~p-~~~~~~p---~~f~~~~~~-~~~~~~ 204 (293)
T d1nnha_ 150 -EFPKTKRFEVFEYSEVLE---EFGSD------------EK----ASQEMEEP-FWIINIP---REFYDREVD-GFWRNY 204 (293)
T ss_dssp -CCCCCSSCEEEEHHHHHH---HTSSH------------HH----HHHHCSSC-EEEECCC---CCTTBCEET-TEECEE
T ss_pred -ccccCCccccccHHhhhc---ccCcc------------cc----cccccccc-eeccccc---hhhcccccc-cccccc
Confidence 233346789999999874 44432 11 12234455 5567899 468866543 455788
Q ss_pred EEEEEeCCEEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcC-CCCcceeeecHHHHHHHHcCCCCcccccccc
Q 008808 467 SFDVFIRGEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYG-APPHGGFGVGLERVVMLFCGLNNIRKTSLYP 545 (553)
Q Consensus 467 ~fdl~~~G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G-~pP~~G~GiGidRLvm~l~g~~nIrdv~~FP 545 (553)
+|+++++|+||+|||+|+|||++|++||+++|++++.++|||+|++|| ||||||||||||||+|+++|++|||||++||
T Consensus 205 ~~~l~~~g~Elang~~el~d~~~~~~r~~~~gl~~e~~~~yl~a~~~G~mPP~~G~glGiDRL~m~l~g~~~Irdv~~FP 284 (293)
T d1nnha_ 205 DLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFP 284 (293)
T ss_dssp EEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHHHHTTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSC
T ss_pred eeEecccCcccccccccccCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCCeEeehHHHHHHHHhCCCcHHheecCC
Confidence 888888999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCCCC
Q 008808 546 RDPLR 550 (553)
Q Consensus 546 r~p~r 550 (553)
|+|+.
T Consensus 285 R~~g~ 289 (293)
T d1nnha_ 285 RIPGI 289 (293)
T ss_dssp CCTTS
T ss_pred CCCCC
Confidence 99974
|
| >d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=4.3e-24 Score=191.05 Aligned_cols=128 Identities=38% Similarity=0.581 Sum_probs=109.9
Q ss_pred cCCcCccchhhhhccCCCCCCcccccccCcceEEecccc-CCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEe
Q 008808 61 ANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGALN-GSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLA 139 (553)
Q Consensus 61 ~~~yg~~~~~~~~~~~~pyphkf~~~~~~~~~~~i~~l~-~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~ 139 (553)
+++||++|+.+++.. +.+...|+.+.++. ..+.|++|+|+|||+++|.+|+||+|++|||+++++||++
T Consensus 2 ~~~yG~lp~~~s~~~----------~~~~~~r~~i~dl~~~~~~g~~V~v~GwV~~~R~~G~kl~F~~LrD~sg~iQ~~v 71 (134)
T d1eova1 2 KDNYGKLPLIQSRDS----------DRTGQKRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLV 71 (134)
T ss_dssp CSSEEECCCCCCCGG----------GCCCCCCCCGGGCCTTTTTTCEEEEEEEEEEEEECSSSEEEEEEEETTEEEEEEE
T ss_pred hhhcCCCcccccccc----------ccCCcEEEEeccccchhcCCCEEEEEEEEEEEEeCCCcEEEEEEEcCCCcEEEEE
Confidence 579999999888751 13445678888875 4688999999999999999998899999999999999999
Q ss_pred ecCCCC-cchHHHHHHhcCCCCceEEEEEEEecCCCccCCCc-eeEEEEEeEEEEeecCCC
Q 008808 140 TVKPDS-VSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGAT-QQVEVQIKKLYCVSRAAK 198 (553)
Q Consensus 140 ~~~~~~-~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t-~~~Ei~v~~i~~ls~~~~ 198 (553)
..+... .+.+|++|+++|+.||+|.|+|+|.+++.++.+++ +++||++++|+|||+|..
T Consensus 72 ~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~Ei~v~~i~vls~a~~ 132 (134)
T d1eova1 72 KANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPE 132 (134)
T ss_dssp ECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCCS
T ss_pred EeccccchhHHHHHHHhcCCCCCEEEEEEEEEeCCccCCCCCCCcEEEEEEEEEEEeCCCC
Confidence 976433 56789999999999999999999999988877765 459999999999999864
|
| >d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Probab=99.84 E-value=1.8e-21 Score=175.26 Aligned_cols=116 Identities=16% Similarity=0.223 Sum_probs=96.1
Q ss_pred cCCCCCCcccccccCcce-EEeccccC---CCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcch-H
Q 008808 75 VNDPQTGKWSEAVNGREW-TVVGALNG---SLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSK-E 149 (553)
Q Consensus 75 ~~~pyphkf~~~~~~~~~-~~i~~l~~---~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~-~ 149 (553)
|. ||||+|+++++..+. .++..+.. ...+..|+|+|||+++|.+| |++|++|+|++++||++++.+. .++ .
T Consensus 22 G~-pYP~~~~~t~~~~ei~~~~~~~~~~~~~~~~~~V~vaGRI~~~R~~G-k~~F~~i~D~~g~iQi~~~~~~--~~~~~ 97 (143)
T d1e1oa1 22 GV-AFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG-KASFVTLQDVGGRIQLYVARDS--LPEGV 97 (143)
T ss_dssp SC-SSCCCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEETTT--SSTTH
T ss_pred CC-CCCCCCcCCccHHHHHHHHhcccchhhhccCceEEEEEEEEEEcccC-CeeEEEEEeCCceEEEEEcccc--chhhh
Confidence 55 999999999887653 23333321 23478999999999999999 9999999999999999999763 333 4
Q ss_pred HHHHHhcCCCCceEEEEEEEecCCCccCCCceeEEEEEeEEEEeecCCCC-C
Q 008808 150 MVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-P 200 (553)
Q Consensus 150 ~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P 200 (553)
+..+.+.|..||||+|+|.+.++. ||+++|.++++.+|++|++| |
T Consensus 98 ~~~~~k~ld~GDiIgv~G~~~~Tk------tGElsi~~~~~~lLsK~l~PLP 143 (143)
T d1e1oa1 98 YNDQFKKWDLGDIIGARGTLFKTQ------TGELSIHCTELRLLTKALRPLP 143 (143)
T ss_dssp HHHTGGGCCTTCEEEEEEEEEECT------TCCEEEEEEEEEEEECCSSCCC
T ss_pred HHHHHhcCCcccEEEeecccEECC------CCcEEEEeeEEEEeccccCCCC
Confidence 445678999999999999999764 68999999999999999998 7
|
| >d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Probab=99.82 E-value=3.2e-20 Score=158.00 Aligned_cols=98 Identities=28% Similarity=0.415 Sum_probs=88.4
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
+.|++|++.++|++|+|+|||+++|.+| |++|++|||+++.|||++..+ ..+++++++++.|+.||+|.|+|+|..+
T Consensus 5 h~~~el~~~~~G~~V~v~Gwv~~~R~~g-~i~Fi~LrD~sg~iQ~v~~~~--~~~~~~~~~~~~l~~es~v~V~G~v~~~ 81 (103)
T d1b8aa1 5 HYSSEITEELNGQKVKVAGWVWEVKDLG-GIKFLWIRDRDGIVQITAPKK--KVDPELFKLIPKLRSEDVVAVEGVVNFT 81 (103)
T ss_dssp CCGGGCCGGGTTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEETT--TSCHHHHHHGGGCCTTCEEEEEEEEEEC
T ss_pred cChhhCChhHCCCEEEEEEEEehhccCC-CcEEEEEEcCCEeeeEEEecc--ccchhhhhHHhhCCcceEEEEEEEEEEC
Confidence 5688899999999999999999999999 899999999999999999876 4678899999999999999999999887
Q ss_pred CCccCCCceeEEEEEeEEEEeecCC
Q 008808 173 DVEIKGATQQVEVQIKKLYCVSRAA 197 (553)
Q Consensus 173 ~~~~~~~t~~~Ei~v~~i~~ls~~~ 197 (553)
++ .++.+||++++++|||+|.
T Consensus 82 ~~----~~~~iEi~v~~i~ils~a~ 102 (103)
T d1b8aa1 82 PK----AKLGFEILPEKIVVLNRAE 102 (103)
T ss_dssp TT----STTSEEEEEEEEEEEECBC
T ss_pred CC----CCccEEEEeeEEEEEEecC
Confidence 63 2446999999999999874
|
| >d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=5.4e-19 Score=151.02 Aligned_cols=100 Identities=29% Similarity=0.382 Sum_probs=86.3
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
+.|++|+..++|++|+|+|||+++|.+| +++|++|||+++.+||++..+ ..++.+.+..|+.||+|.|+|+|...
