Citrus Sinensis ID: 008864

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550
MVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK
cHHHHcHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEcccccccEEEEccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHccHHHHHHHccccccccccccccHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccEEEEEEEccccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccc
cHHHHHHHHHcccccHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccHcHccccccHHHHHHHccHHHHccHHHHHHHHHHHHHHcHEEEEEEcccccccccccccHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccEEEEccHHHHHHHHHHHcccccccccccccccccccccEEEEEEEEEccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccc
MVAQLEHQFRLGRLSIQGLWFycqpmlgsMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVyegviddpygefFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMrecghsaqvptsenskllsfgsnhhYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRStaaaadpchedltcsVERSSLLKRMATLKGVeiktssdsvdleqpvsitglETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLtfevlepnwhVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISssidlpkleepsdgfsgsekfkRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQslgpilssssqaepYLTHLAQLVLGVGFDK
MVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTaaaadpchedltcsverssLLKRMATLKGveiktssdsvdleqpvSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPsdgfsgsekfkrlkLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK
MVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK
******HQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQV******KLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEI*******DLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSID************************LSQVQKVMIRDATVTESILKFEREFNNE***************PYLTHLAQLVLGVG***
MVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSL*****TQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELM**L**ITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGV************QPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSI*********************************IRDATVTESILKFEREFNNELQSLGPILS**********HLAQLVLGVGFD*
MVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK
MVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVE****SDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGS******KLRSL***QKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGF**
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MVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query550 2.2.26 [Sep-21-2011]
Q921G8905 Gamma-tubulin complex com yes no 0.829 0.503 0.410 1e-103
Q9BSJ2902 Gamma-tubulin complex com yes no 0.829 0.505 0.408 1e-102
Q5R5J6902 Gamma-tubulin complex com yes no 0.829 0.505 0.406 1e-102
Q9XYP7852 Gamma-tubulin complex com yes no 0.870 0.562 0.337 2e-85
Q9Y705784 Spindle pole body compone yes no 0.778 0.545 0.342 9e-59
Q95ZG3 1335 Spindle pole body compone yes no 0.487 0.200 0.324 4e-45
O73787906 Gamma-tubulin complex com N/A no 0.62 0.376 0.300 1e-42
Q96CW5907 Gamma-tubulin complex com no no 0.627 0.380 0.291 4e-42
P58854905 Gamma-tubulin complex com no no 0.627 0.381 0.291 5e-41
Q9XYP8917 Gamma-tubulin complex com no no 0.616 0.369 0.263 5e-30
>sp|Q921G8|GCP2_MOUSE Gamma-tubulin complex component 2 OS=Mus musculus GN=Tubgcp2 PE=2 SV=2 Back     alignment and function desciption
 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/470 (41%), Positives = 295/470 (62%), Gaps = 14/470 (2%)

Query: 1   MVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKA 60
           +V QLE   R G LS+Q LWFY QP + ++  ++++          G + L+LL  ++  
Sbjct: 306 LVTQLEQLHRQGLLSLQKLWFYIQPAMRTIDILASLATSVDKGECVGGSTLSLLHDRSFN 365

Query: 61  MAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYD 120
             GD+  + L   +T+ AS  Y  ILE+W+Y G+I DPY EF + E+  L KE + +DY+
Sbjct: 366 YTGDSQAQELCLYLTKAASAPYFEILEKWIYRGIIHDPYSEFMV-EEHELRKEKIQEDYN 424

Query: 121 AKYWRQRYS-LKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNH 179
            KYW QRY+ L   IPSFL  +AGKIL+TGKYLNV+RECGH    P ++  +++      
Sbjct: 425 DKYWDQRYTVLPQQIPSFLQKVAGKILSTGKYLNVVRECGHDVTCPVAK--EIIYTLKER 482

Query: 180 HYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQ 239
            Y+E ++ A+ +AS  LL+ + E  +L+  LRSIKRY L+DQGDF VHFMD+  EEL K 
Sbjct: 483 AYVEQIEKAFNYASKVLLDFLMEEKELVAHLRSIKRYFLMDQGDFFVHFMDLTEEELRKP 542

Query: 240 LDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIK-----TS 294
           +++I + +L++LL++ALR + A  DP  +DL   +    L+ ++  +  +E K     T 
Sbjct: 543 VEDIILTRLEALLELALRMSTANTDPFKDDLKIELMPHDLITQLLRVLAIETKQEKAMTH 602

Query: 295 SDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGA 354
           +D  +L    +++GLE FS  Y V+WPLS++I+RKALT+YQM+FR +F+CKHVERQLC  
Sbjct: 603 ADPTEL----TLSGLEAFSFDYMVKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSV 658

Query: 355 WQVHQGARAFN-ASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKS 413
           W  ++ A+     S    + +  L + ML F+ ++ +Y+ FEV+EP WH++   L++A +
Sbjct: 659 WISNKTAKQHALHSAKWFAGAFTLRQRMLNFVQNIQYYMMFEVMEPTWHILEKNLKSASN 718

