Citrus Sinensis ID: 008879

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550
Protein Sequence
MIVNYRSLTFSLLFFLSFSHGYGTSHFLASQTPLPSVSEAEAENVAVFAPDYNEGPSFAPVVGNDSESSSLVLAAKRTYRQDPLNGFKRYSGGWNIKDRHYWASVAYTAAPLFVIAAIWFLGFGACLLFICIFHFCCKRKPYGYSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGSTKKTLEYVVYQADTTVQKLQEVSNNLATAKQISVQKVFLPSNVQSDIDNVESKLNSSASTVADETAKNSHDIRDLLDSVRLALILIAAIMLVLTFLGFLFSIFGMQVLVYVLVIFGWILVTGTFILCGIFLLLHNVAGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTLTRTKEVTSQLVEVVNEVITNVSNINFAPAFVPFYFNQSGPLVPILCNPFHPDFTDRTCTAGELNLNNATQALSNYVCQVSPSGVCTTTGRLTPPLYDDMTAAVNLCNGLENYGPFLAELQDCTFVRETFNEIYRDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFWVIYGRERRYRIYTKQSDHQSLEEGKDSQDTRE
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHcHHcccEEcccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEcccEEEEEEEEEccccccccccccccccccccccccccccEEEEccccccccccccccccccccccEEEEccccccccccccccEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEcccccHHHHcccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
MIVNYRSLTFSLLFFLSfshgygtshflasqtplpsvseaeaenvavfapdynegpsfapvvgndsesSSLVLAAKRTyrqdplngfkrysggwnikdrhywASVAYTAAPLFVIAAIWFLGFGACLLFICIFHfcckrkpygysktAYALSLIFLIFFTIAAIIGCVVLYAGQvkfrgstkkTLEYVVYQADTTVQKLQEVSNNLATAKQISvqkvflpsnvqsdidNVESKlnssastvadetaknshdIRDLLDSVRLALILIAAIMLVLTFLGFLFSIFGMQVLVYVLVIFGWILVTGTFILCGIFLLLHNVAGDTCVAMNeyvqnpaahtaldsiipcvdkataqdtLTRTKEVTSQLVEVVNEVITNvsninfapafvpfyfnqsgplvpilcnpfhpdftdrtctagelnlNNATQALSNYvcqvspsgvctttgrltpplydDMTAAVNLCNGLENYGPFLAELQDCTFVRETFNEIYrdhcpdlqaySKWIYVGLAMVSTAVMLSLIFWVIYGrerryriytkqsdhqsleegkdsqdtre
Flexible Loop (DISEMBL)
MIVNYRSLTFSLLFFLSFSHGYGTSHFLASQTPLPSVSEAEAENVAVFAPDYNEGPSFAPVVGNDSESSSLVLAAKrtyrqdplngfkrysggwNIKDRHYWASVAYTAAPLFVIAAIWFLGFGACLLFICIFHFCCKRKPYGYSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGSTKKTLEYVVYQADTTVQKLQEVSNNLATAKQISVQKVFLPSNVQSDIDNVESKlnssastvadetaknshdirDLLDSVRLALILIAAIMLVLTFLGFLFSIFGMQVLVYVLVIFGWILVTGTFILCGIFLLLHNVAGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTLTRTKEVTSQLVEVVNEVITNVSNINFAPAFVPFYFNQSGPLVPILCNPFHPDFTDRTCTAGELNLNNATQALSNYVCQVSPSGVCTTTGRLTPPLYDDMTAAVNLCNGLENYGPFLAELQDCTFVRETFNEIYRDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFWVIYGRERRYRIytkqsdhqsleegkdsqdtre
Low Complexity Region (SEG)
MIVNYRsltfsllfflsfsHGYGTSHFLASQTPLPSVSEAEAENVAVFAPDYNEGPSFAPVVGNDSESSSLVLAAKRTYRQDPLNGFKRYSGGWNIKDRHYWASVAYTAAPLFVIAAIWFLGFGAcllficifhfccKRKPYGYSKTAYalsliflifftiaaiiGCVVLYAGQVKFRGSTKKTLEYVVYQADTTVQKLQEVSNNLATAKQISVQKVFLPSNVQSDIDNVESKLNSSASTVADETAKNSHDIRDLLDSVRlaliliaaiMLVLTFLGFLFSIFGMQVLVYVLVIFGWILVTGTFILCGIFLLLHNVAGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTLTRTKEVTSQLVEVVNEVITNVSNINFAPAFVPFYFNQSGPLVPILCNPFHPDFTDRTCTAGELNLNNATQALSNYVCQVSPSGVCTTTGRLTPPLYDDMTAAVNLCNGLENYGPFLAELQDCTFVRETFNEIYRDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFWVIYGRERRYRIYTKQSDHQSLEEGKDSQDTRE
Disordered region (IsUnstruct)
**VNYRSLTFSLLFFLSFSHGYGTSHFLAS**************VAVFA*********************LVLAAKRTYRQDPLNGFKRYSGGWNIKDRHYWASVAYTAAPLFVIAAIWFLGFGACLLFICIFHFCCKRKPYGYSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGSTKKTLEYVVYQADTTVQKLQEVSNNLATAKQISVQKVFL********************************IRDLLDSVRLALILIAAIMLVLTFLGFLFSIFGMQVLVYVLVIFGWILVTGTFILCGIFLLLHNVAGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTLTRTKEVTSQLVEVVNEVITNVSNINFAPAFVPFYFNQSGPLVPILCNPFHPDFTDRTCTAGELNLNNATQALSNYVCQVSPSGVCTTTGRLTPPLYDDMTAAVNLCNGLENYGPFLAELQDCTFVRETFNEIYRDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFWVIYGRERRYRIYT*******************
Disordered Region (DISOPRED)
***NYRSLTFSLLFFLSFSHGY***********************AVFAPDY********************LAAKRTYRQDPLNGFKRYSGGWNIKDRHYWASVAYTAAPLFVIAAIWFLGFGACLLFICIFHFCC**********AYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGSTKKTLEYVVYQADTTVQKLQEVSNNLATAKQISVQKVFLPSNVQSDIDNVESKLNSSASTVADETAKNSHDIRDLLDSVRLALILIAAIMLVLTFLGFLFSIFGMQVLVYVLVIFGWILVTGTFILCGIFLLLHNVAGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTLTRTKEVTSQLVEVVNEVITNVSNINFAPAFVPFYFNQSGPLVPILCNPFHPDFTDRTCTAGELNLNNATQALSNYVCQVSPSGVCTTTGRLTPPLYDDMTAAVNLCNGLENYGPFLAELQDCTFVRETFNEIYRDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFWVIYGRER*************************
Disordered Region (DISEMBL)
MIVNYRSLTFSLLFFLSFSHGYGTSHFLASQTPLPSVSEAEAENVAVFAPDYNEGPSFAPVVGNDSESSSLVLAAKRTYRQDPLNGFKRYSGGWNIKDRHYWASVAYTAAPLFVIAAIWFLGFGACLLFICIFHFCCKRKPYGYSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGSTKKTLEYVVYQADTTVQKLQEVSNNLATAKQISVQKVFLPSNVQSDIDNV******************SHDIRDLLDSVRLALILIAAIMLVLTFLGFLFSIFGMQVLVYVLVIFGWILVTGTFILCGIFLLLHNVAGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTLTRTKEVTSQLVEVVNEVITNVSNINFAPAFVPFYFNQSGPLVPILCNPFHPDFTDRTCTAGELNLNNATQALSNYVCQVSPSGVCTTTGRLTPPLYDDMTAAVNLCNGLENYGPFLAELQDCTFVRETFNEIYRDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFWVIYGRERRYRIYTK******************
Disordered Region (DISPRO)
MIVNYRSLTFSLLFFLSFSHGYGTSHFLASQTPLPSVSEAEAENVAVFAPDYNEGPSFAPVV****ESSSLVLAAKRTYRQDPLNGFKRYSGGWNIKDRHYWASVAYTAAPLFVIAAIWFLGFGACLLFICIFHFCCKRKPYGYSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGSTKKTLEYVVYQADTTVQKLQEVSNNLATAKQISVQKVFLPSNVQSDIDNVESKLNSSASTVADETAKNSHDIRDLLDSVRLALILIAAIMLVLTFLGFLFSIFGMQVLVYVLVIFGWILVTGTFILCGIFLLLHNVAGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTLTRTKEVTSQLVEVVNEVITNVSNINFAPAFVPFYFNQSGPLVPILCNPFHPDFTDRTCTAGELNLNNATQALSNYVCQVSPSGVCTTTGRLTPPLYDDMTAAVNLCNGLENYGPFLAELQDCTFVRETFNEIYRDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFWVIYGRERRYR**********************
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIVNYRSLTFSLLFFLSFSHGYGTSHFLASQTPLPSVSEAEAENVAVFAPDYNEGPSFAPVVGNDSESSSLVLAAKRTYRQDPLNGFKRYSGGWNIKDRHYWASVAYTAAPLFVIAAIWFLGFGACLLFICIFHFCCKRKPYGYSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGSTKKTLEYVVYQADTTVQKLQEVSNNLATAKQISVQKVFLPSNVQSDIDNVESKLNSSASTVADETAKNSHDIRDLLDSVRLALILIAAIMLVLTFLGFLFSIFGMQVLVYVLVIFGWILVTGTFILCGIFLLLHNVAGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTLTRTKEVTSQLVEVVNEVITNVSNINFAPAFVPFYFNQSGPLVPILCNPFHPDFTDRTCTAGELNLNNATQALSNYVCQVSPSGVCTTTGRLTPPLYDDMTAAVNLCNGLENYGPFLAELQDCTFVRETFNEIYRDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFWVIYGRERRYRIYTKQSDHQSLEEGKDSQDTRE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	550
224143225	503	predicted protein [Populus trichocarpa]	0.890	0.974	0.693	0.0
356515208	545	PREDICTED: uncharacterized protein LOC10	0.941	0.950	0.621	0.0
356507542	542	PREDICTED: uncharacterized protein LOC10	0.943	0.957	0.609	0.0
255557759	554	conserved hypothetical protein [Ricinus	0.887	0.880	0.691	0.0
225463055	551	PREDICTED: uncharacterized protein LOC10	0.847	0.845	0.690	0.0
42569311	545	uncharacterized protein [Arabidopsis tha	0.950	0.959	0.566	0.0
26452742	545	unknown protein [Arabidopsis thaliana]	0.950	0.959	0.566	0.0
297821921	544	hypothetical protein ARALYDRAFT_481382 [	0.945	0.955	0.565	0.0
116831117	546	unknown [Arabidopsis thaliana]	0.950	0.957	0.564	0.0
357466111	547	hypothetical protein MTR_3g106510 [Medic	0.86	0.864	0.661	0.0

>gi|224143225|ref|XP_002324886.1| predicted protein [Populus trichocarpa] gi|222866320|gb|EEF03451.1| predicted protein [Populus trichocarpa]

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/490 (69%), Positives = 404/490 (82%)

Query: 59  APVVGNDSESSSLVLAAKRTYRQDPLNGFKRYSGGWNIKDRHYWASVAYTAAPLFVIAAI 118
           AP+      S  LVLA KRTYR+DPLN FKR++GGWNI DRHYWASV +TAAPLF IAA+
Sbjct: 14  APIGEPVDNSPVLVLAPKRTYRKDPLNDFKRHTGGWNISDRHYWASVGFTAAPLFAIAAV 73

Query: 119 WFLGFGACLLFICIFHFCCKRKPYGYSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFR 178
           WFL FG CLLF C+ HFCCKR+ YGYS+TAYALSL+FLI F+I A+IGCVVLY  Q +F 
Sbjct: 74  WFLVFGLCLLFGCLCHFCCKRQRYGYSQTAYALSLVFLILFSICAMIGCVVLYTAQERFH 133

Query: 179 GSTKKTLEYVVYQADTTVQKLQEVSNNLATAKQISVQKVFLPSNVQSDIDNVESKLNSSA 238
            ST +TLEYVV QADTTV KL+ VS+ +A+AK + V +VFLPSNVQ+DID + +++NSSA
Sbjct: 134 KSTTETLEYVVNQADTTVDKLRAVSDFIASAKLVGVDEVFLPSNVQTDIDQIGTRINSSA 193

Query: 239 STVADETAKNSHDIRDLLDSVRLALILIAAIMLVLTFLGFLFSIFGMQVLVYVLVIFGWI 298
           S +AD+T  NS DI+DLLDSVR+ALI  AAIML+LTFLGFLFSIFGMQ LVY+LVI GWI
Sbjct: 194 SVLADKTVDNSEDIKDLLDSVRVALITTAAIMLLLTFLGFLFSIFGMQFLVYILVIVGWI 253

Query: 299 LVTGTFILCGIFLLLHNVAGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTLTRTKE 358
           LV GTFILCG FLLLHNVAGDTCVAM+ +V NP AHTALD I+PCVD+AT QDTL ++KE
Sbjct: 254 LVAGTFILCGTFLLLHNVAGDTCVAMDHWVHNPTAHTALDDILPCVDQATTQDTLIKSKE 313