T Consensus 4 h~cgeL~~~~~g~~V~v~GWv~~~R~~g-~i~Fi~LRD~~G~~Q~v~~~~----~~~~~~~~~~l~~Es~v~V~G~V~~r 78 (106)
T d1c0aa1 4 EYCGQLRLSHVGQQVTLCGWVNRRRDLG-SLIFIDMRDREGIVQVFFDPD----RADALKLASELRNEFCIQVTGTVRAR 78 (106)
T ss_dssp SCGGGCCGGGTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECGG----GHHHHHHHTTCCTTCEEEEEEEEEEC
T ss_pred eEcccCChHHCCCEEEEEEEEEEeeeCC-CcEEEEEEcCCeEEeEEeccc----chhHHHHHHhhCccceEEEEeEEecc
Confidence 5688999999999999999999999999 999999999999999999765 23566778899999999999999865
Q ss_pred CCc---cCCCceeEEEEEeEEEEeecCC
Q 008808 173 DVE---IKGATQQVEVQIKKLYCVSRAA 197 (553)
Q Consensus 173 ~~~---~~~~t~~~Ei~v~~i~~ls~~~ 197 (553)
+.. .+..++++||+++++.|||+|.
T Consensus 79 ~~~~~n~~~~tg~iEi~v~~i~vl~~ad 106 (106)
T d1c0aa1 79 DEKNINRDMATGEIEVLASSLTIINRAD 106 (106)
T ss_dssp CTTTCCTTSTTTTEEEEEEEEEEEECCC
T ss_pred CccccCCCCCCCcEEEEEeEEEEEeCCC
Confidence 432 2345678999999999999874
|
| >d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=99.78 E-value=4.9e-19 Score=150.56 Aligned_cols=99 Identities=26% Similarity=0.346 Sum_probs=85.6
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
+.|++|++.+.|++|+|+|||+++|.+| +++|++|||+++.|||+++.+. +.++.+..|+.||+|.|+|+|...
T Consensus 5 h~~geL~~~~~g~~V~l~GWV~~~R~~g-~i~Fi~LRD~~G~iQ~v~~~~~-----~~~~~~~~l~~Es~I~V~G~V~~r 78 (104)
T d1l0wa1 5 HYAGSLRETHVGEEVVLEGWVNRRRDLG-GLIFLDLRDREGLVQLVAHPAS-----PAYATAERVRPEWVVRAKGLVRLR 78 (104)
T ss_dssp SCGGGCCGGGTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECTTS-----TTHHHHTTCCTTCEEEEEEEEEEC
T ss_pred cccccCChHHCCCEEEEEEEEEehhcCC-CeEEEEEECCCCceEEecccch-----hHHHHHhhcCcccEEEEEEEEeeC
Confidence 5788999999999999999999999999 9999999999999999998653 235667899999999999999765
Q ss_pred CC-ccCCCceeEEEEEeEEEEeecCC
Q 008808 173 DV-EIKGATQQVEVQIKKLYCVSRAA 197 (553)
Q Consensus 173 ~~-~~~~~t~~~Ei~v~~i~~ls~~~ 197 (553)
+. ..+..||++||+++++.|||+|.
T Consensus 79 ~~~n~~~~tG~iEi~v~~i~iL~~ak 104 (104)
T d1l0wa1 79 PEPNPRLATGRVEVELSALEVLAEAK 104 (104)
T ss_dssp SSCCTTSTTTTEEEEEEEEEEEECCC
T ss_pred CccCCCCCCCCEEEEEeEEEEEEcCC
Confidence 43 23345788999999999999873
|
| >d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Probab=99.78 E-value=8.1e-19 Score=146.51 Aligned_cols=90 Identities=30% Similarity=0.368 Sum_probs=79.0
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
+.|++|. ++.|++|+|+|||+++|.+| |++|++|||+++.+||+++... .+..||+|.|+|+|..+
T Consensus 3 ~~I~dl~-~~~g~~V~v~GwV~~~R~~g-k~~Fi~LrD~sg~iQ~v~~~~~------------~~~~e~~v~v~G~v~~~ 68 (93)
T d1n9wa1 3 VLVRDLK-AHVGQEVELLGFLHWRRDLG-RIQFLLLRDRSGVVQVVTGGLK------------LPLPESALRVRGLVVEN 68 (93)
T ss_dssp CCGGGGG-GCTTSEEEEEEEEEEEEECS-SEEEEEEEETTEEEEEEEESCC------------CCCTTCEEEEEEEEEEC
T ss_pred EEhHHhh-hcCCCEEEEEEEEEeEEeCC-CcEEEEEEcCCccceEEecccc------------ccccceEEEEEEEEEEC
Confidence 3567774 58999999999999999999 9999999999999999998752 46789999999999887
Q ss_pred CCccCCCceeEEEEEeEEEEeecCCCC-C
Q 008808 173 DVEIKGATQQVEVQIKKLYCVSRAAKT-P 200 (553)
Q Consensus 173 ~~~~~~~t~~~Ei~v~~i~~ls~~~~~-P 200 (553)
+ ..+|++||+++++++||+|..| |
T Consensus 69 ~----~~~~~~Ei~v~~i~il~~a~~plP 93 (93)
T d1n9wa1 69 A----KAPGGLEVQAKEVEVLSPALEPTP 93 (93)
T ss_dssp T----TSTTSEEEEEEEEEEEECCCSCCC
T ss_pred C----CCCCCEEEEEeEEEEEecCCCCCC
Confidence 5 3467899999999999999876 6
|
| >d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS species: Thermus thermophilus [TaxId: 274]
Probab=99.36 E-value=1.7e-11 Score=119.40 Aligned_cols=93 Identities=17% Similarity=0.181 Sum_probs=61.3
Q ss_pred HHHHHHHHHhHhCCcEEEecceeecc---------CCCCCcc----ceeecCC------------CCceecc--cChhhH
Q 008808 253 QVGNIFRQFLLSENFVEIHTPKLIAG---------SSEGGSA----VFRLDYK------------GQSACLA--QSPQLH 305 (553)
Q Consensus 253 ~i~~~iR~fl~~~gF~EV~TP~l~~~---------~~egga~----~F~v~~~------------~~~~~L~--~SPql~ 305 (553)
.+++.|+++|.+.||-|++.|.+.+. +.+.-|+ .|.++.- ....-|| +|+-..
T Consensus 21 ~~~~~i~~if~~~GF~~~~gp~ies~~~NFDaLn~P~dHPAR~~~DTfYi~~~~~~~~~~~~~~~~~~~lLRTHTS~~q~ 100 (266)
T d1jjca_ 21 LMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQV 100 (266)
T ss_dssp HHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTSGGGGGSCCCBEECSSCCEECTTSCEECSCEEECSSSTHHHH
T ss_pred HHHHHHHHHHHHcCCeEeeCCccccchhhhhcccCCcccchhcccceEEEecccccccCcccccchhhhhhccCCcHHHH
Confidence 35677899999999999999987532 1122233 3444311 1223454 566444
Q ss_pred hhhcccCCCceeEEEeceecCCCCCCCCCcCcccceeEEec
Q 008808 306 KQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEME 346 (553)
Q Consensus 306 lk~li~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a 346 (553)
..|.--..--|++.+|+|||+|.+ |.+|.|+|.|+|.-+.