Query: 414 IDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISS 463
           ID+V+ HH  FLD CL++C+L  P+LLK   +L S+C+ +    Q    S
Sbjct: 719 IDDVLGHHTSFLDNCLKDCMLTNPELLKVFSKLMSVCVMFTNCMQKFTQS 768
Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome.
Mus musculus (taxid: 10090)
>sp|Q9BSJ2|GCP2_HUMAN Gamma-tubulin complex component 2 OS=Homo sapiens GN=TUBGCP2 PE=1 SV=2 Back     alignment and function description
>sp|Q5R5J6|GCP2_PONAB Gamma-tubulin complex component 2 OS=Pongo abelii GN=TUBGCP2 PE=2 SV=1 Back     alignment and function description
>sp|Q9XYP7|GCP2_DROME Gamma-tubulin complex component 2 homolog OS=Drosophila melanogaster GN=Grip84 PE=1 SV=2 Back     alignment and function description
>sp|Q9Y705|ALP4_SCHPO Spindle pole body component alp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp4 PE=1 SV=1 Back     alignment and function description
>sp|Q95ZG3|SPC97_DICDI Spindle pole body component 97 OS=Dictyostelium discoideum GN=spc97 PE=2 SV=2 Back     alignment and function description
>sp|O73787|GCP3_XENLA Gamma-tubulin complex component 3 homolog OS=Xenopus laevis GN=tubgcp3 PE=1 SV=1 Back     alignment and function description
>sp|Q96CW5|GCP3_HUMAN Gamma-tubulin complex component 3 OS=Homo sapiens GN=TUBGCP3 PE=1 SV=2 Back     alignment and function description
>sp|P58854|GCP3_MOUSE Gamma-tubulin complex component 3 OS=Mus musculus GN=Tubgcp3 PE=2 SV=2 Back     alignment and function description
>sp|Q9XYP8|GCP3_DROME Gamma-tubulin complex component 3 homolog OS=Drosophila melanogaster GN=l(1)dd4 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query550
296087642 702 unnamed protein product [Vitis vinifera] 0.994 0.779 0.835 0.0
224112407 711 tubulin gamma complex-associated protein 0.978 0.756 0.799 0.0
449461078 707 PREDICTED: spindle pole body component 9 0.990 0.770 0.794 0.0
359488832 681 PREDICTED: gamma-tubulin complex compone 0.956 0.772 0.819 0.0
255578011 713 gamma-tubulin complex component, putativ 0.992 0.765 0.756 0.0
356560679 664 PREDICTED: gamma-tubulin complex compone 0.990 0.820 0.788 0.0
356503087 827 PREDICTED: gamma-tubulin complex compone 0.983 0.654 0.788 0.0
30686344 679 Spc97 / Spc98 family of spindle pole bod 0.943 0.764 0.754 0.0
18418288 678 Spc97 / Spc98 family of spindle pole bod 0.943 0.765 0.754 0.0
297807763 678 hypothetical protein ARALYDRAFT_488606 [ 0.943 0.765 0.750 0.0
>gi|296087642|emb|CBI34898.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  904 bits (2337), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/547 (83%), Positives = 500/547 (91%)

Query: 1   MVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKA 60
           MVAQLEHQFRLGRLSIQGLWFYCQPM+GSM A+S VIHKASANNF GSAVLNLLQSQAKA
Sbjct: 153 MVAQLEHQFRLGRLSIQGLWFYCQPMMGSMLALSTVIHKASANNFMGSAVLNLLQSQAKA 212

Query: 61  MAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYD 120
           MAGDN VRSLLEKMTQCAS+AYLGILERWVYEGVIDDPYGEFFIAE+KSL KESLTQDYD
Sbjct: 213 MAGDNAVRSLLEKMTQCASSAYLGILERWVYEGVIDDPYGEFFIAENKSLQKESLTQDYD 272

Query: 121 AKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHH 180
           AKYW QRYSLKDGIPSFLAN AG ILTTGKYLNVMRECGH+ QVP SE+SK +SFGSNHH
Sbjct: 273 AKYWGQRYSLKDGIPSFLANAAGTILTTGKYLNVMRECGHNVQVPASEDSKFISFGSNHH 332

Query: 181 YLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQL 240
           YLEC+K AYEF+S ELLNLIKE+YDL+GKLRSIK YLLLDQGDFLVHFMDIAR+EL K+L
Sbjct: 333 YLECIKAAYEFSSTELLNLIKEKYDLLGKLRSIKHYLLLDQGDFLVHFMDIARDELAKRL 392

Query: 241 DEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDL 300
           D+I+VEKLQSLLD+ALR+TAAAADPCHEDLTC VERSSLLKR+ TLK +EI++ +DS DL
Sbjct: 393 DDISVEKLQSLLDLALRTTAAAADPCHEDLTCCVERSSLLKRLGTLKALEIRSLADSNDL 452

Query: 301 EQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQG 360
           ++PVSI+GLETFSLSYKVQWPLSIVISRKALTKYQ++FR LFHCKHV RQLCGAWQ+HQG
Sbjct: 453 KEPVSISGLETFSLSYKVQWPLSIVISRKALTKYQLIFRFLFHCKHVNRQLCGAWQLHQG 512

Query: 361 ARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQH 420
            RA N  GTAI RSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQ 
Sbjct: 513 VRAINMRGTAIPRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQF 572

Query: 421 HDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGS 480
           HDFFLDKCLRECLL LP+LLKKVERLKSLCLQYA+ATQ LISSS+D+PK E PS G  G 
Sbjct: 573 HDFFLDKCLRECLLLLPELLKKVERLKSLCLQYASATQRLISSSVDIPKSEVPSKGSLGL 632

