Citrus Sinensis ID: 009011
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 546 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LUJ4 | 562 | Pentatricopeptide repeat- | yes | no | 0.972 | 0.944 | 0.540 | 1e-153 | |
| Q9M8W9 | 508 | Pentatricopeptide repeat- | no | no | 0.763 | 0.820 | 0.395 | 8e-85 | |
| Q9FVX2 | 517 | Pentatricopeptide repeat- | no | no | 0.807 | 0.852 | 0.299 | 9e-61 | |
| Q9SSR6 | 523 | Pentatricopeptide repeat- | no | no | 0.804 | 0.839 | 0.314 | 9e-61 | |
| P0C8A0 | 638 | Pentatricopeptide repeat- | no | no | 0.787 | 0.673 | 0.302 | 1e-60 | |
| Q9FH87 | 637 | Putative pentatricopeptid | no | no | 0.800 | 0.686 | 0.295 | 2e-57 | |
| Q9C9A2 | 510 | Pentatricopeptide repeat- | no | no | 0.793 | 0.849 | 0.297 | 5e-56 | |
| Q9LFQ4 | 572 | Pentatricopeptide repeat- | no | no | 0.835 | 0.797 | 0.294 | 9e-55 | |
| Q0WP85 | 509 | Pentatricopeptide repeat- | no | no | 0.772 | 0.829 | 0.291 | 1e-52 | |
| Q9LZP3 | 599 | Pentatricopeptide repeat- | no | no | 0.787 | 0.717 | 0.264 | 4e-48 |
| >sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 541 bits (1393), Expect = e-153, Method: Compositional matrix adjust.
Identities = 299/553 (54%), Positives = 379/553 (68%), Gaps = 22/553 (3%)
Query: 1 MLPKHNILKLLSQSHLQKHAKIYYLCYLSCNPLCTTAESP-SSTESPSLPSWIKFFDSQS 59
ML K I KL+S + ++ I+ +L N T ESP + ESP LPSWIK F S
Sbjct: 1 MLTKLRISKLVSYTLPRR---IFQRRFLVTNN--TAEESPIVAAESPELPSWIKDFLSNK 55
Query: 60 P----------DEDFVIPSLAGWVESHRLNEKSRISSRVLSENHETDVDKISKILSKQYQ 109
P DEDFVIPSLA WVES + + + V+ + E D+DK+ L+K+
Sbjct: 56 PSSSSSSVSKDDEDFVIPSLANWVESQKFSRQQVSEGNVVKKPVE-DIDKVCDFLNKKDT 114
Query: 110 SPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVD 169
S + VV+ L C V V+ SLV Q LRRFSN A+GFF WA +QTGY+H+ YN MVD
Sbjct: 115 SHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANSQTGYVHSGHTYNAMVD 174
Query: 170 VLGKSKKFCLMWELVKEMDELNNG-YVSLATMSTIMRRLVRGGRYDDAVEAFRGMKK-YG 227
VLGK + F LMWELV EM++ V+L TMS +MRRL + G+Y+ AV+AF M+K YG
Sbjct: 175 VLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYNKAVDAFLEMEKSYG 234
Query: 228 VEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQK 287
V+ DT A++ LMD LVK NS+EHA++VFL+ D I ++ FNILIHG+CK RK DDA+
Sbjct: 235 VKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPDARTFNILIHGFCKARKFDDARA 294
Query: 288 AMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALG 347
M M F+PDVV+YT F+E YC+E DFR+V++ L+EM+E GC P+V+TYTIVMH+LG
Sbjct: 295 MMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYTIVMHSLG 354
Query: 348 KAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVL 407
K+KQ+ EAL VYEKMK D C+PD FYSSLI ILSK GR KDA EIFEDM QGV +VL
Sbjct: 355 KSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQGVRRDVL 414
Query: 408 TYNTMISSACARSEEENALKLLQKMEE---DLCKPDCETYAPLLKMCCRKKRMKVLNFLL 464
YNTMIS+A S +E AL+LL++ME+ + C P+ ETYAPLLKMCC KK+MK+L LL
Sbjct: 415 VYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYAPLLKMCCHKKKMKLLGILL 474
Query: 465 THMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKK 524
HM KNDVS+D TY L+RGL SGK+E AC FFEE + KG+VP ST KML ++LEKK
Sbjct: 475 HHMVKNDVSIDVSTYILLIRGLCMSGKVEEACLFFEEAVRKGMVPRDSTCKMLVDELEKK 534
Query: 525 RLGNAKERINKLL 537
+ AK +I L+
Sbjct: 535 NMAEAKLKIQSLV 547
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M8W9|PP211_ARATH Pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 315 bits (806), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 167/422 (39%), Positives = 257/422 (60%), Gaps = 5/422 (1%)
Query: 123 VSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWE 182
V++S+ LV + L RF +D A G WA++ G+ H+ + Y+ VD+LGK+KK+ M E
Sbjct: 83 VNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKE 142
Query: 183 LVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTL 242
V+ M + V+L T++ IMRR G +++AV F + ++G+EK+T ++++L+DTL
Sbjct: 143 FVERMR--GDKLVTLNTVAKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLDTL 200
Query: 243 VKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVV 302
K VE A V L+ K I ++ FNI IHGWCK +V++A ++EM GF P V+
Sbjct: 201 CKEKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVI 260
Query: 303 SYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKM 362
SYT I YC++ +F KV + L EM+ G P+ ITYT +M +L K+ EAL+V +M
Sbjct: 261 SYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRM 320
Query: 363 KSDDCLPDTSFYSSLIFILSKAGRVKDANEIFE-DMKKQGVVPNVLTYNTMISSACARSE 421
K C PD+ FY+ LI L++AGR+++A +F +M + GV N TYN+MI+ C E
Sbjct: 321 KRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDE 380
Query: 422 EENALKLLQKME-EDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMF-KNDVSMDAGTY 479
E+ A++LL++ME +LC PD TY PLL+ C ++ + + LL M K+ +S+D TY
Sbjct: 381 EDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDESTY 440
Query: 480 ASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAH 539
L++ L + E A FEEMIS+ I P H T +L E+++KK + + ERI ++
Sbjct: 441 TFLIQRLCRANMCEWAYCLFEEMISQDITPRHRTCLLLLEEVKKKNMHESAERIEHIMKT 500
Query: 540 AK 541
K
Sbjct: 501 VK 502
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 234 bits (598), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 134/447 (29%), Positives = 236/447 (52%), Gaps = 6/447 (1%)
Query: 81 KSRISSRVLSENHET-DVDKISKILSKQYQSPDKVV--EALKGCGVSVSNSLVEQTLRRF 137
KS +S+R+ S + + DV ++K +SK S ++V AL G+ VS +VE L RF
Sbjct: 51 KSFLSARLYSSSEQVRDVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRF 110
Query: 138 SNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSL 197
N + FF W++ Q Y H+ Y+ M++ K +++ LMW+L+ M + +++
Sbjct: 111 RNAGLLTYRFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRK--KKMLNV 168
Query: 198 ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLE 257
T +MR+ R + D+A+ AF M+KY + + A + L+ L K +V A +VF
Sbjct: 169 ETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFEN 228
Query: 258 FKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDF 317
+D S+ ++IL+ GW K + A++ +EM G PD+V+Y+ ++ C+
Sbjct: 229 MRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRV 288
Query: 318 RKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSL 377
+ ++ M CKP+ Y++++H G ++ EA+ + +M+ D + ++SL
Sbjct: 289 DEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSL 348
Query: 378 IFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLC 437
I KA R+K+ + ++MK +GV PN + N ++ R E++ A + +KM + +C
Sbjct: 349 IGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIK-VC 407
Query: 438 KPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACS 497
+PD +TY ++KM C KK M+ + + +M K V T++ L+ GL E + AC
Sbjct: 408 EPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACV 467
Query: 498 FFEEMISKGIVPYHSTYKMLEEKLEKK 524
EEMI GI P T+ L + L K+
Sbjct: 468 LLEEMIEMGIRPSGVTFGRLRQLLIKE 494
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (598), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 139/442 (31%), Positives = 225/442 (50%), Gaps = 3/442 (0%)
Query: 83 RISSRVLSENHETD-VDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDL 141
RI S +L + D V++IS++LS D + L VS++LVEQ L+R N
Sbjct: 23 RIFSTLLHDPPSPDLVNEISRVLSDHRNPKDDLEHTLVAYSPRVSSNLVEQVLKRCKNLG 82
Query: 142 TPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMS 201
PA FF WA+ + H+ E Y+ +V++LG SK+F L+W+ + E E N +S
Sbjct: 83 FPAHRFFLWARRIPDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFW 142
Query: 202 TIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD- 260
+ R R +A AF M ++G++ L L+ +L V HA + F + K
Sbjct: 143 IVFRAYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGF 202
Query: 261 CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKV 320
I S++ ++IL+ GW + R A+K EM ++ D+++Y ++ C+ D
Sbjct: 203 GIVPSAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGG 262
Query: 321 DDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFI 380
+EM G KP ++ I +HA A ++ A KV ++MK D +P+ ++ +I
Sbjct: 263 YKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKT 322
Query: 381 LSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPD 440
L K +V DA + ++M ++G P+ TYN++++ C E A KLL +M+ C PD
Sbjct: 323 LCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPD 382
Query: 441 CETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLI-ESGKLELACSFF 499
TY +LK+ R R + M + TY ++ GL+ + GKLE AC +F
Sbjct: 383 RHTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYF 442
Query: 500 EEMISKGIVPYHSTYKMLEEKL 521
E MI +GI PY +T +ML +L
Sbjct: 443 EMMIDEGIPPYSTTVEMLRNRL 464
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (597), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/437 (30%), Positives = 229/437 (52%), Gaps = 7/437 (1%)
Query: 88 VLSENHE----TDVDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTP 143
V E HE +V+KI +IL + K+ AL G+ + L+ + L R +
Sbjct: 54 VCPEKHEDEFAGEVEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCGDAGNL 113
Query: 144 AFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTI 203
+ FF WA Q GY H+ E+ +MV +L K ++F +W L++EM + N + +
Sbjct: 114 GYRFFLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVL 173
Query: 204 MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIP 263
MRR AVE M KYG+E D L+D L K SV+ A KVF + ++ P
Sbjct: 174 MRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFP 233
Query: 264 LSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDT 323
+ + F L++GWC+ K+ +A++ + +M + G PD+V +T + Y D
Sbjct: 234 PNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDL 293
Query: 324 LKEMQEKGCKPSVITYTIVMHALGKA-KQINEALKVYEKMKSDDCLPDTSFYSSLIFILS 382
+ +M+++G +P+V YT+++ AL + K+++EA++V+ +M+ C D Y++LI
Sbjct: 294 MNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFC 353
Query: 383 KAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCE 442
K G + + +DM+K+GV+P+ +TY ++ + + + E L+L++KM+ C PD
Sbjct: 354 KWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLL 413
Query: 443 TYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEM 502
Y ++++ C+ +K L M N +S T+ ++ G G L AC+ F+EM
Sbjct: 414 IYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEM 473
Query: 503 ISKGI--VPYHSTYKML 517
+S+GI P + T K L
Sbjct: 474 VSRGIFSAPQYGTLKSL 490
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (570), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/440 (29%), Positives = 231/440 (52%), Gaps = 3/440 (0%)
Query: 95 TDVDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQ 154
+DV+K +IL K + K+ AL GV + L+E+ L R + + FF WA Q
Sbjct: 81 SDVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQ 140
Query: 155 TGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYD 214
Y H+ E+Y +MV +L K ++F +W L++EM + N + +++R
Sbjct: 141 PRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVK 200
Query: 215 DAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIH 274
A+E M K+G E D L+D L K SV+ A K+F + + P++ + F L++
Sbjct: 201 KAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYFTSLLY 260
Query: 275 GWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKP 334
GWC+ K+ +A+ + +M + GF PD+V YT + Y D L++M+ +G +P
Sbjct: 261 GWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEP 320
Query: 335 SVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIF 394
+ YT+++ AL K ++ EA+KV+ +M+ +C D Y++L+ K G++ +
Sbjct: 321 NANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVL 380
Query: 395 EDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRK 454
+DM K+G++P+ LTY ++ + + E L+L++KM + PD Y ++++ C+
Sbjct: 381 DDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKL 440
Query: 455 KRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGI--VPYHS 512
+K L M +N +S T+ ++ GL G L A F+EM+++G+ V +
Sbjct: 441 GEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGLFSVSQYG 500
Query: 513 TYK-MLEEKLEKKRLGNAKE 531
T K +L L+ K+L AK+
Sbjct: 501 TLKLLLNTVLKDKKLEMAKD 520
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (557), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 131/441 (29%), Positives = 230/441 (52%), Gaps = 8/441 (1%)
Query: 82 SRISSRVLSENHETDVDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDL 141
S + ++V + + D ++I KIL+K S KV L V +S +L+E+ L++ SN
Sbjct: 51 SSVETQVSANDASQDAERICKILTKFTDS--KVETLLNEASVKLSPALIEEVLKKLSNAG 108
Query: 142 TPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMS 201
A F WA+ Q G+ HT YN +++ LGK K+F L+W LV +M +S T +
Sbjct: 109 VLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKA--KKLLSKETFA 166
Query: 202 TIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF-KD 260
I RR R + +A+ AF M+++G + ++ + ++DTL K +V A KVF + K
Sbjct: 167 LISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKK 226
Query: 261 CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKV 320
+ + IL+ GW + + + +EM +GF PDVV+Y I +C+ K + +
Sbjct: 227 RFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEA 286
Query: 321 DDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFI 380
EM+++ CKPS + +++ LG K++N+AL+ +E+ KS + Y++L+
Sbjct: 287 IRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGA 346
Query: 381 LSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPD 440
+ R++DA + ++M+ +GV PN TY+ ++ + A ++ Q M C+P
Sbjct: 347 YCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMS---CEPT 403
Query: 441 CETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFE 500
TY +++M C K+R+ + + M V ++SL+ L KL+ AC +F
Sbjct: 404 VSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFN 463
Query: 501 EMISKGIVPYHSTYKMLEEKL 521
EM+ GI P + L++ L
Sbjct: 464 EMLDVGIRPPGHMFSRLKQTL 484
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFQ4|PP383_ARATH Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 215 bits (547), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 139/472 (29%), Positives = 241/472 (51%), Gaps = 16/472 (3%)
Query: 84 ISSRVLSENHETDVDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTP 143
IS ++SE DV KISK++ ++ L+ C V SN LV + L R ND
Sbjct: 88 ISDELVSE----DVGKISKLVKDCGSDRKELRNKLEECDVKPSNELVVEILSRVRNDWET 143
Query: 144 AFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTI 203
AF FF WA Q GY+ + Y++M+ +LGK +KF W L+ EM + + V+ T+ +
Sbjct: 144 AFTFFVWAGKQQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIM 203
Query: 204 MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIP 263
+R+ A+ F K++ +E L+ L + +V A + KD P
Sbjct: 204 IRKYCAVHDVGKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYP 263
Query: 264 LSSQIFNILIHGWCKT-RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDD 322
++ FNI+++GWC +A++ EM G DVVSY+ I Y + KV
Sbjct: 264 FDAKSFNIVLNGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLK 323
Query: 323 TLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCL-PDTSFYSSLIFIL 381
M+++ +P Y V+HAL KA ++EA + + M+ + + P+ Y+SLI L
Sbjct: 324 LFDRMKKECIEPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPL 383
Query: 382 SKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDC 441
KA + ++A ++F++M ++G+ P + TY+ + R+ EE +LL KM + C+P
Sbjct: 384 CKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMR--ILRTGEE-VFELLAKMRKMGCEPTV 440
Query: 442 ETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEE 501
ETY L++ CR + + L M + V D +Y ++ GL +GK+E A +++E
Sbjct: 441 ETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKE 500
Query: 502 MISKGIVPYHSTYKMLE-----EKLEKKRLGNAKERINK--LLAHAKEQKTF 546
M KG+ P + M++ ++ ++R+ ++K +NK ++ ++ +K F
Sbjct: 501 MKDKGMRPNENVEDMIQSWFSGKQYAEQRITDSKGEVNKGAIVKKSEREKNF 552
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WP85|PP150_ARATH Pentatricopeptide repeat-containing protein At2g13420, mitochondrial OS=Arabidopsis thaliana GN=At2g13420 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (528), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 128/439 (29%), Positives = 224/439 (51%), Gaps = 17/439 (3%)
Query: 95 TDVDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQ 154
+D + IS++L + + +L+ G+S++ +L+ QTL R ++ A FF + ++
Sbjct: 39 SDAELISQMLITNHNPFHFMESSLQLNGISLTPNLIHQTLLRLRHNSKIALSFFQYLRSL 98
Query: 155 TGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYD 214
TP +N ++D+LG+ ++F ++ +L+ EMD+ S T +++RL+ G
Sbjct: 99 PSPSTTPTSFNLIIDILGRVRQFDVVRQLIVEMDQ-----TSPETFLILVKRLIAAGLTR 153
Query: 215 DAVEAFRGMKKYGVEKDTRAL--SVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNIL 272
AV AF + + R + L+DTL K + A VF E K+ +++ IL
Sbjct: 154 QAVRAFDDAPCFLENRRFRLVEFGFLLDTLCKYGYTKMAVGVFNERKEEFGSDEKVYTIL 213
Query: 273 IHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR----------EKDFRKVDD 322
I GWCK R++D A+K + EM + G P+VV+Y + CR E++ R +
Sbjct: 214 IAGWCKLRRIDMAEKFLVEMIESGIEPNVVTYNVLLNGICRTASLHPEERFERNVRNAEK 273
Query: 323 TLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILS 382
EM+++G +P V +++IV+H +A + L + MK+ P Y+S++ L
Sbjct: 274 VFDEMRQRGIEPDVTSFSIVLHMYSRAHKAELTLDKMKLMKAKGISPTIETYTSVVKCLC 333
Query: 383 KAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCE 442
GR+++A E+ E M + G+ P+ TYN R + A+ L +KM+ LCKP +
Sbjct: 334 SCGRLEEAEELLETMVESGISPSSATYNCFFKEYKGRKDANGAMNLYRKMKNGLCKPSTQ 393
Query: 443 TYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEM 502
TY LL +M+ + + + ++ D +Y SLV GL K + AC +F EM
Sbjct: 394 TYNVLLGTFINLGKMETVKEIWDDLKASETGPDLDSYTSLVHGLCSKEKWKEACGYFVEM 453
Query: 503 ISKGIVPYHSTYKMLEEKL 521
I +G +P T++ L + L
Sbjct: 454 IERGFLPQKLTFETLYKGL 472
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (489), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 116/438 (26%), Positives = 217/438 (49%), Gaps = 8/438 (1%)
Query: 73 VESHRLNEKSRISSRVLSENHETDVDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQ 132
VES N++ S V S + +V+++ K++ + + + L + +S+ L+ +
Sbjct: 107 VESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVE 166
Query: 133 TLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNN 192
L RF + PAF FF WA + G+ H YN+M+ +L K+++F M +++EM
Sbjct: 167 VLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMG--TK 224
Query: 193 GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAY 252
G +++ T + M+ AV F MKKY + ++ L+D+L + + A
Sbjct: 225 GLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQ 284
Query: 253 KVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYC 312
+F + K+ + + +L++GWC+ R + +A + +M QG PD+V++ +E
Sbjct: 285 VLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLL 344
Query: 313 REKDFRKVDDTLK---EMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLP 369
R RK D +K M+ KG P+V +YTI++ K + A++ ++ M P
Sbjct: 345 RS---RKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQP 401
Query: 370 DTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLL 429
D + Y+ LI ++ E+ ++M+++G P+ TYN +I + E+A ++
Sbjct: 402 DAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIY 461
Query: 430 QKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIES 489
KM ++ +P T+ ++K + ++ + M K + D +Y L+RGLI
Sbjct: 462 NKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGE 521
Query: 490 GKLELACSFFEEMISKGI 507
GK AC + EEM+ KG+
Sbjct: 522 GKSREACRYLEEMLDKGM 539
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 546 | ||||||
| 225432738 | 535 | PREDICTED: pentatricopeptide repeat-cont | 0.948 | 0.968 | 0.633 | 0.0 | |
| 255552099 | 549 | pentatricopeptide repeat-containing prot | 0.935 | 0.930 | 0.625 | 0.0 | |
| 449442128 | 591 | PREDICTED: pentatricopeptide repeat-cont | 0.945 | 0.873 | 0.598 | 1e-179 | |
| 449505568 | 614 | PREDICTED: pentatricopeptide repeat-cont | 0.945 | 0.840 | 0.598 | 1e-178 | |
| 224107985 | 497 | predicted protein [Populus trichocarpa] | 0.902 | 0.991 | 0.580 | 1e-167 | |
| 357480939 | 596 | Pentatricopeptide repeat-containing prot | 0.978 | 0.895 | 0.556 | 1e-159 | |
| 356540343 | 543 | PREDICTED: pentatricopeptide repeat-cont | 0.913 | 0.918 | 0.560 | 1e-157 | |
| 356495784 | 558 | PREDICTED: pentatricopeptide repeat-cont | 0.923 | 0.903 | 0.556 | 1e-157 | |
| 15228825 | 562 | pentatricopeptide repeat-containing prot | 0.972 | 0.944 | 0.540 | 1e-151 | |
| 224107981 | 555 | predicted protein [Populus trichocarpa] | 0.978 | 0.962 | 0.508 | 1e-147 |
| >gi|225432738|ref|XP_002279088.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670, mitochondrial [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/524 (63%), Positives = 413/524 (78%), Gaps = 6/524 (1%)
Query: 25 LCYLSCNPLCTTAESPSSTESPSLPSWIKFFDSQSP-----DEDFVIPSLAGWVESHRLN 79
L YLS NP CTT SP++ ESP LP W+KF + +P D+DFVIP LA W E+ + +
Sbjct: 12 LHYLSLNPFCTTTGSPTTAESPELPDWVKFSQNNNPAGSDSDDDFVIPKLAYWAENQKHD 71
Query: 80 EKSRISSRVLSENHETDVDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSN 139
+S++ VL E ++D+DKIS++L ++ S D VV+AL GCGVSVS SLVEQ L+RFSN
Sbjct: 72 HRSKVDGYVLKETIDSDIDKISELLKFRHSSADAVVQALGGCGVSVSESLVEQVLKRFSN 131
Query: 140 DLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLAT 199
D PAFGFF WAK QTGY H+ YN+MVD+LGK KKF LMWELV+EMD L GYVSLAT
Sbjct: 132 DWIPAFGFFKWAKAQTGYRHSMNSYNSMVDILGKLKKFDLMWELVEEMDRLG-GYVSLAT 190
Query: 200 MSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFK 259
M+ +MRRL R R+ DA+EAFRGM+++GV+KDT A++ LMD LVK NSVEHA VF+EFK
Sbjct: 191 MTKVMRRLARASRWKDAIEAFRGMERFGVKKDTLAMNTLMDALVKENSVEHANDVFVEFK 250
Query: 260 DCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRK 319
D I L+ FN+LIHGWCK RK+D+A K+M EM + GF PDV+SYT +E YCREKDFRK
Sbjct: 251 DSILLNPHTFNVLIHGWCKARKMDNALKSMAEMKEHGFCPDVISYTSIVEAYCREKDFRK 310
Query: 320 VDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIF 379
V+ L EM+EKGC P+V+TYTIVMHALGK K+I++AL+VYEKMK C+PDTSFYSSLI+
Sbjct: 311 VNSVLNEMEEKGCPPNVVTYTIVMHALGKGKEISKALEVYEKMKGSSCVPDTSFYSSLIY 370
Query: 380 ILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKP 439
ILSKAGR+KDA ++FEDM KQG +P+VLTYNTMIS+AC S+EE+ALKLL KMEE CKP
Sbjct: 371 ILSKAGRLKDARDVFEDMTKQGAIPDVLTYNTMISAACMHSQEEDALKLLLKMEESSCKP 430
Query: 440 DCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFF 499
D TY+PLLKMCCR RMKVL+ LL HMFKND+S++ GTY+ LV GL +SGKLE AC FF
Sbjct: 431 DLNTYSPLLKMCCRNNRMKVLSALLNHMFKNDISLEVGTYSLLVHGLCKSGKLEHACLFF 490
Query: 500 EEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKEQ 543
EEM+SKG+VP T+K+L ++LEKK + AKER+ KL++ A++Q
Sbjct: 491 EEMVSKGLVPKDCTHKLLLKELEKKSMVEAKERVEKLMSQARQQ 534
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255552099|ref|XP_002517094.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223543729|gb|EEF45257.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/515 (62%), Positives = 396/515 (76%), Gaps = 4/515 (0%)
Query: 32 PLCT--TAESPSSTESPSLPSWIKFFD-SQSPDEDFVIPSLAGWVESHRLNEKSRISSRV 88
PL T +A+SP S ESP LP+W+ + PD DFVIPSLA WVE H L + + + +
Sbjct: 33 PLTTPHSADSPDSPESPDLPTWLHSNKKPEFPDGDFVIPSLADWVEHHNLGDIKEVGNHL 92
Query: 89 LSENHETDVDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTPAFGFF 148
L +D+D++S+IL K Y D VV+AL CGV+ +N+L+ Q L RF ND PA G F
Sbjct: 93 LFHAQVSDIDRVSEILKKHYPCTDSVVQALNDCGVNPTNNLISQLLNRFCNDWVPALGLF 152
Query: 149 TWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLV 208
TWAK QTGY+H P++Y+ MVD+LG+ KKF MWELVKEM+ L GYVSL TM +MRRL
Sbjct: 153 TWAKHQTGYVHPPDLYDLMVDILGRRKKFSFMWELVKEMENLE-GYVSLVTMKKVMRRLA 211
Query: 209 RGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQI 268
R G + DAVEAFRG++K GV KD AL+VLMD LVK SVEHAY F+EFKD I + Q
Sbjct: 212 RAGNFQDAVEAFRGIEKLGVRKDIEALNVLMDALVKEGSVEHAYSAFMEFKDSIHVDFQS 271
Query: 269 FNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQ 328
FNIL+HG+CK RK+DDA+K M EM +QGF P+VVSYTCFIE YC+ KDFR V+ EMQ
Sbjct: 272 FNILLHGYCKARKLDDARKIMDEMDKQGFQPNVVSYTCFIELYCKLKDFRNVEAIFSEMQ 331
Query: 329 EKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVK 388
EK CKP+VITYTI MHALGKAKQ+N+AL+VYE MKS+ C+PD SFYSSLIF+L+++GR+K
Sbjct: 332 EKSCKPNVITYTIFMHALGKAKQVNKALEVYEMMKSNCCVPDASFYSSLIFVLTQSGRLK 391
Query: 389 DANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLL 448
DA ++FEDMKKQGV P++LTYNTMI+SAC EEENALKLL++MEED CKPD +TYAPLL
Sbjct: 392 DAWDVFEDMKKQGVSPDLLTYNTMITSACTHLEEENALKLLRRMEEDSCKPDIQTYAPLL 451
Query: 449 KMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIV 508
KMCCRKKR+KVL FLL HMFKN++S+D GTY LV GL +SGKLELACSFFEEM+ KG++
Sbjct: 452 KMCCRKKRIKVLKFLLNHMFKNNISIDLGTYVLLVGGLCKSGKLELACSFFEEMVMKGLI 511
Query: 509 PYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKEQ 543
P TYKML E+LE+ L AKE+I KL+ ++Q
Sbjct: 512 PRDRTYKMLVEELEQNNLTEAKEKIQKLMFQTEDQ 546
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442128|ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust.
Identities = 313/523 (59%), Positives = 383/523 (73%), Gaps = 7/523 (1%)
Query: 29 SCNPLCTTAESPSSTESPSLPSWIKFFDS------QSPDEDFVIPSLAGWVESHRLNEKS 82
S PLCT S +ESP LP WIKFFD+ +S D+ FVIP LA W+ES +L + +
Sbjct: 69 SPKPLCTITGSTEVSESPDLPDWIKFFDTKTSTHLESEDDVFVIPPLAHWLESQKLEDNN 128
Query: 83 RISSRVLSENHETDVDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLT 142
++ + L E +VDKIS +L +Y SP+ V EAL G VSN+LV Q L+RF ND
Sbjct: 129 KVVQKKLGETCNNEVDKISTMLENRYPSPENVAEALNGKAYRVSNTLVAQLLKRFHNDWI 188
Query: 143 PAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMST 202
A+G F WAK Q Y H+PE YN+MVD+LGK+K F LMWELV EM+ L G VSL TMS
Sbjct: 189 QAYGIFKWAKDQIPYRHSPESYNSMVDILGKAKNFRLMWELVDEMNHLA-GSVSLETMSK 247
Query: 203 IMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCI 262
++RRL R GR+ +A+ AFR ++KYG+ DT A++VLMD LVK SVE A+ VF E K I
Sbjct: 248 VIRRLARAGRHQEAIHAFRNIEKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSI 307
Query: 263 PLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDD 322
P + FN+LIHG+CK +K+D+A K M E+ + G PDV+SYT FIE +CREKDFR VD
Sbjct: 308 PFNLASFNVLIHGYCKAKKLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDK 367
Query: 323 TLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILS 382
L +M+ KGCKP+VIT+TI+MHALGKAKQINEALKVYEKMK + C+PD+SFYSSLIFIL
Sbjct: 368 VLVQMEHKGCKPNVITFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILG 427
Query: 383 KAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCE 442
KAGR+ D EI EDM+KQGV P+VLTYNT+IS ACA S+EE AL LL KMEE CKPD +
Sbjct: 428 KAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISCACAHSQEETALTLLLKMEEVSCKPDLK 487
Query: 443 TYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEM 502
TY PLLKM CRKKRMKVL FLL HMFKNDVS++AGTYA LVRGL E+GKL LACSFF EM
Sbjct: 488 TYHPLLKMFCRKKRMKVLKFLLDHMFKNDVSIEAGTYAILVRGLCENGKLHLACSFFGEM 547
Query: 503 ISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKEQKT 545
+SK +VP ST+KML+E+LE+K + + I L+ A Q T
Sbjct: 548 LSKAMVPKDSTFKMLKEELERKSMLEEMKIIENLMFCATNQDT 590
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449505568|ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust.
Identities = 313/523 (59%), Positives = 383/523 (73%), Gaps = 7/523 (1%)
Query: 29 SCNPLCTTAESPSSTESPSLPSWIKFFDS------QSPDEDFVIPSLAGWVESHRLNEKS 82
S PLCT S +ESP LP WIKFFD+ +S D+ FVIP LA W+ES +L + +
Sbjct: 92 SPKPLCTITGSTEVSESPDLPDWIKFFDTKTSTHLESEDDVFVIPPLAHWLESQKLEDNN 151
Query: 83 RISSRVLSENHETDVDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLT 142
++ + L E +VDKIS +L +Y SP+ V EAL G VSN+LV Q L+RF ND
Sbjct: 152 KVVQKKLGETCNNEVDKISTMLENRYPSPENVAEALNGKAYRVSNTLVAQLLKRFHNDWI 211
Query: 143 PAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMST 202
A+G F WAK Q Y H+PE YN+MVD+LGK+K F LMWELV EM+ L G VSL TMS
Sbjct: 212 QAYGIFKWAKDQIPYRHSPESYNSMVDILGKAKNFRLMWELVDEMNHLA-GSVSLETMSK 270
Query: 203 IMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCI 262
++RRL R GR+ +A+ AFR ++KYG+ DT A++VLMD LVK SVE A+ VF E K I
Sbjct: 271 VIRRLARAGRHQEAIHAFRNIEKYGISTDTTAMNVLMDALVKEASVEDAHNVFRELKCSI 330
Query: 263 PLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDD 322
P + FN+LIHG+CK +K+D+A K M E+ + G PDV+SYT FIE +CREKDFR VD
Sbjct: 331 PFNLASFNVLIHGYCKAKKLDEAWKIMGEVEKSGLEPDVISYTAFIEAHCREKDFRNVDK 390
Query: 323 TLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILS 382
L +M+ KGCKP+VIT+TI+MHALGKAKQINEALKVYEKMK + C+PD+SFYSSLIFIL
Sbjct: 391 VLVQMEHKGCKPNVITFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILG 450
Query: 383 KAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCE 442
KAGR+ D EI EDM+KQGV P+VLTYNT+IS ACA S+EE AL LL KMEE CKPD +
Sbjct: 451 KAGRLTDVKEIVEDMEKQGVTPDVLTYNTLISCACAHSQEETALTLLLKMEEVSCKPDLK 510
Query: 443 TYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEM 502
TY PLLKM CRKKRMKVL FLL HMFKNDVS++AGTYA LVRGL E+GKL LACSFF EM
Sbjct: 511 TYHPLLKMFCRKKRMKVLKFLLDHMFKNDVSIEAGTYAILVRGLCENGKLHLACSFFGEM 570
Query: 503 ISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKEQKT 545
+SK +VP ST+KML+E+LE+K + + I L+ A Q T
Sbjct: 571 LSKAMVPKDSTFKMLKEELERKSMLEEMKIIENLMFCATNQDT 613
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224107985|ref|XP_002314678.1| predicted protein [Populus trichocarpa] gi|222863718|gb|EEF00849.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust.
Identities = 289/498 (58%), Positives = 364/498 (73%), Gaps = 5/498 (1%)
Query: 44 ESPSLPSWIKFFDSQSP----DEDFVIPSLAGWVESHRLNEKSRISSRVLSENHETDVDK 99
ESP LP+W+ +Q P D DFVIPSLA WVE+ L + S +L E ++ DK
Sbjct: 1 ESPDLPTWLSNSQNQKPSDPDDGDFVIPSLANWVENPNLETHRNVPSPLLFEPQVSNADK 60
Query: 100 ISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMH 159
+S+IL K+Y S VV+AL G+ +N LV Q L RF + AFG F WAK QT Y+H
Sbjct: 61 LSEILKKRYSSEAAVVKALNESGIDATNELVSQILMRFDSHCVVAFGVFIWAKNQTSYVH 120
Query: 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEA 219
TPE+Y+ M+D+LGK KKF LMW LV++M LN GYVSLAT S +MRRL + +Y DA++
Sbjct: 121 TPELYDYMIDILGKFKKFSLMWSLVEQMKGLN-GYVSLATASKVMRRLAKARKYKDAIDV 179
Query: 220 FRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKT 279
FRG++KYG KD AL+VLMD LVK VE A+ FLEFKDCI L S FNILIHG+CK
Sbjct: 180 FRGIEKYGASKDREALNVLMDALVKEGDVEDAHSAFLEFKDCITLDSSSFNILIHGYCKA 239
Query: 280 RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITY 339
R A+K M+EM + GF PDVVSY+CFI YC +KDFR V+ EMQEKGCKP+VITY
Sbjct: 240 RMFVVARKIMEEMEKHGFHPDVVSYSCFIAAYCEQKDFRNVEAVFDEMQEKGCKPNVITY 299
Query: 340 TIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKK 399
T VMHALGKA+Q+NEAL+VYEKMK + CLPD+ FYSSLI++LS++GR+KDA ++FEDM+K
Sbjct: 300 TTVMHALGKARQLNEALEVYEKMKRNGCLPDSKFYSSLIYVLSQSGRIKDAWDVFEDMEK 359
Query: 400 QGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKV 459
QGV N+ YNTMISSACA S+ +ALKLL++ME D CKPD +TYAPLLKMCCR+K +K+
Sbjct: 360 QGVCRNLWVYNTMISSACAHSQGGSALKLLERMEGDSCKPDVKTYAPLLKMCCRRKSIKL 419
Query: 460 LNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEE 519
L FLL+HMFKN+VS+D GTY LV +GKLE AC +F+E + KG+VP T+K L E
Sbjct: 420 LKFLLSHMFKNNVSVDLGTYTLLVNEFCRNGKLEHACFYFQEAVLKGMVPMVKTFKALVE 479
Query: 520 KLEKKRLGNAKERINKLL 537
+LE+K + KE+I KL+
Sbjct: 480 ELEQKNMKEMKEKIEKLM 497
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357480939|ref|XP_003610755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355512090|gb|AES93713.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 305/548 (55%), Positives = 387/548 (70%), Gaps = 14/548 (2%)
Query: 1 MLPKHNILKLLSQSHLQKHAKIYYLCYLS----CNPLCTTAESPSSTESPSLPSWIKFFD 56
ML K+ IL L++ HL +S NP CT + S ESP LP W+ F D
Sbjct: 44 MLSKYRILHHLTR-HLSPRITTTRSSNVSPHFFINPFCTVVVN--SPESPELPPWVMFSD 100
Query: 57 SQSP---DEDFVIPSLAGWVESHRLNEKSRISSRVLSEN--HETDVDKISKILSKQ-YQS 110
+P D+DFVIPSLA WV+S L K ++ ++ E H DV+KIS L +Q + S
Sbjct: 101 KPTPSNSDDDFVIPSLAHWVDSSILQTKPKLFAKPSLEESIHLEDVEKISTFLKEQRHSS 160
Query: 111 PDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDV 170
D VV+AL G G VSNSLV Q L+RF ND A+GFF WAK QT Y+H+PE+YN MVD+
Sbjct: 161 HDHVVQALDGSGFRVSNSLVMQVLKRFGNDWVAAYGFFIWAKKQTPYVHSPEVYNLMVDI 220
Query: 171 LGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEK 230
LGK+K+F LMW+LVKEM + GYV L TMS +MRR + R++DAVEAFRGM KYGVEK
Sbjct: 221 LGKAKEFDLMWKLVKEMKRIE-GYVCLDTMSKVMRRFAKAQRHEDAVEAFRGMGKYGVEK 279
Query: 231 DTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMK 290
DT AL+ L+D LVKG S+E A+ V EFK +PLSS FNILI+GWCK R + A+K M+
Sbjct: 280 DTAALNKLLDALVKGQSIEIAHNVLDEFKSSVPLSSPSFNILINGWCKVRNFEKARKVME 339
Query: 291 EMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAK 350
E + GF PDV +Y FIE YC +KDFRKVD+ L+EM+ GC P+ +TYTI++ GKA
Sbjct: 340 ERKEHGFEPDVFTYNNFIESYCHDKDFRKVDEVLEEMRGNGCPPNAVTYTILLLGYGKAG 399
Query: 351 QINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYN 410
Q+++AL+ YE+MK D +PDT FYSSL++IL KAGR+KDA E+F+DM KQGVV +V+TYN
Sbjct: 400 QLSKALEEYERMKKDGIVPDTPFYSSLMYILGKAGRLKDACEVFDDMPKQGVVRDVVTYN 459
Query: 411 TMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKN 470
TMIS+ACA S+EE AL+LL++MEE CKPD +TY PLLKMCC+KKRMKVL FLL HMFK+
Sbjct: 460 TMISTACAHSKEETALRLLKEMEETSCKPDLQTYHPLLKMCCKKKRMKVLKFLLDHMFKH 519
Query: 471 DVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAK 530
D+ D GTY LV+ L SGKL AC+FFEEM+SKG P +T K+L KLE K + K
Sbjct: 520 DLCPDRGTYTLLVQSLSNSGKLVEACTFFEEMVSKGFTPMETTVKLLTRKLEIKSMLKEK 579
Query: 531 ERINKLLA 538
++I +L+A
Sbjct: 580 DQIEELMA 587
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540343|ref|XP_003538649.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust.
Identities = 286/510 (56%), Positives = 370/510 (72%), Gaps = 11/510 (2%)
Query: 33 LCTTAESPSSTESPSLPSWIKFFDSQSP-----DEDFVIPSLAGWVESHRLNEKSRISSR 87
LCT AESP LP W+KF D+ +P D++FVIPSLA WV++H L K ++ ++
Sbjct: 31 LCTMAESPE------LPPWLKFSDTPTPPDADSDDNFVIPSLAHWVDTHMLITKPKVLTQ 84
Query: 88 VLSENHETDVDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTPAFGF 147
+++ ++D I+K+L K+Y SP+ AL G S+ LV Q L RFSND PA GF
Sbjct: 85 SPKQDNLDELDAITKVLKKRYPSPELAALALDGLSFQPSSGLVSQVLNRFSNDWVPALGF 144
Query: 148 FTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRL 207
F WAK+QTGY H+PE+ N MVD+LGK K F M +LV+EM +L GYV+L TM+ ++RRL
Sbjct: 145 FKWAKSQTGYRHSPELCNLMVDILGKCKSFDPMSDLVEEMAKLEQGYVTLETMAKVIRRL 204
Query: 208 VRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQ 267
+ +++DA+EAFR M K+GV KDT AL+VL+D LVKG+SVEHA+KV LEFK IPLSS
Sbjct: 205 AKARKHEDAIEAFRRMDKFGVNKDTAALNVLIDALVKGDSVEHAHKVVLEFKGLIPLSSH 264
Query: 268 IFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEM 327
FN+L+HGWC+ RK D+A+KAM++M + GF PDV SYT FIE YC E+DFRKVD L+EM
Sbjct: 265 SFNVLMHGWCRARKFDNARKAMEDMKELGFEPDVFSYTSFIEAYCHERDFRKVDQVLEEM 324
Query: 328 QEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRV 387
+E GC P+ +TYT VM LGKA Q+++AL+VYEKMK D C+ DT YS +IFIL KAGR+
Sbjct: 325 RENGCPPNAVTYTTVMLHLGKAGQLSKALEVYEKMKCDGCVADTPVYSCMIFILGKAGRL 384
Query: 388 KDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPL 447
KDA ++FEDM KQGVV +V+TYNTMIS+ACA S EE AL+LL++ME+ CKP+ TY PL
Sbjct: 385 KDACDVFEDMPKQGVVRDVVTYNTMISTACAHSREETALRLLKEMEDGSCKPNVGTYHPL 444
Query: 448 LKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGI 507
LKMCC+KKRMKVL FLL HMFKND+S D TY+ LV L ++GK+ A SF EEM+ KG
Sbjct: 445 LKMCCKKKRMKVLKFLLDHMFKNDISPDLATYSLLVNALCKTGKVADAYSFLEEMVLKGF 504
Query: 508 VPYHSTYKMLEEKLEKKRLGNAKERINKLL 537
P ST K L +LE + KER+ + +
Sbjct: 505 TPKPSTLKGLAGELESLSMLEEKERVEEWM 534
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356495784|ref|XP_003516753.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust.
Identities = 287/516 (55%), Positives = 375/516 (72%), Gaps = 12/516 (2%)
Query: 27 YLSCNPLCTTAESPSSTESPSLPSWIKFFDSQSP-----DEDFVIPSLAGWVESHRLNEK 81
+L NPLCT A ESP LP W+KF D+ +P D++FVIPSLA WV++H L K
Sbjct: 28 FLYGNPLCTMA------ESPELPPWLKFSDTPTPPDADSDDNFVIPSLAHWVDTHMLTTK 81
Query: 82 SRISSRVLSENHETDVDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDL 141
++ ++ +++ +++ ++K+L K+Y SP+ AL G S+ LV Q L RFSND
Sbjct: 82 PKVLTQSPKQDNLDELEAVTKVLQKRYPSPELASLALDGLSFQPSSGLVSQVLNRFSNDW 141
Query: 142 TPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMS 201
PA GFF WAK+ TGY H+PE+YN MVD+LGK + F M ELV+EM L GYV+L TM+
Sbjct: 142 VPALGFFKWAKSLTGYRHSPELYNLMVDILGKCRSFDSMSELVEEMARL-EGYVTLETMT 200
Query: 202 TIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDC 261
+MRRL R +++DA+EAF M+K+GV+KDT AL+VL+D LVKG+SVEHA+KV LEFK
Sbjct: 201 KVMRRLARARKHEDAIEAFGRMEKFGVKKDTAALNVLIDALVKGDSVEHAHKVVLEFKGS 260
Query: 262 IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVD 321
IPLSS+ FN+L+HGWC+ R D+A+KAM++M + GF PDV SYT FIE Y E+DFRKVD
Sbjct: 261 IPLSSRSFNVLMHGWCRARDFDNARKAMEDMKEHGFEPDVFSYTNFIEAYGHERDFRKVD 320
Query: 322 DTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFIL 381
L+EM+E GC P+ +TYT VM LGKA Q+ +AL+VYEKMKSD C+ DT FYSS+IFIL
Sbjct: 321 QVLEEMRENGCPPNAVTYTSVMLHLGKAGQLRKALEVYEKMKSDGCVADTPFYSSMIFIL 380
Query: 382 SKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDC 441
KAGR+KDA ++FEDM KQGVV +V+TYN+MIS+ACA S EE AL+LL++ME+ CKP+
Sbjct: 381 GKAGRLKDACDVFEDMPKQGVVRDVVTYNSMISTACAHSREETALRLLKEMEDGSCKPNV 440
Query: 442 ETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEE 501
TY LLKMCC+KKRMKVL FLL HMFKN++S D TY+ LV L +SGK+E A SF EE
Sbjct: 441 GTYHRLLKMCCKKKRMKVLKFLLDHMFKNNISPDLATYSLLVNALRKSGKVEDAYSFLEE 500
Query: 502 MISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLL 537
M+ +G P ST K L +LE K + K R+ + +
Sbjct: 501 MVLRGFTPKPSTLKKLAGELESKSMLEEKVRVEEWM 536
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15228825|ref|NP_188906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75274241|sp|Q9LUJ4.1|PP248_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22670, mitochondrial; Flags: Precursor gi|9279685|dbj|BAB01242.1| unnamed protein product [Arabidopsis thaliana] gi|332643142|gb|AEE76663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 299/553 (54%), Positives = 379/553 (68%), Gaps = 22/553 (3%)
Query: 1 MLPKHNILKLLSQSHLQKHAKIYYLCYLSCNPLCTTAESP-SSTESPSLPSWIKFFDSQS 59
ML K I KL+S + ++ I+ +L N T ESP + ESP LPSWIK F S
Sbjct: 1 MLTKLRISKLVSYTLPRR---IFQRRFLVTNN--TAEESPIVAAESPELPSWIKDFLSNK 55
Query: 60 P----------DEDFVIPSLAGWVESHRLNEKSRISSRVLSENHETDVDKISKILSKQYQ 109
P DEDFVIPSLA WVES + + + V+ + E D+DK+ L+K+
Sbjct: 56 PSSSSSSVSKDDEDFVIPSLANWVESQKFSRQQVSEGNVVKKPVE-DIDKVCDFLNKKDT 114
Query: 110 SPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVD 169
S + VV+ L C V V+ SLV Q LRRFSN A+GFF WA +QTGY+H+ YN MVD
Sbjct: 115 SHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANSQTGYVHSGHTYNAMVD 174
Query: 170 VLGKSKKFCLMWELVKEMDELNNG-YVSLATMSTIMRRLVRGGRYDDAVEAFRGMKK-YG 227
VLGK + F LMWELV EM++ V+L TMS +MRRL + G+Y+ AV+AF M+K YG
Sbjct: 175 VLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYNKAVDAFLEMEKSYG 234
Query: 228 VEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQK 287
V+ DT A++ LMD LVK NS+EHA++VFL+ D I ++ FNILIHG+CK RK DDA+
Sbjct: 235 VKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPDARTFNILIHGFCKARKFDDARA 294
Query: 288 AMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALG 347
M M F+PDVV+YT F+E YC+E DFR+V++ L+EM+E GC P+V+TYTIVMH+LG
Sbjct: 295 MMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYTIVMHSLG 354
Query: 348 KAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVL 407
K+KQ+ EAL VYEKMK D C+PD FYSSLI ILSK GR KDA EIFEDM QGV +VL
Sbjct: 355 KSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQGVRRDVL 414
Query: 408 TYNTMISSACARSEEENALKLLQKMEE---DLCKPDCETYAPLLKMCCRKKRMKVLNFLL 464
YNTMIS+A S +E AL+LL++ME+ + C P+ ETYAPLLKMCC KK+MK+L LL
Sbjct: 415 VYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYAPLLKMCCHKKKMKLLGILL 474
Query: 465 THMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKK 524
HM KNDVS+D TY L+RGL SGK+E AC FFEE + KG+VP ST KML ++LEKK
Sbjct: 475 HHMVKNDVSIDVSTYILLIRGLCMSGKVEEACLFFEEAVRKGMVPRDSTCKMLVDELEKK 534
Query: 525 RLGNAKERINKLL 537
+ AK +I L+
Sbjct: 535 NMAEAKLKIQSLV 547
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224107981|ref|XP_002314676.1| predicted protein [Populus trichocarpa] gi|222863716|gb|EEF00847.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 284/559 (50%), Positives = 372/559 (66%), Gaps = 25/559 (4%)
Query: 1 MLPKHNILKLLSQSHLQKHAKIYYLC------YLSCNPLCTTAESPSSTESPSLPSWIKF 54
M PKH +LKL +S K YL C + SP S L +W+
Sbjct: 1 MQPKHQMLKLYRKSLSPKPLLANYLLPKLLCTLTELTLACDSPNSPQPRPS-ILSTWL-- 57
Query: 55 FDSQSP------DEDFVIPSLAGW-----VESHRLNEKSRISSRVLSENHETDVDKISKI 103
+ Q P + FVIPS A +ESH K+ S +LSE ++D K+ +I
Sbjct: 58 CNDQKPKVGKPTNGHFVIPSHANCDKYPNIESH----KNIASLSLLSEASDSDAHKVGEI 113
Query: 104 LSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEM 163
L K Y S D VVEAL G+S ++ LV Q L+RFSN A G F WAK QTGY+H PE+
Sbjct: 114 LKKHYLSEDAVVEALNESGISATHDLVSQLLKRFSNQWLIALGVFIWAKNQTGYVHKPEI 173
Query: 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGM 223
YN+M+D+LGKS+KF LMW+LV+EM LN GYVSL TM +M+RLVR G+Y++A++AFRG+
Sbjct: 174 YNSMIDILGKSRKFSLMWDLVQEMSGLN-GYVSLVTMGKVMKRLVRDGKYNEAIDAFRGL 232
Query: 224 KKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVD 283
+K+G+ K T A++VLMD L + VE A V LEF+ C+ L + +NIL G+CK R
Sbjct: 233 EKFGLSKSTEAMNVLMDILARNGRVEDARAVALEFEGCLTLDYRSYNILSSGYCKARMFG 292
Query: 284 DAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVM 343
DA+K M+EM ++GF P+VVSYT FIE Y +KDFR V+ L EMQEKGC P +ITYT+ +
Sbjct: 293 DARKTMEEMEERGFHPNVVSYTAFIEAYGEQKDFRNVEIILNEMQEKGCPPDLITYTVYI 352
Query: 344 HALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVV 403
ALGKA+QIN+AL++ E++K + + T FY SLI L +GR+KDA IFED++KQGV
Sbjct: 353 RALGKARQINKALEICEEIKRNGFVLGTQFYCSLIHSLCLSGRLKDAWNIFEDVEKQGVG 412
Query: 404 PNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFL 463
++ Y MIS+ACA S++E+ALKLL KMEED CKPD +TYAPLLKMCCRKK MK+L FL
Sbjct: 413 RDLGMYKAMISAACALSQDESALKLLHKMEEDSCKPDVQTYAPLLKMCCRKKSMKMLKFL 472
Query: 464 LTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEK 523
L HMF+NDVS+D TY LV GL + GKL+ AC FF+E + KG+VP TYK+L E+LE+
Sbjct: 473 LNHMFENDVSIDIVTYDLLVHGLRKQGKLKYACFFFQEAVLKGMVPCDKTYKILLEELER 532
Query: 524 KRLGNAKERINKLLAHAKE 542
K + K +I KL+ AKE
Sbjct: 533 KNMAEMKGKIEKLMLRAKE 551
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 546 | ||||||
| TAIR|locus:2094394 | 562 | AT3G22670 [Arabidopsis thalian | 0.890 | 0.864 | 0.545 | 2.3e-135 | |
| TAIR|locus:2103075 | 508 | AT3G04130 "AT3G04130" [Arabido | 0.760 | 0.816 | 0.386 | 3.1e-76 | |
| TAIR|locus:2097395 | 638 | AT3G49730 [Arabidopsis thalian | 0.783 | 0.670 | 0.301 | 6.6e-58 | |
| TAIR|locus:2035206 | 523 | AT1G52640 [Arabidopsis thalian | 0.800 | 0.835 | 0.309 | 1.6e-56 | |
| TAIR|locus:2156213 | 637 | AT5G65820 [Arabidopsis thalian | 0.796 | 0.682 | 0.295 | 1.1e-55 | |
| TAIR|locus:2026346 | 510 | AT1G71060 [Arabidopsis thalian | 0.771 | 0.825 | 0.300 | 2.3e-55 | |
| TAIR|locus:2096099 | 599 | AT3G62470 "AT3G62470" [Arabido | 0.785 | 0.716 | 0.271 | 6.7e-49 | |
| TAIR|locus:2096074 | 599 | AT3G62540 "AT3G62540" [Arabido | 0.785 | 0.716 | 0.264 | 2e-47 | |
| TAIR|locus:2185455 | 598 | AT5G14820 "AT5G14820" [Arabido | 0.785 | 0.717 | 0.264 | 2.6e-47 | |
| TAIR|locus:2012883 | 537 | AT1G20300 [Arabidopsis thalian | 0.813 | 0.826 | 0.276 | 2.3e-46 |
| TAIR|locus:2094394 AT3G22670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1326 (471.8 bits), Expect = 2.3e-135, P = 2.3e-135
Identities = 274/502 (54%), Positives = 344/502 (68%)
Query: 51 WIKFFDSQSP----------DEDFVIPSLAGWVESHRLNEKSRISSRVLSENHETDVDKI 100
WIK F S P DEDFVIPSLA WVES + + + V+ + E D+DK+
Sbjct: 47 WIKDFLSNKPSSSSSSVSKDDEDFVIPSLANWVESQKFSRQQVSEGNVVKKPVE-DIDKV 105
Query: 101 SKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHT 160
L+K+ S + VV+ L C V V+ SLV Q LRRFSN A+GFF WA +QTGY+H+
Sbjct: 106 CDFLNKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANSQTGYVHS 165
Query: 161 PEMYNTMVDVLGKSKKFCLMWELVKEMDELNNG-YVSLATMSTIMRRLVRGGRYDDAVEA 219
YN MVDVLGK + F LMWELV EM++ V+L TMS +MRRL + G+Y+ AV+A
Sbjct: 166 GHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYNKAVDA 225
Query: 220 FRGMKK-YGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCK 278
F M+K YGV+ DT A++ LMD LVK NS+EHA++VFL+ D I ++ FNILIHG+CK
Sbjct: 226 FLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPDARTFNILIHGFCK 285
Query: 279 TRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVIT 338
RK DDA+ M M F+PDVV+YT F+E YC+E DFR+V++ L+EM+E GC P+V+T
Sbjct: 286 ARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVT 345
Query: 339 YTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMK 398
YTIVMH+LGK+KQ+ EAL VYEKMK D C+PD FYSSLI ILSK GR KDA EIFEDM
Sbjct: 346 YTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMT 405
Query: 399 KQGVVPNVLTYNTMISSACARSEEENALKLLQKMEED---LCKPDCETYAPLLKMCCRKK 455
QGV +VL YNTMIS+A S +E AL+LL++ME++ C P+ ETYAPLLKMCC KK
Sbjct: 406 NQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYAPLLKMCCHKK 465
Query: 456 RMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYK 515
+MK+L LL HM KNDVS+D TY L+RGL SGK+E AC FFEE + KG+VP ST K
Sbjct: 466 KMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEACLFFEEAVRKGMVPRDSTCK 525
Query: 516 MXXXXXXXXXXGNAKERINKLL 537
M AK +I L+
Sbjct: 526 MLVDELEKKNMAEAKLKIQSLV 547
|
|
| TAIR|locus:2103075 AT3G04130 "AT3G04130" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
Identities = 164/424 (38%), Positives = 249/424 (58%)
Query: 123 VSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWE 182
V++S+ LV + L RF +D A G WA++ G+ H+ + Y+ VD+LGK+KK W+
Sbjct: 83 VNLSDGLVHKLLHRFRDDWRSALGILKWAESCKGHKHSSDAYDMAVDILGKAKK----WD 138
Query: 183 LVKEMDELNNG--YVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMD 240
+KE E G V+L T++ IMRR G +++AV F + ++G+EK+T ++++L+D
Sbjct: 139 RMKEFVERMRGDKLVTLNTVAKIMRRFAGAGEWEEAVGIFDRLGEFGLEKNTESMNLLLD 198
Query: 241 TLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPD 300
TL K VE A V L+ K I ++ FNI IHGWCK +V++A ++EM GF P
Sbjct: 199 TLCKEKRVEQARVVLLQLKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPC 258
Query: 301 VVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYE 360
V+SYT I YC++ +F KV + L EM+ G P+ ITYT +M +L K+ EAL+V
Sbjct: 259 VISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVAT 318
Query: 361 KMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFE-DMKKQGVVPNVLTYNTMISSACAR 419
+MK C PD+ FY+ LI L++AGR+++A +F +M + GV N TYN+MI+ C
Sbjct: 319 RMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHH 378
Query: 420 SEEENALKLLQKMEE-DLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMF-KNDVSMDAG 477
EE+ A++LL++ME +LC PD TY PLL+ C ++ + + LL M K+ +S+D
Sbjct: 379 DEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKHHLSLDES 438
Query: 478 TYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMXXXXXXXXXXGNAKERINKLL 537
TY L++ L + E A FEEMIS+ I P H T + + ERI ++
Sbjct: 439 TYTFLIQRLCRANMCEWAYCLFEEMISQDITPRHRTCLLLLEEVKKKNMHESAERIEHIM 498
Query: 538 AHAK 541
K
Sbjct: 499 KTVK 502
|
|
| TAIR|locus:2097395 AT3G49730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
Identities = 131/435 (30%), Positives = 228/435 (52%)
Query: 88 VLSENHETD----VDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTP 143
V E HE + V+KI +IL + K+ AL G+ + L+ + L R +
Sbjct: 54 VCPEKHEDEFAGEVEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCGDAGNL 113
Query: 144 AFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTI 203
+ FF WA Q GY H+ E+ +MV +L K ++F +W L++EM + N + +
Sbjct: 114 GYRFFLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVL 173
Query: 204 MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIP 263
MRR AVE M KYG+E D L+D L K SV+ A KVF + ++ P
Sbjct: 174 MRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFP 233
Query: 264 LSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDT 323
+ + F L++GWC+ K+ +A++ + +M + G PD+V +T + Y D
Sbjct: 234 PNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDL 293
Query: 324 LKEMQEKGCKPSVITYTIVMHALGKA-KQINEALKVYEKMKSDDCLPDTSFYSSLIFILS 382
+ +M+++G +P+V YT+++ AL + K+++EA++V+ +M+ C D Y++LI
Sbjct: 294 MNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFC 353
Query: 383 KAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCE 442
K G + + +DM+K+GV+P+ +TY ++ + + + E L+L++KM+ C PD
Sbjct: 354 KWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLL 413
Query: 443 TYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEM 502
Y ++++ C+ +K L M N +S T+ ++ G G L AC+ F+EM
Sbjct: 414 IYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEM 473
Query: 503 ISKGI--VPYHSTYK 515
+S+GI P + T K
Sbjct: 474 VSRGIFSAPQYGTLK 488
|
|
| TAIR|locus:2035206 AT1G52640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 137/442 (30%), Positives = 225/442 (50%)
Query: 79 NEKSRISSRVLSENHETD-VDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRF 137
++ RI S +L + D V++IS++LS D + L VS++LVEQ L+R
Sbjct: 19 SQSFRIFSTLLHDPPSPDLVNEISRVLSDHRNPKDDLEHTLVAYSPRVSSNLVEQVLKRC 78
Query: 138 SNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSL 197
N PA FF WA+ + H+ E Y+ +V++LG SK+F L+W+ + E E N +S
Sbjct: 79 KNLGFPAHRFFLWARRIPDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISS 138
Query: 198 ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLE 257
+ R R +A AF M ++G++ L L+ +L V HA + F +
Sbjct: 139 KVFWIVFRAYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGK 198
Query: 258 FKD--CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK 315
K +P S++ ++IL+ GW + R A+K EM ++ D+++Y ++ C+
Sbjct: 199 AKGFGIVP-SAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSG 257
Query: 316 DFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYS 375
D +EM G KP ++ I +HA A ++ A KV ++MK D +P+ ++
Sbjct: 258 DVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFN 317
Query: 376 SLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEED 435
+I L K +V DA + ++M ++G P+ TYN++++ C E A KLL +M+
Sbjct: 318 HIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRT 377
Query: 436 LCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLI-ESGKLEL 494
C PD TY +LK+ R R + M + TY ++ GL+ + GKLE
Sbjct: 378 KCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEE 437
Query: 495 ACSFFEEMISKGIVPYHSTYKM 516
AC +FE MI +GI PY +T +M
Sbjct: 438 ACRYFEMMIDEGIPPYSTTVEM 459
|
|
| TAIR|locus:2156213 AT5G65820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 131/443 (29%), Positives = 232/443 (52%)
Query: 80 EKSRISSRVLSENHE---TDVDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRR 136
EKS + R + ++ +DV+K +IL K + K+ AL GV + L+E+ L R
Sbjct: 64 EKSH-NDRTKNSKYDEFASDVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNR 122
Query: 137 FSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVS 196
+ + FF WA Q Y H+ E+Y +MV +L K ++F +W L++EM + N +
Sbjct: 123 CGDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIE 182
Query: 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFL 256
+++R A+E M K+G E D L+D L K SV+ A K+F
Sbjct: 183 PELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFE 242
Query: 257 EFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKD 316
+ + P++ + F L++GWC+ K+ +A+ + +M + GF PD+V YT + Y
Sbjct: 243 DMRMRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGK 302
Query: 317 FRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSS 376
D L++M+ +G +P+ YT+++ AL K ++ EA+KV+ +M+ +C D Y++
Sbjct: 303 MADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTA 362
Query: 377 LIFILSKAGRVKDANEIFEDMKKQGVVPNVLTY-NTMISSACARSEEENALKLLQKMEED 435
L+ K G++ + +DM K+G++P+ LTY + M++ S EE L+L++KM +
Sbjct: 363 LVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEE-CLELMEKMRQI 421
Query: 436 LCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELA 495
PD Y ++++ C+ +K L M +N +S T+ ++ GL G L A
Sbjct: 422 EYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEA 481
Query: 496 CSFFEEMISKGI--VPYHSTYKM 516
F+EM+++G+ V + T K+
Sbjct: 482 SDHFKEMVTRGLFSVSQYGTLKL 504
|
|
| TAIR|locus:2026346 AT1G71060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 129/429 (30%), Positives = 225/429 (52%)
Query: 82 SRISSRVLSENHETDVDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDL 141
S + ++V + + D ++I KIL+K S KV L V +S +L+E+ L++ SN
Sbjct: 51 SSVETQVSANDASQDAERICKILTKFTDS--KVETLLNEASVKLSPALIEEVLKKLSNAG 108
Query: 142 TPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMS 201
A F WA+ Q G+ HT YN +++ LGK K+F L+W LV +M +S T +
Sbjct: 109 VLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKK--LLSKETFA 166
Query: 202 TIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDC 261
I RR R + +A+ AF M+++G + ++ + ++DTL K +V A KVF + K
Sbjct: 167 LISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKK 226
Query: 262 -IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKV 320
+ + IL+ GW + + + +EM +GF PDVV+Y I +C+ K + +
Sbjct: 227 RFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEA 286
Query: 321 DDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFI 380
EM+++ CKPS + +++ LG K++N+AL+ +E+ KS + Y++L+
Sbjct: 287 IRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGA 346
Query: 381 LSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPD 440
+ R++DA + ++M+ +GV PN TY+ ++ + A ++ Q M C+P
Sbjct: 347 YCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTMS---CEPT 403
Query: 441 CETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFE 500
TY +++M C K+R+ + + M V ++SL+ L KL+ AC +F
Sbjct: 404 VSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFN 463
Query: 501 EMISKGIVP 509
EM+ GI P
Sbjct: 464 EMLDVGIRP 472
|
|
| TAIR|locus:2096099 AT3G62470 "AT3G62470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 119/439 (27%), Positives = 222/439 (50%)
Query: 73 VESHRLNEKSRISSRVLSENHETDVDKISKILSKQYQSPDKVVEA-LKGCGVSVSNSLVE 131
VES N++ S V S + +V+++ K++ + + + D+ +EA L + +S+ L+
Sbjct: 107 VESECDNDEETGVSCVESSTNPEEVERVCKVIDELF-ALDRNMEAVLDEMKLDLSHDLIV 165
Query: 132 QTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELN 191
+ L RF + PAF FF WA + G+ H YN+M+ +L K+++F M +++EM
Sbjct: 166 EVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMG--T 223
Query: 192 NGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHA 251
G +++ T + M+ AV F MKKY + ++ L+D+L + + A
Sbjct: 224 KGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEA 283
Query: 252 YKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHY 311
+F + K+ + + +L++GWC+ R + +A + +M QG PD+V++ +E
Sbjct: 284 QVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGL 343
Query: 312 CREKDFRKVDDTLK---EMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCL 368
R RK D +K M+ KG P+V +YTI++ K + A++ ++ M
Sbjct: 344 LRS---RKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQ 400
Query: 369 PDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKL 428
PD + Y+ LI ++ E+ ++M+++G P+ TYN +I + E+A ++
Sbjct: 401 PDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRI 460
Query: 429 LQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIE 488
KM ++ +P T+ ++K + ++ + M K + D +Y L+RGLI
Sbjct: 461 YNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIG 520
Query: 489 SGKLELACSFFEEMISKGI 507
GK AC + EEM+ KG+
Sbjct: 521 EGKSREACRYLEEMLDKGM 539
|
|
| TAIR|locus:2096074 AT3G62540 "AT3G62540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 116/439 (26%), Positives = 219/439 (49%)
Query: 73 VESHRLNEKSRISSRVLSENHETDVDKISKILSKQYQSPDKVVEA-LKGCGVSVSNSLVE 131
VES N++ S V S + +V+++ K++ + + + D+ +EA L + +S+ L+
Sbjct: 107 VESECDNDEETGVSCVESSTNPEEVERVCKVIDELF-ALDRNMEAVLDEMKLDLSHDLIV 165
Query: 132 QTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELN 191
+ L RF + PAF FF WA + G+ H YN+M+ +L K+++F M +++EM
Sbjct: 166 EVLERFRHARKPAFRFFCWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMG--T 223
Query: 192 NGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHA 251
G +++ T + M+ AV F MKKY + ++ L+D+L + + A
Sbjct: 224 KGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEA 283
Query: 252 YKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHY 311
+F + K+ + + +L++GWC+ R + +A + +M G PD+V++ +E
Sbjct: 284 QVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGL 343
Query: 312 CREKDFRKVDDTLK---EMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCL 368
R K D +K M+ KG P+V +YTI++ K + A++ ++ M
Sbjct: 344 LRSM---KKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQ 400
Query: 369 PDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKL 428
PD + Y+ LI ++ E+ ++M+++G P+ TYN +I + E+ ++
Sbjct: 401 PDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRI 460
Query: 429 LQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIE 488
KM ++ +P T+ ++K + ++ + M K + D +Y L+RGLI
Sbjct: 461 YNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLIS 520
Query: 489 SGKLELACSFFEEMISKGI 507
GK AC + EEM+ KG+
Sbjct: 521 EGKSREACRYLEEMLDKGM 539
|
|
| TAIR|locus:2185455 AT5G14820 "AT5G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 116/439 (26%), Positives = 219/439 (49%)
Query: 73 VESHRLNEKSRISSRVLSENHETDVDKISKILSKQYQSPDKVVEA-LKGCGVSVSNSLVE 131
VES N++ S V S + +V+++ K++ + + + D+ +EA L + +S+ L+
Sbjct: 106 VESECDNDEETGVSCVESSTNPEEVERVCKVIDELF-ALDRNMEAVLDEMKLDLSHDLIV 164
Query: 132 QTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELN 191
+ L RF + PAF FF WA + G+ H YN+M+ +L K+++F M +++EM
Sbjct: 165 EVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMG--T 222
Query: 192 NGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHA 251
G +++ T + M+ AV F MKKY + ++ L+D+L + + A
Sbjct: 223 KGLLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEA 282
Query: 252 YKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHY 311
+F + K+ + + +L++GWC+ R + +A + +M G PD+V++ +E
Sbjct: 283 QVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGL 342
Query: 312 CREKDFRKVDDTLK---EMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCL 368
R K D +K M+ KG P+V +YTI++ K + A++ ++ M
Sbjct: 343 LRSM---KKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQ 399
Query: 369 PDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKL 428
PD + Y+ LI ++ E+ ++M+++G P+ TYN +I + E+ ++
Sbjct: 400 PDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRI 459
Query: 429 LQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIE 488
KM ++ +P T+ ++K + ++ + M K + D +Y L+RGLI
Sbjct: 460 YNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLIS 519
Query: 489 SGKLELACSFFEEMISKGI 507
GK AC + EEM+ KG+
Sbjct: 520 EGKSREACRYLEEMLDKGM 538
|
|
| TAIR|locus:2012883 AT1G20300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 128/463 (27%), Positives = 215/463 (46%)
Query: 59 SPDEDFVIPSLAGWVESHRLNEKSRISSRVLSEN---HETDVDKISKILSKQYQSPDKVV 115
+P++ + ++ H + + +L+ + H +D S+I + Q SP V
Sbjct: 58 TPEDTQTVEKFHSIIKDHYRKNPTSPNDAILNPSLTLHALSLD-FSQIETSQV-SPSVVR 115
Query: 116 EALKGCGVSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMH-TPEMYNTMVDVLGKS 174
++ CG SV + + L + FF WA ++ Y H +P YN M+D+ GK
Sbjct: 116 CVIEKCG-SVRHGI----------PLHQSLAFFNWATSRDDYDHKSPHPYNEMIDLSGKV 164
Query: 175 KKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRA 234
++F L W L+ M N +S+ T + ++RR VR G +AV F M+ YG D A
Sbjct: 165 RQFDLAWHLIDLMKS-RNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIA 223
Query: 235 LSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQ 294
S+++ L + A F KD ++ L+ GWC+ ++ +A+K KEM
Sbjct: 224 FSIVISNLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKL 283
Query: 295 QGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINE 354
G P+V +Y+ I+ CR + D +M + GC P+ IT+ +M KA + +
Sbjct: 284 AGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEK 343
Query: 355 ALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMIS 414
L+VY +MK C PDT Y+ LI + +++A ++ M K+ N T+NT+
Sbjct: 344 VLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFR 403
Query: 415 SACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSM 474
+ + A ++ KM E C+P+ TY L++M K ++ + M +V
Sbjct: 404 YIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEP 463
Query: 475 DAGTYASLVRGLIESGKLELACSFFEEMIS-KGIVPYHSTYKM 516
+ TY LV G A F+EM+ K + P S Y+M
Sbjct: 464 NVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEM 506
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LUJ4 | PP248_ARATH | No assigned EC number | 0.5406 | 0.9725 | 0.9448 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 546 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-21 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-21 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.004 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 2e-21
Identities = 68/318 (21%), Positives = 133/318 (41%), Gaps = 15/318 (4%)
Query: 201 STIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVF--LEF 258
+T++ + G+ D E F M GVE + L+D + V A+ + +
Sbjct: 476 TTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535
Query: 259 KDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQG--FSPDVVSYTCFIEHYCREKD 316
K+ P +FN LI ++ VD A + EM + PD ++ ++
Sbjct: 536 KNVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594
Query: 317 FRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSS 376
+ + + + E K + YTI +++ + + AL +Y+ MK PD F+S+
Sbjct: 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654
Query: 377 LIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDL 436
L+ + AG + A EI +D +KQG+ ++Y++++ + + AL+L + ++
Sbjct: 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714
Query: 437 CKPDCETYAPLLKMCCR----KKRMKVLNFLLTHMFK-NDVSMDAGTYASLVRGLIESGK 491
+P T L+ C K ++VL+ + N + TY+ L+
Sbjct: 715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI-----TYSILLVASERKDD 769
Query: 492 LELACSFFEEMISKGIVP 509
++ + GI P
Sbjct: 770 ADVGLDLLSQAKEDGIKP 787
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 3e-21
Identities = 91/394 (23%), Positives = 162/394 (41%), Gaps = 69/394 (17%)
Query: 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGY-VSLATMSTIMRRLVRGGRYDDAVEAFR 221
+Y T++ KS K M+E+ EM N G ++ T ++ R G+ A A+
Sbjct: 474 LYTTLISTCAKSGKVDAMFEVFHEMV--NAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531
Query: 222 GMKKYGVEKD-----------------TRALSVL--------------------MDTLVK 244
M+ V+ D RA VL M
Sbjct: 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591
Query: 245 GNSVEHAYKVFLEF-KDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVS 303
V+ A +V+ + I + +++ I ++ + D A +M ++G PD V
Sbjct: 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651
Query: 304 YTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMK 363
++ ++ D K + L++ +++G K ++Y+ +M A AK +AL++YE +K
Sbjct: 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711
Query: 364 SDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEE- 422
S P S ++LI L + ++ A E+ +MK+ G+ PN +TY +++ A R ++
Sbjct: 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY-SILLVASERKDDA 770
Query: 423 ENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKND-------VSMD 475
+ L LL + +ED KP+ + +C R F+ VS D
Sbjct: 771 DVGLDLLSQAKEDGIKPNLVMCRCITGLCLR-------------RFEKACALGEPVVSFD 817
Query: 476 AGTYASLVRGLIESGKLELACSFFEEMISKGIVP 509
+G R IE+ A + E IS G +P
Sbjct: 818 SG------RPQIENKWTSWALMVYRETISAGTLP 845
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 83.8 bits (207), Expect = 9e-17
Identities = 73/318 (22%), Positives = 138/318 (43%), Gaps = 18/318 (5%)
Query: 206 RLVRGGRYDDAVEAFRGMKKYG-VEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPL 264
RL+R GR D ++ M+K G ++ D + K +V+ A++ F I
Sbjct: 379 RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFR----FAKLIRN 434
Query: 265 SS-QIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVD-- 321
+ FN+L+ ++ +D A + ++ + + G D YT I C + KVD
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIST-CAKSG--KVDAM 491
Query: 322 -DTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFI 380
+ EM G + +V T+ ++ +A Q+ +A Y M+S + PD +++LI
Sbjct: 492 FEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551
Query: 381 LSKAGRVKDANEIFEDMKKQG--VVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCK 438
++G V A ++ +MK + + P+ +T ++ + + + A ++ Q + E K
Sbjct: 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611
Query: 439 PDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSF 498
E Y + C +K + M K V D +++LV +G L+ A
Sbjct: 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671
Query: 499 FEEMISKGI----VPYHS 512
++ +GI V Y S
Sbjct: 672 LQDARKQGIKLGTVSYSS 689
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 1e-14
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 299 PDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGK 348
PDVV+Y I+ YC++ + EM+++G KP+V TY+I++ L K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 5e-13
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 369 PDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSAC 417
PD Y++LI K G+V++A ++F +MKK+G+ PNV TY+ +I C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 5e-11
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 334 PSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLI 378
P V+TY ++ K ++ EALK++ +MK P+ YS LI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 1e-10
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 269 FNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR 313
+N LI G+CK KV++A K EM ++G P+V +Y+ I+ C+
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 3e-09
Identities = 62/303 (20%), Positives = 135/303 (44%), Gaps = 22/303 (7%)
Query: 211 GRYDDAVEAFRGMKKYGVEKDTRAL-SVLMDTLVKGNSVEHAYKVFLEFKDC-IPLSSQI 268
G +DA F GM EK T A S+L + G S E A ++ E +D + +
Sbjct: 273 GDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYS-EEALCLYYEMRDSGVSIDQFT 327
Query: 269 FNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQ 328
F+I+I + + ++ A++A + + GF D+V+ T ++ Y + + +++D + +
Sbjct: 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK---WGRMEDA-RNVF 383
Query: 329 EKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVK 388
++ + ++I++ ++ G + +A++++E+M ++ P+ + +++ +G +
Sbjct: 384 DRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443
Query: 389 DANEIFEDMKK-QGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPL 447
EIF+ M + + P + Y MI + A ++++ KP +A L
Sbjct: 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP---FKPTVNMWAAL 500
Query: 448 LKMCCRKKRMKVLNFLLTHMFKNDVSMDA---GTYASLVRGLIESGKLELACSFFEEMIS 504
L C K +++ ++ M Y L+ SG+ A E +
Sbjct: 501 LTACRIHKNLELGRLAAEKLY----GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556
Query: 505 KGI 507
KG+
Sbjct: 557 KGL 559
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 4e-09
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 404 PNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCR 453
P+V+TYNT+I C + + E ALKL +M++ KP+ TY+ L+ C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 56/282 (19%), Positives = 107/282 (37%), Gaps = 43/282 (15%)
Query: 268 IFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDF--RKVDDTLK 325
+ N LI + +A+K M + D VS+T I Y EK+ K +T
Sbjct: 325 VCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGY--EKNGLPDKALETYA 378
Query: 326 EMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAG 385
M++ P IT V+ A ++ +K++E + + ++LI + SK
Sbjct: 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438
Query: 386 RVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYA 445
+ A E+F ++ ++ +V+++ ++I+ + AL ++M L KP+ T
Sbjct: 439 CIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLTL-KPNSVTLI 493
Query: 446 PLLKMCCRKKRMKVLNFLLTHMFKNDVSM------------------------------D 475
L C R + + H+ + + D
Sbjct: 494 AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKD 553
Query: 476 AGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKML 517
++ L+ G + GK +A F M+ G+ P T+ L
Sbjct: 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 74/308 (24%), Positives = 131/308 (42%), Gaps = 46/308 (14%)
Query: 214 DDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIF--NI 271
D A+E + M++ V D ++ ++ ++ K+ E + L S + N
Sbjct: 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH-ELAERKGLISYVVVANA 429
Query: 272 LIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFI-----EHYCREK--DFRKVDDTL 324
LI + K + +D KA+ E+F DV+S+T I + C E FR++ TL
Sbjct: 430 LIEMYSKCKCID---KAL-EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL 485
Query: 325 KEMQEKGCKPSVITYTIVMHA------LGKAKQIN-EALKVYEKMKSDDCLPDTSFYSSL 377
K P+ +T + A L K+I+ L+ + D LP+ +L
Sbjct: 486 K--------PNSVTLIAALSACARIGALMCGKEIHAHVLRT--GIGFDGFLPN-----AL 530
Query: 378 IFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLC 437
+ + + GR+ A F +K +V+++N +++ A + A++L +M E
Sbjct: 531 LDLYVRCGRMNYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585
Query: 438 KPDCETYAPLLKMC-CRKKRMKVLNFLLTHMFKNDVSM--DAGTYASLVRGLIESGKLEL 494
PD T+ LL C C + M H + S+ + YA +V L +GKL
Sbjct: 586 NPDEVTFISLL--CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTE 643
Query: 495 ACSFFEEM 502
A +F +M
Sbjct: 644 AYNFINKM 651
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 74/366 (20%), Positives = 144/366 (39%), Gaps = 69/366 (18%)
Query: 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEK-DTRALSVLMDTLVKGNSVEHAYKV 254
S ++ + + +LV GR+ +A+E F ++ L++ + S+ V
Sbjct: 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAV 145
Query: 255 FLEFKDC-IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR 313
+ + + N ++ K + DA++ EM ++ ++ S+ I
Sbjct: 146 YWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVD 201
Query: 314 EKDFRKVDDTLKEMQEKGCKPSVITYTIVMHA---LGKA---KQINE-ALK--VYEKMKS 364
++R+ +EM E G T+ +++ A LG A +Q++ LK V
Sbjct: 202 AGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG---- 257
Query: 365 DDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEEN 424
DT +LI + SK G ++DA +F+ M ++ V +N+M++ E
Sbjct: 258 -----DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV----AWNSMLAGYALHGYSEE 308
Query: 425 ALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMK------------------VLNFLLTH 466
AL L +M + D T++ ++++ R ++ V N L
Sbjct: 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368
Query: 467 MF------------------KNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIV 508
++ KN +S +A L+ G G+ A FE MI++G+
Sbjct: 369 LYSKWGRMEDARNVFDRMPRKNLISWNA-----LIAGYGNHGRGTKAVEMFERMIAEGVA 423
Query: 509 PYHSTY 514
P H T+
Sbjct: 424 PNHVTF 429
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 4e-08
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 34/173 (19%)
Query: 370 DTSFYSSLIFILSKAGRVKDANEIFEDM--------------------KKQGVV------ 403
+ Y L + GR+KD ++ EDM KKQ V
Sbjct: 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRF 428
Query: 404 ------PNVLTYNTMISSACARSEE-ENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKR 456
P + T+N M+ S CA S++ + AL++L+ ++E K DC+ Y L+ C + +
Sbjct: 429 AKLIRNPTLSTFN-MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK 487
Query: 457 MKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVP 509
+ + + M V + T+ +L+ G +G++ A + M SK + P
Sbjct: 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP 540
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (109), Expect = 6e-07
Identities = 12/34 (35%), Positives = 25/34 (73%)
Query: 330 KGCKPSVITYTIVMHALGKAKQINEALKVYEKMK 363
KG KP V+TY ++ L +A +++EA+++ ++M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 8e-07
Identities = 58/250 (23%), Positives = 99/250 (39%), Gaps = 21/250 (8%)
Query: 209 RGGRYDDAVEAFRGMKKYGVEKDT-------RALSVLMDTLVKGNSVEHAYKVFLEFKDC 261
+ G +D+A+ + M GV D R + D L +G V HA+ V F+
Sbjct: 164 KAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD-LARGREV-HAHVVRFGFELD 221
Query: 262 IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVD 321
+ + N LI + K V A+ M ++ D +S+ I Y + +
Sbjct: 222 V----DVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGL 273
Query: 322 DTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFIL 381
+ M+E P ++T T V+ A +++ + D S +SLI +
Sbjct: 274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY 333
Query: 382 SKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDC 441
G +A ++F M+ + V ++ MIS + AL+ ME+D PD
Sbjct: 334 LSLGSWGEAEKVFSRMETKDAV----SWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389
Query: 442 ETYAPLLKMC 451
T A +L C
Sbjct: 390 ITIASVLSAC 399
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-06
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 337 ITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDT 371
+TY ++ L KA ++ EAL+++++MK PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 5/165 (3%)
Query: 328 QEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRV 387
Q + V+++ I++ + + A++++ +M PD + SL+ S++G V
Sbjct: 546 QFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605
Query: 388 KDANEIFEDMK-KQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAP 446
E F M+ K + PN+ Y ++ + A + KM PD +
Sbjct: 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGA 662
Query: 447 LLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGK 491
LL C + +++ H+F+ D + G Y L ++GK
Sbjct: 663 LLNACRIHRHVELGELAAQHIFELDPN-SVGYYILLCNLYADAGK 706
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 4e-06
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 302 VSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSV 336
V+Y I+ C+ + + KEM+E+G +P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 3e-05
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 478 TYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKML 517
TY +L+ G + GK+E A F EM +GI P TY +L
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSIL 44
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 26/212 (12%)
Query: 211 GRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQI-- 268
G D A E + +K G++ T + S LM + + A +++ + K I L +
Sbjct: 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS-IKLRPTVST 721
Query: 269 FNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQ 328
N LI C+ ++ A + + EM + G P+ ++Y+ + R+ D D L + +
Sbjct: 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781
Query: 329 EKGCKPSVITY-------------------TIVMHALGKAKQINE----ALKVYEKMKSD 365
E G KP+++ +V G+ + N+ AL VY + S
Sbjct: 782 EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841
Query: 366 DCLPDTSFYSSLIFILSKAGRVKDANEIFEDM 397
LP S ++ L N + E++
Sbjct: 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENL 873
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 6e-05
Identities = 17/33 (51%), Positives = 28/33 (84%)
Query: 374 YSSLIFILSKAGRVKDANEIFEDMKKQGVVPNV 406
Y++LI L KAGRV++A E+F++MK++G+ P+V
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (94), Expect = 7e-05
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 400 QGVVPNVLTYNTMISSACARSEEENALKLLQKME 433
+G+ P+V+TYNT+I C + A++LL +ME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 14/163 (8%)
Query: 199 TMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEF 258
T S ++R R + A +A G+ + G D A + L+D K +E A VF
Sbjct: 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF--- 383
Query: 259 KDCIPLSSQI-FNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDF 317
D +P + I +N LI G+ + A + + M +G +P+ V++ + CR +
Sbjct: 384 -DRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA-CR---Y 438
Query: 318 RKVDDTLKEM-----QEKGCKPSVITYTIVMHALGKAKQINEA 355
+ + E+ + KP + Y ++ LG+ ++EA
Sbjct: 439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 478 TYASLVRGLIESGKLELACSFFEEMISKGIVP 509
TY +L+ GL ++G++E A F+EM +GI P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 1e-04
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 374 YSSLIFILSKAGRVKDANEIFEDMKKQGVVP 404
Y++L+ L+KAG A + E+MK G+ P
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 337 ITYTIVMHALGKAKQINEALKVYEKMKSDDC 367
+TY ++ KA ++ EAL+++++MK
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 3e-04
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 199 TMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVK 244
T +T++ + G+ ++A++ F MKK G++ + S+L+D L K
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 3e-04
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 269 FNILIHGWCKTRKVDDAQKAMKEM 292
+N LI G C+ +VD+A + + EM
Sbjct: 10 YNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 4e-04
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 301 VVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKP 334
+ +Y + + D L+EM+ G KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (87), Expect = 6e-04
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 365 DDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMK 398
PD Y++LI L +AGRV +A E+ ++M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 7e-04
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 302 VSYTCFIEHYCREKDFRKVDDTLKEMQEKGC 332
V+Y I YC+ + + KEM+EKG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 14/29 (48%), Positives = 24/29 (82%)
Query: 374 YSSLIFILSKAGRVKDANEIFEDMKKQGV 402
Y+SLI KAG++++A E+F++MK++GV
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 268 IFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDV 301
+N LI G CK +V++A + KEM ++G PDV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.003
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 336 VITYTIVMHALGKAKQINEALKVYEKMKSDDCLP 369
+ TY ++ AL KA + AL V E+MK+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 71/335 (21%), Positives = 121/335 (36%), Gaps = 58/335 (17%)
Query: 180 MWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLM 239
M EL +DE + YV+L + +R V G + A GV LS+
Sbjct: 77 MQELRVPVDE--DAYVALFRLCE-WKRAVEEGSRVCSR-ALSSHPSLGVRLGNAMLSMF- 131
Query: 240 DTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSP 299
V+ + HA+ VF + + S +N+L+ G+ K D+A M G P
Sbjct: 132 ---VRFGELVHAWYVFGKMPERDLFS---WNVLVGGYAKAGYFDEALCLYHRMLWAGVRP 185
Query: 300 DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVY 359
DV ++ C V+ G + +V+
Sbjct: 186 DVYTFPC-----------------------------------VLRTCGGIPDLARGREVH 210
Query: 360 EKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACAR 419
+ D ++LI + K G V A +F+ M ++ + +++N MIS
Sbjct: 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFEN 266
Query: 420 SEEENALKLLQKMEEDLCKPDCETYAPLLKMCC----RKKRMKVLNFLLTHMFKNDVSMD 475
E L+L M E PD T ++ C + ++ +++ F DVS+
Sbjct: 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV- 325
Query: 476 AGTYASLVRGLIESGKLELACSFFEEMISKGIVPY 510
SL++ + G A F M +K V +
Sbjct: 326 ---CNSLIQMYLSLGSWGEAEKVFSRMETKDAVSW 357
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.004
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 199 TMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDT 232
T +T++ L + GR ++A+E F+ MK+ G+E D
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.8 bits (81), Expect = 0.004
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 478 TYASLVRGLIESGKLELACSFFEEMISKGIVP 509
TY +L+ L ++G +LA + EEM + G+ P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 546 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.85 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.82 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.75 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.71 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.71 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.68 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.67 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.63 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.62 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.58 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.58 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.57 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.56 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.56 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.56 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.55 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.55 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.55 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.54 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.54 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.53 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.5 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.45 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.44 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.43 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.41 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.41 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.4 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.39 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.37 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.36 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.36 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.35 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.35 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.34 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.33 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.32 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.3 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.29 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.27 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.27 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.24 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.23 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.2 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.19 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.15 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.15 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.14 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.13 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.12 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.12 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.1 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.1 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.1 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.07 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.06 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.05 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.05 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.02 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.0 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.98 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.95 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.92 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.88 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.86 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.83 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.82 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.82 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.81 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.78 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.77 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.75 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.75 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.75 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.73 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.72 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.72 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.7 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.68 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.66 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.64 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.63 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.63 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.61 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.59 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.57 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.56 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.55 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.55 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.54 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.54 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.53 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.53 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.52 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.51 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.48 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.44 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.43 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.41 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.38 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.37 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.37 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.33 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.28 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.27 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.22 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.18 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.17 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.16 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.16 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.12 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.1 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.06 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.03 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.03 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.01 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.97 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.96 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.96 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.93 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.89 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.89 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.85 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.84 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.76 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.73 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.73 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.72 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.7 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.69 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.67 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.63 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.63 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.62 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.62 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.6 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.58 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.56 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.53 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.48 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.46 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.44 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.42 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.41 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.4 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.4 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.36 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.34 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.33 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.31 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.27 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.26 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.26 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.25 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.24 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.23 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.17 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.16 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.13 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.12 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.12 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.07 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.05 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.04 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.03 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.99 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.95 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.9 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.86 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.84 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.82 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.77 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.77 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.75 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.74 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.73 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.73 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.66 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.61 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.56 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.5 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.5 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.48 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.45 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.43 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.39 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.38 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.36 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.36 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.35 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.27 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.24 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.23 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.11 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.99 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.99 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.97 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.93 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.88 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.85 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.84 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.82 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.74 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.68 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.65 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.65 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.63 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.54 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.54 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.52 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.51 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.51 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.46 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.43 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.36 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.28 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.23 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.19 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.17 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.17 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.16 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.09 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.0 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.92 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.9 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.86 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.68 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.58 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.56 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.48 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.33 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.32 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.31 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.05 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.96 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.74 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.74 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.54 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.54 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.53 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.46 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.42 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.24 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.78 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.66 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.61 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.49 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.47 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.25 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.76 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 91.66 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.3 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.6 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.58 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.35 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.22 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.96 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.94 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 89.74 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 89.74 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.65 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.59 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.52 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.5 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.38 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.71 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.65 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 88.54 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 88.25 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.2 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.11 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 88.04 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 87.81 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.79 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 87.55 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 86.98 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.83 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 86.58 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.39 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 85.99 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.49 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 85.27 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 84.21 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.19 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 83.18 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.0 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.28 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 81.71 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 81.66 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.18 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 81.11 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 81.07 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 80.5 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.45 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-60 Score=503.46 Aligned_cols=414 Identities=21% Similarity=0.276 Sum_probs=335.3
Q ss_pred CCHHHHHHHHHhhc--CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHH
Q 009011 125 VSNSLVEQTLRRFS--NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMST 202 (546)
Q Consensus 125 ~~~~~~~~~l~~~~--~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~ 202 (546)
|+..++..+++.|+ ++.+.|+.+|..+.. .|+.||..+|+.||.+|++.|++++|.++|++|.+.+ ..|+..+|+.