T Consensus 101 r~~~~~~~p~~~~~~g~VyRrd~i-D~tH~p~FhQ~eg~~v 140 (266)
T d1jjca_ 101 RYMVAHTPPFRIVVPGRVFRFEQT-DATHEAVFHQLEGLVV 140 (266)
T ss_dssp HHHHHSCSSEEEEEEEEEECCSCC-CSSCCSEEEEEEEEEE
T ss_pred HHHhccCCCceEEecccceecCCC-CCcccccceeeeeeec
Confidence 333211223589999999999996 8999999999998543
|
| >d12asa_ d.104.1.1 (A:) Asparagine synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Asparagine synthetase species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=4.7e-07 Score=87.41 Aligned_cols=262 Identities=18% Similarity=0.260 Sum_probs=166.6
Q ss_pred HHHHHHHHHhH-----hCCcEEEecceeeccCCCC-----Ccc---ceeecCC-CCceecccChhhHhhhccc-CCC---
Q 008808 253 QVGNIFRQFLL-----SENFVEIHTPKLIAGSSEG-----GSA---VFRLDYK-GQSACLAQSPQLHKQMSIC-GDF--- 314 (553)
Q Consensus 253 ~i~~~iR~fl~-----~~gF~EV~TP~l~~~~~eg-----ga~---~F~v~~~-~~~~~L~~SPql~lk~li~-~g~--- 314 (553)
+-|..|+++|. +.+.++|..|+++...++- |.+ .|.+..+ +..+-.-+|---||.+++. -||
T Consensus 7 ~aI~~iK~~F~~~L~~~LnL~rVsAPLfv~~~sGlNDnLnG~ErpV~F~ik~~~~~~~EiVhSLAKWKR~aL~~y~f~~g 86 (327)
T d12asa_ 7 RQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQHDFSAG 86 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHHHHHHhCcEEecCCeEEcCCCCcccCCCCeeeeeEEecCCCCCCeeEEEeehHHHHHHHHHhcCCCCC
Confidence 34555555553 5699999999987533221 222 4655443 6777788999999988874 244
Q ss_pred ceeEEEeceecC-CCCCCCCCcCcccceeEEeccccCHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcCCCccccCCC
Q 008808 315 GRVFETGPVFRA-EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKP 393 (553)
Q Consensus 315 ~rVfeIg~~FR~-E~~~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~ 393 (553)
+.+|.=....|. |+.-++.|.-=+-|-|||..+.. -+.-++.+.+.+..|+..+...- ..+...||..+ +.+
T Consensus 87 eGlytdMnAiR~DEd~ldn~HSiyVDQWDWEkvI~~-~dR~l~~Lk~tV~~Iy~~ik~te----~~v~~~y~~~~--~Lp 159 (327)
T d12asa_ 87 EGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGD-GERQFSTLKSTVEAIWAGIKATE----AAVSEEFGLAP--FLP 159 (327)
T ss_dssp CEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCT-TCCSHHHHHHHHHHHHHHHHHHH----HHHHHHSCCCC--CSC
T ss_pred ceeccCCccccCCcccCCCceeEEEcccchhhhcCc-cccCHHHHHHHHHHHHHHHHHHH----HHHHHhCCccc--CCC
Confidence 478998888886 55348899999999999998864 35566666677777766664321 12233455322 221
Q ss_pred CCcccCHHHHHHHHHHcCCCCCCCCCCCc-HHHHHHhHHHHHHhCCccEEEec--c------CCcCCCCCCcccCCCCcc
Q 008808 394 KTLRLTFEEGVQMLKDAGVEIDPLGDLNT-ESERKLGQLVLEKYGTEFYILHR--Y------PLAVRPFYTMPCHDNSLY 464 (553)
Q Consensus 394 ~~~~i~~~ea~~ll~~~g~~~~~~~dl~~-~~e~~l~~~v~~~~~~~~~ii~~--~------P~~~~pfy~~~~~~~~~~ 464 (553)
..|+|--+-+++... .+++. +-|..+. .+++. +||.. + |...|. |+...+
T Consensus 160 --~~I~FitsqeL~~~Y-------P~Lt~keRE~~i~----ke~gA--VFi~~IG~~L~~G~~Hd~RA------pDYDDW 218 (327)
T d12asa_ 160 --DQIHFVHSQELLSRY-------PDLDAKGRERAIA----KDLGA--VFLVGIGGKLSDGHRHDVRA------PDYDDW 218 (327)
T ss_dssp --SSCEEEEHHHHHHHS-------SSSCHHHHHHHHH----HHHSE--EEEECCSSCCSSSCCSSCCC------TTTBCC
T ss_pred --CceEEEehHHHHHHC-------CCCChHHHHHHHH----HHhCc--EEEEecCCcCCCCCcCCCCC------CCCCcc
Confidence 223332222333332 12332 3344443 33443 33332 2 222222 111123
Q ss_pred e---------eEEEEEe-C-----CEEEeeceeccCCHHHHHHHHHHcCCChhcHHHHHHHhhcC-CCCcceeeecHHHH
Q 008808 465 S---------NSFDVFI-R-----GEEIISGAQRIHIPEFLAERAQACGIDVKTISTYIDSFRYG-APPHGGFGVGLERV 528 (553)
Q Consensus 465 ~---------~~fdl~~-~-----G~Ei~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G-~pP~~G~GiGidRL 528 (553)
+ ..=|+++ + ..||.|-+.|.+. +.|+++++..|.+...--.|..++=.| +|-|-|.|||=.||
T Consensus 219 ~t~~~~~~~gLNGDIlvw~~vl~~a~ElSSMGIRVd~-~~L~~QL~~~~~~~r~~l~~Hk~ll~~~LP~TIGGGIGQSRl 297 (327)
T d12asa_ 219 STPSELGHAGLNGDILVWNPVLEDAFELSSMGIRVDA-DTLKHQLALTGDEDRLELEWHQALLRGEMPQTIGGGIGQSRL 297 (327)
T ss_dssp SSBCTTSSBCSEEEEEEEETTTTEEEEEEEEEEBCCH-HHHHHHHHHHTCTTGGGSHHHHHHHTTCSCCEEEEEEEHHHH
T ss_pred cCcccccccCccceEEEechhcCceeeeecceeEECH-HHHHHHHHHcCChhhhcCHHHHHHHcCCCCccccccccHHHH
Confidence 3 5667665 2 3899999999754 889999998887665555777777777 99999999999999
Q ss_pred HHHHcCCCCcccccc
Q 008808 529 VMLFCGLNNIRKTSL 543 (553)
Q Consensus 529 vm~l~g~~nIrdv~~ 543 (553)
+|+|++..+|.+|..
T Consensus 298 cM~lL~KaHIGEVQa 312 (327)
T d12asa_ 298 TMLLLQLPHIGQVQA 312 (327)
T ss_dssp HHHHHTCSCGGGTSC
T ss_pred HHHHHccCcccceee
Confidence 999999999999964
|
| >d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Lactococcus lactis [TaxId: 1358]
Probab=98.71 E-value=4.5e-07 Score=90.23 Aligned_cols=100 Identities=21% Similarity=0.260 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC------CCCC----ccceee-cCCCCceeccc--ChhhH---hhhcc
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS------SEGG----SAVFRL-DYKGQSACLAQ--SPQLH---KQMSI 310 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~------~egg----a~~F~v-~~~~~~~~L~~--SPql~---lk~li 310 (553)
-.+.+..|.+.+|+.|...||.||.||++.... ..++ -+.|.+ +.-|+.+.||- .+++. .+. -
T Consensus 14 ~~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~~~-~ 92 (318)
T d1z7ma1 14 QVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYDFTLPLVRLYSQI-K 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCEEEECCCSHHHHHHHHHTC-C
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHhhccCCCcccccccceeEeecCCccEEEeeccccchHHHHHHHh-c
Confidence 356677789999999999999999999984211 1111 124554 44678888873 24443 221 1
Q ss_pred cCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccc
Q 008808 311 CGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK 348 (553)
Q Consensus 311 ~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~ 348 (553)
.....|+|++|+|||+|.. ...+..||+|+.+|.-..
T Consensus 93 ~~~~~r~~Y~g~vfR~~~~-~~~r~rE~~Q~g~EiiG~ 129 (318)
T d1z7ma1 93 DSTSARYSYFGKIFRKEKR-HKGRSTENYQIGIELFGE 129 (318)
T ss_dssp SCCCEEEEEEEECCCCCC--------CCEEEEEEEESS
T ss_pred ccCCcccccccceeEEccc-cccccchhhhhheecccc
Confidence 2346799999999999975 344567999999997543
|
| >d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=98.60 E-value=3.7e-07 Score=91.15 Aligned_cols=101 Identities=21% Similarity=0.246 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccC----CCCCc------cceee-cCCCCceecccChhhHhhhcccC----
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEGGS------AVFRL-DYKGQSACLAQSPQLHKQMSICG---- 312 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~egga------~~F~v-~~~~~~~~L~~SPql~lk~li~~---- 312 (553)
.+.|..|.+.+++.|...||.+|.||++.... .-|.. ..|.+ +..+....|+..+..-..+.++.
T Consensus 16 ~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~d~~~~~~~lr~d~t~~~~r~~~~~~~~ 95 (325)
T d1qe0a2 16 SKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQ 95 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCSHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHHHHcCCeEeeCcccccHHHhccccCCchhHHHHHHhhhhccccccccccccccccHHHHHHhhccc
Confidence 46788999999999999999999999985321 01111 13332 22456677776554444433321
Q ss_pred -C---CceeEEEeceecCCCCCCCCCcCcccceeEEecccc
Q 008808 313 -D---FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK 349 (553)
Q Consensus 313 -g---~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~ 349 (553)
. .-|+|.+|+|||.+.....|+ -||+|+.+|.-...