Query: 481 EKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLA 540
           EK K+ K R  S+V K+ I ++TVT+SILKFE+EFN EL SLGPILS+S+QAEP+LTHLA
Sbjct: 633 EKSKQGKSRIPSRVLKLAITNSTVTDSILKFEKEFNAELHSLGPILSNSAQAEPHLTHLA 692

Query: 541 QLVLGVG 547
           Q +LGVG
Sbjct: 693 QWILGVG 699

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224112407|ref|XP_002316177.1| tubulin gamma complex-associated protein [Populus trichocarpa] gi|222865217|gb|EEF02348.1| tubulin gamma complex-associated protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449461078|ref|XP_004148270.1| PREDICTED: spindle pole body component 97-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359488832|ref|XP_002273947.2| PREDICTED: gamma-tubulin complex component 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255578011|ref|XP_002529877.1| gamma-tubulin complex component, putative [Ricinus communis] gi|223530653|gb|EEF32527.1| gamma-tubulin complex component, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356560679|ref|XP_003548617.1| PREDICTED: gamma-tubulin complex component 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356503087|ref|XP_003520343.1| PREDICTED: gamma-tubulin complex component 2-like [Glycine max] Back     alignment and taxonomy information
>gi|30686344|ref|NP_850838.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] gi|332005039|gb|AED92422.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18418288|ref|NP_568346.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] gi|13430652|gb|AAK25948.1|AF360238_1 putative spindle pole body protein [Arabidopsis thaliana] gi|14532826|gb|AAK64095.1| putative spindle pole body protein [Arabidopsis thaliana] gi|332005040|gb|AED92423.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297807763|ref|XP_002871765.1| hypothetical protein ARALYDRAFT_488606 [Arabidopsis lyrata subsp. lyrata] gi|297317602|gb|EFH48024.1| hypothetical protein ARALYDRAFT_488606 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query550
TAIR|locus:2178930679 AT5G17410 [Arabidopsis thalian 0.849 0.687 0.788 2.8e-222
ZFIN|ZDB-GENE-031118-150882 tubgcp2 "tubulin, gamma comple 0.94 0.586 0.395 2.3e-101
UNIPROTKB|J9P5U2704 TUBGCP2 "Uncharacterized prote 0.963 0.752 0.383 3.8e-101
UNIPROTKB|F1SCV1906 TUBGCP2 "Uncharacterized prote 0.963 0.584 0.384 4.9e-101
UNIPROTKB|Q9BSJ2902 TUBGCP2 "Gamma-tubulin complex 0.956 0.583 0.390 2.1e-100
UNIPROTKB|Q5ZKY5895 TUBGCP2 "Uncharacterized prote 0.941 0.578 0.384 3.4e-100
RGD|1309597905 Tubgcp2 "tubulin, gamma comple 0.827 0.502 0.414 5.6e-100
MGI|MGI:1921487905 Tubgcp2 "tubulin, gamma comple 0.827 0.502 0.409 9.1e-100
UNIPROTKB|E1BZL5906 TUBGCP2 "Uncharacterized prote 0.943 0.572 0.382 3.1e-99
UNIPROTKB|E1C2Y1906 TUBGCP2 "Uncharacterized prote 0.943 0.572 0.382 3.1e-99
TAIR|locus:2178930 AT5G17410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1951 (691.8 bits), Expect = 2.8e-222, Sum P(2) = 2.8e-222
 Identities = 373/473 (78%), Positives = 420/473 (88%)

Query:     1 MVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKA 60
             MVAQLEHQFRLGRLSIQGLWFYCQPM+GSM+A++AVI +AS   F GS VLNLLQSQAKA
Sbjct:   158 MVAQLEHQFRLGRLSIQGLWFYCQPMMGSMRALAAVIQQASTKQFVGSGVLNLLQSQAKA 217

Query:    61 MAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYD 120
             MAGDN+VRSLLEKMT+CASNAYL ILERWVYEG+IDDPYGEFFIAE++SL KESL+QD  
Sbjct:   218 MAGDNSVRSLLEKMTECASNAYLSILERWVYEGIIDDPYGEFFIAENRSLKKESLSQDST 277

Query:   121 AKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHH 180
             AKYW QRYSLKD IP FLANIA  ILTTGKYLNVMRECGH+ QVP SE SKL  FGSNHH
Sbjct:   278 AKYWSQRYSLKDTIPGFLANIAATILTTGKYLNVMRECGHNVQVPISERSKLTIFGSNHH 337

Query:   181 YLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQL 240
             YLEC+K A+EFAS EL+NLIK++YDL+G+LRSIK YLLLDQGDFLVHFMDIAREEL K++
Sbjct:   338 YLECIKAAHEFASIELVNLIKDKYDLVGRLRSIKHYLLLDQGDFLVHFMDIAREELNKKV 397

Query:   241 DEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDL 300
              EI+VEKLQSLLD+ALR+TAAAADP HEDLTC V+R+SLL    T  G+   T S+S+  
Sbjct:   398 HEISVEKLQSLLDLALRTTAAAADPRHEDLTCCVDRASLL----TTLGMHKDTDSNSI-- 451

Query:   301 EQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQG 360
             E P+SITGLETFSLSYKVQWPLSIVIS+KAL+KYQ++FR LFHCKHVERQLCGAWQ+HQG
Sbjct:   452 EDPMSITGLETFSLSYKVQWPLSIVISKKALSKYQLIFRFLFHCKHVERQLCGAWQIHQG 511