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~-~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-v~PdvvTyna 512 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQE-AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-VEANVHTFGA 512 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHH
Confidence 56666777777765 366677777777753 6788888888888888888888888888888888766 7788888888
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHhc
Q 009011 203 IMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD---CIPLSSQIFNILIHGWCKT 279 (546)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~li~~~~~~ 279 (546)
+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. ++.||..+|++||.+|++.
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~ 592 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence 8888888888888888888888888888888888888888888888888888888753 4677888888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 280 RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVY 359 (546)
Q Consensus 280 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 359 (546)
|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009011 360 EKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKP 439 (546)
Q Consensus 360 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 439 (546)
++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----c-------------------CChHHHH
Q 009011 440 DCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIE----S-------------------GKLELAC 496 (546)
Q Consensus 440 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~-------------------g~~~~A~ 496 (546)
|..||+.++.+|++.|+++.|.+++++|.+.|+.||..+|+.++..|.+ + +..++|.
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al 832 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL 832 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH
Confidence 8888888888888888888888888888888888888888888765331 1 2245688
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHH
Q 009011 497 SFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHA 540 (546)
Q Consensus 497 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 540 (546)
.+|++|++.|+.||..||+.++.+++..+..+.+..+++.|...
T Consensus 833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~ 876 (1060)
T PLN03218 833 MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS 876 (1060)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC
Confidence 88888888888888888888887777777777777777666533
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-59 Score=492.92 Aligned_cols=423 Identities=18% Similarity=0.293 Sum_probs=358.6
Q ss_pred CChHHHHHHHhcCCCC-CCHHHHHHHHHhhc--CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHH
Q 009011 109 QSPDKVVEALKGCGVS-VSNSLVEQTLRRFS--NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVK 185 (546)
Q Consensus 109 ~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~~--~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~ 185 (546)
..+.++++.|...|+. ++.-....+++.|. +....|+.+|..+. .||..+|+.++.+|++.|+++.|.++|+
T Consensus 387 ~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~ 461 (1060)
T PLN03218 387 KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-----NPTLSTFNMLMSVCASSQDIDGALRVLR 461 (1060)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-----CCCHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 3455677888877764 44444455666654 35677787777664 2888899999999999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhc-CCCC
Q 009011 186 EMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD-CIPL 264 (546)
Q Consensus 186 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~ 264 (546)
+|.+.+ ..++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. ++.|
T Consensus 462 ~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P 540 (1060)
T PLN03218 462 LVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP 540 (1060)
T ss_pred HHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC
Confidence 988866 78888899999999999999999999999998888888999999999999999999999999988875 7888
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 009011 265 SSQIFNILIHGWCKTRKVDDAQKAMKEMFQ--QGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIV 342 (546)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 342 (546)
|..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+
T Consensus 541 D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsL 620 (1060)
T PLN03218 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA 620 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHH
Confidence 888999999999999999999999998876 578888889999999999999999999999999988888888899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 009011 343 MHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEE 422 (546)
Q Consensus 343 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 422 (546)
|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 621 I~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ 700 (1060)
T PLN03218 621 VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW 700 (1060)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999888888898899999999999999999999999998888888999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009011 423 ENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEM 502 (546)
Q Consensus 423 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 502 (546)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|
T Consensus 701 eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M 780 (1060)
T PLN03218 701 KKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQA 780 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999988888889999999999999999999999999999988888899999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 009011 503 ISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAH 539 (546)
Q Consensus 503 ~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 539 (546)
.+.|+.||..+|+.++..|. ++++++.++.+.+..
T Consensus 781 ~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~ 815 (1060)
T PLN03218 781 KEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVS 815 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhh
Confidence 88888999888888886654 345666555544433
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-59 Score=501.84 Aligned_cols=477 Identities=16% Similarity=0.182 Sum_probs=378.6
Q ss_pred hhhhhhhhhccCCCCccccccCCCCCCCCCCCCcccccCCCCCCCCCcccccccccccccccccccccccccCCCCchhh
Q 009011 17 QKHAKIYYLCYLSCNPLCTTAESPSSTESPSLPSWIKFFDSQSPDEDFVIPSLAGWVESHRLNEKSRISSRVLSENHETD 96 (546)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (546)
++|++.++.+. .+++...|+....|.+.+.+..+.+.|+.++.++.++|+++.+.+.+.+.
T Consensus 107 ~~~~~~~~~~~-~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~------------------ 167 (857)
T PLN03077 107 RVCSRALSSHP-SLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGY------------------ 167 (857)
T ss_pred HHHHHHHHcCC-CCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCC------------------
Confidence 55666665554 35556666666677788888888888888887777777766553333221
Q ss_pred HHHHHHHHHhcCCChHHHHHHHhcCCCCCCHHHHHHHHHhhcC--ChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcC
Q 009011 97 VDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSN--DLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKS 174 (546)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~ 174 (546)
...+.+++..|...|+.|+..++..+++.|.. +...+..++..+. +.|+.||..+|+.||.+|+++
T Consensus 168 -----------~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~n~Li~~y~k~ 235 (857)
T PLN03077 168 -----------FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV-RFGFELDVDVVNALITMYVKC 235 (857)
T ss_pred -----------HHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHH-HcCCCcccchHhHHHHHHhcC
Confidence 12344577788888999999999999999875 4555677777765 478999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 009011 175 KKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKV 254 (546)
Q Consensus 175 ~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 254 (546)
|+++.|.++|++|.. ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++
T Consensus 236 g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l 310 (857)
T PLN03077 236 GDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREM 310 (857)
T ss_pred CCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHH
Confidence 999999999999865 356789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 009011 255 FLEFKD-CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCK 333 (546)
Q Consensus 255 ~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 333 (546)
+..+.+ ++.+|..+||+|+.+|++.|++++|.++|++|.. ||..+|+.+|.+|++.|++++|.++|++|.+.|+.
T Consensus 311 ~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~ 386 (857)
T PLN03077 311 HGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386 (857)
T ss_pred HHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 988876 7889999999999999999999999999999864 68899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009011 334 PSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMI 413 (546)
Q Consensus 334 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 413 (546)
||..||+.++.+|++.|++++|.++++.+.+.|+.|+..+|++||.+|++.|++++|.++|++|.+ +|..+|+.+|
T Consensus 387 Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi 462 (857)
T PLN03077 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSII 462 (857)
T ss_pred CCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998864 5778888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---------------------
Q 009011 414 SSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDV--------------------- 472 (546)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--------------------- 472 (546)
.+|++.|+.++|+++|++|.+ ++.||..||+.++.+|++.|+++.+.+++..+.+.|+
T Consensus 463 ~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~ 541 (857)
T PLN03077 463 AGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN 541 (857)
T ss_pred HHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHH
Confidence 888888888888888888875 4677776666655555544444444444444433332
Q ss_pred ---------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHH
Q 009011 473 ---------SMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLA 538 (546)
Q Consensus 473 ---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 538 (546)
.+|..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|+.+++.++++.|.
T Consensus 542 ~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 542 YAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 345556666666666666666666666666666666666666666666666666666666666665
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-57 Score=481.16 Aligned_cols=416 Identities=17% Similarity=0.219 Sum_probs=379.7
Q ss_pred ChHHHHHHHhcC-CCCCCHHHHHHHHHhhcC--ChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 009011 110 SPDKVVEALKGC-GVSVSNSLVEQTLRRFSN--DLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKE 186 (546)
Q Consensus 110 ~~~~~~~~l~~~-~~~~~~~~~~~~l~~~~~--~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~ 186 (546)
.+.++++.|... +..|+..++..++.+|.. +.+.+..++..+. +.|+.||..+|+.|+++|++.|+++.|.++|++
T Consensus 105 ~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~-~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 183 (697)
T PLN03081 105 EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVE-SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE 183 (697)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence 345677778764 478999999999999864 5667788887775 479999999999999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhc-CCCCC
Q 009011 187 MDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD-CIPLS 265 (546)
Q Consensus 187 m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~ 265 (546)
|.+ ++..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|..+.+.+++..+.+ +..+|
T Consensus 184 m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d 258 (697)
T PLN03081 184 MPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258 (697)
T ss_pred CCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcc
Confidence 965 568899999999999999999999999999999999999999999999999999999999988766 78889
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009011 266 SQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHA 345 (546)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~ 345 (546)
..+||+|+.+|+++|++++|.++|++|.. +|.++||.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a 334 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999974 59999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 346 LGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENA 425 (546)
Q Consensus 346 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 425 (546)
|++.|++++|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ ||..+||+||.+|+++|+.++|
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A 410 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKA 410 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999999999999999999999974 7899999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009011 426 LKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK-NDVSMDAGTYASLVRGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 426 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (546)
.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++|
T Consensus 411 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-- 488 (697)
T PLN03081 411 VEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-- 488 (697)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC--
Confidence 99999999999999999999999999999999999999999986 799999999999999999999999999998876
Q ss_pred CCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 505 KGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 505 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
++.|+..+|+.++.+|...|+.+.++++++.+.+.+.
T Consensus 489 -~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p 525 (697)
T PLN03081 489 -PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP 525 (697)
T ss_pred -CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence 6788888888888888877777777777777655443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-58 Score=494.66 Aligned_cols=477 Identities=15% Similarity=0.155 Sum_probs=431.5
Q ss_pred hhhhhhhhhccCCCCccccccCCCCCCCCCCCCcccccCCCCCCCCCcccccccccccccccccccccccccCCCCchhh
Q 009011 17 QKHAKIYYLCYLSCNPLCTTAESPSSTESPSLPSWIKFFDSQSPDEDFVIPSLAGWVESHRLNEKSRISSRVLSENHETD 96 (546)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (546)
++|++.++.|.. ++++..++....|...+.+..+.++|+.++.++..+|+++...+...+.
T Consensus 208 ~~~~~~~~~g~~-~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~------------------ 268 (857)
T PLN03077 208 EVHAHVVRFGFE-LDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGE------------------ 268 (857)
T ss_pred HHHHHHHHcCCC-cccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCC------------------
Confidence 678888887754 6777777777778888888888888888877777777666543333221
Q ss_pred HHHHHHHHHhcCCChHHHHHHHhcCCCCCCHHHHHHHHHhhcC--ChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcC
Q 009011 97 VDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSN--DLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKS 174 (546)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~ 174 (546)
...+.+++..|...|+.|+..++..++.+|.. +.+.+.+++..+.. .|+.||..+||.||.+|++.
T Consensus 269 -----------~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~-~g~~~d~~~~n~Li~~y~k~ 336 (857)
T PLN03077 269 -----------CLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK-TGFAVDVSVCNSLIQMYLSL 336 (857)
T ss_pred -----------HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH-hCCccchHHHHHHHHHHHhc
Confidence 22345688889999999999999999999864 67778888888864 79999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 009011 175 KKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKV 254 (546)
Q Consensus 175 ~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 254 (546)
|++++|.++|++|.. ++..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++
T Consensus 337 g~~~~A~~vf~~m~~-----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l 411 (857)
T PLN03077 337 GSWGEAEKVFSRMET-----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411 (857)
T ss_pred CCHHHHHHHHhhCCC-----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHH
Confidence 999999999999964 457899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 009011 255 FLEFKD-CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCK 333 (546)
Q Consensus 255 ~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 333 (546)
++.+.+ +..++..+||+|+.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|..+|++|.. ++.
T Consensus 412 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~ 486 (857)
T PLN03077 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLK 486 (857)
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCC
Confidence 999877 7899999999999999999999999999999975 5899999999999999999999999999986 599
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009011 334 PSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMI 413 (546)
Q Consensus 334 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 413 (546)
||..||+.++.+|++.|+++.+.+++..+.+.|+.+|..+++++|++|++.|++++|.++|+.+ .||..+||++|
T Consensus 487 pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI 561 (857)
T PLN03077 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILL 561 (857)
T ss_pred CCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987 48999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHcCCh
Q 009011 414 SSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMF-KNDVSMDAGTYASLVRGLIESGKL 492 (546)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~ 492 (546)
.+|+++|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|. +.|+.|+..+|+.++.+|++.|++
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~ 641 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL 641 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999999999999999999999999999 689999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 493 ELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 493 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
++|.+++++| .+.||..+|.+++.+|...|+.+.++...+.+.+...
T Consensus 642 ~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p 688 (857)
T PLN03077 642 TEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDP 688 (857)
T ss_pred HHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Confidence 9999999999 4889999999999988777777777776666655443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-54 Score=458.36 Aligned_cols=415 Identities=19% Similarity=0.230 Sum_probs=392.7
Q ss_pred hHHHHHHHhcCCCCCCHHHHHHHHHhhc--CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 009011 111 PDKVVEALKGCGVSVSNSLVEQTLRRFS--NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMD 188 (546)
Q Consensus 111 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~--~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~ 188 (546)
..++...+...|+.|+..++..++..+. ++.+.|.++|+.+. .||..+||.++.+|++.|++++|.++|++|.
T Consensus 142 a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~ 216 (697)
T PLN03081 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMW 216 (697)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3567777888899999999999999885 47888999999874 4899999999999999999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHH
Q 009011 189 ELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQI 268 (546)
Q Consensus 189 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 268 (546)
+.+ ..++..+|+.++.++++.|..+.+.+++..+.+.|+.+|..+++.|+++|++.|++++|.++|++|.. +|..+
T Consensus 217 ~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt 292 (697)
T PLN03081 217 EDG-SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVA 292 (697)
T ss_pred HhC-CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhH
Confidence 977 88999999999999999999999999999999999999999999999999999999999999999974 68999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009011 269 FNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGK 348 (546)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~ 348 (546)
||+|+.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.+|.+|++
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009011 349 AKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKL 428 (546)
Q Consensus 349 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 428 (546)
.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|+.++|.++
T Consensus 373 ~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~ 448 (697)
T PLN03081 373 WGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448 (697)
T ss_pred CCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHH
Confidence 9999999999999964 688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 009011 429 LQKMEE-DLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGI 507 (546)
Q Consensus 429 ~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 507 (546)
|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|..+++++. ++
T Consensus 449 f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~ 523 (697)
T PLN03081 449 FQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GM 523 (697)
T ss_pred HHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CC
Confidence 999976 699999999999999999999999999998876 578999999999999999999999999999997 45
Q ss_pred CCC-HHHHHHHHHHHHhcChhhHHHHHHHHHHHHhhh
Q 009011 508 VPY-HSTYKMLEEKLEKKRLGNAKERINKLLAHAKEQ 543 (546)
Q Consensus 508 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 543 (546)
.|+ ..+|..+++.|.+.|++++|.++++.|++.+-+
T Consensus 524 ~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 524 GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 564 679999999999999999999999999987754
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-23 Score=231.82 Aligned_cols=385 Identities=11% Similarity=0.063 Sum_probs=269.5
Q ss_pred ChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009011 140 DLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEA 219 (546)
Q Consensus 140 ~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 219 (546)
+.+.|...|..+... .+.+..++..+...+.+.|++++|..+|+++.. . .+.+...+..++..+.+.|++++|+++
T Consensus 514 ~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 589 (899)
T TIGR02917 514 NPDDAIQRFEKVLTI--DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE-L-NPQEIEPALALAQYYLGKGQLKKALAI 589 (899)
T ss_pred CHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CccchhHHHHHHHHHHHCCCHHHHHHH
Confidence 444555555544421 233455566666666666666666666666655 2 344555566666666666666666666
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009011 220 FRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSP 299 (546)
Q Consensus 220 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 299 (546)
++.+.+.. +.+..++..+..++...|++++|...|+.+....|.+...+..+...+.+.|++++|..+++++.+....
T Consensus 590 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 667 (899)
T TIGR02917 590 LNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPD- 667 (899)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Confidence 66665532 4556666667777777777777777776666555566666677777777777777777777776655322
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009011 300 DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIF 379 (546)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 379 (546)
+..++..+...+...|++++|.++++.+.+.+ +.+...+..+...+.+.|++++|.+.|+.+...+ |+..++..+..
T Consensus 668 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 744 (899)
T TIGR02917 668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHR 744 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHH
Confidence 45666777777777777777777777776654 3355666667777777777777777777777654 34456666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 009011 380 ILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKV 459 (546)
Q Consensus 380 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 459 (546)
++.+.|++++|.+.++.+.+.. +.+...+..+...|...|++++|..+|+++.+.. +.+...+..+...+...|+ ++
T Consensus 745 ~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~ 821 (899)
T TIGR02917 745 ALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PR 821 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HH
Confidence 7778888888888887777644 3366777777778888888888888888887764 4567777888888888888 77
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHH
Q 009011 460 LNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLA 538 (546)
Q Consensus 460 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 538 (546)
|..+++++.+..+. +..++..+...+...|++++|.++++++++.+.. +..++..+..++.+.|+.++|.++++.|.
T Consensus 822 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 822 ALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888888775444 5667777888888899999999999999987643 78888888899999999999999888774
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-22 Score=223.67 Aligned_cols=389 Identities=13% Similarity=0.061 Sum_probs=224.0
Q ss_pred ChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009011 140 DLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEA 219 (546)
Q Consensus 140 ~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 219 (546)
+.+.|...|..+... .+.+...+..+...+...|++++|.+.|+++.+ . .+.+..++..+...+.+.|++++|..+
T Consensus 480 ~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 555 (899)
T TIGR02917 480 DLAKAREAFEKALSI--EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLT-I-DPKNLRAILALAGLYLRTGNEEEAVAW 555 (899)
T ss_pred CHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h-CcCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444444444321 122333444455555555555555555555544 2 334445555555555555555555555
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009011 220 FRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSP 299 (546)
Q Consensus 220 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 299 (546)
|+++.+.+ +.+...+..+...+...|+.++|.++++.+....|.+..+|..+...+.+.|++++|...|+++.+....
T Consensus 556 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 633 (899)
T TIGR02917 556 LEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD- 633 (899)
T ss_pred HHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 55554432 3344445555555555566666666655555555555556666666666666666666666665554321
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009011 300 DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIF 379 (546)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 379 (546)
+...+..+...+.+.|++++|...++.+.+.. +.+..++..++..+...|++++|.++++.+.+.+ +.+...+..+..
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 711 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGD 711 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHH
Confidence 44455555566666666666666666655542 2244555566666666666666666666665554 335555566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 009011 380 ILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKV 459 (546)
Q Consensus 380 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 459 (546)
.+.+.|++++|.+.|+.+.+.+ |+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...|...|+.++
T Consensus 712 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~ 788 (899)
T TIGR02917 712 LYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDK 788 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 6666666666666666666543 333555556666666666666666666666543 4455666666666667777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 009011 460 LNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAH 539 (546)
Q Consensus 460 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 539 (546)
|...++++.+..+. +..+++.+...+...|+ .+|...++++.+.. +-+..++..+...+...|++++|.++++.+.+
T Consensus 789 A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 789 AIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777777665443 56666667777777777 66777777766542 22344555666667777777777777777765
Q ss_pred Hhh
Q 009011 540 AKE 542 (546)
Q Consensus 540 ~~~ 542 (546)
...
T Consensus 866 ~~~ 868 (899)
T TIGR02917 866 IAP 868 (899)
T ss_pred hCC
Confidence 543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-20 Score=186.99 Aligned_cols=305 Identities=13% Similarity=0.092 Sum_probs=155.1
Q ss_pred HHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHcc
Q 009011 169 DVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKD---TRALSVLMDTLVKG 245 (546)
Q Consensus 169 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~ 245 (546)
..+...|++++|.+.|+++.+ . .+.+..++..+...+...|++++|+++++.+.+.+..++ ..++..+...+.+.
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLK-V-DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHh-c-CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344555666666666666665 2 444555666666666666666666666666654321111 12334444445555
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009011 246 NSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLK 325 (546)
Q Consensus 246 g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~ 325 (546)
|++++|..+|+++.+..+.+..+++.++..+.+.|++++|.+.++.+.+.+..++...
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 5555555555544443334444444455555555555555555554444322211100
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009011 326 EMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPN 405 (546)
Q Consensus 326 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 405 (546)
....+..+...+.+.|++++|.+.|+++.+.. +.+...+..+...|.+.|++++|.++++++.+.+....
T Consensus 179 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 179 ---------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred ---------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 01123334444555555555555555555432 22344445555555555666666666555554322111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 009011 406 VLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRG 485 (546)
Q Consensus 406 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 485 (546)
..+++.++.+|...|++++|...++++.+. .|+...+..+...+.+.|++++|..+++++.+. .|+...++.++..
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~ 324 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHH
Confidence 234555555566666666666666665554 344444455555566666666666666655543 3455555555555
Q ss_pred HHH---cCChHHHHHHHHHHHHCCCCCCH
Q 009011 486 LIE---SGKLELACSFFEEMISKGIVPYH 511 (546)
Q Consensus 486 ~~~---~g~~~~A~~~~~~m~~~g~~p~~ 511 (546)
+.. .|+.+++..++++|.++++.|++
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred hhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 443 34566666666666655544443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-20 Score=187.10 Aligned_cols=312 Identities=13% Similarity=0.130 Sum_probs=251.1
Q ss_pred CCCCCHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCC---CHH
Q 009011 122 GVSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYV---SLA 198 (546)
Q Consensus 122 ~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~---~~~ 198 (546)
........+..+.....++.+.|+..|..+... .+.+..++..+...+...|++++|..+++.+.... ... ...
T Consensus 32 ~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~ 108 (389)
T PRK11788 32 SNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-DLTREQRLL 108 (389)
T ss_pred hhhccHHHHHHHHHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-CCCHHHHHH
Confidence 455666666677666778899999999999853 34566789999999999999999999999998732 222 235
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC-----HHHHHHHH
Q 009011 199 TMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLS-----SQIFNILI 273 (546)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~li 273 (546)
.+..+...|.+.|++++|+.+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+....+.+ ...+..+.
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 68889999999999999999999998753 5678889999999999999999999999987643333 22456778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 274 HGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQIN 353 (546)
Q Consensus 274 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 353 (546)
..+.+.|++++|...|+++.+.... +...+..+...|.+.|++++|.++++++.+.+......++..++.+|.+.|+++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 8888999999999999999876432 466778888899999999999999999887643333456788888999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 009011 354 EALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACA---RSEEENALKLLQ 430 (546)
Q Consensus 354 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~ 430 (546)
+|...++++.+.. |+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..+++
T Consensus 267 ~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 267 EGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred HHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 9999999888764 55566688888899999999999999888765 5788888888877664 458888999999
Q ss_pred HHHHCCCCCCHH
Q 009011 431 KMEEDLCKPDCE 442 (546)
Q Consensus 431 ~m~~~~~~p~~~ 442 (546)
+|.+.+++|++.
T Consensus 343 ~~~~~~~~~~p~ 354 (389)
T PRK11788 343 DLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHhCCCC
Confidence 998877777765
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-18 Score=179.69 Aligned_cols=330 Identities=12% Similarity=0.039 Sum_probs=184.1
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccC
Q 009011 167 MVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGN 246 (546)
Q Consensus 167 ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 246 (546)
++..+.+.|++++|..+++.... . .+.+...+..++......|++++|++.|+++.+.. +.+...+..+...+...|
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~-~-~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVL-T-AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHH-h-CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 34445556666666666666655 2 44445555555555556666666666666665542 344455555556666666
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 009011 247 SVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKE 326 (546)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~ 326 (546)
+.++|...+++.....|.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++.
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 6666666666665555555666666666666666666666666655544332 12222222 235556666666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCC
Q 009011 327 MQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKD----ANEIFEDMKKQGV 402 (546)
Q Consensus 327 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~ 402 (546)
+.+....++...+..+..++.+.|++++|...++++.+.. +.+...+..+...|...|++++ |...|++..+...
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P 281 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS 281 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence 5554322333334444555566666666666666666543 3345555556666666666654 5666666655432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 009011 403 VPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASL 482 (546)
Q Consensus 403 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 482 (546)
.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|...++.+.+.++. +...+..+
T Consensus 282 -~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~ 358 (656)
T PRK15174 282 -DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYA 358 (656)
T ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHH
Confidence 244555566666666666666666666665542 223344555555666666666666666666654322 22223334
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC
Q 009011 483 VRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 483 i~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
..++...|++++|...|++..+.
T Consensus 359 a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 45556666666666666666544
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-17 Score=183.02 Aligned_cols=387 Identities=10% Similarity=0.017 Sum_probs=235.3
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHH------------HHHHH
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMS------------TIMRR 206 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~------------~li~~ 206 (546)
++.+.|+..|..+... .+.+..++..|..+|.+.|++++|+..|++..+..+.......|. .....
T Consensus 283 g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 283 GQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 3555666666666532 233556666677777777777777777776665331211111111 12334
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009011 207 LVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQ 286 (546)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 286 (546)
+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|.+.|++.....|.+...+..+...|. .++.++|.
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~ 438 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKAL 438 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHH
Confidence 556677777777777766543 3445556666666777777777777776666555555555544444442 22334444
Q ss_pred HHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009011 287 KAMKEMFQQGFS--------PDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKV 358 (546)
Q Consensus 287 ~~~~~m~~~g~~--------~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 358 (546)
.+++.+...... .....+..+...+...|++++|.+.+++..+.... +...+..+...|.+.|++++|...
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 443332211000 00112223344455566777777777666655322 444555666666667777777777
Q ss_pred HHHHHhCCCCCCHHHHHH--------------------------------------------HHHHHHhcCCHHHHHHHH
Q 009011 359 YEKMKSDDCLPDTSFYSS--------------------------------------------LIFILSKAGRVKDANEIF 394 (546)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~--------------------------------------------li~~~~~~g~~~~A~~~~ 394 (546)
++++.+.. +.+...+.. +...+...|+.++|..++
T Consensus 518 l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 76665543 112222222 233444555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 009011 395 EDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSM 474 (546)
Q Consensus 395 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 474 (546)
+. .+.+...+..+...+.+.|+.++|++.|++..+.. +.+...+..+...+...|+.++|.+.++...+....
T Consensus 597 ~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~- 669 (1157)
T PRK11447 597 RQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND- 669 (1157)
T ss_pred Hh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-
Confidence 41 12355566677788888999999999999988864 446778888888899999999999999987765433
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcChhhHHHHHHHHHH
Q 009011 475 DAGTYASLVRGLIESGKLELACSFFEEMISKGI--VP---YHSTYKMLEEKLEKKRLGNAKERINKLLA 538 (546)
Q Consensus 475 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 538 (546)
+...+..+..++...|++++|.++++++....- .| +...+..+...+...|+.++|.+.++...
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 556677788888889999999999999886532 12 22455566777888899999998888764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-17 Score=169.47 Aligned_cols=256 Identities=7% Similarity=0.036 Sum_probs=199.4
Q ss_pred CCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009011 280 RKVDDAQKAMKEMFQQG-FSP-DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALK 357 (546)
Q Consensus 280 g~~~~a~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 357 (546)
+++++|.+.|+...+.+ ..| ....|+.+...+...|++++|+..+++..+.. +-+...|..+...+...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 57889999999988764 223 45667788888889999999999999988763 2245678888888899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009011 358 VYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLC 437 (546)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 437 (546)
.|+++.+.. +.+..+|..+...+...|++++|...|++..+... .+...+..+...+.+.|++++|+..+++..+..
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 463 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF- 463 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 999988765 44678888899999999999999999999987642 256677778888899999999999999988753
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-
Q 009011 438 KPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAG------TYASLVRGLIESGKLELACSFFEEMISKGIVPY- 510 (546)
Q Consensus 438 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 510 (546)
+.+...+..+...+...|++++|...++...+.....+.. .++.....+...|++++|.+++++..+.. |+
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~ 541 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID--PEC 541 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCc
Confidence 4456788888889999999999999999988754432211 11222223344699999999999988654 44
Q ss_pred HHHHHHHHHHHHhcChhhHHHHHHHHHHHHh
Q 009011 511 HSTYKMLEEKLEKKRLGNAKERINKLLAHAK 541 (546)
Q Consensus 511 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 541 (546)
...+..+...+...|+.++|.++++...+..
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 4467788889999999999999888875543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-17 Score=173.23 Aligned_cols=334 Identities=8% Similarity=-0.011 Sum_probs=276.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 009011 200 MSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKT 279 (546)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 279 (546)
...++..+.+.|++++|+.+++...... +-+...+..++.++...|+.++|...++++....|.+...+..+...+...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 3445778889999999999999998764 555666777777888899999999999999988899999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 280 RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVY 359 (546)
Q Consensus 280 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 359 (546)
|++++|...+++....... +...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 9999999999999886432 5678888999999999999999999988776433 33333333 3478899999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHC
Q 009011 360 EKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEEN----ALKLLQKMEED 435 (546)
Q Consensus 360 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~ 435 (546)
+.+.+....++...+..+...+.+.|++++|...++++.+... .+...+..+...+...|++++ |...+++..+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 9988765334555556667888999999999999999998653 367788889999999999986 89999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-H
Q 009011 436 LCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHST-Y 514 (546)
Q Consensus 436 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~ 514 (546)
. +.+...+..+...+...|++++|...+++..+..+. +...+..+..++.+.|++++|...++++.+.+ |+... +
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~ 355 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWN 355 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHH
Confidence 4 445678889999999999999999999999987655 66778889999999999999999999998764 55444 3
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 515 KMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 515 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
..+..++...|+.++|...++..-+...
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 3456678899999999999998866543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-16 Score=175.10 Aligned_cols=367 Identities=11% Similarity=0.025 Sum_probs=277.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC-CHHHH---------
Q 009011 166 TMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEK-DTRAL--------- 235 (546)
Q Consensus 166 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~--------- 235 (546)
.+...+...|++++|+..|++..+ . .+.+..++..+...+.+.|++++|++.|++..+..... ....+
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~-~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVR-A-NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 345677889999999999999988 4 56788999999999999999999999999998753221 11111
Q ss_pred ---HHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 236 ---SVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYC 312 (546)
Q Consensus 236 ---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 312 (546)
......+.+.|++++|...|+++....|.+...+..+...+...|++++|++.|++..+.... +...+..+...|.
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~ 430 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 223456778999999999999999888888999999999999999999999999999986433 4566666777664
Q ss_pred hcCChhHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009011 313 REKDFRKVDDTLKEMQEKGCK--------PSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKA 384 (546)
Q Consensus 313 ~~g~~~~a~~l~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 384 (546)
.++.++|..+++.+...... .....+..+...+...|++++|.+.|++..+.. +-+...+..+...|.+.
T Consensus 431 -~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 431 -QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred -hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 56789999888765432100 012235556778889999999999999999875 33677788899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----------------------------
Q 009011 385 GRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEED----------------------------- 435 (546)
Q Consensus 385 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------------------------- 435 (546)
|++++|...++++.+.... +...+..+...+...++.++|...++.+...
T Consensus 509 G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 9999999999998875322 3333332323333344444444443332110
Q ss_pred ----------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 436 ----------LCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 436 ----------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
..+.+...+..+...+.+.|+.++|...++++.+..+. +...+..++..|...|++++|.+.++...+.
T Consensus 588 ~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 588 KEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred CHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 12345556677888889999999999999999987655 7888999999999999999999999988754
Q ss_pred CCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHH
Q 009011 506 GIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHA 540 (546)
Q Consensus 506 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 540 (546)
. +.+..+...+..++...|+.++|.++++.+...
T Consensus 667 ~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 667 A-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred C-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 2 123455666777888999999999999988654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-18 Score=161.67 Aligned_cols=338 Identities=16% Similarity=0.130 Sum_probs=211.4
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHH-HH
Q 009011 159 HTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRAL-SV 237 (546)
Q Consensus 159 ~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~ 237 (546)
.-.++|..+..++-..|++++|+.+++.+.+ . .+...+.|..+..++...|+.+.|.+.|.+..+. .|+.... +.
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aie-l-~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~ 189 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIE-L-KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSD 189 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHh-c-CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcc
Confidence 3456777777777777788888888777777 3 5556777777777777777777777777776643 3443332 22
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCC----------------------------------CCHHHHHHHHHHHHhcCCHH
Q 009011 238 LMDTLVKGNSVEHAYKVFLEFKDCIP----------------------------------LSSQIFNILIHGWCKTRKVD 283 (546)
Q Consensus 238 ll~~~~~~g~~~~a~~~~~~~~~~~~----------------------------------~~~~~~~~li~~~~~~g~~~ 283 (546)
+...+-..|++++|...+.+.....| .-...|-.|...|...+.++
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcch
Confidence 22233334555555555544443333 33344444444444455555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 284 DAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMK 363 (546)
Q Consensus 284 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 363 (546)
+|...+.+.....+. ..+.+..+...|...|.++-|+..|++..+.... =...|+.+..++-..|++.+|.+.|.+..
T Consensus 270 ~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 270 RAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 554444444433211 2344444445555566666666666666654211 24467777777777777777777777776
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H
Q 009011 364 SDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPN-VLTYNTMISSACARSEEENALKLLQKMEEDLCKPD-C 441 (546)
Q Consensus 364 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~ 441 (546)
... +......+.|...|...|.+++|..+|....+- .|. ...++.|...|-+.|+.++|+..|++.++- .|+ .
T Consensus 348 ~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fA 422 (966)
T KOG4626|consen 348 RLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFA 422 (966)
T ss_pred HhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHH
Confidence 653 334556666777777777777777777776653 233 345677777777777777777777777663 555 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 009011 442 ETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPY 510 (546)
Q Consensus 442 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 510 (546)
..|+.+...|-..|+.+.|.+.+.+.+..++. -....+.|...|-..|++.+|+.-+++... ++||
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPD 488 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPD 488 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCC
Confidence 56777777777777888887777777765443 355677777777788888888888887773 4455
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-16 Score=164.01 Aligned_cols=358 Identities=14% Similarity=0.023 Sum_probs=280.2
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVE 218 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 218 (546)
++.+.|+..|..+.. ..|+...|..+..+|.+.|++++|++.++...+ . .+....+|..+..+|...|++++|+.
T Consensus 141 ~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~-l-~p~~~~a~~~~a~a~~~lg~~~eA~~ 215 (615)
T TIGR00990 141 KDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALE-L-DPDYSKALNRRANAYDGLGKYADALL 215 (615)
T ss_pred CCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHH-c-CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 578889999988863 456788999999999999999999999999988 4 66778899999999999999999987
Q ss_pred HHHHhhhCCC----------------------------C-C---CHHHHHHH---------------------------H
Q 009011 219 AFRGMKKYGV----------------------------E-K---DTRALSVL---------------------------M 239 (546)
Q Consensus 219 ~~~~m~~~~~----------------------------~-~---~~~~~~~l---------------------------l 239 (546)
.|......+- . + ........ +
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (615)
T TIGR00990 216 DLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQL 295 (615)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchH
Confidence 6654422110 0 0 00000000 0
Q ss_pred HH------HHccCCHHHHHHHHHHhhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009011 240 DT------LVKGNSVEHAYKVFLEFKDC---IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEH 310 (546)
Q Consensus 240 ~~------~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 310 (546)
.. ....+++++|.+.|+..... .+.....++.+...+...|++++|...+++..+.... ....|..+...
T Consensus 296 ~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~ 374 (615)
T TIGR00990 296 QLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASM 374 (615)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHH
Confidence 00 01225678888999887652 3455677899999999999999999999999886432 46688888899
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 311 YCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDA 390 (546)
Q Consensus 311 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 390 (546)
+...|++++|...|++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|
T Consensus 375 ~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 375 NLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999998774 3367788899999999999999999999999875 44677888889999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCChHHHHHHH
Q 009011 391 NEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCE------TYAPLLKMCCRKKRMKVLNFLL 464 (546)
Q Consensus 391 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~ll~~~~~~g~~~~a~~~~ 464 (546)
...|++..+.. +.+...|+.+...+...|++++|.+.|++..+.....+.. .++..+..+...|++++|..++
T Consensus 453 ~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~ 531 (615)
T TIGR00990 453 MATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531 (615)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999998753 3357888999999999999999999999988753211111 1122222334479999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009011 465 THMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKG 506 (546)
Q Consensus 465 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 506 (546)
++..+.++. +...+..+...+...|++++|.+.|++..+..
T Consensus 532 ~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 532 EKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 999887654 55678899999999999999999999988653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-16 Score=165.35 Aligned_cols=408 Identities=10% Similarity=0.048 Sum_probs=301.1
Q ss_pred CCCCHHHHHHHHHhh--cCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHH
Q 009011 123 VSVSNSLVEQTLRRF--SNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATM 200 (546)
Q Consensus 123 ~~~~~~~~~~~l~~~--~~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~ 200 (546)
-+.++..|...+... .++.+.|+..+.-+. +.-..+...+..+...+.+.|++++|.++|++..+ . .+.+...+
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~--~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~-~-~P~~~~a~ 86 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYR--VHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALS-L-EPQNDDYQ 86 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHH
Confidence 345555555555543 356666776666554 22345566789999999999999999999999887 3 56778888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 009011 201 STIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTR 280 (546)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 280 (546)
..+...+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++....|.+...+..+...+...|
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 889999999999999999999998763 55566 8888888999999999999999999888889888888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hcCCh---hHHHHHHHHHHHc-CCCCCHH-HHH----
Q 009011 281 KVDDAQKAMKEMFQQGFSPDV------VSYTCFIEHYC-----REKDF---RKVDDTLKEMQEK-GCKPSVI-TYT---- 340 (546)
Q Consensus 281 ~~~~a~~~~~~m~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~a~~l~~~m~~~-g~~p~~~-~~~---- 340 (546)
..++|...++.... .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+.
T Consensus 165 ~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 165 LSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred ChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 99999998887664 2321 11122222222 12234 6788888888854 2223221 111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHH
Q 009011 341 IVMHALGKAKQINEALKVYEKMKSDDCL-PDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVP---NVLTYNTMISSA 416 (546)
Q Consensus 341 ~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~ 416 (546)
..+.++...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|...|+++.+..... .......+..++
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence 1133456779999999999999887632 332 22335778999999999999999987643211 134556667788
Q ss_pred HhcCCHHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 009011 417 CARSEEENALKLLQKMEEDL-----------CKPDC---ETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASL 482 (546)
Q Consensus 417 ~~~g~~~~A~~~~~~m~~~~-----------~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 482 (546)
...|++++|..+++.+.+.. -.|+. ..+..+...+...|+.++|.++++++....+. +...+..+
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~l 399 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDY 399 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 89999999999999988752 11231 34556677888999999999999999887655 68889999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcChhhHHHHHHHHHHHHhhh
Q 009011 483 VRGLIESGKLELACSFFEEMISKGIVPY-HSTYKMLEEKLEKKRLGNAKERINKLLAHAKEQ 543 (546)
Q Consensus 483 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 543 (546)
...+...|++++|.+.+++..+.. |+ ...+......+...|++++|+.+++.+.+..++
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999998654 65 455556666788899999999999998775543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-16 Score=151.77 Aligned_cols=351 Identities=12% Similarity=0.039 Sum_probs=279.9
Q ss_pred CCCCCHHHHHHHHHhh-----cCChhHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHcCCChHHHHHHHHHHHhhCCCCC
Q 009011 122 GVSVSNSLVEQTLRRF-----SNDLTPAFGFFTWAKTQTGYMHTPEM-YNTMVDVLGKSKKFCLMWELVKEMDELNNGYV 195 (546)
Q Consensus 122 ~~~~~~~~~~~~l~~~-----~~~~~~a~~~f~~~~~~~g~~~~~~~-~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~ 195 (546)
.+.+++..+...++.. .++...|..-|..+.+ +.|+... -+-+...+-..|++++|..-+.+..+ . .+.
T Consensus 142 aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~-~-qp~ 216 (966)
T KOG4626|consen 142 AIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE-T-QPC 216 (966)
T ss_pred HHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcchhHHHHhhcccchhHHHHHHHHh-h-CCc
Confidence 4555665555555532 2466667666665542 3343333 23344445557888888888887776 2 444
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
-...|+.|...+-.+|+...|++-|++..+.. +.=...|..|...|...+.++.|...+.+....-|....++..+...
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~i 295 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACI 295 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEE
Confidence 56678889999999999999999999998653 33367899999999999999999999999887778888999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 276 WCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEA 355 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 355 (546)
|...|+++-|.+.+++.++..+. =...|+.|..++-..|+..+|.+.|....... +.-....+.+...+...|.+++|
T Consensus 296 YyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred EeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHH
Confidence 99999999999999999987432 36789999999999999999999999998863 33456788899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 356 LKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPN-VLTYNTMISSACARSEEENALKLLQKMEE 434 (546)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 434 (546)
..+|....+.. +.-....+.|...|-+.|++++|...+++.... .|+ ...|+.+...|-..|+.+.|...+.+.+.
T Consensus 374 ~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 374 TRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred HHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 99999998864 334567889999999999999999999999864 565 45799999999999999999999999988
Q ss_pred CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009011 435 DLCKPD-CETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGL 486 (546)
Q Consensus 435 ~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 486 (546)
.+ |. ...++.|...|-..|++.+|+.-++...+..+. -...|..++.++
T Consensus 451 ~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD-fpdA~cNllh~l 500 (966)
T KOG4626|consen 451 IN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD-FPDAYCNLLHCL 500 (966)
T ss_pred cC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC-CchhhhHHHHHH
Confidence 63 44 578899999999999999999999999986554 234455555444
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-14 Score=132.52 Aligned_cols=412 Identities=16% Similarity=0.169 Sum_probs=291.2
Q ss_pred cCCChHHHHHHHhcCCCCCCHHHHHHHHHhh--cCChhHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHcCCChHHHHHH
Q 009011 107 QYQSPDKVVEALKGCGVSVSNSLVEQTLRRF--SNDLTPAFGFFTWAKTQTGY-MHTPEMYNTMVDVLGKSKKFCLMWEL 183 (546)
Q Consensus 107 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~f~~~~~~~g~-~~~~~~~~~ll~~~~~~~~~~~a~~l 183 (546)
...+.--+.+.|++.|+++++..-..+++.. .++.+.-+.-..|...-..+ ..+..+| +.|.+.+ -+
T Consensus 130 EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--------K~G~vAd--L~ 199 (625)
T KOG4422|consen 130 EVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--------KSGAVAD--LL 199 (625)
T ss_pred ccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--------ccccHHH--HH
Confidence 3334445678899999999999888888753 23333333334444322222 2233344 4454433 23
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhc-CC
Q 009011 184 VKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD-CI 262 (546)
Q Consensus 184 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~ 262 (546)
|+ . .+.+..++.++|.++|+--..+.|.+++++......+.+..+||.+|.+-.-.-+ .+++.+|.. .+
T Consensus 200 ~E-~-----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm 269 (625)
T KOG4422|consen 200 FE-T-----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM 269 (625)
T ss_pred Hh-h-----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc
Confidence 33 2 4566889999999999999999999999999877778999999999887543322 567777766 68
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHH----cCCC
Q 009011 263 PLSSQIFNILIHGWCKTRKVDD----AQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRK-VDDTLKEMQE----KGCK 333 (546)
Q Consensus 263 ~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-a~~l~~~m~~----~g~~ 333 (546)
.||..|+|+++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. +.++
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 8999999999999999998875 45678889999999999999999999999988755 4444444443 2222
Q ss_pred C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009011 334 P----SVITYTIVMHALGKAKQINEALKVYEKMKSDD----CLPD---TSFYSSLIFILSKAGRVKDANEIFEDMKKQGV 402 (546)
Q Consensus 334 p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 402 (546)
| |...|...|..|.+..+.+.|.++..-+.... +.|+ ..-|..+....|+....+.-...|+.|.-.-+
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 2 55667788899999999999999877665321 1222 33466777888889999999999999988777
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-Ch--------H----H-HHHHH----
Q 009011 403 VPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKK-RM--------K----V-LNFLL---- 464 (546)
Q Consensus 403 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~--------~----~-a~~~~---- 464 (546)
.|+..+...++++....|.++-.-+++.+++..|-.-+...-.-++..+++.+ .. . + |..++
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e 509 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYE 509 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999988875444444444444455433 11 0 1 11111
Q ss_pred ---HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHH---HHHHHHHhcChhhHHHHHHHHH
Q 009011 465 ---THMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKG-IVPYHSTYK---MLEEKLEKKRLGNAKERINKLL 537 (546)
Q Consensus 465 ---~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~---~l~~~~~~~g~~~~a~~~~~~m 537 (546)
.+|. .........+...-.+.+.|+.++|.++|.-...++ -.|-....+ .+++.-...+....|..+++.+
T Consensus 510 ~~~~R~r--~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 510 SQPIRQR--AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred hhHHHHH--hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1222 234456677888888999999999999999986654 233344444 4455556677888888888877
Q ss_pred HHH
Q 009011 538 AHA 540 (546)
Q Consensus 538 ~~~ 540 (546)
...
T Consensus 588 ~~~ 590 (625)
T KOG4422|consen 588 SAF 590 (625)
T ss_pred HHc
Confidence 543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-14 Score=148.46 Aligned_cols=393 Identities=11% Similarity=0.038 Sum_probs=278.5
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVE 218 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 218 (546)
+....|+..+..+. ............+...+...|++++|+++|+++.+ . .+.+...+..++..+.+.++.++|++
T Consensus 82 G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~-~-dP~n~~~l~gLa~~y~~~~q~~eAl~ 157 (822)
T PRK14574 82 GRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLK-K-DPTNPDLISGMIMTQADAGRGGVVLK 157 (822)
T ss_pred CCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h-CCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 56667777777665 11122233333345678888888888888888887 3 56667777788888888888888888
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 219 AFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFS 298 (546)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 298 (546)
.++++.+. .|+...+..++..+...++..+|.+.++++.+..|.+...+..++..+.+.|-...|.++..+-... +.
T Consensus 158 ~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~ 234 (822)
T PRK14574 158 QATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VS 234 (822)
T ss_pred HHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cC
Confidence 88888764 5555555445444444566656888888888878888888888888888888888887766654321 11
Q ss_pred CCHHHH------HHHHHHH-----HhcCCh---hHHHHHHHHHHHc-CCCCCH-H----HHHHHHHHHHhcCCHHHHHHH
Q 009011 299 PDVVSY------TCFIEHY-----CREKDF---RKVDDTLKEMQEK-GCKPSV-I----TYTIVMHALGKAKQINEALKV 358 (546)
Q Consensus 299 ~~~~~~------~~li~~~-----~~~g~~---~~a~~l~~~m~~~-g~~p~~-~----~~~~li~~~~~~g~~~~a~~~ 358 (546)
+...-+ ..+++.- ....++ +.|+.-++.+... +..|.. . ...-.+-++...|++.++++.
T Consensus 235 ~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~ 314 (822)
T PRK14574 235 AEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKE 314 (822)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 111001 1111110 011222 3444555555442 222322 1 222445678889999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 359 YEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQG-----VVPNVLTYNTMISSACARSEEENALKLLQKME 433 (546)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 433 (546)
|+.+...+.+....+-.++.++|...+++++|..++..+.... ..++......|.-++...+++++|..+++++.
T Consensus 315 y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~ 394 (822)
T PRK14574 315 YEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYS 394 (822)
T ss_pred HHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 9999998876567788999999999999999999999987643 12344446788999999999999999999998
Q ss_pred HCCC-----------CCC--H-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 009011 434 EDLC-----------KPD--C-ETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFF 499 (546)
Q Consensus 434 ~~~~-----------~p~--~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 499 (546)
+... .|+ - ..+..++..+...|++.+|++.++++....+. |......+...+...|++.+|.+.+
T Consensus 395 ~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~ 473 (822)
T PRK14574 395 EQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQEL 473 (822)
T ss_pred hcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7311 122 2 23455677788999999999999999887766 8999999999999999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcChhhHHHHHHHHHHHHh
Q 009011 500 EEMISKGIVPY-HSTYKMLEEKLEKKRLGNAKERINKLLAHAK 541 (546)
Q Consensus 500 ~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 541 (546)
+..... .|+ ..+......++...|++++|+++.+.+....
T Consensus 474 k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 474 KAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 777644 454 4556677778888899999999987775443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-15 Score=160.37 Aligned_cols=378 Identities=11% Similarity=0.030 Sum_probs=286.8
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHH
Q 009011 156 GYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRAL 235 (546)
Q Consensus 156 g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 235 (546)
....++....-.+.+....|+.++|++++.+... . .+.+...+..+...+.+.|++++|.++|++..+.. +.+....
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~-~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~ 86 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRV-H-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQ 86 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3345556666778889999999999999999986 3 56677789999999999999999999999988753 5567777
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009011 236 SVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK 315 (546)
Q Consensus 236 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 315 (546)
..+..++...|+.++|...++++....|.+.. +..+...+...|+.++|+..++++.+..+. +...+..+...+...|
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence 88888999999999999999999888888888 999999999999999999999999987554 5666667788888899
Q ss_pred ChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHhC-CCCCCHH-HH----H
Q 009011 316 DFRKVDDTLKEMQEKGCKPSV------ITYTIVMHALG-----KAKQI---NEALKVYEKMKSD-DCLPDTS-FY----S 375 (546)
Q Consensus 316 ~~~~a~~l~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~----~ 375 (546)
..++|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ .
T Consensus 165 ~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 165 LSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred ChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 99999998876553 2221 01112222221 12234 7788888888854 1123221 11 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHH
Q 009011 376 SLIFILSKAGRVKDANEIFEDMKKQGVV-PNVLTYNTMISSACARSEEENALKLLQKMEEDLCKP---DCETYAPLLKMC 451 (546)
Q Consensus 376 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~ 451 (546)
..+..+...|++++|...|+.+.+.+.. |+. .-..+..+|...|++++|...|+++.+..... .......+..++
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence 1133456779999999999999987532 332 12224678999999999999999987653111 134566677788
Q ss_pred HhcCChHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009011 452 CRKKRMKVLNFLLTHMFKNDV-----------SMD---AGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKML 517 (546)
Q Consensus 452 ~~~g~~~~a~~~~~~m~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 517 (546)
...|++++|..+++.+.+..+ .|+ ...+..+...+...|+.++|.++++++.... +-+...+..+
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~l 399 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDY 399 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 999999999999999987532 123 2355677788899999999999999998763 3446677888
Q ss_pred HHHHHhcChhhHHHHHHHHHHHHhhh
Q 009011 518 EEKLEKKRLGNAKERINKLLAHAKEQ 543 (546)
Q Consensus 518 ~~~~~~~g~~~~a~~~~~~m~~~~~~ 543 (546)
...+...|+.++|++.++...+..+.
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l~Pd 425 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVLEPR 425 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence 88999999999999999998776543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4e-13 Score=140.68 Aligned_cols=403 Identities=13% Similarity=0.058 Sum_probs=286.0
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 009011 129 LVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTP--EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRR 206 (546)
Q Consensus 129 ~~~~~l~~~~~~~~~a~~~f~~~~~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~ 206 (546)
-...++..-.++...|+..|..+... .|+. .++ .++..++..|+.++|+..+++... . .+........+...
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~-p-~n~~~~~llalA~l 111 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKA---GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS-S-MNISSRGLASAARA 111 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhh---CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc-C-CCCCHHHHHHHHHH
Confidence 33444444456778888888888632 2332 234 888888899999999999998873 2 45566666666778
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009011 207 LVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQ 286 (546)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 286 (546)
+...|++++|+++|+++.+.. +.+...+..++..+...++.++|.+.++++....|. ...+..++..+...++..+|+
T Consensus 112 y~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT-VQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-hHHHHHHHHHHHhcchHHHHH
Confidence 889999999999999998764 455677777788888999999999999988775554 444455555554566666699
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH------HHHHHHH---H--hcCC---H
Q 009011 287 KAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITY------TIVMHAL---G--KAKQ---I 352 (546)
Q Consensus 287 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~------~~li~~~---~--~~g~---~ 352 (546)
+.++++.+..+. +...+..++.++.+.|-...|.++..+-... +.+...-+ ...++.- . ...+ .
T Consensus 190 ~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 190 QASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 999999988543 6777788888899999999888777653322 11111111 0111100 0 1112 3
Q ss_pred HHHHHHHHHHHhC-CCCCC-HH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009011 353 NEALKVYEKMKSD-DCLPD-TS----FYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENAL 426 (546)
Q Consensus 353 ~~a~~~~~~~~~~-~~~~~-~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 426 (546)
+.|+.-++.+... +..|. .. +..-.+-++...|++.++.+.|+.+...+.+.-..+-..+..+|...+++++|.
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 4455555555542 11132 12 223445677889999999999999998775544457788899999999999999
Q ss_pred HHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-------------CCCHH-HHHHHHHHHH
Q 009011 427 KLLQKMEEDL-----CKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDV-------------SMDAG-TYASLVRGLI 487 (546)
Q Consensus 427 ~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-------------~~~~~-~~~~li~~~~ 487 (546)
.+++.+.... ..++......|.-++...+++++|..+++.+.+..+ .||-. .+..++..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 9999997643 123444457889999999999999999999988322 22322 3345577788
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 488 ESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 488 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
-.|+..+|.+.++++.... +-|......+...+...|....|++.++......+
T Consensus 428 ~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P 481 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAP 481 (822)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC
Confidence 9999999999999998663 44677888889999999999999999988766543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-13 Score=123.40 Aligned_cols=372 Identities=17% Similarity=0.219 Sum_probs=268.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC--ChH-HHHHHHHHhhhCC------------
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGG--RYD-DAVEAFRGMKKYG------------ 227 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g--~~~-~A~~~~~~m~~~~------------ 227 (546)
+-|.|+.+. ..|.+.++.-+|+.|.+.+ .+.+...-..+++.-+-.+ ++. .-.+.|-.|.+.|
T Consensus 118 ~E~nL~kmI-S~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 118 TENNLLKMI-SSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred chhHHHHHH-hhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 445555544 4567777777888887766 6777666555554332211 111 1122233332211
Q ss_pred -------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009011 228 -------VEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD-CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSP 299 (546)
Q Consensus 228 -------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 299 (546)
.+.+..++..+|.++|+-...+.|.+++++... ....+..+||.+|.+-.-... .+++.+|....+.|
T Consensus 196 AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 196 ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTP 271 (625)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCC
Confidence 256678999999999999999999999988766 577889999999877554333 78899999999999
Q ss_pred CHHHHHHHHHHHHhcCChhH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhC----CC---
Q 009011 300 DVVSYTCFIEHYCREKDFRK----VDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINE-ALKVYEKMKSD----DC--- 367 (546)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~----a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~----~~--- 367 (546)
|..|+|+++.+..+.|+++. |.+++.+|++-|+.|...+|..+|..+++.++..+ +..++.++... .+
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 99999999999999998765 56788899999999999999999999998887744 55555555432 22
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009011 368 -LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ----GVVPNV---LTYNTMISSACARSEEENALKLLQKMEEDLCKP 439 (546)
Q Consensus 368 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 439 (546)
+.|...|...+..|.+..+.+-|.++-.-+... -+.|+. .-|..+....|+....+.-...|+.|.-.-+-|
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p 431 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFP 431 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecC
Confidence 236677888888888999999898887665431 122332 235667778888889999999999998887889
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-Ch--------HH-----HHHHH------
Q 009011 440 DCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESG-KL--------EL-----ACSFF------ 499 (546)
Q Consensus 440 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~--------~~-----A~~~~------ 499 (546)
+..+...++++....+.++-.-++|.++...|...+...-.-++..+++.. .. .. |..++
T Consensus 432 ~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~ 511 (625)
T KOG4422|consen 432 HSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQ 511 (625)
T ss_pred CchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999886656666666666666544 11 10 11111
Q ss_pred -HHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 500 -EEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 500 -~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
.+|.... -.....+.+.-.+.+.|..++|-+++..+.+.+.
T Consensus 512 ~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~ 553 (625)
T KOG4422|consen 512 PIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHN 553 (625)
T ss_pred HHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCC
Confidence 2233223 3445667777778999999999999999865443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.5e-12 Score=133.55 Aligned_cols=350 Identities=11% Similarity=-0.001 Sum_probs=251.0
Q ss_pred CChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC-C-CCCCHHHHHHHHHHHHccCC---HH
Q 009011 175 KKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY-G-VEKDTRALSVLMDTLVKGNS---VE 249 (546)
Q Consensus 175 ~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-~~~~~~~~~~ll~~~~~~g~---~~ 249 (546)
+...++.+.++.|.+. .+-+.....-+.-...+.|+.++|.++|+..... + ...+......++..|.+.+. ..
T Consensus 356 ~~~~~~~~~~~~~y~~--~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 356 RNKAEALRLARLLYQQ--EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred CchhHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 5555666666666652 3445555555566677889999999999988652 1 12344455577777776655 22
Q ss_pred HHHH----------------------HHHHh---hcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 009011 250 HAYK----------------------VFLEF---KDCIPL--SSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVV 302 (546)
Q Consensus 250 ~a~~----------------------~~~~~---~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 302 (546)
++.. .+..+ ....|. +...|..+..++.. ++.++|...+.+..... |+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchH
Confidence 2222 22222 223355 77888888888887 78888999888877653 5544
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009011 303 SYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILS 382 (546)
Q Consensus 303 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 382 (546)
....+...+...|++++|...++++... .|+...+..+..++.+.|+.++|...+++..+.+ +.+...+..+.....
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~ 587 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHH
Confidence 4333444556899999999999987654 3444456667788889999999999999998865 334444444444555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009011 383 KAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNF 462 (546)
Q Consensus 383 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 462 (546)
+.|++++|...+++..+. .|+...|..+..++.+.|+.++|...+++..+.. +.+...+..+..++...|+.++|..
T Consensus 588 ~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 588 IPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred hCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 669999999999999875 4678888899999999999999999999998874 4456777788888999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcChhhHHHHHHHHHH
Q 009011 463 LLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYH-STYKMLEEKLEKKRLGNAKERINKLLA 538 (546)
Q Consensus 463 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~ 538 (546)
.++...+..+. +...+..+..++...|++++|...+++..+.. |+. .+....-....+..+++.+.+-+++..
T Consensus 665 ~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 665 MLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDDI--DNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999987665 77889999999999999999999999998654 544 333344444555555666666555443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.9e-12 Score=133.79 Aligned_cols=219 Identities=11% Similarity=0.063 Sum_probs=149.7
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 315 KDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIF 394 (546)
Q Consensus 315 g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 394 (546)
++.++|...+.+.... .|+......+...+...|++++|...|+++... +|+...+..+...+.+.|++++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4444555555544443 244433333344445777788887777776544 333444555666777788888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 009011 395 EDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSM 474 (546)
Q Consensus 395 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 474 (546)
++..+... .+...+..+.......|++++|...+++..+. .|+...+..+..++.+.|+.++|...+++..+..+.
T Consensus 566 ~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd- 641 (987)
T PRK09782 566 QQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN- 641 (987)
T ss_pred HHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence 87776541 12223333333444558888888888888775 467778888888888888888888888888887655
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 475 DAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 475 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
+...++.+..++...|++++|...+++..+.. +-+...+..+..++...|+.++|+..++..-+...
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 67778888888888888888888888888653 23456677778888888888888888887765543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-12 Score=128.01 Aligned_cols=365 Identities=13% Similarity=0.056 Sum_probs=279.5
Q ss_pred HHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHH
Q 009011 170 VLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVE 249 (546)
Q Consensus 170 ~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 249 (546)
.+...|++++|.+++.++.+ . .+.....|.+|...|-+.|+.+++...+-...-.. +.|...|..+.+...+.|+++
T Consensus 148 ~lfarg~~eeA~~i~~EvIk-q-dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIK-Q-DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHH-h-CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 34445999999999999988 4 78889999999999999999999988776554433 667788999999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCChhHHHHHHH
Q 009011 250 HAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYT----CFIEHYCREKDFRKVDDTLK 325 (546)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~----~li~~~~~~g~~~~a~~l~~ 325 (546)
.|.-.|.+..+..|++...+---+..|-+.|+...|.+-|.++....+..|..-+. .++..+...++.+.|.+.++
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999988888888888888899999999999999999998875533433333 34556777788889998888
Q ss_pred HHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------------------------CCCHHHHHHH
Q 009011 326 EMQEK-GCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDC---------------------------LPDTSFYSSL 377 (546)
Q Consensus 326 ~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~~l 377 (546)
..... +-..+...++.++..+.+...++.|......+..... .++..+. .+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl 383 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RL 383 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hH
Confidence 87763 2333555778888889999999998888877765211 1222231 23
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009011 378 IFILSKAGRVKDANEIFEDMKKQG--VVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKK 455 (546)
Q Consensus 378 i~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 455 (546)
+-++......+....+.....+.. +.-+...|.-+..++...|++.+|+.+|..+......-+...|..+..+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 334445555555555555555555 333556788899999999999999999999988766666788999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcChh
Q 009011 456 RMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMI--------SKGIVPYHSTYKMLEEKLEKKRLG 527 (546)
Q Consensus 456 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~l~~~~~~~g~~ 527 (546)
..+.|.+.++......+. +...--.|...+-+.|+.++|.+.++.+. ..+..|+..........+...|+.
T Consensus 464 e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 999999999999986554 56666777888899999999999999854 223556666666667778888888
Q ss_pred hHHHHHHHHHHH
Q 009011 528 NAKERINKLLAH 539 (546)
Q Consensus 528 ~~a~~~~~~m~~ 539 (546)
|+-.....+|-.
T Consensus 543 E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 543 EEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHH
Confidence 886666555543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-12 Score=128.04 Aligned_cols=282 Identities=10% Similarity=0.066 Sum_probs=167.2
Q ss_pred CCChHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHH--HHHHHHHccCCHHH
Q 009011 174 SKKFCLMWELVKEMDELNNGYVSLAT-MSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALS--VLMDTLVKGNSVEH 250 (546)
Q Consensus 174 ~~~~~~a~~l~~~m~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~g~~~~ 250 (546)
.|+++.|.+.+....+.. .++.. |........+.|+++.|.+.|.++.+. .|+..... .....+...|+.+.
T Consensus 97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 588888887777665521 22233 333344447788888888888888653 45543332 33556777888888
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChhHHHHH
Q 009011 251 AYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDV-------VSYTCFIEHYCREKDFRKVDDT 323 (546)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~a~~l 323 (546)
|...++++.+..|.+..+...+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 172 Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 172 ARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 888888887777778888888888888888888888888888876544222 1222223333333344444444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 324 LKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVV 403 (546)
Q Consensus 324 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 403 (546)
++.+.+. .+.+......+...+...|+.++|.+++++..+. +++.... ++.+....++.+++.+..+...+...
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P- 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG- 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC-
Confidence 4444332 2334555556666666666666666666666553 3333211 22223344666666666666655432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009011 404 PNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMF 468 (546)
Q Consensus 404 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 468 (546)
-|...+.++...+.+.+++++|.+.|+.+.+. .|+..++..+...+.+.|+.++|..++++..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 24445555666666666666666666666653 4666666666666666666666666665543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-12 Score=125.69 Aligned_cols=283 Identities=10% Similarity=0.047 Sum_probs=156.1
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHH-HHHHHHHHhcCCHHHHHH
Q 009011 210 GGRYDDAVEAFRGMKKYGVEKDTRA-LSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIF-NILIHGWCKTRKVDDAQK 287 (546)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~ 287 (546)
.|+++.|.+.+....+.. +++.. |.....+..+.|+.+.|.+.+.++.+..|.+.... ......+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 467777776666554321 11222 22223334566777777777766655333332221 223556666777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 288 AMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSV-------ITYTIVMHALGKAKQINEALKVYE 360 (546)
Q Consensus 288 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~ 360 (546)
.++++.+..+. +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 77777666543 4556666666777777777777777777766544222 122222333333344445555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009011 361 KMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPD 440 (546)
Q Consensus 361 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 440 (546)
.+.+. .+.+......+...+...|+.++|.+++++..+. .++... .++.+.+..++.+++.+..+...+.. +-|
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCC
Confidence 54332 1335556666666666666666666666666553 233321 12233334466666666666665542 333
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009011 441 CETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMI 503 (546)
Q Consensus 441 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 503 (546)
...+..+...|.+.+++++|.+.|+...+. .|+...|..+...+.+.|+.++|.+++++..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445556666666666666666666666653 3556666666666666666666666666543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.2e-12 Score=124.94 Aligned_cols=289 Identities=10% Similarity=0.051 Sum_probs=128.4
Q ss_pred CCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCH--HHHHHHHHHHHccCCHHHH
Q 009011 174 SKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDT--RALSVLMDTLVKGNSVEHA 251 (546)
Q Consensus 174 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~~~~a 251 (546)
.|+++.|.+.+....+. .+.....+-.......+.|+++.|.+.|.+..+.. |+. .........+...|+.+.|
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 45566666655555441 11122223333444555555666665555554321 222 1222234444555555555
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHHc
Q 009011 252 YKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYT-CFIEHYCREKDFRKVDDTLKEMQEK 330 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~a~~l~~~m~~~ 330 (546)
...++.+.+..|.+..+...+...+...|++++|.+.+..+.+.++. +...+. .-..++
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~------------------- 232 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE------------------- 232 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH-------------------
Confidence 55555555555555555555555555555555555555555555432 111111 000000
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 009011 331 GCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDC---LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVL 407 (546)
Q Consensus 331 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 407 (546)
......+..+++.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+.. ||..
T Consensus 233 -------------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~ 297 (409)
T TIGR00540 233 -------------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDR 297 (409)
T ss_pred -------------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcc
Confidence 000111111111222222222210 1244455555555555555555555555555432 2221
Q ss_pred H---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 009011 408 T---YNTMISSACARSEEENALKLLQKMEEDLCKPDC--ETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASL 482 (546)
Q Consensus 408 ~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 482 (546)
. ...........++.+.+.+.++...+.. +-|. .....+...|.+.|++++|.+.|+........|+...+..+
T Consensus 298 ~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 298 AISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred cchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 1 0111111222345555555555554431 1122 33345555555666666666666543333334555555556
Q ss_pred HHHHHHcCChHHHHHHHHHH
Q 009011 483 VRGLIESGKLELACSFFEEM 502 (546)
Q Consensus 483 i~~~~~~g~~~~A~~~~~~m 502 (546)
...+.+.|+.++|.+++++.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 66666666666666666554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-12 Score=127.59 Aligned_cols=291 Identities=9% Similarity=-0.002 Sum_probs=203.7
Q ss_pred HccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009011 243 VKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDD 322 (546)
Q Consensus 243 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 322 (546)
...|+++.|.+.+.+..+..+.....+-.....+.+.|+.+.|.+.+.+..+....++....-.....+...|++++|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 35678888888877665544444455555667777788888888888887665333232333334667777888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHH
Q 009011 323 TLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFIL---SKAGRVKDANEIFEDMKK 399 (546)
Q Consensus 323 l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~ 399 (546)
.++.+.+... -+...+..+...+...|++++|.+++..+.+.+..+.......-..++ ...+..+++.+.+..+.+
T Consensus 175 ~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8888887752 256677788888888888888888888888876442222211111111 222333333445555544
Q ss_pred CCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 009011 400 QGV---VPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCET---YAPLLKMCCRKKRMKVLNFLLTHMFKNDVS 473 (546)
Q Consensus 400 ~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 473 (546)
... +.+...+..+...+...|+.++|.+.+++..+.. ||... .....-.....++.+.+.+.++...+..+.
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 321 1378888999999999999999999999998863 44432 111122234457888899999888876444
Q ss_pred CCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHH
Q 009011 474 MDA--GTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLL 537 (546)
Q Consensus 474 ~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 537 (546)
|. ....++...+.+.|++++|.+.|+........|+..++..+...+.+.|+.++|.+++++-
T Consensus 332 -~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 332 -KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred -ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45 6778899999999999999999996444456799999999999999999999999999874
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-11 Score=122.39 Aligned_cols=399 Identities=11% Similarity=0.069 Sum_probs=239.4
Q ss_pred CChhHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009011 139 NDLTPAFGFFTWAKTQTGYMH-TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAV 217 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 217 (546)
.+...+..+..++....-..+ -...|-.+..+|-..|+++.|...|.+..+.. .....-.+..+.+.+.+.|+.+.+.
T Consensus 284 ~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-~d~~~l~~~GlgQm~i~~~dle~s~ 362 (1018)
T KOG2002|consen 284 KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-NDNFVLPLVGLGQMYIKRGDLEESK 362 (1018)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-CCCccccccchhHHHHHhchHHHHH
Confidence 345555555555543221111 12345667777777777777777777766632 1112444556677777777777777
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHccC----CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-
Q 009011 218 EAFRGMKKYGVEKDTRALSVLMDTLVKGN----SVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEM- 292 (546)
Q Consensus 218 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m- 292 (546)
..|+...+.. +.+..+...|...|...+ ..+.|..++.+.....+.|...|-.+...|....-+.. +.+|...
T Consensus 363 ~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~ 440 (1018)
T KOG2002|consen 363 FCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNAL 440 (1018)
T ss_pred HHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHH
Confidence 7777776642 445556666666666554 44556666655555566677777666666655444333 5554443
Q ss_pred ---HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 293 ---FQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEK---GCKPSV------ITYTIVMHALGKAKQINEALKVYE 360 (546)
Q Consensus 293 ---~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---g~~p~~------~~~~~li~~~~~~g~~~~a~~~~~ 360 (546)
...+..+.....|.+...+...|++++|...|...... ...+|. .+--.+...+-..++.+.|.+.|.
T Consensus 441 d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk 520 (1018)
T KOG2002|consen 441 DILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYK 520 (1018)
T ss_pred HHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 33444466777777777777788888888887776654 112222 112223344444555666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----------------------------------CCCCC
Q 009011 361 KMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ-----------------------------------GVVPN 405 (546)
Q Consensus 361 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------------------------------~~~p~ 405 (546)
.+.+.. +-=+..|--+..+....+...+|...+++..+. ...+|
T Consensus 521 ~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D 599 (1018)
T KOG2002|consen 521 SILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTD 599 (1018)
T ss_pred HHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCc
Confidence 555432 111122222222222223444444444443321 11133
Q ss_pred HHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 009011 406 VLTYNTMISSACA------------RSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVS 473 (546)
Q Consensus 406 ~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 473 (546)
..+.-+|.+.|.+ .+..++|+++|.+..+.. +-|...-+-+.-.++..|+++.|..+|....+....
T Consensus 600 ~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~ 678 (1018)
T KOG2002|consen 600 AYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD 678 (1018)
T ss_pred hhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh
Confidence 3333334443322 234577888888887764 445566667777788899999999999999886542
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhhh
Q 009011 474 MDAGTYASLVRGLIESGKLELACSFFEEMISK-GIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKEQ 543 (546)
Q Consensus 474 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 543 (546)
+..+|-.+.++|..+|++..|++.|+....+ +-.-+..+...|.+++...|++.++.+...........
T Consensus 679 -~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 679 -FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred -CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 4567888899999999999999999987765 43456777888899999999988888877666554433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.8e-11 Score=107.15 Aligned_cols=329 Identities=15% Similarity=0.125 Sum_probs=173.9
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc--CCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 009011 130 VEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGK--SKKFCLMWELVKEMDELNNGYVSLATMSTIMRRL 207 (546)
Q Consensus 130 ~~~~l~~~~~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~--~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~ 207 (546)
+..+++.+.+.+..+..+|..-+.. ..-..+.+++.+ .|+|..|.++..+-.+ . .......|..-.++-
T Consensus 58 l~~~l~~v~~~~~~~~~w~~~rKrr-------ra~~~~~egl~~l~eG~~~qAEkl~~rnae-~-~e~p~l~~l~aA~AA 128 (400)
T COG3071 58 LEWLLRRVLRTPAHTRGWFSRRKRR-------RARKALNEGLLKLFEGDFQQAEKLLRRNAE-H-GEQPVLAYLLAAEAA 128 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCcHHHHHHHHHHhhh-c-CcchHHHHHHHHHHH
Confidence 3344444444454554444433211 111333444433 4677777777766554 2 333444555556666
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009011 208 VRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQK 287 (546)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 287 (546)
-+.|+.+.+-.++.+..+..-.++...+..........|+.+.|..-+.++.+.-|.+..+.....++|.+.|++.+...
T Consensus 129 ~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~ 208 (400)
T COG3071 129 QQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLA 208 (400)
T ss_pred HhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHH
Confidence 66677777777776666542244445555555566666666666666666665556666666666666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009011 288 AMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDC 367 (546)
Q Consensus 288 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 367 (546)
++..|.+.|.--|... ..+ ...+|..+++-....+..+.-...++..... .
T Consensus 209 ~l~~L~ka~~l~~~e~---------------------~~l-------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-l 259 (400)
T COG3071 209 ILPKLRKAGLLSDEEA---------------------ARL-------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-L 259 (400)
T ss_pred HHHHHHHccCCChHHH---------------------HHH-------HHHHHHHHHHHHhccccchHHHHHHHhccHH-h
Confidence 6666666654322210 000 1124444555444444444444444444332 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009011 368 LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPL 447 (546)
Q Consensus 368 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 447 (546)
.-++..-.+++.-+.++|+.++|.++.++..+++..|. -...-.+.+-++.+.-.+..++-.+.. +-++..+..|
T Consensus 260 r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tL 334 (400)
T COG3071 260 RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTL 334 (400)
T ss_pred hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHH
Confidence 22344445555556666666666666666655554444 111222344455555555554443331 2233455556
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009011 448 LKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMI 503 (546)
Q Consensus 448 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 503 (546)
...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+..+|.+..++..
T Consensus 335 G~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 335 GRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 66666666666666666654443 3556666666666666666666666666554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=136.05 Aligned_cols=215 Identities=15% Similarity=0.145 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 009011 245 GNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTL 324 (546)
Q Consensus 245 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~ 324 (546)
.++.+.|.+.++++....+.+...+..++.. ...+++++|.++++...+.. ++...+..++..+...++++++.+++
T Consensus 57 ~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l 133 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELL 133 (280)
T ss_dssp ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHH
Confidence 3444444444444333222233333333333 34444444444443332221 22233333334444444444444444
Q ss_pred HHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 325 KEMQEKG-CKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVV 403 (546)
Q Consensus 325 ~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 403 (546)
+.+.... .+.+...|..+...+.+.|+.++|++.+++..+.. +.|..+.+.++..+...|+.+++.++++...+.. +
T Consensus 134 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~ 211 (280)
T PF13429_consen 134 EKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-P 211 (280)
T ss_dssp HHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--H
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-c
Confidence 4433221 12233333344444444444444444444444332 1123334444444444444444444443333321 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009011 404 PNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLT 465 (546)
Q Consensus 404 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 465 (546)
.|...+..+..++...|+.++|+.++++..+.. +.|......+..++...|+.++|..+.+
T Consensus 212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-------------
T ss_pred CHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 222333344444444444444444444443321 2233333344444444444444444333
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-14 Score=134.60 Aligned_cols=259 Identities=14% Similarity=0.113 Sum_probs=84.1
Q ss_pred HHHHHHccCCHHHHHHHHHHhhc-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009011 238 LMDTLVKGNSVEHAYKVFLEFKD-C-IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK 315 (546)
Q Consensus 238 ll~~~~~~g~~~~a~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 315 (546)
+...+.+.|++++|.++++.... . .+.+...|..+...+...++.++|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 34555666777777776644332 2 2444555555666666677777777777777665433 34445555555 5667
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 316 DFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDD-CLPDTSFYSSLIFILSKAGRVKDANEIF 394 (546)
Q Consensus 316 ~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~ 394 (546)
++++|.++++...+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777666654432 344455566666677777777777777665432 2345666666666777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 009011 395 EDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSM 474 (546)
Q Consensus 395 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 474 (546)
++..+.... |....+.++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|..++++..+..+.
T Consensus 170 ~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~- 246 (280)
T PF13429_consen 170 RKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD- 246 (280)
T ss_dssp HHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-
Confidence 777654311 45556666666666777777666666665542 334445566666666777777777777776664433
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009011 475 DAGTYASLVRGLIESGKLELACSFFEEMI 503 (546)
Q Consensus 475 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 503 (546)
|......+..++...|+.++|.++.++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 66666666677777777777766665543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-10 Score=118.04 Aligned_cols=387 Identities=15% Similarity=0.145 Sum_probs=273.7
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009011 143 PAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELN-NGYVSLATMSTIMRRLVRGGRYDDAVEAFR 221 (546)
Q Consensus 143 ~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 221 (546)
.++..+.-+. .-...++.+.+.|...|.-.|++..++.+...+.... ....-...|..+.++|-..|++++|...|.
T Consensus 254 ~~~~ll~~ay--~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 254 KGVQLLQRAY--KENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHH--hhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3455555554 3345677788889999999999999999999887732 012335568889999999999999999998
Q ss_pred HhhhCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHC
Q 009011 222 GMKKYGVEKDTR--ALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTR----KVDDAQKAMKEMFQQ 295 (546)
Q Consensus 222 ~m~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~ 295 (546)
+..+. .+|.. .+.-+...+.+.|+++.+...|+.+....|.+..+...|...|...+ ..+.|..++.+..+.
T Consensus 332 ~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 332 ESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred HHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 88764 44443 44567788999999999999999999989999999999999998886 556777777777665
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC
Q 009011 296 GFSPDVVSYTCFIEHYCREKDFRKVDDTLKEM----QEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSD---DCL 368 (546)
Q Consensus 296 g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~ 368 (546)
-+ .|...|-.+...+-. ++...++.+|... ...+..+.....|.+.......|++++|...|...... ...
T Consensus 410 ~~-~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 410 TP-VDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred cc-ccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence 43 367777776666554 4444446666544 45566677889999999999999999999999988654 122
Q ss_pred CCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C---
Q 009011 369 PDT------SFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVL-TYNTMISSACARSEEENALKLLQKMEEDL-C--- 437 (546)
Q Consensus 369 ~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~--- 437 (546)
+|. .+-..+..++-..++.+.|.++|..+.+.. |+-+ .|.-+.......+...+|...+.+....+ -
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ 565 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPN 565 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcH
Confidence 333 223345666677789999999999998753 3322 33333322223355566666665554321 1
Q ss_pred -------------------------------CCCHHHHHHHHHHHHh------------cCChHHHHHHHHHHHhCCCCC
Q 009011 438 -------------------------------KPDCETYAPLLKMCCR------------KKRMKVLNFLLTHMFKNDVSM 474 (546)
Q Consensus 438 -------------------------------~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~m~~~~~~~ 474 (546)
.+|......|.+.|.. .+..++|.++|.++.+..+.
T Consensus 566 arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk- 644 (1018)
T KOG2002|consen 566 ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK- 644 (1018)
T ss_pred HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-
Confidence 1232333333333321 33467788888888887666
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 009011 475 DAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAH 539 (546)
Q Consensus 475 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 539 (546)
|...-|.+.-.++..|++.+|..+|.+..+... -...+|-.+..+|...|++-.|.++++...+
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777788888889999999999998887743 2344677788888888999888888877643
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-11 Score=108.37 Aligned_cols=288 Identities=13% Similarity=0.137 Sum_probs=166.9
Q ss_pred CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC--CCC--CHHHHHHHHHHHHhcCCHHHHH
Q 009011 211 GRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDC--IPL--SSQIFNILIHGWCKTRKVDDAQ 286 (546)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~--~~~~~~~li~~~~~~g~~~~a~ 286 (546)
.+.++|+++|-+|.+.. +-+..+-.+|.+.+-+.|.++.|..+++.+.+. .+. .......|.+-|...|-++.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45666666666665532 333344455566666666666666666665442 111 1223455666677777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 287 KAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSV----ITYTIVMHALGKAKQINEALKVYEKM 362 (546)
Q Consensus 287 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~ 362 (546)
.+|..+.+.|.- -......|+..|-...+|++|++.-+++.+.+-.+.. ..|.-+...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 777777654321 2345556677777777777777777766665544322 23444445555566777777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 009011 363 KSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCE 442 (546)
Q Consensus 363 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 442 (546)
.+.+ +..+.+--.+.+.+...|++++|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+.. +...
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~ 283 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGAD 283 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCcc
Confidence 6654 223444445566667777777777777777766433334556667777777777777777777776653 2333
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHC
Q 009011 443 TYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIE---SGKLELACSFFEEMISK 505 (546)
Q Consensus 443 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~ 505 (546)
.-..+..........+.|..++.+-... +|+...+..+|..-.. .|...+-...++.|+..
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 3333333333444445555544444433 4666666666665532 34456666666666644
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.1e-11 Score=106.33 Aligned_cols=289 Identities=14% Similarity=0.088 Sum_probs=218.1
Q ss_pred CCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC---CHHHHHHHHHHHHccCCHHH
Q 009011 174 SKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEK---DTRALSVLMDTLVKGNSVEH 250 (546)
Q Consensus 174 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~g~~~~ 250 (546)
+.+.++|.++|-+|.+ . .+.+..+.-++...|.+.|..+.|+.+.+.+.+..--+ ...+...|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~-~-d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQ-E-DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHh-c-CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 4678899999999998 5 77788888899999999999999999999987642111 12344566777889999999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHH
Q 009011 251 AYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDV----VSYTCFIEHYCREKDFRKVDDTLKE 326 (546)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~l~~~ 326 (546)
|+++|..+.+....-......|+..|-...+|++|.++-+++...+..+.. .-|.-+...+....+.+.|..++..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999887754455667888999999999999999999999887655432 2455555666667889999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009011 327 MQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNV 406 (546)
Q Consensus 327 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 406 (546)
..+.+.+ .+..--.+.+.....|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+... ..
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~ 282 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GA 282 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--Cc
Confidence 8877433 34444456778889999999999999999987555567788899999999999999999999887543 33
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHh
Q 009011 407 LTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCR---KKRMKVLNFLLTHMFK 469 (546)
Q Consensus 407 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~ 469 (546)
..-..+-..-......+.|..++.+-... +|+...+..++..... .|...+-..+++.|..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33444444444445566666666655554 7999999999987654 3345555566666654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-09 Score=103.82 Aligned_cols=410 Identities=12% Similarity=0.062 Sum_probs=305.1
Q ss_pred HHHHhcCCCCCCHHHHHHHHHhhcC--ChhHHHHHHHHHHhCCCCC--CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 009011 115 VEALKGCGVSVSNSLVEQTLRRFSN--DLTPAFGFFTWAKTQTGYM--HTPEMYNTMVDVLGKSKKFCLMWELVKEMDEL 190 (546)
Q Consensus 115 ~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~a~~~f~~~~~~~g~~--~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~ 190 (546)
+..|...|+.++.+.+..=-..|.. ...-+..+..-.. --|.. --..+|..-...|.+.+.++-|+.+|....+
T Consensus 467 l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avi-gigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq- 544 (913)
T KOG0495|consen 467 LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVI-GIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ- 544 (913)
T ss_pred HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHH-hhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh-
Confidence 3445566788888777766666632 2222333333322 12221 2235788888889999999999999998887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHH
Q 009011 191 NNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFN 270 (546)
Q Consensus 191 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 270 (546)
- .+.....|...+..--..|..+....+|++.... ++.....+......+-..|++..|..++....+..|.+..+|.
T Consensus 545 v-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwl 622 (913)
T KOG0495|consen 545 V-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWL 622 (913)
T ss_pred h-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHH
Confidence 3 6667788877777777788899999999998875 3555555666666777789999999999988887888999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009011 271 ILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAK 350 (546)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 350 (546)
+-+..-.....++.|..+|.+.... .|+...|..-+..---.+..++|.+++++..+. ++.-...|..+.+.+-+.+
T Consensus 623 aavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 623 AAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQME 699 (913)
T ss_pred HHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHH
Confidence 9999999999999999999988775 456666766666666678899999999888876 2323446677778888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 351 QINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQ 430 (546)
Q Consensus 351 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 430 (546)
+++.|.+.|..-.+. ++-.+..|-.+...=-+.|.+-+|..+++...-++.+ +...|...|+.-.+.|..+.|..++.
T Consensus 700 ~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lma 777 (913)
T KOG0495|consen 700 NIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMA 777 (913)
T ss_pred HHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHH
Confidence 999998888765543 3456667777777778888999999999998876644 77889999999999999999999988
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 009011 431 KMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPY 510 (546)
Q Consensus 431 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 510 (546)
+..+. ++-+...|..-|....+.++-......+++ +.-|..+.-.+...+....+++.|.+.|.+.+..+ ||
T Consensus 778 kALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d 849 (913)
T KOG0495|consen 778 KALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PD 849 (913)
T ss_pred HHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--Cc
Confidence 88775 455666777777666666664444433332 23466777778888888899999999999998654 44
Q ss_pred -HHHHHHHHHHHHhcChhhHHHHHHHHHHHHh
Q 009011 511 -HSTYKMLEEKLEKKRLGNAKERINKLLAHAK 541 (546)
Q Consensus 511 -~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 541 (546)
-.+|..+...+...|..+.-.+++++..+..
T Consensus 850 ~GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 850 NGDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred cchHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 3566677777888888888888888776543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.9e-11 Score=109.28 Aligned_cols=150 Identities=9% Similarity=0.019 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 373 FYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCC 452 (546)
Q Consensus 373 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 452 (546)
+...+...|-...+..+|.+++.+... -++.|+.....|...|-+.|+-.+|.+++-+--.. ++.+..|..-|...|.
T Consensus 560 vl~qianiye~led~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyi 637 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYI 637 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHH
Confidence 333333444444444444444433322 12234444555555555555555555544332222 2334445554555555
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChh
Q 009011 453 RKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGL-IESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLG 527 (546)
Q Consensus 453 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 527 (546)
...-++++..+|++.. -+.|+..-|..||..| -+.|++.+|.+++++...+ ++-|......+++.+...|..
T Consensus 638 dtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 638 DTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred hhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 5555555666655443 2466777777766554 3567777777777776554 455566666666666555543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.5e-12 Score=122.97 Aligned_cols=283 Identities=13% Similarity=0.062 Sum_probs=138.1
Q ss_pred ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCC---CCCHHHHHHHHHHHHhcCCHH-HHHH
Q 009011 212 RYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCI---PLSSQIFNILIHGWCKTRKVD-DAQK 287 (546)
Q Consensus 212 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~-~a~~ 287 (546)
+..+|+..|..+.+. +..+..+...+..+|...+++++|+++|+.+++.. -.+..+|.+.+-.+-+.-.+. -|..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 345555555553332 23333444555555555666666666665554421 123444544443322211110 1111
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009011 288 AMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDC 367 (546)
Q Consensus 288 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 367 (546)
+.+... -...+|.++-++|.-.++.+.|++.|++..+.+.. ...+|+.+..-+....++|.|...|+......