Query: 359 VTSQLVEVVNEVITNVSNINFAPAFVPFYFNQSGPLVPILCNPFHPDFTDRTCTAGELNL 418
           +TSQLVEVVN+VITNVSN+NF+P F P Y NQSGPLVPILCNPF+ D T R C+AGE++L
Sbjct: 314 ITSQLVEVVNQVITNVSNLNFSPNFKPMYINQSGPLVPILCNPFYADLTIRPCSAGEVDL 373

Query: 419 NNATQALSNYVCQVSPSGVCTTTGRLTPPLYDDMTAAVNLCNGLENYGPFLAELQDCTFV 478
            NATQ  S+YVCQVSPSG+C TTGRLTP  Y  M+AA+N+  GL NY PFL EL DCTF 
Sbjct: 374 TNATQVWSSYVCQVSPSGICATTGRLTPAFYSQMSAAINVSYGLNNYAPFLIELGDCTFA 433

Query: 479 RETFNEIYRDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFWVIYGRERRYRIYTKQSDHQS 538
           RETF++IY+DHCP L+ YS+WIY+GL MVSTAVMLSLIFWVIYGRERR+R+Y+KQ   +S
Sbjct: 434 RETFSDIYKDHCPSLRRYSRWIYIGLVMVSTAVMLSLIFWVIYGRERRHRVYSKQLVSES 493

Query: 539 LEEGKDSQDT 548
            +  +  + +
Sbjct: 494 AQGSEREKSS 503

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515208|ref|XP_003526293.1| PREDICTED: uncharacterized protein LOC100816139 [Glycine max]

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/536 (62%), Positives = 411/536 (76%), Gaps = 18/536 (3%)

Query: 1   MIVNYRSLTFSLL--FFLSFSHGYGTSHFLASQTPLPSVSEAEAENVAVFAPDYNEGPSF 58
           M++NYR L F  L  FFLS       S  L+ Q    S +E E +NV   +  Y      
Sbjct: 1   MLLNYRPLHFVFLLTFFLS------ASCLLSHQA---SGTENEGKNVVGLSRLYVFAA-- 49

Query: 59  APVVGNDSESSSLVLAAKRTYRQDPLNGFKRYSGGWNIKDRHYWASVAYTAAPLFVIAAI 118
           AP      ESS   LAA+RT R+DPL+GF +Y  GWNI    YWASVAYTAAPLF IAA+
Sbjct: 50  APF-----ESSPFPLAAERTRRKDPLDGFNKYIYGWNITSSDYWASVAYTAAPLFSIAAV 104

Query: 119 WFLGFGACLLFICIFHFCCKRKPYGYSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFR 178
           WFLGFG CL+ I + +FC KR+PYGYS T YALSLI LI FT  A+IGC VLY GQ  F 
Sbjct: 105 WFLGFGLCLVIIGVCYFCHKREPYGYSPTCYALSLILLILFTFTALIGCAVLYIGQGSFH 164

Query: 179 GSTKKTLEYVVYQADTTVQKLQEVSNNLATAKQISVQKVFLPSNVQSDIDNVESKLNSSA 238
            S   TL+YVV+QAD+TV KL+ VS+ LA AKQ+ + +VFLP+NVQ+DID  E+ +N+SA
Sbjct: 165 HSMTHTLQYVVHQADSTVDKLRNVSDYLAQAKQVGIDRVFLPTNVQTDIDQAETDINNSA 224

Query: 239 STVADETAKNSHDIRDLLDSVRLALILIAAIMLVLTFLGFLFSIFGMQVLVYVLVIFGWI 298
           ST+AD+T +NS +I+DLLDS RLALI+IAA+MLVLTFLGFLFSIFG+Q+LVY+LVI GW+
Sbjct: 225 STLADKTKENSDNIQDLLDSARLALIIIAAVMLVLTFLGFLFSIFGIQLLVYILVIAGWV 284

Query: 299 LVTGTFILCGIFLLLHNVAGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTLTRTKE 358
           LVTGT ILCG+FL+LHN   D+C+A+NE++Q P AHTA+D I+PCVD ATAQ+TL+R+KE
Sbjct: 285 LVTGTLILCGLFLVLHNATADSCIAVNEWIQYPTAHTAMDDILPCVDNATAQETLSRSKE 344

Query: 359 VTSQLVEVVNEVITNVSNINFAPAFVPFYFNQSGPLVPILCNPFHPDFTDRTCTAGELNL 418
           VTS+LV +VN+VITNVSN+NFAP F P Y+NQSGPL+P+LCNPFHPD TDR C AGE+ L
Sbjct: 345 VTSELVNLVNQVITNVSNLNFAPNFTPLYYNQSGPLMPLLCNPFHPDMTDRQCDAGEVTL 404

Query: 419 NNATQALSNYVCQVSPSGVCTTTGRLTPPLYDDMTAAVNLCNGLENYGPFLAELQDCTFV 478
           +NATQ   N+VCQVSPS +C T GRLTP  Y+ ++A +N+ N L +Y P L ELQDCTFV
Sbjct: 405 SNATQVYGNFVCQVSPSEICMTQGRLTPTFYNQISAGINVGNALYDYAPSLIELQDCTFV 464

Query: 479 RETFNEIYRDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFWVIYGRERRYRIYTKQS 534
           RET ++I RDHCP LQ YS+WIY+GL MVS AVM SLIFW++YGRERR+R+Y K+S
Sbjct: 465 RETLSDISRDHCPGLQRYSRWIYIGLVMVSFAVMFSLIFWIVYGRERRHRLYRKES 520

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507542|ref|XP_003522523.1| PREDICTED: uncharacterized protein LOC100798323 [Glycine max]

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/533 (60%), Positives = 408/533 (76%), Gaps = 14/533 (2%)

Query: 2   IVNYRSLTFSLLFFLSFSHGYGTSHFLASQTPLPSVSEAEAENVAVFAPDYNEGPSFAPV 61
           +++YR L F  L  +  S    TS  L+ Q    S +E E ++V   +  Y      AP 
Sbjct: 1   MLSYRPLPFCFLLTIFLS----TSCLLSHQA---SGTENEGKDVVGLSRLYVFAA--APF 51

Query: 62  VGNDSESSSLVLAAKRTYRQDPLNGFKRYSGGWNIKDRHYWASVAYTAAPLFVIAAIWFL 121
                ESS L LAA+RT R+DPL+GF +Y  GWNI    YWASVAYTA PLF IAA+WFL
Sbjct: 52  -----ESSPLPLAAERTRRKDPLDGFNKYIYGWNITSSDYWASVAYTAVPLFSIAAVWFL 106

Query: 122 GFGACLLFICIFHFCCKRKPYGYSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGST 181
           GFG CLL I + +FC KR+PYGYS T YALSLI LI FT  A+IGC VLY GQ  F  S 
Sbjct: 107 GFGLCLLIIGVCYFCRKREPYGYSPTCYALSLILLILFTFTALIGCAVLYIGQGSFHHSM 166

Query: 182 KKTLEYVVYQADTTVQKLQEVSNNLATAKQISVQKVFLPSNVQSDIDNVESKLNSSASTV 241
             TL+YVV+QAD+TV KL+ VS+ LA AKQ+ + +VFLP+NVQ+DID  E+ +N+SAS +
Sbjct: 167 TNTLQYVVHQADSTVDKLRNVSDYLAQAKQVGIDRVFLPTNVQTDIDQAETDINNSASIL 226

Query: 242 ADETAKNSHDIRDLLDSVRLALILIAAIMLVLTFLGFLFSIFGMQVLVYVLVIFGWILVT 301
           AD+T +NS +I DLLDS  LALI+IAA+MLVLTFLGFLFSIFG+Q+LVY+LVI GW+LVT
Sbjct: 227 ADKTKENSDNIHDLLDSATLALIIIAAVMLVLTFLGFLFSIFGIQLLVYILVIAGWVLVT 286

Query: 302 GTFILCGIFLLLHNVAGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTLTRTKEVTS 361
           GT +LCG+FL+LHNV  D+CVA+NE++Q P AHTA+D I+PCVD ATAQ+TL+R+KEVTS
Sbjct: 287 GTLVLCGLFLVLHNVTADSCVAVNEWIQYPTAHTAMDDILPCVDNATAQETLSRSKEVTS 346

Query: 362 QLVEVVNEVITNVSNINFAPAFVPFYFNQSGPLVPILCNPFHPDFTDRTCTAGELNLNNA 421
           +LV +VN+VITNVSN+NFAP F P Y+NQSGPL+P+LCNPFHPD TDR C AGE+ L+NA
Sbjct: 347 ELVNLVNQVITNVSNLNFAPNFTPLYYNQSGPLMPLLCNPFHPDMTDRQCDAGEVTLSNA 406

Query: 422 TQALSNYVCQVSPSGVCTTTGRLTPPLYDDMTAAVNLCNGLENYGPFLAELQDCTFVRET 481
           TQ   N+VC+VSPS +C T GRLTP  Y+ ++A +N+ N L NY P L ELQDCTFVRET
Sbjct: 407 TQVYGNFVCRVSPSEICMTQGRLTPTFYNQISAGINVGNSLYNYAPSLIELQDCTFVRET 466

Query: 482 FNEIYRDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFWVIYGRERRYRIYTKQS 534
            ++I +DHCPDL+ +S+WIY+GL MVS AVM SLIFW++YGRERR+R++ K+S
Sbjct: 467 LSDISKDHCPDLRRHSRWIYIGLVMVSFAVMFSLIFWIVYGRERRHRLHRKES 519

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557759|ref|XP_002519909.1| conserved hypothetical protein [Ricinus communis] gi|223540955|gb|EEF42513.1| conserved hypothetical protein [Ricinus communis]

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/496 (69%), Positives = 412/496 (83%), Gaps = 8/496 (1%)

Query: 54  EGPSFAPVVGNDSESSSLVLAAKRTYRQDPLNGFKRYSGGWNIKDRHYWASVAYTAAPLF 113
           E P   PV     E+S+LVLA +RTYR+DPLNGFKRY+GGWNI DRHYWASV +TA PLF
Sbjct: 63  EAPISEPV-----ETSTLVLAPRRTYRKDPLNGFKRYTGGWNISDRHYWASVGFTAVPLF 117

Query: 114 VIAAIWFLGFGACLLFICIFHFCCKRKPYGYSKTAYALSLIFLIFFTIAAIIGCVVLYAG 173
            IAA+WFLGFG CLL +C+ +FCC RK YGYS+TAY LSLIFL+ F+I AIIGCVVLY G
Sbjct: 118 AIAAVWFLGFGLCLLLVCLCYFCCGRKSYGYSQTAYVLSLIFLVVFSIGAIIGCVVLYTG 177

Query: 174 QVKFRGSTKKTLEYVVYQADTTVQKLQEVSNNLATAKQISVQKVFLPSNVQSDIDNVESK 233
           Q KF  ST +TLEYVV QADTTVQKL++VS+ LA+AK I+V  V LPS+VQ+DID +E++
Sbjct: 178 QGKFHRSTTETLEYVVNQADTTVQKLRDVSSYLASAKIITVDNVSLPSSVQTDIDQIETR 237

Query: 234 LNSSASTVADETAKNSHDIRDLLDSVRLALILIAAIMLVLTFLGFLFSIFGMQVLVYVLV 293
           +NSSAS +AD T +NS DIRDLLDSVRLALI+IAAIML+LTFLGFLFSIFG+Q+LVY+LV
Sbjct: 238 INSSASILADRTVENSDDIRDLLDSVRLALIVIAAIMLLLTFLGFLFSIFGIQILVYILV 297

Query: 294 IFGWILVTGTFILCGIFLLLHNVAGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTL 353
           I GW+LV GTFILCG FLLLHNVA DTCVAMN +VQNP AHTALD ++PCVD ATAQ+TL
Sbjct: 298 IVGWMLVAGTFILCGTFLLLHNVAADTCVAMNHWVQNPTAHTALDDVLPCVDSATAQETL 357

Query: 354 TRTKEVTSQLVEVVNEVITNVSNINFAPAFVPFYFNQSGPLVPILCNPFHPDFTDRTCTA 413
           +R+KEVT + V+V+N VITNVSN+NF+P F   YFNQSGPLVPILCNP++ D TDR C++
Sbjct: 358 SRSKEVTLEFVDVINSVITNVSNLNFSPNFPSMYFNQSGPLVPILCNPYYHDLTDRPCSS 417

Query: 414 GELNLNNATQALSNYVCQVSPSGVCTTTGRLTPPLYDDMTAAVNLCNGLENYGPFLAELQ 473
           GE+++NNATQ   +YVCQVS +G+C TTGRLTP LY+ M A +++C+ L+NYG FL EL+
Sbjct: 418 GEVDMNNATQVWESYVCQVSSTGICITTGRLTPTLYNQMIAPLSVCSMLKNYGLFLIELE 477

Query: 474 DCTFVRETFNEIYRDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFWVIYGRERRYRIYTKQ 533
           DCTFVRETF++IYR  CP LQ YS+W+YVGL MVSTAVMLS+IFWVIYGRER +R+ TKQ
Sbjct: 478 DCTFVRETFDDIYRHQCPRLQRYSRWVYVGLVMVSTAVMLSIIFWVIYGRERHHRVSTKQ 537