Query:   361 ARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQH 420
              R+ N+ GTAI RSSLLCRSMLKFI+SLLHYLTFEVLEPNWHVMH+RLQ+ +S+DEVIQH
Sbjct:   512 IRSMNSKGTAILRSSLLCRSMLKFISSLLHYLTFEVLEPNWHVMHDRLQSTRSVDEVIQH 571

Query:   421 HDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEP 473
             HDFFLDKCLR CLL LPD+LKK+E+LKS+CLQYAAATQWLISSSID+     P
Sbjct:   572 HDFFLDKCLRGCLLLLPDVLKKMEKLKSVCLQYAAATQWLISSSIDINSQSHP 624
GO:0000226 "microtubule cytoskeleton organization" evidence=IEA
GO:0000922 "spindle pole" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0005815 "microtubule organizing center" evidence=IEA
ZFIN|ZDB-GENE-031118-150 tubgcp2 "tubulin, gamma complex associated protein 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|J9P5U2 TUBGCP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SCV1 TUBGCP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BSJ2 TUBGCP2 "Gamma-tubulin complex component 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZKY5 TUBGCP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1309597 Tubgcp2 "tubulin, gamma complex associated protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1921487 Tubgcp2 "tubulin, gamma complex associated protein 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BZL5 TUBGCP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C2Y1 TUBGCP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020711001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (691 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00025404001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (841 aa)
    ••••0.556

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query550
pfam04130528 pfam04130, Spc97_Spc98, Spc97 / Spc98 family 1e-115
>gnl|CDD|217915 pfam04130, Spc97_Spc98, Spc97 / Spc98 family Back     alignment and domain information 
 Score =  352 bits (905), Expect = e-115
 Identities = 152/451 (33%), Positives = 231/451 (51%), Gaps = 29/451 (6%)

Query: 1   MVAQLEHQFR-LGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAK 59
           +VAQLE +    G L++  L    QP +  ++ ++ ++ +  + +  G  +L+ L  +  
Sbjct: 89  LVAQLESELLSNGTLTLLQLLAELQPAILLLRLLAEIVEEILSKSLKGGQLLSSLYERIA 148

Query: 60  AMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDY 119
           +  GD  +R LL ++   AS  YL +L RW+  G +DDPYGEFFI E++S   E +  D 
Sbjct: 149 SQTGDPDLRELLLRLLNAASQPYLQMLSRWLLHGELDDPYGEFFIKENES---EEVLSDD 205

Query: 120 DAKYWRQRYSL-KDGIPSFL-ANIAGKILTTGKYLNVMRECGHSAQVP------------ 165
             +YW +RY+L +D +PSFL   +A KIL  GK LN +REC  S  +             
Sbjct: 206 SDEYWEERYTLREDMLPSFLPKELARKILEIGKSLNFLRECCKSHPLAKDQSLALSLREA 265

Query: 166 TSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFL 225
                KL S          +  AY  AS  LL+L+ E YDL+G L+++K Y LL +GDF+
Sbjct: 266 LVSLLKLFSSLDTSALELLIDSAYLEASKSLLDLLLEEYDLLGHLQALKDYFLLGRGDFI 325

Query: 226 VHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMAT 285
             F++   +EL K  + ++   LQSLL  ALRS+++  DP   DL     + S       
Sbjct: 326 SSFLESLFDELDKPANSLSDHALQSLLQEALRSSSSDDDPASSDLDELETKKSDSSETLN 385

Query: 286 LKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCK 345
              V     S          ++GL+  +L YKV WPLS++++ +AL KYQ +FR L   K
Sbjct: 386 RLDVSSLELSS--------GLSGLDALTLDYKVPWPLSLILTPEALKKYQRIFRFLLRLK 437

Query: 346 HVERQLCGAWQVHQGARAFN---ASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWH 402
             E  L   W+     R       +   + +  LL   ML F+NSL +Y+  +V+E NW 
Sbjct: 438 RAEYLLNKLWKELNKRRRLGSTRRNEPLLRKIWLLRFQMLHFVNSLQYYIQVDVIESNWQ 497

Query: 403 VMHNRLQTAKSIDEVIQHHDFFLDKCLRECL 433
            +  +LQ AK +DE+I  H+ +LD  L  C 
Sbjct: 498 KLQEQLQKAKDLDELIAAHEDYLDSILSGCF 528

The spindle pole body (SPB) functions as the microtubule-organising centre in yeast. Members of this family are spindle pole body (SBP) components such as Spc97 and Spc98 that form a complex with gamma-tubulin. This family of proteins includes the grip motif 1 and grip moti 2. Length = 528

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 550
KOG2001734 consensus Gamma-tubulin complex, DGRIP84/SPC97 com 100.0
KOG2065679 consensus Gamma-tubulin ring complex protein [Cyto 100.0
PF04130542 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR00 100.0
KOG2000879 consensus Gamma-tubulin complex, DGRIP91/SPC98 com 100.0
KOG43441121 consensus Uncharacterized conserved protein [Funct 99.95
>KOG2001 consensus Gamma-tubulin complex, DGRIP84/SPC97 component [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=5.6e-87  Score=678.31  Aligned_cols=515  Identities=45%  Similarity=0.750  Sum_probs=445.3