T Consensus 96 ~~~~~p~R~~Y~g~VfR~~~~~~~~~-rE~~Q~G~EiiG~~ 135 (325)
T d1qe0a2 96 GNPNQPIKLYYNGPMFRYERKQKGRY-RQFNQFGVEAIGAE 135 (325)
T ss_dssp GCSSCSEEEEEEEEEECC-------C-CEEEEEEEEEESCC
T ss_pred cccccchhhheecceeeeccccCCcc-ceeeecceeecCCc
Confidence 1 239999999999997644444 69999999985543
|
| >d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Escherichia coli [TaxId: 562]
Probab=98.49 E-value=2.2e-06 Score=85.17 Aligned_cols=102 Identities=21% Similarity=0.276 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccCC----CCCc-----c-ceee-cCCCCceecccC--hhhHh---hhcc-
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS----EGGS-----A-VFRL-DYKGQSACLAQS--PQLHK---QMSI- 310 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~----egga-----~-~F~v-~~~~~~~~L~~S--Pql~l---k~li- 310 (553)
.+.|..|.+.+++.|...||.+|+||++....+ -|.. . .+.. +.-|+.+.||-. +++.. +...
T Consensus 16 ~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~~~~~~d~~g~~l~Lr~D~T~~iaR~~~~~~~~ 95 (322)
T d1kmma2 16 TAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLL 95 (322)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCTTSHHHHHTCEEEECTTSCEEEECSCSHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHCCCeEeECcccccHHHhhcccCcchhhhHHHHhhhhhcccccccccccccchhhHHHHhhhhh
Confidence 456788999999999999999999999853210 0111 1 2332 445788888743 23322 1111
Q ss_pred cCCCceeEEEeceecCCCCCCCCCcCcccceeEEeccccC
Q 008808 311 CGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKH 350 (553)
Q Consensus 311 ~~g~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~~ 350 (553)
....-|.|.+|+|||.+.....|. -||+|+.+|.-..++
T Consensus 96 ~~~p~r~~y~g~v~r~~~~~~gr~-re~~Q~g~EiiG~~~ 134 (322)
T d1kmma2 96 YNQEQRLWYIGPMFRHERPQKGRY-RQFHQLGCEVFGLQG 134 (322)
T ss_dssp TTCCEEEEEEEEEECCCCCBTTBC-SEEEEEEEEEESCCS
T ss_pred hhhhhhHhhcccccccCCCCCCcc-chhhhhhHHHhcccc
Confidence 123458999999999998644444 799999999754433
|
| >d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Thermus thermophilus [TaxId: 274]
Probab=98.32 E-value=1.9e-05 Score=78.32 Aligned_cols=101 Identities=21% Similarity=0.304 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----CCCC------ccceee-cCCCCceecccC--hhhHhhhcccC
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEGG------SAVFRL-DYKGQSACLAQS--PQLHKQMSICG 312 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~egg------a~~F~v-~~~~~~~~L~~S--Pql~lk~li~~ 312 (553)
.-.+.|..|.+.+++.|...||.||.||++.... .-|. ...|.+ +.-|+.+.||-. +++..- +...
T Consensus 14 ~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iar~-~~~~ 92 (324)
T d1h4vb2 14 KELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPEGTAAMVRA-YLEH 92 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCC------CCSCEEECTTSCEEEECCCSHHHHHHH-HHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeCCccccHHHhhcccCCchhHHHHHHhhhhccCCcccccccccccHHHHH-HHHh
Confidence 3456788899999999999999999999994321 1111 123433 335778888733 232221 1112
Q ss_pred C------CceeEEEeceecCCCCCCCCCcCcccceeEEeccc
Q 008808 313 D------FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK 348 (553)
Q Consensus 313 g------~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~ 348 (553)
. .-|.|.+|+|||.+... ....-||+|+++|.-..
T Consensus 93 ~~~~~~~p~r~~Y~g~VfR~~~~~-~gr~re~~Q~g~EiiG~ 133 (324)
T d1h4vb2 93 GMKVWPQPVRLWMAGPMFRAERPQ-KGRYRQFHQVNYEALGS 133 (324)
T ss_dssp TGGGSSSSEEEEEEEEEECCCCC-----CCEEEEEEEEEESC
T ss_pred hhhhhchhhhheeeCcccccCccc-CCCcceeccccccccCC
Confidence 1 24999999999999863 33458999999997544
|
| >d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.30 E-value=6e-06 Score=82.22 Aligned_cols=102 Identities=14% Similarity=0.118 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHhHhCCcEEEecceeeccC----CCCC---ccceee-cCCCCceeccc--ChhhHh---hhcccCC
Q 008808 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEGG---SAVFRL-DYKGQSACLAQ--SPQLHK---QMSICGD 313 (553)
Q Consensus 247 if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~egg---a~~F~v-~~~~~~~~L~~--SPql~l---k~li~~g 313 (553)
-...+..|.+.+++.|...||.+|.||++.... ..|. ...|.+ +.-|+.+.||- .|+... +..-...
T Consensus 17 ~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~f~D~~g~~l~LRpD~T~~iar~~~~~~~~~~ 96 (327)
T d1wu7a2 17 DMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTLIPEATPSTVRMVTSRKDLQR 96 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTTSCEEEECSCSHHHHHHHHTTCTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEeECCccchHhhccccCchhHHHHHhhhhcccchhhcccccccchhhhHhhhhhhccc
Confidence 456788899999999999999999999885321 1111 125654 44678888872 233322 1111122
Q ss_pred CceeEEEeceecCCCCCCCCCcCcccceeEEecccc
Q 008808 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK 349 (553)
Q Consensus 314 ~~rVfeIg~~FR~E~~~t~rHl~EFt~lE~e~a~~~ 349 (553)
.-|+|.+|+|||.+.. ...+.-||+|+.+|.-..+
T Consensus 97 p~k~~y~g~VfR~~~~-~~g~~re~~Q~G~EiiG~~ 131 (327)
T d1wu7a2 97 PLRWYSFPKVWRYEEP-QAGRYREHYQFNADIFGSD 131 (327)
T ss_dssp SEEEEECCEEECCCCS-CSSCCSEEEEEEEEEESCC
T ss_pred cceeeccCcceecccc-ccCCcchhhhhhhhhcCCc
Confidence 3599999999999975 3445679999999986543
|
| >d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=97.72 E-value=6.9e-05 Score=73.36 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccCC---CC-----Cccceeec--CCCCceecccChhhHhhhcccCC----
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----GSAVFRLD--YKGQSACLAQSPQLHKQMSICGD---- 313 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---eg-----ga~~F~v~--~~~~~~~L~~SPql~lk~li~~g---- 313 (553)
.+++.+|++++|+.+.+.||.||.||.|..... .| +...|.+. .-+..++|+-..+-.+-.+....
T Consensus 30 ~~l~~~L~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sG~~~~~~~~~~~~~~~~~~~~~~L~pt~e~~~~~~~~~~~~sy 109 (291)
T d1nyra4 30 ATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSY 109 (291)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEETTTEEEEECSSSHHHHHHHHHTSCCBG
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECccccchhHhhhhccccccccceEEEeeccccccccccccchhHHHHhhhcEeccc
Confidence 477889999999999999999999999975421 11 12234332 23567899988877665443322
Q ss_pred --C-ceeEEEeceecCCCCCC---CCCcCcccceeEEeccccCHHHHHHHHHHHHHH
Q 008808 314 --F-GRVFETGPVFRAEDSYT---HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (553)
Q Consensus 314 --~-~rVfeIg~~FR~E~~~t---~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~ 364 (553)
+ -|+|++++|||+|.+.+ ..=..+|+|.|.+. |. .-++..+.+++++..
T Consensus 110 ~dLPlr~~~~~~~fR~E~~~~~~Gl~Rvr~F~~~d~~~-f~-~~eq~~~e~~~~~~~ 164 (291)
T d1nyra4 110 RELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHI-FV-RPDQIKEEFKRVVNM 164 (291)
T ss_dssp GGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEE-EE-CGGGHHHHHHHHHHH
T ss_pred cccceEEeeccceeecCCCcccccccceeeeeeeehee-ec-CCcccHHHHHHHHHH
Confidence 2 49999999999997522 22346999999984 54 346666666666544
|
| >d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Escherichia coli [TaxId: 562]
Probab=97.68 E-value=5.3e-05 Score=74.22 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccCC---CC-----CccceeecCCCCceecccChhhHhhhcccCC------
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----GSAVFRLDYKGQSACLAQSPQLHKQMSICGD------ 313 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~---eg-----ga~~F~v~~~~~~~~L~~SPql~lk~li~~g------ 313 (553)
.+++.+|.+.+|+-+.+.||.||.||.|..... .| +.+.|.+.--+..++|+-..+-..=.+....