T Consensus 413 Li~~~~-----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 413 LIDTDP-----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHhhCC-----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 111111 13455666666666666666666666555544211 44555555555555556666666665554432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009011 368 LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPL 447 (546)
Q Consensus 368 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 447 (546)
+-+-.+|.-+...|.+.++++.|+-.|++..+.+.. +.+....+...+-+.|+.|+|+++++++...+ +-|+..--.-
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 112223333444555666666666666655543321 33444444555555566666666666655543 2222222223
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 448 LKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 448 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
...+...++.++|...++++++.-+. +..+|..+...|.+.|+.+.|+.-|.-|.+.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 33444555666666666666554332 4445555556666666666666666555544
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-10 Score=105.93 Aligned_cols=332 Identities=12% Similarity=0.039 Sum_probs=203.6
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHH
Q 009011 155 TGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRA 234 (546)
Q Consensus 155 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 234 (546)
.+...|...+-...-++-+.|....|++.|.+... . .|-.|.+|..|...... ++....... |.+.|..-
T Consensus 158 ~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~-~-~P~~W~AWleL~~lit~-------~e~~~~l~~-~l~~~~h~ 227 (559)
T KOG1155|consen 158 CGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVN-R-YPWFWSAWLELSELITD-------IEILSILVV-GLPSDMHW 227 (559)
T ss_pred hcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHh-c-CCcchHHHHHHHHhhch-------HHHHHHHHh-cCcccchH
Confidence 34455666666666777788999999999988876 3 67788888766654421 222222221 22222111
Q ss_pred H--HHHHHHHHccCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHH
Q 009011 235 L--SVLMDTLVKGNSVEHAYKVFLEFKD-CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGF--SPDVVSYTCFIE 309 (546)
Q Consensus 235 ~--~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~ 309 (546)
+ -.+..++-...+.+++.+-.+...+ +++.+...-+....+.-...++++|+.+|+++.+..+ --|..+|..++-
T Consensus 228 M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY 307 (559)
T KOG1155|consen 228 MKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH
Confidence 1 2334455555667777666666555 5777776666667777777888888888888887632 115666766543
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009011 310 HYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKD 389 (546)
Q Consensus 310 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 389 (546)
.+..+-. +.++.+-.-.-.+--+.|+.++.+-|+-.++.++|...|+...+.+ +-...+|+.+.+-|....+...
T Consensus 308 --v~~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 308 --VKNDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred --HHhhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHH
Confidence 2222211 1111111111011123456666666777777777777777777665 3345666666677777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009011 390 ANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 390 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 469 (546)
|.+-++...+-. +.|-..|-.+.++|.-.+.+.=|+-+|++..+.. +-|...|.+|..+|.+.++.++|++-|.....
T Consensus 383 Ai~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 383 AIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 777777776543 2366677777777777777777777777766642 44566677777777777777777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009011 470 NDVSMDAGTYASLVRGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 470 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (546)
.|-. +...+..+...|-+.++.++|...|++.++
T Consensus 461 ~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 461 LGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred cccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5433 456677777777777777777776666554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-10 Score=115.93 Aligned_cols=327 Identities=16% Similarity=0.106 Sum_probs=254.4
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009011 207 LVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQ 286 (546)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 286 (546)
..-.|+.++|.+++.+..+.. +.....|..|...|-..|+.+++...+-......|.|...|..+.....+.|.++.|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 334499999999999998875 7788899999999999999999999888777778889999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 287 KAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVI----TYTIVMHALGKAKQINEALKVYEKM 362 (546)
Q Consensus 287 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~~ 362 (546)
-.|.+.++..+. +...+---+..|-+.|+...|.+-|.++.....+.|.. ....+++.+...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999987543 45555555678899999999999999999874322322 2334566677788889999998887
Q ss_pred HhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---------------------------CHHHHHHHHH
Q 009011 363 KSDD-CLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVP---------------------------NVLTYNTMIS 414 (546)
Q Consensus 363 ~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---------------------------~~~~~~~li~ 414 (546)
...+ -..+...++.++..|.+...++.|......+......+ +... --++-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhh
Confidence 7632 23456678888999999999999998888877622222 2222 12223
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 009011 415 SACARSEEENALKLLQKMEEDLCKP--DCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKL 492 (546)
Q Consensus 415 ~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 492 (546)
++...+..+....+.....+.++.| +...|.-+..++...|++.+|..++..+......-+...|-.+..+|...|.+
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 3444445555555555566665333 45678889999999999999999999999976666788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcChhhHHHHHHHHHH
Q 009011 493 ELACSFFEEMISKGIVPYH-STYKMLEEKLEKKRLGNAKERINKLLA 538 (546)
Q Consensus 493 ~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~ 538 (546)
++|.+.++..+.. .|+. ..-..|...+.+.|+.|+|.+.+..+.
T Consensus 466 e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 466 EEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999865 3543 344466777888999999998887753
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4e-12 Score=123.28 Aligned_cols=285 Identities=13% Similarity=0.049 Sum_probs=227.1
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHH
Q 009011 246 NSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGF--SPDVVSYTCFIEHYCREKDFRKVDDT 323 (546)
Q Consensus 246 g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~l 323 (546)
-+..+|...|..+.........+...+..+|...+++++|+++|+.+.+... .-+...|.+.+-.+-+.= ++..
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHH
Confidence 3457888999887777777778889999999999999999999999987631 126778887765543321 2222
Q ss_pred H-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009011 324 L-KEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGV 402 (546)
Q Consensus 324 ~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 402 (546)
+ +++.+. .+-.+.+|.++..+|.-.++.+.|++.|++..+.+ +-..++|+.+..-+.....+|+|...|+....
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--- 483 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALG--- 483 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhc---
Confidence 2 223332 23367899999999999999999999999999875 23788999999999999999999999999885
Q ss_pred CCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 009011 403 VPNVLTYN---TMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTY 479 (546)
Q Consensus 403 ~p~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 479 (546)
.|...|| -+...|.+.++++.|+-.|+++.+.+ +-+.+....+...+.+.|+.|+|+.+++++...+.+ |.-.-
T Consensus 484 -~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~ 560 (638)
T KOG1126|consen 484 -VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK 560 (638)
T ss_pred -CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence 4555555 46778999999999999999998875 445677778888899999999999999999998777 55555
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcChhhHHHHHHHHHHHHhhhc
Q 009011 480 ASLVRGLIESGKLELACSFFEEMISKGIVPYH-STYKMLEEKLEKKRLGNAKERINKLLAHAKEQK 544 (546)
Q Consensus 480 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 544 (546)
-..+..+...+++++|+..++++++. .|+. ..|..+...|.+-|+.+.|..=|..+...+.++
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 56677888899999999999999854 4655 556677888999999999998888887766554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.3e-10 Score=103.01 Aligned_cols=285 Identities=11% Similarity=0.086 Sum_probs=198.4
Q ss_pred cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 009011 245 GNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTL 324 (546)
Q Consensus 245 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~ 324 (546)
.|++..|++...+-.+..+.....|..-+.+.-..|+.+.+-.++.+..+.-..++...+-+........|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 35566666655554443333444455555555566666666666666665533444555555556666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 325 KEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPD-------TSFYSSLIFILSKAGRVKDANEIFEDM 397 (546)
Q Consensus 325 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~~ 397 (546)
+++.+.+.. +.........+|.+.|++.....++..+.+.+.-.+ ..+|..+++-....+..+.-...++..
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 666665433 445566666667777777777777777666664433 245666776666666666666677766
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 009011 398 KKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAG 477 (546)
Q Consensus 398 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 477 (546)
.. ..+.++..-.+++.-+.+.|+.++|.++.++..+.+..|+ .. .+-.+.+.++.+.-.+..+.-.+.... +..
T Consensus 256 pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~ 329 (400)
T COG3071 256 PR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQHPE-DPL 329 (400)
T ss_pred cH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhCCC-Chh
Confidence 54 2234666777888889999999999999999998876665 22 223567788888888888877764433 558
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHH
Q 009011 478 TYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLA 538 (546)
Q Consensus 478 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 538 (546)
.+.++...|.+.+.+.+|...|+...+ ..|+..+|..+..++.+.|+.++|.++.++-.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 899999999999999999999998875 45999999999999999999999999887654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-09 Score=101.32 Aligned_cols=259 Identities=12% Similarity=0.076 Sum_probs=194.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 009011 275 GWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR--EKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQI 352 (546)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 352 (546)
-+.+.|+++.|.++++-+.+..-+.-...-+.|-..+.- ..++..|.++-+...... .-+....+.-.......|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 477899999999999988876333222333333322222 456888888777766542 22333333334445568999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 353 NEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKM 432 (546)
Q Consensus 353 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 432 (546)
++|.+.|++....+.......||. .-.+-..|++++|++.|-++...- ..+......+...|....+..+|++++.+.
T Consensus 507 dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999988754444444543 335678899999999998876421 236777778888899999999999999776
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 009011 433 EEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHS 512 (546)
Q Consensus 433 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 512 (546)
... ++.|+...+.|...|-+.|+-..|.+.+-+-.+. +..+..+...|..-|....-+++|+.+|++.. -+.|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHH
Confidence 654 5677889999999999999999998887665554 44588899999999999999999999999876 5789999
Q ss_pred HHHHHHHHH-HhcChhhHHHHHHHHHHHH
Q 009011 513 TYKMLEEKL-EKKRLGNAKERINKLLAHA 540 (546)
Q Consensus 513 ~~~~l~~~~-~~~g~~~~a~~~~~~m~~~ 540 (546)
-|..++..| .+.|.++.|.++++.+.+.
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 999887655 6689999999999988654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.4e-08 Score=93.43 Aligned_cols=356 Identities=10% Similarity=0.030 Sum_probs=213.4
Q ss_pred CCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 009011 174 SKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYK 253 (546)
Q Consensus 174 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 253 (546)
.|++..|.++|+.-.+ ..|+..+|++.|..-.+.+..+.|..+|++..- +.|+..+|..-...=.+.|++..+..
T Consensus 154 LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred hcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 3444444444444443 334444444444444444444444444444432 23444444444444444444444444
Q ss_pred HHHHhhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHH------
Q 009011 254 VFLEFKDCIPLS---SQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSP-DVVSYTCFIEHYCREKDFRKVDDT------ 323 (546)
Q Consensus 254 ~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~l------ 323 (546)
+|+...+.+..+ ...+.+....=..+..++.|.-+|+-.++.=++- ....|..+...=-+-|+.....+.
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 444433322111 1223333333333444444444444444331110 022222222222233443333332
Q ss_pred --HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHH---HHHHHHhcCCHHHHH
Q 009011 324 --LKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDT-------SFYSS---LIFILSKAGRVKDAN 391 (546)
Q Consensus 324 --~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~---li~~~~~~g~~~~A~ 391 (546)
++.+.+. .+-|-.+|-..+..-...|+.+...++|+..... ++|-. .+|-- .+..=....+++.+.
T Consensus 309 ~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 309 FQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 2223333 2336667777777778889999999999998865 34421 12211 111123467888999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009011 392 EIFEDMKKQGVVPNVLTYNTMI----SSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHM 467 (546)
Q Consensus 392 ~~~~~~~~~~~~p~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 467 (546)
++++...+ -++....||..+- .--.++.+...|.+++...+ |.-|-..+|...|..-.+.+++|.+..++++.
T Consensus 387 ~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99998887 2333445554443 33346788999999998776 45788899999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHH
Q 009011 468 FKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKG-IVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHA 540 (546)
Q Consensus 468 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 540 (546)
.+.++. +..+|......-...|+.+.|..+|+-+++.. +......|.+.|+.=...|.++.+..+++.+-+.
T Consensus 464 le~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 464 LEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 998877 88899998888889999999999999998763 3334556777777778889999999999887654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-11 Score=121.96 Aligned_cols=250 Identities=17% Similarity=0.210 Sum_probs=171.3
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009011 219 AFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD-CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGF 297 (546)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 297 (546)
++-.+...|+.|+..||..++.-||..|+++.|- +|.-|.- ..|.+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455666778888888888888888888888777 7766654 46777777888888877777776665
Q ss_pred CCCHHHHHHHHHHHHhcCChhH---HHHHHHHHHH----cCC-----------------CCCHHHHHHHHHHHHhcCCHH
Q 009011 298 SPDVVSYTCFIEHYCREKDFRK---VDDTLKEMQE----KGC-----------------KPSVITYTIVMHALGKAKQIN 353 (546)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~~~~---a~~l~~~m~~----~g~-----------------~p~~~~~~~li~~~~~~g~~~ 353 (546)
.|...||+.|..+|...||... +.+.+..+.. .|+ -||.. .++.-....|-++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWA 156 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHH
Confidence 4677788888888888887543 3222222221 121 12221 1222233345555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 354 EALKVYEKMKSDDCLPDTSFYSSLIFILSK-AGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKM 432 (546)
Q Consensus 354 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 432 (546)
.+++++..+...... .+... .+.-... ...+++-..+.....+ .|+..+|.+++.+....|+.+.|..++.+|
T Consensus 157 qllkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 666555544332111 11111 1222222 2234444444444443 489999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 009011 433 EEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKL 492 (546)
Q Consensus 433 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 492 (546)
.+.|++.+.+.|+.|+-+ .++...+..++..|.+.|+.|+..|+...+..+...|..
T Consensus 231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence 999999999999999866 889999999999999999999999999999988886653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-07 Score=90.00 Aligned_cols=387 Identities=10% Similarity=0.031 Sum_probs=270.5
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHH----hhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009011 144 AFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMD----ELNNGYVSLATMSTIMRRLVRGGRYDDAVEA 219 (546)
Q Consensus 144 a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 219 (546)
|.++.+.+. ..++.+..+|-.-...=-.+|+.+...+++++-. ..| ...+...|-.=...+-..|..-.+..+
T Consensus 425 AkkvLNkaR--e~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ng-v~i~rdqWl~eAe~~e~agsv~TcQAI 501 (913)
T KOG0495|consen 425 AKKVLNKAR--EIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANG-VEINRDQWLKEAEACEDAGSVITCQAI 501 (913)
T ss_pred HHHHHHHHH--hhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcc-eeecHHHHHHHHHHHhhcCChhhHHHH
Confidence 344444443 4566677777776666677777777777766532 223 556677776666677777777777777
Q ss_pred HHHhhhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009011 220 FRGMKKYGVEK--DTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGF 297 (546)
Q Consensus 220 ~~~m~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 297 (546)
.......|+.- -..|+..-...|.+.+.++-|..+|....+-+|.+..+|...+..--..|..++-..+|.+....-.
T Consensus 502 i~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p 581 (913)
T KOG0495|consen 502 IRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP 581 (913)
T ss_pred HHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 77776666532 2456677777788888888888888887777888888888888777778888888888888887644
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 009011 298 SPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSL 377 (546)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 377 (546)
+ ....|-.....+-..|+...|..++.+..+.... +...|...+.......+++.|..+|.+.... .|+..+|.--
T Consensus 582 k-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs 657 (913)
T KOG0495|consen 582 K-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKS 657 (913)
T ss_pred c-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHH
Confidence 3 4556666677777788888888888888876433 6677778888888888888888888887764 4677777766
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009011 378 IFILSKAGRVKDANEIFEDMKKQGVVPN-VLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKR 456 (546)
Q Consensus 378 i~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 456 (546)
+...--.++.++|.+++++..+. .|+ ...|-.+.+.+-+.++.+.|.+.|..-.+. ++-....|..+.+.--+.|.
T Consensus 658 ~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~ 734 (913)
T KOG0495|consen 658 ANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQ 734 (913)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcc
Confidence 66666778888888888887764 344 345666666777777777777777654443 33334455555555667778
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----C-------------------------C
Q 009011 457 MKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISK----G-------------------------I 507 (546)
Q Consensus 457 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-------------------------~ 507 (546)
+-.|..+++...-.++. +...|-..|.+-.+.|..+.|..+..+..+. | .
T Consensus 735 ~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc 813 (913)
T KOG0495|consen 735 LVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC 813 (913)
T ss_pred hhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc
Confidence 88888888888877776 7788888888888888888887766665543 1 1
Q ss_pred CCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHh
Q 009011 508 VPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAK 541 (546)
Q Consensus 508 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 541 (546)
.-|+...-.+...+....+++.+.+.|....+..
T Consensus 814 e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 814 EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 1233344455556666677777777777665544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.4e-08 Score=90.62 Aligned_cols=353 Identities=12% Similarity=0.139 Sum_probs=267.9
Q ss_pred hhHHHHHH-HHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009011 141 LTPAFGFF-TWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEA 219 (546)
Q Consensus 141 ~~~a~~~f-~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 219 (546)
...|..+| .|+ ...|+...|.+.|+.=.+-+.++.|..+++...- ..|...+|-.-.+.--+.|+...|..+
T Consensus 157 i~gaRqiferW~----~w~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 157 IAGARQIFERWM----EWEPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred cHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 33444444 344 3679999999999999999999999999999876 668888998878888899999999999
Q ss_pred HHHhhhC-CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHH-------
Q 009011 220 FRGMKKY-GV-EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLS--SQIFNILIHGWCKTRKVDDAQKA------- 288 (546)
Q Consensus 220 ~~~m~~~-~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~------- 288 (546)
|+...+. |- .-+...+.+....=.++..++.|.-+|+-..+.+|.+ ...|......=-+.|+....+++
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 9988763 11 1112233333333445677889999998888877777 66777777777777886665554
Q ss_pred -HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HhcCCHHHHHH
Q 009011 289 -MKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSV-------ITYTIVMHAL---GKAKQINEALK 357 (546)
Q Consensus 289 -~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~-------~~~~~li~~~---~~~g~~~~a~~ 357 (546)
++.+...++ -|-.+|--.++.--..|+.+...++|+..+.. ++|-. ..|.-+=.+| ....+.+.+.+
T Consensus 310 qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 310 QYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred HHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344454433 37788888888888889999999999999876 44422 1121111122 34678999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 358 VYEKMKSDDCLPDTSFYSSLIFIL----SKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKME 433 (546)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 433 (546)
+|....+. ++....||.-+=-+| .+..++..|.+++.... |..|...+|...|..-.+.+++|.+.+++++.+
T Consensus 388 vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 388 VYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99998884 444555665544444 46788999999999887 667999999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009011 434 EDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKND-VSMDAGTYASLVRGLIESGKLELACSFFEEMISKG 506 (546)
Q Consensus 434 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 506 (546)
+.+ +-+..+|......-...|+.+.|..+|.-+.... .......|.+.|..-...|.++.|..+++++.+..
T Consensus 465 e~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 465 EFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred hcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 986 5567888888888888999999999999888742 33345678888888889999999999999998764
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.7e-10 Score=113.09 Aligned_cols=269 Identities=11% Similarity=0.059 Sum_probs=177.3
Q ss_pred CCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH---------ccCCHHHHHHHHHHh
Q 009011 193 GYVSLATMSTIMRRLVRG-----GRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLV---------KGNSVEHAYKVFLEF 258 (546)
Q Consensus 193 ~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~---------~~g~~~~a~~~~~~~ 258 (546)
.+.+...|...+++.... +..++|+++|++..+.. +.+...+..+..++. ..++.++|...+++.
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 445566665556654221 23567888888887653 334455555544433 234578888888888
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 009011 259 KDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVIT 338 (546)
Q Consensus 259 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~ 338 (546)
....|.+...+..+...+...|++++|...|++..+.++. +...+..+...+...|++++|...+++..+.... +...
T Consensus 331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 8877888888888888888889999999999988887543 5667777888888889999999999988876433 2223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 009011 339 YTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPN-VLTYNTMISSAC 417 (546)
Q Consensus 339 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~ 417 (546)
+..++..+...|++++|...++++.+...+-+...+..+..+|...|++++|...+.++... .|+ ....+.+...|+
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 33344456667888999998888876542234555677778888889999999988887653 233 334455555666
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009011 418 ARSEEENALKLLQKMEEDL-CKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKND 471 (546)
Q Consensus 418 ~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 471 (546)
..| ++|...++.+.+.. ..+....+.. ..+.-.|+-+.+..+ +++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGLLP--LVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchHHH--HHHHHHhhhHHHHHH-HHhhccc
Confidence 666 47777676665431 1222222223 334556666666555 7766643
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-10 Score=115.35 Aligned_cols=248 Identities=11% Similarity=0.085 Sum_probs=147.7
Q ss_pred hCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCH
Q 009011 153 TQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDT 232 (546)
Q Consensus 153 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 232 (546)
...|..|+..||..+|.-|+..|+++.|- +|.-|.-+. -+++...++.++.+..+.++.+.+. .|.+
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 34788999999999999999999999988 898888755 8888999999999988888876654 7888
Q ss_pred HHHHHHHHHHHccCCHHH---HHHHHHHhhc-----CC--------------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 233 RALSVLMDTLVKGNSVEH---AYKVFLEFKD-----CI--------------PLSSQIFNILIHGWCKTRKVDDAQKAMK 290 (546)
Q Consensus 233 ~~~~~ll~~~~~~g~~~~---a~~~~~~~~~-----~~--------------~~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (546)
.||..|+.+|...||+.. .++.+..+.. +. |.....-...+....-.|-++.+.+++.
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998764 2221111111 00 0000111122222223333333333333
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 009011 291 EMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPD 370 (546)
Q Consensus 291 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 370 (546)
.+......- +...+++-+.. +..-..++........-.|+..+|.+++++-.-+|+++.|..++.+|.+.|++.+
T Consensus 164 ~~Pvsa~~~---p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 164 KVPVSAWNA---PFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred hCCcccccc---hHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 332211000 00011222111 1222233333222221146666777777777777777777777777777776666
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009011 371 TSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSE 421 (546)
Q Consensus 371 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 421 (546)
..-|..++.+ .++...+..++.-|.+.|+.|+..|+..-+..+..+|.
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 6656555544 56666666677777777777777776666665555444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-09 Score=99.40 Aligned_cols=312 Identities=12% Similarity=0.060 Sum_probs=222.5
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHc
Q 009011 167 MVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGV--EKDTRALSVLMDTLVK 244 (546)
Q Consensus 167 ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ll~~~~~ 244 (546)
+..++....+.+++.+=.+.....| .+.+...-+....+.-.+.++++|+.+|+++.+... -.|..+|+.++-+--.
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~g-f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVG-FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 4455556667788877777777644 555555555555556677889999999999987631 2366777776644332
Q ss_pred cCCHH-HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009011 245 GNSVE-HAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDT 323 (546)
Q Consensus 245 ~g~~~-~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l 323 (546)
...+. -|..+ ..-..-.+.|..++.+-|.-.++.++|...|++..+.+.. ....|+.|-.-|....+...|.+-
T Consensus 312 ~skLs~LA~~v----~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 312 KSKLSYLAQNV----SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hHHHHHHHHHH----HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 22221 12222 1223345567788888888889999999999999887654 567888888899999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 324 LKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVV 403 (546)
Q Consensus 324 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 403 (546)
++..++-. +.|-..|-.+.++|.-.+...=|+-.|++..+.. +-|...|.+|.++|.+.+++++|...|......|-
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d- 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD- 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-
Confidence 99988873 4477888889999999999999999999988764 55888999999999999999999999998887552
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 009011 404 PNVLTYNTMISSACARSEEENALKLLQKMEED----LCKPD--CETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAG 477 (546)
Q Consensus 404 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 477 (546)
.+...+..+...|-+.++.++|...|++-.+. |..-+ .....-|...+.+.+++++|.......... .+...
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~e 541 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECE 541 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHH
Confidence 35578888999999999999998888876552 32222 122223455677888888888776665554 34445
Q ss_pred HHHHHHHHHHHc
Q 009011 478 TYASLVRGLIES 489 (546)
Q Consensus 478 ~~~~li~~~~~~ 489 (546)
--..|++.+.+.
T Consensus 542 eak~LlReir~~ 553 (559)
T KOG1155|consen 542 EAKALLREIRKI 553 (559)
T ss_pred HHHHHHHHHHHh
Confidence 555565555443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.3e-10 Score=100.43 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHh
Q 009011 199 TMSTIMRRLVRGGRYDDAVEAFRGM 223 (546)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m 223 (546)
.+..+...+...|++++|.+.+++.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~ 57 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKA 57 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3333444444444444444444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.8e-10 Score=100.93 Aligned_cols=199 Identities=12% Similarity=0.069 Sum_probs=137.8
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLM 239 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 239 (546)
....+..+...+...|++++|.+.+++..+ . .+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~-~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALE-H-DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 356788899999999999999999999987 3 56677888888999999999999999999887754 44566677777
Q ss_pred HHHHccCCHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDC--IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDF 317 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 317 (546)
..+...|++++|.+.+++.... .+.....+..+...+...|++++|...+++....... +...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCH
Confidence 7777788888888888776542 2333445566666666777777777777666654322 344555566666666666
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 318 RKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMK 363 (546)
Q Consensus 318 ~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 363 (546)
++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6666666666554 23344444455555556666666666555544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.8e-10 Score=113.40 Aligned_cols=251 Identities=12% Similarity=0.050 Sum_probs=160.6
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009011 246 NSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCK---------TRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKD 316 (546)
Q Consensus 246 g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 316 (546)
++.++|.+.|++..+..|.+...|..+..++.. .+++++|...+++..+..+. +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 346788888888887777777777777665542 23477888888888776543 56677777777778888
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009011 317 FRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFED 396 (546)
Q Consensus 317 ~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 396 (546)
+++|...+++..+.+ +.+...+..+...+...|++++|...+++..+.+.. +...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 888888888887764 224566777777888888888888888888776522 223333344445667888888888887
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhC-CCCC
Q 009011 397 MKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCET-YAPLLKMCCRKKRMKVLNFLLTHMFKN-DVSM 474 (546)
Q Consensus 397 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~ 474 (546)
+.+...+-+...+..+..++...|+.++|...+.++... .|+..+ .+.+...|...| +.+...++.+.+. ...+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 765432224445666677777888888888888776554 344333 334444555555 4666666665551 1111
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009011 475 DAGTYASLVRGLIESGKLELACSFFEEMISKG 506 (546)
Q Consensus 475 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 506 (546)
....+ +-..+.-.|+.+.+..+ +++.+.|
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 11122 33334445666666555 6666553
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.9e-09 Score=97.00 Aligned_cols=364 Identities=11% Similarity=0.046 Sum_probs=224.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-HHHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVS-LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKD-TRALSVLMD 240 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~ 240 (546)
.+-....-+-++|++++|++.+.+..+ ..|+ +..|.....+|...|+++++++.--+..+. .|+ +..+..-..
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRAS 191 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHH
Confidence 344556677789999999999999988 3344 888999999999999999998888777654 444 446666667
Q ss_pred HHHccCCHHHHHHHHHHh--hcCCCC--------------------------------CHHHHHHHHHHHHh--------
Q 009011 241 TLVKGNSVEHAYKVFLEF--KDCIPL--------------------------------SSQIFNILIHGWCK-------- 278 (546)
Q Consensus 241 ~~~~~g~~~~a~~~~~~~--~~~~~~--------------------------------~~~~~~~li~~~~~-------- 278 (546)
++...|++++|..-.... .+++.. +....++....+..
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~ 271 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN 271 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence 788888888875433221 111111 10000000000000
Q ss_pred -cC----CHHHHHHHHHH------------HHHC------CCC---CCHHHHHHHHHH-------HHhcCChhHHHHHHH
Q 009011 279 -TR----KVDDAQKAMKE------------MFQQ------GFS---PDVVSYTCFIEH-------YCREKDFRKVDDTLK 325 (546)
Q Consensus 279 -~g----~~~~a~~~~~~------------m~~~------g~~---~~~~~~~~li~~-------~~~~g~~~~a~~l~~ 325 (546)
.. ...++.+.+.. +.+. ... .|... ..+..+ +.-.|+.-.|..-|+
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l-e~~A~al~~~gtF~fL~g~~~~a~~d~~ 350 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL-EYMAEALLLRGTFHFLKGDSLGAQEDFD 350 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH-HHHHHHHHHhhhhhhhcCCchhhhhhHH
Confidence 00 00011111100 0000 000 00000 111111 122356666666677
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009011 326 EMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPN 405 (546)
Q Consensus 326 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 405 (546)
..+.....++. .|.-+..+|....+.++..+.|.+..+.+ +.+..+|..-..++.-.+++++|..=|++.+..... +
T Consensus 351 ~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~ 427 (606)
T KOG0547|consen 351 AAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-N 427 (606)
T ss_pred HHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-h
Confidence 66665433332 26666677888888888888888888776 335566666666677778888888888888765422 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----CCHHH--
Q 009011 406 VLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVS-----MDAGT-- 478 (546)
Q Consensus 406 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-----~~~~~-- 478 (546)
...|-.+.-+..+.+++++++..|++.++. ++-.+..|+.....+...++++.|.+.|+...+.... .+...
T Consensus 428 ~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV 506 (606)
T KOG0547|consen 428 AYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLV 506 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhh
Confidence 556666666667788888888888888776 4555678888888888888999999888888774322 11111
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHH
Q 009011 479 YASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLA 538 (546)
Q Consensus 479 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 538 (546)
.-.++..-- .+++..|..++++..+...+ ....|..|...-.+.|+.++|.++|+.--
T Consensus 507 ~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 507 HKALLVLQW-KEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhhHhhhch-hhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 112222112 27888888888888865421 34567788888888899999998887654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-08 Score=101.75 Aligned_cols=294 Identities=14% Similarity=0.164 Sum_probs=183.5
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc--
Q 009011 167 MVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVK-- 244 (546)
Q Consensus 167 ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-- 244 (546)
...++...|++++|++.++.-.. . .......+......+.+.|+.++|..+|..+.+.+ +.+..-|..+..+..-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~-~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEK-Q-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhh-h-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhc
Confidence 45667788888888888877655 3 55556677777888888888888888888888764 3344444555554422
Q ss_pred ---cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 009011 245 ---GNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVD-DAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKV 320 (546)
Q Consensus 245 ---~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 320 (546)
..+.+...++++++....|.....-..-+. +.....+. .+...+..+...|++ + +|+.+-..|....+.+-.
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~-~~~g~~F~~~~~~yl~~~l~KgvP-s--lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLD-FLEGDEFKERLDEYLRPQLRKGVP-S--LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhcc-cCCHHHHHHHHHHHHHHHHhcCCc-h--HHHHHHHHHcChhHHHHH
Confidence 235677777787777666544333222222 22222232 345556666666654 2 345555556655555555
Q ss_pred HHHHHHHHHc----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009011 321 DDTLKEMQEK----G----------CKPSV--ITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKA 384 (546)
Q Consensus 321 ~~l~~~m~~~----g----------~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 384 (546)
.+++...... + -.|+. +++..+...|...|++++|++++++.++.. +..+..|..-...|-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence 5555555432 1 12333 244555666777888888888888877764 33466777777778888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--------HHHHHHHHhcCC
Q 009011 385 GRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETY--------APLLKMCCRKKR 456 (546)
Q Consensus 385 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--------~~ll~~~~~~g~ 456 (546)
|++++|.+.++...+.... |...-+..+..+.+.|+.++|.+++......+..|....+ .....+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888888887765433 5555566677777888888888888777665543322111 223345667777
Q ss_pred hHHHHHHHHHHHh
Q 009011 457 MKVLNFLLTHMFK 469 (546)
Q Consensus 457 ~~~a~~~~~~m~~ 469 (546)
+..|...|..+.+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.5e-09 Score=102.64 Aligned_cols=282 Identities=15% Similarity=0.172 Sum_probs=152.2
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-----Ch
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGG-----RY 213 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g-----~~ 213 (546)
++...|+....-.. ..+......+......|.+.|+.++|..++..+.+ . +|.+..-|..+..+..-.. ..
T Consensus 18 g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~-r-NPdn~~Yy~~L~~~~g~~~~~~~~~~ 93 (517)
T PF12569_consen 18 GDYEEALEHLEKNE--KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELID-R-NPDNYDYYRGLEEALGLQLQLSDEDV 93 (517)
T ss_pred CCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-H-CCCcHHHHHHHHHHHhhhcccccccH
Confidence 45566666654432 33334445566667777777777777777777766 2 4555555555555553222 34
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHh-hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009011 214 DDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAY-KVFLEF-KDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKE 291 (546)
Q Consensus 214 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~-~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 291 (546)
+...++|+++... -|.......+.-.+.....+.... ..+... .+|+| .+|+.|-..|....+.+-..+++..
T Consensus 94 ~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 94 EKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred HHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHH
Confidence 5556666666543 233333322222222222222222 222222 22333 3455665666655555555555555
Q ss_pred HHHC----C----------CCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 009011 292 MFQQ----G----------FSPDVV--SYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPS-VITYTIVMHALGKAKQINE 354 (546)
Q Consensus 292 m~~~----g----------~~~~~~--~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~ 354 (546)
.... + -.|+.. ++..+...|...|++++|++++++.++. .|+ +..|..-.+.+-+.|++.+
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHH
Confidence 4332 0 112332 3344455666677777777777776665 233 4566666666777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH------H--HHHHHHHHhcCCHHHHH
Q 009011 355 ALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLT------Y--NTMISSACARSEEENAL 426 (546)
Q Consensus 355 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~------~--~~li~~~~~~g~~~~A~ 426 (546)
|.+.++.....+. -|...-+-.+..+.++|++++|.+++......+..|.... | .....+|.+.|++..|+
T Consensus 247 Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 247 AAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 7777777766653 3666666666777777777777777776655443222111 1 22344566666666666
Q ss_pred HHHHHH
Q 009011 427 KLLQKM 432 (546)
Q Consensus 427 ~~~~~m 432 (546)
+.|..+
T Consensus 326 k~~~~v 331 (517)
T PF12569_consen 326 KRFHAV 331 (517)
T ss_pred HHHHHH
Confidence 666554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-10 Score=101.69 Aligned_cols=232 Identities=11% Similarity=0.032 Sum_probs=180.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009011 269 FNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGK 348 (546)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~ 348 (546)
-+.+.++|.+.|.+.+|++.|+.-... .|-+.||-.|-++|.+..+.+.|+.++.+-.+. .+-|+.....+.+.+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 466788888888888888888887766 456667778888888888888888888887765 33344444556677777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009011 349 AKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKL 428 (546)
Q Consensus 349 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 428 (546)
.++.++|.++|+...+.. +.++....++...|.-.++++.|+..++.+.+.|+. +...|+.+.-+|.-.+++|-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 888888889888888764 456667777777888888899999999988888876 778888888888888888888888
Q ss_pred HHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009011 429 LQKMEEDLCKPDC--ETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKG 506 (546)
Q Consensus 429 ~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 506 (546)
|++....--.|+. ..|-.+-......|++..|.+-|+-....+.. +...++.|.-.-.+.|++++|..+++...+..
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 8887765433443 45666767777888888888888888877655 67788888888888899999999988887543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.4e-12 Score=82.45 Aligned_cols=49 Identities=39% Similarity=0.781 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009011 299 PDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALG 347 (546)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~ 347 (546)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.1e-08 Score=93.07 Aligned_cols=353 Identities=16% Similarity=0.143 Sum_probs=241.2
Q ss_pred CChhHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHT-PEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAV 217 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 217 (546)
...+.|.+++.|+. ..+|| +.-|....-.|...|+|+++.+--.+..+. .+.-...+..-..++-+.|++++|+
T Consensus 129 kkY~eAIkyY~~AI---~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~eal 203 (606)
T KOG0547|consen 129 KKYDEAIKYYTQAI---ELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDEAL 203 (606)
T ss_pred ccHHHHHHHHHHHH---hcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHHHH
Confidence 36788999999996 46788 778999999999999999888776666552 2222333433344444445554443
Q ss_pred ----------------------HHHHH---------hhhCC--CCCCHHHHHHHHHHHHcc--------C----------
Q 009011 218 ----------------------EAFRG---------MKKYG--VEKDTRALSVLMDTLVKG--------N---------- 246 (546)
Q Consensus 218 ----------------------~~~~~---------m~~~~--~~~~~~~~~~ll~~~~~~--------g---------- 246 (546)
+++++ |.+.+ +.|......+....+... +
T Consensus 204 ~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~ 283 (606)
T KOG0547|consen 204 FDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEA 283 (606)
T ss_pred HhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHH
Confidence 22221 11112 335555444444433210 0
Q ss_pred ----------CHHHHHHHHHHhhc----CCC---CCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 009011 247 ----------SVEHAYKVFLEFKD----CIP---LSS------QIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVS 303 (546)
Q Consensus 247 ----------~~~~a~~~~~~~~~----~~~---~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 303 (546)
.+..|.+.+.+-.. ... .|. .+.+.-.-.+.-.|+.-.|..-|+..+.....++. .
T Consensus 284 l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-l 362 (606)
T KOG0547|consen 284 LEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-L 362 (606)
T ss_pred HHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-H
Confidence 11122222211100 001 111 11122222334468888999999999887554332 3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 009011 304 YTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSK 383 (546)
Q Consensus 304 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 383 (546)
|-.+...|....+.++..+.|+...+.+.. |..+|..-...+.-.+++++|..-|++.+... +.+...|-.+..+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHH
Confidence 777888899999999999999999887543 55667777777777889999999999998875 4467777777777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------HHHH--HHHHHHHHhc
Q 009011 384 AGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPD-------CETY--APLLKMCCRK 454 (546)
Q Consensus 384 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~~~--~~ll~~~~~~ 454 (546)
.++++++...|++.+++ ++..+..|+.....+...++++.|.+.|+..++. .|+ ...+ -.++. +--.
T Consensus 441 ~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~-~qwk 516 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLV-LQWK 516 (606)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhh-hchh
Confidence 99999999999999885 3446789999999999999999999999998875 233 1111 11221 2234
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009011 455 KRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 455 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (546)
+++..|..++.+..+.+++ ....|..|...-.+.|+.++|+++|++...
T Consensus 517 ~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 517 EDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8999999999999998877 567899999999999999999999998764
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.6e-08 Score=93.73 Aligned_cols=285 Identities=16% Similarity=0.083 Sum_probs=216.6
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009011 229 EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFI 308 (546)
Q Consensus 229 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 308 (546)
..+......-.+-+-..+++.+..++++.+.+..|.....+-.-|.++.+.|+..+-..+=.++.+.-+. ...+|-++.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHH
Confidence 3444445555556677888999999999888888888888888888899999888888877788776443 678888888
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC
Q 009011 309 EHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSD--DCLPDTSFYSSLIFILSKAGR 386 (546)
Q Consensus 309 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~ 386 (546)
..|...|+..+|.+.|.+...-+.. =...|-.....|+-.|.-|+|+..|...-+. |+. -+..| +.--|.+.++
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~n 395 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTNN 395 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhcc
Confidence 8888889999999999887654322 1236778888888899999999888777654 221 12222 4445788899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCC-CHHHHHHHHHHHHhcCChHHH
Q 009011 387 VKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEED----L-CKP-DCETYAPLLKMCCRKKRMKVL 460 (546)
Q Consensus 387 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~p-~~~~~~~ll~~~~~~g~~~~a 460 (546)
++-|.++|.+..... +-|+...+-+.-.....+.+.+|..+|+..... + -.+ -..+++.|..+|.+.+..++|
T Consensus 396 ~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999999888643 336777777777777778899999999887622 1 011 234678888889999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 461 NFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLE 522 (546)
Q Consensus 461 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 522 (546)
+..++.......+ +..+|.++.-.|...|+++.|.+.|.+.. .+.|+..+...++..+.
T Consensus 475 I~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 475 IDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence 9999999887655 88899999999999999999999999888 67788877776666543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.3e-07 Score=89.40 Aligned_cols=394 Identities=14% Similarity=0.110 Sum_probs=238.2
Q ss_pred HHHHHHhhc-CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 009011 130 VEQTLRRFS-NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLV 208 (546)
Q Consensus 130 ~~~~l~~~~-~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~ 208 (546)
+...++.+. ......+++..-+.. ++.--.++.....-.+...|+-++|.+....-.+ + +..+..+|+.+.-.+.
T Consensus 11 F~~~lk~yE~kQYkkgLK~~~~iL~--k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr-~-d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 11 FRRALKCYETKQYKKGLKLIKQILK--KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR-N-DLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH--hCCccchhHHhccchhhcccchHHHHHHHHHHhc-c-CcccchhHHHHHHHHh
Confidence 344444332 233444555555543 3333334444445556677888888888877766 5 7777888888877777
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009011 209 RGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKA 288 (546)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 288 (546)
...++++|+..|......+ +.|...+.-+.-.-++.|+++.....-....+..|.....|..++.++.-.|+...|..+
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888887654 555666655555556677777776666666666666777788888888888888888888
Q ss_pred HHHHHHCC-CCCCHHHHHHHH------HHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHH
Q 009011 289 MKEMFQQG-FSPDVVSYTCFI------EHYCREKDFRKVDDTLKEMQEKGCKPSVITY-TIVMHALGKAKQINEALKVYE 360 (546)
Q Consensus 289 ~~~m~~~g-~~~~~~~~~~li------~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~a~~~~~ 360 (546)
+++..+.. -.|+...|.... ....+.|.+++|.+.+..-... + .|...+ ..-...+.+.+++++|..++.
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 88887664 245555544332 2345567777777766654433 1 122222 234456677888888888888
Q ss_pred HHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHH-HHHHHHHH----------------------------------CCCCC
Q 009011 361 KMKSDDCLPDTSFYSS-LIFILSKAGRVKDAN-EIFEDMKK----------------------------------QGVVP 404 (546)
Q Consensus 361 ~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~-~~~~~~~~----------------------------------~~~~p 404 (546)
.+...+ ||..-|.. +..++.+..+.-++. .+|....+ +|+++
T Consensus 244 ~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~ 321 (700)
T KOG1156|consen 244 RLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS 321 (700)
T ss_pred HHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc
Confidence 888764 55554443 333443333323333 44443332 22221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------HCC----------CCCCHH--HHHHHHHHHHhcCChHHHHHHH
Q 009011 405 NVLTYNTMISSACARSEEENALKLLQKME--------EDL----------CKPDCE--TYAPLLKMCCRKKRMKVLNFLL 464 (546)
Q Consensus 405 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~~----------~~p~~~--~~~~ll~~~~~~g~~~~a~~~~ 464 (546)
++..+...|- ++.++- +++++. ..| -+|... |+-.++..+-+.|+++.|..++
T Consensus 322 ---vf~dl~SLyk---~p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yI 394 (700)
T KOG1156|consen 322 ---VFKDLRSLYK---DPEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYI 394 (700)
T ss_pred ---hhhhhHHHHh---chhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 1222222221 111111 232221 111 134443 3445666777888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHh
Q 009011 465 THMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAK 541 (546)
Q Consensus 465 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 541 (546)
+......+. -+..|-.-.+.+...|++++|..++++..+.. .+|..+-..-.....+.++.++|.++.....+.+
T Consensus 395 d~AIdHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 395 DLAIDHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHhccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 888875332 23455555677788888888888888888664 3455554456666778888888888887776544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-11 Score=80.90 Aligned_cols=49 Identities=45% Similarity=0.715 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 404 PNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCC 452 (546)
Q Consensus 404 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 452 (546)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.9e-09 Score=94.83 Aligned_cols=235 Identities=14% Similarity=0.087 Sum_probs=167.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
++.=-+-+..+|.+.|.+.+|..-|+.-.+. .|-+.||..|-.+|.+..+.+.|..++.+-.+.+|.++....-+.+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHH
Confidence 3333456677788888888888888777654 56777777788888888888888888887777777777777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 276 WCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEA 355 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 355 (546)
+-..++.++|.++++...+.... ++.....+...|.-.++.+-|+.+|+.+.+.|+. +...|+.+.-+|.-.+++|.+
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhh
Confidence 88888888888888877765322 4445555556666777888888888888888766 666777777777777888888
Q ss_pred HHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 356 LKVYEKMKSDDCLPD--TSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKME 433 (546)
Q Consensus 356 ~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 433 (546)
+.-|.+....-..|+ ..+|..+-......|++..|.+.|+-....+.. ....+|.|...-.+.|++++|..++....
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 777777665433333 345555666666777777777777777654432 45667777776777788888877777765
Q ss_pred HC
Q 009011 434 ED 435 (546)
Q Consensus 434 ~~ 435 (546)
..
T Consensus 457 s~ 458 (478)
T KOG1129|consen 457 SV 458 (478)
T ss_pred hh
Confidence 53
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-07 Score=87.13 Aligned_cols=304 Identities=13% Similarity=0.026 Sum_probs=220.1
Q ss_pred CCHHHHHHHHHhhcC-ChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 009011 125 VSNSLVEQTLRRFSN-DLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTI 203 (546)
Q Consensus 125 ~~~~~~~~~l~~~~~-~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~l 203 (546)
++...+..+...|+. +...+...|..+....-++.|.+....+.+.+...|+.++|...|+.... - ++.+...+..-
T Consensus 195 dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~-~-dpy~i~~MD~Y 272 (564)
T KOG1174|consen 195 DWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC-A-NPDNVEAMDLY 272 (564)
T ss_pred cHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh-C-ChhhhhhHHHH
Confidence 445556666665543 44455555666656677888999999999999999999999999998876 3 45555555555
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 204 MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVD 283 (546)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 283 (546)
.-.+.+.|++++...+...+.... .-+..-|-.-+..+....+++.|..+-++..+..+.+...+-.-...+...|+.+
T Consensus 273 a~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~ 351 (564)
T KOG1174|consen 273 AVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHT 351 (564)
T ss_pred HHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchH
Confidence 666778888888887777775432 2334444444455566778888888888877766777777766677788889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHH
Q 009011 284 DAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVM-HALG-KAKQINEALKVYEK 361 (546)
Q Consensus 284 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li-~~~~-~~g~~~~a~~~~~~ 361 (546)
+|.-.|+......+ -+...|.-|+..|...|++.+|.-+-+...+. +.-+..+.+.+. ..|. ....-++|.+++++
T Consensus 352 ~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 352 QAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred HHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHh
Confidence 99988988776532 37789999999999999999988777665543 233555555552 3332 23345788888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009011 362 MKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDL 436 (546)
Q Consensus 362 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 436 (546)
-.+.. +.-....+.+...+...|+.+++..+++..... .||....+.+...+...+.+.+|++.|......+
T Consensus 430 ~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 430 SLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred hhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 77653 223456677888888899999999999988753 5888888999999999999999999998887753
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.6e-08 Score=94.43 Aligned_cols=284 Identities=12% Similarity=0.038 Sum_probs=217.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 009011 193 GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNIL 272 (546)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 272 (546)
...+.+....-.+-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+-.++.+..|..+.+|.++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhH
Confidence 33456666666777788889999999998887754 67777777777788888888887777788888888889999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--C-CCCCHHHHHHHHHHHHhc
Q 009011 273 IHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEK--G-CKPSVITYTIVMHALGKA 349 (546)
Q Consensus 273 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g-~~p~~~~~~~li~~~~~~ 349 (546)
.-.|.-.|+..+|++.|.+....... =...|-.+...|+-.|..++|+..+...-+. | ..| +--+.--|.+.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP----~LYlgmey~~t 393 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP----SLYLGMEYMRT 393 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch----HHHHHHHHHHh
Confidence 99999999999999999887654222 2457888888888899999998888776653 3 223 22344567788
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHhcCCHH
Q 009011 350 KQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ--GVV----PNVLTYNTMISSACARSEEE 423 (546)
Q Consensus 350 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~----p~~~~~~~li~~~~~~g~~~ 423 (546)
++.+.|.+.|.+..... +.|+.+.+-+.-.....+.+.+|...|+..... .+. ....+++.|..+|.+.+..+
T Consensus 394 ~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred ccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 99999999999887763 557888888877777888899999998877621 111 13456778888899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009011 424 NALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGL 486 (546)
Q Consensus 424 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 486 (546)
+|+..+++..... +.+..++..+.-.|...|+++.|...|.+... +.||..+-..++..+
T Consensus 473 eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 473 EAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 9999999988764 66788899998889999999999999988775 456666666655543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-08 Score=98.60 Aligned_cols=241 Identities=22% Similarity=0.198 Sum_probs=139.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc-----C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC--C
Q 009011 303 SYTCFIEHYCREKDFRKVDDTLKEMQEK-----G-CKPSVIT-YTIVMHALGKAKQINEALKVYEKMKSD-----DC--L 368 (546)
Q Consensus 303 ~~~~li~~~~~~g~~~~a~~l~~~m~~~-----g-~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~--~ 368 (546)
+...+...|...|+++.|..+++...+. | ..|...+ .+.+...|...+++++|..+|+++... |- +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3333555555555555555555544432 1 1122222 223555666677777777777666432 11 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---C--CCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCC
Q 009011 369 PDTSFYSSLIFILSKAGRVKDANEIFEDMKK---Q--GVV-PNV-LTYNTMISSACARSEEENALKLLQKMEED---LCK 438 (546)
Q Consensus 369 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~--~~~-p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~ 438 (546)
--..+++.|..+|.+.|++++|...++...+ . |.. |.+ ..++.+...++..+++++|..++++..+. -..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1234555566667777777776666665432 1 111 122 12445556667777777777777765432 111
Q ss_pred CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---
Q 009011 439 PD----CETYAPLLKMCCRKKRMKVLNFLLTHMFKN----DV---SMDAGTYASLVRGLIESGKLELACSFFEEMIS--- 504 (546)
Q Consensus 439 p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--- 504 (546)
++ ..+++.|...|...|++++|.++++++... +- .-....++.+...|.+.+++.+|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 356777777788888888888877776551 11 11234567777777778888878777776442
Q ss_pred -CCCC-CC-HHHHHHHHHHHHhcChhhHHHHHHHHHHHHhhh
Q 009011 505 -KGIV-PY-HSTYKMLEEKLEKKRLGNAKERINKLLAHAKEQ 543 (546)
Q Consensus 505 -~g~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 543 (546)
.|.. |+ ..+|..|...|...|++|+|.++...+...+++
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~ 482 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQ 482 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 2321 22 346777788888888888888888777665554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-06 Score=81.40 Aligned_cols=279 Identities=10% Similarity=0.001 Sum_probs=145.8
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009011 252 YKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVV-SYTCFIEHYCREKDFRKVDDTLKEMQEK 330 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~l~~~m~~~ 330 (546)
..++-+....++.|+.....+.+.+...|+.++|+..|++..... |+.. ......-.+.+.|+++....+...+...
T Consensus 218 t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~ 295 (564)
T KOG1174|consen 218 TFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK 295 (564)
T ss_pred HHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh
Confidence 334444455677788888888888888888888888888776542 2211 1111112234566666666666655543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 009011 331 GCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYN 410 (546)
Q Consensus 331 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 410 (546)
.- -+...|..-........+++.|+.+-++.++.+ +-+...|-.=...+...|++++|.-.|+...... +-+...|.
T Consensus 296 ~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~ 372 (564)
T KOG1174|consen 296 VK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYR 372 (564)
T ss_pred hh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHH
Confidence 21 112222222233334456666666666655543 2233334333344556666666666666655432 12556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 009011 411 TMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLL-KMCC-RKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIE 488 (546)
Q Consensus 411 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll-~~~~-~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 488 (546)
-++..|...|.+.+|..+-....+. +..+..+...+. ..|. ....-++|..+++...+..+. -....+.+...+..
T Consensus 373 GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~ 450 (564)
T KOG1174|consen 373 GLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQV 450 (564)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHh
Confidence 6666666666666666555444332 123333333331 1111 122235555555555543222 22334445555556
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 009011 489 SGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAH 539 (546)
Q Consensus 489 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 539 (546)
.|+.++++.+++... ...||....+.+.+.+...+..+++...+...-+
T Consensus 451 Eg~~~D~i~LLe~~L--~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 451 EGPTKDIIKLLEKHL--IIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred hCccchHHHHHHHHH--hhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 666666666666655 2345666666666666666666655555544433
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.6e-08 Score=97.01 Aligned_cols=241 Identities=17% Similarity=0.157 Sum_probs=131.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC-----CC-CCCHHHH-HHHHHHHHccCCHHHHHHHHHHhhc-----
Q 009011 193 GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY-----GV-EKDTRAL-SVLMDTLVKGNSVEHAYKVFLEFKD----- 260 (546)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~----- 260 (546)
.|.-..+...+...|...|+++.|..+++...+. |. .|...+. +.+...|...+++.+|..+|+++..
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3333444444555555555555555555444321 10 1222222 2244445555555555555544321
Q ss_pred ---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-CCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009011 261 ---CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ-----GFS-PDV-VSYTCFIEHYCREKDFRKVDDTLKEMQEK 330 (546)
Q Consensus 261 ---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~-~~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 330 (546)
..|.-..+++.|...|.+.|++++|...+++..+. |.. |.+ ..++.+...++..+++++|..++....+.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 12222334555666666666666666665554321 111 122 23445556666777777777776654432
Q ss_pred ---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009011 331 ---GCKP----SVITYTIVMHALGKAKQINEALKVYEKMKSD----DC---LPDTSFYSSLIFILSKAGRVKDANEIFED 396 (546)
Q Consensus 331 ---g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 396 (546)
-..+ -..+++.+...|.+.|++++|.++|+++... +. .-....++.+...|.+.+++++|.++|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 1111 2356777777788888888888777776532 11 11245566777777777777777777765
Q ss_pred HHH----CCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 397 MKK----QGVV-P-NVLTYNTMISSACARSEEENALKLLQKME 433 (546)
Q Consensus 397 ~~~----~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 433 (546)
... .|.. | ...+|..|...|.+.|+++.|.++.+.+.
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 432 2321 2 23567777888888888888888777664
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.3e-06 Score=79.40 Aligned_cols=365 Identities=12% Similarity=0.137 Sum_probs=189.9
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC------CCCCHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYG------VEKDTRALS 236 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~ 236 (546)
+|...+......+-++.+..+++...+. . +..-+.-|..+++.+++++|.+.+....... .+-+-..|.
T Consensus 140 IW~lyl~Fv~~~~lPets~rvyrRYLk~--~---P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 140 IWDLYLKFVESHGLPETSIRVYRRYLKV--A---PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhc--C---HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 3444444445555555566666555541 1 2223333666666666666666665553211 123333444
Q ss_pred HHHHHHHccCCHH---HHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 237 VLMDTLVKGNSVE---HAYKVFLEFKDCIPLS-SQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYC 312 (546)
Q Consensus 237 ~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 312 (546)
.+.+..++.-+.- ....++......++.. ...|++|.+.|.+.|.+++|.++|++....- .+..-|+.+.++|+
T Consensus 215 elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYA 292 (835)
T ss_pred HHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHH
Confidence 4444444332221 1222333322222221 2457888888888888888888888877652 24445556666665
Q ss_pred hcCC----------------------hhHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 313 REKD----------------------FRKVDDTLKEMQEKG-----------CKPSVITYTIVMHALGKAKQINEALKVY 359 (546)
Q Consensus 313 ~~g~----------------------~~~a~~l~~~m~~~g-----------~~p~~~~~~~li~~~~~~g~~~~a~~~~ 359 (546)
.-.. ++-.+.-|+.+...+ -+.++..|..-+. ...|+..+-...|
T Consensus 293 ~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~ty 370 (835)
T KOG2047|consen 293 QFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTY 370 (835)
T ss_pred HHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHH
Confidence 3211 111222222222221 1112223322222 2245566666677
Q ss_pred HHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 360 EKMKSDDCLP------DTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPN---VLTYNTMISSACARSEEENALKLLQ 430 (546)
Q Consensus 360 ~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~ 430 (546)
.+..+. +.| -...|..+...|-..|+++.|..+|++..+-..+-- ..+|..-...=.++.+++.|+++++
T Consensus 371 teAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~ 449 (835)
T KOG2047|consen 371 TEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMR 449 (835)
T ss_pred HHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 666543 122 234677788888888999999999988876433211 2344444455556778888888877
Q ss_pred HHHHCC-----------CCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---------------------
Q 009011 431 KMEEDL-----------CKP------DCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDV--------------------- 472 (546)
Q Consensus 431 ~m~~~~-----------~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--------------------- 472 (546)
.....- .++ +...|...+..--..|-++....+++.+.+..+
T Consensus 450 ~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfee 529 (835)
T KOG2047|consen 450 RATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEE 529 (835)
T ss_pred hhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHH
Confidence 764321 111 112344444444456666666666666654322
Q ss_pred -------------CCC-HHHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHH-HHHHH-HHHHHhcChhhHHHHH
Q 009011 473 -------------SMD-AGTYASLVRGLIE---SGKLELACSFFEEMISKGIVPYHS-TYKML-EEKLEKKRLGNAKERI 533 (546)
Q Consensus 473 -------------~~~-~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l-~~~~~~~g~~~~a~~~ 533 (546)
.|+ ...|+..+.-+.+ .-+.+.|..+|++..+ |.+|... |...+ ...=.+-|....|..+
T Consensus 530 sFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsi 608 (835)
T KOG2047|consen 530 SFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSI 608 (835)
T ss_pred HHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 122 3456666655543 2357788888888877 4544433 22222 2222334666777777
Q ss_pred HHHHH
Q 009011 534 NKLLA 538 (546)
Q Consensus 534 ~~~m~ 538 (546)
+++..
T Consensus 609 yerat 613 (835)
T KOG2047|consen 609 YERAT 613 (835)
T ss_pred HHHHH
Confidence 66643
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.9e-06 Score=82.80 Aligned_cols=404 Identities=10% Similarity=0.093 Sum_probs=222.5
Q ss_pred CCHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCC--CC--HHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHH
Q 009011 125 VSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYM--HT--PEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATM 200 (546)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~g~~--~~--~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~ 200 (546)
-+...+..+....+..++.....---+..+.|+. +| ...|++|.+.|.+.|.++.|.++|++... ...+..-|
T Consensus 208 Sn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~---~v~tvrDF 284 (835)
T KOG2047|consen 208 SNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQ---TVMTVRDF 284 (835)
T ss_pred chhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---hheehhhH
Confidence 3445555555555554444333222222223332 23 35799999999999999999999999887 44666666
Q ss_pred HHHHHHHHhcCC----------------------hHHHHHHHHHhhhCC-C----------CCCHHHHHHHHHHHHccCC
Q 009011 201 STIMRRLVRGGR----------------------YDDAVEAFRGMKKYG-V----------EKDTRALSVLMDTLVKGNS 247 (546)
Q Consensus 201 ~~li~~~~~~g~----------------------~~~A~~~~~~m~~~~-~----------~~~~~~~~~ll~~~~~~g~ 247 (546)
+.+.+.|++-.. ++-....|+.+...+ + +.++..+..-+. +..|+
T Consensus 285 t~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~ 362 (835)
T KOG2047|consen 285 TQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGN 362 (835)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCC
Confidence 666666654221 111223333332211 0 111112211111 22344
Q ss_pred HHHHHHHHHHhhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChh
Q 009011 248 VEHAYKVFLEFKDCIPLS------SQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPD---VVSYTCFIEHYCREKDFR 318 (546)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~ 318 (546)
..+-...+.+....+.|. ...|..+.+.|-..|+++.|..+|++..+-..+-- ..+|......=.+..+++
T Consensus 363 ~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~ 442 (835)
T KOG2047|consen 363 AAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFE 442 (835)
T ss_pred hHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHH
Confidence 555566666654432222 34588999999999999999999999887643311 345655566666778888
Q ss_pred HHHHHHHHHHHcC-----------CCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009011 319 KVDDTLKEMQEKG-----------CKP------SVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFIL 381 (546)
Q Consensus 319 ~a~~l~~~m~~~g-----------~~p------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 381 (546)
.|+++++....-- .++ +...|...++.--..|-++....+|+.+.+..+. ++.........+
T Consensus 443 ~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfL 521 (835)
T KOG2047|consen 443 AALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFL 521 (835)
T ss_pred HHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 9988887654321 111 2234445555555677888888888888877654 333222223334
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcC
Q 009011 382 SKAGRVKDANEIFEDMKKQGVVPNV-LTYNTMISSACA---RSEEENALKLLQKMEEDLCKPDCETYAPLL--KMCCRKK 455 (546)
Q Consensus 382 ~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll--~~~~~~g 455 (546)
-...-++++.+++++-...-..|+. ..|+..+.-+.+ ...++.|..+|++..+ |++|...-+--|+ ..--+.|
T Consensus 522 Eeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~G 600 (835)
T KOG2047|consen 522 EEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHG 600 (835)
T ss_pred HhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhh
Confidence 4455577777777765443333443 245554444332 2367888888888877 5665542222221 1112345
Q ss_pred ChHHHHHHHHHHHh---------------------CCCCCCHHHHHHHHHH----------------HHHcCChHHHHHH
Q 009011 456 RMKVLNFLLTHMFK---------------------NDVSMDAGTYASLVRG----------------LIESGKLELACSF 498 (546)
Q Consensus 456 ~~~~a~~~~~~m~~---------------------~~~~~~~~~~~~li~~----------------~~~~g~~~~A~~~ 498 (546)
....|+.+++++.. .|+..+...|..-|.. =++.|..+.|..+
T Consensus 601 Lar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaI 680 (835)
T KOG2047|consen 601 LARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAI 680 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 56666666665432 2333333333332221 2345666667666
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHHhcChhhHHHHHHH
Q 009011 499 FEEMISK-GIVPYHSTYKMLEEKLEKKRLGNAKERINK 535 (546)
Q Consensus 499 ~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 535 (546)
+....+- ..+.+...|.+--.-=.+.|+.+...++++
T Consensus 681 ya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 681 YAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred HHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 6655443 223344455565555566676555544444
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-07 Score=81.20 Aligned_cols=197 Identities=15% Similarity=0.050 Sum_probs=129.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009011 339 YTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACA 418 (546)
Q Consensus 339 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 418 (546)
...+.-.|...|+...|.+-+++..+.+ +.+..++..+...|-+.|..+.|.+.|++..+.... +..+.|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 4445566777777777777777777664 335566666777777777777777777777654432 44556666666677
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 009011 419 RSEEENALKLLQKMEEDLCKP-DCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACS 497 (546)
Q Consensus 419 ~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 497 (546)
.|++++|...|++....-..+ -..+|..+.-+..+.|+.+.|...+++..+.+.. ...+.-.+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 777777777777766542111 2346666666666777777777777777776554 34455666666777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 009011 498 FFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAH 539 (546)
Q Consensus 498 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 539 (546)
+++.....+. ++.......|+.-...|+.+.+.++-..+++
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7777766654 6666666666666667777777777666654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.8e-06 Score=82.20 Aligned_cols=146 Identities=15% Similarity=0.104 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 009011 387 VKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQ--------KMEEDLCKPDCETYAPLLKMCCRKKRMK 458 (546)
Q Consensus 387 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 458 (546)
+.+|.+++...-+....-.....-.++......|+++.|.+++. .+.+.+..|. +...+...+.+.++-+
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~ 434 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDND 434 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCc
Confidence 33444444444333222223344555666777888888888888 5555444444 4455566677777777
Q ss_pred HHHHHHHHHHh--CCCCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHH
Q 009011 459 VLNFLLTHMFK--NDVSMDAGTY----ASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKER 532 (546)
Q Consensus 459 ~a~~~~~~m~~--~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 532 (546)
.|..++.+... ..-.+..... ...+..-.+.|+-++|..+++++.+.+ .+|..+...++.+|++- +.+.|+.
T Consensus 435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAES 512 (652)
T ss_pred cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHH
Confidence 77777776654 1111222333 333334457788889999999888753 46777777788777553 4555555
Q ss_pred HHHH
Q 009011 533 INKL 536 (546)
Q Consensus 533 ~~~~ 536 (546)
+-+.
T Consensus 513 l~k~ 516 (652)
T KOG2376|consen 513 LSKK 516 (652)
T ss_pred Hhhc
Confidence 5443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-06 Score=84.95 Aligned_cols=200 Identities=10% Similarity=-0.004 Sum_probs=111.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHH---H
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVS-LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSV---L 238 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---l 238 (546)
.|..+...+...|+.+.+.+.+....+......+ ..........+...|++++|.+++++..+.. +.|...+.. .
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 3444555555566666666666555542211222 2222233444556777788887777776542 334433331 1
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009011 239 MDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFR 318 (546)
Q Consensus 239 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 318 (546)
.......+..+.+.+.+.......+........+...+...|++++|...+++..+.... +...+..+...|...|+++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHH
Confidence 111122344455555554432334444455556666777777777777777777766432 4555666667777777777
Q ss_pred HHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009011 319 KVDDTLKEMQEKGC-KPSV--ITYTIVMHALGKAKQINEALKVYEKMKS 364 (546)
Q Consensus 319 ~a~~l~~~m~~~g~-~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~ 364 (546)
+|...+++...... .|+. ..|..+...+...|++++|..++++...
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 77777777665421 1222 2344566666777777777777777653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.4e-07 Score=86.45 Aligned_cols=308 Identities=10% Similarity=0.015 Sum_probs=179.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCCHHH-HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHH
Q 009011 194 YVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYG-VEKDTRA-LSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNI 271 (546)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 271 (546)
|.....|..+...+...|+.+++...+....+.. ...+... .......+...|++++|.+.+++.....|.+...+..
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 3445566666777777788888777776664432 1223222 2222334567789999999998887777777766553
Q ss_pred HHHHHH----hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009011 272 LIHGWC----KTRKVDDAQKAMKEMFQQGFSPD-VVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHAL 346 (546)
Q Consensus 272 li~~~~----~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~ 346 (546)
...+. ..+..+.+.+.++.. ....|+ ......+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~ 158 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL 158 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 22222 244555555555441 122233 3344455567788899999999999988874 33566777788888
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhc
Q 009011 347 GKAKQINEALKVYEKMKSDDC-LPDT--SFYSSLIFILSKAGRVKDANEIFEDMKKQGV-VPNVLTY-N--TMISSACAR 419 (546)
Q Consensus 347 ~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~-~--~li~~~~~~ 419 (546)
...|++++|...+++..+... .++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 889999999999888776532 1232 3455677888889999999999988754322 1111111 1 222223333
Q ss_pred CCHHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC------CCHHHHHHHH--HHHH
Q 009011 420 SEEENALKL--LQKMEEDLC--KPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVS------MDAGTYASLV--RGLI 487 (546)
Q Consensus 420 g~~~~A~~~--~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~------~~~~~~~~li--~~~~ 487 (546)
|..+.+.++ +........ ............++...|+.+.|..+++.+...... ....+-..++ .++.
T Consensus 239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 433322222 111111100 111122224556677788888888888877662211 0111112222 3345
Q ss_pred HcCChHHHHHHHHHHHHC
Q 009011 488 ESGKLELACSFFEEMISK 505 (546)
Q Consensus 488 ~~g~~~~A~~~~~~m~~~ 505 (546)
..|+.++|.+.+.+....
T Consensus 319 ~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 319 AEGNYATALELLGPVRDD 336 (355)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 778888888888776643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.8e-06 Score=83.15 Aligned_cols=380 Identities=14% Similarity=0.108 Sum_probs=256.0
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC-CCCHHH
Q 009011 156 GYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGV-EKDTRA 234 (546)
Q Consensus 156 g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~ 234 (546)
.+.-|..+|..|.-++..+|+++.+.+.|++... . .......|+.+-..|.-.|.-..|+.+++.-....- ++|...
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~-~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALP-F-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-h-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 4456788999999999999999999999998876 4 566778888999999999999999999988754332 334444
Q ss_pred HHHHHHHHH-ccCCHHHHHHHHHHhhc-----CCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCC
Q 009011 235 LSVLMDTLV-KGNSVEHAYKVFLEFKD-----CIPLSSQIFNILIHGWCKT-----------RKVDDAQKAMKEMFQQGF 297 (546)
Q Consensus 235 ~~~ll~~~~-~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~ 297 (546)
+-..-..|. +.+.++++..+-.++.+ ........|..+.-+|... ....++.+.+++..+.+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 444444444 34777777766655543 1122233444444444322 123467777888777654
Q ss_pred C-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC------
Q 009011 298 S-PDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSD-DCLP------ 369 (546)
Q Consensus 298 ~-~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~------ 369 (546)
. |+..-| +.--|+..++++.|.+..++..+-+-.-+...|..+.-.+.-.+++.+|+.+.+...+. |...
T Consensus 476 ~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 476 TDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred CCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 3 333333 33456777889999999999888766667888888888888889999999988776543 1100
Q ss_pred ------------CHHHHHHHHHHHHh---------cC--------------CHHHHHHHHHHH--------HHCC-----
Q 009011 370 ------------DTSFYSSLIFILSK---------AG--------------RVKDANEIFEDM--------KKQG----- 401 (546)
Q Consensus 370 ------------~~~~~~~li~~~~~---------~g--------------~~~~A~~~~~~~--------~~~~----- 401 (546)
-..|...++..+-. .| +..+|.+....+ ...|
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 01111222221110 00 111111111100 0001
Q ss_pred ----C--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009011 402 ----V--VPN------VLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 402 ----~--~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 469 (546)
+ .|+ ...|......+.+.+..++|...+.+..... +.....|......+...|..++|.+.|.....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 0 111 1234455667778888899988888877653 44556666666778889999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 470 NDVSMDAGTYASLVRGLIESGKLELACS--FFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 470 ~~~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
.++. ++....++...+.+.|+..-|.. ++.++.+.+ +.+...|..+-..+.+.|+.++|-+.|.-.-+..+
T Consensus 713 ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 713 LDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred cCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 7766 77889999999999999888877 999999765 34678899999999999999999999987766544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.3e-07 Score=87.43 Aligned_cols=195 Identities=10% Similarity=-0.014 Sum_probs=97.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009011 234 ALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR 313 (546)
Q Consensus 234 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 313 (546)
.|..+...+...|+.++|...|++..+..|.+...|+.+...+...|++++|...|++..+..+. +..+|..+...+..
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~ 144 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 34455555556666666666666655555556666666666666666666666666666654322 34455555555666
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009011 314 EKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEI 393 (546)
Q Consensus 314 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 393 (546)
.|++++|.+.++...+.. |+..........+...++.++|...+.+..... .++...+ .+. ....|+...+ +.
T Consensus 145 ~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~--~~~lg~~~~~-~~ 217 (296)
T PRK11189 145 GGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIV--EFYLGKISEE-TL 217 (296)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHH--HHHccCCCHH-HH
Confidence 666666666666665542 221111111122233455666666665443321 2221111 111 2223444332 23
Q ss_pred HHHHHHCC---C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009011 394 FEDMKKQG---V---VPNVLTYNTMISSACARSEEENALKLLQKMEEDL 436 (546)
Q Consensus 394 ~~~~~~~~---~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 436 (546)
++.+.+.. + +.....|..+...+.+.|+.++|...|++..+.+
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33333210 0 0112355666666666666666666666666543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3e-07 Score=86.73 Aligned_cols=232 Identities=13% Similarity=0.023 Sum_probs=154.4
Q ss_pred HHcCCChHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCH
Q 009011 171 LGKSKKFCLMWELVKEMDELNNG--YVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSV 248 (546)
Q Consensus 171 ~~~~~~~~~a~~l~~~m~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 248 (546)
....+..+.++.-+.++....+. ......|..+...|...|+.++|+..|++..+.. +.+...|+.+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCH
Confidence 33345667777777777753211 1224557777778888899999999998888754 55678888888888999999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009011 249 EHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQ 328 (546)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 328 (546)
++|...|+...+..|.+..+|..+...+...|++++|.+.|+...+..+ +..........+...++.++|...+++..
T Consensus 115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999999888877777888888888888889999999999998887643 32212222223445678889988887655
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009011 329 EKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSD---DC---LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGV 402 (546)
Q Consensus 329 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 402 (546)
... .|+...+ .+ .....|+...+ +.+..+.+. .. +....+|..+...+.+.|++++|...|++..+.++
T Consensus 193 ~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 193 EKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 432 2332222 22 22334555443 244444322 11 11335788888889999999999999999887542
Q ss_pred CCCHHHHHH
Q 009011 403 VPNVLTYNT 411 (546)
Q Consensus 403 ~p~~~~~~~ 411 (546)
||..-+..
T Consensus 268 -~~~~e~~~ 275 (296)
T PRK11189 268 -YNFVEHRY 275 (296)
T ss_pred -chHHHHHH
Confidence 35444433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-07 Score=82.44 Aligned_cols=326 Identities=13% Similarity=0.140 Sum_probs=213.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHH-HHH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSV-LMD 240 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-ll~ 240 (546)
.-+++.+..+.+..+++.|++++..-.+ . .+.+....+.+..+|....++..|-+.++++-.. -|...-|.. -..
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~E-r-~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELE-R-SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHh-c-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 3477888888999999999999988777 3 5668888888999999999999999999998653 455544432 234
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCHHHHHHH--H--HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009011 241 TLVKGNSVEHAYKVFLEFKDCIPLSSQIFNIL--I--HGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKD 316 (546)
Q Consensus 241 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l--i--~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 316 (546)
.+-+.+.+..|..+...|.+. ....+-. + ......+++..+..++++....| +..+.+.......+.|+
T Consensus 87 SLY~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecccc
Confidence 566778888888888877653 2222222 1 22335678888888888776432 44455555555668899
Q ss_pred hhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC-----------------------
Q 009011 317 FRKVDDTLKEMQEK-GCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCL--PD----------------------- 370 (546)
Q Consensus 317 ~~~a~~l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~----------------------- 370 (546)
++.|.+-|+...+- |.. ....|+..+.- .+.|+++.|++...++++.|+. |.
T Consensus 160 yEaAvqkFqaAlqvsGyq-pllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQ-PLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred HHHHHHHHHHHHhhcCCC-chhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence 99999999888765 455 45567765544 4678899999999999988876 31
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009011 371 ---TSFYSSLIFILSKAGRVKDANEIFEDMKKQ-GVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAP 446 (546)
Q Consensus 371 ---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 446 (546)
+..+|.-...+.+.|+++.|.+.+..|.-+ .-..|++|...+.-.- ..+++.+..+-+.-+.+.+ +-...||..
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFAN 315 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFAN 315 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHH
Confidence 011222233345678888888888877532 2345667766544322 2345555555555565554 344578888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH-HcCChHHHHHHHHHHH
Q 009011 447 LLKMCCRKKRMKVLNFLLTHMFKNDVS-MDAGTYASLVRGLI-ESGKLELACSFFEEMI 503 (546)
Q Consensus 447 ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~ 503 (546)
++-.||+..-++.|..++.+--..... .+...|+ ++.++. ..-..++|.+-++.+.
T Consensus 316 lLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 888899888888888887653322111 1233333 334443 3456777777766654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.2e-07 Score=78.31 Aligned_cols=197 Identities=11% Similarity=0.013 Sum_probs=134.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 009011 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLV 243 (546)
Q Consensus 164 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 243 (546)
.-.|.-.|...|++..|.+-+++..+ . ++.+..+|..+...|.+.|..+.|.+.|++..+.. +.+..+.|.....+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~-~-DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE-H-DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-h-CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45566677777888888877777777 3 56667777777777777777777777777776653 455666777777777
Q ss_pred ccCCHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009011 244 KGNSVEHAYKVFLEFKD--CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVD 321 (546)
Q Consensus 244 ~~g~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 321 (546)
..|.+++|...|++... ..+.-..+|..+.-+..+.|+.+.|...|++..+.... ...+.-.+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 77777777777766654 34445566777777777777777777777777665433 2344555666666777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009011 322 DTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSD 365 (546)
Q Consensus 322 ~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 365 (546)
.+++.....+. ++..+.-..|+.--..|+.+.+.++=..+...
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77777766655 56666666666666677777666655555443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-05 Score=77.12 Aligned_cols=365 Identities=12% Similarity=0.126 Sum_probs=203.0
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVE 218 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 218 (546)
++.+.|........+ +-.-+.+.|+.+.-.+...+++++|++.|..... . .+.+...|.-+.-.-++.|+++...+
T Consensus 55 g~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~-~-~~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALK-I-EKDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred cchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHh-c-CCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 445555555554442 3344556677777777777888888888877776 3 45566666555555555566655555
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCC--CCCHHHHHHH------HHHHHhcCCHHHHHHHHH
Q 009011 219 AFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCI--PLSSQIFNIL------IHGWCKTRKVDDAQKAMK 290 (546)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l------i~~~~~~g~~~~a~~~~~ 290 (546)
.-..+.+.. +.....|..+..+..-.|+...|..+.++..+.. +++...+.-. .....+.|..++|.+.+.
T Consensus 131 tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 131 TRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 554444321 2223344455555555566666666666555421 3444333222 223344555555555544
Q ss_pred HHHHCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCHHHHH-HHH--------
Q 009011 291 EMFQQGFSPDVVSY-TCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTI-VMHALGKAKQINEAL-KVY-------- 359 (546)
Q Consensus 291 ~m~~~g~~~~~~~~-~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~a~-~~~-------- 359 (546)
.-... ..|-..+ .+-...+.+.+++++|..++..+... .||..-|.. +..++.+.-+.-++. .+|
T Consensus 210 ~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~ 285 (700)
T KOG1156|consen 210 DNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYP 285 (700)
T ss_pred hhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCc
Confidence 43322 1122211 22233455556666666666666655 233333332 223332222222222 333
Q ss_pred --------------------------HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-------
Q 009011 360 --------------------------EKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKK----QGV------- 402 (546)
Q Consensus 360 --------------------------~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~------- 402 (546)
..+.+.|+++ ++..+...|-.-...+-..++...+.. .|.
T Consensus 286 r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~ 362 (700)
T KOG1156|consen 286 RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDG 362 (700)
T ss_pred ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccc
Confidence 3333444332 333333333222222212222222221 111
Q ss_pred ---CCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 009011 403 ---VPNVLTYN--TMISSACARSEEENALKLLQKMEEDLCKPDC-ETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDA 476 (546)
Q Consensus 403 ---~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 476 (546)
+|+...|+ .++..+-..|+++.|..+++..+.. .|+. ..|..=.+.+...|++++|..++++..+.+.. |.
T Consensus 363 ~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a-DR 439 (700)
T KOG1156|consen 363 KQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA-DR 439 (700)
T ss_pred ccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch-hH
Confidence 45555554 4677888999999999999999876 5553 45655667899999999999999999987643 66
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009011 477 GTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEK 520 (546)
Q Consensus 477 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 520 (546)
..-..-+.-..++++.++|.++.......|. +....-.-+++
T Consensus 440 ~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqc 481 (700)
T KOG1156|consen 440 AINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQC 481 (700)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhh
Confidence 6655777778899999999999999988875 44444344444
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.6e-06 Score=93.25 Aligned_cols=338 Identities=10% Similarity=0.050 Sum_probs=205.6
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCC-------CC--HHHHHHHHHH
Q 009011 205 RRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIP-------LS--SQIFNILIHG 275 (546)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~--~~~~~~li~~ 275 (546)
......|+++.+.++++.+.......+..........+...|+.+++...+........ +. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34455677777777776653211122222233344455677899998888876643211 11 1222334455
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CCHHHHHHHHHHH
Q 009011 276 WCKTRKVDDAQKAMKEMFQQGFSPDV----VSYTCFIEHYCREKDFRKVDDTLKEMQEK----GCK-PSVITYTIVMHAL 346 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~-p~~~~~~~li~~~ 346 (546)
+...|++++|...+++....-...+. ...+.+...+...|++++|...+++.... |.. ....++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 66789999999999987763111121 24455566677889999999998887643 111 1123445566677
Q ss_pred HhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHH
Q 009011 347 GKAKQINEALKVYEKMKSD----DCL--P-DTSFYSSLIFILSKAGRVKDANEIFEDMKKQ--GVVP--NVLTYNTMISS 415 (546)
Q Consensus 347 ~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p--~~~~~~~li~~ 415 (546)
...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999988876542 211 1 2233445556677789999999988877542 1112 23334445667
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 009011 416 ACARSEEENALKLLQKMEEDL--CKPDCE--TY--APLLKMCCRKKRMKVLNFLLTHMFKNDVSMD---AGTYASLVRGL 486 (546)
Q Consensus 416 ~~~~g~~~~A~~~~~~m~~~~--~~p~~~--~~--~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~ 486 (546)
+...|+.++|.+.++...... ...... .. ...+..+...|+.+.|..++........... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 778899999999888875421 111110 00 1122344557888998888777554221111 11234566778
Q ss_pred HHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 487 IESGKLELACSFFEEMISK----GIVPY-HSTYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
...|++++|...+++.... |..++ ..+...+..++...|+.++|.+.+....+...
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 8889999999999887653 33222 23455566778889999999888887765543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.7e-06 Score=76.25 Aligned_cols=382 Identities=12% Similarity=0.069 Sum_probs=213.6
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVE 218 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 218 (546)
.+...|..+..+.... +-.-...+---+...+-+.|++++|...+..+.. . ..++...+-.+.-.+.-.|.+.+|..
T Consensus 36 rDytGAislLefk~~~-~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-~-~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNL-DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN-K-DDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred ccchhHHHHHHHhhcc-chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc-c-CCCCcccchhHHHHHHHHHHHHHHHH
Confidence 4666777777766522 1111122222356677788999999999988877 3 45556666666666667788888887
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 219 AFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFS 298 (546)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 298 (546)
+-.+. +.++..-..++....+.|+-++-..+...+.+ ...---+|.......-.+++|.+++++....+
T Consensus 113 ~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn-- 181 (557)
T KOG3785|consen 113 IAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN-- 181 (557)
T ss_pred HHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 76654 33344444555556677777777777666654 22334455555555567899999999988753
Q ss_pred CCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--------------H
Q 009011 299 PDVVSYTCF-IEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKM--------------K 363 (546)
Q Consensus 299 ~~~~~~~~l-i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~--------------~ 363 (546)
|+-...|.- .-+|.+..-++-+.++++...+. ++.+....+.......+.=+-..|.+-.+++ .
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 444445543 34677888888888888877765 2323344443333222211111111111111 1
Q ss_pred hCCC------C------CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH----------------
Q 009011 364 SDDC------L------PD-----TSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYN---------------- 410 (546)
Q Consensus 364 ~~~~------~------~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~---------------- 410 (546)
+.+. + |. +..--.++-.|.+.+++.+|..+.+++.-. .|-.....
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHH
Confidence 1110 0 00 111122344566778888887776655310 11111111
Q ss_pred -------------------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009011 411 -------------------------TMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLT 465 (546)
Q Consensus 411 -------------------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 465 (546)
++...+.-..++++.+.++..+...=..-|...| .+.++.+..|...+|.++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHh
Confidence 1111122222333333333333322111222222 35567777888888888887
Q ss_pred HHHhCCCCCCHHHHH-HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 466 HMFKNDVSMDAGTYA-SLVRGLIESGKLELACSFFEEMISKGIVPYHS-TYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 466 ~m~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
.+....++ |..+|. .+.++|.+.|+++-|+.++-.+- -..+.. ....+.+-|.+.+.+=-|.+.|.++...++
T Consensus 418 ~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 418 RISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 77665555 455554 45577788888888877765553 222333 334445667788888888888888776554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.2e-06 Score=75.89 Aligned_cols=398 Identities=11% Similarity=0.042 Sum_probs=234.5
Q ss_pred CCCCCCHHHHHHHHHhhcC--ChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHH
Q 009011 121 CGVSVSNSLVEQTLRRFSN--DLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLA 198 (546)
Q Consensus 121 ~~~~~~~~~~~~~l~~~~~--~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~ 198 (546)
.|+.+.+..+..++.++-. ....+.+...... ...+.+....+.|...|-...++..|-+-++++.. ..|...
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~--Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~ 78 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSEL--ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELE 78 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHH--hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHH
Confidence 4555555556666665433 3334444444333 22334777888899999999999999999999987 333333
Q ss_pred HHH-HHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH--HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 199 TMS-TIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDT--LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 199 ~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
-|. --.+.+.+.+.+.+|+.+...|.+. ++...-..-+.+ .-..+++..+..++++.... .+..+.+.....
T Consensus 79 qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~Ad~~in~gCl 153 (459)
T KOG4340|consen 79 QYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NEADGQINLGCL 153 (459)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--Cccchhccchhe
Confidence 322 2366778899999999999888542 332222222222 33568888888888877642 244455566666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-------------CHH-----
Q 009011 276 WCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKP-------------SVI----- 337 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-------------~~~----- 337 (546)
..+.|+.++|.+-|....+-|---....|+..+..| +.|+++.|+++..+++++|++- |+.
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt 232 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT 232 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch
Confidence 778999999999999988764333677888766544 6689999999999999987532 211
Q ss_pred ---HHHHHHH-------HHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009011 338 ---TYTIVMH-------ALGKAKQINEALKVYEKMKSDD-CLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNV 406 (546)
Q Consensus 338 ---~~~~li~-------~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 406 (546)
.-..++. .+.+.|+++.|.+.+-.|.-.. ...|+.|...+.-. --.+++.+..+-+.-+.+.... -.
T Consensus 233 ~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ 310 (459)
T KOG4340|consen 233 LVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PP 310 (459)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-Ch
Confidence 1122333 3456788888888888876432 23466665544322 1234565666666666655443 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009011 407 LTYNTMISSACARSEEENALKLLQKMEEDLC-KPDCETYAPLLKMCC-RKKRMKVLNFLLTHMFKNDVSMDAGTYASLVR 484 (546)
Q Consensus 407 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 484 (546)
.||..++-.||++.-++.|-+++.+-...-. -.+...|+ ++.++. -.-..+++.+-++.+...- ....-..-+.
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l---~~kLRklAi~ 386 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML---TEKLRKLAIQ 386 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 6888888899999999999988865321110 11222333 333333 3445666666665544310 0011111111
Q ss_pred HH-HHcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 009011 485 GL-IESGKLEL----ACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAH 539 (546)
Q Consensus 485 ~~-~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 539 (546)
.- .+..+-+. |++-+++..+. -..+..+-...+....++..++++|..-..
T Consensus 387 vQe~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 387 VQEARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 11 12222222 22223333222 111222333445677888889888876543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.2e-05 Score=77.49 Aligned_cols=381 Identities=11% Similarity=0.045 Sum_probs=254.8
Q ss_pred cCCCCCCHHHHHHHHHh--hcCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCH
Q 009011 120 GCGVSVSNSLVEQTLRR--FSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSL 197 (546)
Q Consensus 120 ~~~~~~~~~~~~~~l~~--~~~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~ 197 (546)
...+..++.++..+-=. +++....+-+.|.... ++..-..+.|+.+-..|..+|.-..|..++++-....+.+.+.
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~--~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQAL--PFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 33455556555544332 2344555555666554 5566677889999999999999999999999877644234455
Q ss_pred HHHHHHHHHHHh-cCChHHHHHHHHHhhhC--CC--CCCHHHHHHHHHHHHcc----C-------CHHHHHHHHHHhhcC
Q 009011 198 ATMSTIMRRLVR-GGRYDDAVEAFRGMKKY--GV--EKDTRALSVLMDTLVKG----N-------SVEHAYKVFLEFKDC 261 (546)
Q Consensus 198 ~~~~~li~~~~~-~g~~~~A~~~~~~m~~~--~~--~~~~~~~~~ll~~~~~~----g-------~~~~a~~~~~~~~~~ 261 (546)
..+-..-..|.+ .+..++++++-.+.... +. ......|..+.-+|... . ...++.+.+++..+.
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 555444455544 46777787777776551 11 23344555555554422 1 123566677777666
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCC-------
Q 009011 262 IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEK-GCK------- 333 (546)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~------- 333 (546)
.+.|+.+...+.--|+..++++.|.+...+..+.+..-+...|..+.-.+...+++.+|+.+.+..... |..
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 666777777777788999999999999999999876779999999999999999999999999876643 210
Q ss_pred -----------CCHHHHHHHHHHHHh------cC-----------------CHHHHHHHHHHH--------HhCC-----
Q 009011 334 -----------PSVITYTIVMHALGK------AK-----------------QINEALKVYEKM--------KSDD----- 366 (546)
Q Consensus 334 -----------p~~~~~~~li~~~~~------~g-----------------~~~~a~~~~~~~--------~~~~----- 366 (546)
--..|+..++...-. .+ +..++.+...++ ...|
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 011122222222110 00 111111111111 0001
Q ss_pred ----CC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 367 ----CL--PD------TSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEE 434 (546)
Q Consensus 367 ----~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 434 (546)
.. |+ ...|......+.+.+..++|...+.+..+.. ......|......+...|..++|.+.|.....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 00 11 1234455666777888888888877776532 23455666666677888999999999998877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 435 DLCKPDCETYAPLLKMCCRKKRMKVLNF--LLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 435 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~--~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
.+ +-++.....+...+.+.|+...|.. ++.++.+.++. +...|-.+...+-+.|+.++|.+.|+...+.
T Consensus 713 ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 713 LD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred cC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 53 3345678889999999999888877 99999998877 8999999999999999999999999988764
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.4e-08 Score=88.79 Aligned_cols=252 Identities=16% Similarity=0.141 Sum_probs=128.5
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 204 MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVD 283 (546)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 283 (546)
++-+.-.|++..++.-.+ .....-..+......+.+++...|+.+. +..++....+|.......+...+...++-+
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~---vl~ei~~~~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDS---VLSEIKKSSSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHH---HHHHS-TTSSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhH---HHHHhccCCChhHHHHHHHHHHHhCccchH
Confidence 334445677777765554 2222112233344555666677776553 334444333455555544444443333444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 284 DAQKAMKEMFQQGFSPDVVSYTC-FIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKM 362 (546)
Q Consensus 284 ~a~~~~~~m~~~g~~~~~~~~~~-li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 362 (546)
.+..-+++....+...+..++.. ....+...|++++|++++... .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444433332222212222222 223445567777777666532 24555666667777777777777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 363 KSDDCLPDTSFYSSLIFILS----KAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCK 438 (546)
Q Consensus 363 ~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 438 (546)
.+.+ .|.. ...+..++. -.+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++++..+.+ +
T Consensus 158 ~~~~--eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQID--EDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCCS--CCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred HhcC--CcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 6643 2322 222333222 233577777777776553 34566677777777777777777777777765543 3
Q ss_pred CCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhC
Q 009011 439 PDCETYAPLLKMCCRKKRM-KVLNFLLTHMFKN 470 (546)
Q Consensus 439 p~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~ 470 (546)
-+..+...++.+....|+. +.+.+++.++...