Q ss_pred             ChhccchhhhcCCCcHHHHHHHhhchHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 008864            1 MVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASN   80 (550)
Q Consensus         1 ~i~~le~~~~~~~lsL~~L~~~l~p~~~~l~~L~~i~~~~~~~~~~g~~lL~~L~~~~~~~~g~~~~~~~l~~ll~~~~~   80 (550)
                      +|+|+|+|++.+.+||++||++++|+...++.++..++.+..+.++||.+|+.|++++..+.||+..+.++.++++.+++
T Consensus       193 li~qlE~e~R~~~lslq~L~~y~qP~m~~m~~l~~~~~~~~~~~~~gg~vls~l~~~~~~~~Gd~~a~~ll~~l~r~as~  272 (734)
T KOG2001|consen  193 LISQLEQELRTNRLSLQDLWFYMQPMMRSMRRLAVAATTTVKKVCKGGAVLSLLQSSIKENLGDRSARMLLKKLLRNASQ  272 (734)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHhhhHHHHHHHHHHHhhhhccccCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence            58999999999999999999999999999999999998888889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcceecCCCCcceEeeCCcccccccccccchhhhcccccc-ccCCCcchHHHHHHHHHhHHHHHHHHHhc
Q 008864           81 AYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSL-KDGIPSFLANIAGKILTTGKYLNVMRECG  159 (550)
Q Consensus        81 p~~~~l~~Wi~~G~l~D~~~EFFI~~~~~~~~~~~~~~~~~~~W~~~y~l-~~~vP~fl~~~a~~Il~~GK~l~~Lr~~~  159 (550)
                      ||++|+++|+..|.++|||+||||.++ ..+++.+++|++++||+++|+| +|.+|+|+...|+|||.||||+|++|+|+
T Consensus       273 ~Y~~mLe~Wi~~Gii~Dpy~EFmi~d~-~~~k~~l~ed~~d~YW~~RY~ir~dqiP~fL~~~adkIL~tGKYLNVvReC~  351 (734)
T KOG2001|consen  273 PYCTMLEEWIYQGIINDPYQEFMIYDN-LITKEDLPEDYTDKYWDQRYTIRKDQIPGFLLSEADKILRTGKYLNVVRECG  351 (734)
T ss_pred             hHHHHHHHHHhcccccCchHhHhhhhc-chhhhcCchhhhHHHHHHhheechhhcchHHHHHHHHHHHhhhHHHHHHHhC
Confidence            999999999999999999999999999 6777778889999999999999 89999999999999999999999999999


Q ss_pred             CCCCCCCccccccc-cCCCchhHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhc
Q 008864          160 HSAQVPTSENSKLL-SFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMK  238 (550)
Q Consensus       160 ~~~~~p~~e~~~l~-~f~~~~~~~~~I~~~~~~~s~~l~~ll~~~~~L~~hL~~l~~~fLL~~Gdf~~~f~~~~~~~l~~  238 (550)
                      +.++.|...+.... ....+..+.+.|.++|..|+..++++++++++|..||+.+|+||||..|||+..|++.+.++|.|
T Consensus       352 ~~v~~p~~~n~~~~~~~~~e~~~~e~I~~ay~~A~~~lL~ll~~e~dL~~hLrslK~YfLldQgdF~~~Fld~~~eEL~K  431 (734)
T KOG2001|consen  352 KIVTIPQSSNEINDPADLMESNHEEYIKKAYEFANEILLKLLFEEYDLVGHLRSLKHYFLLDQGDFFVTFLDKAEEELTK  431 (734)
T ss_pred             ccCCCCcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhc
Confidence            99887765432111 12224789999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccHHHHHHHHHHHHH-hhhccCCCCCCcccceeccccHHHHHhhhhccccccCCCCCCCCCC---CCCcceeEEEe
Q 008864          239 QLDEITVEKLQSLLDIALR-STAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQP---VSITGLETFSL  314 (550)
Q Consensus       239 ~~~~~~~~~L~~~l~~al~-~s~~~~d~~~~~l~~~~~~~~l~~~l~~~~~l~~~~~~~~~~~~~~---~~~~~~d~l~L  314 (550)
                      +...+++.+|+++|+.|+| .+.+..||++++++|.+.+.++..+++.+..+....-+ +....+|   ..+.|++.+.+
T Consensus       432 ~v~~i~p~kLqsLL~laLr~~s~a~~Dp~k~~L~i~~~~~~L~~ql~~~l~ie~~e~~-ans~~dP~~~l~lsGlE~faf  510 (734)
T KOG2001|consen  432 NVENISPEKLQSLLDLALREQSEAANDPMKEDLKICVDPTDLITQLSHILAIEPEEES-ANSQADPLEHLDLSGLEAFAF  510 (734)
T ss_pred             chhhcCHHHHHHHHHHHHHhhhcccCCchhhheeeeecHhhHHHHHHHHHhcCccccc-cccccCcchhccccchhhhee
Confidence            9999999999999999999 77778999999999999999999998876544421111 1112233   67899999999