T Consensus 30 ~~l~~~L~~~i~e~~~~~G~~eV~~P~L~~~~l~~~sG~~~~~~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~~~~sy~~ 109 (291)
T d1qf6a4 30 WTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRD 109 (291)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEEETTEEEEECSSSHHHHHHHHTTSCEEGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEcccccchhHHhhhchhhhccchhccccccchhhcccccCcHHHHHHHHccccchhh
Confidence 467789999999999999999999999975421 11 1234555555778899888775443333221
Q ss_pred -CceeEEEeceecCCCC---CCCCCcCcccceeEEeccccCHHHHHHHHHHHHHH
Q 008808 314 -FGRVFETGPVFRAEDS---YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (553)
Q Consensus 314 -~~rVfeIg~~FR~E~~---~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~ 364 (553)
--|+||+++|||+|-+ .+..-..||+|-|.+. |.. -++.++.+++++..
T Consensus 110 LPl~~~q~~~~fR~E~~~~~~Gl~R~reF~~~d~h~-f~~-~e~~~~e~~~~~~~ 162 (291)
T d1qf6a4 110 LPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCT-EEQIRDEVNGCIRL 162 (291)
T ss_dssp CSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EEC-GGGHHHHHHHHHHH
T ss_pred cCeeEeecceeeecccccccccccccccceecccee-Eec-chhhHHHHHHHHHH
Confidence 2599999999999953 1233467999999996 553 35666666666543
|
| >d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
Probab=97.39 E-value=0.00042 Score=66.73 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccC----CCCCc-----cceeecCCC-----CceecccChhhHh-----hh
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEGGS-----AVFRLDYKG-----QSACLAQSPQLHK-----QM 308 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~----~egga-----~~F~v~~~~-----~~~~L~~SPql~l-----k~ 308 (553)
++++.+|.+.+|+-+.+.||.||.||.|.... +.+.. .-|.+.+-+ ..++|+...+-.. +.
T Consensus 35 ~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~ks~~~~~~~~~~~~~~~~~~~~~~~~~~~L~P~~~~~~~~i~~~~ 114 (268)
T d1nj8a3 35 FKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLW 114 (268)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEeehhhhhhHhhhccCCCccccccceeEEeccccccchhhhhcccCCCchhHHhhhhh
Confidence 46889999999999999999999999986421 22211 134443322 3588987765443 33
Q ss_pred cccC-C-CceeEEEeceecCCCCCCCC---CcCccccee-EEeccccCHHHHHHHHHHHH
Q 008808 309 SICG-D-FGRVFETGPVFRAEDSYTHR---HLCEFTGLD-VEMEIKKHYSEVMDIVDRLF 362 (553)
Q Consensus 309 li~~-g-~~rVfeIg~~FR~E~~~t~r---Hl~EFt~lE-~e~a~~~~~~~~m~~~e~ll 362 (553)
...- . .=|+||+|+|||+|.+ ..+ =.-||++.| .+. |..+-.+..+..+.++
T Consensus 115 ~~Syr~LP~r~~e~~~~fR~E~~-~~~GllR~reF~~~dd~~~-~~~~~~~~~~~~~~~~ 172 (268)
T d1nj8a3 115 VKVHTDLPIKIYQIVNTFRYETK-HTRPLIRLREIMTFKEAHT-AHSTKEEAENQVKEAI 172 (268)
T ss_dssp CCBTTSCCCCEEEEECCBCCCCS-CCBTTTBCSBCSCEEEEEE-EESSHHHHHHHHHHHH
T ss_pred ccchhhhheEEeecccccccccc-ccccceeEEEEeeechhce-eccccchhhHHHHHHH
Confidence 3222 1 2599999999999953 221 246898655 454 4335555555554444
|
| >d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.33 E-value=0.0005 Score=65.72 Aligned_cols=115 Identities=12% Similarity=0.065 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHhHhCCcEEEecceeeccCC-C--CC------ccceeecC-----CCCceecccChhh-----Hhhh
Q 008808 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-E--GG------SAVFRLDY-----KGQSACLAQSPQL-----HKQM 308 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~-e--gg------a~~F~v~~-----~~~~~~L~~SPql-----~lk~ 308 (553)
.+++.+|.+++++.+.+.||.||.||.|..... . |+ ...|.+.. .+.+++|+.+.+- |+..
T Consensus 40 ~~l~~~l~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sg~~~~~~~~~m~~~~~~~~~~~~~~~~L~pt~e~~~~~~~~~~ 119 (272)
T d1hc7a2 40 YAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKW 119 (272)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEeeccccchHHhhhcccchhhcccceeeeeccccccccchhhcccccccceeehhhce
Confidence 578999999999999999999999998864331 1 11 11233322 2356889877773 3333
Q ss_pred cccC-C-CceeEEEeceecCCCCCCC-CCcCcccceeEEeccccCHHHHHHHHHHHHH
Q 008808 309 SICG-D-FGRVFETGPVFRAEDSYTH-RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 309 li~~-g-~~rVfeIg~~FR~E~~~t~-rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
...- . --|+|++++|||+|.+... .=.-+|+|.+.++... +..+.....+.++.
T Consensus 120 ~~s~~~LPlr~~~~~~~fR~E~~~~g~~r~r~~~~~~~~~~~~-~~~~~~~~~~~~~~ 176 (272)
T d1hc7a2 120 IRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHA-TREEAEEEVRRMLS 176 (272)
T ss_dssp CCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEES-SHHHHHHHHHHHHH
T ss_pred eccccccceeeeecccccccccccccccceEEEEEEhhhhhhc-ccccchhHHHHHHH
Confidence 3221 1 2499999999999965211 1125788999987654 45565555554443
|
| >d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Seryl-tRNA synthetase (SerRS) species: Thermus thermophilus, strain hb27 [TaxId: 274]
Probab=97.09 E-value=0.0033 Score=61.52 Aligned_cols=117 Identities=10% Similarity=0.114 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHhHhCCcEEEecceeeccC-------CCCC-ccceeecCCCCceecccChhhHhhhccc------
Q 008808 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS-------SEGG-SAVFRLDYKGQSACLAQSPQLHKQMSIC------ 311 (553)
Q Consensus 246 ~if~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~-------~egg-a~~F~v~~~~~~~~L~~SPql~lk~li~------ 311 (553)
...++.-++++++.+++.++||.||.+|.|.... .+.. ...|.+ .+.++||.-..|..+=.+..
T Consensus 54 ~~a~Le~AL~~~~ld~~~~~gy~~v~~P~lv~~~~~~~~G~~p~f~~~~y~~--~~~~~~LipTsE~~l~~~~~~~i~~~ 131 (311)
T d1seta2 54 DLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAI--AETDLYLTGTAEVVLNALHSGEILPY 131 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBB--TTSSEEECSSTHHHHHHTTTTCEEEG
T ss_pred HHHHHHHHHHHHHHHhhhcccceEEeechhhccchhhhcccccccccccccc--cccceeecccccchhhhhhhhhhhhh
Confidence 4456778889999999999999999999996431 1111 123433 35678998555544322221
Q ss_pred CCC-ceeEEEeceecCCCCC------CCCCcCcccceeEEeccccCHHHHHHHHHHHHHH
Q 008808 312 GDF-GRVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (553)
Q Consensus 312 ~g~-~rVfeIg~~FR~E~~~------t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~~ 364 (553)
..+ -|++++++|||.|... +--...+|+.+|....-..+.++-.+..++|+..
T Consensus 132 ~~LPlr~~~~s~cfR~Eag~~g~~trGL~RvhQF~kvE~~~~~~~~~e~s~~~~~~~~~~ 191 (311)
T d1seta2 132 EALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLEN 191 (311)
T ss_dssp GGCSEEEEEEEEEECCCCSCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHH
T ss_pred hhccceEEeecccchhhhccccccchhhhhhcccchhhhheeeccccccchhHHHHHHHH
Confidence 112 3899999999999531 2335679999998654333566666666666653
|
| >d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.02 E-value=0.00043 Score=68.76 Aligned_cols=116 Identities=13% Similarity=0.097 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHh--HhCCcEEEecceeeccC---CCCCcccee-----------------------ec-----CCCC
Q 008808 248 FRIQSQVGNIFRQFL--LSENFVEIHTPKLIAGS---SEGGSAVFR-----------------------LD-----YKGQ 294 (553)
Q Consensus 248 f~~Rs~i~~~iR~fl--~~~gF~EV~TP~l~~~~---~egga~~F~-----------------------v~-----~~~~ 294 (553)
.++|..|.+.+|+.+ .+.|+.||.||+|.... ..|+-..|. ++ .-+.