Query: 534 ---SDHQSLEEGKDSQ 546
                 Q LE+ K SQ
Sbjct: 538 LQAESAQGLEDDKRSQ 553

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463055|ref|XP_002268417.1| PREDICTED: uncharacterized protein LOC100267143 [Vitis vinifera] gi|296084555|emb|CBI25576.3| unnamed protein product [Vitis vinifera]

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/466 (69%), Positives = 384/466 (82%)

Query: 67  ESSSLVLAAKRTYRQDPLNGFKRYSGGWNIKDRHYWASVAYTAAPLFVIAAIWFLGFGAC 126
           ++SSL+LAAKRT+R+DP +GF  Y+GGWNI + HYWASV+YTA P FV+  IWF+ FG C
Sbjct: 70  DNSSLILAAKRTHRKDPSDGFSYYTGGWNISNGHYWASVSYTAVPFFVLGGIWFVLFGLC 129

Query: 127 LLFICIFHFCCKRKPYGYSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGSTKKTLE 186
           L  IC+ + CC+R+PYGYS+TAYALSLI LI FTIAAIIGCVVLY GQ KF GST  TL 
Sbjct: 130 LSLICLCYCCCRREPYGYSRTAYALSLILLILFTIAAIIGCVVLYTGQGKFHGSTTSTLG 189

Query: 187 YVVYQADTTVQKLQEVSNNLATAKQISVQKVFLPSNVQSDIDNVESKLNSSASTVADETA 246
           YVV QA+TT + L+ VS  L+ AK+I +   FLP+NVQ++ID+ E+K+N+SA+T+  +T 
Sbjct: 190 YVVDQAETTSENLKNVSEYLSAAKRIGIGSSFLPANVQTNIDHAETKINASATTLDTKTQ 249

Query: 247 KNSHDIRDLLDSVRLALILIAAIMLVLTFLGFLFSIFGMQVLVYVLVIFGWILVTGTFIL 306
           KNS DI+DLLD+VRLALI++AA+ML+L FLGFLFSI G+Q LVY LVI GWILVT TFIL
Sbjct: 250 KNSKDIQDLLDAVRLALIVLAAVMLLLVFLGFLFSILGLQCLVYFLVIIGWILVTSTFIL 309

Query: 307 CGIFLLLHNVAGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTLTRTKEVTSQLVEV 366
           CGIFLLLHNV  DTCVAM+E+VQNP A TALD I+PCVD ATAQ+TL RTK+VT QLV V
Sbjct: 310 CGIFLLLHNVVADTCVAMDEWVQNPTARTALDDILPCVDNATAQETLLRTKDVTYQLVTV 369

Query: 367 VNEVITNVSNINFAPAFVPFYFNQSGPLVPILCNPFHPDFTDRTCTAGELNLNNATQALS 426
           VN VITNVSNINFAP FVP YFNQSGPLVP+LCNPF+ D T R C+AGE++L+NATQ  S
Sbjct: 370 VNTVITNVSNINFAPNFVPLYFNQSGPLVPVLCNPFNADLTARQCSAGEVDLDNATQVWS 429

Query: 427 NYVCQVSPSGVCTTTGRLTPPLYDDMTAAVNLCNGLENYGPFLAELQDCTFVRETFNEIY 486
           NYVCQVS SG+CTT GRLTP  Y+ M AAVN+  GL +YGP+L +LQDCTFVR+TF  I 
Sbjct: 430 NYVCQVSASGICTTPGRLTPSYYNQMAAAVNISYGLYHYGPYLVDLQDCTFVRQTFTVIS 489

Query: 487 RDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFWVIYGRERRYRIYTK 532
            DHCP+L+ YSKWIY GL MVS AVM+SLIFWVIY RERR+R+YTK
Sbjct: 490 DDHCPELRKYSKWIYTGLVMVSVAVMMSLIFWVIYARERRHRVYTK 535

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569311|ref|NP_180099.2| uncharacterized protein [Arabidopsis thaliana] gi|91806268|gb|ABE65862.1| unknown [Arabidopsis thaliana] gi|330252584|gb|AEC07678.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/535 (56%), Positives = 408/535 (76%), Gaps = 12/535 (2%)

Query: 16  LSFSHGYGTSHFLASQTPLPSVSEAEAENVAVFAPDYNEGPSFAPVVGNDS---ESSSLV 72
           LS SH +G S    S T  P+ S  +  +V  F     E P   P   N+    E +S+ 
Sbjct: 14  LSISHSHGASTIHISPTQPPAASSEKTGSVMKFI--VAEAPLLGPAGFNNPQVIEVASVA 71

Query: 73  LAAKRTYRQDPLNGFKRYSGGWNIKDRHYWASVAYTAAPLFVIAAIWFLGFGACLLFICI 132
           LAA+RTYR+DPLNGF++Y+GGWNI ++HYWASV+YTA PLFV+AA+WFLGFG CLL IC+
Sbjct: 72  LAAQRTYRKDPLNGFEKYTGGWNISNQHYWASVSYTAVPLFVLAAVWFLGFGICLLVICM 131

Query: 133 FHFCCKRKPYGYSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGSTKKTLEYVVYQA 192
            H C +    GYSK AY +SLIFL+ FT+ AIIGCV+LY+GQ+++  ST +TLEYV+ QA
Sbjct: 132 CHICHRTNSVGYSKVAYVVSLIFLLIFTVIAIIGCVLLYSGQIRYNKSTTETLEYVMSQA 191

Query: 193 DTTVQKLQEVSNNLATAKQISVQKVFLPSNVQSDIDNVESKLNSSASTVADETAKNSHDI 252
           D+T+ +L+ +S+ LA+AKQ +V +V LP+NVQ++ID +  KL+SS +T+ +++  +S+ I
Sbjct: 192 DSTISQLRAISDYLASAKQAAVLQVLLPANVQTEIDQIGVKLDSSVATITEKSTNSSNHI 251

Query: 253 RDLLDSVRLALILIAAIMLVLTFLGFLFSIFGMQVLVYVLVIFGWILVTGTFILCGIFLL 312
           R  LDSVR+ALI+++ +MLV+TFLG + SIFGMQV+VY LVI GWILVTGTFIL G FL+
Sbjct: 252 RHFLDSVRVALIVVSIVMLVVTFLGLVSSIFGMQVIVYTLVILGWILVTGTFILSGTFLV 311

Query: 313 LHNVAGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTLTRTKEVTSQLVEVVNEVIT 372
           LHN   DTCVAM+E+V+ P+++TALD I+PC D ATAQ+TL R++EVT QLVE++N VIT
Sbjct: 312 LHNATADTCVAMSEWVERPSSNTALDEILPCTDNATAQETLMRSREVTGQLVELINTVIT 371

Query: 373 NVSNINFAPAFVPFYFNQSGPLVPILCNPFHPDFTDRTCTAGELNLNNATQALSNYVCQV 432
           NVSNINF+P FVP Y+NQSGPL+P+LCNPF+ D TDR+C+ G+L+LNNAT+A +++VCQV
Sbjct: 372 NVSNINFSPVFVPMYYNQSGPLLPLLCNPFNHDLTDRSCSPGDLDLNNATEAWTSFVCQV 431

Query: 433 SPSGVCTTTGRLTPPLYDDMTAAVNLCNGLENYGPFLAELQDCTFVRETFNEIYRDHCPD 492
           S +G CTTTGRLTP LY  M + VN+  GL    PFL +LQDC++ ++TF +I  DHCP 
Sbjct: 432 SQNGTCTTTGRLTPALYSQMASGVNISTGLIRDAPFLVQLQDCSYAKQTFRDITNDHCPG 491

Query: 493 LQAYSKWIYVGLAMVSTAVMLSLIFWVIYGRERRYRIYTKQSDHQSLEEGKDSQD 547
           LQ Y  W+YVGLA+++TAVMLSL+FW+IY RERR+R        ++L E  +S++
Sbjct: 492 LQRYGYWVYVGLAILATAVMLSLMFWIIYSRERRHR-------KEALPEFSESKE 539

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26452742|dbj|BAC43452.1| unknown protein [Arabidopsis thaliana]

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/535 (56%), Positives = 408/535 (76%), Gaps = 12/535 (2%)

Query: 16  LSFSHGYGTSHFLASQTPLPSVSEAEAENVAVFAPDYNEGPSFAPVVGNDS---ESSSLV 72
           LS SH +G S    S T  P+ S  +  +V  F     E P   P   N+    E +S+ 
Sbjct: 14  LSISHSHGASTIHISPTQPPAASSEKTGSVMKFI--VAEAPLLGPAGFNNPQVIEVASVA 71

Query: 73  LAAKRTYRQDPLNGFKRYSGGWNIKDRHYWASVAYTAAPLFVIAAIWFLGFGACLLFICI 132
           LAA+RTYR+DPLNGF++Y+GGWNI ++HYWASV+YTA PLFV+AA+WFLGFG CLL IC+
Sbjct: 72  LAAQRTYRRDPLNGFEKYTGGWNISNQHYWASVSYTAVPLFVLAAVWFLGFGICLLVICM 131

Query: 133 FHFCCKRKPYGYSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGSTKKTLEYVVYQA 192
            H C +    GYSK AY +SLIFL+ FT+ AIIGCV+LY+GQ+++  ST +TLEYV+ QA
Sbjct: 132 CHICHRTNSVGYSKVAYVVSLIFLLIFTVIAIIGCVLLYSGQIRYNKSTTETLEYVMSQA 191

Query: 193 DTTVQKLQEVSNNLATAKQISVQKVFLPSNVQSDIDNVESKLNSSASTVADETAKNSHDI 252
           D+T+ +L+ +S+ LA+AKQ +V +V LP+NVQ++ID +  KL+SS +T+ +++  +S+ I
Sbjct: 192 DSTISQLRAISDYLASAKQAAVLQVLLPANVQTEIDQIGVKLDSSVATITEKSTNSSNHI 251

Query: 253 RDLLDSVRLALILIAAIMLVLTFLGFLFSIFGMQVLVYVLVIFGWILVTGTFILCGIFLL 312
           R  LDSVR+ALI+++ +MLV+TFLG + SIFGMQV+VY LVI GWILVTGTFIL G FL+
Sbjct: 252 RHFLDSVRVALIVVSIVMLVVTFLGLVSSIFGMQVIVYTLVILGWILVTGTFILSGTFLV 311

Query: 313 LHNVAGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTLTRTKEVTSQLVEVVNEVIT 372
           LHN   DTCVAM+E+V+ P+++TALD I+PC D ATAQ+TL R++EVT QLVE++N VIT
Sbjct: 312 LHNATADTCVAMSEWVERPSSNTALDEILPCTDNATAQETLMRSREVTGQLVELINTVIT 371

Query: 373 NVSNINFAPAFVPFYFNQSGPLVPILCNPFHPDFTDRTCTAGELNLNNATQALSNYVCQV 432
           NVSNINF+P FVP Y+NQSGPL+P+LCNPF+ D TDR+C+ G+L+LNNAT+A +++VCQV
Sbjct: 372 NVSNINFSPVFVPMYYNQSGPLLPLLCNPFNHDLTDRSCSPGDLDLNNATEAWTSFVCQV 431

Query: 433 SPSGVCTTTGRLTPPLYDDMTAAVNLCNGLENYGPFLAELQDCTFVRETFNEIYRDHCPD 492
           S +G CTTTGRLTP LY  M + VN+  GL    PFL +LQDC++ ++TF +I  DHCP 
Sbjct: 432 SQNGTCTTTGRLTPALYSQMASGVNISTGLIRDAPFLVQLQDCSYAKQTFRDITNDHCPG 491

Query: 493 LQAYSKWIYVGLAMVSTAVMLSLIFWVIYGRERRYRIYTKQSDHQSLEEGKDSQD 547
           LQ Y  W+YVGLA+++TAVMLSL+FW+IY RERR+R        ++L E  +S++
Sbjct: 492 LQRYGYWVYVGLAILATAVMLSLMFWIIYSRERRHR-------KEALPEFSESKE 539

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821921|ref|XP_002878843.1| hypothetical protein ARALYDRAFT_481382 [Arabidopsis lyrata subsp. lyrata] gi|297324682|gb|EFH55102.1| hypothetical protein ARALYDRAFT_481382 [Arabidopsis lyrata subsp. lyrata]

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/534 (56%), Positives = 407/534 (76%), Gaps = 14/534 (2%)

Query: 17  SFSHGYGTSHFLASQTPLPSVSEAEAENVAVFAPDYNEGPSFAPVVGND---SESSSLVL 73
           S SH   T H   +Q P+ S  +  +    + A    E P   P   N+   +E +S+ L
Sbjct: 16  SLSHEASTIHISPTQPPVASSEKTGSVMKFIVA----EAPLLGPGGFNNPQVNEVASVAL 71

Query: 74  AAKRTYRQDPLNGFKRYSGGWNIKDRHYWASVAYTAAPLFVIAAIWFLGFGACLLFICIF 133
           AA+RTYR+DPLNGF++Y+GGWNI ++HYWASV+YTA PLFV+AA+WFLGFG CLL IC+ 
Sbjct: 72  AAQRTYRKDPLNGFEKYTGGWNISNQHYWASVSYTAVPLFVLAAVWFLGFGICLLVICMC 131