Q ss_pred             eeecCCcceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCch-hhHHHHHHHHHHHHHHHHHHHHHHh
Q 008864          315 SYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASG-TAISRSSLLCRSMLKFINSLLHYLT  393 (550)
Q Consensus       315 ~y~v~wPL~lilt~~~l~~Y~~iFr~Ll~lk~~~~~L~~~w~~~~~~~~~~~~~-~~~~~~~~lr~~m~~fv~~l~~Y~~  393 (550)
                      +|+|||||++||++++|.|||.|||+++.|||++++|+.+|..++..|..+..+ +..+.++.+|++|++||+++.+|++
T Consensus       511 ~Y~vkwPLSlIIsrkal~kYQmLfR~lf~lkhVerqL~~~W~~~~~~r~~~~~~~q~~r~s~~LR~RMl~fiqsi~~Y~~  590 (734)
T KOG2001|consen  511 DYEVKWPLSLIISRKALIKYQMLFRYLFYLKHVERQLCETWQSHSKARSSNTKGAQIVRASFLLRQRMLNFIQSIEYYMT  590 (734)
T ss_pred             eeccCCceeeeEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998877666544 3467788999999999999999999


Q ss_pred             hhcccccHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCC
Q 008864          394 FEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLP-DLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEE  472 (550)
Q Consensus       394 ~~VI~~~~~~~~~~l~~~~~~d~l~~~H~~fL~~i~~~cfL~~~-~l~~~l~~il~~~l~F~~~~~~~~~~~l~~~~~~~  472 (550)
                      .+||||+|..|+..+++++++|+|+..|+.|||.|++.|+|+.+ .+.+.+.++..+|+.||..++.+++..   .-++.
T Consensus       591 ~eViEp~W~~l~~~l~~a~~vD~Vl~~he~fld~CLk~ClL~~~~~llk~~~kL~~vCl~f~~~~q~~~~~~---~~~~~  667 (734)
T KOG2001|consen  591 QEVIEPNWHSLEKCLKNARNVDEVLNEHEGFLDTCLKRCLLTLSPLLLKSFSKLYKVCLMFCSFTQKLTQSD---PTDEE  667 (734)
T ss_pred             HHhhcchHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccc---chhhh
Confidence            99999999999999999999999999999999999999999986 789999999999999999999987421   00111


Q ss_pred             CCCCCCChhHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHhcc
Q 008864          473 PSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSS  528 (550)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~F~~~~~~l~~~L~~  528 (550)
                      .+..+ .+.+ .  ..+-+.+.+    .-+.+.+-+.+.+..|++|+..|+..|++
T Consensus       668 ~~~~~-~~~~-d--~~~k~~~t~----li~~leei~~~~~~~f~~~l~~L~~rlsk  715 (734)
T KOG2001|consen  668 KNSVG-HPQF-D--EGRKEDDTL----LISKLEEIISNADKNFRDCLKNLLQRLSK  715 (734)
T ss_pred             hcccc-ccch-h--hhhhhhhHH----HHHHHHHHHHHhHHHHHHHHHHHHHHccc
Confidence            11111 0111 1  111111111    02234556777999999999999999994

>KOG2065 consensus Gamma-tubulin ring complex protein [Cytoskeleton] Back     alignment and domain information
>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin Back     alignment and domain information
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton] Back     alignment and domain information
>KOG4344 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query550
3rip_A677 Crystal Structure Of Human Gamma-Tubulin Complex Pr 6e-17
>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4 (Gcp4) Length = 677 Back     alignment and structure 
Iteration: 1

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 111/496 (22%), Positives = 198/496 (39%), Gaps = 63/496 (12%)
Query: 5   LEHQFRLG--RLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMA 62
           LE +F LG   LSI  + ++         +V  V+ +  +    G  +L  +   +    
Sbjct: 107 LEQEF-LGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQKIHGCQILETVYKHS--CG 163
Query: 63  GDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYD-- 120
           G   VRS LEK+           L  W+  G++ D + EFFI +  S    S   + D  
Sbjct: 164 GLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEE 223
Query: 121 --------AKYWRQ------------------RYSLK-DGIPSFL-ANIAGKILTTGKYL 152
                    K  R+                  ++SL+ + +PS++   +A KIL  G+ +
Sbjct: 224 DLGIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESV 283
Query: 153 NVMRECGHSAQVPTSENSKLL-----SFGSNHHYL------------ECVKVAYEFASGE 195
            +      +  V  +    +L     +F +  H L            + V       +  
Sbjct: 284 QMFE----NQNVNLTRKGSILKNQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEH 339
Query: 196 LLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIA 255
           L  L+ E  DL+G+L+ IK + LL +G+    F+D A+  L      +T   +      +
Sbjct: 340 LWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQS 399
Query: 256 LRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLS 315
                   D     L  ++E      + AT        S ++   E P S  G     LS
Sbjct: 400 AHKVLLDDDNLLPLLHLTIEYHGKEHKDAT--QAREGPSRETSPREAPAS--GWAALGLS 455
Query: 316 YKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSS 375
           YKVQWPL I+ +   L KY +VF+ L   + V+ +L   W +    +   ++ T   +  
Sbjct: 456 YKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLKSNQTDAIKWR 515
Query: 376 LLCRSMLKF-INSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLL 434
           L  R+ + F +++L +YL  +VLE  +  + +++ + +  + +   HD FL   L +  +
Sbjct: 516 L--RNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFI 573
Query: 435 HLPDLLKKVERLKSLC 450
            L  +   +  +  LC
Sbjct: 574 LLKPVFHCLNEILDLC 589