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 3455555666655666665 5566666666553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.5e-05 Score=75.14 Aligned_cols=365 Identities=13% Similarity=0.081 Sum_probs=214.7
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVE 218 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 218 (546)
++.+.|...|..+..- -++|-..|..-..+|++.|++++|.+=-.+-.+ - .|.-...|+....++.-.|++++|+.
T Consensus 16 ~d~~~ai~~~t~ai~l--~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~-l-~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIML--SPTNHVLYSNRSAAYASLGSYEKALKDATKTRR-L-NPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccHHHHHHHHHHHHcc--CCCccchhcchHHHHHHHhhHHHHHHHHHHHHh-c-CCchhhHHHHhHHHHHhcccHHHHHH
Confidence 3666677777666421 123556677778888888888877766555555 2 44445677777777777788888888
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH------HHhhcCCC-----CCHHHHHHHHHHHHhc--------
Q 009011 219 AFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVF------LEFKDCIP-----LSSQIFNILIHGWCKT-------- 279 (546)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~------~~~~~~~~-----~~~~~~~~li~~~~~~-------- 279 (546)
.|.+-.+.. +-+...++.+..++.... .+.+.| ..+. +.| .....|..++..+-+.
T Consensus 92 ay~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~-~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 92 AYSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLA-NLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHhhcC-CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhh-cChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 887766542 344555566666651110 001111 1110 000 0111122222222111
Q ss_pred --CCHHHHHHHHHHH-----HHCC-------CCC------------C----------HHHHHHHHHHHHhcCChhHHHHH
Q 009011 280 --RKVDDAQKAMKEM-----FQQG-------FSP------------D----------VVSYTCFIEHYCREKDFRKVDDT 323 (546)
Q Consensus 280 --g~~~~a~~~~~~m-----~~~g-------~~~------------~----------~~~~~~li~~~~~~g~~~~a~~l 323 (546)
..+..+..++... ...| ..| | ..-...+.++..+..+++.+.+-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 1122222221110 0000 111 0 11234455666677788888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHH
Q 009011 324 LKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSL-------IFILSKAGRVKDANEIFED 396 (546)
Q Consensus 324 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~ 396 (546)
+....+.. -+..-++....+|...|.+.++...-+...+.|.. ...-|+.+ ..+|.+.++++.|...|.+
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 88877764 35555666777888888888887777776666533 22333333 3355566778888888877
Q ss_pred HHHCCCCCCHHHH-------------------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009011 397 MKKQGVVPNVLTY-------------------------NTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMC 451 (546)
Q Consensus 397 ~~~~~~~p~~~~~-------------------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 451 (546)
.......|+...= ..-...+.+.|++..|++.|.++++.. +-|...|+.-.-+|
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACY 402 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence 6654434433221 111234677889999999999988876 56778888888889
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009011 452 CRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEE 519 (546)
Q Consensus 452 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 519 (546)
.+.|.+..|..-.+...+.++. ....|.--..++....++++|.+.|++..+.. |+..-+.--+.
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~ 467 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYR 467 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 9999998888888877776443 44455555566666778888888888888664 55544433333
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.86 E-value=0.00012 Score=75.47 Aligned_cols=296 Identities=15% Similarity=0.194 Sum_probs=161.9
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCC-CCCCHHHHHHHHHH---------------------------HHhc
Q 009011 159 HTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNN-GYVSLATMSTIMRR---------------------------LVRG 210 (546)
Q Consensus 159 ~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~-~~~~~~~~~~li~~---------------------------~~~~ 210 (546)
.|++.-+.-+.++...+-..+-+++++++.-..+ ...+...-|.++-. ...+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~ 1061 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIEN 1061 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhh
Confidence 4445555556666666666666666665543220 11122223333322 2333
Q ss_pred CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 211 GRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMK 290 (546)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (546)
+-+++|..+|++. ..+..+.+.|+. .-+.++.|.+.-++.. .+.+|..+..+-.+.|.+.+|.+-|-
T Consensus 1062 ~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n-----~p~vWsqlakAQL~~~~v~dAieSyi 1128 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCN-----EPAVWSQLAKAQLQGGLVKDAIESYI 1128 (1666)
T ss_pred hHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhC-----ChHHHHHHHHHHHhcCchHHHHHHHH
Confidence 4444555555443 223333333332 2344455554444332 34567777777777777777765553
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 009011 291 EMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPD 370 (546)
Q Consensus 291 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 370 (546)
+. -|...|..+++...+.|.+++..+++....+..-.|... +.+|-+|++.+++.+.++.+. -|+
T Consensus 1129 ka------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN 1193 (1666)
T KOG0985|consen 1129 KA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPN 1193 (1666)
T ss_pred hc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCC
Confidence 33 256667777777777777777777776666665555544 356777777777666554431 255
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009011 371 TSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKM 450 (546)
Q Consensus 371 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 450 (546)
..-...+.+-|...|.++.|.-+|.. +..|..+...+...|++..|.+.-++. .+..||..+-.+
T Consensus 1194 ~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~Vcfa 1258 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFA 1258 (1666)
T ss_pred chhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHH
Confidence 55556666666666667666665543 334566666666667777766655442 244566666666
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009011 451 CCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEM 502 (546)
Q Consensus 451 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 502 (546)
|...+.+.-| +|...++.....-..-++.-|-..|.+++.+.+++..
T Consensus 1259 Cvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1259 CVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 6655544332 2222333334444555555666666666655555543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.6e-05 Score=70.95 Aligned_cols=292 Identities=13% Similarity=0.141 Sum_probs=178.1
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc--CCHHHHH
Q 009011 210 GGRYDDAVEAFRGMKKYGVEKDTRALSVLMD-TLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKT--RKVDDAQ 286 (546)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~ 286 (546)
.-.+++|++++.+.... .|.-...|.-+. +|.+..-.+-+.+++....+.+|.+....|..+....+. |+..+
T Consensus 164 R~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae-- 239 (557)
T KOG3785|consen 164 RMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAE-- 239 (557)
T ss_pred HHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhH--
Confidence 34678999999998764 455555555443 566788888888888888888888888777766555443 33222
Q ss_pred HHHHHHH--------------HCC------------CCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 009011 287 KAMKEMF--------------QQG------------FSPD-----VVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPS 335 (546)
Q Consensus 287 ~~~~~m~--------------~~g------------~~~~-----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 335 (546)
+-.+++. +.+ +-|. +..--.|+-.|.+.++.++|..+.+++.-. .|-
T Consensus 240 ~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~ 317 (557)
T KOG3785|consen 240 DEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPY 317 (557)
T ss_pred HHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChH
Confidence 2122221 111 0011 122234555678889999998887765421 222
Q ss_pred HHHHHHHHH-----HHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 009011 336 VITYTIVMH-----ALGKAKQINEALKVYEKMKSDDCLPDT-SFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTY 409 (546)
Q Consensus 336 ~~~~~~li~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 409 (546)
......+.. -......+.-|.+.|.-.-+.+...|+ .--.++..++.-..++++.+-.++.+..--..-|...+
T Consensus 318 EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~ 397 (557)
T KOG3785|consen 318 EYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL 397 (557)
T ss_pred HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence 222222221 112222455677777666655544332 22344555666667788888888888765555455555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHH
Q 009011 410 NTMISSACARSEEENALKLLQKMEEDLCKPDCETY-APLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTY-ASLVRGLI 487 (546)
Q Consensus 410 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~ 487 (546)
| +.++++..|.+.+|+++|-.+....++ |..+| ..|.++|.+.+.++.|+.++-.+.. ..+..+. ..+..-|.
T Consensus 398 N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CY 472 (557)
T KOG3785|consen 398 N-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCY 472 (557)
T ss_pred H-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHH
Confidence 4 678889999999999999877655444 34455 4566788899999988777655433 2233333 34456678
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHH
Q 009011 488 ESGKLELACSFFEEMISKGIVPYHSTY 514 (546)
Q Consensus 488 ~~g~~~~A~~~~~~m~~~g~~p~~~~~ 514 (546)
+.+.+--|.+.|+++.... |++..|
T Consensus 473 k~~eFyyaaKAFd~lE~lD--P~pEnW 497 (557)
T KOG3785|consen 473 KANEFYYAAKAFDELEILD--PTPENW 497 (557)
T ss_pred HHHHHHHHHHhhhHHHccC--CCcccc
Confidence 8888888888888876443 544433
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-07 Score=86.70 Aligned_cols=248 Identities=15% Similarity=0.128 Sum_probs=148.6
Q ss_pred HHccCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 009011 242 LVKGNSVEHAYKVFLEFKD-CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKV 320 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 320 (546)
+--.|++..+..-.+ ... ..+.+......+.+++...|+.+.+. .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 444677777765444 222 11223344566778888888766543 3443332 55655555444444333444455
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 321 DDTLKEMQEKGCKP-SVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKK 399 (546)
Q Consensus 321 ~~l~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 399 (546)
..-+++.......+ +..........+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 54444443333332 2233333334566678888888877642 3566677778888888888888888888876
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 009011 400 QGVVPNVLTYNTMISSACA----RSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMD 475 (546)
Q Consensus 400 ~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 475 (546)
.+ .| .+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|..++.+..+.+.. +
T Consensus 160 ~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~ 234 (290)
T PF04733_consen 160 ID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-D 234 (290)
T ss_dssp CS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-H
T ss_pred cC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-C
Confidence 42 33 344445554432 23578888888887654 4677788888888888888888888888888776654 6
Q ss_pred HHHHHHHHHHHHHcCCh-HHHHHHHHHHHHC
Q 009011 476 AGTYASLVRGLIESGKL-ELACSFFEEMISK 505 (546)
Q Consensus 476 ~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 505 (546)
..+...++.+....|+. +.+.+++.++...
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 66776777777777777 6677788877754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.2e-05 Score=85.75 Aligned_cols=335 Identities=11% Similarity=-0.001 Sum_probs=209.9
Q ss_pred HHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC------CCCH--HHHHHHHHHH
Q 009011 171 LGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGV------EKDT--RALSVLMDTL 242 (546)
Q Consensus 171 ~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------~~~~--~~~~~ll~~~ 242 (546)
+...|+++.+..+++.+.... ...+..........+...|++++|..+++...+.-- .+.. .....+...+
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEV-LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHH-HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 334566666666665543211 111122223344555678999999999987754210 1111 1222233445
Q ss_pred HccCCHHHHHHHHHHhhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHH
Q 009011 243 VKGNSVEHAYKVFLEFKDCIPLS-----SQIFNILIHGWCKTRKVDDAQKAMKEMFQQ----GFS-PDVVSYTCFIEHYC 312 (546)
Q Consensus 243 ~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~ 312 (546)
...|++++|...++......+.. ....+.+...+...|++++|...+++.... |.. ....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 67899999999998865432222 134566777788899999999999887653 111 11234556667788
Q ss_pred hcCChhHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHH
Q 009011 313 REKDFRKVDDTLKEMQEK----GCK--P-SVITYTIVMHALGKAKQINEALKVYEKMKSDD--CLP--DTSFYSSLIFIL 381 (546)
Q Consensus 313 ~~g~~~~a~~l~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~ 381 (546)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998886642 221 1 22334455566777899999999998875431 112 233445566678
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC-CCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHH
Q 009011 382 SKAGRVKDANEIFEDMKKQGVV-PNVLTY-----NTMISSACARSEEENALKLLQKMEEDLCKPDC---ETYAPLLKMCC 452 (546)
Q Consensus 382 ~~~g~~~~A~~~~~~~~~~~~~-p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~ 452 (546)
...|++++|.+.+++....... .....+ ...+..+...|+.+.|..++............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 8899999999999887542111 111111 11224445678999999998776542211111 11345666788
Q ss_pred hcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009011 453 RKKRMKVLNFLLTHMFKN----DVSM-DAGTYASLVRGLIESGKLELACSFFEEMISKG 506 (546)
Q Consensus 453 ~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 506 (546)
..|+.++|...+++.... +... ...++..+..++.+.|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999987762 2222 22456667778889999999999999988763
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.6e-05 Score=67.74 Aligned_cols=317 Identities=10% Similarity=0.016 Sum_probs=178.0
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHH-HHH
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRAL-SVL 238 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~l 238 (546)
+..-.--+...+...|++..|+.-|....+ + ++.+-.++..-...|...|+...|+.=|.+..+. +||-..- ..-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve-~-dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVE-G-DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc-C-CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 334444566677777777777777777766 4 5555555555566677777777777777776653 5664332 222
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009011 239 MDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFR 318 (546)
Q Consensus 239 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 318 (546)
...+.+.|.++.|..-|+.+....|.+... ..++.+.-..++-+. ....+..+.-.|+..
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~----~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLV----LEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQ 172 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchh----HHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchh
Confidence 344667777777777777766543322110 011111111111111 112233444566677
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 319 KVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMK 398 (546)
Q Consensus 319 ~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 398 (546)
.|+..+..+.+- .+-|...|..-..+|...|++..|+.-++...+.. ..++.++.-+-..+...|+.+.++...++..
T Consensus 173 ~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 173 NAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 777766666665 23355566666666777777777666655555443 2344455555566666677777766666666
Q ss_pred HCCCCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHHHH
Q 009011 399 KQGVVPNVLT----YNTM---------ISSACARSEEENALKLLQKMEEDLCKPDCE---TYAPLLKMCCRKKRMKVLNF 462 (546)
Q Consensus 399 ~~~~~p~~~~----~~~l---------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~g~~~~a~~ 462 (546)
+. .||... |-.+ +......+++.++++-.+...+........ .+..+-.++...|++.+|++
T Consensus 251 Kl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 251 KL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred cc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 53 344322 1111 112344566666666666666553221122 23334445556667777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 463 LLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 463 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
...+..+.... |+.++.--..+|.-...+++|+.-|+...+.
T Consensus 329 qC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 329 QCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 77777664433 4677777777777777777777777776654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.5e-05 Score=76.12 Aligned_cols=330 Identities=10% Similarity=0.104 Sum_probs=151.5
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC--CCCCHHHH
Q 009011 159 HTPEMYNTMVDVLGKSKKFCLMWELVKEMDELN-NGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYG--VEKDTRAL 235 (546)
Q Consensus 159 ~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~ 235 (546)
.|...|+.++.- .. .--+++.++..+.. +...++...+..+.++...+-+.+-+++++++.-.+ +..+...-
T Consensus 950 ~D~~LW~~VL~e---~n--~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQ 1024 (1666)
T KOG0985|consen 950 SDPDLWAKVLNE---EN--PYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQ 1024 (1666)
T ss_pred cChHHHHHHHhc---cC--hHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhh
Confidence 455666655521 11 11234455544422 134567777788999999999999999999986322 12222223
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------------------
Q 009011 236 SVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGF------------------ 297 (546)
Q Consensus 236 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~------------------ 297 (546)
+.|+-...+. +.....+..+++..-..++ +.......+-+++|..+|++..-.+-
T Consensus 1025 nLLiLtAika-d~trVm~YI~rLdnyDa~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~ef 1097 (1666)
T KOG0985|consen 1025 NLLILTAIKA-DRTRVMEYINRLDNYDAPD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEF 1097 (1666)
T ss_pred hhHHHHHhhc-ChHHHHHHHHHhccCCchh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHH
Confidence 3444333333 3333444444443311122 23334445555666666555431000
Q ss_pred ---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 009011 298 ---SPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFY 374 (546)
Q Consensus 298 ---~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 374 (546)
--....|..+..+-.+.|...+|.+-|-+. -|+..|..+++.+.+.|.+++-.+++....+..-+|...
T Consensus 1098 Ae~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id-- 1169 (1666)
T KOG0985|consen 1098 AERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID-- 1169 (1666)
T ss_pred HHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--
Confidence 002233444444444444444444333221 133445555555555555555555444444433233222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009011 375 SSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRK 454 (546)
Q Consensus 375 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 454 (546)
+.||-+|++.+++.+.++++. .|+......+..-|...|.++.|.-+|.. ...|..|...+...
T Consensus 1170 ~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~L 1233 (1666)
T KOG0985|consen 1170 SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYL 1233 (1666)
T ss_pred HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHH
Confidence 344455555555444333321 14444444444444445555544444432 22344555555555
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHH
Q 009011 455 KRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERIN 534 (546)
Q Consensus 455 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 534 (546)
|++..|...-++. .+..+|..+-.+|...+.+.-| +|....+.....-...+++.|...|-+++...++
T Consensus 1234 geyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~ 1302 (1666)
T KOG0985|consen 1234 GEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLL 1302 (1666)
T ss_pred HHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHH
Confidence 5555554433322 1445555555555544443322 1221122223333444555555555555544444
Q ss_pred H
Q 009011 535 K 535 (546)
Q Consensus 535 ~ 535 (546)
+
T Consensus 1303 E 1303 (1666)
T KOG0985|consen 1303 E 1303 (1666)
T ss_pred H
Confidence 3
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.8e-06 Score=82.39 Aligned_cols=331 Identities=12% Similarity=0.105 Sum_probs=200.4
Q ss_pred CCHHHHHHHHH--HHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC-C-------C
Q 009011 159 HTPEMYNTMVD--VLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY-G-------V 228 (546)
Q Consensus 159 ~~~~~~~~ll~--~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-------~ 228 (546)
.|..|-.++++ .|...|+.+.|.+-.+-++. ...|..+.+.+.+..+.+-|.-.+-.|... | .
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 56666666664 47778888888877776654 567888888888888777776555555321 1 1
Q ss_pred -CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009011 229 -EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCF 307 (546)
Q Consensus 229 -~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 307 (546)
.++ .+-..+.......|.+++|+.+|.+.+. |..|=+.|-..|.+++|.++-+.=...- =-.||...
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~y 864 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNY 864 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHH
Confidence 121 2222223334577888999988887764 5566677778888888887765432211 12355555
Q ss_pred HHHHHhcCChhHHHHHHHHH----------HHcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 009011 308 IEHYCREKDFRKVDDTLKEM----------QEKG---------CKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCL 368 (546)
Q Consensus 308 i~~~~~~g~~~~a~~l~~~m----------~~~g---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 368 (546)
...+-..+|.+.|++.|++. .... -..|...|......+-..|+++.|+.+|....+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 55666677777777777652 1110 122445555566666677888888888876654
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009011 369 PDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLL 448 (546)
Q Consensus 369 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 448 (546)
|-+++...|-.|+.++|-.+-++- -|......+.+.|-..|++.+|..+|.+.. +|...|
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAI 1000 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAI 1000 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHH
Confidence 345666677778888888776653 255566667888888888888888887654 233333
Q ss_pred HHHHhcCC---------------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH--------HHHHC
Q 009011 449 KMCCRKKR---------------MKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFE--------EMISK 505 (546)
Q Consensus 449 ~~~~~~g~---------------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~ 505 (546)
+.|-..+- .-.|..+|++. |. -...-+..|-+.|.+.+|+++-= +++.+
T Consensus 1001 RlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~ 1072 (1416)
T KOG3617|consen 1001 RLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAK 1072 (1416)
T ss_pred HHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHH
Confidence 33322221 22223333321 11 12233455667777776665421 12222
Q ss_pred --CCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHH
Q 009011 506 --GIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHA 540 (546)
Q Consensus 506 --g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 540 (546)
.-..|+...+...+.++...+++.|..++-..+++
T Consensus 1073 DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~ 1109 (1416)
T KOG3617|consen 1073 DLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF 1109 (1416)
T ss_pred hcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 22345666777777777777777777776655543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.1e-05 Score=85.45 Aligned_cols=235 Identities=11% Similarity=0.093 Sum_probs=185.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 009011 300 DVVSYTCFIEHYCREKDFRKVDDTLKEMQEK-GCKP---SVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYS 375 (546)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 375 (546)
+...|-..|......++.++|.++.++.... ++.- -...|.++++.-..-|.-+...++|+++.+.. ....+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4567888888888999999999999988764 1111 12356666666666778889999999998863 2356788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 009011 376 SLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPD---CETYAPLLKMCC 452 (546)
Q Consensus 376 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~ 452 (546)
.|...|.+.+.+++|.++++.|.++- .-....|...+..+.++++-+.|..++.+..+. -|. .......+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 99999999999999999999998753 257789999999999999999999999998875 343 344555666677
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcChhhHH
Q 009011 453 RKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHS--TYKMLEEKLEKKRLGNAK 530 (546)
Q Consensus 453 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~~~~a 530 (546)
+.|+.+++..+|+......++ -...|+.+|+.-.++|+.+.+..+|++.+..++.|... .|...+..=...|+.+.+
T Consensus 1612 k~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 899999999999999887655 57799999999999999999999999999999887653 455556555556777777
Q ss_pred HHHHHHHHHH
Q 009011 531 ERINKLLAHA 540 (546)
Q Consensus 531 ~~~~~~m~~~ 540 (546)
+.+-.+..++
T Consensus 1691 E~VKarA~EY 1700 (1710)
T KOG1070|consen 1691 EYVKARAKEY 1700 (1710)
T ss_pred HHHHHHHHHH
Confidence 6665555443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00022 Score=69.47 Aligned_cols=362 Identities=11% Similarity=0.098 Sum_probs=214.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH--
Q 009011 166 TMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLV-- 243 (546)
Q Consensus 166 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~-- 243 (546)
+=++.+...|++++|.+....+.. . .+.+...+..-+-++.+.+++++|+.+.+.-.. ...+...+ +=.+||
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~-~-~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~--fEKAYc~Y 90 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILS-I-VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFF--FEKAYCEY 90 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHh-c-CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhh--HHHHHHHH
Confidence 446788889999999999999998 4 577788888888899999999999966554321 11111111 345555
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------------------------
Q 009011 244 KGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSP------------------------ 299 (546)
Q Consensus 244 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~------------------------ 299 (546)
+.+..++|...++.. .+.+..+...-.+.+.+.|++++|.++|..+.+.+.+-
T Consensus 91 rlnk~Dealk~~~~~---~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGL---DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred HcccHHHHHHHHhcc---cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 678999999888732 34455567777888999999999999999998765321
Q ss_pred ---CHHHHHHHH---HHHHhcCChhHHHHHHHHHHHcC-------CCCCHH-------HHHHHHHHHHhcCCHHHHHHHH
Q 009011 300 ---DVVSYTCFI---EHYCREKDFRKVDDTLKEMQEKG-------CKPSVI-------TYTIVMHALGKAKQINEALKVY 359 (546)
Q Consensus 300 ---~~~~~~~li---~~~~~~g~~~~a~~l~~~m~~~g-------~~p~~~-------~~~~li~~~~~~g~~~~a~~~~ 359 (546)
...+|..+. ..+...|++.+|+++++...+.+ -.-+.. .-.-+..++-..|+.++|..+|
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 011233222 34556788888888888773221 111111 1112334556778888888888
Q ss_pred HHHHhCCCCCCHHHH----HHHHHHHHhcC---------------------------------------------CHHHH
Q 009011 360 EKMKSDDCLPDTSFY----SSLIFILSKAG---------------------------------------------RVKDA 390 (546)
Q Consensus 360 ~~~~~~~~~~~~~~~----~~li~~~~~~g---------------------------------------------~~~~A 390 (546)
..+.+.+. +|.... |.|+.+-.... ..+.+
T Consensus 248 ~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~ 326 (652)
T KOG2376|consen 248 VDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQV 326 (652)
T ss_pred HHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 88887753 333221 11111100000 00000
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH---
Q 009011 391 NEIFEDMKKQGVVPNVLTYNTMISSA--CARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLT--- 465 (546)
Q Consensus 391 ~~~~~~~~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~--- 465 (546)
.++-.... +..|.. .+..++..+ ++...+.++.+++...-+..-.-.....-..+......|+++.|.+++.
T Consensus 327 r~~~a~lp--~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~ 403 (652)
T KOG2376|consen 327 RELSASLP--GMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFL 403 (652)
T ss_pred HHHHHhCC--ccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 00000000 112222 223333322 2223466677777666554211123444555666778999999999998
Q ss_pred -----HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcChhhHHHHHH
Q 009011 466 -----HMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISK--GIVPY----HSTYKMLEEKLEKKRLGNAKERIN 534 (546)
Q Consensus 466 -----~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~ 534 (546)
.+.+.+..| .+...++..+.+.++.+.|..++.+.+.. .-.+. ..++..+...-.+.|..++|..++
T Consensus 404 ~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~l 481 (652)
T KOG2376|consen 404 ESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLL 481 (652)
T ss_pred hhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence 555544443 45566777778888877777777776532 11111 223444444446679999999999
Q ss_pred HHHHHHhh
Q 009011 535 KLLAHAKE 542 (546)
Q Consensus 535 ~~m~~~~~ 542 (546)
+++.+...
T Consensus 482 eel~k~n~ 489 (652)
T KOG2376|consen 482 EELVKFNP 489 (652)
T ss_pred HHHHHhCC
Confidence 98877543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-05 Score=75.25 Aligned_cols=141 Identities=4% Similarity=-0.079 Sum_probs=69.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGG-RYDDAVEAFRGMKKYGVEKDTRALSVLMDT 241 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 241 (546)
+++.+-.++...++.++|+.+.+++.+ . .+.+..+|+..-..+...| .++++++.++++.+.. +.+..+|+...-+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~-l-nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIR-L-NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH-H-CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 445555555566666666666666665 2 4444555554444444444 3456666666555433 3333344433333
Q ss_pred HHccCC--HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009011 242 LVKGNS--VEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCF 307 (546)
Q Consensus 242 ~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 307 (546)
+.+.|. .+++..+++++.+..+.+..+|+...-.+...|+++++++.++++++.++. +...|+..
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R 182 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQR 182 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHH
Confidence 333333 134444444444444455555555555555555555555555555544333 33444433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.2e-05 Score=74.11 Aligned_cols=220 Identities=8% Similarity=0.030 Sum_probs=145.4
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH--HHH
Q 009011 209 RGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGN-SVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKV--DDA 285 (546)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~a 285 (546)
..++.++|+.++.++.+.. +-+..+|+....++...| +++++...++++....|.+..+|+.....+.+.|+. +++
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence 3467778888888877643 334445555555556666 567888888887777777777777666666666653 567
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CC----HHHHHHH
Q 009011 286 QKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKA---KQ----INEALKV 358 (546)
Q Consensus 286 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~---g~----~~~a~~~ 358 (546)
..+++++.+...+ +..+|+...-.+...|+++++++.++++++.+.. |...|+.....+.+. |. .++..+.
T Consensus 128 l~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 7777777776554 6777877777777788888888888888877654 555565555554443 22 2456666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------------
Q 009011 359 YEKMKSDDCLPDTSFYSSLIFILSKA----GRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARS-------------- 420 (546)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-------------- 420 (546)
..+++... +-|...|+.+...+... ++..+|.+.+.+..+.++ .+......|+..|+...
T Consensus 206 ~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~ 283 (320)
T PLN02789 206 TIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCEGLQPTAEFRDTVDTLA 283 (320)
T ss_pred HHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHhhhccchhhhhhhhccc
Confidence 66666654 34667777777666662 344567777777665442 35666777777776532
Q ss_pred ----CHHHHHHHHHHHH
Q 009011 421 ----EEENALKLLQKME 433 (546)
Q Consensus 421 ----~~~~A~~~~~~m~ 433 (546)
..++|.++++.+.
T Consensus 284 ~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 284 EELSDSTLAQAVCSELE 300 (320)
T ss_pred cccccHHHHHHHHHHHH
Confidence 3467888888884
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.3e-05 Score=74.29 Aligned_cols=364 Identities=16% Similarity=0.121 Sum_probs=239.1
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHccC
Q 009011 168 VDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKD-TRALSVLMDTLVKGN 246 (546)
Q Consensus 168 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g 246 (546)
-......|+++.|+..|-+... - .+.+...|..-..+|+..|++++|++=-.+-++. .|+ ...|+....++.-.|
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~-l-~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIM-L-SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHc-c-CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcc
Confidence 3456778999999999999888 4 5668999999999999999999998877777654 555 568999999999999
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH---HHHHHHHHHC---CCCCCHHHHHHHHHHHHhc------
Q 009011 247 SVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDA---QKAMKEMFQQ---GFSPDVVSYTCFIEHYCRE------ 314 (546)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a---~~~~~~m~~~---g~~~~~~~~~~li~~~~~~------ 314 (546)
++++|...|.+-.+..|.+...++-+..++.......+. -.++..+... ........|..++..+-+.
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999999998888888999999998888221100000 0011111110 0001122333333332221
Q ss_pred ----CChhHHHHHHHH-----HHHcC-------CCC----------------------CHHHHHHHHHHHHhcCCHHHHH
Q 009011 315 ----KDFRKVDDTLKE-----MQEKG-------CKP----------------------SVITYTIVMHALGKAKQINEAL 356 (546)
Q Consensus 315 ----g~~~~a~~l~~~-----m~~~g-------~~p----------------------~~~~~~~li~~~~~~g~~~~a~ 356 (546)
..+..+.-.+.. +...| ..| -..-...+..+..+..+++.+.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 111111111110 00011 111 0112345666777788889999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHH
Q 009011 357 KVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTM-------ISSACARSEEENALKLL 429 (546)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-------i~~~~~~g~~~~A~~~~ 429 (546)
+-+....+.. .+..-++....+|...|.+.++...-+...+.|-. ...-|+.+ ..+|.+.++.+.|...|
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 9999888875 46667777888899999888888777776665532 22233333 33566678889999998
Q ss_pred HHHHHCCCCCCHHHH-------------------------HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009011 430 QKMEEDLCKPDCETY-------------------------APLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVR 484 (546)
Q Consensus 430 ~~m~~~~~~p~~~~~-------------------------~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 484 (546)
++.......|+..+= ..-...+.+.|++..|...+.++++.++. |...|....-
T Consensus 322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAa 400 (539)
T KOG0548|consen 322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAA 400 (539)
T ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHH
Confidence 887655444443221 11133566789999999999999998866 8999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcChhhHHHHHHHHHHHHh
Q 009011 485 GLIESGKLELACSFFEEMISKGIVPYH-STYKMLEEKLEKKRLGNAKERINKLLAHAK 541 (546)
Q Consensus 485 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 541 (546)
+|.+.|.+..|++-.+..++.. |+. .-|..=..++....+++.|.+.+.+-.+..
T Consensus 401 c~~kL~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 401 CYLKLGEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999888887663 443 233333444445566667766666655443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.6e-05 Score=84.30 Aligned_cols=234 Identities=12% Similarity=0.063 Sum_probs=164.3
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HH
Q 009011 229 EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPL-----SSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPD-VV 302 (546)
Q Consensus 229 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~ 302 (546)
+.....|...|......++.++|.+++++....+.+ -..+|-++++.-..-|.-+...++|++..+. .| ..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence 445566777777777888888888888877664322 2345777777777778778888888888775 23 34
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHH
Q 009011 303 SYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCL-PDTSFYSSLIFIL 381 (546)
Q Consensus 303 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~ 381 (546)
.|..|...|.+.+.+++|.++++.|.+.- .-....|...+..+.+.++-+.|..++.+..+.-.. -......-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 57778888888888888888888888762 235567888888888888888888888887764211 1344555566666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHH
Q 009011 382 SKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDC--ETYAPLLKMCCRKKRMKV 459 (546)
Q Consensus 382 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~ 459 (546)
.+.|+.+.+..+|+.....-. .-...|+..|..-.++|+.+.+..+|++....++.|-. ..|...+..-...|+-..
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 788888888888888776432 25567888888888888888888888888887766553 345555655555555554
Q ss_pred HHHHHHHH
Q 009011 460 LNFLLTHM 467 (546)
Q Consensus 460 a~~~~~~m 467 (546)
+..+=.++
T Consensus 1690 vE~VKarA 1697 (1710)
T KOG1070|consen 1690 VEYVKARA 1697 (1710)
T ss_pred HHHHHHHH
Confidence 44443333
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.00015 Score=65.97 Aligned_cols=296 Identities=11% Similarity=0.045 Sum_probs=179.7
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCC
Q 009011 238 LMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYT-CFIEHYCREKD 316 (546)
Q Consensus 238 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~ 316 (546)
+...+...|++..|+.-|....++.|.+-.++.--...|...|+-..|+.-+++.++. +||-..-. .--..+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 3344444455555555554444444444444444444455555555555444444443 33322111 11123445555
Q ss_pred hhHHHHHHHHHHHcCCCC------------C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009011 317 FRKVDDTLKEMQEKGCKP------------S--VITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILS 382 (546)
Q Consensus 317 ~~~a~~l~~~m~~~g~~p------------~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 382 (546)
+++|..=|+.+.+..... . .......+..+.-.|+...|+.....+.+.. +.|...|..-..+|.
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHH
Confidence 555555555554432110 0 0112233445667899999999999999874 579999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HH---HH------H
Q 009011 383 KAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETY----AP---LL------K 449 (546)
Q Consensus 383 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~---ll------~ 449 (546)
..|++..|..=++...+..-. +..++--+-..+...|+.+.++...++-.+. .||.... .. +. .
T Consensus 201 ~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred hcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999888877664433 4555555667778889999999888887775 4665321 11 11 1
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 009011 450 MCCRKKRMKVLNFLLTHMFKNDVSMDAGTY---ASLVRGLIESGKLELACSFFEEMISKGIVPY-HSTYKMLEEKLEKKR 525 (546)
Q Consensus 450 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g 525 (546)
.....+++.++.+-.+...+..+......| ..+-.++...|++.+|++...+..+ +.|+ ..++.-=..+|.-..
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhH
Confidence 234567788888888888876655333333 3445566678999999999999884 4466 555555566777667
Q ss_pred hhhHHHHHHHHHHHHh
Q 009011 526 LGNAKERINKLLAHAK 541 (546)
Q Consensus 526 ~~~~a~~~~~~m~~~~ 541 (546)
+++.|+.=++.....+
T Consensus 356 ~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 7777766665555443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2e-05 Score=78.20 Aligned_cols=325 Identities=17% Similarity=0.156 Sum_probs=185.8
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHH
Q 009011 156 GYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRAL 235 (546)
Q Consensus 156 g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 235 (546)
|++.-...-.+-+..+...|+-+.|-++-+. .... -..|+.|.+.|.+..|......-. .+..|....
T Consensus 584 ~~p~~eklk~sy~q~l~dt~qd~ka~elk~s------dgd~----laaiqlyika~~p~~a~~~a~n~~--~l~~de~il 651 (1636)
T KOG3616|consen 584 GHPALEKLKRSYLQALMDTGQDEKAAELKES------DGDG----LAAIQLYIKAGKPAKAARAALNDE--ELLADEEIL 651 (1636)
T ss_pred CChHHHHHHHHHHHHHHhcCchhhhhhhccc------cCcc----HHHHHHHHHcCCchHHHHhhcCHH--HhhccHHHH
Confidence 4433333445556666777777776554221 1111 123788888888887766542211 124455555
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhc-----------------------CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHH
Q 009011 236 SVLMDTLVKGNSVEHAYKVFLEFKD-----------------------CIPLSSQI-FNILIHGWCKTRKVDDAQKAMKE 291 (546)
Q Consensus 236 ~~ll~~~~~~g~~~~a~~~~~~~~~-----------------------~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~ 291 (546)
..+..++.+..-+++|-.+|+++.. .+|..+.. -......+...|+++.|...|-+
T Consensus 652 ~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfie 731 (1636)
T KOG3616|consen 652 EHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIE 731 (1636)
T ss_pred HHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHH
Confidence 5555555554444444444444432 11111111 11122222333333333333322
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 009011 292 MFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDT 371 (546)
Q Consensus 292 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 371 (546)
.. .....+.+......|.+|+.+++.+++.... ..-|..+..-|+..|+++.|.++|-+.-
T Consensus 732 a~---------~~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~-------- 792 (1636)
T KOG3616|consen 732 AN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD-------- 792 (1636)
T ss_pred hh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc--------
Confidence 21 1122345566678888888888888876432 2346777888889999999988886532
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009011 372 SFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMC 451 (546)
Q Consensus 372 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 451 (546)
.++-.|.+|.+.|++++|.++-++.. |.......|.+-..-+-.+|++.+|.++|-.+. .|+ ..|..|
T Consensus 793 -~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmy 860 (1636)
T KOG3616|consen 793 -LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMY 860 (1636)
T ss_pred -hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHH
Confidence 34557788999999999988877665 434455666666666777888888887775442 344 245667
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHH
Q 009011 452 CRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKE 531 (546)
Q Consensus 452 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 531 (546)
-+.|..+...++.++-... .-..|...+..-|-..|+...|..-|-+.. -|...++.|..++.|++|.
T Consensus 861 dk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~day 928 (1636)
T KOG3616|consen 861 DKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAY 928 (1636)
T ss_pred HhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHH
Confidence 7777777777666543321 122344555566666777777776665442 3445556666666666666
Q ss_pred HHHH
Q 009011 532 RINK 535 (546)
Q Consensus 532 ~~~~ 535 (546)
++-+
T Consensus 929 riak 932 (1636)
T KOG3616|consen 929 RIAK 932 (1636)
T ss_pred HHHh
Confidence 5543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.0005 Score=66.43 Aligned_cols=375 Identities=11% Similarity=0.083 Sum_probs=211.3
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHH
Q 009011 157 YMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALS 236 (546)
Q Consensus 157 ~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 236 (546)
.+-|..+|+.||.-+... .++++++.++++.. . .+.+...|..-|..-...++++....+|.+.... ..+...|.
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~-~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~ 90 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN-V-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWK 90 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhc-c-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHH
Confidence 455777888888877776 88888888888876 3 6667777777788888888888888888887654 23344444
Q ss_pred HHHHHHHc-cCCHHH----HHHHHHHhhcC---CCCCHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHHCCCCC
Q 009011 237 VLMDTLVK-GNSVEH----AYKVFLEFKDC---IPLSSQIFNILIHG---------WCKTRKVDDAQKAMKEMFQQGFSP 299 (546)
Q Consensus 237 ~ll~~~~~-~g~~~~----a~~~~~~~~~~---~~~~~~~~~~li~~---------~~~~g~~~~a~~~~~~m~~~g~~~ 299 (546)
.-+.---+ .|+... ..+.|+-.... .+.+..+|+..+.. |....+++...+++.++...-+.-
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 43332111 222222 22223222221 22233345444433 333445566667777766532110
Q ss_pred ------CHHHHHHHHHHH-------HhcCChhHHHHHHHHHHH--cCCCCCHH---------------HHHHHHH-----
Q 009011 300 ------DVVSYTCFIEHY-------CREKDFRKVDDTLKEMQE--KGCKPSVI---------------TYTIVMH----- 344 (546)
Q Consensus 300 ------~~~~~~~li~~~-------~~~g~~~~a~~l~~~m~~--~g~~p~~~---------------~~~~li~----- 344 (546)
|-.+|..=|+-. -+...+..|.++++++.. .|...+.. .|..+|.
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 111111111100 011233444444444332 11110000 0111111
Q ss_pred --------------------------------------------HHHhcCC-------HHHHHHHHHHHHhCCCCCCHHH
Q 009011 345 --------------------------------------------ALGKAKQ-------INEALKVYEKMKSDDCLPDTSF 373 (546)
Q Consensus 345 --------------------------------------------~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~ 373 (546)
.+...|+ .+++..+++.....-...+..+
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111121 2233333333332211122223
Q ss_pred HHHHHHHHHhc---CCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 009011 374 YSSLIFILSKA---GRVKDANEIFEDMKKQG-VVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKP-DCETYAPLL 448 (546)
Q Consensus 374 ~~~li~~~~~~---g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll 448 (546)
|..+...--.. ...+...+.++++...- ..|+ .+|...++...+...++.|..+|.+..+.+..+ ++..+++++
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~m 409 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALM 409 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHH
Confidence 32222211111 12444555555555432 2333 467788888888888999999999999887666 666777777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCh
Q 009011 449 KMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYH--STYKMLEEKLEKKRL 526 (546)
Q Consensus 449 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~ 526 (546)
.-+| .++.+.|.++|+--.+.- .-+...-...+.-+...|+-..|..+|++....++.|+. .+|..++..=..-|+
T Consensus 410 Ey~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 410 EYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 7655 578889999998766532 223445567788888999999999999999988666654 679999988888899
Q ss_pred hhHHHHHHHHHHH
Q 009011 527 GNAKERINKLLAH 539 (546)
Q Consensus 527 ~~~a~~~~~~m~~ 539 (546)
.+.+.++.+++..
T Consensus 488 L~si~~lekR~~~ 500 (656)
T KOG1914|consen 488 LNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988887753
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.8e-06 Score=78.79 Aligned_cols=251 Identities=12% Similarity=0.088 Sum_probs=156.5
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVD 321 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 321 (546)
+.+.|++.+|.-.|+......|.+...|.-|.......++-..|+..+.+..+..+. +....-.|.-.|...|.-.+|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 456666777777777766666777777777777777777777777777777665433 4555666666677777777777
Q ss_pred HHHHHHHHcCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009011 322 DTLKEMQEKGCK--------PSVITYTIVMHALGKAKQINEALKVYEKMKS-DDCLPDTSFYSSLIFILSKAGRVKDANE 392 (546)
Q Consensus 322 ~l~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~ 392 (546)
+.++..+....+ ++...-.. ..+..........++|-++.. .+..+|..++..|--.|--.|++++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 777666543210 00000000 112222334444555555443 3333667777777777777888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHh--
Q 009011 393 IFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDC-ETYAPLLKMCCRKKRMKVLNFLLTHMFK-- 469 (546)
Q Consensus 393 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~-- 469 (546)
.|+..+.... -|...||.|...++...+.++|+.-|.+..+. +|+. .....|.-.|...|.+++|...|-.++.
T Consensus 452 cf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 8887776442 26677888888888888888888888887774 5553 2333344467788888888777765543
Q ss_pred -C------CCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 009011 470 -N------DVSMDAGTYASLVRGLIESGKLELACSF 498 (546)
Q Consensus 470 -~------~~~~~~~~~~~li~~~~~~g~~~~A~~~ 498 (546)
. ...++..+|..|=.++.-.++.|-+.+.
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1 1223456777777777777777655443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.4e-08 Score=57.94 Aligned_cols=32 Identities=34% Similarity=0.736 Sum_probs=15.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 009011 296 GFSPDVVSYTCFIEHYCREKDFRKVDDTLKEM 327 (546)
Q Consensus 296 g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m 327 (546)
|+.||..||++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444555555555555554444444444
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.4e-06 Score=78.62 Aligned_cols=256 Identities=10% Similarity=0.034 Sum_probs=185.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 009011 273 IHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQI 352 (546)
Q Consensus 273 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 352 (546)
..-+.+.|++.+|.-.|+..+...+. +...|..|-..-...++-..|+..+++..+.... |....-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhH
Confidence 34466889999999999999888654 7889999999999999999999999998887433 667777888889999988
Q ss_pred HHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 353 NEALKVYEKMKSDDCL--------PDTSFYSSLIFILSKAGRVKDANEIFEDM-KKQGVVPNVLTYNTMISSACARSEEE 423 (546)
Q Consensus 353 ~~a~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~p~~~~~~~li~~~~~~g~~~ 423 (546)
..|++.++.-.....+ ++...-.. ..+.....+....++|-++ .+.+..+|......|--.|--.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 8999888876543211 00000000 1222233344445555544 44554577888888888888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009011 424 NALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMI 503 (546)
Q Consensus 424 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 503 (546)
+|.+.|+.+.... +-|..+||.|...++...+.++|...|.+.++..+. -+.+...|.-.|...|.+++|.+.|-+.+
T Consensus 448 raiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 448 RAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999998864 445678999999999999999999999999986554 23455556777889999999999887755
Q ss_pred HC---------CCCCCHHHHHHHHHHHHhcChhhHHHHHH
Q 009011 504 SK---------GIVPYHSTYKMLEEKLEKKRLGNAKERIN 534 (546)
Q Consensus 504 ~~---------g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 534 (546)
.. +-.++..+|..|-.++...++.+-+.+..
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 32 12234567777777777777777555443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.3e-08 Score=57.27 Aligned_cols=32 Identities=31% Similarity=0.604 Sum_probs=20.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009011 471 DVSMDAGTYASLVRGLIESGKLELACSFFEEM 502 (546)
Q Consensus 471 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 502 (546)
|+.||..+|+.+|.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.9e-05 Score=74.00 Aligned_cols=214 Identities=10% Similarity=0.086 Sum_probs=123.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009011 236 SVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK 315 (546)
Q Consensus 236 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 315 (546)
..+...+.+.|-...|..+|+++. .|.-+|.+|+..|+..+|..+..+..++ +||...|..+.+......
T Consensus 402 ~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 444555666666666666665543 3556666666666666666666666552 456666655555554444
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 316 DFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFE 395 (546)
Q Consensus 316 ~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 395 (546)
-+++|.++.+..-.. .-..+.....+.++++++.+.|+.-.+.+ +.-..+|-.+-.+..+.++++.|.+.|.
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 455666555543322 11111111223566666666666655543 2345556666666666667777766666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009011 396 DMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 396 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 469 (546)
...... +-+...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+....+.|.++.|.+.+..+..
T Consensus 544 rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 544 RCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 665432 1234567777777777777777777777666655 33344455555556666777777766666655
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-05 Score=69.52 Aligned_cols=159 Identities=12% Similarity=0.097 Sum_probs=97.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 009011 201 STIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTR 280 (546)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 280 (546)
...-..+...|+-+.+..+....... ...|.......+....+.|++..|...+.+....-|+|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 44455555556666665555554322 24445555556666667777777777777666666667777777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 281 KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYE 360 (546)
Q Consensus 281 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 360 (546)
++++|..-|.+..+..+. +...++.+.-.|.-.|+++.|..++......+.. |...-..+.......|++++|.++..
T Consensus 149 r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 777777776666665332 3444555555666667777777777666655433 44455556666666677777666654
Q ss_pred HH
Q 009011 361 KM 362 (546)
Q Consensus 361 ~~ 362 (546)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 43
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.4e-05 Score=81.16 Aligned_cols=240 Identities=10% Similarity=0.124 Sum_probs=130.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHH
Q 009011 193 GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDT-RALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNI 271 (546)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 271 (546)
.+.+...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++.+.+..+ .
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~ 88 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL----------------N 88 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh----------------h
Confidence 3455666777777777777777777777755543 2332 2233333344444444433322 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009011 272 LIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQ 351 (546)
Q Consensus 272 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~ 351 (546)
++.......++.-...+...|...+ -+...+..+..+|-+.|+.+++..+|+++.+.. +-|....|.+...|+.. +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 2222223333333333333444332 123355566666777777777777777777665 33566666666666666 6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009011 352 INEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQK 431 (546)
Q Consensus 352 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 431 (546)
+++|.+++.+.... |...+++.++.++|.++.... |+ +.+.-..+.+.
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~~k 212 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIERK 212 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHHHH
Confidence 77777666665543 445556666666666666532 22 11222222222
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009011 432 MEED-LCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLI 487 (546)
Q Consensus 432 m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 487 (546)
+... |..--..++-.+-..|-..++++++..+++.+.+.... |.....-++.+|.
T Consensus 213 i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 213 VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 2221 11222345555666677777788888888888876655 5556666666664
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-05 Score=70.62 Aligned_cols=128 Identities=16% Similarity=0.187 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
+....+..+....++|++..|+..|++..... ++|..+++.+.-+|.+.|+++.|..-|.+..+-.+.+....|.|.-.
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms 177 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMS 177 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHH
Confidence 33344444444444455555555554444322 44444445444445555555555544444444444444444555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009011 276 WCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLK 325 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~ 325 (546)
+.-.|+.+.|+.++......+.. |...-..+.......|++++|.++..
T Consensus 178 ~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 178 LLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 55555555555554444443222 33333444444444455555544443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00011 Score=64.45 Aligned_cols=246 Identities=12% Similarity=0.073 Sum_probs=153.8
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH-HH
Q 009011 244 KGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKV-DD 322 (546)
Q Consensus 244 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a-~~ 322 (546)
-.|++..+...-..... .+.+...-.-+-+.|...|...... .++.... .|.......+.......++.++. -+
T Consensus 20 Y~Gnyq~~ine~~~~~~-~~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 20 YLGNYQQCINEAEKFSS-SKTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNKKSILAS 94 (299)
T ss_pred HhhHHHHHHHHHHhhcc-ccchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchhHHHHHH
Confidence 34555555554443332 1234444555666777777654332 2333222 33444444443333334444433 34
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009011 323 TLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGV 402 (546)
Q Consensus 323 l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 402 (546)
+.+.+.......+......-...|++.|++++|++..+... +......=+..+.+..+++-|...+++|.+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 44555555444454445555667888899999988887621 3333444455677888889999999999874
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 009011 403 VPNVLTYNTMISSACA----RSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGT 478 (546)
Q Consensus 403 ~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 478 (546)
-+..+.+.|..++.+ .+....|.-+|++|.+. ..|+..+.+....++...|++++|..++++....... +..+
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpet 243 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPET 243 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHH
Confidence 366677777777654 45678888899998764 4788888888888888999999999999998887766 6666
Q ss_pred HHHHHHHHHHcCChHH-HHHHHHHHHHC
Q 009011 479 YASLVRGLIESGKLEL-ACSFFEEMISK 505 (546)
Q Consensus 479 ~~~li~~~~~~g~~~~-A~~~~~~m~~~ 505 (546)
...+|..-...|...+ -.+.+.+++..
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 6666666555666544 45566666543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.6e-05 Score=81.20 Aligned_cols=149 Identities=10% Similarity=-0.010 Sum_probs=130.4
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHH
Q 009011 155 TGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRA 234 (546)
Q Consensus 155 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 234 (546)
..|.++...+-.|..+..+.|.+++|..+++...+ . .|.+......+...+.+.+++++|+..+++..... +.+...
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~-~-~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~ 156 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ-R-FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSARE 156 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-h-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHH
Confidence 56888899999999999999999999999999998 4 67788899999999999999999999999998764 556677
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009011 235 LSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCF 307 (546)
Q Consensus 235 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 307 (546)
...+..++.+.|+.++|..+|+++....|.+..++..+...+.+.|+.++|...|++..+.-- +....|+..
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-~~~~~~~~~ 228 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-DGARKLTRR 228 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-cchHHHHHH
Confidence 788888899999999999999999887788899999999999999999999999999987521 234455444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-05 Score=72.73 Aligned_cols=190 Identities=9% Similarity=0.014 Sum_probs=129.7
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-CC-HHH
Q 009011 158 MHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGY-VSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVE-KD-TRA 234 (546)
Q Consensus 158 ~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~-~~~ 234 (546)
......+-.+...+.+.|+++.|...|+++....+.. ....++..+...+.+.|++++|+..|+++.+.... +. ..+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4456677888888999999999999999988733111 12357778889999999999999999999764311 11 124
Q ss_pred HHHHHHHHHcc--------CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009011 235 LSVLMDTLVKG--------NSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTC 306 (546)
Q Consensus 235 ~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 306 (546)
+..+..++... |+.++|.+.++.+....|.+...+..+..... ... .. ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~------~~--------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRN------RL--------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHH------HH--------HHHHHH
Confidence 44444555443 67888888888887766666555433322111 000 00 001124
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009011 307 FIEHYCREKDFRKVDDTLKEMQEKGC--KPSVITYTIVMHALGKAKQINEALKVYEKMKSD 365 (546)
Q Consensus 307 li~~~~~~g~~~~a~~l~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 365 (546)
+...|.+.|++++|...++...+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55678888999999999999887632 223567888889999999999999988888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00013 Score=64.06 Aligned_cols=251 Identities=16% Similarity=0.143 Sum_probs=151.9
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 204 MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVD 283 (546)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 283 (546)
++-+.-.|++..++..-...... +.+...-..+-++|...|.... ...+++.+..+.....-.+......-++.+
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~---~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQI---VISEIKEGKATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccc---cccccccccCChHHHHHHHHHHhhCcchhH
Confidence 44555567777766655544322 2444444555566666665442 222333333333333333333333344444
Q ss_pred HHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 284 DAQ-KAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKM 362 (546)
Q Consensus 284 ~a~-~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 362 (546)
+.. ++.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+.+.|.+.+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 334444444333333333333456888899999988877621 2333333445566778889999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 363 KSDDCLPDTSFYSSLIFILSK----AGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCK 438 (546)
Q Consensus 363 ~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 438 (546)
.+-. +..+.+.|..++.+ .+.+.+|.-+|++|.+ ...|+..+.+-...++...|++++|..++++..... .
T Consensus 164 q~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~ 238 (299)
T KOG3081|consen 164 QQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-A 238 (299)
T ss_pred Hccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-C
Confidence 8753 55666666666654 4568889999999986 356888888888888889999999999999988775 4
Q ss_pred CCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhC
Q 009011 439 PDCETYAPLLKMCCRKKRM-KVLNFLLTHMFKN 470 (546)
Q Consensus 439 p~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~ 470 (546)
-++.+...++-+-...|.. +...+.+...+..
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 4566766666555555554 4445556665554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.53 E-value=2e-05 Score=71.96 Aligned_cols=187 Identities=12% Similarity=0.039 Sum_probs=132.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHH---
Q 009011 194 YVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDT---RALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQ--- 267 (546)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--- 267 (546)
......+..+...+.+.|++++|...|+++.+.. +.+. .++..+..++...|++++|...++++.+..|.+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 4457778888889999999999999999987643 2222 46677788899999999999999998776554443
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 009011 268 IFNILIHGWCKT--------RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITY 339 (546)
Q Consensus 268 ~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~ 339 (546)
++..+..++.+. |+.++|.+.++++....+. +...+..+..... ... ... ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~--------~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA--------GKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH--------HHH
Confidence 455566666554 7788899999988876332 2222222211100 000 000 012
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 340 TIVMHALGKAKQINEALKVYEKMKSDDC--LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ 400 (546)
Q Consensus 340 ~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 400 (546)
..+...+.+.|++++|...+....+... +.....+..+..++.+.|++++|...++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2456678999999999999999987632 224578889999999999999999999988764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.7e-05 Score=78.97 Aligned_cols=222 Identities=15% Similarity=0.143 Sum_probs=180.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 009011 262 IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTI 341 (546)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ 341 (546)
.||--..--.+...+.+.|-..+|..+++++. .|.-.|.+|+..|+..+|..+..+-.+ -+||...|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHH
Confidence 44555556778889999999999999998875 467778899999999999999988887 4788999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009011 342 VMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSE 421 (546)
Q Consensus 342 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 421 (546)
+.+......-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+.. +.-..+|-..-.+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 888877777788888888765432 22223333345789999999999877643 2356788888888889999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 009011 422 EENALKLLQKMEEDLCKPD-CETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFE 500 (546)
Q Consensus 422 ~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 500 (546)
+..|.+.|..-... .|| ...|+.+-.+|.+.|+-.+|...+++..+.+.. +-.+|...+....+.|.+++|.+.+.
T Consensus 535 ~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHH
Confidence 99999999988765 455 578999999999999999999999999998744 66788888889999999999999999
Q ss_pred HHHHC
Q 009011 501 EMISK 505 (546)
Q Consensus 501 ~m~~~ 505 (546)
++.+.
T Consensus 612 rll~~ 616 (777)
T KOG1128|consen 612 RLLDL 616 (777)
T ss_pred HHHHh
Confidence 88764
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.2e-05 Score=75.96 Aligned_cols=294 Identities=15% Similarity=0.158 Sum_probs=176.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 009011 201 STIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTR 280 (546)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 280 (546)
.+.++.+...|+-++|-++-+ .+..+ ...+..|.+.|....|......-. .+..|..+...+..++.+..
T Consensus 593 ~sy~q~l~dt~qd~ka~elk~--------sdgd~-laaiqlyika~~p~~a~~~a~n~~-~l~~de~il~~ia~alik~e 662 (1636)
T KOG3616|consen 593 RSYLQALMDTGQDEKAAELKE--------SDGDG-LAAIQLYIKAGKPAKAARAALNDE-ELLADEEILEHIAAALIKGE 662 (1636)
T ss_pred HHHHHHHHhcCchhhhhhhcc--------ccCcc-HHHHHHHHHcCCchHHHHhhcCHH-HhhccHHHHHHHHHHHHhhH
Confidence 344667777788777765421 11122 234567888888777766542111 12234444444444444444
Q ss_pred CHHHHHHHHHHHHHC----------------------CCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 009011 281 KVDDAQKAMKEMFQQ----------------------GFSPDVVSY-TCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVI 337 (546)
Q Consensus 281 ~~~~a~~~~~~m~~~----------------------g~~~~~~~~-~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 337 (546)
-+++|-++|+++..- .++..+++. ...-..+...|+++.|...|-+..
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~--------- 733 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN--------- 733 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------
Confidence 444444444444320 000011110 011122233344444444333221
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 338 TYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSAC 417 (546)
Q Consensus 338 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 417 (546)
.....+.+.....++.+|+.+++.+..... -..-|..+.+.|...|+++.|.++|.+.- .++-.|..|.
T Consensus 734 ~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~ 802 (1636)
T KOG3616|consen 734 CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYG 802 (1636)
T ss_pred hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHh
Confidence 122345566677889999999998887642 34567788899999999999999997642 3556788899
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 009011 418 ARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACS 497 (546)
Q Consensus 418 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 497 (546)
+.|+++.|.++-++.. |.......|..-..-.-..|++.+|.+++-.+.+ |+ .-|..|-+.|..++.++
T Consensus 803 k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmir 871 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIR 871 (1636)
T ss_pred ccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHH
Confidence 9999999999877653 2233445566666667788999999888755432 33 34788889999999998
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHH
Q 009011 498 FFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLA 538 (546)
Q Consensus 498 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 538 (546)
+.++-... --..|...+..-|...|+.++|++-+-...
T Consensus 872 lv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 872 LVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred HHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 88765311 123455666777777788777776554443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.9e-05 Score=69.35 Aligned_cols=119 Identities=6% Similarity=0.117 Sum_probs=66.4
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH-HhcCC--HHHHH
Q 009011 210 GGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGW-CKTRK--VDDAQ 286 (546)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~a~ 286 (546)
.++.++++..++...+.. +.|...|..+...|...|+.++|...|++.....|.+..++..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 344455555555554433 455555566666666666666666666655555555555555555542 44444 35666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009011 287 KAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEK 330 (546)
Q Consensus 287 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 330 (546)
+++++..+.... +..++..+...+.+.|++++|...|+.+.+.
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666666555443 4455555555555666666666666665554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.4e-05 Score=67.03 Aligned_cols=154 Identities=9% Similarity=0.143 Sum_probs=108.6
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 204 MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVD 283 (546)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 283 (546)
+..|...|+++.+....+.+.. |. ..+...++.+++...++......|.+...|..+...|...|+++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence 4567777887776555433321 10 01123555667777777776677888888888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 284 DAQKAMKEMFQQGFSPDVVSYTCFIEH-YCREKD--FRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYE 360 (546)
Q Consensus 284 ~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~--~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 360 (546)
+|...|++....... +...+..+..+ +...|+ .++|.+++++..+.+.. +...+..+...+.+.|++++|...|+
T Consensus 91 ~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 91 NALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888887554 66677777665 356666 48888888888887544 66777778888888888888888888
Q ss_pred HHHhCCCCCCHH
Q 009011 361 KMKSDDCLPDTS 372 (546)
Q Consensus 361 ~~~~~~~~~~~~ 372 (546)
++.+.. +|+..
T Consensus 169 ~aL~l~-~~~~~ 179 (198)
T PRK10370 169 KVLDLN-SPRVN 179 (198)
T ss_pred HHHhhC-CCCcc
Confidence 888765 34443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00087 Score=67.91 Aligned_cols=201 Identities=15% Similarity=0.198 Sum_probs=102.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009011 269 FNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGK 348 (546)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~ 348 (546)
|.++++..|-.|+.++|-++-++-. |......+.+.|-..|++.+|..+|.+... +...|+.|-.
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKE 1005 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKE 1005 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHh
Confidence 4444444445555555544433321 444555566667677777777776665432 2223332221
Q ss_pred cC---------------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHHCC--CC
Q 009011 349 AK---------------QINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFED--------MKKQG--VV 403 (546)
Q Consensus 349 ~g---------------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~~--~~ 403 (546)
.+ +.-.|-++|++. |.. +...+..|-++|.+.+|+++--+ ++... ..
T Consensus 1006 nd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~ 1077 (1416)
T KOG3617|consen 1006 NDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG 1077 (1416)
T ss_pred cCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC
Confidence 11 122222333321 111 12234457777777777665321 11222 23
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCHH----H
Q 009011 404 PNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK-NDVSMDAG----T 478 (546)
Q Consensus 404 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~----~ 478 (546)
.|+...+....-++.+.++++|..++-...+ |...+.. |+..++....++-+.|.- ++-.|+.. .
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~Alql-C~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~v 1147 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQL-CKNRNVRVTEEFAELMTPTKDDMPNEQERKQV 1147 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHH-HhcCCCchhHHHHHhcCcCcCCCccHHHHHHH
Confidence 3556666666677777788888877765543 3333333 333444444444444432 22334433 4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 009011 479 YASLVRGLIESGKLELACSFFEEM 502 (546)
Q Consensus 479 ~~~li~~~~~~g~~~~A~~~~~~m 502 (546)
...+...|.++|.+..|.+-|.+.
T Consensus 1148 Leqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1148 LEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHhccchHHHHHHHhhh
Confidence 556667788889888888777665
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00016 Score=75.49 Aligned_cols=183 Identities=10% Similarity=0.120 Sum_probs=139.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 009011 193 GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNIL 272 (546)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 272 (546)
.+.+...+-.|.....+.|++++|..+++...+.. +.+......+..++.+.+++++|...+++.....|.+....+.+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 45568889899999999999999999999998752 44456677888889999999999999999998889999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 009011 273 IHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQI 352 (546)
Q Consensus 273 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 352 (546)
..++.+.|+.++|..+|+++...+. -+..++..+..++-..|+.++|...|+...+.. .+....|+..+ +++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHH
Confidence 9999999999999999999998543 257788888889999999999999999988762 33445555443 234
Q ss_pred HHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhc
Q 009011 353 NEALKVYEKMKSDD----CLPDTSFYSSLIFILSKA 384 (546)
Q Consensus 353 ~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~ 384 (546)
..-...++.+.-.+ .+....+...+|..|.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 233 NADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 44455565554332 223344555666666654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0012 Score=68.55 Aligned_cols=183 Identities=9% Similarity=0.008 Sum_probs=130.8
Q ss_pred ChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009011 140 DLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEA 219 (546)
Q Consensus 140 ~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 219 (546)
+...++..|..+.+. -.-=...|..|...|....+...|.+-|+...+ - +..+..........|++..+++.|..+
T Consensus 473 ~~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFe-L-Datdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 473 NSALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFE-L-DATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-CchhhhhHHHHHHHhhccccHHHHHHH
Confidence 444455555444321 112235788899999998899999999999887 4 667778888899999999999999988
Q ss_pred HHHhhhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 220 FRGMKKYG-VEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFS 298 (546)
Q Consensus 220 ~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 298 (546)
.-..-+.. ...-..-+..+.-.+.+.++...+..-|+......|.|...|..+..+|..+|.+..|.++|++.....
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-- 626 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-- 626 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--
Confidence 33322211 011122233344557788999999999998888889999999999999999999999999999887652
Q ss_pred CCHHHHHH--HHHHHHhcCChhHHHHHHHHHHH
Q 009011 299 PDVVSYTC--FIEHYCREKDFRKVDDTLKEMQE 329 (546)
Q Consensus 299 ~~~~~~~~--li~~~~~~g~~~~a~~l~~~m~~ 329 (546)
|+ .+|.. ....-+..|.+.+++..+.....
T Consensus 627 P~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 PL-SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22 22322 22345677888888888777654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00043 Score=66.24 Aligned_cols=123 Identities=13% Similarity=0.063 Sum_probs=63.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 009011 270 NILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPS-VITYTIVMHALGK 348 (546)
Q Consensus 270 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~~~~~li~~~~~ 348 (546)
.-....+...|+.++|+..++.+...-+. |...+....+.+.+.++.++|.+.++.+... .|+ ....-.+..++.+
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~ 386 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHh
Confidence 33334444555555565555555544221 3333344445555556666666655555554 222 3333444555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009011 349 AKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFED 396 (546)
Q Consensus 349 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 396 (546)
.|++.+|+.+++...... +.|...|..|..+|...|+..++..-..+
T Consensus 387 ~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 387 GGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred cCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 666666665555555443 34555556666666666655555544443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00015 Score=76.41 Aligned_cols=240 Identities=10% Similarity=0.089 Sum_probs=158.2
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009011 230 KDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIE 309 (546)
Q Consensus 230 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 309 (546)
.+...+..|+..+...+++++|.++.+......|.....|..+...+.+.++.+++..+ . ++.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~ 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--N---------------LID 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--h---------------hhh
Confidence 34556677777777788888888887766666666666666666666666665555444 2 222
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009011 310 HYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKD 389 (546)
Q Consensus 310 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 389 (546)
......++.-+..+...|.+.+ -+...+..+..+|-+.|+.+++..+|+++.+.+ +-|..+.|.+...|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 2333344444444444554432 234467778888888888888888888888877 55788888888888888 8888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009011 390 ANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 390 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 469 (546)
|.+++.+.... +...+++..+.++|.++.+.. +-+...|..+++.....
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~--------------- 216 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGH--------------- 216 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhh---------------
Confidence 88888777653 555668888888888887763 22223333333222221
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 470 NDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLE 522 (546)
Q Consensus 470 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 522 (546)
.+..--..++-.+...|-..++++++..+++...+..- -|.....-++.+|.
T Consensus 217 ~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 217 REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHH
Confidence 12223445666677778889999999999999997642 25566777777775
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.1e-05 Score=62.47 Aligned_cols=95 Identities=13% Similarity=-0.075 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 009011 200 MSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKT 279 (546)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 279 (546)
+......+.+.|++++|...|+...... +.+..++..+..++...|++++|...|+......|.+...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3344556666666666666666666543 445566666666666666666666666666665666666666666666666
Q ss_pred CCHHHHHHHHHHHHHC
Q 009011 280 RKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 280 g~~~~a~~~~~~m~~~ 295 (546)
|+.++|...|+.....
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666666654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.6e-05 Score=63.83 Aligned_cols=109 Identities=6% Similarity=-0.147 Sum_probs=94.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 009011 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLV 243 (546)
Q Consensus 164 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 243 (546)
+..+...+...|++++|...|+.... . .+.+...|..+...+.+.|++++|+..|+...+.. +.+..++..+..++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~-~-~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM-A-QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-c-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 44567788899999999999999987 4 67889999999999999999999999999998864 678889999999999
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 244 KGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 244 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
..|+.++|...|+......|.+...+......
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 99999999999999888777777776554443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0011 Score=58.04 Aligned_cols=186 Identities=12% Similarity=0.083 Sum_probs=96.1
Q ss_pred CChHHHHHHHHHhhh---CC-CCCCHHH-HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 211 GRYDDAVEAFRGMKK---YG-VEKDTRA-LSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDA 285 (546)
Q Consensus 211 g~~~~A~~~~~~m~~---~~-~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 285 (546)
.+.++.++++.++.. .| ..++..+ |..++-+....|+.+.|...++.+...+|.+..+--.-.-.+-..|.+++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 356666666666532 23 3444443 334444555566666666666666665655544433333334445666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009011 286 QKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSD 365 (546)
Q Consensus 286 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 365 (546)
.++++.+.+..+. |.+++--=+...-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-.
T Consensus 106 ~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 6666666655422 4444444444444455555555555555544 3335666666666666666666666666666544
Q ss_pred CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q 009011 366 DCLPDTSFYSSLIFILSKAG---RVKDANEIFEDMKK 399 (546)
Q Consensus 366 ~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~ 399 (546)
. |.+...+..+.+.+.-.| +++-|.+.|.+..+
T Consensus 184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2 223333333333332222 34445555555554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0014 Score=57.34 Aligned_cols=170 Identities=11% Similarity=0.046 Sum_probs=106.4
Q ss_pred CCCCHH-HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHH
Q 009011 157 YMHTPE-MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRAL 235 (546)
Q Consensus 157 ~~~~~~-~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 235 (546)
..++.. +|..++-+....|+.+.|...++.+..+ .+.+......-.-.+-..|++++|+++|+.+.+.+ +.|..++
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~ 123 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIR 123 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHH
Confidence 444443 3666777777788888888888887763 33333332222333445678888888888887765 5666666
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009011 236 SVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK 315 (546)
Q Consensus 236 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 315 (546)
..=+...-..|+.-+|.+-+....+.++.|...|.-+...|...|++++|.-.++++.-..+. +...+..+.+.+.-.|
T Consensus 124 KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 124 KRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQG 202 (289)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHh
Confidence 665656666666667777777777777778888888888888888888888777777665322 2333333333333222
Q ss_pred ---ChhHHHHHHHHHHHc
Q 009011 316 ---DFRKVDDTLKEMQEK 330 (546)
Q Consensus 316 ---~~~~a~~l~~~m~~~ 330 (546)
+.+.+.++|.+..+.
T Consensus 203 g~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 203 GAENLELARKYYERALKL 220 (289)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 344555566555554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0013 Score=63.08 Aligned_cols=257 Identities=12% Similarity=0.035 Sum_probs=170.0
Q ss_pred HHHhhcCChhHHHHHHHHHHhC--CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHh
Q 009011 133 TLRRFSNDLTPAFGFFTWAKTQ--TGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELN-NGYVSLATMSTIMRRLVR 209 (546)
Q Consensus 133 ~l~~~~~~~~~a~~~f~~~~~~--~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~-~~~~~~~~~~~li~~~~~ 209 (546)
.|.+...++.....||+.+..+ .+-.|.. .++..=.-..++..+...-+.++... ...++...+...+.+...
T Consensus 211 ~L~raGydp~gM~~ff~rl~~~~~~~~~~p~----yl~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~ 286 (484)
T COG4783 211 TLVRAGYDPQGMPEFFERLADQLRYGGQPPE----YLLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYE 286 (484)
T ss_pred HHHHcCCCchhHHHHHHHHHHHHhcCCCCCh----HHhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhc
Confidence 4444456788889999988742 2222322 24444445566677777777776532 134566666666665554
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 210 GGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAM 289 (546)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 289 (546)
...-..+..++.+-.+. .-..--|..-+ .+...|+.++|+..+..+....|.|+..+......+.+.++.++|.+.+
T Consensus 287 ~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~ 363 (484)
T COG4783 287 ALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERL 363 (484)
T ss_pred cccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 44434444443333321 11222233333 3456788899999998888888888888888899999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 009011 290 KEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLP 369 (546)
Q Consensus 290 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 369 (546)
+.+....+. ....+-.+..+|.+.|++.+|..+++...... +-|...|..+..+|...|+..++..-..
T Consensus 364 ~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A--------- 432 (484)
T COG4783 364 KKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA--------- 432 (484)
T ss_pred HHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH---------
Confidence 998887332 25566677788889999999999998887764 4478889999999999888887765543
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHH
Q 009011 370 DTSFYSSLIFILSKAGRVKDANEIFEDMKKQG--VVPNVLTYNTMISSA 416 (546)
Q Consensus 370 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~ 416 (546)
..|...|++++|...+....+.. ..|+-.-+...|...
T Consensus 433 ---------E~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~~ 472 (484)
T COG4783 433 ---------EGYALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQL 472 (484)
T ss_pred ---------HHHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 44566788888888887776642 123333344455443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.013 Score=60.41 Aligned_cols=224 Identities=13% Similarity=0.152 Sum_probs=129.2
Q ss_pred cCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 009011 173 KSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAY 252 (546)
Q Consensus 173 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 252 (546)
..+++..|....+.+.++.+..+...++.++ ...+.|+.++|..+++.....+ ..|..|...+-.+|.+.++.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHH
Confidence 4566777777777776633222222222222 2456777777777777765544 236777777777777777777777
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-C---------hhHHHH
Q 009011 253 KVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK-D---------FRKVDD 322 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~---------~~~a~~ 322 (546)
.+|+......|. ......+..+|.+.+++.+-.++--+|-+.-++ +...+-++++.+...- . ..-|.+
T Consensus 98 ~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 98 HLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 777777765554 666666777777777766554444444332111 3333334444333321 1 123444
Q ss_pred HHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 323 TLKEMQEKG-CKPSVITYTIVMHALGKAKQINEALKVY-EKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ 400 (546)
Q Consensus 323 l~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 400 (546)
.++.+.+.+ -.-+..-...-...+...|.+++|.+++ ....+.-...+...-+.-+..+...+++.+..++-.++..+
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 455555443 2112222223334455677788888887 33333333344555566777788888888888888888777
Q ss_pred C
Q 009011 401 G 401 (546)
Q Consensus 401 ~ 401 (546)
|
T Consensus 256 ~ 256 (932)
T KOG2053|consen 256 G 256 (932)
T ss_pred C
Confidence 6
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.9e-05 Score=72.19 Aligned_cols=126 Identities=13% Similarity=0.163 Sum_probs=88.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTL 242 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 242 (546)
.-..|+..+...++++.|..+|+++.+.. |. ....+++.+...++..+|++++++..+.. +.+...+..-...|
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~---pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD---PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC---Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34455666666778888888888877632 33 33446777777777777888887776542 45666666666677
Q ss_pred HccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 243 VKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 243 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (546)
.+.++.+.|.++.++.....|.+..+|..|..+|.+.|++++|+..++.+.-
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 7777778888777777777777777777788888888888877777776653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00012 Score=60.30 Aligned_cols=99 Identities=17% Similarity=0.166 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
+......+...+.+.|++++|.+.|+.+...+ +.+...+..+..++...|++++|...++......|.+...+..+...
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~ 94 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAEC 94 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 33444455555555566666666665555433 33445555555555555555555555555544445555555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 009011 276 WCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~ 295 (546)
+...|++++|...|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 55555555555555555543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00014 Score=59.74 Aligned_cols=96 Identities=16% Similarity=0.046 Sum_probs=51.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009011 234 ALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR 313 (546)
Q Consensus 234 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 313 (546)
....+...+...|+.++|.+.++.+....|.+...+..+...+.+.|++++|..+++.....+.. +...+..+...|..
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~ 97 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHH
Confidence 34444445555555566655555555444555555555555555555555555555555444322 34444444555555
Q ss_pred cCChhHHHHHHHHHHHc
Q 009011 314 EKDFRKVDDTLKEMQEK 330 (546)
Q Consensus 314 ~g~~~~a~~l~~~m~~~ 330 (546)
.|++++|...|+...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 55555555555555543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0077 Score=62.78 Aligned_cols=150 Identities=16% Similarity=0.076 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009011 141 LTPAFGFFTWAKTQTGYM-HTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEA 219 (546)
Q Consensus 141 ~~~a~~~f~~~~~~~g~~-~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 219 (546)
...|.+-|+-+. .+. -+...+....+.|++..+++.|..+.-...+..+...-...|....-.|.+.++...|+.-
T Consensus 508 m~RA~kCf~KAF---eLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~ 584 (1238)
T KOG1127|consen 508 MKRAKKCFDKAF---ELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCE 584 (1238)
T ss_pred HHHHHHHHHHHh---cCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHH
Confidence 334444444443 222 3455678899999999999999888444333111111122222334456677788888888
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 220 FRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 220 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (546)
|+...+.. +.|...+..+..+|.+.|....|.++|.+...-.|.+...-.-..-.-+..|.+.+|...+.....
T Consensus 585 fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 585 FQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 88877654 667788888888888888888888888877665555555444455556677888888877776653
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00017 Score=69.47 Aligned_cols=129 Identities=18% Similarity=0.197 Sum_probs=105.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
+-.....++..+...++++.|+++|+++.+.. |+. ...+...+...++-.+|.+++++.....|.+......-...
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF 243 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34455566777778899999999999998753 553 44577777778888899999988887788888888888899
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009011 276 WCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQE 329 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (546)
+.+.++.+.|+.+.+++.+..+. +..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999999999887433 566999999999999999999988887653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.03 E-value=1e-05 Score=48.46 Aligned_cols=33 Identities=42% Similarity=0.812 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 009011 478 TYASLVRGLIESGKLELACSFFEEMISKGIVPY 510 (546)
Q Consensus 478 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 510 (546)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888886
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.6e-06 Score=48.84 Aligned_cols=33 Identities=27% Similarity=0.619 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 009011 303 SYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPS 335 (546)
Q Consensus 303 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 335 (546)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555544
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.028 Score=58.21 Aligned_cols=101 Identities=17% Similarity=0.103 Sum_probs=48.7
Q ss_pred cCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 009011 173 KSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAY 252 (546)
Q Consensus 173 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 252 (546)
+.|+.++|..+++..... ...+..|...+-..|.+.|+.++|..+|+..... .|+......+..+|.+.+++.+-.
T Consensus 55 r~gk~~ea~~~Le~~~~~--~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 55 RLGKGDEALKLLEALYGL--KGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HhcCchhHHHHHhhhccC--CCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555544431 2224555555555555555555555555555432 344444445555555555554444
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHH
Q 009011 253 KVFLEFKDCIPLSSQIFNILIHGWC 277 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~li~~~~ 277 (546)
++--++.+..|.+...+-+++..+.
T Consensus 131 kaa~~LyK~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 131 KAALQLYKNFPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHHHHhCCcccchHHHHHHHHH
Confidence 4443333344444444444444433
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.3e-05 Score=47.69 Aligned_cols=33 Identities=33% Similarity=0.636 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 009011 477 GTYASLVRGLIESGKLELACSFFEEMISKGIVP 509 (546)
Q Consensus 477 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 509 (546)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00081 Score=55.94 Aligned_cols=125 Identities=14% Similarity=0.138 Sum_probs=69.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCH--HHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVS---LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDT--RALSV 237 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~ 237 (546)
.|..++..+. .++...+.+.++.+.... +.+ ....-.+...+...|++++|...|++.......++. .....
T Consensus 14 ~y~~~~~~~~-~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQALQ-AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 4455555553 666666666666666632 222 233334456666677777777777776665422221 12333
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009011 238 LMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKE 291 (546)
Q Consensus 238 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 291 (546)
+..++...|++++|...++.... .+.....+......|.+.|+.++|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45556666666666666655332 223444555566666666666666666654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00073 Score=56.21 Aligned_cols=114 Identities=11% Similarity=0.140 Sum_probs=44.4
Q ss_pred cCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhH
Q 009011 245 GNSVEHAYKVFLEFKDCIPLS---SQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDV--VSYTCFIEHYCREKDFRK 319 (546)
Q Consensus 245 ~g~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~ 319 (546)
.++...+...++.+....|.+ ....-.+...+...|++++|...|+........++. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 344444444444444433333 122222334444444555555554444444321111 122223344444444444
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 320 VDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYE 360 (546)
Q Consensus 320 a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 360 (546)
|+..++...... .....+......+.+.|+.++|...|+
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444443322111 122233334444444444444444443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00021 Score=69.29 Aligned_cols=124 Identities=16% Similarity=0.132 Sum_probs=79.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 009011 296 GFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEK--GCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSF 373 (546)
Q Consensus 296 g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 373 (546)
+...+......+++.+....+.+.+..++-..... ....-..|..++++.|.+.|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34445666666666666666677777766666654 1211223445777777777777777777777777777777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009011 374 YSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACAR 419 (546)
Q Consensus 374 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 419 (546)
++.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777776655555556655555555443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.5e-05 Score=46.41 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 009011 303 SYTCFIEHYCREKDFRKVDDTLKEMQEKGCK 333 (546)
Q Consensus 303 ~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 333 (546)
+|+.+|.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444433
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00027 Score=68.47 Aligned_cols=118 Identities=14% Similarity=0.134 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 009011 404 PNVLTYNTMISSACARSEEENALKLLQKMEED--LCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYAS 481 (546)
Q Consensus 404 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 481 (546)
.+......++..+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.+..+++.=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34455555555555555556666665555443 1112223444666666666666666666666666666666666666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009011 482 LVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKL 521 (546)
Q Consensus 482 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 521 (546)
++..+.+.|++..|.++..+|...+...+..|+...+.+|
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 6666666666666666666666555555555555444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.028 Score=53.16 Aligned_cols=309 Identities=15% Similarity=0.123 Sum_probs=167.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTL 242 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 242 (546)
.|..+...-...|+.+.|..+++.= |+..-- +..+.+.|..+.| +.+..+.| .||.. |..|+..-
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~E-------p~~~~q---VplLL~m~e~e~A---L~kAi~Sg-D~DLi-~~vLl~L~ 66 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLELE-------PRASKQ---VPLLLKMGEDELA---LNKAIESG-DTDLI-YLVLLHLK 66 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHcC-------CChHHH---HHHHhcCCchHHH---HHHHHHcC-CccHH-HHHHHHHH
Confidence 3566777777889998888887632 222222 5556667776666 44455544 44443 33333322
Q ss_pred HccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009011 243 VKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDD 322 (546)
Q Consensus 243 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 322 (546)
-.. ... +++. +....|.. ..+...|++..+.+.-..+|.+-.+. .......+-.++.. .+.+.-..
T Consensus 67 ~~l-~~s---~f~~-il~~~p~a----~~l~~~~~r~~~~~~L~~~y~q~d~~----~~~a~~~l~~~~~~-~~~~~~~~ 132 (319)
T PF04840_consen 67 RKL-SLS---QFFK-ILNQNPVA----SNLYKKYCREQDRELLKDFYYQEDRF----QELANLHLQEALSQ-KDVEEKIS 132 (319)
T ss_pred HhC-CHH---HHHH-HHHhCcch----HHHHHHHHHhccHHHHHHHHHhcchH----HHHHHHHHHHHHhC-CChHHHHH
Confidence 222 121 1222 22222221 33445566666666555555432211 11112222222222 34333333
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH---HH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 323 TLKEMQEK-GCKPSVITYTIVMHALGKAKQINEALKVYEK---MK-SDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDM 397 (546)
Q Consensus 323 l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~---~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 397 (546)
.+....+. +...+......++ ++-.++++. +. +.+......+.+..|.-+...|+...|.++-.+.
T Consensus 133 ~L~~a~~~y~~~k~~~f~~~~~---------e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~F 203 (319)
T PF04840_consen 133 FLKQAQKLYSKSKNDAFEAKLI---------EEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEF 203 (319)
T ss_pred HHHHHHHHHHhcchhHHHHHHH---------HHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 33333221 0001111111111 111122211 11 1111122234455566777889999998887776
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 009011 398 KKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAG 477 (546)
Q Consensus 398 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 477 (546)
. .|+..-|...+.+++..++|++..++... +-++.-|..++.+|.+.|...+|..++..+
T Consensus 204 k----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k~---------- 263 (319)
T PF04840_consen 204 K----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPKI---------- 263 (319)
T ss_pred C----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHhC----------
Confidence 4 47999999999999999999988876532 224578999999999999999999988772
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHH
Q 009011 478 TYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINK 535 (546)
Q Consensus 478 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 535 (546)
.+..-+..|.+.|++.+|.+.--+.. |......+...+-..+....+.++-.
T Consensus 264 ~~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~~~~~~~~~~~i~~ 315 (319)
T PF04840_consen 264 PDEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCPGNNDQLIADKIEQ 315 (319)
T ss_pred ChHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCCCCChHHHHHHHHH
Confidence 22566888999999999988765543 55555555555433333333334433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00032 Score=53.17 Aligned_cols=75 Identities=17% Similarity=0.381 Sum_probs=43.7
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009011 450 MCCRKKRMKVLNFLLTHMFKNDV-SMDAGTYASLVRGLIES--------GKLELACSFFEEMISKGIVPYHSTYKMLEEK 520 (546)
Q Consensus 450 ~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 520 (546)
.|...+++.....+|+.+++.|+ .|+..+|+.++.+.++. ++.-+.+.+++.|+..+++|+..||+.++..
T Consensus 34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~ 113 (120)
T PF08579_consen 34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS 113 (120)
T ss_pred HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 33334444444445555544444 44455555544444332 2344567777888887888888888888877
Q ss_pred HHhc
Q 009011 521 LEKK 524 (546)
Q Consensus 521 ~~~~ 524 (546)
+.++
T Consensus 114 Llkg 117 (120)
T PF08579_consen 114 LLKG 117 (120)
T ss_pred HHHh
Confidence 7553
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00052 Score=51.82 Aligned_cols=90 Identities=18% Similarity=0.196 Sum_probs=40.5
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 009011 203 IMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKV 282 (546)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 282 (546)
+...+...|++++|+..+++..+.. +.+...+..+..++...+++++|.+.++......+.+..++..+...+...|+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 3344444455555555555444321 222233344444444444444444444444433333334444444555555555
Q ss_pred HHHHHHHHHHH
Q 009011 283 DDAQKAMKEMF 293 (546)
Q Consensus 283 ~~a~~~~~~m~ 293 (546)
++|...+....
T Consensus 85 ~~a~~~~~~~~ 95 (100)
T cd00189 85 EEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHH
Confidence 55555444443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00059 Score=51.76 Aligned_cols=74 Identities=26% Similarity=0.386 Sum_probs=34.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009011 378 IFILSKAGRVKDANEIFEDMKKQGV-VPNVLTYNTMISSACARS--------EEENALKLLQKMEEDLCKPDCETYAPLL 448 (546)
Q Consensus 378 i~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~ll 448 (546)
|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. +.-+++.+|+.|...+++|+..||+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333344555555555555555555 555555555555544321 1223344444444444444444444444
Q ss_pred HHH
Q 009011 449 KMC 451 (546)
Q Consensus 449 ~~~ 451 (546)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0013 Score=52.53 Aligned_cols=104 Identities=18% Similarity=0.079 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC--CCCHHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNG-YVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGV--EKDTRALSVLM 239 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ll 239 (546)
++-.+...+.+.|++++|.+.|+.+.+..+. +.....+..+...+.+.|++++|...|+.+..... +.....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3344555555555555565555555542211 11133444455555555555555555555543210 11123344444
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCH
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSS 266 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 266 (546)
.++.+.|+.++|.+.++++....|.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 444555555555555555444444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.056 Score=52.87 Aligned_cols=176 Identities=12% Similarity=0.144 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 352 INEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVP-NVLTYNTMISSACARSEEENALKLLQ 430 (546)
Q Consensus 352 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 430 (546)
.+....+++++...-..--..+|-..++.-.+..-++.|..+|.+..+.+..+ ++..+++++.-+|. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 55666677776654333334567778888888888999999999999887777 77888899987775 68899999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC--
Q 009011 431 KMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMD--AGTYASLVRGLIESGKLELACSFFEEMISKG-- 506 (546)
Q Consensus 431 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-- 506 (546)
--.+. ..-++..-...+.-+...++-..+..+|++....+..+| ..+|..++.-=..-|+...+.++-+++...-
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 75543 123344456677788899999999999999999855544 4789999999999999999999988876541
Q ss_pred -CCCCHHHHHHHHHHHHhcChhhH
Q 009011 507 -IVPYHSTYKMLEEKLEKKRLGNA 529 (546)
Q Consensus 507 -~~p~~~~~~~l~~~~~~~g~~~~ 529 (546)
..+...+-..+++.|.-.+....
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccccc
Confidence 22222233344555544444333
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00086 Score=62.57 Aligned_cols=129 Identities=13% Similarity=0.111 Sum_probs=68.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVR-GGRYDDAVEAFRGMKKYGVEKDTRALSVLMDT 241 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 241 (546)
+|-.++...-+.+..+.|+++|.+..+ . ...+...|-.....-.+ .++.+.|..+|+...+. +..+...+..-++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~-~-~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK-D-KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-C-CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 455566666666666666666666654 2 33344444444444222 34455566666665543 34455555555566
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSS---QIFNILIHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (546)
+.+.|+.+.|..+|++....++.+. .+|...+..=.+.|+++.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666555433332 3555555555555666655555555554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.02 Score=52.01 Aligned_cols=59 Identities=5% Similarity=-0.029 Sum_probs=38.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHhhhC
Q 009011 166 TMVDVLGKSKKFCLMWELVKEMDELNNGYVSLAT---MSTIMRRLVRGGRYDDAVEAFRGMKKY 226 (546)
Q Consensus 166 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (546)
.....+...|++++|.+.|+++.... +.+... .-.+..++.+.+++++|+..|++..+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34555566788888888888877632 222222 245566777788888888888877664
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.67 E-value=5.2e-05 Score=43.87 Aligned_cols=26 Identities=31% Similarity=0.717 Sum_probs=10.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 009011 304 YTCFIEHYCREKDFRKVDDTLKEMQE 329 (546)
Q Consensus 304 ~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (546)
|+.+|++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 33333333333333333333333333
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0023 Score=50.99 Aligned_cols=98 Identities=16% Similarity=0.166 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCC---CHHHHHHHH
Q 009011 199 TMSTIMRRLVRGGRYDDAVEAFRGMKKYGV--EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPL---SSQIFNILI 273 (546)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~li 273 (546)
++..+...+.+.|++++|.+.|+.+.+... ......+..+..++.+.|+++.|.+.++.+....|. ...++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445556666667777777777777654321 111234455566666666666666666665543222 234455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC
Q 009011 274 HGWCKTRKVDDAQKAMKEMFQQG 296 (546)
Q Consensus 274 ~~~~~~g~~~~a~~~~~~m~~~g 296 (546)
.++.+.|+.++|...++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 66666666666666666666553
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.63 E-value=7.5e-05 Score=43.19 Aligned_cols=30 Identities=43% Similarity=0.725 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 009011 478 TYASLVRGLIESGKLELACSFFEEMISKGI 507 (546)
Q Consensus 478 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 507 (546)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 567777777777777777777777776653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0011 Score=49.98 Aligned_cols=95 Identities=13% Similarity=0.094 Sum_probs=78.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTL 242 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 242 (546)
++..+...+...|++++|.+.++++.+ . .+.+...+..+...+...|++++|.+.|+...+.. +.+..++..+...+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 78 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALE-L-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHh-c-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHH
Confidence 355677888889999999999999987 3 44556788888999999999999999999988754 45556788888889
Q ss_pred HccCCHHHHHHHHHHhhc
Q 009011 243 VKGNSVEHAYKVFLEFKD 260 (546)
Q Consensus 243 ~~~g~~~~a~~~~~~~~~ 260 (546)
...|+.+.|...+.....