T Consensus 39 ~~l~~~i~~~wr~~~v~~~~~~~ev~tp~i~~~~lw~~SGH~~~f~d~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (331)
T d1b76a2 39 VELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNAKARYWTPPRYFNMMFQDLRGPRGGRGL 118 (331)
T ss_dssp HHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEEHHHHHHTSHHHHCEEEECBSSSCBCCCCCEEEECCEEEECSSSCCGGG
T ss_pred HHHHHHHHHHHHHHHHhccCCeEEEeccccCChHHhccCccccccCCceeeecccccccCccchhhccccccccccccCC
Confidence 478999999999987 47899999999996531 111111111 11 1134
Q ss_pred ceecc--cChhhHhhh---cc-c-CC-CceeEEEeceecCCCCCCCC---CcCcccceeEEeccccCHHHHHHHHHHHHH
Q 008808 295 SACLA--QSPQLHKQM---SI-C-GD-FGRVFETGPVFRAEDSYTHR---HLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 295 ~~~L~--~SPql~lk~---li-~-~g-~~rVfeIg~~FR~E~~~t~r---Hl~EFt~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
..||+ .++..+... .. . .. -=|++|||+|||||-+ ... -.=||||.|.|. |.. -++..+.+...+.
T Consensus 119 ~~~lr~~t~~~~~~~~~~~~~~syk~LP~~~aqig~~fR~E~s-~~~gl~RvReFtq~D~~~-F~~-~~q~~~~~~~~~~ 195 (331)
T d1b76a2 119 LAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEIT-PRNFIFRVREFEQMEIEY-FVR-PGEDEYWHRYWVE 195 (331)
T ss_dssp EEEECSCTHHHHHTTHHHHHHHHTCCSSEEEEEEEEEECCCSS-CCTTTTSCSEEEEEEEEE-EEC-GGGHHHHHHHHHH
T ss_pred cccccCcchhhHHHHHHhHHhccccccchhhhhccceeccccc-ccccccccchhhhhhhhh-hcC-CcchhHHHHHHHH
Confidence 56776 444443322 11 1 12 2489999999999975 222 245999999996 543 3555555544444
Q ss_pred HHH
Q 008808 364 TIF 366 (553)
Q Consensus 364 ~i~ 366 (553)
.+.
T Consensus 196 ~~~ 198 (331)
T d1b76a2 196 ERL 198 (331)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]
Probab=96.99 E-value=0.00089 Score=64.04 Aligned_cols=109 Identities=20% Similarity=0.213 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEecceeeccC-C--CC------CccceeecC-----CCCceecccChhhHhhhcccC--
Q 008808 249 RIQSQVGNIFRQFLLSENFVEIHTPKLIAGS-S--EG------GSAVFRLDY-----KGQSACLAQSPQLHKQMSICG-- 312 (553)
Q Consensus 249 ~~Rs~i~~~iR~fl~~~gF~EV~TP~l~~~~-~--eg------ga~~F~v~~-----~~~~~~L~~SPql~lk~li~~-- 312 (553)
+++..|.+.+|+.+ ++||.||.||.|+... . .+ +.+.|.+.+ .+..++|+-..+-..=.++..
T Consensus 34 ~i~~~i~~~~~~~~-~~G~~ev~~P~l~~~~~l~~~sgh~~~~~~e~f~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~ 112 (265)
T d1nj1a3 34 MIRKNTLKILRRIL-DRDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWV 112 (265)
T ss_dssp HHHHHHHHHHHHHH-TTTCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH-HhcCceehhhhhhhhhhhhhcccccccccccceeeeccCccccceeEEeecccccceEEeeeeee
Confidence 66888999999876 5699999999876432 1 11 123565533 235688987765543322211
Q ss_pred ----CC-ceeEEEeceecCCCCCC--CCCcCcccceeEEeccccCHHHHHHHH
Q 008808 313 ----DF-GRVFETGPVFRAEDSYT--HRHLCEFTGLDVEMEIKKHYSEVMDIV 358 (553)
Q Consensus 313 ----g~-~rVfeIg~~FR~E~~~t--~rHl~EFt~lE~e~a~~~~~~~~m~~~ 358 (553)
.+ =|+||+|+|||+|...+ -.=.-|||+++--..+..+-.+.....
T Consensus 113 ~SyrdLPlr~~q~~~~fR~E~~~~~Gl~R~reF~~~~d~~~~~~~~~~~~~e~ 165 (265)
T d1nj1a3 113 RSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQV 165 (265)
T ss_dssp CBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHH
T ss_pred ccccccceEEEeeccceeeecccCcCCEEEEEEEEeccceeecCCHHHHHHHh
Confidence 22 49999999999994311 112569987654444444444444433
|
| >d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 70 KDa subunit (RPA70) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.11 E-value=0.0069 Score=50.36 Aligned_cols=96 Identities=11% Similarity=0.143 Sum_probs=65.8
Q ss_pred EEeccccCCCCCCEEEEEEEEeee------c---cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceE
Q 008808 93 TVVGALNGSLKDQEVLIRGRVHTT------R---PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIV 163 (553)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~------R---~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV 163 (553)
+.|.+|++.. ..++|.|||.++ | ..| ++.-++|.|.+|.|+|++-.+ ...+|...|..|++.
T Consensus 3 ~PI~~L~p~~--~~~~I~~RV~~k~~~r~f~~~~~~g-~v~~~~l~De~G~I~~t~~~~------~~~~f~~~l~~G~vy 73 (116)
T d1jmca1 3 VPIASLTPYQ--SKWTICARVTNKSQIRTWSNSRGEG-KLFSLELVDESGEIRATAFNE------QVDKFFPLIEVNKVY 73 (116)
T ss_dssp CCGGGCCTTC--CCCEEEEEEEEECCCEEEECSSCEE-EEEEEEEECSSCEEEEEEEHH------HHHHHGGGCCTTCEE
T ss_pred EeHHHcCCCC--CCEEEEEEEEEeccceEEECCCCCc-eEEEEEEEcCCCCEEEEEchh------hhhhhHhhcccCCEE
Confidence 3455665433 346788999653 2 224 778889999999999999854 334677889999999
Q ss_pred EEEE-EEecCCCccCCCceeEEEEEeEEEEeecCC
Q 008808 164 DVIG-VVSVPDVEIKGATQQVEVQIKKLYCVSRAA 197 (553)
Q Consensus 164 ~V~G-~v~~~~~~~~~~t~~~Ei~v~~i~~ls~~~ 197 (553)
.|.| .|.......+.....+||....-..+.+|.
T Consensus 74 ~i~~~~V~~~~~~y~~~~~~yei~f~~~T~I~~~~ 108 (116)
T d1jmca1 74 YFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCE 108 (116)
T ss_dssp EEECCEEEECCGGGCCCCCSEEEECCTTCEEEECC
T ss_pred EEcceEEEEccCcEeccCCcEEEEECCCcEEEECC
Confidence 9998 455443333333445999997766666663
|
| >d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Thermotoga maritima [TaxId: 2336]
Probab=95.82 E-value=0.0083 Score=57.39 Aligned_cols=97 Identities=20% Similarity=0.206 Sum_probs=58.8
Q ss_pred HhHhCCcEEEecceeeccCCCCCccceeecCCCCceecc--cChhhHhhhcc--cCCCceeEEEeceecCCCCCCCCCcC
Q 008808 261 FLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLA--QSPQLHKQMSI--CGDFGRVFETGPVFRAEDSYTHRHLC 336 (553)
Q Consensus 261 fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~--~SPql~lk~li--~~g~~rVfeIg~~FR~E~~~t~rHl~ 336 (553)
-..++||-||.||.+.......+. .| .+--|+.+.|| ..+++..-.+- ...--|+|.+|+|||.++. +.-
T Consensus 15 ~~~~~Gy~~i~tP~~E~~e~~~~~-~F-~D~~g~~l~LRpD~T~~iaR~~~~~~~~~p~k~~Y~g~VfR~~~~----~~r 88 (275)
T d1usya_ 15 KATKKGFSPFFVPALEKAEEPAGN-FF-LDRKGNLFSIREDFTKTVLNHRKRYSPDSQIKVWYADFVYRYSGS----DLV 88 (275)
T ss_dssp HHHHTTCEECCCCSEEECSSCCSS-CE-EETTSCEEEECCCHHHHHHHHHTTCTTCCCEEEECCEEEEEEETT----EEE
T ss_pred HHHHcCCceeecCccccccccccc-ee-EcCCCCEEEECCCCcHHHHHHHHHcCCCCCeeeeEEeeEEEeCCC----ccc
Confidence 335789999999999764433222 34 45567888887 33444431110 1112399999999998763 245
Q ss_pred cccceeEEeccccCH---HHHHHHHHHHHH
Q 008808 337 EFTGLDVEMEIKKHY---SEVMDIVDRLFV 363 (553)
Q Consensus 337 EFt~lE~e~a~~~~~---~~~m~~~e~ll~ 363 (553)
||+|+.+|.-...+. -|++.++-+.++
T Consensus 89 e~~Q~G~EiiG~~~~~aD~Evi~l~~~~l~ 118 (275)
T d1usya_ 89 AEYQLGLEKVPRNSLDDSLEVLEIIVESAS 118 (275)
T ss_dssp EEEEEEEEEESCCSHHHHHHHHHHHHHHHH
T ss_pred ceeecCceeechhhHHHHHHHHHHHHHHHH
Confidence 999999987433222 344444444443
|
| >d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Hypothetical protein YgiW family: Hypothetical protein YgiW domain: Hypothetical protein YgiW species: Escherichia coli [TaxId: 562]
Probab=94.63 E-value=0.067 Score=43.44 Aligned_cols=76 Identities=18% Similarity=0.219 Sum_probs=58.2
Q ss_pred ccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHH-hcCCCCceEEEEEEEecCCCcc
Q 008808 98 LNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGVVSVPDVEI 176 (553)
Q Consensus 98 l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~-~~l~~esiV~V~G~v~~~~~~~ 176 (553)
......+..|+|.|.|.+.-..- + |.++|+++.|+|-++.+. |. ..+.+++-|.|.|.|-+..