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query550
3rip_A677 Gamma-tubulin complex component 4; helix bundles, 2e-85
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens} Length = 677 Back     alignment and structure
 Score =  278 bits (710), Expect = 2e-85
 Identities = 111/588 (18%), Positives = 204/588 (34%), Gaps = 88/588 (14%)

Query: 1   MVAQLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAK 59
            +  LE +F     LSI  + ++         +V  V+ +  +    G  +L  +   + 
Sbjct: 103 ALLDLEQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQKIHGCQILETVYKHS- 161

Query: 60  AMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDY 119
              G   VRS LEK+           L  W+  G++ D + EFFI +  S    S   + 
Sbjct: 162 -CGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEE 220

Query: 120 DAK----------------------------YWRQRYSL-KDGIPSFL-ANIAGKILTTG 149
           D +                               +++SL  + +PS++   +A KIL  G
Sbjct: 221 DEEDLGIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVG 280

Query: 150 KYLNVMRECGHSAQ-------------VPTSENSKLLSFGSNHHYLECVKVAYEFASGEL 196
           + + +      +                      K     S   + + V       +  L
Sbjct: 281 ESVQMFENQNVNLTRKGSILKNQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHL 340

Query: 197 LNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIAL 256
             L+ E  DL+G+L+ IK + LL +G+    F+D A+  L      +T   +      + 
Sbjct: 341 WKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQSA 400

Query: 257 RSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSY 316
                  D     L  ++E      + AT    + +         +    +G     LSY
Sbjct: 401 HKVLLDDDNLLPLLHLTIEYHGKEHKDAT----QAREGPSRETSPREAPASGWAALGLSY 456

Query: 317 KVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSL 376
           KVQWPL I+ +   L KY +VF+ L   + V+ +L   W +    +    S    +    
Sbjct: 457 KVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLK-SNQTDAIKWR 515

Query: 377 LCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHL 436
           L   M   +++L +YL  +VLE  +  + +++ + +  + +   HD FL   L +  + L
Sbjct: 516 LRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILL 575

Query: 437 PDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQK 496
             +   +  +  LC  + +     +                                   
Sbjct: 576 KPVFHCLNEILDLCHSFCSLVSQNLGPL-------------------------------- 603

Query: 497 VMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVL 544
               D      +    + F+ +   L  ILSS    +   + LAQL+L
Sbjct: 604 ----DERGAAQLSILVKGFSRQSSLLFKILSSVRNHQ-INSDLAQLLL 646
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query550
3rip_A677 Gamma-tubulin complex component 4; helix bundles, 100.0
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1e-79  Score=681.19  Aligned_cols=505  Identities=22%  Similarity=0.352  Sum_probs=406.7

Q ss_pred             Chhccchhhhc-CCCcHHHHHHHhhchHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008864            1 MVAQLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCAS   79 (550)
Q Consensus         1 ~i~~le~~~~~-~~lsL~~L~~~l~p~~~~l~~L~~i~~~~~~~~~~g~~lL~~L~~~~~~~~g~~~~~~~l~~ll~~~~   79 (550)
                      +|+++|+++.. +.+||.+|+.+++|+..+|+.|+.|+.++..+.++||+||+.||+.+  .+|+|.+++++.+|+..|+
T Consensus       103 ~i~~lE~~~l~~~~~sL~~l~~~l~~~~~~l~~L~~l~~~~~~~~~~G~~lL~~L~~~~--~~Gd~~~~~~~~~Ll~~~~  180 (677)
T 3rip_A          103 ALLDLEQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQKIHGCQILETVYKHS--CGGLPPVRSALEKILAVCH  180 (677)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHTCCTHHHHHHHHHHH--HSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHH
Confidence            37899999964 58999999999999999999999999998766899999999999997  5999999999999999999


Q ss_pred             HHHHHHHHHHHhcceecCCCCcceEeeCCcccccccc----------------------------cccchhhhcccccc-
Q 008864           80 NAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLT----------------------------QDYDAKYWRQRYSL-  130 (550)
Q Consensus        80 ~p~~~~l~~Wi~~G~l~D~~~EFFI~~~~~~~~~~~~----------------------------~~~~~~~W~~~y~l-  130 (550)
                      +||+++|..||.+|+|.|||+||||++++..++....                            ++....+|+.+|+| 
T Consensus       181 ~~~~~~L~~Wl~~G~L~Dp~~EFFI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~w~~~y~l~  260 (677)
T 3rip_A          181 GVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDLGIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLR  260 (677)
T ss_dssp             HHHHHHHHHHHHHCCCCCTTSCSSEEEC--------------------------------------------CCCCEEEC
T ss_pred             HHHHHHHHHHHhCCeeCCCcchheeEeccccccccccccccccccccccccccccchhhhhhcccccccccchhcceeec
Confidence            9999999999999999999999999998654321000                            00012479999999 