Query: 134 HFCCKRKPYGYSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGSTKKTLEYVVYQAD 193
           H C +    GYSK AY +SLIFL+ FT+ AIIGCV+LY+GQ+++  ST +TLEYV+ QAD
Sbjct: 132 HICHRTNSVGYSKVAYVVSLIFLLIFTVIAIIGCVLLYSGQIRYNKSTTETLEYVMSQAD 191

Query: 194 TTVQKLQEVSNNLATAKQISVQKVFLPSNVQSDIDNVESKLNSSASTVADETAKNSHDIR 253
           +T+ +L+ +S+ LA+AKQ +V +V LP+NVQ++ID + +KLNSS +T+ +++  +S++IR
Sbjct: 192 STISQLRAISDYLASAKQAAVLQVLLPANVQTEIDQIGAKLNSSVATITEKSTNSSNNIR 251

Query: 254 DLLDSVRLALILIAAIMLVLTFLGFLFSIFGMQVLVYVLVIFGWILVTGTFILCGIFLLL 313
             LDSV +ALI+++ +MLV+TFLG + SIFGMQV+VY LVI GWILVTGTFIL G FL+L
Sbjct: 252 HFLDSVSVALIVVSIVMLVVTFLGLVSSIFGMQVIVYTLVILGWILVTGTFILSGTFLVL 311

Query: 314 HNVAGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTLTRTKEVTSQLVEVVNEVITN 373
           HN   DTCVAM+E+V+ P+++TALD I+PC D ATAQ+TL R++EVT QLV+++N VITN
Sbjct: 312 HNATADTCVAMSEWVERPSSNTALDEILPCTDNATAQETLMRSREVTGQLVDLINTVITN 371

Query: 374 VSNINFAPAFVPFYFNQSGPLVPILCNPFHPDFTDRTCTAGELNLNNATQALSNYVCQVS 433
           VSNINF+P FVP Y+NQSGPL+P+LCNPF+ D TDR+C+ GEL+LNNATQA +++VCQVS
Sbjct: 372 VSNINFSPVFVPMYYNQSGPLLPLLCNPFNHDLTDRSCSPGELDLNNATQAWTSFVCQVS 431

Query: 434 PSGVCTTTGRLTPPLYDDMTAAVNLCNGLENYGPFLAELQDCTFVRETFNEIYRDHCPDL 493
            +G C TTGRLTP LY  M + VN+  GL    PFL ELQDC++ ++TF +I  DHCP L
Sbjct: 432 QNGTCATTGRLTPALYSQMASGVNISTGLIRDAPFLVELQDCSYAKQTFRDITNDHCPGL 491

Query: 494 QAYSKWIYVGLAMVSTAVMLSLIFWVIYGRERRYRIYTKQSDHQSLEEGKDSQD 547
           Q Y  W+YVGLA+++TAVMLSL+FW+IY RERR+R        ++L E  DS++
Sbjct: 492 QRYGYWVYVGLAILATAVMLSLMFWIIYSRERRHR-------KEALPEFSDSKE 538

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116831117|gb|ABK28513.1| unknown [Arabidopsis thaliana]

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/535 (56%), Positives = 407/535 (76%), Gaps = 12/535 (2%)

Query: 16  LSFSHGYGTSHFLASQTPLPSVSEAEAENVAVFAPDYNEGPSFAPVVGNDS---ESSSLV 72
           LS SH +G S    S T  P+ S  +  +V  F     E P   P   N+    E +S+ 
Sbjct: 14  LSISHSHGASTIHISPTQPPAASSEKTGSVMKFI--VAEAPLLGPAGFNNPQVIEVASVA 71

Query: 73  LAAKRTYRQDPLNGFKRYSGGWNIKDRHYWASVAYTAAPLFVIAAIWFLGFGACLLFICI 132
           LAA+RTYR+DPLNGF++Y+GGWNI ++HYWASV+YTA PLFV+AA+WFLGFG CLL IC+
Sbjct: 72  LAAQRTYRKDPLNGFEKYTGGWNISNQHYWASVSYTAVPLFVLAAVWFLGFGICLLVICM 131

Query: 133 FHFCCKRKPYGYSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGSTKKTLEYVVYQA 192
            H C +    GYSK AY +SLIFL+ FT+ AIIGCV+LY+GQ+++  ST +TLEYV+ QA
Sbjct: 132 CHICHRTNSVGYSKVAYVVSLIFLLIFTVIAIIGCVLLYSGQIRYNKSTTETLEYVMSQA 191

Query: 193 DTTVQKLQEVSNNLATAKQISVQKVFLPSNVQSDIDNVESKLNSSASTVADETAKNSHDI 252
           D+T+ +L+ +S+ LA+AKQ +V +V LP+NVQ++ID +  KL+SS +T+ +++  +S+ I
Sbjct: 192 DSTISQLRAISDYLASAKQAAVLQVLLPANVQTEIDQIGVKLDSSVATITEKSTNSSNHI 251

Query: 253 RDLLDSVRLALILIAAIMLVLTFLGFLFSIFGMQVLVYVLVIFGWILVTGTFILCGIFLL 312
           R  LDSVR+ALI+++ +MLV+TFLG + SIFGM V+VY LVI GWILVTGTFIL G FL+
Sbjct: 252 RHFLDSVRVALIVVSIVMLVVTFLGLVSSIFGMXVIVYTLVILGWILVTGTFILSGTFLV 311

Query: 313 LHNVAGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTLTRTKEVTSQLVEVVNEVIT 372
           LHN   DTCVAM+E+V+ P+++TALD I+PC D ATAQ+TL R++EVT QLVE++N VIT
Sbjct: 312 LHNATADTCVAMSEWVERPSSNTALDEILPCTDNATAQETLMRSREVTGQLVELINTVIT 371

Query: 373 NVSNINFAPAFVPFYFNQSGPLVPILCNPFHPDFTDRTCTAGELNLNNATQALSNYVCQV 432
           NVSNINF+P FVP Y+NQSGPL+P+LCNPF+ D TDR+C+ G+L+LNNAT+A +++VCQV
Sbjct: 372 NVSNINFSPVFVPMYYNQSGPLLPLLCNPFNHDLTDRSCSPGDLDLNNATEAWTSFVCQV 431

Query: 433 SPSGVCTTTGRLTPPLYDDMTAAVNLCNGLENYGPFLAELQDCTFVRETFNEIYRDHCPD 492
           S +G CTTTGRLTP LY  M + VN+  GL    PFL +LQDC++ ++TF +I  DHCP 
Sbjct: 432 SQNGTCTTTGRLTPALYSQMASGVNISTGLIRDAPFLVQLQDCSYAKQTFRDITNDHCPG 491

Query: 493 LQAYSKWIYVGLAMVSTAVMLSLIFWVIYGRERRYRIYTKQSDHQSLEEGKDSQD 547
           LQ Y  W+YVGLA+++TAVMLSL+FW+IY RERR+R        ++L E  +S++
Sbjct: 492 LQRYGYWVYVGLAILATAVMLSLMFWIIYSRERRHR-------KEALPEFSESKE 539

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466111|ref|XP_003603340.1| hypothetical protein MTR_3g106510 [Medicago truncatula] gi|355492388|gb|AES73591.1| hypothetical protein MTR_3g106510 [Medicago truncatula]

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/473 (66%), Positives = 382/473 (80%)

Query: 67  ESSSLVLAAKRTYRQDPLNGFKRYSGGWNIKDRHYWASVAYTAAPLFVIAAIWFLGFGAC 126
           E+S L LAA+RT R+DPL+GF +Y+ GWNI D HYWAS AYTA P+F IAA+WFLGFG C
Sbjct: 30  ENSPLPLAAERTRRKDPLDGFNKYTSGWNISDHHYWASAAYTAVPVFSIAAVWFLGFGFC 89

Query: 127 LLFICIFHFCCKRKPYGYSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGSTKKTLE 186
           LL + + +FC K + YGYS T YALSLI LI FT   +IGC VLY GQ  F  ST  TL+
Sbjct: 90  LLLLIVCYFCRKTESYGYSSTYYALSLILLILFTFITLIGCAVLYIGQGSFHRSTTTTLQ 149

Query: 187 YVVYQADTTVQKLQEVSNNLATAKQISVQKVFLPSNVQSDIDNVESKLNSSASTVADETA 246
           YVVYQAD+ V KL+ VS+ LA AK + + +VFLP+NVQ+DID  E+ +N+SA T++D+T 
Sbjct: 150 YVVYQADSAVDKLRNVSDYLAQAKLVGIDRVFLPANVQTDIDAAETDINASAGTISDKTK 209

Query: 247 KNSHDIRDLLDSVRLALILIAAIMLVLTFLGFLFSIFGMQVLVYVLVIFGWILVTGTFIL 306
           +NS +I+DLLDSVRLALI+IAA+MLVLTFLGFLFSIFGMQVLVY+LVI GW LVTGT IL
Sbjct: 210 ENSDNIQDLLDSVRLALIIIAAVMLVLTFLGFLFSIFGMQVLVYILVIAGWFLVTGTLIL 269

Query: 307 CGIFLLLHNVAGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTLTRTKEVTSQLVEV 366
           CG+FL+LHNV  DTCVAMNE++Q P A+TALD I+PCVDKATAQ+TL R+KEVTS+LV +
Sbjct: 270 CGLFLILHNVTADTCVAMNEWIQYPTANTALDDILPCVDKATAQETLLRSKEVTSELVNL 329

Query: 367 VNEVITNVSNINFAPAFVPFYFNQSGPLVPILCNPFHPDFTDRTCTAGELNLNNATQALS 426
           VN+VITNVSNINFAP F P Y+NQSGPL+P+LC+PF PD TDR C +GE+N++NATQ   
Sbjct: 330 VNQVITNVSNINFAPNFTPLYYNQSGPLMPLLCDPFRPDMTDRQCDSGEVNISNATQVYG 389

Query: 427 NYVCQVSPSGVCTTTGRLTPPLYDDMTAAVNLCNGLENYGPFLAELQDCTFVRETFNEIY 486
           N+VCQVSPS +C T GRLTP  Y+ ++A +N+ N L NY P L ELQDCTFVRETF +IY
Sbjct: 390 NFVCQVSPSEICMTQGRLTPTFYNQISAGINVGNALYNYAPSLVELQDCTFVRETFTDIY 449

Query: 487 RDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFWVIYGRERRYRIYTKQSDHQSL 539
            +HCP L+ YSK IYVGL MVS AVM SLIFW +YGRERR+R+YT++S   +L
Sbjct: 450 NEHCPGLRHYSKLIYVGLIMVSFAVMFSLIFWGVYGRERRHRLYTQESKDSTL 502

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	550
TAIR|locus:2059567	545	AT2G25270 [Arabidopsis thalian	0.921	0.930	0.541	6.7e-152
TAIR|locus:2046079	541	AT2G12400 "AT2G12400" [Arabido	0.874	0.889	0.543	4.8e-142
TAIR|locus:2198923	538	AT1G80540 "AT1G80540" [Arabido	0.843	0.862	0.438	2.1e-100
TAIR|locus:2026276	557	AT1G71110 "AT1G71110" [Arabido	0.890	0.879	0.415	1.9e-99
TAIR|locus:2158581	509	AT5G67550 "AT5G67550" [Arabido	0.78	0.842	0.237	1.5e-24

TAIR|locus:2059567 AT2G25270 [Arabidopsis thaliana (taxid:3702)]

 Score = 1482 (526.7 bits), Expect = 6.7e-152, P = 6.7e-152
 Identities = 277/512 (54%), Positives = 368/512 (71%)

Query:    20 HGYGTSHFLASQTPLPSVSEAEAENVAVFAPDYNEGPSFAPVVGNDS---ESSSLVLAAK 76
             H +G S    S T  P+ S  +  +V  F     E P   P   N+    E +S+ LAA+
Sbjct:    18 HSHGASTIHISPTQPPAASSEKTGSVMKFI--VAEAPLLGPAGFNNPQVIEVASVALAAQ 75

Query:    77 RTYRQDPLNGFKRYSGGWNIKDRHYWASVAYTAAPLFVIAAIWFLGFGAXXXXXXXXXXX 136
             RTYR+DPLNGF++Y+GGWNI ++HYWASV+YTA PLFV+AA+WFLGFG            
Sbjct:    76 RTYRKDPLNGFEKYTGGWNISNQHYWASVSYTAVPLFVLAAVWFLGFGICLLVICMCHIC 135

Query:   137 XKRKPYGYSKTAYXXXXXXXXXXXXXXXXGCVVLYAGQVKFRGSTKKTLEYVVYQADTTV 196
              +    GYSK AY                GCV+LY+GQ+++  ST +TLEYV+ QAD+T+
Sbjct:   136 HRTNSVGYSKVAYVVSLIFLLIFTVIAIIGCVLLYSGQIRYNKSTTETLEYVMSQADSTI 195