T Consensus 30 a~~~~Ddt~V~L~G~Iv~~l~~d-~---Y~F~D~TG~I~VeId~~~---------w~g~~v~p~~kV~i~GevDk~~--- 93 (106)
T d1nnxa_ 30 AKSLRDDTWVTLRGNIVERISDD-L---YVFKDASGTINVDIDHKR---------WNGVTVTPKDTVEIQGEVDKDW--- 93 (106)
T ss_dssp HTTSCSSEEEEEEEEEEEEEETT-E---EEEEETTEEEEEECCGGG---------STTCCCCTTSCEEEEEEEEEET---
T ss_pred HhhCcCCCeEEEEEEEEEEeCCc-e---EEEECCCCcEEEEEChhh---------cCCcccCCCCEEEEEEEEcCCC---
Confidence 33456788899999998876544 3 678999999999998652 33 3699999999999997542
Q ss_pred CCCceeEEEEEeEEEEe
Q 008808 177 KGATQQVEVQIKKLYCV 193 (553)
Q Consensus 177 ~~~t~~~Ei~v~~i~~l 193 (553)
...||-|..|++|
T Consensus 94 ----~~~eIdV~~I~~l 106 (106)
T d1nnxa_ 94 ----NSVEIDVKQIRKV 106 (106)
T ss_dssp ----TEEEEEEEEEEEC
T ss_pred ----CceEEEEEEEEEC
Confidence 1468888888765
|
| >d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 32 KDa subunit (RPA32) fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.24 E-value=0.26 Score=41.06 Aligned_cols=78 Identities=13% Similarity=0.140 Sum_probs=54.7
Q ss_pred CEEEEEEEEeeeccCCCceEEEEEEeCCe-EEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecCCCccCCCceeE
Q 008808 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVS-TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQV 183 (553)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~-~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~~ 183 (553)
..|+|-|+|.++...++++ -+.|-|+++ .|.|..-.+.... ......+..|+.|.|.|.++.-. ++.
T Consensus 29 ~~V~iVG~V~~i~~~~t~~-~y~idDgTG~~i~v~~w~~~~~~----~~~~~~i~~g~yVrV~G~lk~f~-------~~~ 96 (128)
T d2pi2a1 29 SQVTIVGIIRHAEKAPTNI-VYKIDDMTAAPMDVRQWVDTDDT----SSENTVVPPETYVKVAGHLRSFQ-------NKK 96 (128)
T ss_dssp SEEEEEEEEEEEEECSSEE-EEEEECSSSSCEEEEEECC-----------CCCCCTTCEEEEEEEEEEET-------TEE
T ss_pred EEEEEEEEEEEEEecCCEE-EEEEECCCCCcEEEEEECCCCCC----ccccccccCCCEEEEEEEEEeeC-------CeE
Confidence 4689999999999888554 569999998 6988876543211 11235799999999999997432 245
Q ss_pred EEEEeEEEEee
Q 008808 184 EVQIKKLYCVS 194 (553)
Q Consensus 184 Ei~v~~i~~ls 194 (553)
.|.+..|..+.
T Consensus 97 ~i~~~~i~~v~ 107 (128)
T d2pi2a1 97 SLVAFKIMPLE 107 (128)
T ss_dssp EEEEEEEEECS
T ss_pred EEEEEEEEEeC
Confidence 67777766553
|
| >d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Archaeal ssDNA-binding protein species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.03 E-value=0.21 Score=40.84 Aligned_cols=83 Identities=18% Similarity=0.176 Sum_probs=56.7
Q ss_pred EeccccCCCCCCEEEEEEEEeee---cc------CCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEE
Q 008808 94 VVGALNGSLKDQEVLIRGRVHTT---RP------VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 164 (553)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~---R~------~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~ 164 (553)
+|++|.+. ...|.|.|+|.++ |. .| +++.+.|.|++++|.+++=.. ++..|..|++|.
T Consensus 4 kI~dL~pg--~~~v~i~~~V~~~~~~r~~~~~~g~~-~v~~~~i~DeTG~i~~~~W~~----------~~~~l~~Gdvv~ 70 (115)
T d1o7ia_ 4 KVGNLKPN--MESVNVTVRVLEASEARQIQTKNGVR-TISEAIVGDETGRVKLTLWGK----------HAGSIKEGQVVK 70 (115)
T ss_dssp CGGGCCTT--CSSEEEEEEEEEECCCEEECCTTCCE-EEEEEEEEETTEEEEEEEEGG----------GTTCCCTTCEEE
T ss_pred cHHHCCCC--CCCEEEEEEEEECCCCceeecCCCCE-EEEEEEEEcCCCeEEEEEecc----------ccccCCCCCEEE
Confidence 45666542 2358899999876 32 24 788899999999999988643 134689999999
Q ss_pred EEEEEecCCCccCCCceeEEEEEeEEEEeec
Q 008808 165 VIGVVSVPDVEIKGATQQVEVQIKKLYCVSR 195 (553)
Q Consensus 165 V~G~v~~~~~~~~~~t~~~Ei~v~~i~~ls~ 195 (553)
|.|.-++.- .+.+||++.+-..+..
T Consensus 71 i~na~v~~~------~g~~el~~~~~s~i~~ 95 (115)
T d1o7ia_ 71 IENAWTTAF------KGQVQLNAGSKTKIAE 95 (115)
T ss_dssp EEEEEEEEE------TTEEEEEECTTCEEEE
T ss_pred EeeEEEEEE------CCeEEEEECCCeEEEE
Confidence 987544321 2468999955433333
|
| >d2pi2e1 b.40.4.3 (E:3-117) Replication protein A 14 KDa (RPA14) subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 14 KDa (RPA14) subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.37 E-value=0.35 Score=39.58 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=46.9
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEe-CCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEe
Q 008808 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRE-RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVS 170 (553)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd-~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~ 170 (553)
+..-+.| ..+.|+.|++-|+|.+++..|+. +.++. ++..|+|.+.... ....+.+|.|.|+|.
T Consensus 9 RVn~~~L-~~~~Gk~V~ivGkV~~v~~~g~~---~~~~s~D~~~V~v~l~~~~------------~~~~~~~vEViG~V~ 72 (115)
T d2pi2e1 9 RINAGML-AQFIDKPVCFVGRLEKIHPTGKM---FILSDGEGKNGTIELMEPL------------DEEISGIVEVVGRVT 72 (115)
T ss_dssp EECGGGG-GGSTTCEEEEEEEEEEECTTSSE---EEEECTTSCEEEEECSSCC------------SSCCCSEEEEEEEEC
T ss_pred eECHHHH-HhhCCCeEEEEEEEEEEcCCCCE---EEEEcCCCCEEEEEeCCCC------------CCccCCeEEEEEEEC
Confidence 3333444 36899999999999999999832 46776 4568888887642 245688999999995
|
| >d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: RecG "wedge" domain domain: RecG "wedge" domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.01 E-value=0.3 Score=42.88 Aligned_cols=70 Identities=16% Similarity=0.122 Sum_probs=48.3
Q ss_pred cccCCCCCCEEEEEEEEeeec---cCCCceEEEEEEeCCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEEEEEecC
Q 008808 97 ALNGSLKDQEVLIRGRVHTTR---PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (553)
Q Consensus 97 ~l~~~~~g~~V~v~GrV~~~R---~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (553)
.+++...|+.|+|.|+|.+.+ ..+.++.-+.+.|+++.|.++...... .. .. -....|..|.|.|.|...