Q ss_pred             ccCCCcchHH-HHHHHHHhHHHHHHHHHhcCCCC-----CCCccc------cccccCC--CchhHHHHHHHHHHHHHHHH
Q 008864          131 KDGIPSFLAN-IAGKILTTGKYLNVMRECGHSAQ-----VPTSEN------SKLLSFG--SNHHYLECVKVAYEFASGEL  196 (550)
Q Consensus       131 ~~~vP~fl~~-~a~~Il~~GK~l~~Lr~~~~~~~-----~p~~e~------~~l~~f~--~~~~~~~~I~~~~~~~s~~l  196 (550)
                      .+++|+|+++ +|+|||.|||++++||+++....     ++..+.      ..+...+  +...|...|+++|..+|+.+
T Consensus       261 ~~~lP~Fl~~~~A~kIl~~GKsln~lr~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~e~~I~~~~~~as~~L  340 (677)
T 3rip_A          261 VEILPSYIPVRVAEKILFVGESVQMFENQNVNLTRKGSILKNQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHL  340 (677)
T ss_dssp             GGGSCTTSCHHHHHHHHHHHHHHHTCCC-CCSCC---CTTCSHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhCcCccCHHHHHHHHHhhHHHHHHHccCCCCCcccccccchHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence            7899999997 99999999999999999765421     000000      0011110  12468889999999999999


Q ss_pred             HHHHHhhhcHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhhccCCCCCCcccceecc
Q 008864          197 LNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVER  276 (550)
Q Consensus       197 ~~ll~~~~~L~~hL~~l~~~fLL~~Gdf~~~f~~~~~~~l~~~~~~~~~~~L~~~l~~al~~s~~~~d~~~~~l~~~~~~  276 (550)
                      +++++++++|.+||+++|+||||++|||+..|++.++++|.+++.+++..+|+..|+.|++.+....+++.+.+.+.+..
T Consensus       341 l~lL~~~~~L~~hL~~Lk~yfLL~~Gdf~~~f~~~~~~~L~~~~~~~~~~~L~~~L~~a~~~~~~~~~~~~~~L~~~i~~  420 (677)
T 3rip_A          341 WKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEY  420 (677)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHTTCCCTTTGGGEEEEECC
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHccCCchhhHhcceEEeec
Confidence            99999999999999999999999999999999999999999999999999999999999998766556666666665543


Q ss_pred             ccHHHHHhhhhccccccCCCCCCCCCCCCCcceeEEEeeeecCCcceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008864          277 SSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQ  356 (550)
Q Consensus       277 ~~l~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~d~l~L~y~v~wPL~lilt~~~l~~Y~~iFr~Ll~lk~~~~~L~~~w~  356 (550)
                      ...... ..-.  +....+ ......+.+..|||+|.|+|+|||||++|||+++|.+|++||+|||++||+++.|+++|+
T Consensus       421 ~~~~~~-~~~~--~~~~~~-~~~~~~~~~~~~~d~l~L~Y~v~~PL~liit~~~l~~Y~~iF~~Ll~lkr~~~~L~~~w~  496 (677)
T 3rip_A          421 HGKEHK-DATQ--AREGPS-RETSPREAPASGWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWA  496 (677)
T ss_dssp             CC---------------------------CCTTTTEEEEECCCTTGGGTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccc-cccc--cccccc-cccccccCCccchheEEEEEeCCChHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            321100 0000  000000 001122356789999999999999999999999999999999999999999999999999


Q ss_pred             HhhhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCC
Q 008864          357 VHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHL  436 (550)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~lr~~m~~fv~~l~~Y~~~~VI~~~~~~~~~~l~~~~~~d~l~~~H~~fL~~i~~~cfL~~  436 (550)
                      .++..+..........+ +.+|++|+|||+++++|++.+||+++|.+|+++++++.|+|+|+++|++||++|+.+|||+.
T Consensus       497 ~~~~~~~~~~~~~~~~~-~~lr~~m~~Fv~~l~~Y~~~~Vie~~w~~~~~~l~~~~~~d~l~~~H~~~L~~i~~~c~L~~  575 (677)
T 3rip_A          497 LQMQRKHLKSNQTDAIK-WRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILL  575 (677)
T ss_dssp             HHTSGGGCCSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHhccccCCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHccCc
Confidence            87754433222223444 78999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCChhHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 008864          437 PDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFN  516 (550)
Q Consensus       437 ~~l~~~l~~il~~~l~F~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~F~  516 (550)
                      +++.++|.+|+++|++||..+++..      .  ..                            ++...+++++++++|+
T Consensus       576 ~~v~~~l~~il~~~~~F~~~~~~~~------~--~~----------------------------~~~~~~~~~~l~~~F~  619 (677)
T 3rip_A          576 KPVFHCLNEILDLCHSFCSLVSQNL------G--PL----------------------------DERGAAQLSILVKGFS  619 (677)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCC----------C----------------------------CHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhc------c--cc----------------------------cchhHHHHHHHHHHHH
Confidence            9999999999999999999986410      0  00                            1112468999999999


Q ss_pred             HHHHhHHHHhcccccccchHHHHHHHHhccCCC
Q 008864          517 NELQSLGPILSSSSQAEPYLTHLAQLVLGVGFD  549 (550)
Q Consensus       517 ~~~~~l~~~L~~~~~~~~~~~~l~~ll~rld~n  549 (550)
                      +++..|+++|++++ +.++.++|++||+|||||
T Consensus       620 ~~~~~L~~~l~~l~-~~~~~~~l~~Ll~rLd~N  651 (677)
T 3rip_A          620 RQSSLLFKILSSVR-NHQINSDLAQLLLRLDYN  651 (677)
T ss_dssp             HHHHHHHHHHHHHH-HTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-ccCCchHHHHHHHHhCch
Confidence            99999999999974 356779999999999998

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00