Query:   197 QKLQEVSNNLATAKQISVQKVFLPSNVQSDIDNVESKLNSSASTVADETAKNSHDIRDLL 256
              +L+ +S+ LA+AKQ +V +V LP+NVQ++ID +  KL+SS +T+ +++  +S+ IR  L
Sbjct:   196 SQLRAISDYLASAKQAAVLQVLLPANVQTEIDQIGVKLDSSVATITEKSTNSSNHIRHFL 255

Query:   257 DSVRXXXXXXXXXMLVLTFLGFLFSIFGMQVLVYVLVIFGWILVTGTFILCGIFLLLHNV 316
             DSVR         MLV+TFLG + SIFGMQV+VY LVI GWILVTGTFIL G FL+LHN 
Sbjct:   256 DSVRVALIVVSIVMLVVTFLGLVSSIFGMQVIVYTLVILGWILVTGTFILSGTFLVLHNA 315

Query:   317 AGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTLTRTKEVTSQLVEVVNEVITNVSN 376
               DTCVAM+E+V+ P+++TALD I+PC D ATAQ+TL R++EVT QLVE++N VITNVSN
Sbjct:   316 TADTCVAMSEWVERPSSNTALDEILPCTDNATAQETLMRSREVTGQLVELINTVITNVSN 375

Query:   377 INFAPAFVPFYFNQSGPLVPILCNPFHPDFTDRTCTAGELNLNNATQALSNYVCQVSPSG 436
             INF+P FVP Y+NQSGPL+P+LCNPF+ D TDR+C+ G+L+LNNAT+A +++VCQVS +G
Sbjct:   376 INFSPVFVPMYYNQSGPLLPLLCNPFNHDLTDRSCSPGDLDLNNATEAWTSFVCQVSQNG 435

Query:   437 VCTTTGRLTPPLYDDMTAAVNLCNGLENYGPFLAELQDCTFVRETFNEIYRDHCPDLQAY 496
              CTTTGRLTP LY  M + VN+  GL    PFL +LQDC++ ++TF +I  DHCP LQ Y
Sbjct:   436 TCTTTGRLTPALYSQMASGVNISTGLIRDAPFLVQLQDCSYAKQTFRDITNDHCPGLQRY 495

Query:   497 SKWIYVGLAMVSTAVMLSLIFWVIYGRERRYR 528
               W+YVGLA+++TAVMLSL+FW+IY RERR+R
Sbjct:   496 GYWVYVGLAILATAVMLSLMFWIIYSRERRHR 527

GO:0005576 "extracellular region" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0031507 "heterochromatin assembly" evidence=RCA

GO:0045787 "positive regulation of cell cycle" evidence=RCA

TAIR|locus:2046079 AT2G12400 "AT2G12400" [Arabidopsis thaliana (taxid:3702)]

 Score = 1389 (494.0 bits), Expect = 4.8e-142, P = 4.8e-142
 Identities = 262/482 (54%), Positives = 335/482 (69%)

Query:    61 VVGNDS-ESSSLVLAAKRTYRQDPLNGFKRYSGGWNIKDRHYWASVAYTAAPLFVIAAIW 119
             V+  +S E+SSL+LAAKRT R+DP + FK Y+GGWNI + HY  SV YTAAP  +IA +W
Sbjct:    54 VIAEESGENSSLILAAKRTRRKDPADNFKLYTGGWNISNSHYLTSVGYTAAPFIIIALVW 113

Query:   120 FLGFGAXXXXXXXXXXXXKRKPYGYSKTAYXXXXXXXXXXXXXXXXGCVVLYAGQVKFRG 179
             F+ FG              R+ YGYS+ AY                GCV LY GQ KF  
Sbjct:   114 FVFFGLSLSLICLCYCCCARQSYGYSRVAYALSLILLISFTIAAIIGCVFLYTGQGKFHA 173

Query:   180 STKKTLEYVVYQADTTVQKLQEVSNNLATAKQISVQKVFLPSNVQSDIDNVESKLNSSAS 239
             ST  TL+YVV QA+ T + L+ VS+ L  AK++ VQ   LP +V S IDN++ K+NSSA+
Sbjct:   174 STTDTLDYVVSQANLTSENLRNVSDYLNAAKKVDVQSSILPQDVLSSIDNIQGKINSSAT 233

Query:   240 TVADETAKNSHDIRDLLDSVRXXXXXXXXXMLVLTFLGFLFSIFGMQVLVYVLVIFGWIL 299
             T++ +T +N   I+++LD +R         ML L F+GFL SIFG+Q LVY LVI GWIL
Sbjct:   234 TLSVKTMENQDKIQNVLDIMRLALVIIAAVMLFLAFIGFLLSIFGLQCLVYTLVILGWIL 293

Query:   300 VTGTFILCGIFLLLHNVAGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTLTRTKEV 359
             VT TF+LCG FLLLHNV GDTCVAM+++VQNP AHTALD I+PCVD ATA++TLTRTK V
Sbjct:   294 VTVTFVLCGGFLLLHNVVGDTCVAMDQWVQNPTAHTALDDILPCVDNATARETLTRTKLV 353

Query:   360 TSQLVEVVNEVITNVSNINFAPAFVPFYFNQSGPLVPILCNPFHPDFTDRTCTAGELNLN 419
             T QLV +++  I+N++N NF P F P Y+NQSGPL+P+LCNPF+ D +DR C  G+++LN
Sbjct:   354 TYQLVNLLDNAISNMTNRNFPPQFRPLYYNQSGPLMPLLCNPFNADLSDRQCQPGQVHLN 413

Query:   420 NATQALSNYVCQVSPSGVCTTTGRLTPPLYDDMTAAVNLCNGLENYGPFLAELQDCTFVR 479
             NAT+   N+ CQ+   G C+T GRLTP LY  M AAVN+  GL  YGPFLA+LQ C FVR
Sbjct:   414 NATEVWKNFTCQIVTPGTCSTPGRLTPKLYSQMAAAVNVSYGLYKYGPFLADLQGCDFVR 473

Query:   480 ETFNEIYRDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFWVIYGRERRYRIYTKQSDHQSL 539
              TF +I RDHCP L+ Y++WIYVGL +VS +VM SL+FWVIY RERR+R+YTK  +    
Sbjct:   474 STFTDIERDHCPGLKRYTQWIYVGLVVVSASVMSSLVFWVIYARERRHRVYTKDYNAMHS 533

Query:   540 EE 541
             E+
Sbjct:   534 ED 535

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2198923 AT1G80540 "AT1G80540" [Arabidopsis thaliana (taxid:3702)]

 Score = 996 (355.7 bits), Expect = 2.1e-100, P = 2.1e-100
 Identities = 205/468 (43%), Positives = 275/468 (58%)

Query:    71 LVLAAKRTYRQDPLNGFKRYSGGWNIKDRHYWASVAYTAAPLFVIAAIWF--LGFGAXXX 128
             LVLAA+RT R DPLN F  Y  GWN+ + HY ASV ++A P  VIA  WF  LG      
Sbjct:    64 LVLAAERTQRPDPLNHFNIYVDGWNVTNSHYIASVGFSAVPFIVIAIAWFVLLGLFLICS 123

Query:   129 XXXXXXXXXKRKPYGYSKTAYXXXXXXXXXXXXXXXXGCVVLYAGQVKFRGSTKKTLEYV 188
                       R+ YGYS+  Y                G  +LY GQ +F GS ++T  Y+
Sbjct:   124 CLCCCCCGCGRRNYGYSRVCYTLSLVFLLLFTIAAVIGSAMLYTGQNEFYGSVERTFMYI 183

Query:   189 VYQADTTVQKLQEVSNNLATAKQISVQKVFL-PSNVQSDIDNVESKLNSSASTVADETAK 247
             V QA   + KL  + +++ +AK I +    L P   + +ID+  + +  S  T  D  A 
Sbjct:   184 VKQATGVLTKLTSLWDSIQSAKDIQLDGHNLFPPEFRGNIDHFNNMIKMSNITYPDRVAN 243

Query:   248 NS-HDIRDLLDSVRXXXXXXXXXMLVLTFLGFLFSIFGMQVLVYVLVIFGWILVTGTFIL 306
              +   +   L+ VR         ML + FLG LFS  G++VLVY+LVI GWILVT T +L
Sbjct:   244 QTIRYLTGALNPVRYVLNVIAGVMLAVAFLGLLFSFCGLRVLVYLLVILGWILVTATILL 303

Query:   307 CGIFLLLHNVAGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTLTRTKEVTSQLVEV 366
               +FL+ HNV  DTC+AM+++V +PAA +AL  ++PC+D  T  +TL  TK +T+  V++
Sbjct:   304 SAVFLVFHNVVADTCMAMDQWVHDPAADSALSQLLPCLDPKTIGETLDITKTMTATAVDM 363

Query:   367 VNEVITNVSNINFAPAFVPFYFNQSGPLVPILCNPFHPDFTDRTCTAGELNLNNATQALS 426
              N    NVSN +  P   PFY NQSGPLVP+LCNP   +   R C   E+ L NA+Q   
Sbjct:   364 TNAYTVNVSNHDQFPPNAPFYHNQSGPLVPLLCNPLDQNHKPRPCAPDEVLLANASQVYK 423

Query:   427 NYVCQVSPSGVCTTTGRLTPPLYDDMTAAVNLCNGLENYGPFLAELQDCTFVRETFNEIY 486
              Y+CQV+  G+CTT GRLT   YD M  A+N+   L++YGPFLA + DCTFVR+TF +I 
Sbjct:   424 GYICQVNAEGICTTQGRLTQGSYDQMMGAINVAFTLDHYGPFLASIADCTFVRDTFRDIT 483

Query:   487 RDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFWVIYGRERRYRIYTKQS 534
               +CP L   S+WIY GLA +S AVM SLIFW+I+ RERR+R  TK+S
Sbjct:   484 TKNCPGLSITSQWIYAGLASLSGAVMFSLIFWLIFVRERRHRSQTKKS 531

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026276 AT1G71110 "AT1G71110" [Arabidopsis thaliana (taxid:3702)]

 Score = 987 (352.5 bits), Expect = 1.9e-99, P = 1.9e-99
 Identities = 206/496 (41%), Positives = 284/496 (57%)

Query:    55 GPSFAP-VVGNDSESSSLVLAAKRTYRQDPLNGFKRYSGGWNIKDRHYWASVAYTAAPLF 113
             G S AP    +D  S  L+LAA RT R D L  FK Y GGWNI + HYWASV +T AP F
Sbjct:    49 GISLAPGPESDDVVSDYLLLAAHRTKRPDILRAFKPYHGGWNITNNHYWASVGFTGAPGF 108

Query:   114 VIAAIWFLGFGAXXXXXXXXXXXXKRKPYGYSKTAYXXXXXXXXXXXXXXXXGCVVLYAG 173
             ++A IW L FG+              K  G S                    GC++L  G
Sbjct:   109 ILAVIWLLSFGSLLVVYHCFKWRICDKAKGSSFDTRRICFILLIVFTCVAAVGCILLSVG 168

Query:   174 QVKFRGSTKKTLEYVVYQADTTVQKLQEVSNNLATAKQISVQKVFLPSNVQSDIDNVESK 233
             Q KF      TL+YVV Q+D TV+ LQ V+  L+ AK I+V ++ +PS+V  +ID +   
Sbjct:   169 QDKFHTEAMHTLKYVVNQSDYTVEILQNVTQYLSLAKTINVTQIVIPSDVMGEIDKLNVN 228

Query:   234 LNSSASTVADETAKNSHDIRDLLDSVRXXXXXXXXXMLVLTFLGFLFSIFGMQVLVYVLV 293
             LN++A T+ + T  N+  I+ +  +VR         ML+L+F+G L S+   Q +V++ V
Sbjct:   229 LNTAAVTLGETTTDNAAKIKRVFYAVRSALITVATVMLILSFVGLLLSVLRHQHVVHIFV 288

Query:   294 IFGWILVTGTFILCGIFLLLHNVAGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTL 353
             + GWILV  TF+LCG+FL+L+N   DTCVAM E+V NP A TAL SI+PCVD+ T   TL
Sbjct:   289 VSGWILVAVTFVLCGVFLILNNAISDTCVAMKEWVDNPHAETALSSILPCVDQQTTNQTL 348

Query:   354 TRTKEVTSQLVEVVNEVITNVSNINFAPAFVPFYFNQSGPLVPILCNPFHPDFTDRTCTA 413
             +++K V + +V VVN  +  V+N N AP     Y+NQSGP +P LC PF  +  DR C+ 
Sbjct:   349 SQSKVVINSIVTVVNTFVYAVANTNPAPG-QDRYYNQSGPPMPPLCIPFDANMEDRQCSP 407

Query:   414 GELNLNNATQALSNYVCQVSPSGVCTTTGRLTPPLYDDMTAAVNLCNGLENYGPFLAELQ 473
              EL++ NA+    NY C+V+PSG+CTT GR+TP  +  + AAVN    LE+Y P L   +
Sbjct:   408 WELSIENASSVWENYKCEVTPSGICTTVGRVTPDTFGQLVAAVNESYALEHYTPPLLSFR 467

Query:   474 DCTFVRETFNEIYRDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFWVIYG-RERRYRIYTK 532
             DC FVRETF  I  D+CP L    + +  GL ++S  V+L L+ W+ Y  R +R  ++  
Sbjct:   468 DCNFVRETFMSITSDYCPPLVRNLRIVNAGLGLISVGVLLCLVLWIFYANRPQREEVFAD 527

Query:   533 ---QSDHQSLEEGKDS 545
                Q    S   G D+
Sbjct:   528 PHPQRKDDSFGNGLDT 543

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2158581 AT5G67550 "AT5G67550" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 1.5e-24, P = 1.5e-24
 Identities = 109/458 (23%), Positives = 188/458 (41%)

Query:    76 KRTYRQDPLNGFKRYSGGWNIKDRHYWASVAYTAAPLFVIAAIWFLGFGAXXXXXXXXXX 135
             +R  R+DPLN F+ Y GG+N++++HYWA+ A+T    + +A +  +              
Sbjct:    35 ERFKRRDPLNSFRYYDGGFNVRNKHYWAATAFTGIHGYAVAGVLII---VGICLGLYVAF 91

Query:   136 XXKRKPYGYSKTAYXXXXXXXXXXXXXXXXGCVVLYAGQVKFRGSTKKTLEYVVYQADTT 195
               KR+    ++  Y                   V+  G V       K       +   T
Sbjct:    92 SDKRRRVSSTRRRYLDRYYLPLFLLLLLFMFLSVVTTGIVIAANQRSKNR---TEEMKET 148

Query:   196 VQKL-QEVSNNLATA--KQISVQKVFLPSNVQSD-IDNVES-KLNSSASTVADETAKNSH 250
             + K  ++V+ N+ T       +Q + LP +  +  + NV + +L   +  +         
Sbjct:   149 IDKAGEDVNQNIRTVIVSLTKIQYLLLPYDQNTTHLLNVTTHRLGKGSRLIQSFLHHKGR 208

Query:   251 DIRDLLDSVRXXXXXXXXXM-LVLTFLGFLFSIFGMQVLVYVLVIF-GWILVTGTFILCG 308
              I DL   +            L L  L FL  +       +++VIF  WI+ T  ++L G
Sbjct:   209 SI-DLAIKISYVSHLMITSTNLFLLLLAFLPLLLHWHP-GFIMVIFLCWIITTLCWVLTG 266

Query:   309 IFLLLHNVAGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTLTRTKEVTSQLVEVVN 368
                 +H  A D C A N +VQNP   T L ++ PC+D   +  TL    E++  +   + 
Sbjct:   267 FDFFIHTFAEDLCSAFNGFVQNPRNST-LTNLFPCMDPLHSDKTLI---EISLMIHNFIT 322

Query:   369 EVITNVSNINFAPAFVPFYFNQS-GPLVPILCNPFHPD----FTDRTCTAGELNLNNATQ 423
             ++ + V+    + A        S  P   I+C+PF       +T ++C+ G + +     
Sbjct:   323 QLNSKVAESMRSNALTDRSNTVSWAPESGIICDPFVGQQINSYTPQSCSNGAIPIGEFPN 382

Query:   424 ALSNYVCQ-VSPSGVCTTTGRLTPPL-YDDMTAAVNLCNGLENYGPFLAELQDCTFVRET 481
              LS + C    P   C  TG+  P   Y  + A  N   G+ +  P    L +C  V++T
Sbjct:   383 ILSRFTCHDKDPPETCRITGKFIPEAAYLKVYAYSNSAQGMLDILPSFQNLTECLAVKDT 442

Query:   482 FNEIYRDHCPDLQA--YSKWIYVGLAMVSTAVMLSLIF 517
              + I  + C   +A  Y  W  + LA+    V+L L+F
Sbjct:   443 LSSIVSNQCDPFRASMYRLWASI-LALSLIMVVLVLLF 479


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      550       500   0.00084  119 3  11 22  0.37    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  295 KB (2153 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  39.09u 0.24s 39.33t   Elapsed:  00:00:02
  Total cpu time:  39.09u 0.24s 39.33t   Elapsed:  00:00:02
  Start:  Sat May 11 07:14:49 2013   End:  Sat May 11 07:14:51 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XVIII.1752.1 hypothetical protein (458 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	550
cd07912	418	cd07912, Tweety_N, N-terminal domain of the protei	0.003

>gnl|CDD|143653 cd07912, Tweety_N, N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 92/479 (19%), Positives = 156/479 (32%), Gaps = 121/479 (25%)

Query: 87  FKRYSGGWNIKDRHYWASVAYTAAPLFVIAAIWFLGFGACLLFICI--FHFCCKRKPYGY 144
           F R +  +N +D  Y  S+   A+    I A   +     LLF+ +     CC RKP   
Sbjct: 21  FHRVNSTFNPEDEIYQQSLLILAS----IPAACLIL---SLLFLLVYLITRCCDRKPTEE 73

Query: 145 SK----TAYALSLIFLIFFTIAAIIGC----VVLYA------GQVKFRGSTKKTLEYVV- 189
                      SL+      IA ++ C    V LY       G V+   S +     V  
Sbjct: 74  RPRHSICCLKWSLV------IATLLCCAAIGVGLYGNDETHDGVVQLTYSLRNANHTVAG 127

Query: 190 --YQADTTVQKLQE-VSNNLATAKQISVQKVFLPSNVQSDIDNVESKLNSSASTVADETA 246
              Q   T   L   V   L   + I   +V     +Q     +   L   A+  A +  
Sbjct: 128 IDNQTSDTEASLNVTVEPQLTNLEDIFDARVNKTDYLQ-----IVQGLQQMATNAAQQLT 182

Query: 247 KNSH------------DIRDLLDSVR-LALILIAAIMLVLTFLGFLFSIFGMQVLVYVLV 293
                           D   L +S R LA + + +++LV+  +  +      + L+ V  
Sbjct: 183 GIPFWSLVGVSLTKLADQVSLYESYRWLAYLGLLSLLLVICLVLLVGLARHSRCLLIVFS 242

Query: 294 IFGWILVTGTFILCGIFLLLHNVAGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTL 353
           + G   +  +++  G++L       D CV  ++YV                         
Sbjct: 243 VCGLFALIISWLSLGLYLASAVALSDFCVDPDDYV------------------------- 277

Query: 354 TRTKEVTSQLVEVVNEVITNVSNINFAPAFVPFYFNQSGPLVPILCNPFHPD-FTDRTCT 412
               +  S L                +   + +Y         + C P   + F  R   
Sbjct: 278 --RNQTPSGL----------------SSDILQYY---------LTCEPSTTNPFQQR--- 307

Query: 413 AGELNLNNATQALSNYVCQVSPSGVCTTTGRLTPPLYDDMTAAVNLCNGLENYGPFLAEL 472
                L  + +AL+N   QV   G+        P   D++ +     N  E     L  L
Sbjct: 308 -----LTESQRALTNMQSQV--QGLLREAVFEFPTAEDNLLSLQGDLNSTEINLHQLTAL 360

Query: 473 QDCTFVRETFNEIYRDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFWV-----IYGRERR 526
            DC  + + + E  R  C D       +Y+ L  +  A++ +++  V     IY R+R 
Sbjct: 361 LDCRGLHKDYVEALRGLCYD--GLEGLLYLLLFSLLAALLFTILVCVDSHTWIYIRKRD 417

The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins. Length = 418

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	550
cd07912	418	Tweety_N N-terminal domain of the protein encoded	100.0
PF04906	406	Tweety: Tweety; InterPro: IPR006990 None of the me	100.0
KOG4433	526	consensus Tweety transmembrane/cell surface protei	99.97
PF05478	806	Prominin: Prominin; InterPro: IPR008795 The promin	98.79
KOG4331	865	consensus Polytopic membrane protein Prominin [Gen	97.37
cd07912	418	Tweety_N N-terminal domain of the protein encoded	96.86
PF04906	406	Tweety: Tweety; InterPro: IPR006990 None of the me	95.03
KOG4433	526	consensus Tweety transmembrane/cell surface protei	95.01
PF05478	806	Prominin: Prominin; InterPro: IPR008795 The promin	92.95
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	83.45

>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels

Probab=100.00  E-value=2.7e-41  Score=359.33  Aligned_cols=361  Identities=18%  Similarity=0.234  Sum_probs=247.2

Q ss_pred             CcccccCCccCCChhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcccCCC---CCCCCchhHHHHHHHHHHHHHH
Q 008879           86 GFKRYSGGWNIKDRHYWASVAYTAAPLFVIAAIWFLGFGACLLFICIFHFCCKRK---PYGYSKTAYALSLIFLIFFTIA  162 (550)
Q Consensus        86 ~fk~Y~ggfni~n~hYwaSv~ftg~pg~iIAalwfi~fgl~lli~~~c~CCc~rk---~~~ysr~~~~~slillll~ti~  162 (550)
                      .|++.+++|||+|+||||||+|+|+    +|++||+++|+++++|++|+|||||+   +++|+.+|+.|+++++.++++ 
T Consensus        20 ~f~~v~~~F~p~~~~Y~~Sv~~~a~----iaavwlil~ll~ll~~~~~~CCcr~~~~~~k~~s~~c~~~sLiiltL~~~-   94 (418)
T cd07912          20 TFHRVNSTFNPEDEIYQQSLLILAS----IPAACLILSLLFLLVYLITRCCDRKPTEERPRHSICCLKWSLVIATLLCC-   94 (418)
T ss_pred             eEEecCCCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCccHHHHHHHHHHHHHH-
Confidence            4678899999999999999999997    89999999999999999999999997   788888999999887777777 


Q ss_pred             HHHHHhhhhccchhhccchhhhHHHHHhchHHHHHHHHHHHHHHHhhhhccccc-------cccCCCccccHHHHHHHHH
Q 008879          163 AIIGCVVLYAGQVKFRGSTKKTLEYVVYQADTTVQKLQEVSNNLATAKQISVQK-------VFLPSNVQSDIDNVESKLN  235 (550)
Q Consensus       163 aIaG~ivl~~Gn~~fh~~~~~tl~yvv~~an~tv~~l~nVt~~l~~~k~~~v~~-------~~lP~d~~~~id~~~~~Ln  235 (550)
                        +|.+++|+||+++|++++++.+++ +++|+++++++|+++++++.-+.++++       .+-....+++..++.++++
T Consensus        95 --aaIi~~f~GN~~~h~gV~~t~~si-~~an~tv~~l~nqv~~l~~al~~t~~~~L~~L~~il~~~~~~~~~~~~~~~~q  171 (418)
T cd07912          95 --AAIGVGLYGNDETHDGVVQLTYSL-RNANHTVAGIDNQTSDTEASLNVTVEPQLTNLEDIFDARVNKTDYLQIVQGLQ  171 (418)
T ss_pred             --HHHHHHhhccHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHhCCCcchhhHHHHHHHHH
Confidence              555669999999999999999998 899999999999988888764333431       1111112356677778888


Q ss_pred             hhHHHHHHHhhh---------hhHHHH---HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 008879          236 SSASTVADETAK---------NSHDIR---DLLDSVRL----ALILIAAIMLVLTFLGFLFSIFGMQVLVYVLVIFGWIL  299 (550)
Q Consensus       236 s~a~~i~~k~~~---------n~~~I~---k~l~~v~l----~l~iva~vmllL~llglv~si~g~r~lv~~lvilgwil  299 (550)
                      ++++++.+.+.+         |...|.   +..+.+|+    +++++..+.++++++|++   .+.||.+++++++|++.
T Consensus       172 ~~~~n~~~~~~~~~~~~~~~~~l~~i~~~~~~~E~~Rw~~~l~lL~~~lviC~~~l~gl~---r~Sr~~li~~s~~g~l~  248 (418)
T cd07912         172 QMATNAAQQLTGIPFWSLVGVSLTKLADQVSLYESYRWLAYLGLLSLLLVICLVLLVGLA---RHSRCLLIVFSVCGLFA  248 (418)
T ss_pred             HHHHHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchHHHHHHHHHHHH
Confidence            888887755432         233333   23334553    444444444444444443   68899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcchhhhchhhhhhCCCCCCCCccccccCCcchhhHHHhhhHhhhhHHHHHHHHHhhhhcccCC
Q 008879          300 VTGTFILCGIFLLLHNVAGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTLTRTKEVTSQLVEVVNEVITNVSNINF  379 (550)
Q Consensus       300 v~~tWil~G~fl~l~~~vsDtCvAmdeyv~nP~~~T~L~~iLPC~d~~ta~~~l~~skev~~~lv~~vN~vis~~sn~~~  379 (550)
                      ++++|++.|+|++.+++++|+|++||+|+.+.+...-..|                          ++            
T Consensus       249 l~~~W~~~~~~l~~~v~~sDfC~~pd~yi~~~~~~~~~~d--------------------------i~------------  290 (418)
T cd07912         249 LIISWLSLGLYLASAVALSDFCVDPDDYVRNQTPSGLSSD--------------------------IL------------  290 (418)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhcCHHHHHHhccccccchH--------------------------HH------------
Confidence            9999999999999999999999999999998863210000                          00            