T Consensus 53 ~i~~l~~g~~vti~g~V~~~~~~~~~~~~~~~~~v~D~~g~i~l~fFn~~~-~~----~~-~k~~~G~~v~v~Gkvk~~ 125 (180)
T d1gm5a2 53 KLNDLLPGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLVHVPLKWFNQDY-LQ----TY-LKQLTGKEVFVTGTVKSN 125 (180)
T ss_dssp CSSCCCSSCCCEEEECCCCCEEEECSSCEEEEEEECCSSCCEEEEECSCCT-TH----HH-HHTTCSSCEEEEEEECSC
T ss_pred cccccCcceeeeeeeEEEeeccccccccceeEEEEEeccceEEEEEeCcHH-HH----HH-HhhhcCceEEEEEEEeec
Confidence 344556789999999998653 233355567888999999999886532 11 11 123469999999998653
|
| >d3ulla_ b.40.4.3 (A:) ssDNA-binding protein {Human (Homo sapiens), mitochondria [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: ssDNA-binding protein species: Human (Homo sapiens), mitochondria [TaxId: 9606]
Probab=85.60 E-value=3.6 Score=32.73 Aligned_cols=39 Identities=5% Similarity=0.137 Sum_probs=28.2
Q ss_pred hcCCCCceEEEEEEEecCCC-ccCCCce-eEEEEEeEEEEe
Q 008808 155 RSLSNESIVDVIGVVSVPDV-EIKGATQ-QVEVQIKKLYCV 193 (553)
Q Consensus 155 ~~l~~esiV~V~G~v~~~~~-~~~~~t~-~~Ei~v~~i~~l 193 (553)
+.|+.||.|.|+|.+....- ...|.+. .+||.+.+|.+|
T Consensus 75 ~~l~KG~~V~V~Grl~~~~~~dkdG~~r~~~~v~a~~i~~L 115 (115)
T d3ulla_ 75 QYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFL 115 (115)
T ss_dssp HHCCTTCEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC
T ss_pred hhccCCCEEEEEEEEeeeeEECCCCCEEEEEEEEEEEEEeC
Confidence 45999999999999976542 2234333 399999998764
|
| >d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=84.00 E-value=0.27 Score=48.66 Aligned_cols=30 Identities=30% Similarity=0.504 Sum_probs=24.2
Q ss_pred eeEEEeceecCCCCCCCC----CcCcccceeEEeccc
Q 008808 316 RVFETGPVFRAEDSYTHR----HLCEFTGLDVEMEIK 348 (553)
Q Consensus 316 rVfeIg~~FR~E~~~t~r----Hl~EFt~lE~e~a~~ 348 (553)
.+.|||++||||- +.| -+-||||+|+|. |.
T Consensus 211 GiAQIGk~FRNEI--sPr~~l~R~REF~q~EiE~-Fv 244 (394)
T d1atia2 211 GIAQIGKAFRNEI--TPRNFIFRVREFEQMEIEY-FV 244 (394)
T ss_dssp EEEEEEEEEBCCS--SCCTGGGSCSEEEEEEEEE-EE
T ss_pred eeeeecccccccc--CcccCCcccccceeeeeEE-EE
Confidence 5899999999995 344 368999999997 44
|
| >d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain species: Thermus thermophilus [TaxId: 274]
Probab=82.46 E-value=1.4 Score=39.18 Aligned_cols=105 Identities=16% Similarity=0.116 Sum_probs=56.9
Q ss_pred HHHHHHHhHhCCcEEEecceeeccCC----CCCccceee-cCCC-CceecccChhhHhhhcc----c-CCC--ceeEEEe
Q 008808 255 GNIFRQFLLSENFVEIHTPKLIAGSS----EGGSAVFRL-DYKG-QSACLAQSPQLHKQMSI----C-GDF--GRVFETG 321 (553)
Q Consensus 255 ~~~iR~fl~~~gF~EV~TP~l~~~~~----egga~~F~v-~~~~-~~~~L~~SPql~lk~li----~-~g~--~rVfeIg 321 (553)
.+.+|++|...||.||-|-.+++... .......++ |-.. ..-+||+|-=--+=..+ . +.. -|+||||
T Consensus 21 ~~~ir~~L~~~Gf~Ev~tysf~s~~~~~~~~~~~~~i~l~NPis~e~~~lR~sLlpgLL~~~~~N~~r~~~~~~~lFEiG 100 (207)
T d1jjcb5 21 EQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVG 100 (207)
T ss_dssp HHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEESSCSSGGGSEECSCSHHHHHHHHHHHHHHSCCSEEEEEEEE
T ss_pred HHHHHHHHHHCCcchhcCCCcCCHHHHHhhcCCCCcEEEeCCcchhhhhhhhhcchHHHHHHHhCcccccccceeeEeee
Confidence 45689999999999999999975320 010112233 2222 33478877433222222 1 223 3789999
Q ss_pred ceecCCCC------CCCCCcCcccceeEEeccccCHHHHHHHHHHHHH
Q 008808 322 PVFRAEDS------YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (553)
Q Consensus 322 ~~FR~E~~------~t~rHl~EFt~lE~e~a~~~~~~~~m~~~e~ll~ 363 (553)
++|+.... ....+..+.+.-.- ..|+.++..+++.++.
T Consensus 101 ~vf~~~~~~~~~~~~~g~~~~~~~~~~~----~~df~~~Kg~v~~ll~ 144 (207)
T d1jjcb5 101 RVFREREETHLAGLLFGEGVGLPWAKER----LSGYFLLKGYLEALFA 144 (207)
T ss_dssp EEESSSEEEEEEEEEEESCBSCTTSSCC----BCHHHHHHHHHHHHHH
T ss_pred eeeeccccccchhhhhhccccccccccc----chhHHHHHHHHHHHHH
Confidence 99987542 11123333332211 1246676666666654
|
| >d1se8a_ b.40.4.3 (A:) ssDNA-binding protein {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: ssDNA-binding protein species: Deinococcus radiodurans [TaxId: 1299]
Probab=80.32 E-value=5 Score=36.06 Aligned_cols=84 Identities=18% Similarity=0.347 Sum_probs=53.5
Q ss_pred CEEEEEEEEee---ec--cCCCceEEEEEE------e-------CCeEEEEEeecCCCCcchHHHHHHhcCCCCceEEEE
Q 008808 105 QEVLIRGRVHT---TR--PVGNKLAFVVVR------E-------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVI 166 (553)
Q Consensus 105 ~~V~v~GrV~~---~R--~~G~kl~Fl~Lr------d-------~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~ 166 (553)
..|.|.|+|-+ +| ..|++++-+.|- + ....+.|++-.+ +.+.++.|+.||.|.|+
T Consensus 128 N~v~l~G~l~~dpe~r~t~~G~~~~~f~va~~~~~~~~~g~~~~~t~~~~v~~~g~-------~Ae~~~~l~KG~~V~V~ 200 (231)
T d1se8a_ 128 NEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRD-------LAENMKELRKGDPVMIM 200 (231)
T ss_dssp EEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETH-------HHHHHTTCCTTCEEEEE
T ss_pred eeEEEEEEeCCCcEEEECCCCCEEEEEEEEECCCeECCCCceeeeeEEEEeEecCc-------HHHHhhhCCCCCEEEEE
Confidence 57999999987 34 345556655552 1 123577776632 23445679999999999
Q ss_pred EEEecCC-CccCCCcee-EEEEEeEEEEeec
Q 008808 167 GVVSVPD-VEIKGATQQ-VEVQIKKLYCVSR 195 (553)
Q Consensus 167 G~v~~~~-~~~~~~t~~-~Ei~v~~i~~ls~ 195 (553)
|.+.... ....|.+.. ++|.+.+|.+|++
T Consensus 201 G~l~~~~~~~kdG~~r~~~~i~a~~v~~L~r 231 (231)
T d1se8a_ 201 GRLVNEGWTDKDGNKRNSTRVEATRVEALAR 231 (231)
T ss_dssp EEEEEEECC------CEEEEEEEEEEEECCC
T ss_pred EEeEeceEECCCCCEEEEEEEEEEEEEEccC
Confidence 9986443 112344433 9999999999874
|