T Consensus 79 ~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 79 YKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHhHHHHHHHHHHHHc
Confidence 999999999999887754
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0022 Score=55.13 Aligned_cols=102 Identities=23% Similarity=0.271 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 009011 404 PNVLTYNTMISSACA-----RSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGT 478 (546)
Q Consensus 404 p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 478 (546)
.+..+|..++..|.+ .|..+=....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+.-
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~--------- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM--------- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc---------
Confidence 466777777777654 35566666667777777777777777777766543 2211 0111111110
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009011 479 YASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKK 524 (546)
Q Consensus 479 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 524 (546)
-| -.+.+-|++++++|...|+.||..|+..+++.+.+.
T Consensus 114 ------hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 114 ------HY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred ------cC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 00 123345666666666666666666666666666443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0052 Score=52.82 Aligned_cols=91 Identities=11% Similarity=0.081 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 009011 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKD--TRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILI 273 (546)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 273 (546)
....+..+...+...|++++|+..|++..+.+..+. ...+..+..++.+.|++++|...+.+.....|.+...+..+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 344566666677777777777777777765332221 345666666777777777777777776665566666666677
Q ss_pred HHHHhcCCHHHHH
Q 009011 274 HGWCKTRKVDDAQ 286 (546)
Q Consensus 274 ~~~~~~g~~~~a~ 286 (546)
..+...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 7777766654444
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.001 Score=57.16 Aligned_cols=86 Identities=19% Similarity=0.288 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------------ChhHHHH
Q 009011 264 LSSQIFNILIHGWCKT-----RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK----------------DFRKVDD 322 (546)
Q Consensus 264 ~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----------------~~~~a~~ 322 (546)
.+..+|..+++.|.+. |.++-....+..|.+-|+.-|..+|+.|++.+=+.. +.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 3555566666666543 566777777777888888888888888877665421 2233444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009011 323 TLKEMQEKGCKPSVITYTIVMHALGKA 349 (546)
Q Consensus 323 l~~~m~~~g~~p~~~~~~~li~~~~~~ 349 (546)
++++|...|+.||..++..+++.+++.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 444444444444444444444444433
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0014 Score=61.12 Aligned_cols=130 Identities=15% Similarity=0.140 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 009011 199 TMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDT-LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWC 277 (546)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 277 (546)
+|..+++...+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+.++.+...|...++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 46666777777777888888888887543 2333444333333 333466666888888877777888888888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009011 278 KTRKVDDAQKAMKEMFQQGFSPD---VVSYTCFIEHYCREKDFRKVDDTLKEMQEK 330 (546)
Q Consensus 278 ~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 330 (546)
+.|+.+.|..+|++.... +.++ ...|...++.=.+.|+.+.+.++.+.+.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888765 2222 247777777777778888887777777764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.027 Score=53.15 Aligned_cols=273 Identities=11% Similarity=0.032 Sum_probs=133.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccC
Q 009011 167 MVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGN 246 (546)
Q Consensus 167 ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 246 (546)
.-..+-+..++..|+..+....+ - .+.+...|..-...+...|++++|+--.+.-.+.. +.........-.++...+
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~-~-~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAID-M-CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALS 131 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHH-h-CccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhH
Confidence 34455556666666666666655 2 44445555555555555666666555444433211 111223333333444444
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHH-HHHHhcCChhHHHHHH
Q 009011 247 SVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQG-FSPDVVSYTCFI-EHYCREKDFRKVDDTL 324 (546)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li-~~~~~~g~~~~a~~l~ 324 (546)
+..+|.+.++ +...+ ....++..++...... -+|...+|..+- .++.-.|+.++|.+.-
T Consensus 132 ~~i~A~~~~~--------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 132 DLIEAEEKLK--------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHHhh--------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 4444444443 11111 1112222222222221 123334444332 3455667777777766
Q ss_pred HHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---HHH----------HHHhcCCHHH
Q 009011 325 KEMQEKGCKPSVITYTIVMHA--LGKAKQINEALKVYEKMKSDDCLPDTSFYSS---LIF----------ILSKAGRVKD 389 (546)
Q Consensus 325 ~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---li~----------~~~~~g~~~~ 389 (546)
-...+.... + .+..++++ +--.++.+.+...|.+....+ |+-..--. ... -..+.|++.+
T Consensus 193 ~~ilkld~~-n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 193 IDILKLDAT-N--AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK 267 (486)
T ss_pred HHHHhcccc-h--hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence 666554311 2 33333333 334567777777777776654 33322211 111 1235667777
Q ss_pred HHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCChHHHHHH
Q 009011 390 ANEIFEDMKKQ---GVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCET---YAPLLKMCCRKKRMKVLNFL 463 (546)
Q Consensus 390 A~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~g~~~~a~~~ 463 (546)
|.+.|.+.+.. +..++...|.....+..+.|+..+|+.--++..+. |... |..-..++...+++++|.+-
T Consensus 268 A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d 343 (486)
T KOG0550|consen 268 AYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVED 343 (486)
T ss_pred HHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776643 22334445555555666677777777666665542 3222 22222344456666677666
Q ss_pred HHHHHhC
Q 009011 464 LTHMFKN 470 (546)
Q Consensus 464 ~~~m~~~ 470 (546)
++...+.
T Consensus 344 ~~~a~q~ 350 (486)
T KOG0550|consen 344 YEKAMQL 350 (486)
T ss_pred HHHHHhh
Confidence 6666553
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.003 Score=54.09 Aligned_cols=81 Identities=11% Similarity=0.066 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 009011 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEK--DTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIH 274 (546)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~ 274 (546)
...|..+...+...|++++|+..|++.......+ ...++..+..++...|+.++|...++......+.....++.+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4555666666667777777777777775432111 22356666666667777777777776665544545555555555
Q ss_pred HHH
Q 009011 275 GWC 277 (546)
Q Consensus 275 ~~~ 277 (546)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 555
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0047 Score=59.87 Aligned_cols=89 Identities=10% Similarity=-0.041 Sum_probs=44.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 009011 380 ILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKV 459 (546)
Q Consensus 380 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 459 (546)
.+...|++++|.+.|+++.+.... +...|..+..+|...|++++|+..++++.+.. +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 344455555555555555543321 34444445555555555555555555555442 2234444445555555555555
Q ss_pred HHHHHHHHHhC
Q 009011 460 LNFLLTHMFKN 470 (546)
Q Consensus 460 a~~~~~~m~~~ 470 (546)
|...+++..+.
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 55555555543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.048 Score=49.63 Aligned_cols=53 Identities=13% Similarity=0.001 Sum_probs=22.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 378 IFILSKAGRVKDANEIFEDMKKQ--GVVPNVLTYNTMISSACARSEEENALKLLQ 430 (546)
Q Consensus 378 i~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 430 (546)
...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.+...
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34444555555555444444432 111122233344444545555555444443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0024 Score=57.49 Aligned_cols=98 Identities=14% Similarity=0.054 Sum_probs=69.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 009011 380 ILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKV 459 (546)
Q Consensus 380 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 459 (546)
-+.+.+++++|+..|.+.++... -|.+-|..-..+|++.|.++.|++-.+..+..+ +-...+|..|-.+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 35577888888888888887542 256666667778888888888888777777643 2224678888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHH
Q 009011 460 LNFLLTHMFKNDVSMDAGTYAS 481 (546)
Q Consensus 460 a~~~~~~m~~~~~~~~~~~~~~ 481 (546)
|.+.|++..+. .|+-.+|-.
T Consensus 168 A~~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKS 187 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHH
Confidence 88888877764 344444443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0097 Score=47.05 Aligned_cols=106 Identities=19% Similarity=0.197 Sum_probs=69.5
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHH
Q 009011 203 IMRRLVRGGRYDDAVEAFRGMKKYGVEKD--TRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPL---SSQIFNILIHGWC 277 (546)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~ 277 (546)
+...+-..|+.++|+.+|++....|.... ...+..+...+...|+.++|..++++.....|. +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34556677888888888888887775443 335556666777788888888888777665554 4444444555677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 278 KTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYC 312 (546)
Q Consensus 278 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 312 (546)
..|+.++|...+-.... ++...|.--|..|.
T Consensus 87 ~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 77888888777766554 24445555555544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0062 Score=59.02 Aligned_cols=90 Identities=9% Similarity=0.003 Sum_probs=53.1
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 009011 205 RRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDD 284 (546)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 284 (546)
..+...|++++|++.|++..+.. +.+...|..+..++...|++++|...++......|.+...|..+..+|...|++++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 33445566666666666665543 34455555555566666666666666666555555556666666666666666666
Q ss_pred HHHHHHHHHHC
Q 009011 285 AQKAMKEMFQQ 295 (546)
Q Consensus 285 a~~~~~~m~~~ 295 (546)
|...|++....
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 66666666554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0047 Score=50.70 Aligned_cols=92 Identities=13% Similarity=-0.005 Sum_probs=46.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 009011 202 TIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRK 281 (546)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 281 (546)
.+...+.+.|++++|..+|+.+.... +-+..-|-.|..++-..|++++|...|.....-.+.++..+..+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Confidence 33444445555555555555554432 22333334444444455555555555555444444555555555555555555
Q ss_pred HHHHHHHHHHHHH
Q 009011 282 VDDAQKAMKEMFQ 294 (546)
Q Consensus 282 ~~~a~~~~~~m~~ 294 (546)
.+.|.+.|+..+.
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00038 Score=51.60 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=6.5
Q ss_pred HHHHHhcCCHHHHHHHH
Q 009011 273 IHGWCKTRKVDDAQKAM 289 (546)
Q Consensus 273 i~~~~~~g~~~~a~~~~ 289 (546)
..++.+.|++++|+++|
T Consensus 65 a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 65 ARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp HHHHHHTT-HHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHH
Confidence 33344444444444433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0068 Score=49.80 Aligned_cols=90 Identities=13% Similarity=-0.032 Sum_probs=51.8
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009011 239 MDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFR 318 (546)
Q Consensus 239 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 318 (546)
...+...|++++|.++|+-+..-.|.+..-|..|..++-..|++++|...|.......+. |...+-.+-.++...|+.+
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHH
Confidence 334455566666666666555545555555666666666666666666666665555432 4555555555666666666
Q ss_pred HHHHHHHHHHH
Q 009011 319 KVDDTLKEMQE 329 (546)
Q Consensus 319 ~a~~l~~~m~~ 329 (546)
.|.+-|+..+.
T Consensus 121 ~A~~aF~~Ai~ 131 (157)
T PRK15363 121 YAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHH
Confidence 66665555443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.22 Score=50.89 Aligned_cols=111 Identities=14% Similarity=0.192 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 373 FYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCC 452 (546)
Q Consensus 373 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 452 (546)
+.+--+.-+...|+..+|.++-.+.+ -||-..|..-+.+++..+++++-+++-+.+. .+.-|..+..+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34445556677888888888877765 4788888888999999999988777665542 2567888899999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009011 453 RKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEM 502 (546)
Q Consensus 453 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 502 (546)
+.|+.++|.+++.+.... .-.+.+|.+.|++.+|.++--+-
T Consensus 756 ~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred hcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHHHh
Confidence 999999999888654321 15678889999999888765443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00053 Score=50.83 Aligned_cols=18 Identities=39% Similarity=0.446 Sum_probs=8.0
Q ss_pred HHHHHHcCChHHHHHHHH
Q 009011 483 VRGLIESGKLELACSFFE 500 (546)
Q Consensus 483 i~~~~~~g~~~~A~~~~~ 500 (546)
..++.+.|++++|++.|+
T Consensus 65 a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 65 ARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHh
Confidence 444444444444444444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0075 Score=51.59 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 372 SFYSSLIFILSKAGRVKDANEIFEDMKKQGVVP--NVLTYNTMISSACARSEEENALKLLQKMEED 435 (546)
Q Consensus 372 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 435 (546)
..+..+...+...|++++|...|+........+ ...+|..+...+...|++++|.+.+++..+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344445555555566666666666555432111 1234555555566666666666666665543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.043 Score=55.80 Aligned_cols=146 Identities=13% Similarity=0.075 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHHHhc--C---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 009011 368 LPDTSFYSSLIFILSKA--G---RVKDANEIFEDMKKQGVVPN-VLTYNTMISSACAR--------SEEENALKLLQKME 433 (546)
Q Consensus 368 ~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------g~~~~A~~~~~~m~ 433 (546)
+.+...|...+.+.... + ..++|.++|++..+.. |+ ...|..+..++... .+...+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34555565555553322 1 2456666666666543 33 22333322222211 11233333333333
Q ss_pred HC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 009011 434 ED-LCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHS 512 (546)
Q Consensus 434 ~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 512 (546)
.. ....+...|..+.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+++.... .|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCc
Confidence 22 123344666666555666788888888888887765 46677888888888888888888888887744 35555
Q ss_pred HHHHHHH
Q 009011 513 TYKMLEE 519 (546)
Q Consensus 513 ~~~~l~~ 519 (546)
||...-+
T Consensus 488 t~~~~~~ 494 (517)
T PRK10153 488 TLYWIEN 494 (517)
T ss_pred hHHHHHh
Confidence 5544333
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.082 Score=49.57 Aligned_cols=61 Identities=13% Similarity=0.173 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 339 YTIVMHALGKAKQINEALKVYEKMKSDDCL-----PDTS-FYSSLIFILSKAGRVKDANEIFEDMKK 399 (546)
Q Consensus 339 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~ 399 (546)
+..+...+.+.|++++|.++|+++...... .+.. .+-..+-++...|++..|.+.+++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555666666666666655543221 1111 111222234445556666666655543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.023 Score=48.80 Aligned_cols=84 Identities=12% Similarity=0.076 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009011 304 YTCFIEHYCREKDFRKVDDTLKEMQEKGCKPS--VITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFIL 381 (546)
Q Consensus 304 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 381 (546)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +-+...+..+...|
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 33334444444445555444444443321111 2344444555555555555555555554432 12333444444444
Q ss_pred HhcCCHH
Q 009011 382 SKAGRVK 388 (546)
Q Consensus 382 ~~~g~~~ 388 (546)
...|+..
T Consensus 117 ~~~g~~~ 123 (172)
T PRK02603 117 HKRGEKA 123 (172)
T ss_pred HHcCChH
Confidence 4444433
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.21 Score=48.04 Aligned_cols=114 Identities=16% Similarity=0.110 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHh---cCChHHHHHHHHHHHhCCCCC----CHHHHHHHHHH--HHH
Q 009011 422 EENALKLLQKMEEDLCKPDCETYAP----LLKMCCR---KKRMKVLNFLLTHMFKNDVSM----DAGTYASLVRG--LIE 488 (546)
Q Consensus 422 ~~~A~~~~~~m~~~~~~p~~~~~~~----ll~~~~~---~g~~~~a~~~~~~m~~~~~~~----~~~~~~~li~~--~~~ 488 (546)
-++|+.+++.+.+.. .-|...-+. +=.+|.+ ...+.+...+-+-+.+.|+.| +...-|.+.++ +..
T Consensus 396 dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 677777777776542 223222222 2222322 223444444444455566654 33455555544 467
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHH
Q 009011 489 SGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLA 538 (546)
Q Consensus 489 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 538 (546)
+|++.++.-.-.-+. .+.|++.+|..+--++....++++|..++..+-
T Consensus 475 qgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred cccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 899998876655555 477999999999888888999999999987763
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.052 Score=50.86 Aligned_cols=206 Identities=13% Similarity=0.141 Sum_probs=108.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhC---CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELN---NGY-VSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVL 238 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~---~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 238 (546)
.|......|-..|++++|.+.|....... ..+ .....|......|.+. ++++|++.+++.
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A--------------- 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA--------------- 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH---------------
Confidence 45556667777778887777777654311 010 1122233333333222 555555555444
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHH
Q 009011 239 MDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKT-RKVDDAQKAMKEMFQQ----GFSP-DVVSYTCFIEHYC 312 (546)
Q Consensus 239 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~ 312 (546)
+..|...|+...|-+.+.. +...|-.. |++++|.+.|++..+. |-.. -...+..+...+.
T Consensus 101 ~~~y~~~G~~~~aA~~~~~--------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE--------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH--------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHH--------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 3455666666665555433 34455555 6777777777765442 2100 1234556667788
Q ss_pred hcCChhHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHH
Q 009011 313 REKDFRKVDDTLKEMQEKGCK-----PSVI-TYTIVMHALGKAKQINEALKVYEKMKSDD--CLP--DTSFYSSLIFILS 382 (546)
Q Consensus 313 ~~g~~~~a~~l~~~m~~~g~~-----p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~~ 382 (546)
+.|++++|.++|+++...-.. .+.. .|...+-++...|++..|.+.+++..... +.. .......|+.+|-
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 888888888888887764321 1222 22333445566788888888888877553 221 2344555666654
Q ss_pred h--cCCHHHHHHHHHHHH
Q 009011 383 K--AGRVKDANEIFEDMK 398 (546)
Q Consensus 383 ~--~g~~~~A~~~~~~~~ 398 (546)
. ...++.|..-|+.+.
T Consensus 247 ~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS
T ss_pred hCCHHHHHHHHHHHcccC
Confidence 3 223555555555443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.16 Score=45.17 Aligned_cols=133 Identities=18% Similarity=0.120 Sum_probs=98.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHH---
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLM--- 239 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll--- 239 (546)
+-+.++..+.-.|.+.-..+++.+..++. .+.++.....+++.-.+.|+.+.|...|+...+..-..|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYY-PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34677778888888888888888888855 67788888888888889999999999998776543344444443332
Q ss_pred --HHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009011 240 --DTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQG 296 (546)
Q Consensus 240 --~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 296 (546)
..+.-.+++..|...+.++....+.++..-|.-.-+..-.|+..+|.+.++.|.+.-
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 335556777788888888877777777777777777777788888888888888763
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.22 Score=46.84 Aligned_cols=319 Identities=17% Similarity=0.176 Sum_probs=197.3
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--cCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-
Q 009011 130 VEQTLRRFSNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLG--KSKKFCLMWELVKEMDELNNGYVSLATMSTIMRR- 206 (546)
Q Consensus 130 ~~~~l~~~~~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~- 206 (546)
+-.+++.....+..+.+.|.-.+++.|| .+|-..+. -.|+-..|.++-.+-.+. ...+....-.++.+
T Consensus 58 lwwlv~~iw~sP~t~~Ryfr~rKRdrgy-------qALStGliAagAGda~lARkmt~~~~~l--lssDqepLIhlLeAQ 128 (531)
T COG3898 58 LWWLVRSIWESPYTARRYFRERKRDRGY-------QALSTGLIAAGAGDASLARKMTARASKL--LSSDQEPLIHLLEAQ 128 (531)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHhhhHH-------HHHhhhhhhhccCchHHHHHHHHHHHhh--hhccchHHHHHHHHH
Confidence 3445555666777788888888777665 45554444 457888888877766531 22333333333333
Q ss_pred -HHhcCChHHHHHHHHHhhhCCCCCCHHH--HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 207 -LVRGGRYDDAVEAFRGMKKYGVEKDTRA--LSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVD 283 (546)
Q Consensus 207 -~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 283 (546)
-.-.|++++|.+-|+.|.. .|.... +..|.-..-+.|+.+.|...-+.....-|.-...+.+.+...|..|+++
T Consensus 129 aal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 129 AALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred HHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChH
Confidence 3346999999999999975 232222 2333333456788998888888877767777788999999999999999
Q ss_pred HHHHHHHHHHHCC-CCCCHH--HHHHHHHHHH---hcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 009011 284 DAQKAMKEMFQQG-FSPDVV--SYTCFIEHYC---REKDFRKVDDTLKEMQEKGCKPSVI-TYTIVMHALGKAKQINEAL 356 (546)
Q Consensus 284 ~a~~~~~~m~~~g-~~~~~~--~~~~li~~~~---~~g~~~~a~~l~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~ 356 (546)
.|+++++.-.... +.++.. .-..|+.+-. -..+...|...-.+..+ ..||-. .-.....++.+.|+..++-
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhh
Confidence 9999998876542 333432 1222222211 12344455544444333 344432 2223456788899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 357 KVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ-GVVP-NVLTYNTMISSACARSEEENALKLLQKMEE 434 (546)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 434 (546)
.+++.+=+....|+ .. .+..+.+.|+. +.+-++...+. .++| +....-.+..+....|++..|..--+....
T Consensus 284 ~ilE~aWK~ePHP~--ia--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 284 KILETAWKAEPHPD--IA--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred hHHHHHHhcCCChH--HH--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 99998888754444 32 22334455553 22222222210 1122 455666677777788888887776666555
Q ss_pred CCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHhC
Q 009011 435 DLCKPDCETYAPLLKMCCR-KKRMKVLNFLLTHMFKN 470 (546)
Q Consensus 435 ~~~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~m~~~ 470 (546)
. .|....|..|...-.. .|+-.++...+.+..+.
T Consensus 358 ~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 358 E--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred h--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 3 6777788777765544 48888888888887764
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.27 Score=47.18 Aligned_cols=130 Identities=13% Similarity=0.103 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 009011 407 LTYNTMISSACARSEEENALKLLQKMEEDL-CKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTY-ASLVR 484 (546)
Q Consensus 407 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~li~ 484 (546)
..|.+.+....+....+.|..+|-+..+.+ +.+++..+++++..++ .|+...|..+|+--... -||...| +..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456777777777778888899998888887 5677778888887654 57777888888765553 2344443 56677
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcChhhHHHHHHHHHHHH
Q 009011 485 GLIESGKLELACSFFEEMISKGIVPY--HSTYKMLEEKLEKKRLGNAKERINKLLAHA 540 (546)
Q Consensus 485 ~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 540 (546)
-+...|+-+.|..+|+..+++ +.-+ ..+|..++..=..-|+...+..+-++|...
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 778888888888888876654 2223 457777887777778887777777766543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.024 Score=51.33 Aligned_cols=96 Identities=16% Similarity=0.168 Sum_probs=55.3
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVD 321 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 321 (546)
+.+.+++++|...|.+...-.|.|.+.|..-..+|++.|.++.|++-.+..+..... -..+|..|-.+|...|++++|.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHHH
Confidence 445566666666666666555666666666666666666666666655555554211 2345566666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHH
Q 009011 322 DTLKEMQEKGCKPSVITYT 340 (546)
Q Consensus 322 ~l~~~m~~~g~~p~~~~~~ 340 (546)
+.|+...+ +.|+..+|-
T Consensus 170 ~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHhhhc--cCCCcHHHH
Confidence 66655554 344444443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0014 Score=46.15 Aligned_cols=51 Identities=14% Similarity=0.220 Sum_probs=23.7
Q ss_pred cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 245 GNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 245 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
.|++++|.+.|+.+....|.+..++..+..+|.+.|++++|..+++++...
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444444444444444444444444445555555555555444444443
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.073 Score=54.17 Aligned_cols=66 Identities=14% Similarity=0.061 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009011 405 NVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDV 472 (546)
Q Consensus 405 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 472 (546)
+...|.++.......|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+++....++
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 44555555444555566777777776666653 5666666666666667777777776666665443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.047 Score=49.67 Aligned_cols=101 Identities=12% Similarity=0.048 Sum_probs=77.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCCHHHHH
Q 009011 404 PNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKK---RMKVLNFLLTHMFKNDVSMDAGTYA 480 (546)
Q Consensus 404 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~ 480 (546)
-|...|-.|...|...|+.+.|..-|.+..+.. .++...+..+..++.... .-.++..+++++.+.+.. |.....
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 377888888888888888888888888887753 445566666665554433 356788888888887765 778888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC
Q 009011 481 SLVRGLIESGKLELACSFFEEMISKG 506 (546)
Q Consensus 481 ~li~~~~~~g~~~~A~~~~~~m~~~g 506 (546)
.|...+...|++.+|...|+.|.+..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 88888888999999999999998764
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0024 Score=44.98 Aligned_cols=52 Identities=17% Similarity=0.205 Sum_probs=28.9
Q ss_pred cCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 009011 173 KSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY 226 (546)
Q Consensus 173 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (546)
+.|++++|+++|+.+.. . .|.+...+..+...|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ-R-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHH-H-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHH-H-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45556666666666555 2 3445555555566666666666666666655543
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.012 Score=55.34 Aligned_cols=132 Identities=9% Similarity=-0.066 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCHH
Q 009011 338 TYTIVMHALGKAKQINEALKVYEKMK----SDDCL-PDTSFYSSLIFILSKAGRVKDANEIFEDMKK----QGV-VPNVL 407 (546)
Q Consensus 338 ~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~~ 407 (546)
.|..+...|.-.|+++.|+...+.-. +.|-. .....+..+.+++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34555555566778888876655432 22311 2345667777888888888888887775432 221 12234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009011 408 TYNTMISSACARSEEENALKLLQKMEED----L-CKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 408 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 469 (546)
+..+|...|.-..++++|+.++.+-... + .--....++.|..++...|..++|..+.+...+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4555667777777788888777654321 1 122346788888888888888888877766554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.35 Score=45.99 Aligned_cols=154 Identities=12% Similarity=0.093 Sum_probs=94.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCChhHHHHHHHHHHHcCCCCCHHHHH---HHHHH--
Q 009011 273 IHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIE--HYCREKDFRKVDDTLKEMQEKGCKPSVITYT---IVMHA-- 345 (546)
Q Consensus 273 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~--~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~---~li~~-- 345 (546)
..++.-.|+.++|..+--...+.. ....+...++ ++.-.++.+.+...|++.+..+ |+...-. ...+.
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHH
Confidence 345566788888887777666542 1222333333 3334567788888887776653 3332222 12222
Q ss_pred --------HHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHH
Q 009011 346 --------LGKAKQINEALKVYEKMKSDD---CLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLT---YNT 411 (546)
Q Consensus 346 --------~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~ 411 (546)
..+.|++.+|.+.|.+.+... ..++...|........+.|+.++|+.--+...+. |..- |..
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ 326 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLR 326 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHH
Confidence 346788888888888877643 3355666666666777888888888887777753 3332 222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 412 MISSACARSEEENALKLLQKMEED 435 (546)
Q Consensus 412 li~~~~~~g~~~~A~~~~~~m~~~ 435 (546)
-..++...+++++|.+-+++..+.
T Consensus 327 ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 327 RANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 233455567888888888877665
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.068 Score=42.29 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=7.1
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 009011 345 ALGKAKQINEALKVYEKM 362 (546)
Q Consensus 345 ~~~~~g~~~~a~~~~~~~ 362 (546)
.+...|++++|..++++.
T Consensus 47 tlr~LG~~deA~~~L~~~ 64 (120)
T PF12688_consen 47 TLRNLGRYDEALALLEEA 64 (120)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 333334444444444333
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.11 Score=45.84 Aligned_cols=60 Identities=10% Similarity=0.094 Sum_probs=36.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 009011 166 TMVDVLGKSKKFCLMWELVKEMDELNNG-YVSLATMSTIMRRLVRGGRYDDAVEAFRGMKK 225 (546)
Q Consensus 166 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (546)
.....+...|++++|.+.|+.+....+. +....+.-.++.++.+.|++++|...|++..+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555677777777777777664322 23345555667777777777777777777655
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.65 Score=47.16 Aligned_cols=128 Identities=11% Similarity=0.031 Sum_probs=64.9
Q ss_pred CCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHccCCHHHHH
Q 009011 174 SKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY-GVEKDTRALSVLMDTLVKGNSVEHAY 252 (546)
Q Consensus 174 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~ 252 (546)
-|++++|.+++-+|.++. ..|..+.+.|++-.+.++++.--.. .-+.-..+++.+...+.....+++|.
T Consensus 747 ~g~feeaek~yld~drrD----------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~ 816 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD----------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAA 816 (1189)
T ss_pred hcchhHhhhhhhccchhh----------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888887776532 2255566667776666665442100 00111345566666666666666666
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 009011 253 KVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTL 324 (546)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~ 324 (546)
+.|..-.. ....+.++.+..++++-+.+...+.+ +....-.+.+++...|.-++|.+.+
T Consensus 817 ~yY~~~~~--------~e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 817 KYYSYCGD--------TENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHhccc--------hHhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHH
Confidence 66644321 12234444444444444444443332 2333334444555555555554433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.16 Score=44.95 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=36.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC
Q 009011 202 TIMRRLVRGGRYDDAVEAFRGMKKYGV--EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLS 265 (546)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 265 (546)
.....+.+.|++.+|++.|+.+...-. +--....-.+..++-+.|+.+.|...++.+....|.+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 344556677778888888877765311 1223344555666777777777777777766654443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.006 Score=42.47 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=26.5
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 241 TLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 241 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (546)
.+.+.|++++|.+.|+.+....|.+...+..+..++...|++++|...|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555555444444455555555555555555555555555443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.36 Score=42.98 Aligned_cols=134 Identities=14% Similarity=0.052 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--
Q 009011 372 SFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLK-- 449 (546)
Q Consensus 372 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~-- 449 (546)
.+.+.++.++.-.|.+.-..+++.+.++...+.++.....+.+.-.+.|+.+.|...|++..+..-+.|..+++.++.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345566666777777888888888888876666777788888888888888888888887766544555555554443
Q ss_pred ---HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009011 450 ---MCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKG 506 (546)
Q Consensus 450 ---~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 506 (546)
.+.-.+++..|...+.++...+.. |....|.-.-++.-.|+..+|++.++.|++.-
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 344566777777778777776554 55555555555555788889999999888653
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0059 Score=42.52 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=33.6
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 009011 168 VDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKK 225 (546)
Q Consensus 168 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (546)
...+.+.|++++|.+.|+++.+ . .+.+...+..+...+.+.|++++|+..|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~-~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALK-Q-DPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHC-C-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH-H-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455566666666666666665 3 444566666666666666666666666666654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.039 Score=50.68 Aligned_cols=105 Identities=12% Similarity=0.028 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC--CCCCHHHHHHH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNG-YVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYG--VEKDTRALSVL 238 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~l 238 (546)
..|..-+..+.+.|++++|...|+.+.+..+. .....++..+...|...|++++|+..|+.+.+.- -+.....+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555555556667777777777777663211 1124566667777777777777777777775431 11123334444
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCH
Q 009011 239 MDTLVKGNSVEHAYKVFLEFKDCIPLSS 266 (546)
Q Consensus 239 l~~~~~~g~~~~a~~~~~~~~~~~~~~~ 266 (546)
..++...|+.++|.++|+.+....|.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 5555566666666666666665555443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.088 Score=47.97 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHhhcCCCCCHHHH
Q 009011 193 GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVK---GNSVEHAYKVFLEFKDCIPLSSQIF 269 (546)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~ 269 (546)
+|-+...|-.|...|...|+++.|...|....+.. .++...+..+..++.. ..+..++..+|+++....+.++...
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 45555566666666666666666666666555432 3334444333333322 1234455555555555555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 270 NILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 270 ~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55555555566666666655555554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.33 Score=48.75 Aligned_cols=56 Identities=20% Similarity=0.153 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 370 DTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEE 434 (546)
Q Consensus 370 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 434 (546)
+..+...+...+.+...+.-|-++|..|-. ...+++.....+++++|..+-+...+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence 334444455555566667777777777632 12355666677888888887776654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.56 Score=44.49 Aligned_cols=277 Identities=17% Similarity=0.182 Sum_probs=152.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 009011 200 MSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKT 279 (546)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 279 (546)
|..+...-.+.|+.+-|..+++. +|+..-= +..+.+.|+.+.|.. +.+..+ .+| -+|..|+..--+.
T Consensus 3 ~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~~q---VplLL~m~e~e~AL~--kAi~Sg-D~D-Li~~vLl~L~~~l 69 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKLLEL------EPRASKQ---VPLLLKMGEDELALN--KAIESG-DTD-LIYLVLLHLKRKL 69 (319)
T ss_pred HHHHHHHHHHcChHHHHHHHHHc------CCChHHH---HHHHhcCCchHHHHH--HHHHcC-Ccc-HHHHHHHHHHHhC
Confidence 55667777788999988887754 4444322 344566777776632 222222 222 3455666544433
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 280 RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVY 359 (546)
Q Consensus 280 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 359 (546)
. .. +++ .+... .|.. ..+...|++..+.+...++|.+-.+. .......+-.++.. .+.+.-...+
T Consensus 70 ~-~s---~f~-~il~~--~p~a---~~l~~~~~r~~~~~~L~~~y~q~d~~----~~~a~~~l~~~~~~-~~~~~~~~~L 134 (319)
T PF04840_consen 70 S-LS---QFF-KILNQ--NPVA---SNLYKKYCREQDRELLKDFYYQEDRF----QELANLHLQEALSQ-KDVEEKISFL 134 (319)
T ss_pred C-HH---HHH-HHHHh--Ccch---HHHHHHHHHhccHHHHHHHHHhcchH----HHHHHHHHHHHHhC-CChHHHHHHH
Confidence 2 11 233 33322 1222 33455677777777766666542211 11122222233322 3444333333
Q ss_pred HHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH---HHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 360 EKMKSDDC-LPDTSFYSSLIFILSKAGRVKDANEIFED---MKK-QGVVPNVLTYNTMISSACARSEEENALKLLQKMEE 434 (546)
Q Consensus 360 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 434 (546)
....+.-- ..+......++. +..++++. +.+ .+......+.+..|.-+...|+...|.++-.+..
T Consensus 135 ~~a~~~y~~~k~~~f~~~~~e---------~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk- 204 (319)
T PF04840_consen 135 KQAQKLYSKSKNDAFEAKLIE---------EQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEFK- 204 (319)
T ss_pred HHHHHHHHhcchhHHHHHHHH---------HHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHcC-
Confidence 33322100 011122222222 22222221 111 1111122345566777788899998888876652
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 009011 435 DLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTY 514 (546)
Q Consensus 435 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 514 (546)
-|+..-|...+.+++..++|++...+-.. +-.+.-|...+.+|.+.|...+|..++..+. +
T Consensus 205 ---v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k~~------~---- 265 (319)
T PF04840_consen 205 ---VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPKIP------D---- 265 (319)
T ss_pred ---CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHhCC------h----
Confidence 47889999999999999999998876542 1245789999999999999999999988731 2
Q ss_pred HHHHHHHHhcChhhHHHHH
Q 009011 515 KMLEEKLEKKRLGNAKERI 533 (546)
Q Consensus 515 ~~l~~~~~~~g~~~~a~~~ 533 (546)
..-+..|.+.|++.+|.+.
T Consensus 266 ~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 266 EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHCCCHHHHHHH
Confidence 3345556666666666544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.33 Score=40.90 Aligned_cols=130 Identities=12% Similarity=0.143 Sum_probs=79.2
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHH
Q 009011 229 EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDC-IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQG---FSPDVVSY 304 (546)
Q Consensus 229 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~ 304 (546)
-|+..--..|..++.+.|+..+|...|++...+ +..|....-.+.++....+++.+|...++++.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 455555566666777777777777777666654 55566666667777777777777777777766542 2233 23
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 305 TCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKM 362 (546)
Q Consensus 305 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 362 (546)
-.+...|...|.+.+|+.-|+..... -|+...-......+.+.|+.+++..-+..+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 34456666777777777777777664 334333333444556666655554444333
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=1 Score=45.93 Aligned_cols=342 Identities=12% Similarity=0.087 Sum_probs=177.8
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCC--------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC
Q 009011 159 HTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNN--------GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEK 230 (546)
Q Consensus 159 ~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 230 (546)
|-+..|..|...-...-.++.|...|-+...-.+ ...+...-.+-+.+| -|++++|.++|-+|.++.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh---
Confidence 5556666666555555555555555544432110 001111111223333 489999999998886543
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009011 231 DTRALSVLMDTLVKGNSVEHAYKVFLEFKDC--IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFI 308 (546)
Q Consensus 231 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 308 (546)
..+..+.+.|++-...++++.-..+ ...-...|+.+...+.....|++|.+.+..-... ...+
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ 829 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQI 829 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHH
Confidence 2455667788888777776543221 1222457899999999999999999988765421 2356
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 309 EHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVK 388 (546)
Q Consensus 309 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 388 (546)
.++.+..++++.+.+.+.+.+ +....-.+.+++.+.|.-++|.+.|-+... | .+.+..|...+++.
T Consensus 830 ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~ 895 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWG 895 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHH
Confidence 777777777777666555433 344555666677777777776665543211 1 12334455555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHH--HH--HH
Q 009011 389 DANEIFEDMKKQGVVPNVLTY--------------NTMISSACARSEEENALKLLQKMEED----LCKPDCE--TY--AP 446 (546)
Q Consensus 389 ~A~~~~~~~~~~~~~p~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~--~~--~~ 446 (546)
+|.++-+...- |.+.+. ---|..+.+.|+.-.|.+++.+|.+. +.++-.. .| .+
T Consensus 896 ~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~A 971 (1189)
T KOG2041|consen 896 EAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGA 971 (1189)
T ss_pred HHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHH
Confidence 55555443221 111111 11233455566665666666555432 2222211 11 11
Q ss_pred HH-HHH----------HhcCChHHHHHHHHHHHh-------CCCCCCHHHHHHHHHH--HHHcCChHHHHHHHHHHHHC-
Q 009011 447 LL-KMC----------CRKKRMKVLNFLLTHMFK-------NDVSMDAGTYASLVRG--LIESGKLELACSFFEEMISK- 505 (546)
Q Consensus 447 ll-~~~----------~~~g~~~~a~~~~~~m~~-------~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~- 505 (546)
++ .-+ -+.|..++|..+++...- .+.-.-...|..+|-+ -...|.++.|++.--.+.+.
T Consensus 972 lLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYE 1051 (1189)
T KOG2041|consen 972 LLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYE 1051 (1189)
T ss_pred HHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHh
Confidence 11 111 123444444443332211 0011123444444433 45568888877765554443
Q ss_pred CCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHH
Q 009011 506 GIVPYHSTYKMLEEKLEKKRLGNAKERINKLLA 538 (546)
Q Consensus 506 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 538 (546)
.+-|...+|..+.-+-+..+.+..--+.|-.+.
T Consensus 1052 d~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1052 DFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred hcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 466777777776555555555544444444443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.009 Score=42.13 Aligned_cols=26 Identities=8% Similarity=0.127 Sum_probs=10.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 269 FNILIHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (546)
|..+...+...|++++|+..|++..+
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~ 31 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIE 31 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333333333333333333333333
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.03 Score=46.51 Aligned_cols=72 Identities=22% Similarity=0.209 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 009011 443 TYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMIS-----KGIVPYHSTYK 515 (546)
Q Consensus 443 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 515 (546)
+...++..+...|+++.|..+.+.+....+- |...|..+|.+|...|+..+|.+.|+++.. .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 3445555666777777777777777776554 677777888888888888888777776643 37777776643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.066 Score=42.80 Aligned_cols=98 Identities=8% Similarity=-0.014 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009011 405 NVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVR 484 (546)
Q Consensus 405 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 484 (546)
|..++..+|.++++.|+.+....+++..-. +.++... ..+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 345666667777777777766666655422 1111100 0000 0112345678888888888
Q ss_pred HHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 009011 485 GLIESGKLELACSFFEEMISK-GIVPYHSTYKMLEEKLE 522 (546)
Q Consensus 485 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~ 522 (546)
+|+..|++..|+++++...+. +++.+..+|..|++-..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 888888888888888887765 67777788888777543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.81 Score=43.31 Aligned_cols=279 Identities=13% Similarity=0.079 Sum_probs=131.8
Q ss_pred cCCHHHHHHHHHHhhcCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChhHH
Q 009011 245 GNSVEHAYKVFLEFKDCIPLSSQIFNILI--HGWCKTRKVDDAQKAMKEMFQQGFSPDVVS--YTCFIEHYCREKDFRKV 320 (546)
Q Consensus 245 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~a 320 (546)
.|+-..|.++-.+..+.+..|....-.|+ +.-.-.|+.+.|.+-|+.|... |.... ...|.-...+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 45555555555444333333322222222 2233456677777777776642 22111 11122223355666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHH--HHHHHHHH---hcCCHHHHHHHH
Q 009011 321 DDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDC-LPDTSFY--SSLIFILS---KAGRVKDANEIF 394 (546)
Q Consensus 321 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~--~~li~~~~---~~g~~~~A~~~~ 394 (546)
..+-+..-..-.. -.......+...|..|+++.|+++++.-....+ .++..-- ..|+.+-. -..+...|.+.-
T Consensus 174 r~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 6666555443211 234555666666777777777777665544321 2222111 11111111 112344455444
Q ss_pred HHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCC
Q 009011 395 EDMKKQGVVPNVLTYN-TMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK-NDV 472 (546)
Q Consensus 395 ~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~ 472 (546)
.+..+ +.||...-. .-..++.+.|+..++-.+++.+-+.. |.+......+ +.+.|+ .+..-++...+ ...
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY~--~ar~gd--ta~dRlkRa~~L~sl 324 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLYV--RARSGD--TALDRLKRAKKLESL 324 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHHH--HhcCCC--cHHHHHHHHHHHHhc
Confidence 44433 234433222 22345667777777777777776653 3333332221 233333 22222222222 111
Q ss_pred C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-ChhhHHHHHHHHH
Q 009011 473 S-MDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKK-RLGNAKERINKLL 537 (546)
Q Consensus 473 ~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~m 537 (546)
+ .+....-.+.++-...|++..|..--+... ...|....|..|.+.-... |+-.++...+.+-
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~--r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAA--REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHh--hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 1 244455555666666777776666555554 3446666666665554443 6666666555443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.016 Score=40.78 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=10.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 409 YNTMISSACARSEEENALKLLQKMEE 434 (546)
Q Consensus 409 ~~~li~~~~~~g~~~~A~~~~~~m~~ 434 (546)
|..+...+...|++++|+..|++..+
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~ 31 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIE 31 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333333333444444444433333
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.47 Score=39.99 Aligned_cols=126 Identities=17% Similarity=0.176 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCCCHHHHH
Q 009011 264 LSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKG---CKPSVITYT 340 (546)
Q Consensus 264 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g---~~p~~~~~~ 340 (546)
|++..-..|.....+.|+..+|...|.+....-+.-|....-.+.++....+++..|...++.+-+.. -.||. ..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hH
Confidence 45555556666666667777777766666554334455555555666666666666666666665542 23332 33
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009011 341 IVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEI 393 (546)
Q Consensus 341 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 393 (546)
.+...+...|.+.+|+.-|+.....- |+...-......+.+.|+.++|..-
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHH
Confidence 45566666666666666666666543 3333333333445566655554433
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.93 Score=43.55 Aligned_cols=31 Identities=10% Similarity=0.150 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 009011 195 VSLATMSTIMRRLVRGGRYDDAVEAFRGMKK 225 (546)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (546)
.+..+...++-+|....+++..+++.+.|..
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~ 169 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEA 169 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhc
Confidence 3444444555556666666666666666654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.088 Score=48.36 Aligned_cols=6 Identities=17% Similarity=0.506 Sum_probs=2.2
Q ss_pred HHHHHH
Q 009011 99 KISKIL 104 (546)
Q Consensus 99 ~~~~~l 104 (546)
.+.+++
T Consensus 44 ~le~~~ 49 (263)
T PRK10803 44 QLERIS 49 (263)
T ss_pred HHHHHH
Confidence 333333
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.42 Score=47.99 Aligned_cols=85 Identities=11% Similarity=0.007 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----------
Q 009011 443 TYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYH----------- 511 (546)
Q Consensus 443 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------- 511 (546)
+...+..-+.+...+..|.++|..|-+. ..+++.....+++++|..+-+...+. .|+.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence 3333333344455555566666555321 23445555566666666665554322 1221
Q ss_pred HHHHHHHHHHHhcChhhHHHHHHHHHH
Q 009011 512 STYKMLEEKLEKKRLGNAKERINKLLA 538 (546)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 538 (546)
.-|...-++|-+.|+..+|.++++++.
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 123344456666677777777666664
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.029 Score=40.01 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=36.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009011 449 KMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKG 506 (546)
Q Consensus 449 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 506 (546)
..|.+.++++.|.++++.+...++. +...|......+.+.|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3455666666666666666665544 55566666666666777777777776666543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.89 Score=43.68 Aligned_cols=187 Identities=14% Similarity=0.116 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCCHH
Q 009011 318 RKVDDTLKEMQEKGCKP---SVITYTIVMHALGKAKQINEALKVYEKMKSDD---CLPDTSFYSSLIFILSK---AGRVK 388 (546)
Q Consensus 318 ~~a~~l~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~ 388 (546)
++..+.+.+|...=..| +..+...++-+|....+++...++.+.+...- +.-...+-.....++.+ .|+.+
T Consensus 120 ~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre 199 (374)
T PF13281_consen 120 KELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDRE 199 (374)
T ss_pred HHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHH
Confidence 34444455555431112 23334456667999999999999999998752 11223333345556667 89999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-h-
Q 009011 389 DANEIFEDMKKQGVVPNVLTYNTMISSACA---------RSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKR-M- 457 (546)
Q Consensus 389 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-~- 457 (546)
+|.+++..+......++..+|..+...|-. ....++|...|.+.-+. .|+...--.+...+...|. .
T Consensus 200 ~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~ 277 (374)
T PF13281_consen 200 KALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFE 277 (374)
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCccc
Confidence 999999997666667888899988877632 12367788888776554 3554332222222223332 2
Q ss_pred --HHHHHHH---H-HHHhCCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009011 458 --KVLNFLL---T-HMFKNDV---SMDAGTYASLVRGLIESGKLELACSFFEEMISKG 506 (546)
Q Consensus 458 --~~a~~~~---~-~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 506 (546)
.+..++- . ...+.|. ..|.-.+.+++.+..-.|++++|.+..++|....
T Consensus 278 ~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 278 TSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred chHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2333333 1 1222332 2344455677888888999999999999998663
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.2 Score=49.81 Aligned_cols=129 Identities=19% Similarity=0.157 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 009011 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLV 243 (546)
Q Consensus 164 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 243 (546)
.+.++..+-+.|..+.|+.+-.+-.. . .....+.|+.+.|.++.++ ..+...|..|.+...
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~-r------------FeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDH-R------------FELALQLGNLDIALEIAKE------LDDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHH-H------------HHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHH-H------------hHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHH
Confidence 45666666666666666655443322 1 4444555666666555433 234556666666666
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009011 244 KGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDT 323 (546)
Q Consensus 244 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l 323 (546)
+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+.....|- ++....++.-.|+.++..++
T Consensus 359 ~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp HTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred HcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHH
Confidence 66666666666655543 55555556666666555555555444321 23333344444555555444
Q ss_pred HH
Q 009011 324 LK 325 (546)
Q Consensus 324 ~~ 325 (546)
+.
T Consensus 425 L~ 426 (443)
T PF04053_consen 425 LI 426 (443)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.026 Score=46.88 Aligned_cols=53 Identities=11% Similarity=0.276 Sum_probs=23.7
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEM 292 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 292 (546)
..+...|+.++|..+...+....|.+...|..+|.+|...|+..+|.++|+++
T Consensus 70 ~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 70 EALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.088 Score=42.10 Aligned_cols=48 Identities=19% Similarity=0.097 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 009011 403 VPNVLTYNTMISSACARSEEENALKLLQKMEE-DLCKPDCETYAPLLKM 450 (546)
Q Consensus 403 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~ 450 (546)
.|+..+..+++.+|+..|++..|+++++...+ .+++.+..+|..|++-
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 44555555555555555555555555544432 2344444445444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.12 Score=48.82 Aligned_cols=285 Identities=14% Similarity=0.032 Sum_probs=157.3
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCHHH----HHHHHHHHHccCCHHHHHHHHHH------hhcCCCCCHHHHHHHH
Q 009011 204 MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRA----LSVLMDTLVKGNSVEHAYKVFLE------FKDCIPLSSQIFNILI 273 (546)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~----~~~ll~~~~~~g~~~~a~~~~~~------~~~~~~~~~~~~~~li 273 (546)
..-+|+.|+....+.+|+...+.| ..|..| |..|..+|.-.+++++|.++... ....-.........|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 345889999999999999998877 444443 45566666677788888877632 1111111222333444
Q ss_pred HHHHhcCCHHHHHHHHHHH----HHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009011 274 HGWCKTRKVDDAQKAMKEM----FQQGFS-PDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGK 348 (546)
Q Consensus 274 ~~~~~~g~~~~a~~~~~~m----~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~ 348 (546)
+.+.-.|.+++|.-.-.+- .+.|-+ .....+..+...|...|+.-... .-.+.|-.++.++ .
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~ev~-~-------- 169 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAEVT-S-------- 169 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHHHH-H--------
Confidence 5555556666665443322 122111 11223333444444443321100 0001111111111 0
Q ss_pred cCCHHHHHHHHHH----HHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHh
Q 009011 349 AKQINEALKVYEK----MKSDDCL-PDTSFYSSLIFILSKAGRVKDANEIFEDMK----KQGVV-PNVLTYNTMISSACA 418 (546)
Q Consensus 349 ~g~~~~a~~~~~~----~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~-p~~~~~~~li~~~~~ 418 (546)
.++.|.++|.+ +.+.|-. .-...|..|-+.|.-.|+++.|...-+.-. +.|-. .....+..+..++.-
T Consensus 170 --al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 170 --ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF 247 (639)
T ss_pred --HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence 12223333322 1122100 123355666666777789999887655332 22211 123467778888888
Q ss_pred cCCHHHHHHHHHHHH----HCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHH
Q 009011 419 RSEEENALKLLQKME----EDLC-KPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK-----NDVSMDAGTYASLVRGLIE 488 (546)
Q Consensus 419 ~g~~~~A~~~~~~m~----~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~~~~li~~~~~ 488 (546)
.|+++.|.+.|+.-. +.|- .......-.|.++|.-..++++|+.++.+-.. .+..-....+..|..+|..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 999999999888653 3331 12234455677788888888999888876443 1122245678889999999
Q ss_pred cCChHHHHHHHHHHHH
Q 009011 489 SGKLELACSFFEEMIS 504 (546)
Q Consensus 489 ~g~~~~A~~~~~~m~~ 504 (546)
.|..++|+.+.+.-.+
T Consensus 328 lg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 328 LGEHRKALYFAELHLR 343 (639)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9999999988876554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.99 E-value=1.2 Score=40.65 Aligned_cols=142 Identities=14% Similarity=0.118 Sum_probs=69.1
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVD 321 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 321 (546)
....|+..+|..+|.......+.+...--.++.+|...|+.+.|..++..+...--.........-|..+.+.....+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 34556666666666665555555555666666666666776666666666654311111111112233333333333333
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC
Q 009011 322 DTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDC-LPDTSFYSSLIFILSKAG 385 (546)
Q Consensus 322 ~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g 385 (546)
.+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+. --|...-..++..+.-.|
T Consensus 224 ~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 224 DLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 333333221 11444444455556666666666665555544321 124444445555554444
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.99 E-value=1.4 Score=41.31 Aligned_cols=131 Identities=21% Similarity=0.317 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCH
Q 009011 352 INEALKVYEKMKSDDCLPDTSFYSSLIFILSK--AG----RVKDANEIFEDMKKQGV---VPNVLTYNTMISSACARSEE 422 (546)
Q Consensus 352 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~ 422 (546)
+++.+.+++.|.+.|+.-+..+|-+....... .. ...+|.++|+.|++... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566777888888877666666553333332 12 25568888888887543 2344555555443 33333
Q ss_pred ----HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009011 423 ----ENALKLLQKMEEDLCKPDCE--TYAPLLKMCCRKKR--MKVLNFLLTHMFKNDVSMDAGTYASLVR 484 (546)
Q Consensus 423 ----~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~li~ 484 (546)
+.+..+|+.+.+.|+..+.. ..+.++..+..... ...+.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 45666777777766655432 33333332222222 4467777778888887777766665543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.56 Score=42.79 Aligned_cols=145 Identities=12% Similarity=0.100 Sum_probs=88.0
Q ss_pred HHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCH
Q 009011 169 DVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSV 248 (546)
Q Consensus 169 ~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 248 (546)
......|++.+|..+|+.... . .+.+...--.+...|...|+.+.|..++..+...--.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~-~-~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQ-A-APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHH-h-CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 345567888888888888777 3 44456666677888888888888888888875432222222222334444444444
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCh
Q 009011 249 EHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ--GFSPDVVSYTCFIEHYCREKDF 317 (546)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~ 317 (546)
.+...+-.... ..|.|...-..+...+...|+.++|.+.+-.+..+ |.. |...-..++..+.-.|.-
T Consensus 220 ~~~~~l~~~~a-adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 220 PEIQDLQRRLA-ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPA 288 (304)
T ss_pred CCHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCC
Confidence 43333333332 35567777777788888888888887776666554 333 444455555555555533
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.63 Score=36.80 Aligned_cols=58 Identities=9% Similarity=0.115 Sum_probs=22.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009011 413 ISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKND 471 (546)
Q Consensus 413 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 471 (546)
+..+...|+-++..+++.++.+.+ .+++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333344444444444444443321 3444444444444444444444444444444433
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.038 Score=39.40 Aligned_cols=54 Identities=9% Similarity=0.136 Sum_probs=26.8
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
+.+.+++++|.++++.+....|.+...+.....++.+.|++++|...|+...+.
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 444444555555554444444444444555555555555555555555555443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.7 Score=46.70 Aligned_cols=26 Identities=8% Similarity=0.063 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009011 339 YTIVMHALGKAKQINEALKVYEKMKS 364 (546)
Q Consensus 339 ~~~li~~~~~~g~~~~a~~~~~~~~~ 364 (546)
+..++...+=.||-+.+++.+.+..+
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~ 216 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASK 216 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhc
Confidence 33444555555666666666555444
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.076 Score=47.57 Aligned_cols=84 Identities=18% Similarity=0.214 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009011 280 RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCRE----------------KDFRKVDDTLKEMQEKGCKPSVITYTIVM 343 (546)
Q Consensus 280 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----------------g~~~~a~~l~~~m~~~g~~p~~~~~~~li 343 (546)
+.++-....++.|.+-|+..|..+|+.|++.+-+. .+-+-+++++++|...|+.||..+-..++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 34555555566677777777777777777655432 23456888999999999999999999999
Q ss_pred HHHHhcCCH-HHHHHHHHHHH
Q 009011 344 HALGKAKQI-NEALKVYEKMK 363 (546)
Q Consensus 344 ~~~~~~g~~-~~a~~~~~~~~ 363 (546)
.++++.+-. .+..++.-.|.
T Consensus 166 n~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 166 NAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHhccccccHHHHHHHHHhhh
Confidence 999887743 33444444443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.82 E-value=1.3 Score=39.67 Aligned_cols=177 Identities=14% Similarity=0.137 Sum_probs=88.0
Q ss_pred HhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------
Q 009011 347 GKAKQINEALKVYEKMKSDD--CLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACA------ 418 (546)
Q Consensus 347 ~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~------ 418 (546)
.+.|++++|.+.|+.+.... -+-...+.-.++.++.+.+++++|...+++....-.......|-.-|.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 35566777777776666442 1123444555556666677777777766666654322222334444443332
Q ss_pred -cCCHHH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCChH
Q 009011 419 -RSEEEN---ALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTY-ASLVRGLIESGKLE 493 (546)
Q Consensus 419 -~g~~~~---A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~ 493 (546)
..+... |..-|++++.. -||..- ...|..-...+... ..-+ -.+.+-|.+.|.+.
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~r--yPnS~Y-------------a~dA~~~i~~~~d~-----LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQR--YPNSRY-------------APDAKARIVKLNDA-----LAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHH--CCCCcc-------------hhhHHHHHHHHHHH-----HHHHHHHHHHHHHHhcChH
Confidence 122222 33333333332 233210 00111111111000 0001 12345667778888
Q ss_pred HHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcChhhHHHHHHHHHHHHhhhc
Q 009011 494 LACSFFEEMISKGIVPY---HSTYKMLEEKLEKKRLGNAKERINKLLAHAKEQK 544 (546)
Q Consensus 494 ~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 544 (546)
.|..-+++|++. ..-+ ...+-.+..+|..-|..++|.+.-+.+....++.
T Consensus 185 AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 185 AAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 888888888776 2222 2334455677777888888888777776655443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.39 Score=47.77 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 335 SVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKK 399 (546)
Q Consensus 335 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 399 (546)
+...|..|.+...+.|+++.|++.|.+..+ +..|+-.|.-.|+.++..++.+....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555555555555555555444321 23344444444555444444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.89 Score=37.30 Aligned_cols=43 Identities=9% Similarity=0.094 Sum_probs=20.5
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 009011 166 TMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRG 210 (546)
Q Consensus 166 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~ 210 (546)
.++..+...+........++.+... +..+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~--~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKL--NSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHcc--CccchhHHHHHHHHHHHH
Confidence 3444444444555555555554442 224444555555555543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.65 E-value=1.9 Score=40.27 Aligned_cols=18 Identities=11% Similarity=0.049 Sum_probs=12.3
Q ss_pred HcCCChHHHHHHHHHHHh
Q 009011 172 GKSKKFCLMWELVKEMDE 189 (546)
Q Consensus 172 ~~~~~~~~a~~l~~~m~~ 189 (546)
.+.|+++.|..++.+...
T Consensus 4 ~~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhhCCHHHHHHHHHHhhh
Confidence 356777777777777665
|
It is also involved in sporulation []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=1.1 Score=37.37 Aligned_cols=87 Identities=14% Similarity=-0.043 Sum_probs=57.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 009011 416 ACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELA 495 (546)
Q Consensus 416 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 495 (546)
+...|++++|..+|.-+.-.+ .-+...+..|..+|-..+++++|...+......+.. |...+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 455677888887777776554 334445555666666677777777777776664432 444455566777777888888
Q ss_pred HHHHHHHHH
Q 009011 496 CSFFEEMIS 504 (546)
Q Consensus 496 ~~~~~~m~~ 504 (546)
...|+..++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 887777775
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.045 Score=39.62 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=6.9
Q ss_pred HHHHHHcCChHHHHHHHH
Q 009011 483 VRGLIESGKLELACSFFE 500 (546)
Q Consensus 483 i~~~~~~g~~~~A~~~~~ 500 (546)
...+...|++++|.++++
T Consensus 53 g~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 53 GECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 333333333333333333
|
... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.92 Score=35.92 Aligned_cols=65 Identities=18% Similarity=0.362 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 338 TYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVV 403 (546)
Q Consensus 338 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 403 (546)
.....+..+.+.|.-++-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-++|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44556666777777777777777776533 567777777777788888888888777777776643
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.54 E-value=3.5 Score=42.60 Aligned_cols=309 Identities=12% Similarity=0.095 Sum_probs=168.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 009011 202 TIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGN---SVEHAYKVFLEFKDCIPLSSQIFNILIHGWCK 278 (546)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 278 (546)
.++..+...+.+..|+++-..+...-... ...|.....-+.+.. +.+.+..+-+++.... .....|..+..-...
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHh
Confidence 45677777888888888877774221112 455555555555542 2222333333333221 344557777777778
Q ss_pred cCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-----------CCCCHHHHHHHH
Q 009011 279 TRKVDDAQKAMKEMFQQGFS----PDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKG-----------CKPSVITYTIVM 343 (546)
Q Consensus 279 ~g~~~~a~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-----------~~p~~~~~~~li 343 (546)
+|+.+-|..+++.=...+.. .+..-+...+.-+.+.|+.+-...++-.+...- .+.....|.-++
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~ 599 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFM 599 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 88888887776643322211 112233444555566677776666665555431 111111122111
Q ss_pred H--------HHHhcCCHHHHHHHHH--HH----HhCCCCCCHHHHHHHHHHHHhcCCHH----------HHHHHHHHHHH
Q 009011 344 H--------ALGKAKQINEALKVYE--KM----KSDDCLPDTSFYSSLIFILSKAGRVK----------DANEIFEDMKK 399 (546)
Q Consensus 344 ~--------~~~~~g~~~~a~~~~~--~~----~~~~~~~~~~~~~~li~~~~~~g~~~----------~A~~~~~~~~~ 399 (546)
+ .+.+.++-.++..-|. .. ...+..|+ .......+.+..... +-..+.+.+..
T Consensus 600 r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~ 676 (829)
T KOG2280|consen 600 RHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLED 676 (829)
T ss_pred Hhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 1 0011111111111111 00 00111222 223334444443311 11222222221
Q ss_pred -CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 009011 400 -QGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGT 478 (546)
Q Consensus 400 -~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 478 (546)
.|......+.+--+.-+...|+..+|.++-.+.+ -||...|..=+.+++..+++++.+++-+.+. .+.-
T Consensus 677 q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIG 746 (829)
T KOG2280|consen 677 QFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIG 746 (829)
T ss_pred HhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCC
Confidence 2323334455666667788899999998887764 5788899999999999999998877766554 2456
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHH
Q 009011 479 YASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERIN 534 (546)
Q Consensus 479 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 534 (546)
|.-.+.+|.+.|+.++|.+++.+.. |. . -...+|.+.|++.+|.++-
T Consensus 747 y~PFVe~c~~~~n~~EA~KYiprv~--~l---~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 747 YLPFVEACLKQGNKDEAKKYIPRVG--GL---Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred chhHHHHHHhcccHHHHhhhhhccC--Ch---H----HHHHHHHHhccHHHHHHHH
Confidence 7788999999999999999987763 21 1 4566677777777766553
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.52 E-value=2.6 Score=40.89 Aligned_cols=147 Identities=12% Similarity=0.185 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009011 301 VVSYTCFIEHYCREKDFRKVDDTLKEMQEKG-CKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIF 379 (546)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 379 (546)
...|...|+...+..-++.|..+|-+..+.| ..+++..++++|..++ .|+..-|.++|+.-...- +.+..--+..+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 3456666666666666777777777777766 5566666677766654 366666777776544331 112222234455
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 380 ILSKAGRVKDANEIFEDMKKQGVVPN--VLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCC 452 (546)
Q Consensus 380 ~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 452 (546)
.+...++-+.|..+|+...++ +..+ ...|..+|.--..-|+...+..+-+.|.+. .|...+...+...|.
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 556667777777777744331 1112 345666666666667777666666666553 455444444444443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.28 Score=44.07 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009011 403 VPNVLTYNTMISSACA-----RSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCR 453 (546)
Q Consensus 403 ~p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 453 (546)
+.|..+|.+.+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 4466777777766643 35566667777888888888888888888877654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.51 Score=39.23 Aligned_cols=89 Identities=13% Similarity=0.042 Sum_probs=51.6
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 009011 205 RRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDD 284 (546)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 284 (546)
-.+.+.|++++|..+|.-+.-.+ .-+..-+..|..++-..+++++|...|.......+.|+..+.-...+|...|+.+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33445666777776666665443 23344444555555556666666666655433223444445556666677777777
Q ss_pred HHHHHHHHHH
Q 009011 285 AQKAMKEMFQ 294 (546)
Q Consensus 285 a~~~~~~m~~ 294 (546)
|...|+....
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777766665
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.44 Score=42.00 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=13.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMD 188 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~ 188 (546)
.|..-..+|...++++.|..-+.+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34444455555566666555554443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.43 E-value=1.1 Score=45.18 Aligned_cols=161 Identities=14% Similarity=0.216 Sum_probs=93.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCCCC-------HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 009011 236 SVLMDTLVKGNSVEHAYKVFLEFKDCIPLS-------SQIFNILIHGWCK----TRKVDDAQKAMKEMFQQGFSPDVVSY 304 (546)
Q Consensus 236 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~ 304 (546)
..++....=.|+-+.+.+.+.+..+..... ...|+..+..++. ..+.+.|.++++.+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 344455555667777777666554321111 1224444444443 34677788888888775 3555555
Q ss_pred HHHH-HHHHhcCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-H
Q 009011 305 TCFI-EHYCREKDFRKVDDTLKEMQEKG---CKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLI-F 379 (546)
Q Consensus 305 ~~li-~~~~~~g~~~~a~~l~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~ 379 (546)
...- +.+...|++++|.+.|+...... .+.....+--+...+.-..++++|.+.|..+.+.. ..+..+|..+. .
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 4332 45556788888888888655321 11123344455666777888888888888888764 23344444333 3
Q ss_pred HHHhcCCH-------HHHHHHHHHHHH
Q 009011 380 ILSKAGRV-------KDANEIFEDMKK 399 (546)
Q Consensus 380 ~~~~~g~~-------~~A~~~~~~~~~ 399 (546)
++...|+. ++|.++|.++..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 34456666 788888877653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.07 Score=38.60 Aligned_cols=67 Identities=18% Similarity=0.124 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 476 AGTYASLVRGLIESGKLELACSFFEEMISK--GIVPY----HSTYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 476 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
..+|+.+...|...|++++|...|++..+. ...++ ..++..+..++...|+.++|.++++...++.+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 356788888999999999999999987754 12222 45677888899999999999999998876544
|
... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.34 Score=46.10 Aligned_cols=127 Identities=19% Similarity=0.141 Sum_probs=72.4
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhCC-------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHH
Q 009011 167 MVDVLGKSKKFCLMWELVKEMDELNN-------------GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTR 233 (546)
Q Consensus 167 ll~~~~~~~~~~~a~~l~~~m~~~~~-------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 233 (546)
-...|.+.|++..|...|+.....-. ...-..+++.+..++.+.+++.+|++.-+.....+ ++|..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchh
Confidence 34567788889888888877544110 01112345555556666666666666666655543 55555
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 009011 234 ALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDA-QKAMKEMFQ 294 (546)
Q Consensus 234 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~~ 294 (546)
.+-.-..++...|+++.|...|+++.+-.|.|..+-+.|+.+-.+.....+. .++|..|..
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555556666666666666666666655555555555555555544443332 445555543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.55 Score=45.84 Aligned_cols=67 Identities=12% Similarity=0.056 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 229 EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSS---QIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 229 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
+.+...++.+..+|.+.|++++|...|++.....|.+. .+|..+..+|.+.|+.++|...+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45566777777777777777777777777665555554 34777777777777777777777777664
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.19 E-value=2.1 Score=37.93 Aligned_cols=84 Identities=15% Similarity=0.177 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 009011 304 YTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSK 383 (546)
Q Consensus 304 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 383 (546)
|..-..+|....++++|...+.+..+. .+.+...|. . ...++.|.-+.+++.+. +.-...|+--..+|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-A------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 444445666667777776666555422 111211121 1 12234444444444442 1223445555566666
Q ss_pred cCCHHHHHHHHHHH
Q 009011 384 AGRVKDANEIFEDM 397 (546)
Q Consensus 384 ~g~~~~A~~~~~~~ 397 (546)
+|.++.|-..+++.
T Consensus 104 ~GspdtAAmaleKA 117 (308)
T KOG1585|consen 104 CGSPDTAAMALEKA 117 (308)
T ss_pred hCCcchHHHHHHHH
Confidence 66666555555443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.37 Score=46.98 Aligned_cols=66 Identities=12% Similarity=0.025 Sum_probs=58.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhhc
Q 009011 193 GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDT----RALSVLMDTLVKGNSVEHAYKVFLEFKD 260 (546)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 260 (546)
.+.+...++.+...|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|.+.+++..+
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6788999999999999999999999999998875 4553 4589999999999999999999988876
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.17 E-value=1.5 Score=36.00 Aligned_cols=43 Identities=16% Similarity=0.177 Sum_probs=21.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009011 341 IVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKA 384 (546)
Q Consensus 341 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 384 (546)
.++..+...+.......+++.+...+ ..+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34444444455555555555555544 23444555555555543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.69 Score=36.49 Aligned_cols=90 Identities=10% Similarity=0.078 Sum_probs=64.5
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHH---HHHHHHHHHhcCC
Q 009011 241 TLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ-GFSPDVVS---YTCFIEHYCREKD 316 (546)
Q Consensus 241 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~---~~~li~~~~~~g~ 316 (546)
+++..|+++.|.+.|.+...-.|.....||.-..++.-.|+.++|++-+++..+. |.+ +-.. |..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 4667788888888888877777788888888888888888888888888887765 332 2222 2222334666777
Q ss_pred hhHHHHHHHHHHHcC
Q 009011 317 FRKVDDTLKEMQEKG 331 (546)
Q Consensus 317 ~~~a~~l~~~m~~~g 331 (546)
-+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 787777777766665
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.09 E-value=5.6 Score=43.54 Aligned_cols=78 Identities=14% Similarity=0.079 Sum_probs=34.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 009011 413 ISSACARSEEENALKLLQKMEEDLCKPDCE--TYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESG 490 (546)
Q Consensus 413 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 490 (546)
+.+|...|+|.+|+.+..++... -+.. +-..|..-+...++.-+|.++..+.... ..-.+..|++..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAK 1040 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHh
Confidence 34444455555555554444221 1111 1133444455555555555555444321 122344455555
Q ss_pred ChHHHHHHHHH
Q 009011 491 KLELACSFFEE 501 (546)
Q Consensus 491 ~~~~A~~~~~~ 501 (546)
.+++|.++...
T Consensus 1041 ~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1041 EWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHHh
Confidence 56666555443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.00 E-value=2.6 Score=37.90 Aligned_cols=183 Identities=13% Similarity=0.087 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNN-GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMD 240 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 240 (546)
..|+.-+. -.+.|++++|.+-|+.+..+.+ .+....+.-.++-++-+.+++++|+..+++..+.-..-....|..-|.
T Consensus 36 ~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 36 ELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 34444433 3467888888888888876432 234566777777778888888888888888765432222233444444
Q ss_pred HHHcc-------CCHHHHHHHH---HHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009011 241 TLVKG-------NSVEHAYKVF---LEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEH 310 (546)
Q Consensus 241 ~~~~~-------g~~~~a~~~~---~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 310 (546)
+++.- .+...+...+ +++....|.+.. ...|...+..+... =...=-.+.+.
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y--------------a~dA~~~i~~~~d~----LA~~Em~Iary 176 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY--------------APDAKARIVKLNDA----LAGHEMAIARY 176 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc--------------hhhHHHHHHHHHHH----HHHHHHHHHHH
Confidence 43321 1222222222 222223332221 11222222222110 00000123355
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009011 311 YCREKDFRKVDDTLKEMQEKGCKPS---VITYTIVMHALGKAKQINEALKVYEKMKS 364 (546)
Q Consensus 311 ~~~~g~~~~a~~l~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 364 (546)
|.+.|.+..|..-+++|.+. .+-+ ...+-.+..+|...|-.++|.+.-.-+..
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 66777777777777777765 2211 22344455666666766666665444443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.59 Score=44.53 Aligned_cols=140 Identities=12% Similarity=-0.004 Sum_probs=72.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009011 342 VMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSE 421 (546)
Q Consensus 342 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 421 (546)
-...+.+.|++..|..-|++....= . |.+.-+.++..... . .-..+++.+..++.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l-~------------~~~~~~~ee~~~~~-~-------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFL-E------------YRRSFDEEEQKKAE-A-------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHh-h------------ccccCCHHHHHHHH-H-------HHHHHhhHHHHHHHhhhh
Confidence 3467888899999988888865420 0 00111111111111 0 112344455555666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH-HHHHHH
Q 009011 422 EENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLEL-ACSFFE 500 (546)
Q Consensus 422 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~ 500 (546)
+.+|++.-.+..+.+ ++|....-.=..+|...|+++.|...|+++.+..+. |..+-+.++..--+..+..+ ..++|.
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666665554 445555555555666666666666666666665433 33344444444333333332 255555
Q ss_pred HHHH
Q 009011 501 EMIS 504 (546)
Q Consensus 501 ~m~~ 504 (546)
.|..
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 5553
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.90 E-value=3.3 Score=38.58 Aligned_cols=116 Identities=11% Similarity=0.056 Sum_probs=57.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 279 TRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEK---GCKPSVITYTIVMHALGKAKQINEA 355 (546)
Q Consensus 279 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~a 355 (546)
.|++.+|-..++++.+.-+ -|..+++..=.+|.-.|+.+.-...++++... +++-....-..+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4555555555555555422 25555555555666666666555555555543 1111111112222233455566666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009011 356 LKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFED 396 (546)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 396 (546)
++.-++..+.+ +.|.-...+....+--.|++.++.++..+
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 66655555543 33444445555555555666666555444
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.86 E-value=3.5 Score=38.72 Aligned_cols=128 Identities=16% Similarity=0.301 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----ChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCC--
Q 009011 283 DDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR--EK----DFRKVDDTLKEMQEKG---CKPSVITYTIVMHALGKAKQ-- 351 (546)
Q Consensus 283 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g----~~~~a~~l~~~m~~~g---~~p~~~~~~~li~~~~~~g~-- 351 (546)
++...+++.|.+.|+.-+..+|-+....... .. ...++..+|+.|++.. ..++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445556666666666555444332221111 11 1344556666666542 12233334333322 2222
Q ss_pred --HHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009011 352 --INEALKVYEKMKSDDCLPD--TSFYSSLIFILSKAGR--VKDANEIFEDMKKQGVVPNVLTYNTM 412 (546)
Q Consensus 352 --~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l 412 (546)
.+.++.+|+.+.+.|+..+ ....+.++........ ..++.++++.+.+.|+++....|..+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 2344555555555554422 2222222222221111 23455555555555555555544443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.68 E-value=2.2 Score=35.65 Aligned_cols=135 Identities=13% Similarity=0.092 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHH-HHHHH
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTR-ALSVL 238 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~l 238 (546)
+...|..-++ +++.++.++|+.-|.++.+.+.+....-..-.......+.|+...|+..|+++-...-.|-.. -...|
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3445544443 456677788888888887755222223333334455667788888888888886544334332 12222
Q ss_pred H--HHHHccCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 239 M--DTLVKGNSVEHAYKVFLEFKD-CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 239 l--~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
= -.+...|.++......+-+.. +.|.....-.+|.-+-.+.|++.+|.+.|..+...
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1 234566777777766666543 45555556667777777788888888888777654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.58 E-value=1.3 Score=40.05 Aligned_cols=106 Identities=18% Similarity=0.134 Sum_probs=81.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC-C-CCCHHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNN-GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYG-V-EKDTRALSVLM 239 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~-~~~~~~~~~ll 239 (546)
.|+.-++.| +.|++..|...|....+..+ ......++..|...+...|++++|..+|..+.+.- - +.-+..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 577777766 56669999999998887432 34567788889999999999999999999887632 1 22346777788
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCHHHH
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSSQIF 269 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 269 (546)
.+..+.|+.++|..+|+++.+..|.+..+-
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 888889999999999998888777765543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.77 Score=47.77 Aligned_cols=246 Identities=15% Similarity=0.209 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHH----HHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 009011 198 ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMD----TLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILI 273 (546)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 273 (546)
.....-+..+.+...++-|+.+-+.- ..|..+...+.. -+-+.|++++|...|-+...-+.++ .+|
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s-----~Vi 404 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS-----EVI 404 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-----HHH
Confidence 34455578888888888888876553 334444444443 3456799999988886665544433 456
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 274 HGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQIN 353 (546)
Q Consensus 274 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 353 (546)
.-|....++.+--.+++.+.+.|.. +...-+.|+.+|.+.++.++..++.+... .|..- .-....+..|.+.+-.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--eeHHHHHHHHHHhChHH
Confidence 6777788888888889999988886 66667889999999999998887776654 33211 11345677777888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 354 EALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKME 433 (546)
Q Consensus 354 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 433 (546)
+|..+-.+... +......+ +-..+++++|.+.+..+.-...-+....|. ..+. ...+++-..++-+..
T Consensus 481 ~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~~e~l~~l~kyG---k~Ll-~h~P~~t~~ili~~~ 548 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPISELLRTLNKYG---KILL-EHDPEETMKILIELI 548 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCHHHHHHHHHHHH---HHHH-hhChHHHHHHHHHHH
Confidence 87766554433 23333433 445688999999988763211111222222 2222 246677777766665
Q ss_pred HCCCCCCHHHHHHHHH-----HHHhcCChHHHHHHHHHHHh
Q 009011 434 EDLCKPDCETYAPLLK-----MCCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 434 ~~~~~p~~~~~~~ll~-----~~~~~g~~~~a~~~~~~m~~ 469 (546)
....+++.......+. ...-.+++.....+++.|.+
T Consensus 549 t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E 589 (933)
T KOG2114|consen 549 TELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSE 589 (933)
T ss_pred hhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHh
Confidence 5433444333332222 22335667777777776765
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.48 E-value=1.6 Score=40.47 Aligned_cols=155 Identities=8% Similarity=-0.111 Sum_probs=100.1
Q ss_pred HHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC---CCCCCHHHHHHHHHHHHccC
Q 009011 170 VLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY---GVEKDTRALSVLMDTLVKGN 246 (546)
Q Consensus 170 ~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~g 246 (546)
.+-..|++.+|-..++++.+ . .|.+.-+++-.=.++.-+|+.+.-...++++... +++.....-....-++...|
T Consensus 112 i~~~~g~~h~a~~~wdklL~-d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLD-D-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HhhccccccHHHHHHHHHHH-h-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 34456777777777888777 3 5666667777777788888888888888877543 22222222234444566778
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHH
Q 009011 247 SVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPD---VVSYTCFIEHYCREKDFRKVDDT 323 (546)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~l 323 (546)
-+++|++.-++..+-.+.|...-.++.+.+--.|++.++.+++.+-...=-.-+ ..-|-...-.+...+.++.|+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 888888888877776777777788888888888888888877665432200000 11122222345566788888888
Q ss_pred HHH
Q 009011 324 LKE 326 (546)
Q Consensus 324 ~~~ 326 (546)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 865
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.33 E-value=1.3 Score=35.99 Aligned_cols=78 Identities=10% Similarity=0.112 Sum_probs=53.6
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 009011 167 MVDVLGKSKKFCLMWELVKEMDELNN-GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVK 244 (546)
Q Consensus 167 ll~~~~~~~~~~~a~~l~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 244 (546)
-.....+.|++++|.+.|+.+..+-+ ++-...+.-.++.+|.+.|++++|+..+++.++....--..-|...+.+++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 34445578899999999999887532 2345677778888999999999999999988875432222334444444443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=4.6 Score=39.76 Aligned_cols=119 Identities=8% Similarity=0.034 Sum_probs=64.7
Q ss_pred ChHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcc
Q 009011 176 KFCLMWELVKEMDELNN-GYVSLATMSTIMRRLVR---------GGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKG 245 (546)
Q Consensus 176 ~~~~a~~l~~~m~~~~~-~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 245 (546)
..+.|..+|.+...... .|.....|..+..++.. .....+|.++-++..+.+ +-|..+...+..++.-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 34567777777762110 23334444333332221 122344555555555554 55666666666555556
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 246 NSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 246 g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
++.+.|...|++...-.|....+|....-...-.|+.++|.+.+++..+.
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 66666666666666555555566665555566666666666666665444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.31 E-value=3.4 Score=43.31 Aligned_cols=254 Identities=14% Similarity=0.184 Sum_probs=151.6
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHH----HHhcCChHHHHHHHHHhhhCCCCCCHHHH
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRR----LVRGGRYDDAVEAFRGMKKYGVEKDTRAL 235 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 235 (546)
.......-++++.+...++.|..+-+. ...+..+...+... +.+.|++++|...|-+-... ++|.
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~------~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s---- 401 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKS------QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS---- 401 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHh------cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH----
Confidence 445667788999999999988877642 33445554444444 45689999999988776532 2332
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009011 236 SVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK 315 (546)
Q Consensus 236 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 315 (546)
.++.-+.....+.....+++.+.+.--.+...-..|+.+|.+.++.++-.++.+... .|.- ..-....+..+.+.+
T Consensus 402 -~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 402 -EVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSN 477 (933)
T ss_pred -HHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhC
Confidence 234445555666666677777766545566778899999999999998877766554 2221 112344566777777
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 316 DFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFE 395 (546)
Q Consensus 316 ~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 395 (546)
-.++|.-+-..... .......++ -..+++++|++++..+.-....+....|...+ . ...+++-..++-
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp~~e~l~~l~kyGk~L---l-~h~P~~t~~ili 545 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLPISELLRTLNKYGKIL---L-EHDPEETMKILI 545 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHH---H-hhChHHHHHHHH
Confidence 77777665544332 333444443 45689999999998764322222222332222 1 234556555555
Q ss_pred HHHHCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 009011 396 DMKKQGVVPNVLTYNTMIS-----SACARSEEENALKLLQKMEEDLCKPDCE 442 (546)
Q Consensus 396 ~~~~~~~~p~~~~~~~li~-----~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 442 (546)
+.......++.......+. ...-.+++.....+++.|.+. .|+..
T Consensus 546 ~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~--s~~s~ 595 (933)
T KOG2114|consen 546 ELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEI--SPDSE 595 (933)
T ss_pred HHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhc--CCCch
Confidence 5543222222222222111 223356777777788888886 55553
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.05 E-value=5.2 Score=37.36 Aligned_cols=101 Identities=14% Similarity=0.085 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009011 338 TYTIVMHALGKAKQIN---EALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMIS 414 (546)
Q Consensus 338 ~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 414 (546)
++..++.+|...+..+ +|..+++.+.... +-...++-.-+..+.+.++.+.+.+++..|...- .-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 4555666666666543 4555555554432 2223444444555556777777777777777632 112233444444
Q ss_pred HH---HhcCCHHHHHHHHHHHHHCCCCCCH
Q 009011 415 SA---CARSEEENALKLLQKMEEDLCKPDC 441 (546)
Q Consensus 415 ~~---~~~g~~~~A~~~~~~m~~~~~~p~~ 441 (546)
.+ .. .....|...+..+....+.|..
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 33 22 2344555666555544444444
|
It is also involved in sporulation []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.96 E-value=4.9 Score=39.53 Aligned_cols=116 Identities=10% Similarity=0.089 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009011 352 INEALKVYEKMKSD-DCLPD-TSFYSSLIFILSKA---------GRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARS 420 (546)
Q Consensus 352 ~~~a~~~~~~~~~~-~~~~~-~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 420 (546)
.+.|..+|.+.... ...|+ ...|..+..++... ....+|.++.+...+.+. -|......+..+..-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhc
Confidence 45666667766611 12232 44444444443321 123445555555555443 25555555555555556
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009011 421 EEENALKLLQKMEEDLCKPD-CETYAPLLKMCCRKKRMKVLNFLLTHMFKN 470 (546)
Q Consensus 421 ~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 470 (546)
+.+.|..+|++....+ || ..+|......+.-.|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 6777777777666642 33 334444444455566777777776665554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.74 E-value=7.3 Score=38.01 Aligned_cols=138 Identities=14% Similarity=0.114 Sum_probs=81.2
Q ss_pred HHHcCCChHHHHHHHHHHHhhCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH--
Q 009011 170 VLGKSKKFCLMWELVKEMDELNNGYVSL------ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDT-- 241 (546)
Q Consensus 170 ~~~~~~~~~~a~~l~~~m~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~-- 241 (546)
.+.+.+++.+|.++|.++-+.. ..+. ..-+.++++|..+ +.+.....+....+. .| ...|..+..+
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~--~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~ 88 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK--ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALV 88 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHH
Confidence 4567889999999999888732 2232 2234555666543 444444444444432 22 2233333333
Q ss_pred HHccCCHHHHHHHHHHhhcCC----CC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHH
Q 009011 242 LVKGNSVEHAYKVFLEFKDCI----PL-----------SSQIFNILIHGWCKTRKVDDAQKAMKEMFQQG----FSPDVV 302 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~----~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~~~ 302 (546)
+-+.+.+++|.+.+....+.. ++ +...-+..++++.+.|++.+++.+++++...= ..-+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 346778888888775554321 11 11123566778888888888888888877643 336777
Q ss_pred HHHHHHHHHHh
Q 009011 303 SYTCFIEHYCR 313 (546)
Q Consensus 303 ~~~~li~~~~~ 313 (546)
+|+.++-.+.+
T Consensus 169 ~yd~~vlmlsr 179 (549)
T PF07079_consen 169 MYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHhH
Confidence 88776555544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.89 Score=41.74 Aligned_cols=78 Identities=15% Similarity=0.225 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh-----CCCCCCHHHHH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKK-----YGVEKDTRALS 236 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~ 236 (546)
.++..++..+..+|+++.+.+.++++.. . .+.+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~-~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIE-L-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHh-c-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4678899999999999999999999988 4 788999999999999999999999999998864 57788777666
Q ss_pred HHHHH
Q 009011 237 VLMDT 241 (546)
Q Consensus 237 ~ll~~ 241 (546)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.54 E-value=3 Score=33.01 Aligned_cols=91 Identities=12% Similarity=0.022 Sum_probs=48.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCC
Q 009011 345 ALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLT---YNTMISSACARSE 421 (546)
Q Consensus 345 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~ 421 (546)
+++..|+++.|++.|.+....- +.....||.-..++.-.|+.++|++=+++..+..-..+... |..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3455666666666666655542 33556666666666666666666666666554321112221 1122223445566
Q ss_pred HHHHHHHHHHHHHCC
Q 009011 422 EENALKLLQKMEEDL 436 (546)
Q Consensus 422 ~~~A~~~~~~m~~~~ 436 (546)
-+.|..-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666655554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.54 E-value=8.1 Score=38.29 Aligned_cols=57 Identities=19% Similarity=0.152 Sum_probs=31.9
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 238 LMDTLVKGNSVEHAYKVFLEFKDCIPL--SSQIFNILIHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 238 ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (546)
+..++-+.|+.++|.+.+.++.+..|. ...+...|+.++...+.+.++..++.+..+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 444444556666666666665543332 233455666666666666666666666543
|
The molecular function of this protein is uncertain. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.53 E-value=4.7 Score=35.15 Aligned_cols=118 Identities=21% Similarity=0.216 Sum_probs=68.2
Q ss_pred hhhHHHHHHHHHhcCCChHHHHHHHhcCCCCCCHHHHHHHHHhhcCChhHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHH
Q 009011 94 ETDVDKISKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMH-TPEMYNTMVDVLG 172 (546)
Q Consensus 94 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~a~~~f~~~~~~~g~~~-~~~~~~~ll~~~~ 172 (546)
+..+.+++.+|....-.+++--..+-+.|+--+.--+ +..|.--|..+. .+.| -+.+||.|.-.+.
T Consensus 44 EV~iarlsqlL~~~~l~~eeRA~l~fERGvlYDSlGL----------~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~ 110 (297)
T COG4785 44 EVILARMSQILASRALTDEERAQLLFERGVLYDSLGL----------RALARNDFSQAL---AIRPDMPEVFNYLGIYLT 110 (297)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHhcchhhhhhH----------HHHHhhhhhhhh---hcCCCcHHHHHHHHHHHH
Confidence 4457888888877666666544444456655443322 222222222222 2233 3567888888888
Q ss_pred cCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 009011 173 KSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY 226 (546)
Q Consensus 173 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (546)
..|+++.|.+.|+...+.. ..-+-...|.-|. +.-.|++.-|.+-|...-+.
T Consensus 111 ~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 111 QAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred hcccchHHHHHhhhHhccC-CcchHHHhcccee-eeecCchHhhHHHHHHHHhc
Confidence 8888888888888887733 2223333333333 23457777777766666543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.46 E-value=5.2 Score=35.39 Aligned_cols=188 Identities=15% Similarity=0.101 Sum_probs=86.4
Q ss_pred CChHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009011 211 GRYDDAVEAFRGMKKYGVE-KDTRALSVLMDTLVKGNSVEHAYKVFLEFKD--CIPLSSQIFNILIHGWCKTRKVDDAQK 287 (546)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~ 287 (546)
+....+...+......... .....+......+...+.+..+...+..... ..+.....+..+...+...++...+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444432211 1234445555555556666666555555443 334444555555555556666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009011 288 AMKEMFQQGFSPDVVSYTCFIE-HYCREKDFRKVDDTLKEMQEKGC--KPSVITYTIVMHALGKAKQINEALKVYEKMKS 364 (546)
Q Consensus 288 ~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~a~~l~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 364 (546)
.+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666655543222 111111112 45555666666666655533111 01222222223334445555555555555554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 365 DDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKK 399 (546)
Q Consensus 365 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 399 (546)
.........+..+...+...++++.|...+.....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 32111234444444445555555555555555443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.42 E-value=9.8 Score=38.52 Aligned_cols=132 Identities=9% Similarity=0.073 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009011 161 PEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMD 240 (546)
Q Consensus 161 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 240 (546)
...|+.+|.---.....+.+..+++.+.. . .|.-...|......-.+.|..+.+.++|++-.. |++-....|...+.