Q ss_pred             CCCCCcccccCCCCCCccccCCCCCCCCCCCCCCCcccccchhhhhccceeccCCCCcccCCCccChhHHHHHHHHHHHH
Q 008879          380 APAFVPFYFNQSGPLVPILCNPFHPDFTDRTCTAGELNLNNATQALSNYVCQVSPSGVCTTTGRLTPPLYDDMTAAVNLC  459 (550)
Q Consensus       380 ~~~~~~~y~nqsgp~~p~lCnPf~~~~~~~~C~~g~v~~~~~~~v~~~~~C~~~~~~~C~t~gr~tp~~y~q~~a~~n~s  459 (550)
                            -||.+..|..+   |||...++..     ...+.+..+.++...=..  -..+.+.+    +....++.--|.+
T Consensus       291 ------~yy~~C~~~~~---npF~~~l~~~-----~~~l~~~~~~~~~~~~~~--~~~~~~~~----~~l~~~~~~ln~~  350 (418)
T cd07912         291 ------QYYLTCEPSTT---NPFQQRLTES-----QRALTNMQSQVQGLLREA--VFEFPTAE----DNLLSLQGDLNST  350 (418)
T ss_pred             ------HHHhcCCCCCC---CcchHhhHHH-----HHHHHHHHHHHHHHHHHh--cccCCccc----chHHHHHHHHHHH
Confidence                  14444443332   5665444321     112222222111111000  00111110    1123344444554


Q ss_pred             HhhhhhccccccCCCchhHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008879          460 NGLENYGPFLAELQDCTFVRETFNEIYRDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFWVI  520 (550)
Q Consensus       460 ~~L~~~~P~l~~L~dC~fVrdtF~~I~~~~C~~L~~~~~~v~~gl~~lS~~~~l~~i~Wv~  520 (550)
                      ...   .-.|..++||.-+.+-+.+-...-|-+--.++-.  ..+..+-+|.+++++.|+.
T Consensus       351 e~~---l~~l~a~ldCr~~h~~Y~~a~~g~C~~gl~Gl~~--~~l~s~~~a~~~~~lv~~~  406 (418)
T cd07912         351 EIN---LHQLTALLDCRGLHKDYVEALRGLCYDGLEGLLY--LLLFSLLAALLFTILVCVD  406 (418)
T ss_pred             HHH---HHHHHhhcchHHHHHHHHHHHHccccchHHHHHH--HHHHHHHHHHHHHHHHHhc
Confidence            433   4457789999999999999999999876665443  3444455677777777654

The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.

>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised

Probab=100.00  E-value=5.5e-35  Score=312.46  Aligned_cols=361  Identities=19%  Similarity=0.267  Sum_probs=239.4

Q ss_pred             cccccCCccCCChhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCc---hhHHHHHHHHHHHHHHH
Q 008879           87 FKRYSGGWNIKDRHYWASVAYTAAPLFVIAAIWFLGFGACLLFICIFHFCCKRKPYGYSK---TAYALSLIFLIFFTIAA  163 (550)
Q Consensus        87 fk~Y~ggfni~n~hYwaSv~ftg~pg~iIAalwfi~fgl~lli~~~c~CCc~rk~~~ysr---~~~~~slillll~ti~a  163 (550)
                      |+..+++|+|+|+.|+||+++.|.    ++++|+++.++++++|++|+|||||++++.++   +|..|+++++.++++  
T Consensus         1 ~~~~~~~F~p~~~~Y~qsL~~la~----v~~~~l~l~Ll~ll~yl~~~CC~r~~~~~~~~~~~~c~~~~~~ia~lvc~--   74 (406)
T PF04906_consen    1 FQPVSSTFNPQDEEYQQSLLILAS----VAAACLALSLLFLLIYLICRCCCRRPREEKSSRRCCCLTWSLVIATLVCC--   74 (406)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCCcchHHHHHHHHHHHH--
Confidence            678899999999999999999996    89999988899999999999999997665544   388899765555555  


Q ss_pred             HHHHhhhhccchhhccchhhhHHHHHhchHHHHHHHHH-HHHHHHhhhhcccccccc----CCCccccHHHHHHHHHhhH
Q 008879          164 IIGCVVLYAGQVKFRGSTKKTLEYVVYQADTTVQKLQE-VSNNLATAKQISVQKVFL----PSNVQSDIDNVESKLNSSA  238 (550)
Q Consensus       164 IaG~ivl~~Gn~~fh~~~~~tl~yvv~~an~tv~~l~n-Vt~~l~~~k~~~v~~~~l----P~d~~~~id~~~~~Lns~a  238 (550)
                       +|.++|||||+++|+++.+ +.|..+++|+++.++++ ++++.+.++. .+++++.    -.+.++++.++.++++..+
T Consensus        75 -aaigvG~yGN~e~~~gv~~-~~~s~~~~n~t~~~i~~~v~~~~~~l~~-~v~~~l~~Le~~~~~~~~~~~~~~~~~~~~  151 (406)
T PF04906_consen   75 -AAIGVGFYGNSETNDGVYQ-LIYSLRNANHTLSGIDNLVSDTTEALNS-TVEQHLTRLEEIFAKRTDLLQALQFLQQQA  151 (406)
T ss_pred             -HHHHcccccchhhhccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence             7778999999999999999 67789999999999999 5665555552 2322211    1123455677777777777


Q ss_pred             HHHHHHhhh---------hhHHHHH---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 008879          239 STVADETAK---------NSHDIRD---LLDSVRLALIL-IAAIMLVLTFLGFLFSIFGMQVLVYVLVIFGWILVTGTFI  305 (550)
Q Consensus       239 ~~i~~k~~~---------n~~~I~k---~l~~v~l~l~i-va~vmllL~llglv~si~g~r~lv~~lvilgwilv~~tWi  305 (550)
                      +++..++.+         +...+.+   ..+..||..++ +..+++++++++++....+.||.++.+.++|++.++++|+
T Consensus       152 ~~v~~~l~~l~~~~~~~~~l~~~~~~~~~~E~yRw~~~~~lL~l~l~icl~~l~glar~Sk~~li~~~v~gll~lvisW~  231 (406)
T PF04906_consen  152 ENVVQQLDELPFWRNVSLSLEQLAEQVSFYEYYRWLAYLGLLILDLVICLLGLLGLARQSKCLLIVFSVLGLLALVISWI  231 (406)
T ss_pred             HHHHHHHhcCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceEEEeeeccHHHHHHHHH
Confidence            777666543         2222222   22334554332 2233444444444434478899999999999999999999


Q ss_pred             HHHHHHHHHhhcchhhhchhhhhhCCCCCCCCccccccCCcchhhHHHhhhHhhhhHHHHHHHHHhhhhcccCCCCCCCc
Q 008879          306 LCGIFLLLHNVAGDTCVAMNEYVQNPAAHTALDSIIPCVDKATAQDTLTRTKEVTSQLVEVVNEVITNVSNINFAPAFVP  385 (550)
Q Consensus       306 l~G~fl~l~~~vsDtCvAmdeyv~nP~~~T~L~~iLPC~d~~ta~~~l~~skev~~~lv~~vN~vis~~sn~~~~~~~~~  385 (550)
                      +.|++++++++++|+|++||+|+.|-+.+....                          ++++                 
T Consensus       232 ~~g~~la~aV~~SDFC~~Pd~~i~~~~~~~~~~--------------------------di~~-----------------  268 (406)
T PF04906_consen  232 SLGLELAAAVGLSDFCVDPDTYILNQTQNETSA--------------------------DILQ-----------------  268 (406)
T ss_pred             HHHHHHHhccchhhhccCHHHHHHHhcccccch--------------------------hHHH-----------------
Confidence            999999999999999999999999887554210                          0111                 


Q ss_pred             ccccCCCCCCccccCCCCCCCCCCCCCCCcccccchhhhhccceeccCCCCcccCCCccChhHHHHHHHHHHHHHhhhhh
Q 008879          386 FYFNQSGPLVPILCNPFHPDFTDRTCTAGELNLNNATQALSNYVCQVSPSGVCTTTGRLTPPLYDDMTAAVNLCNGLENY  465 (550)
Q Consensus       386 ~y~nqsgp~~p~lCnPf~~~~~~~~C~~g~v~~~~~~~v~~~~~C~~~~~~~C~t~gr~tp~~y~q~~a~~n~s~~L~~~  465 (550)
                       ||...+|..+   |||...++.-+     -.+.++...+....-...  ...-+.+    ....+++..-|.+.   ..
T Consensus       269 -YYl~C~~~~~---nPFqq~l~~~~-----~al~~~q~~~~~L~~~a~--~~fp~~~----~~l~~i~~~Ln~~e---~~  330 (406)
T PF04906_consen  269 -YYLTCSQSVS---NPFQQRLTSSQ-----RALSNMQSQVQGLLREAV--PLFPTAQ----EPLLAIQEDLNSTE---RS  330 (406)
T ss_pred             -HhhcCCCCCC---CchHHHHHHHH-----HHHHHHHHHHHHHHHHHH--hhCCCcc----chHHHHHHHHHHHH---HH
Confidence             4444444333   55544332110     012222222222221000  0000000    12233444444443   34


Q ss_pred             ccccccCCCchhHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008879          466 GPFLAELQDCTFVRETFNEIYRDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFWV  519 (550)
Q Consensus       466 ~P~l~~L~dC~fVrdtF~~I~~~~C~~L~~~~~~v~~gl~~lS~~~~l~~i~Wv  519 (550)
                      ...+..++||.-+.+.|.+....-|.+--.++-.++..-  +-++.++++++|+
T Consensus       331 l~~l~alldCr~lh~dY~~al~g~C~dg~eGl~~l~l~s--ll~al~f~~~v~~  382 (406)
T PF04906_consen  331 LHQLTALLDCRGLHKDYVDALRGLCYDGLEGLLYLLLFS--LLAALLFSILVCV  382 (406)
T ss_pred             HHHHHhhcccccHHHHHHHHHHhhccchHhHHHHHHHHH--HHHHHHHHHHHHH
Confidence            455788999999999999999999999999887777533  3444555555554

However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].

>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]

Probab=99.97  E-value=5.7e-29  Score=261.66  Aligned_cols=240  Identities=17%  Similarity=0.257  Sum_probs=180.9

Q ss_pred             CcccccCCccCCChhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC---CCCchhHHHHHHHHHHHHHH
Q 008879           86 GFKRYSGGWNIKDRHYWASVAYTAAPLFVIAAIWFLGFGACLLFICIFHFCCKRKPY---GYSKTAYALSLIFLIFFTIA  162 (550)
Q Consensus        86 ~fk~Y~ggfni~n~hYwaSv~ftg~pg~iIAalwfi~fgl~lli~~~c~CCc~rk~~---~ysr~~~~~slillll~ti~  162 (550)
                      .|+.-++.|+++|+.|+||+++.|.    +|++++++.++++++|.+|+|||||+..   ...-+|..|++++..++|+ 
T Consensus        24 ~~~~tns~F~pe~~~Y~QaL~lla~----l~aa~l~l~Ll~ll~yli~~cC~Rr~~~~~~~~~~~c~s~~l~I~tl~cc-   98 (526)
T KOG4433|consen   24 KLHPTNSVFRPEDSEYQQALLLLAA----LAAACLGLSLLFLLFYLICRCCCRRETTGRKRRRVRCLSWSLIIATLMCC-   98 (526)
T ss_pred             eEeeccccCCCCcHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCcceeeehHHHHHHHHH-
Confidence            3456789999999999999999996    8888888889999999999999999733   3334789999766555555 


Q ss_pred             HHHHHhhhhccchhhccchhhhHHHHHhchHHHHHHHHH-HHHHHHhhhhcccccccc-CC---CccccHHHHHHHHHhh
Q 008879          163 AIIGCVVLYAGQVKFRGSTKKTLEYVVYQADTTVQKLQE-VSNNLATAKQISVQKVFL-PS---NVQSDIDNVESKLNSS  237 (550)
Q Consensus       163 aIaG~ivl~~Gn~~fh~~~~~tl~yvv~~an~tv~~l~n-Vt~~l~~~k~~~v~~~~l-P~---d~~~~id~~~~~Lns~  237 (550)
                        +|++++||||+++|+++.+ ..|..+++|+++.++++ |+++-+.+++ .+++... |.   ....++.++.+.++..
T Consensus        99 --a~igvg~ygN~e~~~G~~q-~~~Sl~~an~tv~ti~~qv~~~~~~l~~-~~~~~l~~~~~n~t~~~~l~~~l~~vq~~  174 (526)
T KOG4433|consen   99 --AAIGVGFYGNSETSDGLLQ-ATYSLRHANHTVSTIDAQVSDTAEGLNN-TAEQLLETLEENLTARPELLQALRRVQGN  174 (526)
T ss_pred             --HHHheeeecCccccchHHH-HHHhhhhhcchhhHHHHHHHHHHHHHHH-HHHHHhhhHHhhhhhHHHHHHHHHHHHHH
Confidence              8889999999999999999 67789999999999999 5666666654 2332222 22   2445577777777777


Q ss_pred             HHHHHHHhhh---------hhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHH
Q 008879          238 ASTVADETAK---------NSHDIRDLL---DSVRLALILIAAIMLVLTFLGFLFSI-FGMQVLVYVLVIFGWILVTGTF  304 (550)
Q Consensus       238 a~~i~~k~~~---------n~~~I~k~l---~~v~l~l~iva~vmllL~llglv~si-~g~r~lv~~lvilgwilv~~tW  304 (550)
                      ++.+..+.+.         ...++.+..   +.+||..+++...++++.++.+++++ .+.||+++.|.++|.+.++++|
T Consensus       175 ~~~a~~~l~~~~~~~~~~~sl~~l~~~~~~yE~~RW~~~v~lL~l~LvvC~v~vlglak~Skc~li~fsv~Gll~lvisW  254 (526)
T KOG4433|consen  175 AETAVGQLSGLPFWRMVAVSLEKLAEQVDFYESYRWLAYVLLLTLLLVVCLVLVLGLAKRSKCLLIVFSVCGLLALVISW  254 (526)
T ss_pred             HHHHHHhhhcCcccccCcccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHH
Confidence            7766655432         123333332   33566554443333333333333343 5789999999999999999999


Q ss_pred             HHHHHHHHHHhhcchhhhchhhhhhCCCCC
Q 008879          305 ILCGIFLLLHNVAGDTCVAMNEYVQNPAAH  334 (550)
Q Consensus       305 il~G~fl~l~~~vsDtCvAmdeyv~nP~~~  334 (550)
                      .+.|++++.+++++|||+++|+|+.|...+
T Consensus       255 l~~gl~la~sVa~sDFC~~Pd~y~~~~~~~  284 (526)
T KOG4433|consen  255 LSLGLELASSVALSDFCVDPDDYVLNMVEE  284 (526)
T ss_pred             HHHhhhHHHHhhhhhhccChHHHHHHhhhc
Confidence            999999999999999999999999987654

>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology

Probab=98.79  E-value=2.6e-06  Score=99.54  Aligned_cols=49  Identities=12%  Similarity=0.264  Sum_probs=36.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHhhhhccchhhccchhhhHHHHHhchHHH
Q 008879          144 YSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGSTKKTLEYVVYQADTT  195 (550)
Q Consensus       144 ysr~~~~~slillll~ti~aIaG~ivl~~Gn~~fh~~~~~tl~yvv~~an~t  195 (550)
                      |.|.++.+.   |++++++.++|.+++|++|+.++++++++.+.+-+..+|+
T Consensus       137 c~R~~l~~~---L~~~~~~il~g~i~aF~~n~~l~~~v~~~~~~~~~~~~Dl  185 (806)
T PF05478_consen  137 CRRGCLGIL---LLLLTLIILFGVICAFVANQQLSTGVDDTPNTVNSTLDDL  185 (806)
T ss_pred             cchHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            445555554   5677777789999999999999999998777655554444

Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane

>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]

Probab=97.37  E-value=0.0022  Score=73.55  Aligned_cols=65  Identities=15%  Similarity=0.157  Sum_probs=45.8

Q ss_pred             ccccccCCCchhHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhh
Q 008879          466 GPFLAELQDCTFVRETFNEIYRDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFWVIYGRERRYRIY  530 (550)
Q Consensus       466 ~P~l~~L~dC~fVrdtF~~I~~~~C~~L~~~~~~v~~gl~~lS~~~~l~~i~Wv~~~r~~~~r~~  530 (550)
                      -|..|++.+|+=+..+..+-+.--|.=...-.+--|.|++...+-+..++|+-+.-...-||+.-
T Consensus       757 ~e~~e~V~sCqPls~~l~~~~~~lC~~~iDPlN~fW~~il~c~~lliP~li~a~~l~~~y~rm~~  821 (865)
T KOG4331|consen  757 KEHLENVASCQPLSKILRENVVVLCGYIIDPLNLFWFCILFCTVLLIPSLIFAVKLPKLYRRMEN  821 (865)
T ss_pred             HHHHhhccccccHHHHHHhhhHhhhhhccCCccccchHHHHHHHHHHhHHHHHHHhhHhhhhhcc
Confidence            45566777776666666665555666666666778999999999999999987665555554433

>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels

Probab=96.86  E-value=0.14  Score=55.97  Aligned_cols=10  Identities=30%  Similarity=0.853  Sum_probs=4.2

Q ss_pred             hchhhhhhCC
Q 008879          322 VAMNEYVQNP  331 (550)
Q Consensus       322 vAmdeyv~nP  331 (550)
                      ++..||+-+|
T Consensus       264 v~~sDfC~~p  273 (418)
T cd07912         264 VALSDFCVDP  273 (418)
T ss_pred             HhhhhhhcCH
Confidence            4444444433

The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.

>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised

Probab=95.03  E-value=0.72  Score=50.33  Aligned_cols=177  Identities=13%  Similarity=0.111  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHhcccCC-CCCC---CCchhHHHHHHHHHHHHHHHHHHHhhhhccchhhccchh---hhHHHHHhchHH
Q 008879          122 GFGACLLFICIFHFCCKR-KPYG---YSKTAYALSLIFLIFFTIAAIIGCVVLYAGQVKFRGSTK---KTLEYVVYQADT  194 (550)
Q Consensus       122 ~fgl~lli~~~c~CCc~r-k~~~---ysr~~~~~slillll~ti~aIaG~ivl~~Gn~~fh~~~~---~tl~yvv~~an~  194 (550)
                      ++.++.++..||++..++ +++.   +.+.+..+..++......+.+-|..=.-.|-.++..++.   +++.-+-++.++
T Consensus        35 l~ll~yl~~~CC~r~~~~~~~~~~~~c~~~~~~ia~lvc~aaigvG~yGN~e~~~gv~~~~~s~~~~n~t~~~i~~~v~~  114 (406)
T PF04906_consen   35 LFLLIYLICRCCCRRPREEKSSRRCCCLTWSLVIATLVCCAAIGVGFYGNSETNDGVYQLIYSLRNANHTLSGIDNLVSD  114 (406)
T ss_pred             HHHHHHHHHHhhCCCCCccccccCCcchHHHHHHHHHHHHHHHHcccccchhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566665556555544 3322   555555554444444444455555555666666655444   444445566666


Q ss_pred             HHHHHHH-HHHHHHhhhhccccccccCCCccccHHHHHHHHHh---hHHHHH---------HHhhhhhHHHHHHHHHHHH
Q 008879          195 TVQKLQE-VSNNLATAKQISVQKVFLPSNVQSDIDNVESKLNS---SASTVA---------DETAKNSHDIRDLLDSVRL  261 (550)
Q Consensus       195 tv~~l~n-Vt~~l~~~k~~~v~~~~lP~d~~~~id~~~~~Lns---~a~~i~---------~k~~~n~~~I~k~l~~v~l  261 (550)
                      +.+++.. +...++..+++    +..|.|....+.++++.+++   ++++|.         +++.+..+.++.+....++
T Consensus       115 ~~~~l~~~v~~~l~~Le~~----~~~~~~~~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~l~~~~~~~~~~E~yRw~~~~  190 (406)
T PF04906_consen  115 TTEALNSTVEQHLTRLEEI----FAKRTDLLQALQFLQQQAENVVQQLDELPFWRNVSLSLEQLAEQVSFYEYYRWLAYL  190 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHH----hcccccHHHHHHHHHHHHHHHHHHHhcCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            6666654 55555555432    23344433333333332222   222221         2344556677777777889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHH
Q 008879          262 ALILIAAIMLVLTFLGFLFSI----FGMQVLVYVLVIFGWILVTG  302 (550)
Q Consensus       262 ~l~iva~vmllL~llglv~si----~g~r~lv~~lvilgwilv~~  302 (550)
                      .++++..+.+++.++|++--.    ...-.+-.+.+++.|++..+
T Consensus       191 ~lL~l~l~icl~~l~glar~Sk~~li~~~v~gll~lvisW~~~g~  235 (406)
T PF04906_consen  191 GLLILDLVICLLGLLGLARQSKCLLIVFSVLGLLALVISWISLGL  235 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcceEEEeeeccHHHHHHHHHHHHH
Confidence            998999999999999976522    12223334566678887644

However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].

>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]

Probab=95.01  E-value=1.2  Score=49.19  Aligned_cols=49  Identities=27%  Similarity=0.351  Sum_probs=32.7

Q ss_pred             ccccCCCchhHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008879          468 FLAELQDCTFVRETFNEIYRDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFW  518 (550)
Q Consensus       468 ~l~~L~dC~fVrdtF~~I~~~~C~~L~~~~~~v~~gl~~lS~~~~l~~i~W  518 (550)
                      .|..+.||--+.+-|.+--.+-|-+=-.+.  ++..++.+=.|+++++++|
T Consensus       357 qLtAlvdCr~lH~dy~~AlrGlC~~gl~GL--~~lml~s~L~a~~lsilv~  405 (526)
T KOG4433|consen  357 QLTALVDCRSLHKDYVAALRGLCYDGLEGL--LYLMLFSFLTALALSILVC  405 (526)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHHHHHHHHHh
Confidence            356789999999999999889997654443  3333333344556666653

>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology

Probab=92.95  E-value=2  Score=50.99  Aligned_cols=53  Identities=15%  Similarity=0.278  Sum_probs=42.2

Q ss_pred             ccCCCchhHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008879          470 AELQDCTFVRETFNEIYRDHCPDLQAYSKWIYVGLAMVSTAVMLSLIFWVIYG  522 (550)
Q Consensus       470 ~~L~dC~fVrdtF~~I~~~~C~~L~~~~~~v~~gl~~lS~~~~l~~i~Wv~~~  522 (550)
                      ++...|.=+.+++...+.--|.-+-..++-.|.|++.-+.-+++++||-+.-+
T Consensus       740 ~~vg~C~Pl~~~~d~~~~~~C~~ivdp~N~fWf~l~~c~~~liP~ii~avkL~  792 (806)
T PF05478_consen  740 NDVGRCQPLANIYDSAVVILCSRIVDPINGFWFGLGWCTLFLIPSIIFAVKLA  792 (806)
T ss_pred             ccCcCCccHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666888888888888778888888899999999998888888888755433

Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=83.45  E-value=3.8  Score=34.79  Aligned_cols=18  Identities=11%  Similarity=0.320  Sum_probs=8.8

Q ss_pred             HHHHHHHHHhhHHHHHHH
Q 008879          227 IDNVESKLNSSASTVADE  244 (550)
Q Consensus       227 id~~~~~Lns~a~~i~~k  244 (550)
                      |+.-.++|...|....++
T Consensus        36 L~~kt~~L~~~a~~F~k~   53 (89)
T PF00957_consen   36 LEDKTEELSDNAKQFKKN   53 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHH
Confidence            333345555555554444

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	550
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 63/438 (14%), Positives = 129/438 (29%), Gaps = 114/438 (26%)

Query: 181 TKKTLEYVVYQADTTVQKLQEVSNNLATAKQISVQKVFLPSNVQSDIDNVESKLNSSAST 240
           +K+ +++++  +   V     +   L + KQ  + + F+   ++ +   + S + +    
Sbjct: 47  SKEEIDHII-MSKDAVSGTLRLFWTLLS-KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104

Query: 241 VADETAKNSHDIRDLL---------DSV-RLALIL-IAAIMLVLTFLGFLFSIFGM---- 285
            +  T +   + RD L          +V RL   L +   +L L     +  I G+    
Sbjct: 105 PSMMT-RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL-IDGVLGSG 162

Query: 286 -QVLVYVLV------------IFGWILV----TGTFILCGIFLLLHNVAGDTCVAMNEYV 328
              +   +             IF W+ +    +   +L  +  LL+ +  +   + +++ 
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWT-SRSDHS 220

Query: 329 QNPAAHTALDSIIPCVDKATAQDTLTRTKEVTSQLV-------EVVNE--------VIT- 372
            N      + SI     +A  +  L         LV       +  N         + T 
Sbjct: 221 SNIKLR--IHSI-----QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273

Query: 373 NVSNINFAPAFVPFYFNQSGPLVPILCNPFHPDFTDRTCTAGELNLNNATQALSNYVCQV 432
                +F  A    +      L         PD            L+   Q L   V   
Sbjct: 274 FKQVTDFLSAATTTHI----SLDHHS-MTLTPDEVKSLL---LKYLDCRPQDLPREVLTT 325

Query: 433 SPSGVC----------TTTGRLTPPLYDDMTAAVNLCNGLENYGPFLAELQDCTFVRETF 482
           +P  +            T         D +T  +     L    P  AE +        F
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--LNVLEP--AEYRKM------F 375

Query: 483 NE--IYRD--HCPD--LQAYSKWI----YVGLAMVSTAVMLSLIFWVIYGRERRYRIYTK 532
           +   ++    H P   L     W        + +V+     SL+      +E    I + 
Sbjct: 376 DRLSVFPPSAHIPTILLSLI--WFDVIKSDVMVVVNKLHKYSLVE--KQPKESTISIPSI 431

Query: 533 QSD-----------HQSL 539
             +           H+S+
Sbjct: 432 YLELKVKLENEYALHRSI 449

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00