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~-k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLS-K-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLA 121 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHh-h-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 33455555555555556677777777775 2 444455565666666677888888888888765 45666666655554
Q ss_pred HHH-ccCCHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 241 TLV-KGNSVEHAYKVFLEFKDCIP---LSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 241 ~~~-~~g~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
.++ ..|+.+.....|+....... .+...|...|..-..++++.....++++.++.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 443 45777777777777665222 34556788888878888888888888888874
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.24 E-value=1 Score=40.73 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=22.5
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 238 LMDTLVKGNSVEHAYKVFLEFKDCIP---LSSQIFNILIHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 238 ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (546)
|..++...|+.+.|..+|..+.+..| .-+.....|..+..+.|+.++|..+|+++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34444444444444444443333222 1123333333444444444444444444443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.78 E-value=6.5 Score=34.70 Aligned_cols=225 Identities=16% Similarity=0.057 Sum_probs=144.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009011 279 TRKVDDAQKAMKEMFQQGFSP-DVVSYTCFIEHYCREKDFRKVDDTLKEMQEK-GCKPSVITYTIVMHALGKAKQINEAL 356 (546)
Q Consensus 279 ~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~ 356 (546)
.+....+...+.......... ....+......+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 456666666666666553321 3566677777788888888888888777652 23335556666677777778888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 357 KVYEKMKSDDCLPDTSFYSSLIF-ILSKAGRVKDANEIFEDMKKQGV--VPNVLTYNTMISSACARSEEENALKLLQKME 433 (546)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 433 (546)
+.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888877754333 122222223 67788888888888888755221 1123333444444566778888888888887
Q ss_pred HCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009011 434 EDLCKP-DCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKG 506 (546)
Q Consensus 434 ~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 506 (546)
... .. ....+..+...+...++.+.+...+......... ....+..+...+...|..+++...+.+.....
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 753 22 3566777777777788888888888887775333 23444444445556667888888777777543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.34 Score=30.34 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=7.6
Q ss_pred HHHHHhcCChHHHHHHHHHh
Q 009011 204 MRRLVRGGRYDDAVEAFRGM 223 (546)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m 223 (546)
...|.+.|++++|.++|++.
T Consensus 8 a~~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 8 ARAYRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 33333333333333333333
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.44 Score=29.84 Aligned_cols=41 Identities=2% Similarity=-0.120 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIM 204 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li 204 (546)
.++..+...|.+.|++++|.++|+++.+ . .|.+...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~-~-~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA-L-DPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-H-CcCCHHHHHHhh
Confidence 4677899999999999999999999998 4 666777765543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.49 E-value=2.3 Score=36.49 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009011 268 IFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPD--VVSYTCFIEHYCREKDFRKVDDTLKEMQE 329 (546)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (546)
.+..+...|++.|+.++|.+.|.++.+....+. ...+-.+|......+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 466777777777777777777777776543332 34555666667777777777766666554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.47 E-value=1.5 Score=40.35 Aligned_cols=76 Identities=11% Similarity=0.156 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHHHHHHHH
Q 009011 269 FNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQE-----KGCKPSVITYTIVM 343 (546)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~g~~p~~~~~~~li 343 (546)
+..++..+..+|+.+.+...++++....+- +...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 344444444444444444444444443222 444444444455555544444444444433 24555444444444
Q ss_pred HH
Q 009011 344 HA 345 (546)
Q Consensus 344 ~~ 345 (546)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 43
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.25 E-value=9.8 Score=35.99 Aligned_cols=130 Identities=12% Similarity=0.064 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCCHHHH
Q 009011 269 FNILIHGWCKTRKVDDAQKAMKEMFQQG-----FSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQE----KGCKPSVITY 339 (546)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~----~g~~p~~~~~ 339 (546)
..++..++...+.++++++.|+...+-- .......|..|-..|.+..|+++|.-+.....+ -++.--...|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 3345555555556666666666554321 111233455666666666666666555443332 1222111122
Q ss_pred HH-----HHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 340 TI-----VMHALGKAKQINEALKVYEKMKSD----DCL-PDTSFYSSLIFILSKAGRVKDANEIFEDMK 398 (546)
Q Consensus 340 ~~-----li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 398 (546)
.. +.-++...|.+..|.+.-++..+. |-. .-......+.+.|...|+.+.|+.-|++..
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 22 223455666666666666555432 311 112233445566667777777766666543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.76 E-value=24 Score=38.97 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 009011 512 STYKMLEEKLEKKRLGNAKERINKLLAH 539 (546)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 539 (546)
.....++.++...|+.+.|.++.+....
T Consensus 1185 ~E~~~Ll~~l~~~g~~eqa~~Lq~~f~e 1212 (1265)
T KOG1920|consen 1185 NELKRLLEVLVTFGMDEQARALQKAFDE 1212 (1265)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3455778888888999988887666543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.66 E-value=6.3 Score=32.06 Aligned_cols=56 Identities=9% Similarity=0.032 Sum_probs=33.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009011 381 LSKAGRVKDANEIFEDMKKQGVV--PNVLTYNTMISSACARSEEENALKLLQKMEEDL 436 (546)
Q Consensus 381 ~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 436 (546)
..+.|++++|.+.|+.+..+-.. -....--.++.+|.+.+++++|...+++.++.+
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 34566777777777776654211 123344556666677777777777777766653
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.30 E-value=8.1 Score=32.57 Aligned_cols=100 Identities=14% Similarity=0.225 Sum_probs=42.8
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009011 323 TLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGV 402 (546)
Q Consensus 323 l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 402 (546)
+++.+.+.+++|+...+..+++.+.+.|++... ..+...++-+|.......+-.+. +....+.++--+|.++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH--
Confidence 334444455555555555555555555554432 23333344444433333322222 1222233333333221
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 403 VPNVLTYNTMISSACARSEEENALKLLQKM 432 (546)
Q Consensus 403 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 432 (546)
=...+..++..+...|++-+|+++.+..
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0013344445555556666665555543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.60 E-value=9.5 Score=32.16 Aligned_cols=136 Identities=15% Similarity=0.225 Sum_probs=82.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009011 286 QKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSD 365 (546)
Q Consensus 286 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 365 (546)
.+.+..+.+.++.|+...|..+++.+.+.|++... .++...++-+|.......+-.+.. ....+.++=-.|.+.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 34556666778888888888888888888886654 445556666666555544433322 233333333333332
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 366 DCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEED 435 (546)
Q Consensus 366 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 435 (546)
= ...+..+++.+...|++-+|.++.+.... .+......++.+..+.++...-..+++-..+.
T Consensus 88 L----~~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 L----GTAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred h----hhhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0 01345677788888998888888876532 12233355667777777766655555555443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.58 E-value=15 Score=34.33 Aligned_cols=202 Identities=12% Similarity=0.047 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCC
Q 009011 300 DVVSYTCFIEHYCREKDF----RKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQI-----NEALKVYEKMKSDDCLPD 370 (546)
Q Consensus 300 ~~~~~~~li~~~~~~g~~----~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~-----~~a~~~~~~~~~~~~~~~ 370 (546)
|...-...+.++...|+. +++...+..+... .++...-...+.+++..+.. ..+...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 444444444455555542 3455555544322 23444444444554443321 122222322222 235
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009011 371 TSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARS-EEENALKLLQKMEEDLCKPDCETYAPLLK 449 (546)
Q Consensus 371 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 449 (546)
..+-...+.++++.++ +++...+-.+.+. ++...-...+.++.+.+ +...+...+..+.. .++...-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 5555566666666665 3455555555542 34444444444444432 13345555555553 345556666666
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 450 MCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLE 522 (546)
Q Consensus 450 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 522 (546)
++.+.|+.+ +...+-...+.+ + .....+.++...|.. +|...+..+.+.. ||..+-...+.+|.
T Consensus 215 aLg~~~~~~-av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~~ 278 (280)
T PRK09687 215 GLALRKDKR-VLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKLK 278 (280)
T ss_pred HHHccCChh-HHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHHh
Confidence 777776643 443333333332 2 233566777777775 5777777777533 46666655555553
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.35 E-value=21 Score=35.63 Aligned_cols=79 Identities=19% Similarity=0.171 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 009011 370 DTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVP-NVLTYNTMISSACARSEEENALKLLQKMEEDLCKPD-CETYAPL 447 (546)
Q Consensus 370 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l 447 (546)
-..+-..+..+.-+.|+.++|.+.+.+|.+..... .......|+.++...+.+.++..++.+-.+...+.+ ..+|+..
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaA 337 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAA 337 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 34444556677778888888888888887543221 233556678888888888888888887654332222 2445544
Q ss_pred H
Q 009011 448 L 448 (546)
Q Consensus 448 l 448 (546)
+
T Consensus 338 L 338 (539)
T PF04184_consen 338 L 338 (539)
T ss_pred H
Confidence 4
|
The molecular function of this protein is uncertain. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.22 E-value=9.7 Score=31.69 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=9.2
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 009011 276 WCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~ 294 (546)
+...|++.+|.++|+++.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3444555555555555443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.96 E-value=5.1 Score=34.37 Aligned_cols=61 Identities=16% Similarity=0.150 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 373 FYSSLIFILSKAGRVKDANEIFEDMKKQGVVPN--VLTYNTMISSACARSEEENALKLLQKME 433 (546)
Q Consensus 373 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 433 (546)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|+...-.+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444555555555555555555555554322222 1233444455555555555555554443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.94 E-value=2 Score=39.49 Aligned_cols=101 Identities=12% Similarity=0.246 Sum_probs=46.7
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 009011 227 GVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDC----IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVV 302 (546)
Q Consensus 227 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 302 (546)
|.+....+...++.......+++.+...+-+++.. ..++. +-.++++.+.+ -+.++++.++..=++-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 33444444445555444455566665555555431 00111 11122222222 23345555555555555555555
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009011 303 SYTCFIEHYCREKDFRKVDDTLKEMQE 329 (546)
Q Consensus 303 ~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (546)
+++.+|+.+.+.+++.+|..+.-.|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 555555555555555555555544443
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=89.74 E-value=16 Score=33.60 Aligned_cols=114 Identities=13% Similarity=0.192 Sum_probs=63.7
Q ss_pred ChHHHHHHHHHhhh-CCCCCCHHHHHHHHHHHHcc-C-CHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 009011 212 RYDDAVEAFRGMKK-YGVEKDTRALSVLMDTLVKG-N-SVEHAYKVFLEFKDC--IPLSSQIFNILIHGWCKTRKVDDAQ 286 (546)
Q Consensus 212 ~~~~A~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~-g-~~~~a~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~ 286 (546)
...+|+.+|+...- ..+-.|..+...++...... + ....-.++.+-+... ..++..+.-.++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666664321 23456666666666665542 1 222222333333322 3445556666667777777777777
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009011 287 KAMKEMFQQ-GFSPDVVSYTCFIEHYCREKDFRKVDDTLK 325 (546)
Q Consensus 287 ~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~l~~ 325 (546)
++++..... +..-|...|..+|+...+.|+..-..++.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 666665544 455566667777777777777655554444
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=89.74 E-value=12 Score=39.03 Aligned_cols=116 Identities=13% Similarity=0.171 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCHHHH
Q 009011 404 PNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKN----DVSMDAGTY 479 (546)
Q Consensus 404 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~ 479 (546)
.+...-.-++..|.+.|-.+.|.++.+.+-..-. ...-|...+..+.+.|+.+.+..+.+.+.+. |...+....
T Consensus 403 ~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll 480 (566)
T PF07575_consen 403 DTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLL 480 (566)
T ss_dssp -SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------------------------------
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHH
Confidence 3445556666777777777777777766644321 2234556666667777766666555555432 211111111
Q ss_pred HHH---------HHHH---------HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009011 480 ASL---------VRGL---------IESGKLELACSFFEEMISKGIVPYHSTYKMLEEKL 521 (546)
Q Consensus 480 ~~l---------i~~~---------~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 521 (546)
+.+ +..| .+.|++.+|.+.+-.+...++.|...-...+.++.
T Consensus 481 ~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~l 540 (566)
T PF07575_consen 481 DNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDAL 540 (566)
T ss_dssp ------------------------------------------------------------
T ss_pred HHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Confidence 111 1111 23467777777777777777777666555555543
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.65 E-value=3.9 Score=41.18 Aligned_cols=150 Identities=17% Similarity=0.139 Sum_probs=91.2
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009011 313 REKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANE 392 (546)
Q Consensus 313 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 392 (546)
..|+++.|..++..+. ...-+.++..+.+.|..++|+++- +|..- -.....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHH
Confidence 3455555554443322 224455666667777777666542 22211 1233457788888877
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009011 393 IFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDV 472 (546)
Q Consensus 393 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 472 (546)
+..+.. +..-|..|..+....|++..|.+.|.+... |..|+-.+...|+-+....+-....+.|.
T Consensus 659 la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 766543 567788888888888888888888876543 44566666777777666666666655543
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009011 473 SMDAGTYASLVRGLIESGKLELACSFFEEM 502 (546)
Q Consensus 473 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 502 (546)
. |.-.-+|...|+++++.+++.+-
T Consensus 724 ~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 N------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred c------chHHHHHHHcCCHHHHHHHHHhc
Confidence 3 23344556678888877776543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.59 E-value=6.2 Score=39.85 Aligned_cols=151 Identities=11% Similarity=0.077 Sum_probs=106.9
Q ss_pred HcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 009011 172 GKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHA 251 (546)
Q Consensus 172 ~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 251 (546)
.-.|+++.|..++..+. ....+.++..+-++|..++|+++ .+|..- -.....+.|+++.|
T Consensus 597 vmrrd~~~a~~vLp~I~--------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA 656 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP--------KEIRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIA 656 (794)
T ss_pred hhhccccccccccccCc--------hhhhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHH
Confidence 34578888877665444 33455567777778888888765 222221 12334678999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 009011 252 YKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKG 331 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 331 (546)
.++..+.. +..-|..|.+...+.|++..|.+.|....+ |..|+-.+...|+-+....+-....+.|
T Consensus 657 ~~la~e~~-----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 657 FDLAVEAN-----SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHHHhhc-----chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 98876654 556699999999999999999999887764 4567777888888887777777777776
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 332 CKPSVITYTIVMHALGKAKQINEALKVYEKM 362 (546)
Q Consensus 332 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 362 (546)
.. |. ..-+|...|+++++.+++.+-
T Consensus 723 ~~-N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 723 KN-NL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred cc-ch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 44 33 224566789999998887654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.52 E-value=0.39 Score=28.07 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=17.3
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009011 259 KDCIPLSSQIFNILIHGWCKTRKVDDAQ 286 (546)
Q Consensus 259 ~~~~~~~~~~~~~li~~~~~~g~~~~a~ 286 (546)
.+..|.+...|+.+...|...|++++|+
T Consensus 6 ie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 6 IELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3345666666666666666666666654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.50 E-value=0.94 Score=26.81 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 009011 478 TYASLVRGLIESGKLELACSFFEEMI 503 (546)
Q Consensus 478 ~~~~li~~~~~~g~~~~A~~~~~~m~ 503 (546)
+|..|...|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777777777777777777743
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.38 E-value=30 Score=36.06 Aligned_cols=49 Identities=10% Similarity=0.077 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHhhh
Q 009011 177 FCLMWELVKEMDELNNGYVSLATMSTIMRR-LVRGGRYDDAVEAFRGMKK 225 (546)
Q Consensus 177 ~~~a~~l~~~m~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~ 225 (546)
...|.+.++...+.+....-...=.....+ +....+.+.|+.+|+.+.+
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 456777777776644111111111111222 3345677778888877755
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.71 E-value=1.1 Score=26.54 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHh
Q 009011 200 MSTIMRRLVRGGRYDDAVEAFRGM 223 (546)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m 223 (546)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666777777777776663
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.65 E-value=1.9 Score=39.69 Aligned_cols=104 Identities=18% Similarity=0.173 Sum_probs=72.5
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCH
Q 009011 155 TGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNN--GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDT 232 (546)
Q Consensus 155 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 232 (546)
.|..++..+-..++..-....+++.+...+-++..... ..+++..+ ++++.+. .-++++++-++..=.+.|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 45555555666677777777778888877777655210 11222222 2244333 33677899888888889999999
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhc
Q 009011 233 RALSVLMDTLVKGNSVEHAYKVFLEFKD 260 (546)
Q Consensus 233 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 260 (546)
.+++.+++.+.+.+++.+|.++...+..
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999999999888877654
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=88.54 E-value=28 Score=34.74 Aligned_cols=181 Identities=8% Similarity=0.028 Sum_probs=107.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009011 333 KPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTM 412 (546)
Q Consensus 333 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 412 (546)
..|.....+++..++..-...-++.+..+|...| .+-..|..++.+|... ..++-..+|+.+.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 3355566677777777777777777777777765 4566777777887777 556677777777765443 44444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC--C---HHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 009011 413 ISSACARSEEENALKLLQKMEEDLCKP--D---CETYAPLLKMCCRKKRMKVLNFLLTHMFK-NDVSMDAGTYASLVRGL 486 (546)
Q Consensus 413 i~~~~~~g~~~~A~~~~~~m~~~~~~p--~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~ 486 (546)
..-|-+ ++.+.+..+|.++...=++- + ...|..+... -..+.+....+..++.+ .|...-...+..+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 444444 67777777777776542210 1 1233333321 13456666666666665 44444455555666667
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009011 487 IESGKLELACSFFEEMISKGIVPYHSTYKMLEEKL 521 (546)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 521 (546)
....++++|++++....+.. .-|...-..++..+
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 77777888888887776653 12333333444443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.25 E-value=32 Score=35.04 Aligned_cols=179 Identities=14% Similarity=0.116 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 009011 336 VITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVV--PNVLTYNTMI 413 (546)
Q Consensus 336 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li 413 (546)
..+|...+.--.+.|+.+.+.-+|+...-.- ..=...|--.+.-....|+.+-|..++....+-.++ |....+.+.+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3455555555555666666655555544210 111122222233333335555555555444332222 1122222221
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHH---HHHHHHHhCCCCCCHHHHHHHHHH----
Q 009011 414 SSACARSEEENALKLLQKMEEDLCKPDCE-TYAPLLKMCCRKKRMKVLN---FLLTHMFKNDVSMDAGTYASLVRG---- 485 (546)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~---~~~~~m~~~~~~~~~~~~~~li~~---- 485 (546)
.-..|+++.|..+++.+.+.- |+.. .-..-+....+.|..+.+. .++....+... +..+...+.--
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARL 449 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHH
Confidence 122456666666666665542 3321 1112223344555555555 22222222111 11122222111
Q ss_pred -HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 486 -LIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLE 522 (546)
Q Consensus 486 -~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 522 (546)
+.-.++.+.|..++.+|.+. ++++...|..+++.+.
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 12245666666666666544 3344444555554443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.20 E-value=3 Score=31.03 Aligned_cols=59 Identities=10% Similarity=0.233 Sum_probs=36.3
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 009011 215 DAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILI 273 (546)
Q Consensus 215 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 273 (546)
++.+-++.+....+.|++....+.+.+|-+.+++..|.++++.++.....+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 34445555555566777777777777777777777777777766644333444455444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.11 E-value=26 Score=33.83 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=26.0
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 009011 168 VDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMK 224 (546)
Q Consensus 168 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (546)
..+..+.|+++...+....... ..+....+..+... +.|+++++....+...
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~---~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r 56 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNE---DSPEYSFYRALLAL--RQGDYDEAKKYIEKAR 56 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccC---CChhHHHHHHHHHH--hCccHHHHHHHHHHHH
Confidence 4455566666664444444332 12233333333322 6666776666666554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=88.04 E-value=39 Score=35.72 Aligned_cols=62 Identities=6% Similarity=0.035 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-------hHHHHHHHHHhhhC
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGR-------YDDAVEAFRGMKKY 226 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~ 226 (546)
.+| .+|-.|.|+|.+++|.++..+... . .......+-..+..|....+ -++...-|++..+.
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRN-Q-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGG-G-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhh-h-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 455 678889999999999999966554 2 33334455555777766422 23445555555543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.81 E-value=18 Score=31.70 Aligned_cols=179 Identities=13% Similarity=0.100 Sum_probs=89.6
Q ss_pred CChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 009011 175 KKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKV 254 (546)
Q Consensus 175 ~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 254 (546)
|-+..|+-=|.+... - .|.-+..||-+.-.+...|+++.|.+.|+...+....-+-...|.-+ ++--.|+.+-|.+-
T Consensus 79 GL~~LAR~DftQaLa-i-~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d 155 (297)
T COG4785 79 GLRALARNDFSQALA-I-RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDD 155 (297)
T ss_pred hHHHHHhhhhhhhhh-c-CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHH
Confidence 333444444444444 2 44557788888888888999999999998887653222222222222 23345778888777
Q ss_pred HHHhhcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 009011 255 FLEFKDCIPLSSQ--IFNILIHGWCKTRKVDDAQKAMK-EMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKG 331 (546)
Q Consensus 255 ~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 331 (546)
+...-...|.|+. .|--++. ..-+..+|..-+. +... .|..-|...|-.|.- |++. ...+++.+....
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a 226 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKADA 226 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhc
Confidence 7666655554542 2222221 2234445543332 2222 254555544433322 1111 112233322211
Q ss_pred CC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009011 332 CK------PSVITYTIVMHALGKAKQINEALKVYEKMKSD 365 (546)
Q Consensus 332 ~~------p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 365 (546)
-. .=..||--+.+-+...|+.++|..+|+-.+..
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 00 01234555566666667777777666665543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.79 E-value=0.93 Score=26.47 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=18.0
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 009011 465 THMFKNDVSMDAGTYASLVRGLIESGKLELAC 496 (546)
Q Consensus 465 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 496 (546)
++.++..+. +...|+.+...|...|++++|.
T Consensus 3 ~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 334444433 5666666666666666666664
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=87.55 E-value=26 Score=33.27 Aligned_cols=44 Identities=14% Similarity=0.226 Sum_probs=21.1
Q ss_pred ccCCHHHHHHHHHHhhcC---CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009011 244 KGNSVEHAYKVFLEFKDC---IPLSSQIFNILIHGWCKTRKVDDAQK 287 (546)
Q Consensus 244 ~~g~~~~a~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~ 287 (546)
...+.++|...+.+.... ......++..+..+.++.|.+++++.
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 445555555555443321 11223345555556666665555443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.98 E-value=17 Score=30.58 Aligned_cols=15 Identities=0% Similarity=0.140 Sum_probs=5.8
Q ss_pred CChhHHHHHHHHHHH
Q 009011 315 KDFRKVDDTLKEMQE 329 (546)
Q Consensus 315 g~~~~a~~l~~~m~~ 329 (546)
+..++|+.-|.++.+
T Consensus 72 ~k~d~Alaaf~~lek 86 (221)
T COG4649 72 NKTDDALAAFTDLEK 86 (221)
T ss_pred CCchHHHHHHHHHHh
Confidence 333333333333333
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.83 E-value=8.7 Score=29.02 Aligned_cols=60 Identities=10% Similarity=0.218 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 009011 215 DAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIH 274 (546)
Q Consensus 215 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~ 274 (546)
+..+-++.+....+.|++....+.+.+|-+.+++..|.++++.++.........|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 455556666666677888888888888888888888888888776644433335655553
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=86.58 E-value=23 Score=31.53 Aligned_cols=139 Identities=18% Similarity=0.146 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 338 TYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSAC 417 (546)
Q Consensus 338 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 417 (546)
.....+..|.+.-++..|....+++.+. ... .+.+--|.+..+-.--.++.+-....+++-+.....+++ +.
T Consensus 132 AlRRtMEiyS~ttRFalaCN~s~KIiEP-----IQS-RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--ft 203 (333)
T KOG0991|consen 132 ALRRTMEIYSNTTRFALACNQSEKIIEP-----IQS-RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FT 203 (333)
T ss_pred HHHHHHHHHcccchhhhhhcchhhhhhh-----HHh-hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hh
Confidence 4455566777777777776666666542 222 223334556555555555555555556655555555554 45
Q ss_pred hcCCHHHHHHHHHHHHHC-C-----------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 009011 418 ARSEEENALKLLQKMEED-L-----------CKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRG 485 (546)
Q Consensus 418 ~~g~~~~A~~~~~~m~~~-~-----------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 485 (546)
..|+..+|+..++.-... | -.|.+.....++..| ..+++++|.+++.++.+.|+.|.. ..+.+.+.
T Consensus 204 a~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv 281 (333)
T KOG0991|consen 204 AQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPED-IITTLFRV 281 (333)
T ss_pred ccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHH-HHHHHHHH
Confidence 678888888887765432 1 256666667777655 456788888888888888887543 33444444
Q ss_pred H
Q 009011 486 L 486 (546)
Q Consensus 486 ~ 486 (546)
+
T Consensus 282 ~ 282 (333)
T KOG0991|consen 282 V 282 (333)
T ss_pred H
Confidence 3
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.39 E-value=5.6 Score=29.66 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 318 RKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMK 363 (546)
Q Consensus 318 ~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 363 (546)
-++.+-++.+...+..|++....+.+++|.+.+++..|.++++-++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455555666666667777777777777777777777777777665
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=85.99 E-value=34 Score=33.00 Aligned_cols=53 Identities=13% Similarity=0.092 Sum_probs=33.1
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhc
Q 009011 204 MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD 260 (546)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 260 (546)
+.+..+.|+++...+........ .++...+..+... +.++.+++....+....
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 56677888888855555554422 2345555555433 77888888888766543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.49 E-value=12 Score=28.40 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009011 319 KVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKS 364 (546)
Q Consensus 319 ~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 364 (546)
+..+-++.+...+..|++....+.+++|.+.+++..|.++|+-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555666677777777777777777777777777766654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=85.27 E-value=31 Score=31.87 Aligned_cols=86 Identities=13% Similarity=0.165 Sum_probs=58.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-----HHHCCCCC
Q 009011 436 LCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKN-DVSMDAGTYASLVRGLIESGKLELACSFFEE-----MISKGIVP 509 (546)
Q Consensus 436 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~g~~p 509 (546)
+..++..+...++..++..+++....++|+..... ++.-|...|..+|......|+..-..++.++ .+..|+..
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v 276 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDV 276 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcC
Confidence 34667777777888888888888888888777664 5666778888888888888887666665554 22334555
Q ss_pred CHHHHHHHHHHH
Q 009011 510 YHSTYKMLEEKL 521 (546)
Q Consensus 510 ~~~~~~~l~~~~ 521 (546)
+...-..+-+.+
T Consensus 277 ~~~L~~~L~~LF 288 (292)
T PF13929_consen 277 TDELRSQLSELF 288 (292)
T ss_pred CHHHHHHHHHHH
Confidence 555544444444
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.21 E-value=57 Score=34.02 Aligned_cols=186 Identities=13% Similarity=0.078 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHcCCChHHHHHHHHHHHhh---CCCCCCHHHHHHHHHHHHhcC-----C
Q 009011 142 TPAFGFFTWAKTQTGYMHTPEMYNTMVDV-LGKSKKFCLMWELVKEMDEL---NNGYVSLATMSTIMRRLVRGG-----R 212 (546)
Q Consensus 142 ~~a~~~f~~~~~~~g~~~~~~~~~~ll~~-~~~~~~~~~a~~l~~~m~~~---~~~~~~~~~~~~li~~~~~~g-----~ 212 (546)
..++.+++.+........-...-...... ++..++++.|...|+.+.+. ....-.......+...|.+.. +
T Consensus 229 ~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d 308 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKID 308 (552)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcccc
Confidence 34566666655322211111111222233 55677899999999888661 001112334455566666543 5
Q ss_pred hHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH----hcCCHHHHHH
Q 009011 213 YDDAVEAFRGMKKYGVEKDTRALSVLMDTLVK-GNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWC----KTRKVDDAQK 287 (546)
Q Consensus 213 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~a~~ 287 (546)
.+.|+.+|.+..+.| .|+...+...+..... ..+...|.++|........... +-.+..+|. -..+.+.|..
T Consensus 309 ~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A--~~~la~~y~~G~gv~r~~~~A~~ 385 (552)
T KOG1550|consen 309 YEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILA--IYRLALCYELGLGVERNLELAFA 385 (552)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHH--HHHHHHHHHhCCCcCCCHHHHHH
Confidence 566888888877766 5555544433333322 2456677777766654222222 222222222 1235667777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 009011 288 AMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGC 332 (546)
Q Consensus 288 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 332 (546)
++++..+.|. |...--...+..+.. ++++.+.-.+..+.+.|.
T Consensus 386 ~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 386 YYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 7777766652 221111122223333 566666666665555543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.19 E-value=2.9 Score=25.30 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009011 477 GTYASLVRGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 477 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (546)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677777778888888888888777654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.18 E-value=67 Score=34.04 Aligned_cols=105 Identities=14% Similarity=0.191 Sum_probs=62.4
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccC
Q 009011 167 MVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGN 246 (546)
Q Consensus 167 ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 246 (546)
-++.+.+.+.+++|+++-+......+...........|..+.-.|++++|-...-.|.. .+...|..-+..+...+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELD 437 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcccc
Confidence 35667788888888888776654211112455666678888888888888887777752 33444444444444444
Q ss_pred CHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHh
Q 009011 247 SVEHAYKVFLEFKDCIP-LSSQIFNILIHGWCK 278 (546)
Q Consensus 247 ~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~ 278 (546)
+... ++.-+..+.+ .+..+|..++..+..
T Consensus 438 ~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccch---hhccCCCCCcccCchHHHHHHHHHHH
Confidence 4432 2222333222 455667777776666
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.00 E-value=3.3 Score=25.06 Aligned_cols=27 Identities=19% Similarity=0.421 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhh
Q 009011 198 ATMSTIMRRLVRGGRYDDAVEAFRGMK 224 (546)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (546)
.+++.+...|...|++++|.+++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456666666667777777776666654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.28 E-value=26 Score=28.75 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=33.1
Q ss_pred CCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 009011 174 SKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY 226 (546)
Q Consensus 174 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (546)
.++++++..+++.|....+..+...++... .+...|++++|+.+|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhcc
Confidence 677777777777777644444444454433 355677788888887777654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.71 E-value=0.33 Score=40.07 Aligned_cols=85 Identities=15% Similarity=0.136 Sum_probs=53.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 009011 412 MISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGK 491 (546)
Q Consensus 412 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 491 (546)
++..+.+.+.++.+..+++.+...+...+....+.++..|++.+..+....+++.... .-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcch
Confidence 4556666777777777777777665455667777777777777776776666652111 222355666677777
Q ss_pred hHHHHHHHHHHH
Q 009011 492 LELACSFFEEMI 503 (546)
Q Consensus 492 ~~~A~~~~~~m~ 503 (546)
+++|.-++.++.
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 777777776653
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=81.66 E-value=28 Score=28.61 Aligned_cols=20 Identities=15% Similarity=0.370 Sum_probs=9.6
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 009011 276 WCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~ 295 (546)
+...|++++|.++|+++.+.
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHcCCHHHHHHHHHhhhcc
Confidence 33445555555555554443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.18 E-value=12 Score=32.76 Aligned_cols=77 Identities=17% Similarity=0.138 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 009011 408 TYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKND--VSMDAGTYASLVRG 485 (546)
Q Consensus 408 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~ 485 (546)
|.+..++.+.+.+...+|+...++-.+.+ +-|..+-..+++.+|-.|++++|..-++-.-+.. ..+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556778888899999999998877763 4455666778889999999999998888766632 33445667766654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=81.11 E-value=5.2 Score=22.94 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 477 GTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 477 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
.+|..+...+...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45667777777888888888888777643
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.07 E-value=36 Score=29.53 Aligned_cols=89 Identities=13% Similarity=0.101 Sum_probs=41.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 009011 380 ILSKAGRVKDANEIFEDMKKQGVVPN-----VLTYNTMISSACARSEEENALKLLQKMEEDLCKPD-CETYAPLLKMCCR 453 (546)
Q Consensus 380 ~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~ 453 (546)
-+.+.|++++|..-|...++.- ++. .+.|..-..++.+.+.++.|++--.+.++.+ |+ ......-..+|.+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 3455666666666666655431 111 1223333344555555666555555555542 21 1122222234555
Q ss_pred cCChHHHHHHHHHHHhCC
Q 009011 454 KKRMKVLNFLLTHMFKND 471 (546)
Q Consensus 454 ~g~~~~a~~~~~~m~~~~ 471 (546)
...++.|..-++.+.+..
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 555555555555555543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.50 E-value=0.54 Score=38.77 Aligned_cols=83 Identities=16% Similarity=0.159 Sum_probs=42.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009011 342 VMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSE 421 (546)
Q Consensus 342 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 421 (546)
++..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++.. +......++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34445555566666666666665544445666666666666665555555555411 11222334444555555
Q ss_pred HHHHHHHHHH
Q 009011 422 EENALKLLQK 431 (546)
Q Consensus 422 ~~~A~~~~~~ 431 (546)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.45 E-value=38 Score=29.48 Aligned_cols=71 Identities=7% Similarity=-0.010 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC---CCCCCHHHHHHHHHHHHccCCHHHH
Q 009011 179 LMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY---GVEKDTRALSVLMDTLVKGNSVEHA 251 (546)
Q Consensus 179 ~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~g~~~~a 251 (546)
.|.+.|-.+...+ ...++.....+...| -..+.++++.++....+. +-.+|+..+..|...+-+.|+.+.|
T Consensus 124 ~A~~~fL~~E~~~-~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTP-ELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCC-CCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4444554444422 223333333333333 344555555555554331 1234445555555555555554444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 546 | ||||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 4e-04 |
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 97.6 bits (242), Expect = 2e-21
Identities = 72/513 (14%), Positives = 150/513 (29%), Gaps = 137/513 (26%)
Query: 53 KFF-DSQSPDEDFVIPSLAGWVESHRLNEKSRISSR--------VLSENH---ETDVDKI 100
KF + + F++ + + + I R V ++ + K+
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 101 SKILSKQYQSPDKVVEALKGCGVSVSNSLVEQTLRRFSNDLTPAFGFFTWAKTQTGYMHT 160
+ L + + + +++ + G G + + + F F W ++
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTW---VALDVCLSYKVQCKMDFKIF-WLN--LKNCNS 194
Query: 161 PEMYNTMVDVLGKSKKFC--LMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRY----- 213
PE VL +K + D +N + + ++ +RRL++ Y
Sbjct: 195 PE------TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 214 --DD-----AVEAFRGMKKYGVEKD--------TRALSVLMDTLVKGN----SVEHAYKV 254
+ A AF + TR V D L S++H
Sbjct: 249 VLLNVQNAKAWNAF----------NLSCKILLTTRFKQV-TDFLSAATTTHISLDHHSMT 297
Query: 255 F---------------------LEFKDCIPLSSQIFNILIHGWCKT---------RKVDD 284
E P I I T K+
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 285 AQKA---------MKEMFQQG--FSPDV-VSYTCFIEHYCREKDFRKVDDTLKEMQEKGC 332
++ ++MF + F P + + + V + ++ +
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI-LLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 333 -----KPSVIT-YTIVMHALGKA-------KQINEALKVYEKMKSDDCLP---DTSFYSS 376
K S I+ +I + K + I + + + SDD +P D FYS
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 377 LIFILSKAGRVKDANE---IFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKME 433
+ L + +F D + + + +++ ++ A N L+ L+ +
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFR---FLEQKIRHDS--TAWNASGSILNTLQQLKFYK 531
Query: 434 EDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTH 466
+C + Y L+ +L+FL
Sbjct: 532 PYICD-NDPKYERLVN--------AILDFLPKI 555
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 9e-11
Identities = 69/424 (16%), Positives = 128/424 (30%), Gaps = 97/424 (22%)
Query: 51 WIKFFDSQSPDEDFVIPSLAGWVESHRLNEKSRISSRVLSENHETDVDKISKIL-SKQY- 108
W+ + SP+ + + +S SS + H ++ ++L SK Y
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLKSKPYE 244
Query: 109 ---------QSPDKVVEALK-GCGV-------SVSNSLVEQTLRRFS-NDLTPAFG---- 146
Q+ K A C + V++ L T S + +
Sbjct: 245 NCLLVLLNVQNA-KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 147 ---FFTWAKTQTGYMHTPEMYNTM---VDVLGKSKK-FCLMWELVKEM--DELNNGY-VS 196
+ + + E+ T + ++ +S + W+ K + D+L S
Sbjct: 304 KSLLLKYLDCRPQDL-PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 197 LATMS-TIMRRLVRGGRYDD-AVEAFRGMKKYGVEKD----TRALSVL---MDTLVKGNS 247
L + R++ +D +V F T LS++ +
Sbjct: 363 LNVLEPAEYRKM-----FDRLSV--FP--------PSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 248 VEHAYKVFLEFKDCIPLSSQIFNILIHGWCKT-------RKVDDAQKAMKEMFQQGFSPD 300
V +K L K + I +I + K R + D K P
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 301 VV-SYTCF--------IEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQ 351
+ Y IEH R FR V + +++K + + +A G
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK-----IRHDSTAWNASGSILN 522
Query: 352 INEALKVYEKMKSDDCLPDTSFYSSLIFILSKAG----RVKDAN-----------EIFED 396
+ LK Y+ D+ ++++ L K K + IFE+
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
Query: 397 MKKQ 400
KQ
Sbjct: 583 AHKQ 586
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 81.0 bits (198), Expect = 4e-16
Identities = 30/227 (13%), Positives = 78/227 (34%), Gaps = 10/227 (4%)
Query: 223 MKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIP----LSSQIFNILIHGWCK 278
+ + + L + + + A+ + + L+ ++N ++ GW +
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177
Query: 279 TRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR-EKDFRKVDDTLKEMQEKGCKPSVI 337
+ + + G +PD++SY ++ R ++D ++ L++M ++G K +
Sbjct: 178 QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237
Query: 338 TYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDM 397
+++ +A + KV LP S L+ + ++ +
Sbjct: 238 FTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPL 297
Query: 398 KKQGVVPNV-----LTYNTMISSACARSEEENALKLLQKMEEDLCKP 439
K + L + S + +K +K + L
Sbjct: 298 KTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQ 344
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 76.4 bits (186), Expect = 1e-14
Identities = 30/268 (11%), Positives = 75/268 (27%), Gaps = 6/268 (2%)
Query: 283 DDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIV 342
A Q SP ++ + + +
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 343 MHALGKAKQINEALKV---YEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKK 399
Q+ A + + + L Y++++ ++ G K+ + +K
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 400 QGVVPNVLTYNTMISSACARSE--EENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRM 457
G+ P++L+Y + R + + L++M ++ K A LL R +
Sbjct: 194 AGLTPDLLSYAAAL-QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252
Query: 458 KVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKML 517
K ++ + + L+R + + + + + L
Sbjct: 253 KAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMEL 312
Query: 518 EEKLEKKRLGNAKERINKLLAHAKEQKT 545
++ + ++ K KT
Sbjct: 313 ASRVCVVSVEKPTLPSKEVKHARKTLKT 340
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.5 bits (124), Expect = 3e-07
Identities = 40/387 (10%), Positives = 101/387 (26%), Gaps = 46/387 (11%)
Query: 152 KTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDEL--NNGYVSLATMSTIMRRLVR 209
+Q + + + L L+ ++L + +M R
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177
Query: 210 GGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIF 269
G + + V +K G+ D + + + + +
Sbjct: 178 QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR------------------------- 212
Query: 270 NILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQE 329
+ + ++ +++M Q+G + + R + V
Sbjct: 213 --------QDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSL 264
Query: 330 KGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKD 389
P + + ++ + K++ +K+ CL + + + A RV
Sbjct: 265 PPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLH------MELASRVCV 318
Query: 390 ANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLK 449
+ + + V T T+ AL+ + E + P L
Sbjct: 319 VSVEKPTLPSKEVKHARKTLKTLRD--QWEKALCRALRETKNRLEREVYEGRFSLYPFLC 376
Query: 450 MCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVP 509
+ +V+ LL + ++ T + + + +
Sbjct: 377 LL---DEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQNH 433
Query: 510 YHSTYKMLEEKLEKKRLGNAKERINKL 536
Y +L E ++ L
Sbjct: 434 YRKYLCLLASDAEVPEPCLPRQYWEAL 460
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 546 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.74 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.71 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.7 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.69 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.69 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.64 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.64 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.63 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.63 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.63 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.6 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.59 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.58 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.58 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.58 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.57 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.57 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.57 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.57 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.57 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.57 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.55 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.51 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.49 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.49 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.47 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.47 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.47 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.45 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.44 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.43 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.4 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.39 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.38 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.38 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.38 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.38 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.38 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.31 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.3 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.3 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.28 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.28 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.25 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.24 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.22 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.15 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.14 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.13 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.13 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.1 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.05 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.05 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.03 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.99 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.99 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.98 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.95 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.95 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.93 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.93 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.93 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.89 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.89 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.89 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.89 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.88 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.85 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.85 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.85 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.83 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.82 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.81 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.81 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.81 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.8 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.8 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.76 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.76 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.76 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.75 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.71 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.69 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.67 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.66 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.62 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.62 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.61 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.6 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.58 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.57 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.56 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.56 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.55 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.54 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.54 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.53 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.53 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.52 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.51 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.5 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.47 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.47 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.46 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.45 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.42 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.41 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.41 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.41 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.4 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.37 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.36 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.36 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.36 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.33 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.32 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.32 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.32 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.29 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.26 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.25 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.24 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.22 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.21 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.19 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.18 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.17 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.17 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.16 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.16 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.16 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.13 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.13 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.12 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.11 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.09 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.06 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.04 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.01 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.01 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.99 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.97 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.93 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.92 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.9 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.89 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.86 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.86 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.85 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.85 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.82 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.79 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.77 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.77 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.75 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.61 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.6 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.56 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.56 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.56 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.55 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.53 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.47 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.4 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.37 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.37 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.3 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.3 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.23 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.11 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.05 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.99 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.85 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.43 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.37 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.31 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.25 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.21 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.15 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.04 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.02 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.94 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.84 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.75 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.64 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.44 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.41 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.23 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.19 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.17 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.12 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.88 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.33 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.94 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.72 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.84 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.47 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.31 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.22 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.06 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.04 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.42 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.26 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.07 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 89.83 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.2 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.18 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.99 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 88.44 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 87.78 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.88 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 86.51 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 85.54 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.46 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.21 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 82.85 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 82.49 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 81.74 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 81.39 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 80.06 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-34 Score=298.02 Aligned_cols=418 Identities=11% Similarity=0.009 Sum_probs=357.3
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhhc--CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 009011 113 KVVEALKGCGVSVSNSLVEQTLRRFS--NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDEL 190 (546)
Q Consensus 113 ~~~~~l~~~~~~~~~~~~~~~l~~~~--~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~ 190 (546)
..++.+. +..|+...+..+...+. ++.+.|+..|..+. ...++..+++.++.+|.+.|++++|.++|+++...
T Consensus 105 ~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 179 (597)
T 2xpi_A 105 FVGEKVL--DITGNPNDAFWLAQVYCCTGDYARAKCLLTKED---LYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPF 179 (597)
T ss_dssp HHHHHHH--HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC---GGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTT
T ss_pred HHHHHHH--hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHh---ccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCc
Confidence 3444444 34567777766666653 57888898888764 34688999999999999999999999999953221
Q ss_pred C--------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHH------------------
Q 009011 191 N--------------NGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVL------------------ 238 (546)
Q Consensus 191 ~--------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l------------------ 238 (546)
. ..+.+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+...+..+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l 258 (597)
T 2xpi_A 180 RKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKL 258 (597)
T ss_dssp C----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHS
T ss_pred cccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhc
Confidence 1 013458899999999999999999999999998754 3334443333
Q ss_pred --------------------HHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 239 --------------------MDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFS 298 (546)
Q Consensus 239 --------------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 298 (546)
+..|.+.|++++|.++|+++... +++..+++.++.+|.+.|++++|.++|+++.+.+..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 337 (597)
T 2xpi_A 259 NYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY 337 (597)
T ss_dssp CTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc
Confidence 44566789999999999988764 689999999999999999999999999999987654
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009011 299 PDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLI 378 (546)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 378 (546)
+..+|+.++.+|.+.|++++|.++++++.+.. +.+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++
T Consensus 338 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 414 (597)
T 2xpi_A 338 -NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFA 414 (597)
T ss_dssp -CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 78889999999999999999999999999663 4578899999999999999999999999998864 45788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 009011 379 FILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMK 458 (546)
Q Consensus 379 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 458 (546)
.+|.+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|+++
T Consensus 415 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 492 (597)
T 2xpi_A 415 HSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQ 492 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHH
Confidence 999999999999999999998653 478999999999999999999999999998874 557899999999999999999
Q ss_pred HHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHH
Q 009011 459 VLNFLLTHMFKN----DVSMD--AGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKER 532 (546)
Q Consensus 459 ~a~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 532 (546)
+|..+++++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|...|++++|.+
T Consensus 493 ~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAIT 571 (597)
T ss_dssp HHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999885 66777 7899999999999999999999999999875 3478899999999999999999999
Q ss_pred HHHHHHHHhhh
Q 009011 533 INKLLAHAKEQ 543 (546)
Q Consensus 533 ~~~~m~~~~~~ 543 (546)
+++.+.+..++
T Consensus 572 ~~~~~l~~~p~ 582 (597)
T 2xpi_A 572 HLHESLAISPN 582 (597)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHhcCCC
Confidence 99999877654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=295.10 Aligned_cols=405 Identities=10% Similarity=0.003 Sum_probs=353.7
Q ss_pred CCHHHHHHHHHhhc--CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHH
Q 009011 125 VSNSLVEQTLRRFS--NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMST 202 (546)
Q Consensus 125 ~~~~~~~~~l~~~~--~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~ 202 (546)
++...+..+++.+. ++.+.|+..|..+. +..|+..++..++.+|.+.|++++|..+|+.+.. .+.+..+++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~ 155 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVL---DITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYL 155 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHH---hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHH
Confidence 34556666666553 57888999999886 3456889999999999999999999999999865 4678899999
Q ss_pred HHHHHHhcCChHHHHHHHHHhhh-C--------------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHH
Q 009011 203 IMRRLVRGGRYDDAVEAFRGMKK-Y--------------GVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQ 267 (546)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~-~--------------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 267 (546)
++..|.+.|++++|+++|+++.. . +.+.+..+++.++.+|.+.|++++|.+.|+++....|.+..
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 235 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE 235 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhH
Confidence 99999999999999999995422 1 23446889999999999999999999999999876666666
Q ss_pred HHHHH--------------------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009011 268 IFNIL--------------------------------------IHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIE 309 (546)
Q Consensus 268 ~~~~l--------------------------------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 309 (546)
.+..+ +..|.+.|++++|.++|+++.+. .++..+|+.++.
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 313 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHH
Confidence 55544 55666889999999999999876 478999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009011 310 HYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKD 389 (546)
Q Consensus 310 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 389 (546)
+|.+.|++++|.++|+++.+.+.. +..++..++.+|.+.|++++|.++++++.+.. +.+..+++.++.+|.+.|++++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999987533 67789999999999999999999999998754 5678999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009011 390 ANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 390 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 469 (546)
|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998754 2368899999999999999999999999999875 55788999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 470 NDVSMDAGTYASLVRGLIESGKLELACSFFEEMISK----GIVPY--HSTYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 470 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
.... +..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|+.++|.++++.+.+...
T Consensus 470 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 470 LFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp HCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred hCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 6554 7899999999999999999999999999876 66788 78999999999999999999999999877654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.98 E-value=4.4e-31 Score=265.56 Aligned_cols=212 Identities=18% Similarity=0.243 Sum_probs=104.3
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 285 AQKAMKEMFQQGFSPDV-VSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMK 363 (546)
Q Consensus 285 a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 363 (546)
++.+.+++.+.+..... ..++.+|++|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.+...++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------- 80 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------- 80 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence 34444455544443332 245556666666666666666666666666666666666666666554431100
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 009011 364 SDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCET 443 (546)
Q Consensus 364 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 443 (546)
.+.+.+++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 81 ------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 142 (501)
T 4g26_A 81 ------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS 142 (501)
T ss_dssp ------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred ------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce
Confidence 00112344555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 444 YAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLE 522 (546)
Q Consensus 444 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 522 (546)
|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|.
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555555555443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.98 E-value=7.3e-31 Score=263.98 Aligned_cols=206 Identities=16% Similarity=0.172 Sum_probs=178.5
Q ss_pred HHHHHHHHHhhc-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------h
Q 009011 249 EHAYKVFLEFKD-CIPLS-SQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKD---------F 317 (546)
Q Consensus 249 ~~a~~~~~~~~~-~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~ 317 (546)
..++.+.+++.+ +.... ..+++.+|++|++.|++++|.++|++|.+.|+.||..|||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 344455566654 34433 346899999999999999999999999999999999999999999998765 6
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 318 RKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDM 397 (546)
Q Consensus 318 ~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 397 (546)
++|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009011 398 KKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRK 454 (546)
Q Consensus 398 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 454 (546)
.+.|+.||..+|++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999888764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-26 Score=226.59 Aligned_cols=372 Identities=11% Similarity=0.058 Sum_probs=273.0
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVE 218 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 218 (546)
++.+.|+..+..+... .+.+...+..+...+...|++++|...++...+ . .+.+..+|..+...+.+.|++++|++
T Consensus 13 g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-Q-NPLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c-CCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 5677777777666532 234456677777777788888888888877776 3 56677788888888888888888888
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 219 AFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFS 298 (546)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 298 (546)
.|+++.+.. +.+..++..+..++.+.|++++|.+.|+++....|.+...+..+...+...|++++|.+.|+++.+..+.
T Consensus 89 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 167 (388)
T 1w3b_A 89 HYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 888877643 4456677778888888888888888887777666667777777888888888888888888887766432
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009011 299 PDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLI 378 (546)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 378 (546)
+..+|..+...+...|++++|...|+++.+.+. .+...+..+...+...|++++|...+++..+.. +.+..++..+.
T Consensus 168 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 244 (388)
T 1w3b_A 168 -FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLA 244 (388)
T ss_dssp -CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHH
Confidence 567777788888888888888888888877642 256677777778888888888888888777654 33567777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 009011 379 FILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMK 458 (546)
Q Consensus 379 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 458 (546)
..|.+.|++++|.+.|+++.+.+. .+..+|..+...+.+.|++++|.+.++++.+.. +.+..++..+...+...|+++
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHH
Confidence 888888888888888888877542 256677777888888888888888888877763 556777778888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 009011 459 VLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPY-HSTYKMLEEKLEK 523 (546)
Q Consensus 459 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~ 523 (546)
+|...++++.+..+. +..++..+...+.+.|++++|...|+++.+. .|+ ...+..+...+..
T Consensus 323 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 323 EAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHH
Confidence 888888887775433 5677788888888888888888888888754 343 4445555444443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-25 Score=221.66 Aligned_cols=366 Identities=10% Similarity=-0.017 Sum_probs=320.3
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccC
Q 009011 167 MVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGN 246 (546)
Q Consensus 167 ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 246 (546)
+...+.+.|++++|.+.++.+.+ . .|.+...+..+...+.+.|++++|...++...+.. +.+..++..+..++.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~-~-~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWR-Q-EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 45667789999999999999987 3 66778888888999999999999999999988754 678899999999999999
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 009011 247 SVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKE 326 (546)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~ 326 (546)
++++|.+.|+++....|.+..+|..+..++.+.|++++|.+.|+++.+..+. +...+..+...+...|++++|.+.|++
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999998877888889999999999999999999999999887533 456677788889999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009011 327 MQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNV 406 (546)
Q Consensus 327 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 406 (546)
+.+.. +.+..+|..+...+.+.|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..+... .+.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCH
Confidence 99874 3367889999999999999999999999999875 44678899999999999999999999999887542 367
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009011 407 LTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGL 486 (546)
Q Consensus 407 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 486 (546)
.++..+..++...|++++|.+.++++.+.+ +.+..+|..+...+.+.|++++|...++++.+..+ .+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHH
Confidence 889999999999999999999999999874 44578899999999999999999999999998654 3788999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 487 IESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
.+.|++++|...++++.+.. +.+..++..+...+.+.|++++|.+.++.+.+..+
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999999998653 34577888999999999999999999998876543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-22 Score=202.83 Aligned_cols=362 Identities=10% Similarity=0.026 Sum_probs=294.3
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHH
Q 009011 159 HTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVL 238 (546)
Q Consensus 159 ~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 238 (546)
.+...+..+...+.+.|++++|.++|+++.+ . .+.+..++..+...+.+.|++++|++.|+++.+.+ +.+..++..+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~-~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVD-G-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 4566788899999999999999999999988 3 56789999999999999999999999999998865 5678899999
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCH---HHHHHHH------------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 009011 239 MDTLVKGNSVEHAYKVFLEFKDCIPLSS---QIFNILI------------HGWCKTRKVDDAQKAMKEMFQQGFSPDVVS 303 (546)
Q Consensus 239 l~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~li------------~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 303 (546)
..++...|++++|.+.|+++....|.+. ..+..++ ..+.+.|++++|...|+++.+.... +...
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 179 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAEL 179 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHH
Confidence 9999999999999999999988777666 6776664 4489999999999999999886543 7888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH------
Q 009011 304 YTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSL------ 377 (546)
Q Consensus 304 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------ 377 (546)
+..+..+|.+.|++++|.+.|+++.+.. +.+..++..+...|...|++++|...|+++.+.. +.+...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHH
Confidence 9999999999999999999999998763 3478899999999999999999999999998764 3345555544
Q ss_pred ------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009011 378 ------IFILSKAGRVKDANEIFEDMKKQGVVPN-----VLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAP 446 (546)
Q Consensus 378 ------i~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 446 (546)
...|.+.|++++|...|+++.+.. |+ ...|..+...+.+.|++++|...++++.+.. +.+..+|..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 334 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 788999999999999999998753 44 4478888999999999999999999998763 456889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH------------HHHcC-----ChHHHHHHHHHH-HHCC--
Q 009011 447 LLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRG------------LIESG-----KLELACSFFEEM-ISKG-- 506 (546)
Q Consensus 447 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~------------~~~~g-----~~~~A~~~~~~m-~~~g-- 506 (546)
+..+|...|++++|...++++.+..+. +...+..+..+ |...| +.+++.+.++++ .+..
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999986554 56677666633 33334 556777777763 3221
Q ss_pred CCCCH-------HHHHHHHHHHHhcChhhHH
Q 009011 507 IVPYH-------STYKMLEEKLEKKRLGNAK 530 (546)
Q Consensus 507 ~~p~~-------~~~~~l~~~~~~~g~~~~a 530 (546)
..|+. ..+..+..+|...++.+..
T Consensus 414 ~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 414 NFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp GCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 11222 2555666666666655543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-21 Score=197.05 Aligned_cols=326 Identities=9% Similarity=0.018 Sum_probs=270.0
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhc
Q 009011 181 WELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD 260 (546)
Q Consensus 181 ~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 260 (546)
...+.+... . .+.+...+..+...+.+.|++++|+++|+++.+.. +.+..++..+..++...|++++|...|+++..
T Consensus 12 ~~~~~~~~~-~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 12 DLGTENLYF-Q-SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccc-c-cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 334444443 3 66778899999999999999999999999998753 66789999999999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHH------------HHHHhcCChhHHHHHHH
Q 009011 261 CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDV---VSYTCFI------------EHYCREKDFRKVDDTLK 325 (546)
Q Consensus 261 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~li------------~~~~~~g~~~~a~~l~~ 325 (546)
..|.+..++..+...|.+.|++++|...|+++.+.... +. ..+..+. ..+.+.|++++|...++
T Consensus 89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77888999999999999999999999999999986432 33 5555553 44889999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009011 326 EMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPN 405 (546)
Q Consensus 326 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 405 (546)
++.+.. +.+...+..+..+|.+.|++++|.++|+++.+.. +.+..++..+..+|...|++++|...|+++.+... .+
T Consensus 168 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~ 244 (450)
T 2y4t_A 168 KILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DH 244 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-Ch
Confidence 999874 3478889999999999999999999999998764 45789999999999999999999999999987532 24
Q ss_pred HHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009011 406 VLTYNTM------------ISSACARSEEENALKLLQKMEEDLCKPD-----CETYAPLLKMCCRKKRMKVLNFLLTHMF 468 (546)
Q Consensus 406 ~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 468 (546)
...+..+ ...+...|++++|..+|+++.+. .|+ ...+..+...+.+.|++++|...++++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4445444 78899999999999999999885 344 4578888999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 009011 469 KNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPY-HSTYKMLE 518 (546)
Q Consensus 469 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~ 518 (546)
+..+. +...|..+..+|...|++++|...++++.+. .|+ ...+..+.
T Consensus 323 ~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 370 (450)
T 2y4t_A 323 QMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE 370 (450)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred HhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 86543 7899999999999999999999999999964 455 44444444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.2e-22 Score=201.26 Aligned_cols=389 Identities=11% Similarity=0.034 Sum_probs=197.5
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVE 218 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 218 (546)
++.+.|+..|..+.... |+..+|..+..++.+.|++++|.+.|+++.+ . .+.+..++..+...+.+.|++++|+.
T Consensus 20 g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~l~~~~~~~g~~~~A~~ 94 (514)
T 2gw1_A 20 KKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALE-L-KPDYSKVLLRRASANEGLGKFADAMF 94 (514)
T ss_dssp SCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H-CSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhc-c-ChHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 57888888888887543 6788888888888888888888888888887 3 56677888888888888888888888
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--------------------------------------Hhhc
Q 009011 219 AFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFL--------------------------------------EFKD 260 (546)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~--------------------------------------~~~~ 260 (546)
.|+++.+.+ +++......++..+........+.+.+. ....
T Consensus 95 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (514)
T 2gw1_A 95 DLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKP 173 (514)
T ss_dssp HHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCC
T ss_pred HHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCH
Confidence 888887764 2222222222211111100000000000 0000
Q ss_pred C-------CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CCCHHHHHHHHHHHHhcCCh
Q 009011 261 C-------IPLSSQIFNILIHGWCK---TRKVDDAQKAMKEMFQ-----QGF--------SPDVVSYTCFIEHYCREKDF 317 (546)
Q Consensus 261 ~-------~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g~--------~~~~~~~~~li~~~~~~g~~ 317 (546)
. .+.+...+..+...+.. .|++++|...++++.+ ... +.+..++..+...+...|++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (514)
T 2gw1_A 174 ELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP 253 (514)
T ss_dssp CCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCH
Confidence 0 01112223333333332 4555555555555544 200 01223444444555555555
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 318 RKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDM 397 (546)
Q Consensus 318 ~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 397 (546)
++|...++++.+.... ...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...++++
T Consensus 254 ~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (514)
T 2gw1_A 254 LGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330 (514)
T ss_dssp HHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5555555555544322 4444455555555555555555555554432 223444455555555555555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC-
Q 009011 398 KKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVS-MD- 475 (546)
Q Consensus 398 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~- 475 (546)
.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.... ++
T Consensus 331 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 408 (514)
T 2gw1_A 331 KELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408 (514)
T ss_dssp HHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC
T ss_pred HHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH
Confidence 443221 33444445555555555555555555554432 223344444555555555555555555554442111 01
Q ss_pred ---HHHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Q 009011 476 ---AGTYASLVRGLIE---SGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAH 539 (546)
Q Consensus 476 ---~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 539 (546)
...+..+...+.. .|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...+
T Consensus 409 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 2244555555555 555555555555554432 12334444455555555555555555554443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-21 Score=196.67 Aligned_cols=388 Identities=12% Similarity=-0.000 Sum_probs=295.7
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhh--cCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 009011 113 KVVEALKGCGVSVSNSLVEQTLRRF--SNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDEL 190 (546)
Q Consensus 113 ~~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~ 190 (546)
..+....... |++..+..+...+ .++.+.|+..|..+... .+.+..+|..+..+|.+.|++++|.+.|+++...
T Consensus 27 ~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 102 (514)
T 2gw1_A 27 KYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLN 102 (514)
T ss_dssp HHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3444443333 5666655555544 36889999999988743 2456789999999999999999999999999883
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC-----------------------------------CC-------
Q 009011 191 NNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY-----------------------------------GV------- 228 (546)
Q Consensus 191 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------------------------------~~------- 228 (546)
.+.+......++..+........+.+.+..+... ..
T Consensus 103 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (514)
T 2gw1_A 103 --GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANY 180 (514)
T ss_dssp --SSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSC
T ss_pred --CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHh
Confidence 3444444444444444433333332222111100 00
Q ss_pred --CCCHHHHHHHHHHHHc---cCCHHHHHHHHHHhhc-----C--C-------CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 229 --EKDTRALSVLMDTLVK---GNSVEHAYKVFLEFKD-----C--I-------PLSSQIFNILIHGWCKTRKVDDAQKAM 289 (546)
Q Consensus 229 --~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~-----~--~-------~~~~~~~~~li~~~~~~g~~~~a~~~~ 289 (546)
+.+...+......+.. .|++++|...++++.. . . +.+..++..+...+...|++++|...+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 260 (514)
T 2gw1_A 181 DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDI 260 (514)
T ss_dssp CSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 1114444444444444 8999999999988765 2 2 344667889999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 009011 290 KEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLP 369 (546)
Q Consensus 290 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 369 (546)
+++.+.... ...+..+...|...|++++|...++.+.... +.+...+..+...+...|++++|...++++.+.. +.
T Consensus 261 ~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 336 (514)
T 2gw1_A 261 KKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PE 336 (514)
T ss_dssp HHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SS
T ss_pred HHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hh
Confidence 999887544 8889999999999999999999999998864 3366788899999999999999999999999875 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHH
Q 009011 370 DTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLC-KPD----CETY 444 (546)
Q Consensus 370 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~ 444 (546)
+..++..+...|...|++++|...++++.+... .+...+..+...+...|++++|...++++.+... .++ ...+
T Consensus 337 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 415 (514)
T 2gw1_A 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPL 415 (514)
T ss_dssp CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence 677888999999999999999999999987542 3677889999999999999999999999876421 111 3378
Q ss_pred HHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 009011 445 APLLKMCCR---KKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTY 514 (546)
Q Consensus 445 ~~ll~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 514 (546)
..+...+.. .|++++|...++.+.+.... +..++..+...+.+.|++++|...|+++.+.. |+....
T Consensus 416 ~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~ 485 (514)
T 2gw1_A 416 VGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESADLA--RTMEEK 485 (514)
T ss_dssp HHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSHHHH
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc--cccHHH
Confidence 889999999 99999999999999986544 78889999999999999999999999999764 655443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8.4e-20 Score=187.85 Aligned_cols=351 Identities=12% Similarity=0.090 Sum_probs=181.2
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVE 218 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 218 (546)
++.+.|+..|..+... .+.+..+|..+..+|.+.|++++|.+.|+++.+ . .+.+..++..+...+...|++++|++
T Consensus 39 g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~~~g~~~~A~~ 114 (537)
T 3fp2_A 39 KNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALE-I-KPDHSKALLRRASANESLGNFTDAMF 114 (537)
T ss_dssp TCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c-CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 5677788888887643 245677888888888888888888888888877 3 56677888888888888888888888
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHcc-----------------------------------------------------
Q 009011 219 AFRGMKKYGVEKDTRALSVLMDTLVKG----------------------------------------------------- 245 (546)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~ll~~~~~~----------------------------------------------------- 245 (546)
.|+.+.. .|+.... .+..+...
T Consensus 115 ~~~~~~~---~~~~~~~--~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (537)
T 3fp2_A 115 DLSVLSL---NGDFDGA--SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY 189 (537)
T ss_dssp HHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS
T ss_pred HHHHHhc---CCCCChH--HHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccc
Confidence 8864422 2221110 01111111
Q ss_pred --------------------------CCHHHHHHHHHHhhcCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 246 --------------------------NSVEHAYKVFLEFKDCIPLSSQ-------IFNILIHGWCKTRKVDDAQKAMKEM 292 (546)
Q Consensus 246 --------------------------g~~~~a~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~a~~~~~~m 292 (546)
|++++|..+++++....|.+.. ++..+...+...|++++|...+++.
T Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~ 269 (537)
T 3fp2_A 190 DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES 269 (537)
T ss_dssp CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 2344455555544443343322 2333444444555555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 009011 293 FQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTS 372 (546)
Q Consensus 293 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 372 (546)
.+.. |+...|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..
T Consensus 270 ~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 345 (537)
T 3fp2_A 270 INLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVY 345 (537)
T ss_dssp HHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSH
T ss_pred HhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 5432 234444455555555555555555555555442 1234445555555555555555555555554432 22334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHH
Q 009011 373 FYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDL-----CKPDCETYAPL 447 (546)
Q Consensus 373 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~l 447 (546)
++..+..+|...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. .......+...
T Consensus 346 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 424 (537)
T 3fp2_A 346 PYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGK 424 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH
Confidence 44555555555555555555555554432 1233444555555555555555555555544321 00011112222
Q ss_pred HHHHHhc----------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009011 448 LKMCCRK----------KRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 448 l~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (546)
...+... |++++|...++++.+..+. +...+..+...|.+.|++++|.+.|+++.+
T Consensus 425 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 425 ATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3334444 5555555555555543322 444555555555555555555555555554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.2e-19 Score=170.21 Aligned_cols=329 Identities=8% Similarity=-0.024 Sum_probs=203.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009011 161 PEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMD 240 (546)
Q Consensus 161 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 240 (546)
+..+..+...+...|++++|.+.|+++.+ . .+.+..++..+...+...|++++|++.|+++.+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~-~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVD-G-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34455566666666666666666666665 2 44455666666666666666666666666665542 334555566666
Q ss_pred HHHccCCHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009011 241 TLVKGNSVEHAYKVFLEFKDCIP---LSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDF 317 (546)
Q Consensus 241 ~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 317 (546)
++...|++++|...+++.....| .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 66666666666666666554444 33333333321100 00112224566667777
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 318 RKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDM 397 (546)
Q Consensus 318 ~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 397 (546)
++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...+++.
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777766653 2355666666777777777777777777776653 345666677777777777777777777776
Q ss_pred HHCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHH
Q 009011 398 KKQGVVPNVLTYN------------TMISSACARSEEENALKLLQKMEEDLCKPDC----ETYAPLLKMCCRKKRMKVLN 461 (546)
Q Consensus 398 ~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~ 461 (546)
.+... .+...+. .+...+...|++++|...++++.+.. +.+. ..+..+...+...|++++|.
T Consensus 215 ~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 65432 1222222 22556777888888888888887753 1222 23445667788888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 009011 462 FLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPY-HSTYKMLEEKLE 522 (546)
Q Consensus 462 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~ 522 (546)
..++++.+..+. +..+|..+...+...|++++|...|+++.+.. |+ ...+..+..+..
T Consensus 293 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 293 RICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN--ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChHHHHHHHHHHH
Confidence 888888875433 67788888888888888888888888888553 44 444555555443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-18 Score=167.94 Aligned_cols=318 Identities=11% Similarity=0.020 Sum_probs=244.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 009011 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGW 276 (546)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 276 (546)
...+..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|...++++....|.+...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4556677777888888888888888877653 456777777777777888888888888777766666777777788888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 009011 277 CKTRKVDDAQKAMKEMFQQGFS--PDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINE 354 (546)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 354 (546)
...|++++|...++++.+.... .+...+..+...+. ...+..+...+...|++++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHHH
Confidence 8888888888888777765320 02222222211110 1123345678899999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 355 ALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEE 434 (546)
Q Consensus 355 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 434 (546)
|.+.++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+
T Consensus 139 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 139 AITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999998875 4578899999999999999999999999999864 34788899999999999999999999999988
Q ss_pred CCCCCCHHHHH------------HHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCChHHHHHH
Q 009011 435 DLCKPDCETYA------------PLLKMCCRKKRMKVLNFLLTHMFKNDVSMDA----GTYASLVRGLIESGKLELACSF 498 (546)
Q Consensus 435 ~~~~p~~~~~~------------~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~ 498 (546)
.. +.+...+. .+...+.+.|++++|...++++.+.... +. ..+..+...+...|++++|...
T Consensus 217 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 64 33344333 2356689999999999999999986544 33 3355678899999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhhh
Q 009011 499 FEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKEQ 543 (546)
Q Consensus 499 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 543 (546)
+++..+.. +.+..++..+...+...|++++|.+.++...+..+.
T Consensus 295 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 295 CSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99999763 336788889999999999999999999998776543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-18 Score=178.72 Aligned_cols=372 Identities=10% Similarity=-0.001 Sum_probs=300.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDT 241 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 241 (546)
..|..+...+.+.|++++|.+.|+++.+ . .+.+..++..+...|.+.|++++|++.|+++.+.+ +.+..++..+..+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIE-L-DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHh-h-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4557788999999999999999999998 3 66789999999999999999999999999998865 6678899999999
Q ss_pred HHccCCHHHHHHHHHHhhcCCC-------------------------------------CCH------------------
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIP-------------------------------------LSS------------------ 266 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~-------------------------------------~~~------------------ 266 (546)
+...|++++|...|+.+..... ++.
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 9999999999998864421100 000
Q ss_pred ------------HHHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChhHH
Q 009011 267 ------------QIFNILIHGWCK--------TRKVDDAQKAMKEMFQQGFSPD------VVSYTCFIEHYCREKDFRKV 320 (546)
Q Consensus 267 ------------~~~~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~~~------~~~~~~li~~~~~~g~~~~a 320 (546)
.....+...+.. .|++++|..+++++.+...... ..++..+...+...|++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 022223322222 2589999999999987644311 23566777888899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 321 DDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ 400 (546)
Q Consensus 321 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 400 (546)
...++.+.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|.+.++++.+.
T Consensus 263 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 263 QVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 9999999986 4557888899999999999999999999998865 457888999999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-----CCCC
Q 009011 401 GVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKND-----VSMD 475 (546)
Q Consensus 401 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----~~~~ 475 (546)
.. .+...|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.. ....
T Consensus 340 ~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 340 NP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp CT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 43 356788999999999999999999999998874 4456788899999999999999999999987622 2223
Q ss_pred HHHHHHHHHHHHHc----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 476 AGTYASLVRGLIES----------GKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 476 ~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
...+......+... |++++|...|+++.+.. +.+...+..+...+...|+.++|.+.++...+...
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 44466667778888 99999999999998764 34567888999999999999999999999877644
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-18 Score=164.35 Aligned_cols=283 Identities=10% Similarity=0.022 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 009011 198 ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWC 277 (546)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 277 (546)
..+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|+.++|...++++....|.+..++..+...+.
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYL 101 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 334444444555555555555555554432 2333334444444445555555555555544444444555555555555
Q ss_pred hcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009011 278 KTR-KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEAL 356 (546)
Q Consensus 278 ~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 356 (546)
..| ++++|...|++....... +...|..+...+...|++++|...++++.+.... +...+..+...+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHH
Confidence 555 555555555555543322 3344445555555555555555555555444211 2333444555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009011 357 KVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQG--------VVPNVLTYNTMISSACARSEEENALKL 428 (546)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~li~~~~~~g~~~~A~~~ 428 (546)
+.++++.+.. +.+..++..+...+...|++++|...++++.+.. .+.....+..+...+...|++++|...
T Consensus 180 ~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5555555443 2344455555555555555555555555544311 012234444455555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009011 429 LQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGL 486 (546)
Q Consensus 429 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 486 (546)
+++..+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+..++
T Consensus 259 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 314 (330)
T 3hym_B 259 HRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHH
T ss_pred HHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHH
Confidence 55554432 223344444444444444444444444444443322 333444444433
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-18 Score=163.77 Aligned_cols=295 Identities=10% Similarity=-0.035 Sum_probs=249.1
Q ss_pred CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHH
Q 009011 156 GYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRAL 235 (546)
Q Consensus 156 g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 235 (546)
+...+...+..+...+...|++++|.++|+++.+. .+.+...+..++..+.+.|++++|+.+++++.+.. +.+...+
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 93 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSW 93 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHH
Confidence 44566677888999999999999999999999883 55666777778899999999999999999998754 5677888
Q ss_pred HHHHHHHHccC-CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009011 236 SVLMDTLVKGN-SVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCRE 314 (546)
Q Consensus 236 ~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 314 (546)
..+...+...| ++++|.+.|++.....|.+...|..+...+...|++++|...++++.+.... +...+..+...|...
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 99999999999 9999999999998878888999999999999999999999999999887543 456677789999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCC
Q 009011 315 KDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDD--------CLPDTSFYSSLIFILSKAGR 386 (546)
Q Consensus 315 g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~ 386 (546)
|++++|.+.+++..+.. +.+...+..+...+...|++++|...++++.+.. .+....++..+..+|.+.|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 99999999999998874 3467889999999999999999999999987632 13346788999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCh
Q 009011 387 VKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMC-CRKKRM 457 (546)
Q Consensus 387 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~ 457 (546)
+++|...+++..+... .+...+..+...+...|++++|.+.++++.+.. +.+...+..+..++ ...|+.
T Consensus 252 ~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 252 YAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 9999999999987643 367889999999999999999999999998764 44667777777766 344443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-18 Score=168.95 Aligned_cols=287 Identities=11% Similarity=0.033 Sum_probs=161.3
Q ss_pred cCChHHHHH-HHHHhhhCCC-CC--CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 210 GGRYDDAVE-AFRGMKKYGV-EK--DTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDA 285 (546)
Q Consensus 210 ~g~~~~A~~-~~~~m~~~~~-~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 285 (546)
.|++++|++ .|++..+... .| +...+..+...+...|++++|...|+++....|.+..++..+...+.+.|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 467777777 6665543211 11 2345666677777777777777777777766667777777777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHhcC
Q 009011 286 QKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTI---------------VMHALGKAK 350 (546)
Q Consensus 286 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~---------------li~~~~~~g 350 (546)
...|+++.+.... +..++..+...|...|++++|.+.++++...... +...+.. .+..+...|
T Consensus 118 ~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 118 ISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 7777777765432 5667777777777777777777777777765322 1111110 122222555
Q ss_pred CHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 351 QINEALKVYEKMKSDDCL-PDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLL 429 (546)
Q Consensus 351 ~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 429 (546)
++++|...++++.+.... ++..++..+...|.+.|++++|...++++.+.. +.+...|..+...+...|++++|...+
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666665554311 135555556666666666666666666555432 123455555556666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHHcCChHHHHHHH
Q 009011 430 QKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSM----------DAGTYASLVRGLIESGKLELACSFF 499 (546)
Q Consensus 430 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~~~ 499 (546)
+++.+.. +.+..++..+...|.+.|++++|...++++.+..+.. ...+|..+..+|...|++++|..++
T Consensus 275 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 275 RRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 6655542 2334555555555556666666666555555422111 1455555555555555555555554
Q ss_pred H
Q 009011 500 E 500 (546)
Q Consensus 500 ~ 500 (546)
+
T Consensus 354 ~ 354 (368)
T 1fch_A 354 A 354 (368)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.5e-15 Score=148.59 Aligned_cols=337 Identities=13% Similarity=0.073 Sum_probs=225.7
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc----CCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----c
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGK----SKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVR----G 210 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~----~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~----~ 210 (546)
.+.+.|+..|..+... -+...+..|...|.. .+++++|.+.|++..+.+ +...+..+...|.. .
T Consensus 57 ~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSC
T ss_pred cCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCC
Confidence 4666677777766543 345666677777776 777777777777776532 45566666666666 6
Q ss_pred CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCH
Q 009011 211 GRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVK----GNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCK----TRKV 282 (546)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 282 (546)
+++++|++.|++..+.| +...+..+...|.. .++.++|.+.|++..+. .+...+..|...|.. .++.
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCH
Confidence 67777777777776644 45566666666665 56777777777766542 356667777777776 6777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHH
Q 009011 283 DDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR----EKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGK----AKQINE 354 (546)
Q Consensus 283 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~ 354 (546)
++|.+.|++..+.| +...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .++.++
T Consensus 204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence 77777777777653 45566666666665 667777777777776654 44455566666666 677777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 009011 355 ALKVYEKMKSDDCLPDTSFYSSLIFILSKA-----GRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARS---EEENAL 426 (546)
Q Consensus 355 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~ 426 (546)
|..+|++..+.| +...+..+...|... +++++|...|++..+.| +...+..+...|...| +.++|.
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 777777776654 445566666666665 67777777777777653 4455666666666545 667777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHH
Q 009011 427 KLLQKMEEDLCKPDCETYAPLLKMCCR----KKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIE----SGKLELACSF 498 (546)
Q Consensus 427 ~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~ 498 (546)
++|++..+.| +...+..+...|.. .++.++|...+++..+.+ +...+..+...|.+ .+++++|...
T Consensus 352 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 352 EWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 7777777653 45666666666666 677777777777777654 45666667777766 6777777777
Q ss_pred HHHHHHCC
Q 009011 499 FEEMISKG 506 (546)
Q Consensus 499 ~~~m~~~g 506 (546)
|++..+.+
T Consensus 426 ~~~A~~~~ 433 (490)
T 2xm6_A 426 FDTASTND 433 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHCC
Confidence 77777665
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=7e-18 Score=164.56 Aligned_cols=292 Identities=9% Similarity=-0.017 Sum_probs=224.5
Q ss_pred HcCCChHHHHH-HHHHHHhhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCH
Q 009011 172 GKSKKFCLMWE-LVKEMDELNNGYV--SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSV 248 (546)
Q Consensus 172 ~~~~~~~~a~~-l~~~m~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 248 (546)
...|++++|.+ .|++.....+..+ +...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34577788877 7775544221111 34557778888889999999999999988764 56778888888889999999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHh
Q 009011 249 EHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTC---------------FIEHYCR 313 (546)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~---------------li~~~~~ 313 (546)
++|.+.++++....|.+..++..+...|...|++++|...++++...... +...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 99999998887777778888999999999999999999999998876433 2222211 2334448
Q ss_pred cCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009011 314 EKDFRKVDDTLKEMQEKGCKP-SVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANE 392 (546)
Q Consensus 314 ~g~~~~a~~l~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 392 (546)
.|++++|...++++.+..... +..++..+...+.+.|++++|...++++.+.. +.+..++..+...|.+.|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 899999999999998864321 57889999999999999999999999998764 4468899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCChHHHHH
Q 009011 393 IFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKP----------DCETYAPLLKMCCRKKRMKVLNF 462 (546)
Q Consensus 393 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----------~~~~~~~ll~~~~~~g~~~~a~~ 462 (546)
.++++.+.. +.+...+..+..++.+.|++++|...++++.+..... ...+|..+..++...|+.++|..
T Consensus 273 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 273 AYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999998754 2367889999999999999999999999987642111 16789999999999999999998
Q ss_pred HHHHH
Q 009011 463 LLTHM 467 (546)
Q Consensus 463 ~~~~m 467 (546)
++++.
T Consensus 352 ~~~~~ 356 (368)
T 1fch_A 352 ADARD 356 (368)
T ss_dssp HHTTC
T ss_pred hHHHH
Confidence 87643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-14 Score=144.60 Aligned_cols=352 Identities=13% Similarity=0.037 Sum_probs=296.4
Q ss_pred CHHHHHHHHHHHHc----CCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCC
Q 009011 160 TPEMYNTMVDVLGK----SKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVR----GGRYDDAVEAFRGMKKYGVEKD 231 (546)
Q Consensus 160 ~~~~~~~ll~~~~~----~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~ 231 (546)
+...+..|...|.. .+++++|.+.|+...+.+ +...+..+...|.. .+++++|++.|++..+.| +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 55666777777777 899999999999998743 46788888889988 899999999999998754 6
Q ss_pred HHHHHHHHHHHHc----cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 009011 232 TRALSVLMDTLVK----GNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCK----TRKVDDAQKAMKEMFQQGFSPDVVS 303 (546)
Q Consensus 232 ~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~ 303 (546)
...+..|...|.. .++.++|.+.|++..+. .+...+..|...|.. .++.++|.+.|++..+.| +...
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 6777778888887 78999999999887653 467788889888887 789999999999998874 6788
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 009011 304 YTCFIEHYCR----EKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGK----AKQINEALKVYEKMKSDDCLPDTSFYS 375 (546)
Q Consensus 304 ~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 375 (546)
+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .+++++|..+|++..+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 8888888888 899999999999998876 56677788888876 789999999999998875 556777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009011 376 SLIFILSK----AGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACAR-----SEEENALKLLQKMEEDLCKPDCETYAP 446 (546)
Q Consensus 376 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~ 446 (546)
.+...|.. .+++++|.+.|++..+.| +...+..+...|... ++.++|..++++..+.| +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 77778877 899999999999998764 566777788888877 89999999999998875 4567777
Q ss_pred HHHHHHhcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009011 447 LLKMCCRKK---RMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIE----SGKLELACSFFEEMISKGIVPYHSTYKMLEE 519 (546)
Q Consensus 447 ll~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 519 (546)
+...|...| +.++|..++++..+.+ +...+..+...|.. .+++++|...|++..+.| +...+..+..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777766 7899999999999874 67888999999988 899999999999999886 5677778888
Q ss_pred HHHh----cChhhHHHHHHHHHHHHh
Q 009011 520 KLEK----KRLGNAKERINKLLAHAK 541 (546)
Q Consensus 520 ~~~~----~g~~~~a~~~~~~m~~~~ 541 (546)
.|.. .++.++|.+.++...+.+
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 8887 789999999999988766
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.8e-18 Score=163.79 Aligned_cols=268 Identities=9% Similarity=-0.070 Sum_probs=186.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009011 265 SSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMH 344 (546)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~ 344 (546)
+...+..+...+.+.|++++|...|+++.+..+. +..+|..+...|...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3444666777777777777777777777665432 56677777777777777777777777777653 235667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 009011 345 ALGKAKQINEALKVYEKMKSDDCL---------PDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVV-PNVLTYNTMIS 414 (546)
Q Consensus 345 ~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~ 414 (546)
+|...|++++|...++++.+.... .....+..+...+.+.|++++|.+.++++.+.... .+..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 777777777777777777654210 01223344567788888888888888888765422 15778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 009011 415 SACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLEL 494 (546)
Q Consensus 415 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 494 (546)
.+...|++++|.+.++++.+.. +.+..++..+..+|...|++++|...++++.+..+. +..+|..+..+|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHH
Confidence 8888888888888888887764 446778888888888888888888888888876544 57788888888888899999
Q ss_pred HHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcChhhHHHHHHHH
Q 009011 495 ACSFFEEMISKGIV-----------PYHSTYKMLEEKLEKKRLGNAKERINKL 536 (546)
Q Consensus 495 A~~~~~~m~~~g~~-----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 536 (546)
|...|+++.+.... .+..+|..+..++...|+.+.+.++.+.
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 98888888754210 1256778888888888888888776553
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.5e-15 Score=151.05 Aligned_cols=407 Identities=12% Similarity=0.068 Sum_probs=288.7
Q ss_pred CCHHHHHHHHHhh-cCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 009011 125 VSNSLVEQTLRRF-SNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTI 203 (546)
Q Consensus 125 ~~~~~~~~~l~~~-~~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~l 203 (546)
-+...+..++... .++.+.|...|..+.. -++.+...|...+..+.+.|+++.|.++|+++.. ..|+...|...
T Consensus 11 ~~~~~w~~l~~~~~~~~~~~a~~~~e~al~--~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~---~~p~~~lw~~~ 85 (530)
T 2ooe_A 11 YDLDAWSILIREAQNQPIDKARKTYERLVA--QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM---KVLHIDLWKCY 85 (530)
T ss_dssp TCHHHHHHHHHHHHSSCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---TCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCChHHHHHH
Confidence 3556666666643 3577888888888873 4566778888999999999999999999999887 33477777766
Q ss_pred HHHH-HhcCChHHHHH----HHHHhhh-CCCC-CCHHHHHHHHHHHHc---------cCCHHHHHHHHHHhhcCCCCC--
Q 009011 204 MRRL-VRGGRYDDAVE----AFRGMKK-YGVE-KDTRALSVLMDTLVK---------GNSVEHAYKVFLEFKDCIPLS-- 265 (546)
Q Consensus 204 i~~~-~~~g~~~~A~~----~~~~m~~-~~~~-~~~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~-- 265 (546)
+... ...|+.++|.+ +|++..+ .|.. ++...|...+....+ .|+++.|..+|++... .|.+
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~ 164 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINI 164 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhH
Confidence 6533 34577766655 6666644 3443 345666666665544 6788899999988876 4433
Q ss_pred HHHHHHHHHHHH-------------hcCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHhc-
Q 009011 266 SQIFNILIHGWC-------------KTRKVDDAQKAMKEMF------QQG---FSPD--------VVSYTCFIEHYCRE- 314 (546)
Q Consensus 266 ~~~~~~li~~~~-------------~~g~~~~a~~~~~~m~------~~g---~~~~--------~~~~~~li~~~~~~- 314 (546)
...|........ +.++++.|..++.++. +.. +.|+ ...|...+......
T Consensus 165 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~ 244 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP 244 (530)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCC
Confidence 234444333221 2345666776666532 111 2333 24555554333222
Q ss_pred ---CCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCCHHH
Q 009011 315 ---KDF----RKVDDTLKEMQEKGCKPSVITYTIVMHALGK-------AKQIN-------EALKVYEKMKSDDCLPDTSF 373 (546)
Q Consensus 315 ---g~~----~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~ 373 (546)
++. +++..+|++..... +-+...|...+..+.+ .|+++ +|..+|++..+.-.+.+...
T Consensus 245 ~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l 323 (530)
T 2ooe_A 245 LRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL 323 (530)
T ss_dssp SCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred ccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence 232 36778888888763 3467788888887775 78887 89999999987323456889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 009011 374 YSSLIFILSKAGRVKDANEIFEDMKKQGVVPN-V-LTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKM- 450 (546)
Q Consensus 374 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~- 450 (546)
|..++..+.+.|++++|..+|+++.+. .|+ . ..|...+..+.+.|+.++|.++|++..+.. +.+...|......
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHH
Confidence 999999999999999999999999985 343 3 588988998899999999999999998763 2233333332222
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC--HHHHHHHHHHHHhcChh
Q 009011 451 CCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGI-VPY--HSTYKMLEEKLEKKRLG 527 (546)
Q Consensus 451 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~--~~~~~~l~~~~~~~g~~ 527 (546)
+...|+.++|..+|+...+..+. +...|..++..+.+.|+.++|..+|++....+. .|+ ...|...+......|+.
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 34689999999999999886543 688999999999999999999999999998742 332 45777888888888999
Q ss_pred hHHHHHHHHHHHHhh
Q 009011 528 NAKERINKLLAHAKE 542 (546)
Q Consensus 528 ~~a~~~~~~m~~~~~ 542 (546)
+.+.++.+++.+.-+
T Consensus 480 ~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 480 ASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHCc
Confidence 999999998876544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.6e-17 Score=159.45 Aligned_cols=233 Identities=9% Similarity=-0.032 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009011 161 PEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMD 240 (546)
Q Consensus 161 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 240 (546)
...+..+...+.+.|++++|.+.|+++.+ . .+.+..++..+...+.+.|++++|++.|+++.+.. +.+..++..+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAIL-Q-DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHH-h-CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34466677777777777777777777776 2 45566777777777777777777777777776543 445666666666
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 009011 241 TLVKGNSVEHAYKVFLEFKDCIPLS----------SQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFS-PDVVSYTCFIE 309 (546)
Q Consensus 241 ~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~ 309 (546)
++...|++++|.+.++++....|.+ ...+..+...+.+.|++++|...++++.+.... .+..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 6677777777776666654422211 112223355555555555555555555554221 13445555555
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009011 310 HYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKD 389 (546)
Q Consensus 310 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 389 (546)
.|...|++++|.+.++++.+.. +.+..++..+..+|.+.|++++|...|+++.+.. +.+..++..+..+|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 5555555555555555555442 2234455555555555555555555555555432 2234455555555555555555
Q ss_pred HHHHHHHHH
Q 009011 390 ANEIFEDMK 398 (546)
Q Consensus 390 A~~~~~~~~ 398 (546)
|...|+++.
T Consensus 300 A~~~~~~al 308 (365)
T 4eqf_A 300 AVSNFLTAL 308 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=6.2e-17 Score=154.84 Aligned_cols=277 Identities=10% Similarity=0.005 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDT 241 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 241 (546)
..+-.+...+...|++++|..+|+++.+. .+.+..++..+...+.+.|++++|++.|+++.+.. +.+..++..+..+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 34556667777777777777777777762 45566777777777777777777777777776643 4456666666677
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHhcCChhH
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCF-IE-HYCREKDFRK 319 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l-i~-~~~~~g~~~~ 319 (546)
+...|++++|.+.++++....|.+...+..+.... |+......+ .. .+...|++++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHH
Confidence 77777777777777666554444433333330000 000000001 11 1334445555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 320 VDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKK 399 (546)
Q Consensus 320 a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 399 (546)
|.+.++++.+... .+...+..+...+.+.|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 157 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555444321 134445555555555555555555555554432 22344555555555555555555555555544
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009011 400 QGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKP-----------DCETYAPLLKMCCRKKRMKVLNFLLTH 466 (546)
Q Consensus 400 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~~~~~ll~~~~~~g~~~~a~~~~~~ 466 (546)
.. +.+...+..+...+...|++++|.+.++++.+..... +..++..+..++...|+.++|..++++
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 32 1234455555555555555555555555554432110 244555555555555555555555543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-16 Score=151.03 Aligned_cols=279 Identities=8% Similarity=-0.002 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 009011 198 ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWC 277 (546)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 277 (546)
..+..+...+...|++++|+.+|+++.+.. +.+..++..+..++...|++++|.+.++++....|.+..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 344555666777777777777777776543 4456666666667777777777777777666655666666777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH-HH-HHHhcCCHHHH
Q 009011 278 KTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIV-MH-ALGKAKQINEA 355 (546)
Q Consensus 278 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l-i~-~~~~~g~~~~a 355 (546)
..|++++|.+.++++...... +...+..+... .|+......+ .. .+...|++++|
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHH
Confidence 777777777777766655322 11111111000 0111111122 22 36788999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 356 LKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEED 435 (546)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 435 (546)
.+.++++.+.. +.+..++..+...|.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999998875 4478899999999999999999999999998754 236788999999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009011 436 LCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSM-----------DAGTYASLVRGLIESGKLELACSFFEEMI 503 (546)
Q Consensus 436 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 503 (546)
. +.+..++..+...+...|++++|...++++.+..... +...|..+..++.+.|++++|..++++..
T Consensus 236 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 236 N-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4 4567889999999999999999999999998854332 47889999999999999999999987543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-18 Score=177.90 Aligned_cols=117 Identities=14% Similarity=0.313 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009011 232 TRALSVLMDTLVKGNSVEHAYKVFLEFKD----CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCF 307 (546)
Q Consensus 232 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 307 (546)
..||+++|++||+.|++++|.++|.+|.+ +..||..+||+||++||+.|++++|.++|++|.+.|+.||.+|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45666666666666666666666655432 45666666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009011 308 IEHYCREKDF-RKVDDTLKEMQEKGCKPSVITYTIVMHALGK 348 (546)
Q Consensus 308 i~~~~~~g~~-~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~ 348 (546)
|.++|+.|+. ++|.++|++|.+.|+.||..+|+.++.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 6666666653 5566666666666666666666666554433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-18 Score=176.64 Aligned_cols=152 Identities=13% Similarity=0.079 Sum_probs=121.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 009011 369 PDTSFYSSLIFILSKAGRVKDANEIFEDMKK---QGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYA 445 (546)
Q Consensus 369 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 445 (546)
.-..+|+++|++||+.|++++|.++|++|.+ .|+.||+.|||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3457899999999999999999999988764 4788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC------HHHHHHHH
Q 009011 446 PLLKMCCRKKRM-KVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPY------HSTYKMLE 518 (546)
Q Consensus 446 ~ll~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~l~ 518 (546)
++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+.+ +++..+++ ..++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 999999999874 788899999999999999999999887665543 44444444 3355554 34444555
Q ss_pred HHHHhcC
Q 009011 519 EKLEKKR 525 (546)
Q Consensus 519 ~~~~~~g 525 (546)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 5554443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=6.1e-17 Score=155.43 Aligned_cols=280 Identities=10% Similarity=0.075 Sum_probs=128.9
Q ss_pred ChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009011 140 DLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEA 219 (546)
Q Consensus 140 ~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 219 (546)
+.+.|..++... +++.+|..|..++.+.|++++|++.|.+. ++..+|..++..+...|++++|+..
T Consensus 18 ~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 18 NLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 456677777766 33468999999999999999999999653 3466888889999999999999997
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009011 220 FRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSP 299 (546)
Q Consensus 220 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 299 (546)
++..++. .+++.+.+.++.+|.+.|+++++.++++ +|+..+|+.+...|...|++++|...|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 7777663 5567888899999999999999887774 356679999999999999999999999977
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009011 300 DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIF 379 (546)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 379 (546)
..|..++.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+ ..++.-...++.
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~ 215 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELIN 215 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHH
Confidence 36889999999999999999999988 27889999999999999999996555432 223334556889
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCC------CHHHHHHHHHHHH
Q 009011 380 ILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEE-DLCKP------DCETYAPLLKMCC 452 (546)
Q Consensus 380 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p------~~~~~~~ll~~~~ 452 (546)
.|.+.|++++|..+++...... .-....|+-+..+|++- ++++..+.++.... .+++| +...|.-+...|.
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888654 34567788887777775 55555555443322 12222 3355777777788
Q ss_pred hcCChHHHHHH
Q 009011 453 RKKRMKVLNFL 463 (546)
Q Consensus 453 ~~g~~~~a~~~ 463 (546)
..++++.|...
T Consensus 294 ~~~e~d~A~~t 304 (449)
T 1b89_A 294 KYEEYDNAIIT 304 (449)
T ss_dssp HTTCHHHHHHH
T ss_pred hhchHHHHHHH
Confidence 88888877653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.2e-15 Score=140.16 Aligned_cols=251 Identities=14% Similarity=0.147 Sum_probs=128.0
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 009011 205 RRLVRGGRYDDAVEAFRGMKKYGVEKDT--RALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKV 282 (546)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 282 (546)
+.....|++..|+..++..... .|+. .....+..+|...|+++.|...++. ..+++..++..+...+...|+.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcH
Confidence 3344556666666666554322 2222 2334445556666666655543322 2334445555555666666666
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009011 283 DDAQKAMKEMFQQGFSP-DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEK 361 (546)
Q Consensus 283 ~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 361 (546)
++|.+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666655544333 233444444555566666666665554 23455555555556666666666666666
Q ss_pred HHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 362 MKSDDCLPDTSF---YSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCK 438 (546)
Q Consensus 362 ~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 438 (546)
+.+.. |+... ....+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.+.. +
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 55543 22111 1112222333355666666666555532 2345555555555566666666666666555542 3
Q ss_pred CCHHHHHHHHHHHHhcCChHH-HHHHHHHHHhC
Q 009011 439 PDCETYAPLLKMCCRKKRMKV-LNFLLTHMFKN 470 (546)
Q Consensus 439 p~~~~~~~ll~~~~~~g~~~~-a~~~~~~m~~~ 470 (546)
-+..++..++..+...|+.++ +..+++++.+.
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 344555555555555555543 34555555543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.2e-15 Score=138.74 Aligned_cols=272 Identities=14% Similarity=0.090 Sum_probs=215.2
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLS-SQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFR 318 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 318 (546)
.-....|++..|...++.+....|.+ ......+.++|...|++++|...++.. -.|+..++..+...+...|+.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 34556799999999988776533333 245567789999999999999866542 3467788889999999999999
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 319 KVDDTLKEMQEKGCKP-SVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDM 397 (546)
Q Consensus 319 ~a~~l~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 397 (546)
+|++.++++...+..| +...+..+...+...|++++|++.+++ +.+..++..++..|.+.|++++|.+.++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999887545 566677777899999999999999987 467889999999999999999999999999
Q ss_pred HHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 009011 398 KKQGVVPNVLTY---NTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSM 474 (546)
Q Consensus 398 ~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 474 (546)
.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.+..+.
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~- 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG- 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 8764 554322 123344445689999999999999873 668889999999999999999999999999997665
Q ss_pred CHHHHHHHHHHHHHcCChHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHH
Q 009011 475 DAGTYASLVRGLIESGKLEL-ACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAK 530 (546)
Q Consensus 475 ~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 530 (546)
+..++..++..+...|+.++ +.++++++.+.. |+.... .+...+.+.++++
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~~---~d~~~~~~~fd~~ 284 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPFI---KEYRAKENDFDRL 284 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHH---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChHH---HHHHHHHHHHHHH
Confidence 88899999999999999976 578999988654 655432 2334444444443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=153.53 Aligned_cols=284 Identities=12% Similarity=0.110 Sum_probs=134.0
Q ss_pred HcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 009011 172 GKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHA 251 (546)
Q Consensus 172 ~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 251 (546)
-+.|++++|.+.++++.. +.+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|
T Consensus 14 ~~~~~ld~A~~fae~~~~-------~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE-------PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHH
Confidence 367889999999998843 35999999999999999999999965 36778999999999999999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 009011 252 YKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKG 331 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g 331 (546)
...++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+
T Consensus 81 i~yl~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 81 VKYLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 9988777664 4457889999999999999999998875 267789999999999999999999999977
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009011 332 CKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNT 411 (546)
Q Consensus 332 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 411 (546)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHH
Confidence 26899999999999999999999988 27899999999999999999996655542 234444567
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCC------CHHHHHHHHH
Q 009011 412 MISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK-NDVSM------DAGTYASLVR 484 (546)
Q Consensus 412 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~~~------~~~~~~~li~ 484 (546)
++..|.+.|++++|..+++...... +-....|+-+.-+|++- ++++..+.++.... -+++| +...|.-++-
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999998765 55667777776666653 34444433332222 12222 3457889999
Q ss_pred HHHHcCChHHHHHH
Q 009011 485 GLIESGKLELACSF 498 (546)
Q Consensus 485 ~~~~~g~~~~A~~~ 498 (546)
.|...++++.|...
T Consensus 291 ly~~~~e~d~A~~t 304 (449)
T 1b89_A 291 LYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHhhchHHHHHHH
Confidence 99999999988763
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-13 Score=139.52 Aligned_cols=369 Identities=11% Similarity=-0.025 Sum_probs=248.2
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhh-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC----
Q 009011 158 MHTPEMYNTMVDVLGKSKKFCLMWELVKEMDEL-------NNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY---- 226 (546)
Q Consensus 158 ~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 226 (546)
......||.|..++...|++++|++.|++..+. ...+....+|+.+...|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344567999999999999999999999876542 113456788999999999999999999999887541
Q ss_pred -C--CCCCHHHHHHHHHHHHc--cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCC
Q 009011 227 -G--VEKDTRALSVLMDTLVK--GNSVEHAYKVFLEFKDCIPLSSQIFNILIHGW---CKTRKVDDAQKAMKEMFQQGFS 298 (546)
Q Consensus 227 -~--~~~~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~g~~ 298 (546)
+ ......++.....++.. .+++++|.+.|++.....|.++..+..+...+ ...++.++|.+.+++..+..+.
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 1 12235666666555544 45789999999998877778888877766664 4557778899999888776433
Q ss_pred CCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 009011 299 PDVVSYTCFIEHYCR----EKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFY 374 (546)
Q Consensus 299 ~~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 374 (546)
+...+..+...+.. .|++++|.+.+++..... +.+...+..+...|...|++++|...+++..+.. +.+..++
T Consensus 208 -~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 208 -NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp -CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred -chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 55666655555444 467889999999988774 3367788899999999999999999999998865 3466677
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 375 SSLIFILSKA-------------------GRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEED 435 (546)
Q Consensus 375 ~~li~~~~~~-------------------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 435 (546)
..+..+|... +.+++|...+++..+... .+...+..+...+...|++++|.+.|++..+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 7666665432 235677778887776432 34567788888999999999999999999886
Q ss_pred CCCCCHH--HHHHHHH-HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 009011 436 LCKPDCE--TYAPLLK-MCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHS 512 (546)
Q Consensus 436 ~~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 512 (546)
...+... .+..+.. .....|+.++|...+++..+.... ..... +....+.++++...+.. +.+..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~--~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~ 431 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK--SREKE---------KMKDKLQKIAKMRLSKN-GADSE 431 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC--CHHHH---------HHHHHHHHHHHHHHHHC-C-CTT
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHHHH---------HHHHHHHHHHHHHHHhC-CCCHH
Confidence 4332221 1222222 245688999999999998875433 22111 12233444555555433 33456
Q ss_pred HHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 513 TYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 513 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
+|..+...+...|+.++|.+.+++.-+.+.
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 777888888888888888888887765543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-12 Score=140.20 Aligned_cols=288 Identities=13% Similarity=0.136 Sum_probs=145.8
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 204 MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVD 283 (546)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 283 (546)
...+...|.+++|.++|++.. -.....+.++ ...+++++|.++.+++ .+..+|..+..++.+.|+++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHH
Confidence 445556666666666666641 1111122222 1445566666655544 23555666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 284 DAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMK 363 (546)
Q Consensus 284 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 363 (546)
+|.+.|.+. -|...|..++.++.+.|++++|.+.+....+.. ++....+.++.+|++.+++++...+.
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---- 1190 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---- 1190 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----
Confidence 666665443 245555556666666666666666665544432 12112223555555555555322221
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------
Q 009011 364 SDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEED-------- 435 (546)
Q Consensus 364 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------- 435 (546)
+ .++...|..+...|...|++++|..+|... ..|..+..++++.|++++|.+.+++....
T Consensus 1191 ~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1191 N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCF 1258 (1630)
T ss_pred h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHH
Confidence 1 123344444555555555555555555543 24555555555555555555555443110
Q ss_pred ----------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CChHHHHH
Q 009011 436 ----------------LCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIES--GKLELACS 497 (546)
Q Consensus 436 ----------------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~ 497 (546)
++..+...+..++..|.+.|.+++|..+++.....+ .-....|+-+...|++. ++..++.+
T Consensus 1259 acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred HHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 012234455566666666677777777666665543 22344555555555442 33444444
Q ss_pred HHHHHHHCCCCC------CHHHHHHHHHHHHhcChhhHHH
Q 009011 498 FFEEMISKGIVP------YHSTYKMLEEKLEKKRLGNAKE 531 (546)
Q Consensus 498 ~~~~m~~~g~~p------~~~~~~~l~~~~~~~g~~~~a~ 531 (546)
+|..-. ++.| +...|..++-.|.+.|+++.|.
T Consensus 1338 ~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1338 LFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 444322 2222 3445666666677777777655
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-12 Score=132.26 Aligned_cols=384 Identities=9% Similarity=0.032 Sum_probs=271.6
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhh--cCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-HcCCChHHHHH----HHHH
Q 009011 114 VVEALKGCGVSVSNSLVEQTLRRF--SNDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVL-GKSKKFCLMWE----LVKE 186 (546)
Q Consensus 114 ~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~-~~~~~~~~a~~----l~~~ 186 (546)
+++.+.. -.+-+...+....... .++.+.|..+|..+... .|+...|...+... ...|+.+.|.+ +|+.
T Consensus 34 ~~e~al~-~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~ 109 (530)
T 2ooe_A 34 TYERLVA-QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDF 109 (530)
T ss_dssp HHHHHHT-TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH
T ss_pred HHHHHHH-HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHH
Confidence 4444333 2445666777666654 35788999999998643 36788888777533 45677777665 7777
Q ss_pred HHhh-CCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH-------------H
Q 009011 187 MDEL-NNGYVSLATMSTIMRRLVR---------GGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTL-------------V 243 (546)
Q Consensus 187 m~~~-~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~-------------~ 243 (546)
.... +..+.+...|...+....+ .|++++|..+|++..+.........|....... .
T Consensus 110 al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~ 189 (530)
T 2ooe_A 110 ALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIED 189 (530)
T ss_dssp HHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHT
T ss_pred HHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHH
Confidence 7653 2134577888888877655 789999999999998732111123333222211 1
Q ss_pred ccCCHHHHHHHHHHh------hcC----CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCC
Q 009011 244 KGNSVEHAYKVFLEF------KDC----IPLS--------SQIFNILIHGWCKT----RKV----DDAQKAMKEMFQQGF 297 (546)
Q Consensus 244 ~~g~~~~a~~~~~~~------~~~----~~~~--------~~~~~~li~~~~~~----g~~----~~a~~~~~~m~~~g~ 297 (546)
..+++..|..++..+ .+. ++|+ ...|...+...... ++. +.+..+|++.....+
T Consensus 190 ~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p 269 (530)
T 2ooe_A 190 RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG 269 (530)
T ss_dssp THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC
Confidence 235567777766542 111 3444 24566665443332 232 477788998887633
Q ss_pred CCCHHHHHHHHHHHHh-------cCChh-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 298 SPDVVSYTCFIEHYCR-------EKDFR-------KVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMK 363 (546)
Q Consensus 298 ~~~~~~~~~li~~~~~-------~g~~~-------~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 363 (546)
-+...|..+...+.+ .|+++ +|..++++..+.-.+-+...|..++..+.+.|++++|..+|+++.
T Consensus 270 -~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al 348 (530)
T 2ooe_A 270 -HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 348 (530)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 367888888887775 79987 899999998863234468889999999999999999999999999
Q ss_pred hCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009011 364 SDDCLPD-TSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISS-ACARSEEENALKLLQKMEEDLCKPDC 441 (546)
Q Consensus 364 ~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~ 441 (546)
+.. +.+ ..+|...+..+.+.|++++|.++|++..+... .+...|...... +...|+.++|..+|+...+.. +-+.
T Consensus 349 ~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~ 425 (530)
T 2ooe_A 349 AIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIP 425 (530)
T ss_dssp HSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCH
T ss_pred Ccc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCH
Confidence 863 223 35888899999999999999999999987532 233333332222 346899999999999998763 3467
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 442 ETYAPLLKMCCRKKRMKVLNFLLTHMFKNDV-SM--DAGTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 442 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
..+..++..+.+.|+.++|..+|++....+. .| ....|...+......|+.+.+..+++++.+.
T Consensus 426 ~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 426 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888999999999999999999999998643 22 3568888899889999999999999998764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-12 Score=138.24 Aligned_cols=353 Identities=12% Similarity=0.109 Sum_probs=249.1
Q ss_pred CCHHHHHHHHHhhcCChhHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCC-CCCCHHHHHH
Q 009011 125 VSNSLVEQTLRRFSNDLTPAFGFFTWAKT-QTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNN-GYVSLATMST 202 (546)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~a~~~f~~~~~-~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~-~~~~~~~~~~ 202 (546)
-++++|..||... ...-..+.+|... ...-..+++--...+..|...|.+.+|+++++++.-... ...+...-+.
T Consensus 951 ~d~~lW~~vl~~~---n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lqnl 1027 (1630)
T 1xi4_A 951 KDPELWGSVLLES---NPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNL 1027 (1630)
T ss_pred cCHHHHHHHhcCC---cHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHH
Confidence 4666777776432 1233346666541 122245666667899999999999999999999985221 1135566667
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 009011 203 IMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKV 282 (546)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 282 (546)
++....+. +..+..++.+++... + ...+...+...|.+++|..+|++.. ......+.++. ..|++
T Consensus 1028 Li~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~----~~~~A~~VLie---~i~nl 1092 (1630)
T 1xi4_A 1028 LILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFD----VNTSAVQVLIE---HIGNL 1092 (1630)
T ss_pred HHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcC----CHHHHHHHHHH---HHhhH
Confidence 77777777 557777777766422 1 2336677889999999999999864 22233344433 78899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 283 DDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKM 362 (546)
Q Consensus 283 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 362 (546)
++|.++.++.. +..+|..+..++.+.|++++|.+.|.+. -|...|..++.+|.+.|++++|.+.|...
T Consensus 1093 drAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1093 DRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred HHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988663 6788999999999999999999999663 37778999999999999999999999988
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 009011 363 KSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCE 442 (546)
Q Consensus 363 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 442 (546)
.+.. ++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|... .
T Consensus 1161 rk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ 1222 (1630)
T 1xi4_A 1161 RKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 1222 (1630)
T ss_pred Hhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------h
Confidence 8764 34444456999999999988644443 2 356777888999999999999999999985 4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 443 TYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLE 522 (546)
Q Consensus 443 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 522 (546)
.|..+..++++.|+++.|.+.+++.. +..+|..+..+|...|++..|...... +..+...+..++..|.
T Consensus 1223 ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe 1291 (1630)
T 1xi4_A 1223 NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQ 1291 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHH
Confidence 79999999999999999999998763 345555555555555555444443332 1223334444445555
Q ss_pred hcChhhHHHHHHHH
Q 009011 523 KKRLGNAKERINKL 536 (546)
Q Consensus 523 ~~g~~~~a~~~~~~ 536 (546)
+.|.+++|..+++.
T Consensus 1292 ~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1292 DRGYFEELITMLEA 1305 (1630)
T ss_pred HcCCHHHHHHHHHH
Confidence 55555555544433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.6e-14 Score=128.26 Aligned_cols=225 Identities=13% Similarity=0.099 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC----HHHHH
Q 009011 267 QIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGC--KPS----VITYT 340 (546)
Q Consensus 267 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~--~p~----~~~~~ 340 (546)
..+..+...+...|++++|...|++..+.. .+...|..+...|...|++++|.+.++...+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 445566666666666666666666666655 4556666666666666777777666666655321 112 35666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009011 341 IVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARS 420 (546)
Q Consensus 341 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 420 (546)
.+...+.+.|++++|...|+++.+.. |+. ..+.+.|++++|...++++.+... .+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhc
Confidence 66677777777777777777766643 332 335556667777777777766421 23455666677777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 009011 421 EEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFE 500 (546)
Q Consensus 421 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 500 (546)
++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..+. +...|..+...+...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7777777777776653 345667777777777777777777777777775433 56777777777888888888888877
Q ss_pred HHHHC
Q 009011 501 EMISK 505 (546)
Q Consensus 501 ~m~~~ 505 (546)
+..+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.5e-14 Score=127.93 Aligned_cols=223 Identities=13% Similarity=0.070 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCC---C----HHHHH
Q 009011 198 ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPL---S----SQIFN 270 (546)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~----~~~~~ 270 (546)
..+..+...+...|++++|++.|++..+.. .+..++..+..++...|++++|.+.+++.....|. + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344555555556666666666666555543 44555555555555555555555555554331111 1 34556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009011 271 ILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAK 350 (546)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g 350 (546)
.+...+...|++++|...|++..... |+. ..+.+.|++++|...++.+.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 66666666666666666666655532 221 22334455555555555555432 113334455555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 351 QINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQ 430 (546)
Q Consensus 351 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 430 (546)
++++|...++++.+.. +.+..++..+..+|.+.|++++|...+++..+.. +.+...|..+...+...|++++|.+.++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5555555555555443 2244555555555555555555555555555432 1234455555555555555555555555
Q ss_pred HHHH
Q 009011 431 KMEE 434 (546)
Q Consensus 431 ~m~~ 434 (546)
+..+
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.3e-13 Score=134.10 Aligned_cols=365 Identities=12% Similarity=0.022 Sum_probs=243.9
Q ss_pred HHHhhcCChhHHHHHHHHHHh-------CCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhC------CCCCCHHH
Q 009011 133 TLRRFSNDLTPAFGFFTWAKT-------QTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELN------NGYVSLAT 199 (546)
Q Consensus 133 ~l~~~~~~~~~a~~~f~~~~~-------~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~------~~~~~~~~ 199 (546)
.+....++.+.|+..|..+.. .........+|+.+..+|...|++++|...+++..+.. .......+
T Consensus 59 ~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~ 138 (472)
T 4g1t_A 59 YLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL 138 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHH
Confidence 333445678888888887652 11233446789999999999999999999998876521 02234567
Q ss_pred HHHHHHHHHhc--CChHHHHHHHHHhhhCCCCCCHHHHHHHHHH---HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 009011 200 MSTIMRRLVRG--GRYDDAVEAFRGMKKYGVEKDTRALSVLMDT---LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIH 274 (546)
Q Consensus 200 ~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~ 274 (546)
+.....++... +++++|++.|++..+.. +.+...+..+..+ +...++.++|.+.+++.....|.+..++..+..
T Consensus 139 ~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~ 217 (472)
T 4g1t_A 139 DCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLAL 217 (472)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHH
Confidence 76666666554 46899999999998754 4455555555444 445677788888888877767778888877776
Q ss_pred HHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-
Q 009011 275 GWCKT----RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKA- 349 (546)
Q Consensus 275 ~~~~~----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~- 349 (546)
.+... |+.++|.+.+++....... +...+..+...|...|++++|...+++..+... -+..++..+..+|...
T Consensus 218 ~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~y~~~~ 295 (472)
T 4g1t_A 218 KLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQIGCCYRAKV 295 (472)
T ss_dssp HHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHH
Confidence 66554 5778999999998876543 677889999999999999999999999988743 3566666666555322
Q ss_pred ------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HH
Q 009011 350 ------------------KQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVL--TY 409 (546)
Q Consensus 350 ------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~ 409 (546)
+..+.|...+++..+.+ +.+..++..+...|...|++++|.+.|++..+....+... .+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~ 374 (472)
T 4g1t_A 296 FQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH 374 (472)
T ss_dssp HHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 23567788888877654 3455677888999999999999999999998765333221 12
Q ss_pred HHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 009011 410 NTMIS-SACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIE 488 (546)
Q Consensus 410 ~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 488 (546)
..+.. .....|+.++|+..|++..+. .|+...... ..+.+..+++...+.++. +..+|..+...|..
T Consensus 375 ~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~p~-~~~~~~~LG~~~~~ 442 (472)
T 4g1t_A 375 LRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKNGA-DSEALHVLAFLQEL 442 (472)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHCC--CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 22222 235679999999999999885 455332222 223445566666665544 67899999999999
Q ss_pred cCChHHHHHHHHHHHHCC-CCCCHHH
Q 009011 489 SGKLELACSFFEEMISKG-IVPYHST 513 (546)
Q Consensus 489 ~g~~~~A~~~~~~m~~~g-~~p~~~~ 513 (546)
.|++++|.+.|++.++.| ..|+..+
T Consensus 443 ~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 443 NEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHCC---------------------
T ss_pred cCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 999999999999999865 2344433
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.2e-14 Score=126.58 Aligned_cols=112 Identities=13% Similarity=0.036 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 280 RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVY 359 (546)
Q Consensus 280 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 359 (546)
|++++|...+++..+..+. +...|..+...|...|++++|+..|++..+.. .+...+..+..++...|++++|...|
T Consensus 98 g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4444444444444333221 23333333344444444444444444443333 23333334444444444444444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 360 EKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFE 395 (546)
Q Consensus 360 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 395 (546)
++..+.. +.+...+..+...+.+.|++++|...++
T Consensus 175 ~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 175 AKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHTC------------
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4443332 1233333333344444444444444333
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.5e-14 Score=125.78 Aligned_cols=201 Identities=11% Similarity=0.012 Sum_probs=167.9
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHH
Q 009011 158 MHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSV 237 (546)
Q Consensus 158 ~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 237 (546)
+++...+..+...+.+.|++++|...|++..+ . .|.+...+..+...+.+.|++++|+..|++..+.. +.+...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALK-E-NPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT-T-SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 45677888999999999999999999999988 4 77889999999999999999999999999998764 567888999
Q ss_pred HHHHHHcc-----------CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009011 238 LMDTLVKG-----------NSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTC 306 (546)
Q Consensus 238 ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 306 (546)
+..++... |++++|...+++..+..|.+...+..+...+...|++++|...|++..+.. .+...+..
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 99999999 999999999999988888899999999999999999999999999999887 58889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009011 307 FIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKS 364 (546)
Q Consensus 307 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 364 (546)
+...|...|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 9999999999999999999999874 33678888999999999999999999987654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=5e-12 Score=117.41 Aligned_cols=225 Identities=15% Similarity=0.032 Sum_probs=147.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHH
Q 009011 264 LSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR----EKDFRKVDDTLKEMQEKGCKPSVITY 339 (546)
Q Consensus 264 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~~~ 339 (546)
.+..++..+...+...|++++|...|++..+. -+..++..+...|.. .+++++|...|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 34555666666666667777777777666663 244556666666666 677777777777666654 55566
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009011 340 TIVMHALGK----AKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSK----AGRVKDANEIFEDMKKQGVVPNVLTYNT 411 (546)
Q Consensus 340 ~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 411 (546)
..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 666666666 677777777777766654 55666666666666 677777777777776654 4555666
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009011 412 MISSACA----RSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCR----KKRMKVLNFLLTHMFKNDVSMDAGTYASLV 483 (546)
Q Consensus 412 li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 483 (546)
+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 6666665 677777777777776653 34556666666666 777777777777776653 255666666
Q ss_pred HHHHH----cCChHHHHHHHHHHHHCC
Q 009011 484 RGLIE----SGKLELACSFFEEMISKG 506 (546)
Q Consensus 484 ~~~~~----~g~~~~A~~~~~~m~~~g 506 (546)
..|.+ .+++++|.+.|++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 66766 777777777777777665
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=9.7e-13 Score=120.53 Aligned_cols=198 Identities=12% Similarity=0.059 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDT 241 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 241 (546)
..|..+...+...|++++|.+.|+++.+. .+.+..++..+...+...|++++|++.|+++.+.. +.+...+..+...
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 34556666667777777777777776662 34456666666666777777777777776665542 3345555555555
Q ss_pred HHccCCHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009011 242 LVKGNSVEHAYKVFLEFKD--CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRK 319 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 319 (546)
+...|++++|.+.++++.. ..+.+...+..+...+.+.|++++|...+++..+.... +...+..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 5555666666665555544 33334445555555555555555555555555443221 34444444455555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009011 320 VDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKS 364 (546)
Q Consensus 320 a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 364 (546)
|...++++.+.. +.+...+..+...+.+.|+.++|.++++++.+
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555555444432 12333444444444444555555544444444
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=9.5e-13 Score=120.60 Aligned_cols=201 Identities=9% Similarity=-0.000 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 009011 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGW 276 (546)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 276 (546)
...+..+...+...|++++|++.|+++.+.. +.+..++..+..++...|++++|.+.++++....|.+..++..+...|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 4556666777777777777777777776543 445666666666777777777777777666655555666666666667
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 277 CKTRKVDDAQKAMKEMFQQGFSP-DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEA 355 (546)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 355 (546)
...|++++|.+.++++...+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777766666522223 34455555566666666666666666665543 22445555555666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 356 LKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ 400 (546)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 400 (546)
...++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666655543 234455555555555566666666666555543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-12 Score=116.94 Aligned_cols=201 Identities=14% Similarity=0.058 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 009011 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGW 276 (546)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 276 (546)
...+..+...+...|++++|++.|+++.+.. +.+...+..+..++...|++++|.+.+++.....|.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3444445555555555555555555554432 333445555555555555555555555555444444555555566666
Q ss_pred Hhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 009011 277 CKT-RKVDDAQKAMKEMFQQGFSPD-VVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINE 354 (546)
Q Consensus 277 ~~~-g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 354 (546)
... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 666 666666666666555211222 4455555566666666666666666655542 2245555666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 355 ALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKK 399 (546)
Q Consensus 355 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 399 (546)
|...++++.+.....+...+..+...+...|+.+.|..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 666666665543113455555566666666666666666666654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.2e-13 Score=123.89 Aligned_cols=236 Identities=12% Similarity=0.070 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC--CHHHHHHH
Q 009011 161 PEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEK--DTRALSVL 238 (546)
Q Consensus 161 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~l 238 (546)
+..+......+...|++++|.+.|+++.+ . .+.+...+..+...+...|++++|++.|++..+.+..+ ...++..+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEA-K-KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHH-T-TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 34455667777888888888888888877 3 44555577777778888888888888888877632111 23346777
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009011 239 MDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFR 318 (546)
Q Consensus 239 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 318 (546)
..++...|++++|.+.+++.....|.+..++..+...|...|++++|...+++..+.... +...|..+...+...++++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHH
Confidence 777777788888888887777666667777777777777777777777777777665322 4555555552333345777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCC-CCC------HHHHHHHHHHHHhcCCHH
Q 009011 319 KVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQ---INEALKVYEKMKSDDC-LPD------TSFYSSLIFILSKAGRVK 388 (546)
Q Consensus 319 ~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~-~~~------~~~~~~li~~~~~~g~~~ 388 (546)
+|.+.++++.+.. +.+...+..+..++...|+ +++|...+++..+... .|+ ..+|..+...|.+.|+++
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 7777777776653 2235555556666666666 6666666666554310 122 135555666666666666
Q ss_pred HHHHHHHHHHHC
Q 009011 389 DANEIFEDMKKQ 400 (546)
Q Consensus 389 ~A~~~~~~~~~~ 400 (546)
+|.+.+++..+.
T Consensus 239 ~A~~~~~~al~~ 250 (272)
T 3u4t_A 239 KADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 666666666553
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=9.1e-13 Score=127.78 Aligned_cols=197 Identities=6% Similarity=-0.024 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009011 161 PEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGR-YDDAVEAFRGMKKYGVEKDTRALSVLM 239 (546)
Q Consensus 161 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~ll 239 (546)
..+|..+..++.+.|++++|++.|+++.+ . .+.+..+|+.+...+...|+ +++|++.|++..+.. +.+...|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~-l-~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIE-L-NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHH-h-CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 45566666677777777777777777666 2 45566666666666666665 666766666666543 44555566666
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChh
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR-EKDFR 318 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~ 318 (546)
.++...|++++|...|+++....|.+..+|..+..++.+.|++++|+..++++++..+. +...|+.+..++.+ .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 66666666666666666655555555666666666666666666666666665554333 45555555555555 33334
Q ss_pred HH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHH
Q 009011 319 KV-----DDTLKEMQEKGCKPSVITYTIVMHALGKAK--QINEALKVYEKM 362 (546)
Q Consensus 319 ~a-----~~l~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~ 362 (546)
+| +..+++....... +...|..+...+.+.| ++++|.+.+.++
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 44 2444444433211 3334444444444433 244444444443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-12 Score=116.67 Aligned_cols=200 Identities=10% Similarity=0.027 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009011 267 QIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHAL 346 (546)
Q Consensus 267 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~ 346 (546)
.++..+...+...|++++|...++++.+.... +...+..+...|...|++++|.+.++++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 33444444444444444444444444433211 23344444444444444444444444444432 11334444444444
Q ss_pred Hhc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009011 347 GKA-KQINEALKVYEKMKSDDCLP-DTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEEN 424 (546)
Q Consensus 347 ~~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 424 (546)
... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+... .+...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHHH
Confidence 444 55555555554444411111 233444444445555555555555554444321 134444444555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009011 425 ALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 425 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 469 (546)
|...++++.+.....+...+..+...+...|+.+.+..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555555544432112344444444444455555555555555443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-13 Score=128.65 Aligned_cols=249 Identities=10% Similarity=-0.024 Sum_probs=158.0
Q ss_pred HcCCChHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHH
Q 009011 172 GKSKKFCLMWELVKEMDELNN--GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVE 249 (546)
Q Consensus 172 ~~~~~~~~a~~l~~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 249 (546)
...|++++|.+.|+++.+... .+.+..++..+...+...|++++|++.|+++.+.. +.+..++..+..++...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 345778888888888776321 12346677777888888888888888888877653 456777777777788888888
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009011 250 HAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQE 329 (546)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (546)
+|.+.+++.....|.+..++..+...|.+.|++++|...++++.+.. |+.......+..+...|++++|...+++...
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 88888877776666677777888888888888888888888777653 3333333344444566777777777766665
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009011 330 KGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCL---PDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNV 406 (546)
Q Consensus 330 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 406 (546)
.. +++...+. ++..+...++.++|.+.+.+..+.... .+..++..+...|.+.|++++|...|++..+.. |+.
T Consensus 173 ~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN 248 (275)
T ss_dssp HS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT
T ss_pred cC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh
Confidence 42 22333333 555566666777777777766543211 014556666667777777777777777766543 321
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 009011 407 LTYNTMISSACARSEEENALKLL 429 (546)
Q Consensus 407 ~~~~~li~~~~~~g~~~~A~~~~ 429 (546)
+.....++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 222233445556666665554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-13 Score=123.42 Aligned_cols=201 Identities=9% Similarity=-0.022 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLM 239 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 239 (546)
+...|..+...+...|++++|...|+++.+ . .+.+...+..+...+...|++++|++.|+++.+.. +.+..++..+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIE-E-NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHT-T-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHH-h-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 344566667777777777777777777766 3 45566777777777777777777777777766543 34556666666
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRK 319 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 319 (546)
..+...|++++|.+.++++....+.+..++..+...+.+.|++++|...++++.+.... +...+..+...+.+.|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHH
Confidence 66666667777766666665555556666666666666666666666666666554322 45555555666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009011 320 VDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSD 365 (546)
Q Consensus 320 a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 365 (546)
|...++++.+.. +.+..++..+..++.+.|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666666655542 224445555555555556666666665555544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-12 Score=127.45 Aligned_cols=254 Identities=9% Similarity=-0.011 Sum_probs=209.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHhhcCCCCCHHHHHH
Q 009011 193 GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNS-VEHAYKVFLEFKDCIPLSSQIFNI 271 (546)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~ 271 (546)
.+.....|+.+...+.+.|++++|++.|++..+.. +.+..+|..+..++...|+ +++|...|++.....|.+..+|+.
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~ 171 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 171 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 33456677888888999999999999999998764 5678889999999999996 999999999999888899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cC
Q 009011 272 LIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGK-AK 350 (546)
Q Consensus 272 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~-~g 350 (546)
+..++...|++++|+..|+++++.... +...|..+..++.+.|++++|+..++++++.... +...|+.+..++.+ .|
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcC
Confidence 999999999999999999999987654 7889999999999999999999999999988544 78889999999998 66
Q ss_pred CHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---
Q 009011 351 QINEA-----LKVYEKMKSDDCLPDTSFYSSLIFILSKAG--RVKDANEIFEDMKKQGVVPNVLTYNTMISSACARS--- 420 (546)
Q Consensus 351 ~~~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--- 420 (546)
..++| +..|++..+.. +-+...|+.+...+.+.| ++++|.+.+.++ +. ...+...+..+...|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccc
Confidence 65777 58888888765 447788988888898888 689999999888 43 2346778888888888864
Q ss_pred ------CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHh
Q 009011 421 ------EEENALKLLQKM-EEDLCKPDCETYAPLLKMCCR 453 (546)
Q Consensus 421 ------~~~~A~~~~~~m-~~~~~~p~~~~~~~ll~~~~~ 453 (546)
..++|.++++++ .+.+ +.....|..+...+..
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQS 365 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHH
Confidence 258999999998 6642 3334555555555543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-11 Score=113.54 Aligned_cols=226 Identities=10% Similarity=-0.046 Sum_probs=199.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 009011 300 DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGK----AKQINEALKVYEKMKSDDCLPDTSFYS 375 (546)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 375 (546)
+..++..+...|...|++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56678888889999999999999999999843 56788888999999 999999999999999886 778888
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009011 376 SLIFILSK----AGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACA----RSEEENALKLLQKMEEDLCKPDCETYAPL 447 (546)
Q Consensus 376 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 447 (546)
.+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|.+++++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 89999999 999999999999999874 77889999999999 999999999999999875 56777888
Q ss_pred HHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009011 448 LKMCCR----KKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIE----SGKLELACSFFEEMISKGIVPYHSTYKMLEE 519 (546)
Q Consensus 448 l~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 519 (546)
...|.. .++.++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888888 999999999999999874 57888889999999 999999999999999886 3667778888
Q ss_pred HHHh----cChhhHHHHHHHHHHHHhhh
Q 009011 520 KLEK----KRLGNAKERINKLLAHAKEQ 543 (546)
Q Consensus 520 ~~~~----~g~~~~a~~~~~~m~~~~~~ 543 (546)
.+.. .++.++|.+.++...+.+..
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 8888 89999999999988776643
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.6e-13 Score=122.40 Aligned_cols=122 Identities=16% Similarity=0.120 Sum_probs=47.4
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChh
Q 009011 241 TLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPD--VVSYTCFIEHYCREKDFR 318 (546)
Q Consensus 241 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~ 318 (546)
.+...|++++|...|++..+..|.+...+..+...|...|++++|...+++..+.+..++ ...|..+...|...|+++
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~ 91 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDS 91 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHH
Confidence 333444444444444443333333333444444444444444444444444443211111 122333444444444444
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 319 KVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMK 363 (546)
Q Consensus 319 ~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 363 (546)
+|.+.+++..+.... +...+..+...+...|++++|...+++..
T Consensus 92 ~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al 135 (272)
T 3u4t_A 92 LAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQI 135 (272)
T ss_dssp HHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 444444444433211 22333344444444444444444444433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.5e-13 Score=122.66 Aligned_cols=200 Identities=13% Similarity=0.089 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
....|..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.+++.....+.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34455556666666677777777776666532 44555666666666666666666666666555455556666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 276 WCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEA 355 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 355 (546)
+...|++++|.+.++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666666554322 44555555555666666666666666555442 22444555555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 356 LKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKK 399 (546)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 399 (546)
...++++.+.. +.+..++..+..+|.+.|++++|.+.++++.+
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 55555555442 22344555555555555555555555555544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.8e-13 Score=125.82 Aligned_cols=221 Identities=9% Similarity=-0.073 Sum_probs=118.6
Q ss_pred hcCChHHHHHHHHHhhhCCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 209 RGGRYDDAVEAFRGMKKYGV---EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDA 285 (546)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 285 (546)
..|++++|++.|+++.+... +.+..++..+..++...|++++|.+.|++.....|.+..++..+...|...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 34667777777777766421 113455666666666777777777777666655566666666666677777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009011 286 QKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSD 365 (546)
Q Consensus 286 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 365 (546)
...|++..+.... +...+..+...|.+.|++++|...++++.+.. |+.......+..+...|++++|...+.+....
T Consensus 97 ~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 7776666654322 34556666666666666666666666665542 22222222333334445566666655554443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 366 DCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVP---NVLTYNTMISSACARSEEENALKLLQKMEE 434 (546)
Q Consensus 366 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 434 (546)
. +++...+. ++..+...++.++|.+.+++..+..... +...+..+...+...|++++|...|+++.+
T Consensus 174 ~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 174 S-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp S-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred C-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2 22222222 3444444555555555555544321000 023444444445555555555555555444
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-12 Score=130.04 Aligned_cols=371 Identities=11% Similarity=0.020 Sum_probs=232.9
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCCh---HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC----
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKF---CLMWELVKEMDELNNGYVSLATMSTIMRRLVRGG---- 211 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~---~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g---- 211 (546)
++.+.|+..|..+... | +...+..|..+|...|+. ++|.+.|++..+ . +...+..+...+...|
T Consensus 17 g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~---~--~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD---T--SPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHH-T---CCTGGGTCC---------------------------------CHHHHHHHHHTC--CCH
T ss_pred CCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh---C--CHHHHHHHHHHHHhCCCCCC
Confidence 4677888888887643 3 445566677777777877 889999888765 2 5566666666555555
Q ss_pred -ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009011 212 -RYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEH---AYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQK 287 (546)
Q Consensus 212 -~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 287 (546)
++++|++.|++..+.|. ++ .+..|...|...+..+. +.+.+..... +.+...+..|...|...+.++++..
T Consensus 88 ~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHH
T ss_pred cCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHH
Confidence 67889999999888663 33 56666667766554433 3333333332 2235567778888888885544444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHH
Q 009011 288 AMKEMFQQGFSPDVVSYTCFIEHYCREK---DFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKA----KQINEALKVYE 360 (546)
Q Consensus 288 ~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~a~~~~~ 360 (546)
....+.+.-...+...+..|...|.+.| +.++|++.|+...+.|.. +...+..+...|... +++++|.++|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 4333322211123347888888898999 899999999999988744 555556677777554 68999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHH
Q 009011 361 KMKSDDCLPDTSFYSSLIFI-L--SKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARS-----EEENALKLLQKM 432 (546)
Q Consensus 361 ~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m 432 (546)
+.. .| +...+..+... | ...+++++|.+.|++..+.| +...+..+...|. .| +.++|.++|++.
T Consensus 242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 988 43 45566666665 3 46889999999999998876 6777777777776 45 999999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 009011 433 EEDLCKPDCETYAPLLKMCCR----KKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIE----SGKLELACSFFEEMIS 504 (546)
Q Consensus 433 ~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 504 (546)
. .| +...+..+...|.. ..+.++|..+++...+.|. ......+...|.. ..+.++|..+|+...+
T Consensus 314 a-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 314 V-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp T-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred h-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 7 33 56677777766665 3489999999999988764 3455566666653 4589999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHHHHH
Q 009011 505 KGIVPYHSTYKMLEEKLEKKRLGNAKERINKLLAHA 540 (546)
Q Consensus 505 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 540 (546)
.|.. +.......+......++.+++.++.+...+.
T Consensus 387 ~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 387 QDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp TCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 8832 1111111122222334566666666665543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-12 Score=129.92 Aligned_cols=278 Identities=11% Similarity=-0.028 Sum_probs=147.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhhcC------CCCC
Q 009011 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDT----RALSVLMDTLVKGNSVEHAYKVFLEFKDC------IPLS 265 (546)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~ 265 (546)
....+..+...+...|++++|++.|+++.+.+ +.+. ..+..+..++...|++++|...+++.... .+..
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 34555666777788888888888888887653 2233 35666777777777777777777665431 1223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCC-----------------hhHHHHH
Q 009011 266 SQIFNILIHGWCKTRKVDDAQKAMKEMFQQ----GF-SPDVVSYTCFIEHYCREKD-----------------FRKVDDT 323 (546)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~-----------------~~~a~~l 323 (546)
..++..+...|...|++++|...+++..+. +- .....++..+...|...|+ +++|.+.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 445666666677777777777776665442 10 0112344455555555555 4444444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009011 324 LKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDC-LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGV 402 (546)
Q Consensus 324 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 402 (546)
+++..+.. . ..+. .....++..+...|...|++++|...+++..+...
T Consensus 206 ~~~al~~~----------------------------~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 206 YQENLKLM----------------------------R---DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHH----------------------------H---HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----------------------------H---HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 44432210 0 0000 01123444455555555555555555554432110
Q ss_pred -CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-
Q 009011 403 -VPN----VLTYNTMISSACARSEEENALKLLQKMEEDLC--K---PDCETYAPLLKMCCRKKRMKVLNFLLTHMFKND- 471 (546)
Q Consensus 403 -~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~- 471 (546)
..+ ...+..+...+...|++++|...+++..+... . ....++..+...+...|++++|...+++..+..
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 255 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 001 12445555555566666666666655543210 0 012345555555666666666666666554411
Q ss_pred ----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 472 ----VSMDAGTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 472 ----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
......++..+...|...|++++|...+++..+.
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 0011335556666666777777777777666543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-12 Score=129.19 Aligned_cols=300 Identities=11% Similarity=-0.054 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC-CCCHHHH
Q 009011 161 PEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVS----LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGV-EKDTRAL 235 (546)
Q Consensus 161 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~ 235 (546)
...+..+...+...|++++|...|+++.+.. +.+ ..++..+...+...|++++|+..|++..+... ..+
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---- 82 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD---- 82 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc----
Confidence 3344455555555555555555555555532 112 23445555555555555555555555432100 000
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHH
Q 009011 236 SVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFS-PD----VVSYTCFIEH 310 (546)
Q Consensus 236 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~ 310 (546)
.+....++..+...|...|++++|...+++..+.... .+ ..++..+...
T Consensus 83 --------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 136 (406)
T 3sf4_A 83 --------------------------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV 136 (406)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --------------------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 0111233444455555555555555555544332000 01 2244455555
Q ss_pred HHhcCC--------------------hhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009011 311 YCREKD--------------------FRKVDDTLKEMQEK----GCKP-SVITYTIVMHALGKAKQINEALKVYEKMKSD 365 (546)
Q Consensus 311 ~~~~g~--------------------~~~a~~l~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 365 (546)
|...|+ +++|...+++.... +..+ ...++..+...+...|++++|...+++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555555 55555555544321 1111 1234555566666666776666666665432
Q ss_pred CC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 366 DC-LP----DTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVV-PN----VLTYNTMISSACARSEEENALKLLQKMEED 435 (546)
Q Consensus 366 ~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 435 (546)
.. .+ ...++..+...|...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..+.
T Consensus 217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 10 01 1235566666677777777777777665432100 11 345566666777777777777777766542
Q ss_pred CC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCCh
Q 009011 436 LC-KPD----CETYAPLLKMCCRKKRMKVLNFLLTHMFKN----DV-SMDAGTYASLVRGLIESGKL 492 (546)
Q Consensus 436 ~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~ 492 (546)
.. ..+ ..++..+...|...|++++|...+++..+. +. .....++..+...+...|+.
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 10 011 345566666677777777777777765541 11 11234455555566555554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-12 Score=126.22 Aligned_cols=270 Identities=12% Similarity=-0.019 Sum_probs=177.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHhhhC----C-CCCCHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSL----ATMSTIMRRLVRGGRYDDAVEAFRGMKKY----G-VEKDTR 233 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~~ 233 (546)
.+..+...+...|++++|.+.|+++.+.. +.+. .++..+...|...|++++|++.|++..+. + .+....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34567778889999999999999998853 3333 57888999999999999999999987542 1 123346
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcC------CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 009011 234 ALSVLMDTLVKGNSVEHAYKVFLEFKDC------IPLSSQIFNILIHGWCKTRK-----------------VDDAQKAMK 290 (546)
Q Consensus 234 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~-----------------~~~a~~~~~ 290 (546)
++..+...+...|++++|...+++.... .+....++..+...|...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 6788888899999999999999876542 23345578899999999999 888888888
Q ss_pred HHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 291 EMFQQ----GFSP-DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGC-KPS----VITYTIVMHALGKAKQINEALKVYE 360 (546)
Q Consensus 291 ~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~ 360 (546)
+..+. +..+ ...++..+...|...|++++|...+++..+... .++ ...+..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 76542 1111 234666677777788888888888777654310 011 1255566666777777777777776
Q ss_pred HHHhCCC---C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 361 KMKSDDC---L--PDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGV-----VPNVLTYNTMISSACARSEEENALKLLQ 430 (546)
Q Consensus 361 ~~~~~~~---~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~li~~~~~~g~~~~A~~~~~ 430 (546)
+..+... . ....++..+...|...|++++|...+++..+... .....++..+...|...|++++|.+.++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 6544210 0 1134555566666666666666666665543100 0012244445555555566666666555
Q ss_pred HHHH
Q 009011 431 KMEE 434 (546)
Q Consensus 431 ~m~~ 434 (546)
+..+
T Consensus 368 ~al~ 371 (411)
T 4a1s_A 368 QHLQ 371 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.47 E-value=8.9e-12 Score=124.52 Aligned_cols=188 Identities=12% Similarity=0.062 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHHHcCCCCCHHHHH
Q 009011 268 IFNILIHGWCKTR---KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCRE----KDFRKVDDTLKEMQEKGCKPSVITYT 340 (546)
Q Consensus 268 ~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~a~~l~~~m~~~g~~p~~~~~~ 340 (546)
.+..|...|.+.| +.++|.+.|++..+.|.. +...+..+...|... +++++|...|+... .| +...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHH
Confidence 5555555555555 555555555555555432 333333444444333 45556666655555 32 223333
Q ss_pred HHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009011 341 IVMHA-L--GKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAG-----RVKDANEIFEDMKKQGVVPNVLTYNTM 412 (546)
Q Consensus 341 ~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~l 412 (546)
.+... + ...+++++|.++|++..+.| +...+..+..+|. .| ++++|.+.|++.. . -+...+..+
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHH
Confidence 44433 2 23555666666666555544 3444444444444 33 5555655555544 2 244444444
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 009011 413 ISSACA----RSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCR----KKRMKVLNFLLTHMFKND 471 (546)
Q Consensus 413 i~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~ 471 (546)
...|.. ..+.++|..+|++..+.|. ......|...|.. ..+.++|..+++...+.|
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 444443 2255566666655555442 2223333333332 334555555555555544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.3e-12 Score=124.99 Aligned_cols=297 Identities=12% Similarity=-0.015 Sum_probs=206.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CH
Q 009011 231 DTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLS----SQIFNILIHGWCKTRKVDDAQKAMKEMFQQ----GFSP-DV 301 (546)
Q Consensus 231 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~ 301 (546)
....+......+...|++++|...|++.....|.+ ..++..+...|...|++++|...+++.... +..| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 33444444555555566666666665554433333 245667777777777777777777765432 2111 24
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHH
Q 009011 302 VSYTCFIEHYCREKDFRKVDDTLKEMQEKGC-KPS----VITYTIVMHALGKAKQ--------------------INEAL 356 (546)
Q Consensus 302 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~a~ 356 (546)
.++..+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 5778888899999999999999998775310 012 4477788889999999 99999
Q ss_pred HHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHH
Q 009011 357 KVYEKMKSD----DCL-PDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGV-VPN----VLTYNTMISSACARSEEENAL 426 (546)
Q Consensus 357 ~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~ 426 (546)
..+.+..+. +.. ....++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 998876542 211 2245778888999999999999999998764210 122 237788888999999999999
Q ss_pred HHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCChHHHH
Q 009011 427 KLLQKMEEDLC-KPD----CETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVS-MD----AGTYASLVRGLIESGKLELAC 496 (546)
Q Consensus 427 ~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~ 496 (546)
..+++..+... ..+ ..++..+...+...|++++|...+++..+.... .+ ..++..+...|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99998865310 111 457788888999999999999999988762111 12 567888899999999999999
Q ss_pred HHHHHHHHC----CCCC-CHHHHHHHHHHHHhcChh
Q 009011 497 SFFEEMISK----GIVP-YHSTYKMLEEKLEKKRLG 527 (546)
Q Consensus 497 ~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~ 527 (546)
..+++..+. +..+ ...++..+...+...|+.
T Consensus 328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 999987654 2112 134556666677666654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-09 Score=112.42 Aligned_cols=414 Identities=10% Similarity=0.042 Sum_probs=276.6
Q ss_pred CCCHHHHHHHHHhhc--CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCC---hHHHHHHHHHHHhhCCCCCCHH
Q 009011 124 SVSNSLVEQTLRRFS--NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKK---FCLMWELVKEMDELNNGYVSLA 198 (546)
Q Consensus 124 ~~~~~~~~~~l~~~~--~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~---~~~a~~l~~~m~~~~~~~~~~~ 198 (546)
+-+...+..++..+. +....+..+|..+.. -++.+...|..-+..-.+.++ ++.+..+|+......+.+++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~--~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHD--RFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 467888888888764 356667778887774 366677888888888888888 9999999998887221137888
Q ss_pred HHHHHHHHHHhcCCh--------HHHHHHHHHhhh-CCC-CCC-HHHHHHHHHHHH---------ccCCHHHHHHHHHHh
Q 009011 199 TMSTIMRRLVRGGRY--------DDAVEAFRGMKK-YGV-EKD-TRALSVLMDTLV---------KGNSVEHAYKVFLEF 258 (546)
Q Consensus 199 ~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~~~-~~~~~~ll~~~~---------~~g~~~~a~~~~~~~ 258 (546)
.|..-+....+.+.. +...++|+.... .|. .++ ...|...+.... ..++++.+..+|+..
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 887777766665543 334477776543 455 443 456666665443 234567788888887
Q ss_pred hcCCCCC--HHHHHHHHHHHHhcCC-------------HHHHHHHHHHHHHC--CCC---------------C-----C-
Q 009011 259 KDCIPLS--SQIFNILIHGWCKTRK-------------VDDAQKAMKEMFQQ--GFS---------------P-----D- 300 (546)
Q Consensus 259 ~~~~~~~--~~~~~~li~~~~~~g~-------------~~~a~~~~~~m~~~--g~~---------------~-----~- 300 (546)
.. +|.. ..+|......-...+. ++.|..++.++... ++. | +
T Consensus 221 L~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 221 LC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp TT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred Hh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence 74 4433 2344333222222111 22344444443221 111 1 0
Q ss_pred --HHHHHHHHHHHHhcC-------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCC
Q 009011 301 --VVSYTCFIEHYCREK-------DFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEAL-KVYEKMKSDDCLPD 370 (546)
Q Consensus 301 --~~~~~~li~~~~~~g-------~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~~~~~~~ 370 (546)
...|...+.---..+ ..+.+..+|++.... ++-+...|...+..+...|+.++|. ++|++.... ++.+
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 133444444322222 123456678887766 3447778888888888889999996 999999874 4557
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 371 TSFYSSLIFILSKAGRVKDANEIFEDMKKQGV---------VPN------------VLTYNTMISSACARSEEENALKLL 429 (546)
Q Consensus 371 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------~p~------------~~~~~~li~~~~~~g~~~~A~~~~ 429 (546)
...+-..+...-+.|++++|.++|+.+.+... .|+ ...|...+....+.|+.+.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77788888889999999999999999876310 132 236788888888889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 009011 430 QKMEEDLCKPDCETYAPLLKMCCRK-KRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIV 508 (546)
Q Consensus 430 ~~m~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 508 (546)
.+..+.-.......|......-.+. ++.+.|..+|+...+.- .-+...|..++......|+.+.|..+|++.+.....
T Consensus 458 ~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 458 GKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 9998761122334444333333344 45899999999999863 336777888999888999999999999999876532
Q ss_pred C--CHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhhh
Q 009011 509 P--YHSTYKMLEEKLEKKRLGNAKERINKLLAHAKEQ 543 (546)
Q Consensus 509 p--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 543 (546)
+ ....|...++.-...|+.+.+.++.+++.+.-++
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 2 2356777777778889999999999999876554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.7e-12 Score=119.44 Aligned_cols=278 Identities=14% Similarity=0.021 Sum_probs=135.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHhhcC------CCCCHHH
Q 009011 199 TMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKD----TRALSVLMDTLVKGNSVEHAYKVFLEFKDC------IPLSSQI 268 (546)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~ 268 (546)
.+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|.+.+++.... .+....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34445566667777777777777766542 222 244555666666666666666666554321 1112334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC-------------hhHHHHHHHHHHHc
Q 009011 269 FNILIHGWCKTRKVDDAQKAMKEMFQQGF-SPD----VVSYTCFIEHYCREKD-------------FRKVDDTLKEMQEK 330 (546)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~-------------~~~a~~l~~~m~~~ 330 (546)
+..+...+...|++++|...+++..+... ..+ ..++..+...|...|+ .+++.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~------- 158 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA------- 158 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH-------
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH-------
Confidence 55555555555555555555555433200 001 1233344444444444 0000000
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC
Q 009011 331 GCKPSVITYTIVMHALGKAKQINEALKVYEKMKSD----DC-LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGV-VP 404 (546)
Q Consensus 331 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p 404 (546)
+++|.+.+++..+. +. .....++..+...|...|++++|...+++..+... .+
T Consensus 159 ---------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 159 ---------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 44444444333211 10 01123445555555666666666666655542100 00
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC----
Q 009011 405 N----VLTYNTMISSACARSEEENALKLLQKMEEDLC-KPD----CETYAPLLKMCCRKKRMKVLNFLLTHMFKND---- 471 (546)
Q Consensus 405 ~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---- 471 (546)
+ ..++..+...+...|++++|...+++..+... ..+ ..++..+...+...|++++|...+++..+..
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 1 12455555566666666666666665543210 011 2345555555666666666666666554411
Q ss_pred -CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 472 -VSMDAGTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 472 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
......++..+...|.+.|++++|...+++..+.
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 0111335556666666677777777777666543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-10 Score=108.43 Aligned_cols=184 Identities=11% Similarity=0.091 Sum_probs=92.6
Q ss_pred HHHHHHHHHhhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHH
Q 009011 249 EHAYKVFLEFKD-CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVV-SYTCFIEHYCREKDFRKVDDTLKE 326 (546)
Q Consensus 249 ~~a~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~l~~~ 326 (546)
++|..+|++... ..|.+...|..++..+.+.|++++|..+|++..+..+. +.. .|..+...+.+.|++++|..+|++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 445555544444 23344445555555555555555555555555543211 121 455555555555555555555555
Q ss_pred HHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC
Q 009011 327 MQEKGCKPSVITYTIVMHALG-KAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQG-VVP 404 (546)
Q Consensus 327 m~~~g~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p 404 (546)
..+... .+...|........ ..|++++|.++|++..+.. +.+...|..++..+.+.|++++|..+|++..+.. +.|
T Consensus 160 a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 160 AREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 554321 12223322222211 2466666666666655542 2345555666666666666666666666666542 222
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 405 --NVLTYNTMISSACARSEEENALKLLQKMEED 435 (546)
Q Consensus 405 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 435 (546)
....|..++....+.|+.++|..+++++.+.
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555566556666666666666666553
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.6e-12 Score=121.01 Aligned_cols=275 Identities=12% Similarity=-0.015 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhhC----CCC-CCH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVS----LATMSTIMRRLVRGGRYDDAVEAFRGMKKY----GVE-KDT 232 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~ 232 (546)
..+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|++.+++..+. +-. ...
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 345566788899999999999999998853 333 467889999999999999999999987542 111 225
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhcC---CCC---CHHHHHHHHHHHHhcCC--------------------HHHHH
Q 009011 233 RALSVLMDTLVKGNSVEHAYKVFLEFKDC---IPL---SSQIFNILIHGWCKTRK--------------------VDDAQ 286 (546)
Q Consensus 233 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~---~~~~~~~li~~~~~~g~--------------------~~~a~ 286 (546)
.++..+...+...|++++|...+++.... .+. ...++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 56788888999999999999999886542 111 13478889999999999 88888
Q ss_pred HHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 287 KAMKEMFQQ----GFSP-DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGC-KPSVITYTIVMHALGKAKQINEALKVYE 360 (546)
Q Consensus 287 ~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~ 360 (546)
..+++.... +..+ ....+..+...+...|++++|...+++..+... .++..
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~----------------------- 220 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA----------------------- 220 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH-----------------------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH-----------------------
Confidence 887776432 1111 123455555556666666666666655443200 00100
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 361 KMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVV-PN----VLTYNTMISSACARSEEENALKLLQKMEED 435 (546)
Q Consensus 361 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 435 (546)
....++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..+.
T Consensus 221 --------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 221 --------AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp --------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 01123344444444445555554444443321000 01 233444455555555555555555554332
Q ss_pred ----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009011 436 ----LCK-PDCETYAPLLKMCCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 436 ----~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 469 (546)
+.. ....++..+...+...|++++|...+++..+
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 100 0123445555556666666666666665554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-10 Score=108.47 Aligned_cols=216 Identities=13% Similarity=0.090 Sum_probs=115.1
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc
Q 009011 250 HAYKVFLEFKDCIPLSSQIFNILIHGWC-------KTRKV-------DDAQKAMKEMFQQ-GFSPDVVSYTCFIEHYCRE 314 (546)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~ 314 (546)
+|..+|++.....|.+...|..++..+. +.|++ ++|..+|++.... .+ -+...|..+...+.+.
T Consensus 34 ~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHhc
Confidence 4444444444444445555555554443 23553 5666666666652 22 1444566666666666
Q ss_pred CChhHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 009011 315 KDFRKVDDTLKEMQEKGCKPS-VI-TYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILS-KAGRVKDAN 391 (546)
Q Consensus 315 g~~~~a~~l~~~m~~~g~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~ 391 (546)
|++++|.++|++..+. .|+ .. .|..++..+.+.|++++|..+|++..+.. +.+...|........ ..|++++|.
T Consensus 113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666653 222 22 55556666666666666666666666543 223333333222211 246666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009011 392 EIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDL-CKP--DCETYAPLLKMCCRKKRMKVLNFLLTHMF 468 (546)
Q Consensus 392 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 468 (546)
.+|+...+... -+...|..++..+.+.|+.++|..+|++..+.. ..| ....|..++....+.|+.+.|..+++++.
T Consensus 190 ~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666554321 245556666666666666666666666666542 233 24455555555566666666666666665
Q ss_pred hC
Q 009011 469 KN 470 (546)
Q Consensus 469 ~~ 470 (546)
+.
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3.4e-11 Score=104.41 Aligned_cols=166 Identities=13% Similarity=0.046 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLM 239 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 239 (546)
+..+|..+...|.+.|++++|++.|++..+ . .|.+..++..+...|.+.|++++|++.++...... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK-A-DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 344555566666666666666666666555 2 34455555555556666666666666555554432 33444444455
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRK 319 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 319 (546)
..+...++.+.+.+.+.+.....|.+...+..+...|.+.|++++|.+.|++..+..+. +..+|..+..+|.+.|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 55555555555555555554444555555555555555555555555555555544322 34445555555555555555
Q ss_pred HHHHHHHHHH
Q 009011 320 VDDTLKEMQE 329 (546)
Q Consensus 320 a~~l~~~m~~ 329 (546)
|.+.|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555444
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.40 E-value=9.3e-11 Score=101.58 Aligned_cols=166 Identities=15% Similarity=0.096 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+.......+.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 34555555556666666666666666555432 33445555555555555555555555555544444455555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 276 WCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEA 355 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 355 (546)
+...++++.|...+.+....... +...+..+...|.+.|++++|++.|++..+.. +.+..++..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 55555555555555555443222 34444444555555555555555555544432 12344444445555555555555
Q ss_pred HHHHHHHHh
Q 009011 356 LKVYEKMKS 364 (546)
Q Consensus 356 ~~~~~~~~~ 364 (546)
.+.|++..+
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555554444
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.2e-11 Score=116.53 Aligned_cols=231 Identities=11% Similarity=-0.054 Sum_probs=130.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CC-----CHHHHH
Q 009011 272 LIHGWCKTRKVDDAQKAMKEMFQQ----GFSP-DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGC-KP-----SVITYT 340 (546)
Q Consensus 272 li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p-----~~~~~~ 340 (546)
....+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++..+... .+ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445556667777777777766543 1111 234566666667777777777777766554210 01 123566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 009011 341 IVMHALGKAKQINEALKVYEKMKSD----DCL-PDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ----GV-VPNVLTYN 410 (546)
Q Consensus 341 ~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~ 410 (546)
.+...|...|++++|...+++..+. +.. ....++..+..+|...|++++|.+.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6666777777777777777666532 100 11235666677777777777777777766541 21 22345566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009011 411 TMISSACARSEEENALKLLQKMEED----LCKPDCETYAPLLKMCCRKKR---MKVLNFLLTHMFKNDVSMDAGTYASLV 483 (546)
Q Consensus 411 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~li 483 (546)
.+...+...|++++|...+++..+. +-+.....+..+...+...|+ .++|..++++.. ........+..+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHHHHHHHHHHH
Confidence 6677777777777777777766542 111111223445555556666 555555554441 1111233455566
Q ss_pred HHHHHcCChHHHHHHHHHHHH
Q 009011 484 RGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 484 ~~~~~~g~~~~A~~~~~~m~~ 504 (546)
..|...|++++|...+++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 666677777777777766553
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-11 Score=122.51 Aligned_cols=212 Identities=12% Similarity=0.008 Sum_probs=119.8
Q ss_pred ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 212 RYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSV-EHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMK 290 (546)
Q Consensus 212 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (546)
.++++++.+++..... +.+...+..+..++...|++ ++|.+.|++.....|.+..+|..+...|.+.|++++|...|+
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3556666666554432 34566666666666666666 677666666665555666666666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCHH
Q 009011 291 EMFQQGFSPDVVSYTCFIEHYCRE---------KDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKA--------KQIN 353 (546)
Q Consensus 291 ~m~~~g~~~~~~~~~~li~~~~~~---------g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~--------g~~~ 353 (546)
+..+.. |+...+..+...|... |++++|.+.+++..+... .+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 666553 4455566666666666 666666666666555432 2445555555555555 5555
Q ss_pred HHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 354 EALKVYEKMKSDDCL---PDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLL 429 (546)
Q Consensus 354 ~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 429 (546)
+|.+.|++..+.. + .+...|..+..+|...|++++|.+.|++..+... .+...+..+..++...|++++|++.+
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555532 1 2455555555555555555555555555544321 13334444555555555555554433
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.3e-11 Score=122.40 Aligned_cols=214 Identities=14% Similarity=-0.010 Sum_probs=147.8
Q ss_pred ChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 009011 176 KFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRY-DDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKV 254 (546)
Q Consensus 176 ~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 254 (546)
.++++.+.+++... . .+.+...+..+...+...|++ ++|++.|++..+.. +.+..++..+..+|...|++++|.+.
T Consensus 83 ~~~~al~~l~~~~~-~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLG-S-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHT-T-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhc-c-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 46666666666554 2 455677777777777777777 77777777776653 44567777777777777777777777
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCh
Q 009011 255 FLEFKDCIPLSSQIFNILIHGWCKT---------RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCRE--------KDF 317 (546)
Q Consensus 255 ~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~~ 317 (546)
|++.....| +...+..+...+... |++++|...+++..+.... +...|..+..+|... |++
T Consensus 160 ~~~al~~~p-~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 160 FSGALTHCK-NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHHTTCC-CHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHhhCC-CHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 777765433 367777777777777 7777777777777765433 566777777777777 777
Q ss_pred hHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 318 RKVDDTLKEMQEKGCK--PSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFE 395 (546)
Q Consensus 318 ~~a~~l~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 395 (546)
++|.+.|++..+.... -+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777777765320 266677777777777777777777777777654 3355666677777777777777665543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.4e-12 Score=120.72 Aligned_cols=240 Identities=11% Similarity=0.053 Sum_probs=124.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-----
Q 009011 263 PLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ-------GFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEK----- 330 (546)
Q Consensus 263 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----- 330 (546)
|.+..++..+...+...|++++|..+++++.+. ........+..+...|...|++++|...+++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 334455666666666666666666666666542 11123445566666666667777776666666543
Q ss_pred -CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 009011 331 -GC-KPSVITYTIVMHALGKAKQINEALKVYEKMKSD------DC-LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ- 400 (546)
Q Consensus 331 -g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 400 (546)
+. +....++..+...+...|++++|...++++.+. +. +....++..+...|...|++++|.+.++++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11 112345666666777777777777777666543 11 123455666777777777777777777776543
Q ss_pred -----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHH-------HHHHHHHhcCChHHH
Q 009011 401 -----GVVP-NVLTYNTMISSACARSEEENALKLLQKMEED-------LCKPDCETYA-------PLLKMCCRKKRMKVL 460 (546)
Q Consensus 401 -----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~-------~ll~~~~~~g~~~~a 460 (546)
+..| ...++..+...+...|++++|.+.++++.+. ...+...... .+...+...+.+.++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 1111 2345666777777777777777777777642 1111111111 111122223333333
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009011 461 NFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMI 503 (546)
Q Consensus 461 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 503 (546)
...++....... .+..++..+..+|.+.|++++|.+.|++..
T Consensus 264 ~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 264 GGWYKACKVDSP-TVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp C---------CH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334433333211 134455556666666666666666666554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.3e-11 Score=116.43 Aligned_cols=234 Identities=7% Similarity=-0.051 Sum_probs=177.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------CCCHHHHH
Q 009011 307 FIEHYCREKDFRKVDDTLKEMQEK----GCKP-SVITYTIVMHALGKAKQINEALKVYEKMKSDDC------LPDTSFYS 375 (546)
Q Consensus 307 li~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~ 375 (546)
....+...|++++|...+++..+. +..+ ...++..+...|...|++++|...+.+..+... .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455677899999999999998764 1111 245788889999999999999999998865311 11245788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 009011 376 SLIFILSKAGRVKDANEIFEDMKKQGVV-PN----VLTYNTMISSACARSEEENALKLLQKMEED----LC-KPDCETYA 445 (546)
Q Consensus 376 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~ 445 (546)
.+...|...|++++|.+.+++..+.... ++ ..++..+...|...|++++|.+.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8899999999999999999987642110 12 247788899999999999999999998762 22 33456788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 009011 446 PLLKMCCRKKRMKVLNFLLTHMFKND----VSMDAGTYASLVRGLIESGK---LELACSFFEEMISKGIVPY-HSTYKML 517 (546)
Q Consensus 446 ~ll~~~~~~g~~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l 517 (546)
.+...+.+.|++++|...+++..+.. -......+..+...+...|+ +++|..++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 89999999999999999999887621 11122335667777888898 77777777766 33333 3456778
Q ss_pred HHHHHhcChhhHHHHHHHHHHHHhhh
Q 009011 518 EEKLEKKRLGNAKERINKLLAHAKEQ 543 (546)
Q Consensus 518 ~~~~~~~g~~~~a~~~~~~m~~~~~~ 543 (546)
...|...|++++|.+.++...+...+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 88999999999999999998776553
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.5e-12 Score=121.67 Aligned_cols=169 Identities=12% Similarity=0.072 Sum_probs=115.3
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhh-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC------
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDEL-------NNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY------ 226 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 226 (546)
+..++..+...+...|++++|...|+++.+. . .+....++..+...+...|++++|++.|++..+.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD-HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3556788888999999999999999888763 2 4445677888888899999999999988887643
Q ss_pred C-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 009011 227 G-VEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDC--------IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ-- 295 (546)
Q Consensus 227 ~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-- 295 (546)
+ .+....++..+...+...|++++|.+.+++.... .+....++..+...+...|++++|...+++..+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1 1223455667777777777877777777665431 1233445666777777777777777777776553
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009011 296 ----GFSP-DVVSYTCFIEHYCREKDFRKVDDTLKEMQE 329 (546)
Q Consensus 296 ----g~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (546)
+..| ...++..+...|...|++++|.+.++++.+
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112 234556666666677777777777666654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-09 Score=105.73 Aligned_cols=270 Identities=9% Similarity=-0.022 Sum_probs=187.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHH
Q 009011 236 SVLMDTLVKGNSVEHAYKVFLEFKDCIPLSS-----QIFNILIHGWCKTRKVDDAQKAMKEMFQQGF-SPD----VVSYT 305 (546)
Q Consensus 236 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~ 305 (546)
......+...|++++|...+++.....+.+. .+++.+...+...|++++|...+++...... ..+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3444556678999999999988766444332 2467777888889999999999988765311 112 22356
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHHH
Q 009011 306 CFIEHYCREKDFRKVDDTLKEMQEK----GCK--P-SVITYTIVMHALGKAKQINEALKVYEKMKSDDCL----PDTSFY 374 (546)
Q Consensus 306 ~li~~~~~~g~~~~a~~l~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~ 374 (546)
.+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+.... ....++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 6777888899999999999887753 222 2 2345666778888999999999999888754321 124567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHH
Q 009011 375 SSLIFILSKAGRVKDANEIFEDMKKQGVVPN-VLTYN-----TMISSACARSEEENALKLLQKMEEDLCKPD---CETYA 445 (546)
Q Consensus 375 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~ 445 (546)
..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.......+. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 7788888899999999999998765311111 11222 233446788999999999988765432111 23456
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 446 PLLKMCCRKKRMKVLNFLLTHMFK----NDVSMDA-GTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 446 ~ll~~~~~~g~~~~a~~~~~~m~~----~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
.+...+...|++++|...++...+ .+..++. ..+..+..++...|+.++|...+++....
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 677788889999999999988765 2222222 35666777888899999999999887653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-09 Score=105.76 Aligned_cols=301 Identities=11% Similarity=0.030 Sum_probs=209.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHhhcC--CCCC----HH
Q 009011 198 ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTR----ALSVLMDTLVKGNSVEHAYKVFLEFKDC--IPLS----SQ 267 (546)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~----~~ 267 (546)
.........+...|++++|...+++........+.. ++..+...+...|++++|.+.+++.... ...+ ..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 344455566778999999999999987754223332 4566677788899999999999886541 1112 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC----CCH
Q 009011 268 IFNILIHGWCKTRKVDDAQKAMKEMFQQ----GFS--P-DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCK----PSV 336 (546)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~----p~~ 336 (546)
+++.+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... ...
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 3677888899999999999999988653 222 2 2346667888899999999999999998865322 124
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HH
Q 009011 337 ITYTIVMHALGKAKQINEALKVYEKMKSDDCLP--DTSFYS----SLIFILSKAGRVKDANEIFEDMKKQGVVPN---VL 407 (546)
Q Consensus 337 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~ 407 (546)
.++..+...+...|++++|...+++.......+ ...... ..+..+...|++++|...+++.......+. ..
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 567788888999999999999999887532111 122221 233457799999999999998875432211 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 009011 408 TYNTMISSACARSEEENALKLLQKMEED----LCKPDC-ETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASL 482 (546)
Q Consensus 408 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 482 (546)
.+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++....... ...
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~------~g~ 328 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR------TGF 328 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------HCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc------ccH
Confidence 5667788899999999999999988543 222222 35666777888999999999999998763110 112
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCC
Q 009011 483 VRGLIESGKLELACSFFEEMISKG 506 (546)
Q Consensus 483 i~~~~~~g~~~~A~~~~~~m~~~g 506 (546)
+..+...| +....+++.+....
T Consensus 329 ~~~~~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 329 ISHFVIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp CHHHHTTH--HHHHHHHHHHHHTT
T ss_pred HHHHHHcc--HHHHHHHHHHHhCC
Confidence 23344444 55666666666543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-10 Score=98.49 Aligned_cols=163 Identities=13% Similarity=0.045 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 009011 199 TMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCK 278 (546)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 278 (546)
.+..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|.+.+++.....|.+..++..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34444445555555555555555554332 33444455555555555555555555555544444455555555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009011 279 TRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKV 358 (546)
Q Consensus 279 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 358 (546)
.|++++|.+.++++..... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 5666666665555554422 244555555555566666666666666555543 22445555566666666666666666
Q ss_pred HHHHHh
Q 009011 359 YEKMKS 364 (546)
Q Consensus 359 ~~~~~~ 364 (546)
++++.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=5.4e-10 Score=96.36 Aligned_cols=164 Identities=13% Similarity=0.089 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 233 RALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYC 312 (546)
Q Consensus 233 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 312 (546)
..+..+...+...|++++|.+.++++....|.+..++..+...+...|++++|...++++.+... .+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 34455555666667777777777666665566666677777777777777777777776665532 24556666666677
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009011 313 REKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANE 392 (546)
Q Consensus 313 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 392 (546)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777666553 2355566666666777777777777777666553 3355666666667777777777777
Q ss_pred HHHHHHH
Q 009011 393 IFEDMKK 399 (546)
Q Consensus 393 ~~~~~~~ 399 (546)
.++++.+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=8.6e-10 Score=107.56 Aligned_cols=228 Identities=10% Similarity=-0.025 Sum_probs=121.0
Q ss_pred HHHhcCChhHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-C-CCHHHHHHHH
Q 009011 310 HYCREKDFRKVDDTLKEMQEKG-CKPS----VITYTIVMHALGKAKQINEALKVYEKMKSD----DC-L-PDTSFYSSLI 378 (546)
Q Consensus 310 ~~~~~g~~~~a~~l~~~m~~~g-~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~-~~~~~~~~li 378 (546)
.+...|++++|...+++..+.. ..++ ..++..+...|...|+++.|...+.+..+. +. . ....+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 3445566666666666655321 0111 234555556666666666666666655432 10 0 1134555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 009011 379 FILSKAGRVKDANEIFEDMKKQ----GVVP-NVLTYNTMISSACARSEEENALKLLQKMEE-----DLCKPDCETYAPLL 448 (546)
Q Consensus 379 ~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~ll 448 (546)
.+|...|++++|.+.+++..+. +..+ ...+++.+...|...|++++|.+.+++..+ .. +....++..+.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHH
Confidence 6666666666666666655431 1000 123455566666666677777666666654 22 22245566666
Q ss_pred HHHHhcCChHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 009011 449 KMCCRKKRMKVLNFLLTHMFKND----VSMDAGTYASLVRGLIESGK---LELACSFFEEMISKGIVPY-HSTYKMLEEK 520 (546)
Q Consensus 449 ~~~~~~g~~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~ 520 (546)
..+.+.|+.++|...+++..+.. -......+..+...+...|+ +.+|...+++. +..|+ ...+..+...
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHH
Confidence 66667777777777776665521 11112334444444555566 55555555542 22222 2344456666
Q ss_pred HHhcChhhHHHHHHHHHHHHh
Q 009011 521 LEKKRLGNAKERINKLLAHAK 541 (546)
Q Consensus 521 ~~~~g~~~~a~~~~~~m~~~~ 541 (546)
|...|+.++|.+.++...+..
T Consensus 346 y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 677777777777776665543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-09 Score=106.33 Aligned_cols=231 Identities=11% Similarity=0.001 Sum_probs=153.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--C---CC-CHHH
Q 009011 270 NILIHGWCKTRKVDDAQKAMKEMFQQGF-SPD----VVSYTCFIEHYCREKDFRKVDDTLKEMQEKG--C---KP-SVIT 338 (546)
Q Consensus 270 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g--~---~p-~~~~ 338 (546)
......+...|++++|...|++..+... .++ ..++..+...|...|++++|...+++..+.. . .+ ...+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3344556677888888888887765411 112 3466677777888888888888887766431 1 11 2346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 009011 339 YTIVMHALGKAKQINEALKVYEKMKSD----DCL-PDTSFYSSLIFILSKAGRVKDANEIFEDMKK-----QGVVPNVLT 408 (546)
Q Consensus 339 ~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~ 408 (546)
+..+...|...|++++|.+.+.+..+. +.. ....++..+..+|...|++++|.+.+++..+ .... ...+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHH
Confidence 667778888888888888888776542 111 1234667778888888888888888888775 3322 3566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCC-CHHHHH
Q 009011 409 YNTMISSACARSEEENALKLLQKMEEDLC---KPD-CETYAPLLKMCCRKKR---MKVLNFLLTHMFKNDVSM-DAGTYA 480 (546)
Q Consensus 409 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~~-~~~~~~ 480 (546)
+..+...+.+.|++++|...+++..+... .+. ...+..+...+...++ .++|..+++.. +..+ ....+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~ 340 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHH
Confidence 77788888888899999888888766421 122 2345555555666777 66666666652 2221 234566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 009011 481 SLVRGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 481 ~li~~~~~~g~~~~A~~~~~~m~~ 504 (546)
.+...|...|++++|...|++..+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788888899999999999988764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.1e-10 Score=118.88 Aligned_cols=166 Identities=13% Similarity=0.094 Sum_probs=151.2
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLM 239 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 239 (546)
+..+|+.|..+|.+.|++++|++.|++..+ . .+.+..+|+.+...|.+.|++++|++.|++..+.. +.+..+|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~-l-~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE-V-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 467899999999999999999999999998 3 56788999999999999999999999999998764 56688999999
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRK 319 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 319 (546)
.++.+.|++++|.+.|++..+..|.+...|+.+...|.+.|++++|++.|++..+.... +...|..+...|...|++++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999998878889999999999999999999999999999987544 67889999999999999999
Q ss_pred HHHHHHHHHH
Q 009011 320 VDDTLKEMQE 329 (546)
Q Consensus 320 a~~l~~~m~~ 329 (546)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.24 E-value=7.7e-08 Score=99.63 Aligned_cols=393 Identities=8% Similarity=0.012 Sum_probs=267.3
Q ss_pred hhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC---hHHHH
Q 009011 141 LTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGR---YDDAV 217 (546)
Q Consensus 141 ~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~ 217 (546)
+......|.....+ .+.|..+|..++..+.+.+.++.+..+|+.+.. . .|.+...|..-+..-.+.|. ++.+.
T Consensus 48 ~~d~i~~lE~~l~~--np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~-~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 48 ESDVIGKLNDMIEE--QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHD-R-FPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CSCHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred CHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-H-CCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 34445444444432 357999999999999999999999999999998 4 77888999988999899999 99999
Q ss_pred HHHHHhhhCC-CCCCHHHHHHHHHHHHccCCH--------HHHHHHHHHhhc--CC--CCCHHHHHHHHHHHHh------
Q 009011 218 EAFRGMKKYG-VEKDTRALSVLMDTLVKGNSV--------EHAYKVFLEFKD--CI--PLSSQIFNILIHGWCK------ 278 (546)
Q Consensus 218 ~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~--------~~a~~~~~~~~~--~~--~~~~~~~~~li~~~~~------ 278 (546)
++|++..... ..|++..|..-+....+.++. +.+.++|+.... +. +.+..+|...+.....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 9999998753 148888888777765555443 344577776554 33 4466789888876543
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------------hhHHHHHHHHHHHc--CCC-------
Q 009011 279 ---TRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKD-------------FRKVDDTLKEMQEK--GCK------- 333 (546)
Q Consensus 279 ---~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-------------~~~a~~l~~~m~~~--g~~------- 333 (546)
.++++.+..+|++.+......-..+|......--..+. ++.|...+.++... ++.
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence 44678899999999864222122344333221111111 22334444443221 111
Q ss_pred --------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 334 --------P-----S---VITYTIVMHALGKAK-------QINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDA 390 (546)
Q Consensus 334 --------p-----~---~~~~~~li~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 390 (546)
| + ...|...+.---..+ ..+.+..+|++..... +-+...|...+..+...|+.++|
T Consensus 284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTH
T ss_pred ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHH
Confidence 1 1 133444444332222 1234567788887753 45788888888888889999999
Q ss_pred H-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCCC------------HHHHHHHH
Q 009011 391 N-EIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDL---------CKPD------------CETYAPLL 448 (546)
Q Consensus 391 ~-~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~p~------------~~~~~~ll 448 (546)
. ++|+..... ++.+...|...+....+.|++++|.++|+++.+.. -.|+ ...|...+
T Consensus 363 ~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 363 ITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence 6 999999863 34466667788888889999999999999987631 0132 23677778
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChh
Q 009011 449 KMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIES-GKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLG 527 (546)
Q Consensus 449 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 527 (546)
....+.|+.+.|..+|..+.+.........|...+..-.+. ++.+.|.++|+..++. +.-+...+...++.....|+.
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCH
Confidence 88888999999999999998861222334454444333444 4599999999999886 334556666788888888999
Q ss_pred hHHHHHHHHHHHH
Q 009011 528 NAKERINKLLAHA 540 (546)
Q Consensus 528 ~~a~~~~~~m~~~ 540 (546)
+.|..+|+...+.
T Consensus 521 ~~AR~lferal~~ 533 (679)
T 4e6h_A 521 SQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999986543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=5.1e-10 Score=117.22 Aligned_cols=169 Identities=11% Similarity=0.033 Sum_probs=148.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 009011 193 GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNIL 272 (546)
Q Consensus 193 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 272 (546)
.|.+..+|+.+...|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|.+.|++..+..|.+..+|+.+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45567889999999999999999999999998764 55688899999999999999999999999888788889999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 009011 273 IHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQI 352 (546)
Q Consensus 273 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 352 (546)
...|.+.|++++|++.|++..+.... +...|+.+...|.+.|++++|++.|++..+.... +...+..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccH
Confidence 99999999999999999999887543 6788999999999999999999999999887432 677889999999999999
Q ss_pred HHHHHHHHHHHh
Q 009011 353 NEALKVYEKMKS 364 (546)
Q Consensus 353 ~~a~~~~~~~~~ 364 (546)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988887654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=7.9e-09 Score=92.76 Aligned_cols=193 Identities=10% Similarity=-0.004 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 009011 301 VVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFI 380 (546)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 380 (546)
...+......+...|++++|...|++..+....++...+..+..++...|++++|.+.+++..+.. +.+..++..+..+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 344444444555555555555555555544332344444445555555555555555555555443 2234455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 009011 381 LSKAGRVKDANEIFEDMKKQGVVPNV-------LTYNTMISSACARSEEENALKLLQKMEEDLCKPD---CETYAPLLKM 450 (546)
Q Consensus 381 ~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~ 450 (546)
|...|++++|...+++..+... .+. ..|..+...+...|++++|.+.+++..+. .|+ ...+..+...
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHH
Confidence 5555555555555555554321 122 23444555555666666666666666554 333 2344444444
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 451 CCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 451 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
+... +..+++++...+.. +...|.... ....+.+++|...+++..+.
T Consensus 163 ~~~~-----~~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 163 FYNN-----GADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHH-----HHHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 4332 22333443333221 233333322 22345567777777777654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.14 E-value=6.6e-09 Score=93.26 Aligned_cols=132 Identities=8% Similarity=-0.008 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 009011 198 ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWC 277 (546)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 277 (546)
..+......+.+.|++++|++.|++..+...+++...+..+..++...|++++|.+.+++.....|.+..++..+...|.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 44444444444444444444444444443211344444444444444455555555554444444444444555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009011 278 KTRKVDDAQKAMKEMFQQGFSPDV-------VSYTCFIEHYCREKDFRKVDDTLKEMQEK 330 (546)
Q Consensus 278 ~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 330 (546)
..|++++|...+++..+..+. +. ..|..+...+...|++++|.+.|++..+.
T Consensus 88 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 555555555555554443221 22 23444444455555555555555555443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.13 E-value=5.9e-10 Score=103.42 Aligned_cols=205 Identities=11% Similarity=0.072 Sum_probs=126.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC------CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC-----
Q 009011 194 YVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY------GV-EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDC----- 261 (546)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----- 261 (546)
+....++..+...+...|++++|++.|++..+. +- +....++..+..++...|++++|.+.+.+....
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 344666777777777777777777777776542 11 223456677777777778888877777665432
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-
Q 009011 262 ---IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ------GFSP-DVVSYTCFIEHYCREKDFRKVDDTLKEMQEK- 330 (546)
Q Consensus 262 ---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~- 330 (546)
.+....++..+...|...|++++|...+++..+. +..| ...++..+...|...|++++|...+++..+.
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2334566778888888888888888888887654 1122 3456777888888888888888888877653
Q ss_pred ------CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 331 ------GCKPS-VITYTIVMHALGKAKQ------INEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDM 397 (546)
Q Consensus 331 ------g~~p~-~~~~~~li~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 397 (546)
...+. ...+..+...+...+. +..+...+..... ..+....++..+...|...|++++|...+++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 200 HEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11111 1223333333332222 2222222222111 11224567788888999999999999999887
Q ss_pred HH
Q 009011 398 KK 399 (546)
Q Consensus 398 ~~ 399 (546)
.+
T Consensus 279 l~ 280 (283)
T 3edt_B 279 SR 280 (283)
T ss_dssp HT
T ss_pred HH
Confidence 65
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.13 E-value=5.3e-10 Score=103.74 Aligned_cols=202 Identities=13% Similarity=0.079 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C-C
Q 009011 302 VSYTCFIEHYCREKDFRKVDDTLKEMQEK------GCKP-SVITYTIVMHALGKAKQINEALKVYEKMKSD------D-C 367 (546)
Q Consensus 302 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~-~ 367 (546)
.++..+...|...|++++|...+++..+. +..| ...++..+...|...|++++|.+.+.+..+. . .
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444444555555555555555444432 1111 2334455555555555555555555554432 1 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 009011 368 LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ------GVVP-NVLTYNTMISSACARSEEENALKLLQKMEED----- 435 (546)
Q Consensus 368 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 435 (546)
+....++..+...|...|++++|.+.+++..+. +..| ...++..+...+...|++++|..+++++.+.
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 123445555666666666666666666665542 1011 2345556666666677777777777666542
Q ss_pred --CCCCCH-HHHHHHHHHHHhcCChH------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009011 436 --LCKPDC-ETYAPLLKMCCRKKRMK------VLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 436 --~~~p~~-~~~~~ll~~~~~~g~~~------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (546)
...+.. ..+..+...+...+... .+...++.... .......++..+...|...|++++|..++++..+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111221 12222222222222211 11111111111 1111344566777777788888888888877664
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=4.3e-09 Score=98.53 Aligned_cols=193 Identities=13% Similarity=0.065 Sum_probs=106.4
Q ss_pred HHhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CC--CHHHHHHHHHH
Q 009011 311 YCREKDFRKVDDTLKEMQEK----GCKPS-VITYTIVMHALGKAKQINEALKVYEKMKSDDC---LP--DTSFYSSLIFI 380 (546)
Q Consensus 311 ~~~~g~~~~a~~l~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~ 380 (546)
|...|++++|.+.|.+..+. |..++ ..+|+.+..+|.+.|++++|+..|++..+... .+ -..+++.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455555555555444332 11111 23455555556666666666665555543210 01 13456666677
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHH
Q 009011 381 LSKA-GRVKDANEIFEDMKKQGVVP-N----VLTYNTMISSACARSEEENALKLLQKMEEDLCKPDC------ETYAPLL 448 (546)
Q Consensus 381 ~~~~-g~~~~A~~~~~~~~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~ll 448 (546)
|... |++++|...|++..+..... + ..+++.+...+...|++++|+..|++..+....... .+|..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 7774 77777777777665421100 1 245666777777778888888888777765322211 1455666
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCC-C---HHHHHHHHHHHH--HcCChHHHHHHHHHHH
Q 009011 449 KMCCRKKRMKVLNFLLTHMFKNDVSM-D---AGTYASLVRGLI--ESGKLELACSFFEEMI 503 (546)
Q Consensus 449 ~~~~~~g~~~~a~~~~~~m~~~~~~~-~---~~~~~~li~~~~--~~g~~~~A~~~~~~m~ 503 (546)
.++...|++++|...+++..+..+.. + ...+..++.++. ..+++++|+..|+.+.
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 67777788888888887776633221 1 112344455553 3466777777776654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.05 E-value=9.9e-09 Score=83.01 Aligned_cols=128 Identities=16% Similarity=0.186 Sum_probs=68.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 009011 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLV 243 (546)
Q Consensus 164 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 243 (546)
|..+...+...|++++|.++|+++.+. .+.+...+..+...+...|++++|...|+++.+.+ +.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 445555556666666666666665542 33345555555555556666666666666555432 334444455555555
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 244 KGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 244 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (546)
..|++++|.+.++++....|.+..++..+...+.+.|++++|...++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555554443444444555555555555555555555555443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.05 E-value=9.3e-08 Score=87.99 Aligned_cols=144 Identities=8% Similarity=0.077 Sum_probs=64.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 285 AQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGC-KPSVITYTIVMHALGKAKQINEALKVYEKMK 363 (546)
Q Consensus 285 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 363 (546)
|...|++....+ .++..++..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444333 22333334444555555555555555555444332 1133444455555555555555555555554
Q ss_pred hCCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 364 SDDCLP-----DTSFYSSLIFIL--SKAG--RVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKME 433 (546)
Q Consensus 364 ~~~~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 433 (546)
+. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43 23 123333333331 1112 555555555555433 2332222223334555555555555555443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.6e-08 Score=81.73 Aligned_cols=129 Identities=14% Similarity=0.211 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 009011 199 TMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCK 278 (546)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 278 (546)
.+..+...+...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|...++++....+.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 34555666666677777777776665543 34455555566666666666666666666555445555556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009011 279 TRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQE 329 (546)
Q Consensus 279 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (546)
.|++++|.+.++++...... +...+..+...+.+.|++++|...++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666665554321 344555555555555555555555555544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.3e-07 Score=83.81 Aligned_cols=217 Identities=10% Similarity=-0.046 Sum_probs=117.6
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHhhcCCCCCHHHHHHHHHHH----Hhc---CCHHH
Q 009011 214 DDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGN--SVEHAYKVFLEFKDCIPLSSQIFNILIHGW----CKT---RKVDD 284 (546)
Q Consensus 214 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~~ 284 (546)
++|+++++.+...+ +-+..+++.--.++...| +++++.+.++.+....|.+..+|+.--..+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 34555555444432 223333444444444444 555555555555544455555554443333 333 45666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------HHHHH
Q 009011 285 AQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFR--KVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQ------INEAL 356 (546)
Q Consensus 285 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~------~~~a~ 356 (546)
++.+++.+.+...+ +..+|+.-.-.+.+.|.++ ++++.++.+.+.... |...|+.-...+.+.+. +++++
T Consensus 129 EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 129 EFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 66666666655433 5555655555555556655 666666666665433 55555555455555444 66666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 357 KVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKD-ANEIFEDMKKQG--VVPNVLTYNTMISSACARSEEENALKLLQKME 433 (546)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 433 (546)
+.++.+.... +-|...|+.+-..+.+.|+... +.++..++.+.+ -..+...+..+...+.+.|+.++|.++++.+.
T Consensus 207 ~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 207 NYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 6666666654 3466666666666666665332 444444443321 12355666666666666777777777777766
Q ss_pred H
Q 009011 434 E 434 (546)
Q Consensus 434 ~ 434 (546)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.6e-08 Score=91.47 Aligned_cols=211 Identities=11% Similarity=-0.005 Sum_probs=123.9
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC-C-CCHH
Q 009011 159 HTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVS---LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGV-E-KDTR 233 (546)
Q Consensus 159 ~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~-~~~~ 233 (546)
.+...+-.+...+.+.|++++|.+.|+++.+. .+.+ ..++..+...+.+.|++++|+..|++..+... . ....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 34566667777788888888888888888773 3333 67777888888888888888888888876421 1 2244
Q ss_pred HHHHHHHHHHc--------cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 009011 234 ALSVLMDTLVK--------GNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYT 305 (546)
Q Consensus 234 ~~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 305 (546)
++..+..++.. .|++++|...|+++....|.+......+.... .+... -...+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~--------------~~~~~----~~~~~~ 152 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIR--------------ELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHH--------------HHHHH----HHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHH--------------HHHHH----HHHHHH
Confidence 56666667777 78888888888777765555544432221110 00000 011134
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCC--H
Q 009011 306 CFIEHYCREKDFRKVDDTLKEMQEKGCKP--SVITYTIVMHALGKA----------KQINEALKVYEKMKSDDCLPD--T 371 (546)
Q Consensus 306 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~~--~ 371 (546)
.+...|.+.|++++|...|+.+.+..... ....+..+..+|... |++++|...|+++.+...... .
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 45556666677777777776666542211 233455555566544 666777777777665431111 2
Q ss_pred HHHHHHHHHHHhcCCHHH
Q 009011 372 SFYSSLIFILSKAGRVKD 389 (546)
Q Consensus 372 ~~~~~li~~~~~~g~~~~ 389 (546)
.....+-..+.+.+++++
T Consensus 233 ~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 233 TAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 334444444444444443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-07 Score=86.84 Aligned_cols=246 Identities=10% Similarity=0.085 Sum_probs=159.0
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVD 321 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 321 (546)
.--.|++..+..-...+.. ......-.-+.++|...|+.... ....|....+..+.. |...+ ++
T Consensus 23 ~fy~G~yq~~i~e~~~~~~--~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~----a~ 86 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSK--VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK----NI 86 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSC--CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----CC
T ss_pred HHHhhHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----HH
Confidence 3446777777663333322 11223333455777777776531 112234334333333 33322 66
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 322 DTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDC-LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQ 400 (546)
Q Consensus 322 ~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 400 (546)
..+++....+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7777776655 44566666788888888999999999988876653 236677888888899999999999999988764
Q ss_pred CCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009011 401 GVVP-----NVLTYNTMISSA--CARS--EEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKND 471 (546)
Q Consensus 401 ~~~p-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 471 (546)
.| +..+...++.++ ...| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.+..
T Consensus 166 --~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 166 --IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred --CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 35 245556666663 3334 888999999998665 4654444455558888999999999988765531
Q ss_pred ---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 009011 472 ---------VSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHS 512 (546)
Q Consensus 472 ---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 512 (546)
-.-|..++..+|......|+ +|.++++++.+.. |+..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~--P~hp 287 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD--HEHA 287 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT--CCCH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC--CCCh
Confidence 02266677566666666776 7888888888654 5544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.1e-08 Score=90.13 Aligned_cols=210 Identities=14% Similarity=0.067 Sum_probs=137.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCC---CCHH
Q 009011 194 YVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKD---TRALSVLMDTLVKGNSVEHAYKVFLEFKDCIP---LSSQ 267 (546)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~ 267 (546)
+.+...+..+...+.+.|++++|++.|+++.+.. +.+ ...+..+..++...|++++|...|+++....| ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4456667777777888888888888888887643 223 56677777778888888888888877766433 2345
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 009011 268 IFNILIHGWCK--------TRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITY 339 (546)
Q Consensus 268 ~~~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~ 339 (546)
.+..+..++.. .|++++|...|+++.+..+. +......+. .+..+... -...+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~--------------~~~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQ--------------KIRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHH--------------HHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHH--------------HHHHHHHH----HHHHH
Confidence 56677777777 77888888888877765322 111111111 11111100 01124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCH-
Q 009011 340 TIVMHALGKAKQINEALKVYEKMKSDDCL--PDTSFYSSLIFILSKA----------GRVKDANEIFEDMKKQGVVPNV- 406 (546)
Q Consensus 340 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~- 406 (546)
..+...|.+.|++++|...|+++.+.... .....+..+..+|... |++++|...|+++.+.. |+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~ 229 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PDSP 229 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TTCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CCCh
Confidence 56788899999999999999999876422 1345777888888866 89999999999998754 432
Q ss_pred ---HHHHHHHHHHHhcCCHHHH
Q 009011 407 ---LTYNTMISSACARSEEENA 425 (546)
Q Consensus 407 ---~~~~~li~~~~~~g~~~~A 425 (546)
.....+-..+...++.+++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 3444455555555555443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.9e-08 Score=86.77 Aligned_cols=73 Identities=14% Similarity=0.142 Sum_probs=33.7
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009011 238 LMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHY 311 (546)
Q Consensus 238 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 311 (546)
+..++.+.|++++|...|++.....|.+...+..+...+...|++++|...|++..+..+. +..+|..+...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~ 132 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 4444444455555554444444444444444444555555555555555555544443222 334444444443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.93 E-value=7.4e-07 Score=82.80 Aligned_cols=229 Identities=5% Similarity=-0.016 Sum_probs=177.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH-
Q 009011 166 TMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGG--RYDDAVEAFRGMKKYGVEKDTRALSVLMDTL- 242 (546)
Q Consensus 166 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~- 242 (546)
.+.....+....++|+++++.+.. - .|....+|+.--..+...| ++++++++++.+.... +.+..+++.-..++
T Consensus 38 ~~~a~~~~~e~s~~aL~~t~~~L~-~-nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~ 114 (306)
T 3dra_A 38 LLLALMKAEEYSERALHITELGIN-E-LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIG 114 (306)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHH-H-CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHH
Confidence 333444455556789999999888 3 6777888888888888888 9999999999998764 44555555444444
Q ss_pred ---Hcc---CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009011 243 ---VKG---NSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVD--DAQKAMKEMFQQGFSPDVVSYTCFIEHYCRE 314 (546)
Q Consensus 243 ---~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 314 (546)
... ++++++.++++.+....|.+..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+...
T Consensus 115 ~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 115 QIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSK 193 (306)
T ss_dssp HHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSS
T ss_pred HHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 444 78899999999998888899999998888888888888 999999999987665 788888777777777
Q ss_pred CC------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 009011 315 KD------FRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQIN-EALKVYEKMKSDD--CLPDTSFYSSLIFILSKAG 385 (546)
Q Consensus 315 g~------~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g 385 (546)
|. ++++++.++.+...... |...|+-.-..+.+.|+.. .+..+..++.+.+ -+.+...+..+...|.+.|
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred cccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 76 88899999998887544 7888888888888887743 3555666655432 1347788889999999999
Q ss_pred CHHHHHHHHHHHHH
Q 009011 386 RVKDANEIFEDMKK 399 (546)
Q Consensus 386 ~~~~A~~~~~~~~~ 399 (546)
+.++|.++++.+.+
T Consensus 273 ~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 273 KYNESRTVYDLLKS 286 (306)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999886
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.93 E-value=5.1e-08 Score=86.03 Aligned_cols=171 Identities=9% Similarity=-0.014 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHH----------------HHHHHHhcCChHHHHHHHHHhhh
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMST----------------IMRRLVRGGRYDDAVEAFRGMKK 225 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~ 225 (546)
..+-.....+...|++++|...|++..+. .+.+...|.. +...+.+.|++++|+..|++..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33445566778899999999999999883 4555667777 89999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHH
Q 009011 226 YGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRK--VDDAQKAMKEMFQQGFSPDVVS 303 (546)
Q Consensus 226 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~ 303 (546)
.. +.+...+..+..++...|++++|...|++.....|.+..++..+...|...|+ ...+...++.... ..|....
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a 159 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA 159 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence 64 66788999999999999999999999999988888899999999998876654 3445555555432 2222333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 009011 304 YTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITY 339 (546)
Q Consensus 304 ~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~ 339 (546)
+.....++...|++++|...|++..+. .|+....
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~ 193 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQ 193 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHH
Confidence 444455566678888888888887764 4555433
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=2.8e-08 Score=92.94 Aligned_cols=205 Identities=10% Similarity=0.050 Sum_probs=106.0
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhC---CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009011 165 NTMVDVLGKSKKFCLMWELVKEMDELN---NGYV-SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMD 240 (546)
Q Consensus 165 ~~ll~~~~~~~~~~~a~~l~~~m~~~~---~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 240 (546)
......|...|++++|.+.|++..... ..+. ...+|+.+...|.+.|++++|+..|++..+.
T Consensus 41 ~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l-------------- 106 (292)
T 1qqe_A 41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI-------------- 106 (292)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------------
Confidence 334455666677777776666554421 0111 1345666666666666666666666655431
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhc
Q 009011 241 TLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKT-RKVDDAQKAMKEMFQQGFSP-D----VVSYTCFIEHYCRE 314 (546)
Q Consensus 241 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~~-~----~~~~~~li~~~~~~ 314 (546)
+...|+...+ ..+++.+...|... |++++|...|++..+..... + ..++..+...|.+.
T Consensus 107 -~~~~g~~~~~--------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~ 171 (292)
T 1qqe_A 107 -FTHRGQFRRG--------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD 171 (292)
T ss_dssp -HHHTTCHHHH--------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -HHHcCCHHHH--------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 0111111111 23455556666664 66666666666654421100 1 23466666667777
Q ss_pred CChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC---HHHHHHHHHHHH--
Q 009011 315 KDFRKVDDTLKEMQEKGCKPSV------ITYTIVMHALGKAKQINEALKVYEKMKSDDCL-PD---TSFYSSLIFILS-- 382 (546)
Q Consensus 315 g~~~~a~~l~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~---~~~~~~li~~~~-- 382 (546)
|++++|...|++..+....... ..+..+..++...|++++|...|++..+.... ++ ...+..++..|.
T Consensus 172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~ 251 (292)
T 1qqe_A 172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEG 251 (292)
T ss_dssp TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcC
Confidence 7777777777766654322111 14555666666777777777777766553211 01 112333444443
Q ss_pred hcCCHHHHHHHHHHHH
Q 009011 383 KAGRVKDANEIFEDMK 398 (546)
Q Consensus 383 ~~g~~~~A~~~~~~~~ 398 (546)
..+++++|...|+.+.
T Consensus 252 ~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 252 DSEQLSEHCKEFDNFM 267 (292)
T ss_dssp CTTTHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHhccCC
Confidence 3455666766666554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.8e-08 Score=86.39 Aligned_cols=163 Identities=9% Similarity=0.027 Sum_probs=114.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH-
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDT- 241 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~- 241 (546)
.+..+...+.+.|++++|...|++..+ . .+.+...+..+...+.+.|++++|+..|++..+.. |+......+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~-~-~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSD-E-LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCH-H-HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-H-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH
Confidence 345566778888888888888888766 3 56677888888888888888888888888876543 354433322211
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHH
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSP-DVVSYTCFIEHYCREKDFRKV 320 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a 320 (546)
+...+....|...+++.....|.+...+..+...+...|++++|...|+++.+..+.+ +...+..+...+...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 1122222345667777666667778888888888888888888888888887765432 345677777888888888888
Q ss_pred HHHHHHHHH
Q 009011 321 DDTLKEMQE 329 (546)
Q Consensus 321 ~~l~~~m~~ 329 (546)
...|++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887776543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-08 Score=106.45 Aligned_cols=173 Identities=8% Similarity=-0.030 Sum_probs=105.4
Q ss_pred HhcCChHHHHHHHHHhh--------hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 009011 208 VRGGRYDDAVEAFRGMK--------KYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKT 279 (546)
Q Consensus 208 ~~~g~~~~A~~~~~~m~--------~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 279 (546)
...|++++|++.|++.. +.. +.+...+..+..++...|++++|.+.|++..+..|.+...|..+...|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 45566666666666665 221 344555666666666666666666666666655566666677777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 280 RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVY 359 (546)
Q Consensus 280 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 359 (546)
|++++|...|++..+.... +...|..+..+|.+.|++++ .+.|++..+.+.. +...+..+..++.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777777776665332 45566666666777777777 7777766665322 5556666667777777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcC
Q 009011 360 EKMKSDDCLPDTSFYSSLIFILSKAG 385 (546)
Q Consensus 360 ~~~~~~~~~~~~~~~~~li~~~~~~g 385 (546)
++..+.+ +.+...+..+..++...+
T Consensus 558 ~~al~l~-P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 558 DEVPPTS-RHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HTSCTTS-TTHHHHHHHHHHHTC---
T ss_pred HhhcccC-cccHHHHHHHHHHHHccC
Confidence 7666543 223445555555554433
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.89 E-value=1e-05 Score=81.15 Aligned_cols=354 Identities=8% Similarity=-0.067 Sum_probs=196.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHhhh-CCC-CCCHHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGR-YDDAVEAFRGMKK-YGV-EKDTRALSVLM 239 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~-~~~-~~~~~~~~~ll 239 (546)
+|...+..+-. |+++.+..+|+.... ..|+...|..-+....+.+. .+....+|+.... .|. ..+...|...+
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~---~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLK---KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHST---TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 34444444433 566666666666665 33466666666655555542 2344555555543 232 23445555555
Q ss_pred HHHH----ccCCHHHHHHHHHHhhcCCCCC-H-HHHHHHHHHHH-------------hcCCHHHHHHHHHHHHHCCCCCC
Q 009011 240 DTLV----KGNSVEHAYKVFLEFKDCIPLS-S-QIFNILIHGWC-------------KTRKVDDAQKAMKEMFQQGFSPD 300 (546)
Q Consensus 240 ~~~~----~~g~~~~a~~~~~~~~~~~~~~-~-~~~~~li~~~~-------------~~g~~~~a~~~~~~m~~~g~~~~ 300 (546)
..+. ..++++.+.++|++... .|.. . ..|......-. ..+.+..|..+++.+...-...+
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 4432 13455666666666554 2222 1 11211111100 01123334444444332100013
Q ss_pred HHHHHHHHHHHHhcC--C-----hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 009011 301 VVSYTCFIEHYCREK--D-----FRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSF 373 (546)
Q Consensus 301 ~~~~~~li~~~~~~g--~-----~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 373 (546)
...|...+.--...+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+.|.++|++.... +.+...
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l 248 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFL 248 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHH
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHH
Confidence 345555444322211 1 345677888888753 446777888888888899999999999998887 334333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009011 374 YSSLIFILSKAGRVKDANEIFEDMKKQG---------VVP---NVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDC 441 (546)
Q Consensus 374 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 441 (546)
+. .|....+.++. ++.+.+.- ..+ ....|...+....+.++.+.|..+|++. +.. ..+.
T Consensus 249 ~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~ 319 (493)
T 2uy1_A 249 SL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGP 319 (493)
T ss_dssp HH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCH
T ss_pred HH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCCh
Confidence 32 22222222222 22222110 001 1245666677666778899999999998 321 2344
Q ss_pred HHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009011 442 ETYAPLLKMCCR-KKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEK 520 (546)
Q Consensus 442 ~~~~~ll~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 520 (546)
..|......-.. .++.+.|..+|+...+.-.. +...+...++...+.|+.+.|..+|+.+. .....|...++.
T Consensus 320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~f 393 (493)
T 2uy1_A 320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEY 393 (493)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 445432222222 34699999999998885332 45567778888888999999999999972 246677777776
Q ss_pred HHhcChhhHHHHHHHHHHH
Q 009011 521 LEKKRLGNAKERINKLLAH 539 (546)
Q Consensus 521 ~~~~g~~~~a~~~~~~m~~ 539 (546)
-...|+.+.+.++++...+
T Consensus 394 E~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 394 EFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6777999999887766653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-08 Score=106.02 Aligned_cols=182 Identities=9% Similarity=-0.023 Sum_probs=140.4
Q ss_pred cCCHHHHHHHHHHhh--------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009011 245 GNSVEHAYKVFLEFK--------DCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKD 316 (546)
Q Consensus 245 ~g~~~~a~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 316 (546)
.|+.++|.+.+++.. ...|.+...+..+...+.+.|++++|.+.|++..+.... +...|..+..+|...|+
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~ 482 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLTGD 482 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHcCC
Confidence 367888888888877 566778888999999999999999999999998876443 67788888888999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009011 317 FRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFED 396 (546)
Q Consensus 317 ~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 396 (546)
+++|.+.|++..+.... +...+..+..++.+.|++++ ++.|++..+.+ +.+...|..+..+|.+.|++++|.+.|++
T Consensus 483 ~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 559 (681)
T 2pzi_A 483 YDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDE 559 (681)
T ss_dssp HHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 99999999998877432 56678888888999999999 99999988765 44677888888999999999999999998
Q ss_pred HHHCCCCCC-HHHHHHHHHHHHhcCC--------HHHHHHHHHHH
Q 009011 397 MKKQGVVPN-VLTYNTMISSACARSE--------EENALKLLQKM 432 (546)
Q Consensus 397 ~~~~~~~p~-~~~~~~li~~~~~~g~--------~~~A~~~~~~m 432 (546)
..+.. |+ ...+..+..++...++ +++|.+.+..+
T Consensus 560 al~l~--P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 560 VPPTS--RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp SCTTS--TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred hcccC--cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 87643 44 4566666666655443 45555555444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.9e-07 Score=83.41 Aligned_cols=189 Identities=10% Similarity=0.001 Sum_probs=125.7
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-CCH-HHHH
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYV-SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVE-KDT-RALS 236 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~-~~~~ 236 (546)
+...+..+...+.+.|++++|.+.|+++.+..+..+ ....+..+...+.+.|++++|++.|+++.+.... +.. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344556677888899999999999999987542222 2467888899999999999999999998765311 111 2344
Q ss_pred HHHHHHHc------------------cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 237 VLMDTLVK------------------GNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFS 298 (546)
Q Consensus 237 ~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 298 (546)
.+..++.. .|+.++|...|+++....|.+...+.+...... +...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~----------~~~~~------ 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF----------LKDRL------ 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH----------HHHHH------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH----------HHHHH------
Confidence 44444433 466777777777777666666544433221100 00000
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009011 299 PDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKP--SVITYTIVMHALGKAKQINEALKVYEKMKSDD 366 (546)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 366 (546)
......+...|.+.|++++|...|+.+.+..... ....+..+..++.+.|+.++|.+.++.+...+
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0111345667888899999999999988763221 12467778889999999999999999888764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-08 Score=84.99 Aligned_cols=111 Identities=12% Similarity=0.025 Sum_probs=50.8
Q ss_pred HHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHH
Q 009011 171 LGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEH 250 (546)
Q Consensus 171 ~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 250 (546)
+...|++++|+..++.... . .+.+...+..+...|.+.|++++|++.|++..+.. +.+..++..+..++...|++++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~-~-~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP-S-PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC-S-HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcChHHHHHHHHHHhcc-c-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 3344445555555544433 1 22223333344445555555555555555544432 3344444444444444555555
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 009011 251 AYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDD 284 (546)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 284 (546)
|...|++..+..|.+..++..+...|.+.|+.++
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Confidence 5555444444444444444444444444444443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.7e-08 Score=84.32 Aligned_cols=156 Identities=11% Similarity=0.031 Sum_probs=78.3
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChh
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEH-YCREKDFR 318 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~ 318 (546)
..+...|++++|...|++.....|.+...+..+...+...|++++|...+++...... +...+..+... +...++..
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~ 91 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQAAES 91 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhcccc
Confidence 3344445555555555444444444455555555555555555555555555443321 22222111111 11222233
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 319 KVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLP-DTSFYSSLIFILSKAGRVKDANEIFEDM 397 (546)
Q Consensus 319 ~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 397 (546)
++...+++..+.. +-+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|...|++.
T Consensus 92 ~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 92 PELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 4555566555542 1245556666666666666666666666666554221 2445666666666666666666666655
Q ss_pred H
Q 009011 398 K 398 (546)
Q Consensus 398 ~ 398 (546)
.
T Consensus 171 l 171 (176)
T 2r5s_A 171 L 171 (176)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.7e-07 Score=80.03 Aligned_cols=175 Identities=10% Similarity=-0.008 Sum_probs=87.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 009011 320 VDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAG----RVKDANEIFE 395 (546)
Q Consensus 320 a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~ 395 (546)
|.+.|++..+.| +...+..+...|...+++++|.++|++..+.| +...+..+...|.. + ++++|.+.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 334444444443 34444445555555555555555555555543 33444444444444 4 5555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHHH
Q 009011 396 DMKKQGVVPNVLTYNTMISSACA----RSEEENALKLLQKMEEDLCK-PDCETYAPLLKMCCR----KKRMKVLNFLLTH 466 (546)
Q Consensus 396 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~----~g~~~~a~~~~~~ 466 (546)
+..+.| +...+..+...|.. .+++++|.++|++..+.|.. .+...+..|...|.. .++.++|..++++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 555432 34444444444444 45556666666555554310 013445555555555 5556666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHHCC
Q 009011 467 MFKNDVSMDAGTYASLVRGLIES-G-----KLELACSFFEEMISKG 506 (546)
Q Consensus 467 m~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g 506 (546)
..+.+ .+...+..+...|... | ++++|..+|++..+.|
T Consensus 155 A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 55541 1233444455555432 2 5666666666666555
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=8.8e-08 Score=89.21 Aligned_cols=166 Identities=10% Similarity=0.030 Sum_probs=126.2
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHH
Q 009011 159 HTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVL 238 (546)
Q Consensus 159 ~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 238 (546)
.+...+..+...+.+.|++++|...|++..+ . .+.+...+..+...+.+.|++++|++.|++.... .|+.......
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~-~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQ-L-SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHH-h-CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 4455667788888888999999999988887 3 5667888888888888999999999998888654 3454433322
Q ss_pred -HHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 009011 239 -MDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSP-DVVSYTCFIEHYCREKD 316 (546)
Q Consensus 239 -l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~ 316 (546)
...+...++.+.|...+++.....|.+...+..+...+...|++++|...|.++.+..+.. +...+..+...|...|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 2235566777778888888777778888888888888888888888888888888764332 25677888888888888
Q ss_pred hhHHHHHHHHHH
Q 009011 317 FRKVDDTLKEMQ 328 (546)
Q Consensus 317 ~~~a~~l~~~m~ 328 (546)
.++|...+++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 888888777654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-07 Score=97.99 Aligned_cols=133 Identities=11% Similarity=-0.028 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLM 239 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 239 (546)
+...|..+...+.+.|++++|.+.|++..+ . .+.+...+..+...|.+.|++++|++.|++..+.. +.+...+..+.
T Consensus 22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 98 (568)
T 2vsy_A 22 DFVAWLMLADAELGMGDTTAGEMAVQRGLA-L-HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLG 98 (568)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-T-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 344555555555555555555555555554 2 33445555555555555555555555555554432 33344555555
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKT---RKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~ 295 (546)
.++...|+.++|.+.+++..+..|.+...+..+...+... |+.++|.+.+++..+.
T Consensus 99 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 99 HALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 5555555555555555555444444455555555555555 5555555555555444
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2.6e-08 Score=82.77 Aligned_cols=57 Identities=12% Similarity=0.042 Sum_probs=21.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009011 271 ILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQ 328 (546)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 328 (546)
.+...|.+.|++++|.+.|++..+..+. +..+|..+..+|.+.|++++|...|++..
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al 92 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSV 92 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 3333344444444444444433333221 23333333333333333333333333333
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.81 E-value=6.4e-07 Score=79.18 Aligned_cols=128 Identities=16% Similarity=0.171 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHHHHHHcCCCCCHHHHH
Q 009011 265 SSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK----DFRKVDDTLKEMQEKGCKPSVITYT 340 (546)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~a~~l~~~m~~~g~~p~~~~~~ 340 (546)
++..+..|...|...+++++|...|++..+.| +...+..|-..|.. + ++++|.++|++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44455555555555555555555555555442 33444444444444 3 4555555555554443 333444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 009011 341 IVMHALGK----AKQINEALKVYEKMKSDDCL-PDTSFYSSLIFILSK----AGRVKDANEIFEDMKK 399 (546)
Q Consensus 341 ~li~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~ 399 (546)
.+...|.. .+++++|.++|++..+.+.. .+...+..|..+|.. .+++++|...|++..+
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 44444443 44555555555554444310 013344444444444 4445555555554444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.81 E-value=4.5e-07 Score=81.01 Aligned_cols=187 Identities=7% Similarity=-0.033 Sum_probs=127.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-C-CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHH---HHH
Q 009011 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVE-K-DTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQ---IFN 270 (546)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~ 270 (546)
+...+..+...+.+.|++++|+..|+++.+.... + ....+..+..++.+.|++++|...|+++.+..|.+.. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455666778889999999999999999874311 1 1457778888999999999999999998776555543 455
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 009011 271 ILIHGWCK------------------TRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGC 332 (546)
Q Consensus 271 ~li~~~~~------------------~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 332 (546)
.+..++.+ .|+.++|...|+++.+..+. +...+..... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~----------l~~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKR----------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHH----------HHHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHH----------HHHHHHHHH----
Confidence 55555544 45677777777777665322 1112211110 000001100
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009011 333 KPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLP--DTSFYSSLIFILSKAGRVKDANEIFEDMKKQG 401 (546)
Q Consensus 333 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 401 (546)
.....+...+.+.|++++|...|+++.+..... ....+..+..+|.+.|+.++|.+.++.+...+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 112346678899999999999999998864221 13568889999999999999999999998764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.5e-07 Score=87.60 Aligned_cols=163 Identities=12% Similarity=0.033 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHH
Q 009011 232 TRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYT-CFIEH 310 (546)
Q Consensus 232 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~ 310 (546)
...+..+...+...|+.++|...|++.....|.+...+..+...+.+.|++++|...++++.... |+..... .....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~ 194 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHH
Confidence 33444444555555666666666655555555556666666666666666666666666554432 2322211 12223
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHH
Q 009011 311 YCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCL-PDTSFYSSLIFILSKAGRVKD 389 (546)
Q Consensus 311 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~ 389 (546)
+...++.++|...+++..... +.+...+..+...+...|++++|...|.++.+.... .+...+..++..|...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 445555566666666655543 224555566666666666666666666666654311 124555666666666666666
Q ss_pred HHHHHHHH
Q 009011 390 ANEIFEDM 397 (546)
Q Consensus 390 A~~~~~~~ 397 (546)
|...+++.
T Consensus 274 a~~~~r~a 281 (287)
T 3qou_A 274 LASXYRRQ 281 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.3e-07 Score=97.45 Aligned_cols=154 Identities=10% Similarity=-0.021 Sum_probs=102.9
Q ss_pred CCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 009011 174 SKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYK 253 (546)
Q Consensus 174 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 253 (546)
.|++++|.+.|++..+ . .+.+...+..+...+.+.|++++|++.|++..+.. +.+..++..+..++...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR-H-RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4677788888887776 3 55667778888888888888888888888877653 4557777777778888888888888
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHc
Q 009011 254 VFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCRE---KDFRKVDDTLKEMQEK 330 (546)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~a~~l~~~m~~~ 330 (546)
.+++..+..|.+...+..+...|.+.|++++|.+.+++..+.... +...+..+...+... |++++|.+.+++..+.
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 887777666777777888888888888888888888887766432 566777777777777 7788888888777766
Q ss_pred C
Q 009011 331 G 331 (546)
Q Consensus 331 g 331 (546)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.76 E-value=1e-07 Score=89.77 Aligned_cols=159 Identities=10% Similarity=0.027 Sum_probs=73.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCC--HHHHHHHH
Q 009011 309 EHYCREKDFRKVDDTLKEMQEK----GCKP-SVITYTIVMHALGKAKQINEALKVYEKMKSDD---CLPD--TSFYSSLI 378 (546)
Q Consensus 309 ~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~--~~~~~~li 378 (546)
..|...|++++|...+.+..+. +..+ -..+|..+...|.+.|++++|...|++..+.. -.+. ..++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566666666666555432 1000 12345555555556666666666665544321 0111 23444555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHH
Q 009011 379 FILSKAGRVKDANEIFEDMKKQGVVP-N----VLTYNTMISSACARSEEENALKLLQKMEED----LCKPD-CETYAPLL 448 (546)
Q Consensus 379 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~ll 448 (546)
..|.. |++++|...|++..+..... + ..+++.+...+...|++++|+..|++..+. +..+. ..++..+.
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 55555 55666655555544311000 0 234444555555555555555555555432 11010 11333333
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 009011 449 KMCCRKKRMKVLNFLLTHMF 468 (546)
Q Consensus 449 ~~~~~~g~~~~a~~~~~~m~ 468 (546)
.++...|++++|...+++..
T Consensus 203 ~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 44444455555555555554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.5e-07 Score=87.16 Aligned_cols=223 Identities=10% Similarity=0.080 Sum_probs=154.7
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009011 210 GGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVK-GNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKA 288 (546)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 288 (546)
.|++++|.+++++..+.. +. .+.+ .++++.|...|... ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~----------~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KT----------SFMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CC----------CSSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-cc----------cccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 467888888888776531 11 0222 57777777776554 5678889999999999
Q ss_pred HHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 009011 289 MKEMFQQ----GFSP-DVVSYTCFIEHYCREKDFRKVDDTLKEMQEK----GCKP-SVITYTIVMHALGKAKQINEALKV 358 (546)
Q Consensus 289 ~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~ 358 (546)
|.+..+. |-.. -..+|+.+...|.+.|++++|...+++..+. |-.. -..++..+...|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 9987653 1111 1457888889999999999999999987754 2111 13567778888888 999999999
Q ss_pred HHHHHhCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 009011 359 YEKMKSDDC---LP--DTSFYSSLIFILSKAGRVKDANEIFEDMKKQ----GVVPN-VLTYNTMISSACARSEEENALKL 428 (546)
Q Consensus 359 ~~~~~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 428 (546)
|++..+... .+ ...++..+...|.+.|++++|...|++..+. +..+. ...+..+..++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 998875421 11 1467888899999999999999999988753 21111 22566667777888999999999
Q ss_pred HHHHHHCCCCCCH------HHHHHHHHHHHhcCChHHHHH
Q 009011 429 LQKMEEDLCKPDC------ETYAPLLKMCCRKKRMKVLNF 462 (546)
Q Consensus 429 ~~~m~~~~~~p~~------~~~~~ll~~~~~~g~~~~a~~ 462 (546)
|++.. . .|+. .....++.++ ..|+.+.+..
T Consensus 218 ~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99988 4 3321 1233444444 4566555444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.76 E-value=3e-05 Score=77.77 Aligned_cols=344 Identities=8% Similarity=-0.005 Sum_probs=188.4
Q ss_pred ChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCC-hHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHH----hcCCh
Q 009011 140 DLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKK-FCLMWELVKEMDELN-NGYVSLATMSTIMRRLV----RGGRY 213 (546)
Q Consensus 140 ~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~-~~~a~~l~~~m~~~~-~~~~~~~~~~~li~~~~----~~g~~ 213 (546)
..+.+..+|..+.. ..|+...|..-+....+.+. .+.+..+|+.....- ..+.+...|...+..+. .+|+.
T Consensus 29 ~~e~~~~iferal~---~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 29 DYRSLESLFGRCLK---KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp CHHHHHHHHHHHST---TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 34445555555542 23466666555555555442 234455555554431 12345555555554432 23455
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHH-------------ccCCHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHhc
Q 009011 214 DDAVEAFRGMKKYGVEKDTRALSVLMDTLV-------------KGNSVEHAYKVFLEFKDCIP-LSSQIFNILIHGWCKT 279 (546)
Q Consensus 214 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~-------------~~g~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 279 (546)
+.+..+|++........-...|......-. ..+.+..|..+++.+....+ .+...|...+..-...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 566666666654211111111111111000 00122233333433322111 2344565555543322
Q ss_pred C--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 009011 280 R--K-----VDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQI 352 (546)
Q Consensus 280 g--~-----~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 352 (546)
+ - .+.+..+|+++....+ -+...|...+..+.+.|+.++|..++++.... +.+...+. .|+...+.
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~ 258 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDE 258 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTC
T ss_pred CccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcch
Confidence 1 1 3446678888777543 35677777777788888888998888888877 33332222 22222111
Q ss_pred HHHHHHHHHHHhCC---------C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-c
Q 009011 353 NEALKVYEKMKSDD---------C---LPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACA-R 419 (546)
Q Consensus 353 ~~a~~~~~~~~~~~---------~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~ 419 (546)
++. ++.+.+.- . .....+|...+..+.+.+.++.|..+|+.. +. ...+...|......-.. .
T Consensus 259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHC
Confidence 221 22222110 0 012345666777777788899999999998 32 12344445432222222 3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 009011 420 SEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFF 499 (546)
Q Consensus 420 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 499 (546)
++.+.|..+|+...+.- +-+...+...+....+.|+.+.|..+|+.+. .....|...+..-...|+.+.+..++
T Consensus 334 ~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~ 407 (493)
T 2uy1_A 334 GSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELV 407 (493)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46999999999988753 2234556667777788899999999999973 25788888888888889999999988
Q ss_pred HHHHH
Q 009011 500 EEMIS 504 (546)
Q Consensus 500 ~~m~~ 504 (546)
+++.+
T Consensus 408 ~~~~~ 412 (493)
T 2uy1_A 408 DQKMD 412 (493)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88774
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=7e-06 Score=77.08 Aligned_cols=150 Identities=8% Similarity=-0.054 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGG-RYDDAVEAFRGMKKYGVEKDTRALSVLMD 240 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 240 (546)
.+++.+-..+.+.+..++|+++++.+.. . .+.+..+|+.--..+...| .+++++++++.+.... +.+..+++.-.-
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~-~-nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~w 131 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVR-M-NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLL 131 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH-h-CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3455555555566666788888888877 3 5666777777766666677 4777777777777654 555666665555
Q ss_pred HHHcc-C-CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009011 241 TLVKG-N-SVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVD--------DAQKAMKEMFQQGFSPDVVSYTCFIEH 310 (546)
Q Consensus 241 ~~~~~-g-~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~~~~~~~~~li~~ 310 (546)
++... + +.+++.++++.+.+..|.+..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.....
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~l 210 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYL 210 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 55554 4 6667777777776666666666666555555444444 555555555554333 44455544444
Q ss_pred HHhcC
Q 009011 311 YCREK 315 (546)
Q Consensus 311 ~~~~g 315 (546)
+.+.+
T Consensus 211 L~~l~ 215 (349)
T 3q7a_A 211 RVSRP 215 (349)
T ss_dssp HTTST
T ss_pred HHhcc
Confidence 44443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.4e-05 Score=75.16 Aligned_cols=166 Identities=8% Similarity=-0.062 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-C-ChHHHHH
Q 009011 142 TPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSK-KFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRG-G-RYDDAVE 218 (546)
Q Consensus 142 ~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~ 218 (546)
..|+..+..+... .+-+..+|+..-.++...| .+++++++++.+.. . .+.+..+|+.-...+.+. + +++++++
T Consensus 71 e~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~-~-nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 71 ERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV-Q-NLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-T-TCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred HHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3455555554421 1223334555555555555 35555555555554 3 445555555544444444 4 5555555
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHccCCHH--------HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC-------HH
Q 009011 219 AFRGMKKYGVEKDTRALSVLMDTLVKGNSVE--------HAYKVFLEFKDCIPLSSQIFNILIHGWCKTRK-------VD 283 (546)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~ 283 (546)
+++++.+.. +.+..+++.-.-++.+.|..+ ++.+.++++.+..+.|...|+.....+.+.+. ++
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHH
Confidence 555555432 344444443333333333333 45555555554455555555555555555443 34
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009011 284 DAQKAMKEMFQQGFSPDVVSYTCFIEHYCR 313 (546)
Q Consensus 284 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 313 (546)
++++.++++....+. |...|+.+-..+.+
T Consensus 226 eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~ 254 (349)
T 3q7a_A 226 DELIYILKSIHLIPH-NVSAWNYLRGFLKH 254 (349)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 444444444443332 44444444333333
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.6e-06 Score=77.19 Aligned_cols=127 Identities=6% Similarity=0.053 Sum_probs=59.9
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHhhhCCC---CCC--HH
Q 009011 165 NTMVDVLGKSKKFCLMWELVKEMDELNNGYVSL------ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGV---EKD--TR 233 (546)
Q Consensus 165 ~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~--~~ 233 (546)
...+..+...|++++|.+.+++..+.. +... ..+..+...+...|++++|++.|++..+... .+. ..
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccc--cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344555666666666666666555522 1111 1223334444555566666666655543211 111 23
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhh---cCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 234 ALSVLMDTLVKGNSVEHAYKVFLEFK---DCIPLS----SQIFNILIHGWCKTRKVDDAQKAMKEMF 293 (546)
Q Consensus 234 ~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 293 (546)
+++.+...|...|++++|...+++.. ...+.+ ..+++.+...|.+.|++++|...+++..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 44555555555555555555554443 112211 1344455555555555555555555443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.67 E-value=8.1e-06 Score=76.07 Aligned_cols=161 Identities=8% Similarity=-0.028 Sum_probs=97.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 009011 343 MHALGKAKQINEALKVYEKMKSDDC-LPDT----SFYSSLIFILSKAGRVKDANEIFEDMKKQGVV-PN----VLTYNTM 412 (546)
Q Consensus 343 i~~~~~~g~~~~a~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l 412 (546)
+..+...|++++|..++++..+... .++. ..+..+...+...|++++|...+++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 5556677777777777777665421 1221 12334555556666777777777777653211 12 2356777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCC-HHHHHH
Q 009011 413 ISSACARSEEENALKLLQKMEED-----LCKPD-CETYAPLLKMCCRKKRMKVLNFLLTHMFK----NDVSMD-AGTYAS 481 (546)
Q Consensus 413 i~~~~~~g~~~~A~~~~~~m~~~-----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~~~-~~~~~~ 481 (546)
...|...|++++|..+++++.+. +..+. ..+|..+...|.+.|++++|...+++..+ .+..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 77777777777777777776631 11111 23566677777777777777777776654 221222 566777
Q ss_pred HHHHHHHcCC-hHHHHHHHHHHH
Q 009011 482 LVRGLIESGK-LELACSFFEEMI 503 (546)
Q Consensus 482 li~~~~~~g~-~~~A~~~~~~m~ 503 (546)
+..++.+.|+ +++|.+.+++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 7777777774 577777777665
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=4.8e-06 Score=77.61 Aligned_cols=91 Identities=9% Similarity=0.099 Sum_probs=40.1
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-CC----HHHHHHH
Q 009011 168 VDVLGKSKKFCLMWELVKEMDELNNGYVSL----ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVE-KD----TRALSVL 238 (546)
Q Consensus 168 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~l 238 (546)
+..+...|++++|.+.+++........++. ..+..+...+...|++++|++.|++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 445555566666666666555422111111 12223344444445555555555555442111 11 1234444
Q ss_pred HHHHHccCCHHHHHHHHHHh
Q 009011 239 MDTLVKGNSVEHAYKVFLEF 258 (546)
Q Consensus 239 l~~~~~~g~~~~a~~~~~~~ 258 (546)
..+|...|++++|...|++.
T Consensus 162 g~~y~~~g~~~~A~~~~~~a 181 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQI 181 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 44444555555555444443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.5e-06 Score=75.20 Aligned_cols=129 Identities=12% Similarity=0.050 Sum_probs=92.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 338 TYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSAC 417 (546)
Q Consensus 338 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 417 (546)
.+..+...+...|++++|...|++.. .|+..++..+...|.+.|++++|.+.+++..+.. +.+...|..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556667777888888888887663 4567777788888888888888888888777643 235667777777888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009011 418 ARSEEENALKLLQKMEEDLCKPDC----------------ETYAPLLKMCCRKKRMKVLNFLLTHMFKNDV 472 (546)
Q Consensus 418 ~~g~~~~A~~~~~~m~~~~~~p~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 472 (546)
..|++++|.+.+++..+.. +.+. ..+..+..++...|++++|...++...+...
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 8888888888888877653 1122 5566667777777777777777777776543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.62 E-value=2e-06 Score=75.79 Aligned_cols=127 Identities=14% Similarity=0.057 Sum_probs=86.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 009011 200 MSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKT 279 (546)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 279 (546)
+..+...+...|++++|++.|++.. .|+..++..+..++...|++++|.+.+++.....|.+...+..+...|...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 3344556667777777777777653 456667777777777777777777777776665566677777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009011 280 RKVDDAQKAMKEMFQQGFS--------------P-DVVSYTCFIEHYCREKDFRKVDDTLKEMQEK 330 (546)
Q Consensus 280 g~~~~a~~~~~~m~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 330 (546)
|++++|...|++..+.... | ....+..+..+|.+.|++++|...++...+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 7777777777777664321 1 1255666667777777777777777776655
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.6e-06 Score=72.90 Aligned_cols=127 Identities=7% Similarity=-0.033 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 009011 199 TMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCK 278 (546)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 278 (546)
.+..+...+...|++++|+..|++..+.. +.+..++..+..++...|++++|.+.+++.....|.+...+..+...+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444555555566666666665554432 33455555555555555555555555555554445555555566666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCChhHHHHHHHHH
Q 009011 279 TRKVDDAQKAMKEMFQQGFSPDVVSYTC--FIEHYCREKDFRKVDDTLKEM 327 (546)
Q Consensus 279 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~--li~~~~~~g~~~~a~~l~~~m 327 (546)
.|++++|...+++..+.... +...+.. +...+.+.|++++|.+.+...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66666666666665554322 2223322 222244455555555555443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.6e-06 Score=72.78 Aligned_cols=130 Identities=11% Similarity=-0.012 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDT 241 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 241 (546)
..+..+...+...|++++|.+.|++..+. .+.+..++..+...+...|++++|++.|++..+.. +.+..++..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 45677888999999999999999999883 56678999999999999999999999999998764 5678889999999
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHH
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILI--HGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~a~~~~~~m~~ 294 (546)
+...|++++|.+.+++.....|.+...+..+. ..+.+.|++++|...+.....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999998877777777774444 447788999999999887653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2e-06 Score=68.01 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDT 241 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 241 (546)
..+..+...+...|++++|.+.|+++.+. .+.+..++..+...+.+.|++++|+..|+++.+.. +.+..++..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 34445555555555555555555555542 23344455555555555555555555555554432 2334444444444
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIH 274 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~ 274 (546)
+...|++++|...++++....|.+...+..+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 119 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 119 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 445555555555554444433334444433333
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.57 E-value=2.8e-07 Score=85.48 Aligned_cols=99 Identities=13% Similarity=0.032 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++.....|.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34556666677777777777777777776542 34666677777777777777777777777766666677777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 009011 276 WCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~ 295 (546)
|...|++++|...|++..+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777776553
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-06 Score=69.88 Aligned_cols=94 Identities=14% Similarity=0.029 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhc
Q 009011 200 MSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKT 279 (546)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 279 (546)
+......|.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|.+.+++..+..|.+...|..+..++...
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3333444444444444444444443322 233344444444444444444444444444333334444444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 009011 280 RKVDDAQKAMKEMFQ 294 (546)
Q Consensus 280 g~~~~a~~~~~~m~~ 294 (546)
|++++|.+.|++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.56 E-value=2.9e-06 Score=67.02 Aligned_cols=98 Identities=14% Similarity=0.209 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 009011 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGW 276 (546)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 276 (546)
...+..+...+...|++++|++.|+++.+.. +.+..++..+..++...|++++|...++++....|.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 4455666666666677777777766665542 344555556666666666666666666665554455555566666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 009011 277 CKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~ 295 (546)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 6666666666666665554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.8e-06 Score=68.98 Aligned_cols=111 Identities=9% Similarity=-0.041 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDT 241 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 241 (546)
..+..+...|.+.|++++|++.|++..+ . .+.+..+|..+...|.+.|++++|++.|++..+.. +.+...|..+..+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVK-R-DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 4567788899999999999999999988 3 67789999999999999999999999999998764 6678899999999
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
+...|++++|.+.|++..+..|.+..++..|..+
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999988778888777766543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-06 Score=72.72 Aligned_cols=123 Identities=9% Similarity=-0.008 Sum_probs=84.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTL 242 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 242 (546)
+++.+.+++...+.+..+.+ - .+.+...+..+...+.+.|++++|++.|++..+.. +.+...|..+..++
T Consensus 11 ~~~~l~~~~~~~~~l~~al~--------l-~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~ 80 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINA--------I-PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIY 80 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCC--------S-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHhC--------C-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34555555555554443321 1 33445666777777777788888888887777653 55667777777777
Q ss_pred HccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 243 VKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 243 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
...|++++|...|++.....|.+...|..+..+|.+.|++++|...|++..+.
T Consensus 81 ~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 81 QIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777666677777777777777777777777777777765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=2e-06 Score=69.11 Aligned_cols=99 Identities=13% Similarity=0.046 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
+...+..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.+.+++.....|.+...+..+...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34445555555555555555555555554432 23444445555555555555555555555444444455555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 009011 276 WCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~ 295 (546)
+.+.|++++|...|++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 55555555555555555443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.7e-06 Score=69.41 Aligned_cols=122 Identities=7% Similarity=-0.106 Sum_probs=104.6
Q ss_pred CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHH
Q 009011 157 YMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALS 236 (546)
Q Consensus 157 ~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 236 (546)
...+...+..+...+.+.|++++|.+.|++..+ . .+.+...+..+...+...|++++|++.|++..+.. +.+...+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 88 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIK-R-NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYT 88 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT-T-CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-c-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHH
Confidence 345667888999999999999999999999987 3 56678999999999999999999999999998754 55788899
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 009011 237 VLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRK 281 (546)
Q Consensus 237 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 281 (546)
.+..++...|++++|.+.+++.....|.+...+..+...+.+.|+
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999877666677778888777776553
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=3.6e-06 Score=67.18 Aligned_cols=118 Identities=8% Similarity=-0.033 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 009011 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGW 276 (546)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 276 (546)
...+..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|.+.++......|.+...+..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3344444555555555555555555554432 233444444455555555555555555544443444455555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009011 277 CKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKD 316 (546)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 316 (546)
...|++++|...+++..+.... +...+..+...+.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 5555555555555555444221 33444444444444443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.8e-05 Score=73.68 Aligned_cols=164 Identities=10% Similarity=0.015 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHhhcCC----CCC-
Q 009011 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDT------RALSVLMDTLVKGNSVEHAYKVFLEFKDCI----PLS- 265 (546)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~- 265 (546)
...+...+..+...|++++|++.+++..+... ... ..+..+...+...|++++|...+++..... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhcccc-CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 34455567788889999999999988776432 222 112334444555666666666665554311 111
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCC
Q 009011 266 -SQIFNILIHGWCKTRKVDDAQKAMKEMFQ---Q-GFSP--DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKG----CKP 334 (546)
Q Consensus 266 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~-g~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g----~~p 334 (546)
..+++.+...|...|++++|...+++..+ . +..+ ...++..+...|.+.|++++|...+++..+.. ...
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 33556666666666666666666665542 1 1001 11344555555555555555555555544321 000
Q ss_pred -CHHHHHHHHHHHHhcCCHHHH-HHHHHH
Q 009011 335 -SVITYTIVMHALGKAKQINEA-LKVYEK 361 (546)
Q Consensus 335 -~~~~~~~li~~~~~~g~~~~a-~~~~~~ 361 (546)
-..+|..+..+|.+.|++++| ...+++
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 023444444445555555554 333433
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.51 E-value=6.8e-06 Score=74.60 Aligned_cols=187 Identities=7% Similarity=-0.071 Sum_probs=90.6
Q ss_pred cCCChHHHHHHHHHHHhhCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHhhhCCCCCC--------------
Q 009011 173 KSKKFCLMWELVKEMDELNNGYVSLATMSTI-------MRRLVRGGRYDDAVEAFRGMKKYGVEKD-------------- 231 (546)
Q Consensus 173 ~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~~~~-------------- 231 (546)
..++...|.+.|.++.+ - .+.....|..+ ...+.+.++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~-~-dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITN-Y-DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHH-h-ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence 46788888888888887 3 56667777766 4555555555555555544432 1111
Q ss_pred --------HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--H
Q 009011 232 --------TRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPD--V 301 (546)
Q Consensus 232 --------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~ 301 (546)
......+...+...|++++|.++|..+....|.+. ....+...+.+.+++++|+..|+...... .|. .
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 11122333445555555555555555544333333 44444445555555555555554332221 000 1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009011 302 VSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPS--VITYTIVMHALGKAKQINEALKVYEKMKSD 365 (546)
Q Consensus 302 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 365 (546)
..+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2334444445555555555555554443222122 112333334444455555555555555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=2.4e-06 Score=68.22 Aligned_cols=120 Identities=15% Similarity=0.009 Sum_probs=104.3
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLM 239 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 239 (546)
+...+..+...+...|+++.|.+.|++.... .+.+...+..+...+...|++++|++.+++..+.. +.+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 3456778889999999999999999999873 55678899999999999999999999999998754 55688889999
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCH
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKV 282 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 282 (546)
.++...|++++|.+.+++.....|.+...+..+...+.+.|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999998877778888899998888887764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.47 E-value=3.6e-06 Score=69.49 Aligned_cols=96 Identities=11% Similarity=-0.046 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009011 408 TYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLI 487 (546)
Q Consensus 408 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 487 (546)
.+..+...+.+.|++++|...|+++.+.. +-+...|..+..+|...|++++|...|+++.+..+. +...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 44555555666666666666666666553 334556666666666666666666666666665444 4556666666666
Q ss_pred HcCChHHHHHHHHHHHHC
Q 009011 488 ESGKLELACSFFEEMISK 505 (546)
Q Consensus 488 ~~g~~~~A~~~~~~m~~~ 505 (546)
..|++++|...|++.++.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777766654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.2e-06 Score=73.66 Aligned_cols=97 Identities=15% Similarity=0.045 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC--
Q 009011 266 SQIFNILIHGWCKTRKVDDAQKAMKEMFQQ----GFSP-DVVSYTCFIEHYCREKDFRKVDDTLKEMQEK----GCKP-- 334 (546)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----g~~p-- 334 (546)
..++..+...+...|++++|...+++.... +..+ ...++..+...|...|++++|...+++..+. +..+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 344444555555555555555555444331 1111 1233444444455555555555555443322 1010
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 335 SVITYTIVMHALGKAKQINEALKVYEKM 362 (546)
Q Consensus 335 ~~~~~~~li~~~~~~g~~~~a~~~~~~~ 362 (546)
....+..+...+...|++++|...+++.
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 1123344444444555555555554444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.6e-06 Score=75.64 Aligned_cols=97 Identities=8% Similarity=-0.041 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----
Q 009011 267 QIFNILIHGWCKTRKVDDAQKAMKEMFQQ----GFSP--DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGC-KPS---- 335 (546)
Q Consensus 267 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~---- 335 (546)
.++..+...+...|++++|...+++..+. +-.+ ....+..+...+...|++++|...+++...... ..+
T Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 146 (203)
T 3gw4_A 67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI 146 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence 34555566666666666666666654432 1111 133455566666677777777777666553210 001
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 336 VITYTIVMHALGKAKQINEALKVYEKMK 363 (546)
Q Consensus 336 ~~~~~~li~~~~~~g~~~~a~~~~~~~~ 363 (546)
..++..+...+...|++++|.+.+++..
T Consensus 147 ~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 147 ACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 1234555566666677777666666544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.45 E-value=9.4e-07 Score=75.47 Aligned_cols=122 Identities=5% Similarity=0.005 Sum_probs=86.6
Q ss_pred HcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HHccCCH--
Q 009011 172 GKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDT-LVKGNSV-- 248 (546)
Q Consensus 172 ~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~g~~-- 248 (546)
...|++++|.+.++...+ . .+.+...+..+...|...|++++|+..|++..+.. +.+...+..+..+ +...|+.
T Consensus 21 ~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR-A-NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHH-H-CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 356777778888877766 2 45667778888888888888888888888876643 4456666666666 6677777
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009011 249 EHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQG 296 (546)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 296 (546)
++|...+++.....|.+...+..+...|...|++++|...|++..+..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 888888877776666677777777788888888888888888777663
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00031 Score=65.58 Aligned_cols=187 Identities=7% Similarity=0.002 Sum_probs=103.2
Q ss_pred hcCChH-HHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 009011 209 RGGRYD-DAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNS----------VEHAYKVFLEFKDCIPLSSQIFNILIHGWC 277 (546)
Q Consensus 209 ~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 277 (546)
+.|.++ +|+++++.+...+ +.+..+++.--.++...+. ++++..+++.+....|.+..+|+.-.-.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 334433 5666666666542 2233333332222222221 456666666666666667777776666666
Q ss_pred hcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----
Q 009011 278 KTR--KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKD-FRKVDDTLKEMQEKGCKPSVITYTIVMHALGKA----- 349 (546)
Q Consensus 278 ~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~----- 349 (546)
+.| .+++++.+++.+.+..+. +..+|+.-.-.+...|. ++++++.++.+.+.... |...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccc
Confidence 666 367777777777766544 66666666555666666 46777777777766433 555555554444433
Q ss_pred ---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHH
Q 009011 350 ---------KQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKA-----------GRVKDANEIFEDMKK 399 (546)
Q Consensus 350 ---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~ 399 (546)
+.++++++.+....... +-|..+|+.+-..+.+. +.++++.+.++++.+
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 33556666666666543 33556665444444433 234555555555554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.41 E-value=9.6e-07 Score=81.82 Aligned_cols=98 Identities=8% Similarity=-0.050 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLM 239 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 239 (546)
+...+..+...+.+.|++++|.+.|++..+. .+.+...|..+...|.+.|++++|++.+++..+.. +.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4567788899999999999999999999883 56688999999999999999999999999998764 56788899999
Q ss_pred HHHHccCCHHHHHHHHHHhhc
Q 009011 240 DTLVKGNSVEHAYKVFLEFKD 260 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~ 260 (546)
.++...|++++|...|++...
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999988754
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.4e-06 Score=71.84 Aligned_cols=100 Identities=11% Similarity=0.014 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 009011 195 VSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIH 274 (546)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~ 274 (546)
.+...+..+...+.+.|++++|+..|++..... +.+...+..+..++...|++++|.+.|++.....|.+...+..+..
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 344555556666666666666666666665543 4455556666666666666666666666665555556666666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 009011 275 GWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~~~ 295 (546)
+|...|++++|...|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666665543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.9e-06 Score=76.98 Aligned_cols=129 Identities=12% Similarity=-0.022 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 009011 269 FNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPS--VITYTIVMHAL 346 (546)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~~~~~li~~~ 346 (546)
+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 3444555555666666666665555432 222233333445555555555555555332211 010 12344445555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 347 GKAKQINEALKVYEKMKSDDCLPD--TSFYSSLIFILSKAGRVKDANEIFEDMKKQ 400 (546)
Q Consensus 347 ~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 400 (546)
...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 555555555555555543221122 223334444455555555555555555543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.8e-06 Score=73.65 Aligned_cols=120 Identities=3% Similarity=0.106 Sum_probs=66.3
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 009011 209 RGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG-WCKTRKV--DDA 285 (546)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~a 285 (546)
..|++++|++.|++..+.. +.+...+..+..++...|++++|...|++.....|.+...+..+... +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 3455666666666655432 34555566666666666666666666666555445555555555555 5555665 666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009011 286 QKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEK 330 (546)
Q Consensus 286 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 330 (546)
...+++....... +...+..+...|...|++++|...++...+.
T Consensus 101 ~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 6666665554322 3455555555566666666666666665554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.37 E-value=7.2e-06 Score=78.05 Aligned_cols=120 Identities=14% Similarity=0.035 Sum_probs=56.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVS---------------LATMSTIMRRLVRGGRYDDAVEAFRGMKKYG 227 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 227 (546)
.|..+...|.+.|++++|...|++..+.. +.+ ..+|..+...|.+.|++++|++.|++..+..
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34445555555555555555555555422 111 2444444444445555555555554444432
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 228 VEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDA 285 (546)
Q Consensus 228 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 285 (546)
+.+..++..+..++...|++++|...|++.....|.+..++..+..++.+.|+.++|
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 233444444444444444444444444444443444444444444444444444444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.6e-05 Score=61.88 Aligned_cols=104 Identities=13% Similarity=-0.062 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTL 242 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 242 (546)
.+..+...+...|++++|.+.|+..... .+.+...+..+...+...|++++|+..+++..+.. +.+...+..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3444555555555555555555555542 33344555555555555555555555555554432 23344444444455
Q ss_pred HccCCHHHHHHHHHHhhcCCCCCHHHH
Q 009011 243 VKGNSVEHAYKVFLEFKDCIPLSSQIF 269 (546)
Q Consensus 243 ~~~g~~~~a~~~~~~~~~~~~~~~~~~ 269 (546)
...|++++|.+.+++.....|.+...+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~ 109 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLK 109 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHH
Confidence 555555555555554444334343333
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00045 Score=64.50 Aligned_cols=184 Identities=8% Similarity=0.002 Sum_probs=123.9
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--
Q 009011 248 VEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRK----------VDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK-- 315 (546)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-- 315 (546)
-++|..++..+....|.+..+|+.--..+...|. +++++.+++.+....++ +..+|+.-.-.+.+.|
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcc
Confidence 3478888888888788888888776555554443 57788888888776554 6777777666666767
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------
Q 009011 316 DFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQ-INEALKVYEKMKSDDCLPDTSFYSSLIFILSKA---------- 384 (546)
Q Consensus 316 ~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---------- 384 (546)
.+++++.+++.+.+.... |...|+.-...+...|. ++++++.++++.+.+ +-|..+|+.....+.+.
T Consensus 125 ~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 125 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------
T ss_pred cHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcccccccc
Confidence 478888888888877544 67777776667777777 578888888888765 34777777666655554
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHC
Q 009011 385 ----GRVKDANEIFEDMKKQGVVPNVLTYNTMISSACAR-----------SEEENALKLLQKMEED 435 (546)
Q Consensus 385 ----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~ 435 (546)
+.++++++.+.......+. |...|+.+--.+.+. +..+++++.++++.+.
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 3466777777776654432 566666544444433 2345566666666554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.36 E-value=8.8e-06 Score=77.45 Aligned_cols=150 Identities=11% Similarity=-0.011 Sum_probs=99.0
Q ss_pred CChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC---------------HHHHHHHH
Q 009011 175 KKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKD---------------TRALSVLM 239 (546)
Q Consensus 175 ~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---------------~~~~~~ll 239 (546)
+++++|.+.|+.... . .+.....+..+...+.+.|++++|++.|++..+.. +.+ ..++..+.
T Consensus 127 ~~~~~A~~~~~~a~~-~-~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 127 KSFEKAKESWEMNSE-E-KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEECCCCGGGCCHH-H-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHH-H-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHH
Confidence 444555555443332 1 22346778888899999999999999999987753 222 46666677
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRK 319 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 319 (546)
.++.+.|++++|...+++.....|.+...|..+..+|...|++++|...|++..+..+. +...+..+..++.+.|+.++
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766656666777777777777777777777777776665332 45566666666666666666
Q ss_pred H-HHHHHHHH
Q 009011 320 V-DDTLKEMQ 328 (546)
Q Consensus 320 a-~~l~~~m~ 328 (546)
+ ...+..|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6 33444443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=7.6e-07 Score=77.69 Aligned_cols=121 Identities=7% Similarity=-0.030 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCH----------------HHHHHHHHHHHccCCHHHHHHHHHHhhc
Q 009011 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDT----------------RALSVLMDTLVKGNSVEHAYKVFLEFKD 260 (546)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 260 (546)
...+..+...+.+.|++++|++.|++..+.. +.+. .++..+..++...|++++|...++....
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4456666677777778888888777776532 1111 4445555555555555555555555554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009011 261 CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRK 319 (546)
Q Consensus 261 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 319 (546)
..|.+...+..+..+|...|++++|...|++..+.... +...+..+..++...++.++
T Consensus 117 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 117 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC
T ss_pred hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555544221 33444444444444443333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-05 Score=64.12 Aligned_cols=95 Identities=15% Similarity=0.056 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Q 009011 199 TMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCK 278 (546)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 278 (546)
.+..+...+.+.|++++|++.|++..+.. +.+...+..+..++.+.|++++|...+++.....|.+...|..+..++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34444555555555555555555554432 33445555555555555555555555555554445555555555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 009011 279 TRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 279 ~g~~~~a~~~~~~m~~ 294 (546)
.|++++|...|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555555555544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=2.5e-06 Score=70.37 Aligned_cols=95 Identities=16% Similarity=-0.033 Sum_probs=44.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009011 234 ALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR 313 (546)
Q Consensus 234 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 313 (546)
.+..+...+...|++++|...|+......|.+...|..+..+|...|++++|...|++.....+. +...+..+..+|..
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence 33444444445555555555555444444444444555555555555555555555554443221 33344444444444
Q ss_pred cCChhHHHHHHHHHHH
Q 009011 314 EKDFRKVDDTLKEMQE 329 (546)
Q Consensus 314 ~g~~~~a~~l~~~m~~ 329 (546)
.|++++|...|+...+
T Consensus 102 ~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 102 XGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4555555444444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=2.6e-05 Score=60.69 Aligned_cols=98 Identities=13% Similarity=0.127 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 009011 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGW 276 (546)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 276 (546)
...+..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|...+++.....|.+...+..+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3455556666677777777777777766542 345566666666666667777776666666555555666666666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 009011 277 CKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~ 295 (546)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 6666666666666666654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.3e-05 Score=63.80 Aligned_cols=112 Identities=9% Similarity=-0.064 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009011 161 PEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMD 240 (546)
Q Consensus 161 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 240 (546)
...|..+...+.+.|++++|.+.|++..+ . .+.+...|..+...+.+.|++++|++.|++..+.. +.+...+..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIK-R-APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH-h-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34677788899999999999999999988 3 56788999999999999999999999999998764 567888999999
Q ss_pred HHHccCCHHHHHHHHHHhhcCC------CCCHHHHHHHHHH
Q 009011 241 TLVKGNSVEHAYKVFLEFKDCI------PLSSQIFNILIHG 275 (546)
Q Consensus 241 ~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~li~~ 275 (546)
++...|++++|...|++..... |.+..+...+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 9999999999999998876644 4455555444433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.26 E-value=7.7e-06 Score=63.14 Aligned_cols=59 Identities=14% Similarity=0.075 Sum_probs=24.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 009011 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMK 224 (546)
Q Consensus 164 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (546)
+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|++.|++..
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 333444444444444444444444331 22233334444444444444444444444443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=1.3e-05 Score=69.69 Aligned_cols=132 Identities=13% Similarity=0.014 Sum_probs=102.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCC---C-----------HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYV---S-----------LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGV 228 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~---~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 228 (546)
.+..+...+.+.|++++|.+.|++..+..+..+ . ..++..+...+.+.|++++|+..+++..+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 346678888999999999999999987331111 1 2788899999999999999999999998764
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHC
Q 009011 229 EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQ-KAMKEMFQQ 295 (546)
Q Consensus 229 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~ 295 (546)
+.+...+..+..++...|++++|.+.|++.....|.+..++..+..++...++.+++. ..+..|...
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5678889999999999999999999999988877888999999999988888777766 555555543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.2e-05 Score=65.69 Aligned_cols=97 Identities=13% Similarity=0.028 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 009011 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGW 276 (546)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 276 (546)
...+..+...+.+.|++++|+..|++..... +.+...+..+..++...|++++|...|++.....|.+...+..+..+|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3344444555555555666655555555432 334555555555555555555555555555544455555555555556
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 009011 277 CKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~ 294 (546)
...|++++|...|+...+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666665555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.22 E-value=8.6e-06 Score=66.54 Aligned_cols=102 Identities=8% Similarity=-0.052 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009011 162 EMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDT 241 (546)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 241 (546)
..+..+...+.+.|++++|.+.|+.... . .+.+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCM-L-DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHH-h-CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 3456677888999999999999999988 3 67788999999999999999999999999998764 5677888889999
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCH
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSS 266 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~ 266 (546)
+...|++++|.+.|+......|.+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999988766434333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.1e-05 Score=60.62 Aligned_cols=102 Identities=10% Similarity=0.033 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCC--CHHHHHHH
Q 009011 195 VSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPL--SSQIFNIL 272 (546)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l 272 (546)
.+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+++.....|. +..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 345567778888999999999999999998764 567888899999999999999999999999887777 89999999
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHCCC
Q 009011 273 IHGWCKT-RKVDDAQKAMKEMFQQGF 297 (546)
Q Consensus 273 i~~~~~~-g~~~~a~~~~~~m~~~g~ 297 (546)
...+.+. |++++|.+.+++......
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 9999999 999999999999988754
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.19 E-value=3.5e-05 Score=62.15 Aligned_cols=99 Identities=13% Similarity=0.032 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 009011 195 VSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIH 274 (546)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~ 274 (546)
.+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++......|.+...+..+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 344555555555555555555555555554432 3344455555555555555555555555554444445555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 009011 275 GWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~~ 294 (546)
++...|++++|...|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555555543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.18 E-value=2.2e-05 Score=63.36 Aligned_cols=100 Identities=8% Similarity=-0.057 Sum_probs=89.0
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHH
Q 009011 158 MHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSV 237 (546)
Q Consensus 158 ~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 237 (546)
..+...|..+...+...|++++|...|+..... .+.+...+..+...+...|++++|+..|++..+.. +.+...+..
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 82 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFF 82 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHH
Confidence 356778899999999999999999999999883 56678999999999999999999999999998764 567888999
Q ss_pred HHHHHHccCCHHHHHHHHHHhhc
Q 009011 238 LMDTLVKGNSVEHAYKVFLEFKD 260 (546)
Q Consensus 238 ll~~~~~~g~~~~a~~~~~~~~~ 260 (546)
+..++...|++++|...|++...
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999988764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.2e-05 Score=64.87 Aligned_cols=99 Identities=11% Similarity=0.018 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 196 SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
+...+..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|...|++.....|.+...|..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34455555666666666666666666665542 33555566666666666666666666666555555566666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 009011 276 WCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~ 295 (546)
|...|++++|...|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 66666666666666666554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.17 E-value=6.7e-05 Score=61.19 Aligned_cols=96 Identities=10% Similarity=0.020 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHH
Q 009011 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKD----TRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNIL 272 (546)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 272 (546)
...+..+...+.+.|++++|++.|++..+. .|+ ...+..+..++...|++++|...+++.....|.+...+..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 334444444444444444444444444332 222 23333344444444444444444444333333344444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 009011 273 IHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 273 i~~~~~~g~~~~a~~~~~~m~~ 294 (546)
..++...|++++|...|++...
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444555555444444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.16 E-value=5.4e-05 Score=61.80 Aligned_cols=115 Identities=13% Similarity=-0.023 Sum_probs=95.5
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHH
Q 009011 158 MHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVS---LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRA 234 (546)
Q Consensus 158 ~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 234 (546)
..+...+..+...+...|++++|.+.|++..+. .+.+ ...+..+...+...|++++|++.+++..+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 346677888999999999999999999999873 3333 7888899999999999999999999987753 456888
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 235 LSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 235 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
+..+..++...|++++|.+.|++.....|.+..++..+...
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 88899999999999999999999887667777666655544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.16 E-value=1.9e-05 Score=62.83 Aligned_cols=94 Identities=7% Similarity=0.096 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC-------HHHHHHH
Q 009011 200 MSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLS-------SQIFNIL 272 (546)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l 272 (546)
+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++.....+.+ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3333444444444444444444443322 2233333344444444444444444443332211111 3344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 009011 273 IHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 273 i~~~~~~g~~~~a~~~~~~m~~ 294 (546)
...+...|++++|.+.|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 5555555555555555555444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.16 E-value=4.9e-05 Score=60.62 Aligned_cols=103 Identities=14% Similarity=0.076 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCC----HHHHHHH
Q 009011 409 YNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDV--SMD----AGTYASL 482 (546)
Q Consensus 409 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~~~----~~~~~~l 482 (546)
+..+...+.+.|++++|++.|++.++.. +-+...|..+..+|...|++++|...+++..+.++ .++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3344444555555555555555554432 22344444455555555555555555554443211 111 1345555
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 009011 483 VRGLIESGKLELACSFFEEMISKGIVPYHSTY 514 (546)
Q Consensus 483 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 514 (546)
..++...|++++|++.|++.++. .|++.+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 66666777777777777776643 3554443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.7e-05 Score=65.28 Aligned_cols=105 Identities=10% Similarity=-0.008 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLM 239 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 239 (546)
+...+..+...+.+.|++++|++.|++..+. .+.+...|..+...|.+.|++++|++.|++..+.. +.+...+..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4567788999999999999999999999883 56688999999999999999999999999998764 56688999999
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCHH
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSSQ 267 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 267 (546)
.++...|++++|.+.|++.....|.+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 9999999999999999988764444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.13 E-value=4e-05 Score=60.91 Aligned_cols=107 Identities=15% Similarity=0.116 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CC----HHHHHHH
Q 009011 409 YNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVS--MD----AGTYASL 482 (546)
Q Consensus 409 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~----~~~~~~l 482 (546)
|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+.... ++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4444444555555555555555554432 223444445555555555555555555555442211 11 4556666
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009011 483 VRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLE 518 (546)
Q Consensus 483 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 518 (546)
...+...|++++|.+.|+++.+.. |+......+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~ 119 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHH
Confidence 666777777777777777766543 4544444333
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.12 E-value=5.2e-05 Score=60.45 Aligned_cols=56 Identities=13% Similarity=0.105 Sum_probs=25.3
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 238 LMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMF 293 (546)
Q Consensus 238 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 293 (546)
+...+.+.|++++|.+.|++..+..|.+..+|+.+..+|.+.|++++|++.+++..
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444444444433334444444444444444444444444444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00016 Score=71.19 Aligned_cols=197 Identities=12% Similarity=0.054 Sum_probs=122.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCC
Q 009011 273 IHGWCKTRKVDDAQKAMKEMFQQGFSPD----------------VVSYTCFIEHYCREKDFRKVDDTLKEMQEKG-CKPS 335 (546)
Q Consensus 273 i~~~~~~g~~~~a~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~ 335 (546)
...+.+.|++++|.+.|..+.+...... ...+..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567788999999999998887643221 1235667788888888888888887766431 1112
Q ss_pred HH----HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC-
Q 009011 336 VI----TYTIVMHALGKAKQINEALKVYEKMKS----DDCLP-DTSFYSSLIFILSKAGRVKDANEIFEDMKKQ--GVV- 403 (546)
Q Consensus 336 ~~----~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~- 403 (546)
.. +.+.+-..+...|+.+++..++..... .+..+ -..++..+...|...|++++|..+++++... +..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 122222333456778888887776643 22222 2456677777888888888888888776542 111
Q ss_pred -C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009011 404 -P-NVLTYNTMISSACARSEEENALKLLQKMEED--LCK-P-D--CETYAPLLKMCCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 404 -p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~-p-~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 469 (546)
+ ....+..++..|...|++++|..++++.... .+. | . ...+..+...+...|+++.|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 1345667777788888888888887776532 111 1 1 23455555566677777777777766654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=2.6e-05 Score=61.59 Aligned_cols=87 Identities=11% Similarity=0.073 Sum_probs=37.7
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 206 RLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDA 285 (546)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 285 (546)
.+.+.|++++|+..|++..+.. +.+...+..+..++...|+.++|...|++.....|.+...+..+...+...|++++|
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A 104 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 104 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3344444444444444443322 223334444444444444444444444444433344444444444444444444444
Q ss_pred HHHHHHHH
Q 009011 286 QKAMKEMF 293 (546)
Q Consensus 286 ~~~~~~m~ 293 (546)
...+++..
T Consensus 105 ~~~~~~al 112 (121)
T 1hxi_A 105 LASLRAWL 112 (121)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00018 Score=70.83 Aligned_cols=197 Identities=11% Similarity=0.049 Sum_probs=138.0
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhCCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHhhhC-CCCCC
Q 009011 168 VDVLGKSKKFCLMWELVKEMDELNNGYVS---------------LATMSTIMRRLVRGGRYDDAVEAFRGMKKY-GVEKD 231 (546)
Q Consensus 168 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~ 231 (546)
...+.+.|++++|.+.|..+.+..+...+ ..++..+...|.+.|++++|.+.+..+.+. +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45677889999999999998874311111 235778899999999999999999987542 11222
Q ss_pred HH----HHHHHHHHHHccCCHHHHHHHHHHhhc------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--
Q 009011 232 TR----ALSVLMDTLVKGNSVEHAYKVFLEFKD------CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ--GF-- 297 (546)
Q Consensus 232 ~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~-- 297 (546)
.. +.+.+...+...|+.+.+.+++..... .......++..+...|...|++++|..++++.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 22 223333344567889999988876532 12333567888999999999999999999987653 11
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCC-C-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009011 298 SP-DVVSYTCFIEHYCREKDFRKVDDTLKEMQEK--GCK-P-S--VITYTIVMHALGKAKQINEALKVYEKMKS 364 (546)
Q Consensus 298 ~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~-p-~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 364 (546)
.+ ....+..++..|...|++++|..+++..... .+. | . ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2457888889999999999999999887643 121 1 1 23455666677788999999888777643
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.04 E-value=9.2e-05 Score=58.84 Aligned_cols=98 Identities=13% Similarity=-0.010 Sum_probs=52.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC---HHHHHHHH
Q 009011 166 TMVDVLGKSKKFCLMWELVKEMDELNNGYVSL---ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKD---TRALSVLM 239 (546)
Q Consensus 166 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ll 239 (546)
.+...+...|++++|.+.|+.+.+.. +.+. ..+..+...+.+.|++++|+..|++..+.. +.+ ..++..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 34455556666666666666665532 2222 455555566666666666666666655432 222 34455555
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCH
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSS 266 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 266 (546)
.++...|+.++|...|+.+....|.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence 555555555555555555554444333
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.01 E-value=4.7e-05 Score=63.04 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 009011 478 TYASLVRGLIESGKLELACSFFEEMI 503 (546)
Q Consensus 478 ~~~~li~~~~~~g~~~~A~~~~~~m~ 503 (546)
.+..+...+...|++++|.+.+++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34444555555555555555555544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=5e-05 Score=59.96 Aligned_cols=97 Identities=8% Similarity=-0.066 Sum_probs=83.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 009011 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLV 243 (546)
Q Consensus 164 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 243 (546)
+..+...+.+.|++++|...|+...+ . .+.+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~-~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ-K-EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-H-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-H-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45677888999999999999999998 3 67789999999999999999999999999998764 557888899999999
Q ss_pred ccCCHHHHHHHHHHhhcCCC
Q 009011 244 KGNSVEHAYKVFLEFKDCIP 263 (546)
Q Consensus 244 ~~g~~~~a~~~~~~~~~~~~ 263 (546)
..|+.++|...+++.....|
T Consensus 97 ~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHC---
T ss_pred HcCCHHHHHHHHHHHHHhCc
Confidence 99999999999998876444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00021 Score=56.69 Aligned_cols=93 Identities=18% Similarity=0.190 Sum_probs=58.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC---HHHHHHHHHH
Q 009011 202 TIMRRLVRGGRYDDAVEAFRGMKKYGVEKDT---RALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLS---SQIFNILIHG 275 (546)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~li~~ 275 (546)
.+...+.+.|++++|++.|++..+.. +.+. ..+..+..++...|++++|...|+.+....|.+ ..++..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34555667777777777777766532 2222 355556666666777777777776665544544 5556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 009011 276 WCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~ 295 (546)
+.+.|++++|...|+++...
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66677777777766666654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.97 E-value=4.4e-05 Score=76.33 Aligned_cols=121 Identities=9% Similarity=-0.039 Sum_probs=90.7
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccC
Q 009011 167 MVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGN 246 (546)
Q Consensus 167 ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 246 (546)
+...+.+.|++++|.+.|++..+ . .+.+..+|..+...|.+.|++++|++.|++..+.. +.+..++..+..++...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~-~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIE-L-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH-h-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 34456678888899988888887 3 55668888888888888889999988888888764 556778888888888888
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 009011 247 SVEHAYKVFLEFKDCIPLSSQIFNILIHG--WCKTRKVDDAQKAMK 290 (546)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 290 (546)
++++|.+.+++..+..|.+...+..+..+ +.+.|++++|.+.++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888888776556566666666665 777788888888877
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.93 E-value=2.5e-05 Score=78.12 Aligned_cols=120 Identities=8% Similarity=-0.016 Sum_probs=92.6
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 204 MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVD 283 (546)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 283 (546)
...+.+.|++++|++.|++..+.. +.+..++..+..++.+.|++++|.+.+++..+..|.+..++..+..+|.+.|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 345567889999999999987753 5568888889999999999999999999888877888889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHH
Q 009011 284 DAQKAMKEMFQQGFSPDVVSYTCFIEH--YCREKDFRKVDDTLK 325 (546)
Q Consensus 284 ~a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~a~~l~~ 325 (546)
+|.+.|++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999998876432 33445555444 778888999988887
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.92 E-value=4.7e-05 Score=63.07 Aligned_cols=25 Identities=8% Similarity=-0.035 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 269 FNILIHGWCKTRKVDDAQKAMKEMF 293 (546)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~ 293 (546)
+..+...+...|++++|...+++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444445555555555555554443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.90 E-value=2e-05 Score=61.77 Aligned_cols=86 Identities=10% Similarity=0.001 Sum_probs=50.3
Q ss_pred cCChHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009011 210 GGRYDDAVEAFRGMKKYG--VEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQK 287 (546)
Q Consensus 210 ~g~~~~A~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 287 (546)
.|++++|+..|++..+.+ -+.+..++..+..++...|++++|...|++.....|.+..++..+..++.+.|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 456666666666665542 122344555566666666666666666666665556666666666666666666666666
Q ss_pred HHHHHHHC
Q 009011 288 AMKEMFQQ 295 (546)
Q Consensus 288 ~~~~m~~~ 295 (546)
.+++....
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00014 Score=72.29 Aligned_cols=88 Identities=8% Similarity=-0.057 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 233 RALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYC 312 (546)
Q Consensus 233 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 312 (546)
.+|..+..++.+.|++++|...+++.....|.+...|..+..+|...|++++|...|++..+.... +...+..+..++.
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 444445555555555555555555554444445555555555555555555555555555544221 3334444555555
Q ss_pred hcCChhHHH
Q 009011 313 REKDFRKVD 321 (546)
Q Consensus 313 ~~g~~~~a~ 321 (546)
+.++.+++.
T Consensus 397 ~~~~~~~a~ 405 (457)
T 1kt0_A 397 KAKEHNERD 405 (457)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00015 Score=69.67 Aligned_cols=27 Identities=7% Similarity=0.305 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhh
Q 009011 199 TMSTIMRRLVRGGRYDDAVEAFRGMKK 225 (546)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (546)
.+..+...+.+.|++++|++.|++..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~ 251 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLR 251 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344556666667777777777766653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00015 Score=69.68 Aligned_cols=122 Identities=13% Similarity=0.058 Sum_probs=69.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhC--------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELN--------------NGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGV 228 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~--------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 228 (546)
.+..+...+.+.|++++|.+.|++..+.. ..+....+|..+...|.+.|++++|++.+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 46778889999999999999999887621 012233445555555555555555555555555432
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 229 EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDA 285 (546)
Q Consensus 229 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 285 (546)
+.+...+..+..++...|++++|.+.|++..+..|.+..++..+...+.+.++.+++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 234444555555555555555555555554444444444444444444444444433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00017 Score=71.78 Aligned_cols=89 Identities=15% Similarity=0.037 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009011 266 SQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHA 345 (546)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~ 345 (546)
..+|..+..+|.+.|++++|+..+++..+.... +...|..+..+|...|++++|...|++..+... -+...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 355677777777778888887777777766433 566777777777777888888777777776532 244566666677
Q ss_pred HHhcCCHHHHH
Q 009011 346 LGKAKQINEAL 356 (546)
Q Consensus 346 ~~~~g~~~~a~ 356 (546)
+.+.++.+++.
T Consensus 395 ~~~~~~~~~a~ 405 (457)
T 1kt0_A 395 QKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766655
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00054 Score=69.80 Aligned_cols=172 Identities=7% Similarity=-0.032 Sum_probs=103.3
Q ss_pred hHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC--
Q 009011 213 YDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNS----------VEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTR-- 280 (546)
Q Consensus 213 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 280 (546)
.++|++.++++.+.+ +.+..+|+.--.++...|+ ++++.+.++.+....|.+..+|+.-.-.+.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 345566666665543 3344445444444444444 666666666666666666677766666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----------
Q 009011 281 KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK-DFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKA---------- 349 (546)
Q Consensus 281 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~---------- 349 (546)
+++++.+.++++.+.... +..+|+.-...+.+.| .++++++.++++.+.... |...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccc
Confidence 557777777777666544 5666666666666666 666677666666665433 555565555554442
Q ss_pred ----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 350 ----KQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVK 388 (546)
Q Consensus 350 ----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 388 (546)
+.++++++.+.+..... +-|..+|+..-..+.+.++.+
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 34567777777776654 346666766666666665533
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.82 E-value=3.9e-05 Score=60.11 Aligned_cols=94 Identities=9% Similarity=-0.102 Sum_probs=66.2
Q ss_pred cCCChHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 009011 173 KSKKFCLMWELVKEMDELNN-GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHA 251 (546)
Q Consensus 173 ~~~~~~~a~~l~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 251 (546)
..|++++|+..|++..+.+. .+.+..++..+...|.+.|++++|++.|++..+.. +.+..++..+..++...|+.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 45778888888888876210 14456778888888888888888888888887754 55677778888888888888888
Q ss_pred HHHHHHhhcCCCCCHH
Q 009011 252 YKVFLEFKDCIPLSSQ 267 (546)
Q Consensus 252 ~~~~~~~~~~~~~~~~ 267 (546)
...+++.....|.+..
T Consensus 81 ~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 81 VELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHhCCCcHH
Confidence 8888877665455543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00032 Score=58.43 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 442 ETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 442 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
..|..+..+|.+.|++++|...++...+.++. +...|..+..+|...|++++|...|++..+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 45666677777777777777777777775544 6677777777777888888888888777754
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00012 Score=69.67 Aligned_cols=147 Identities=10% Similarity=-0.046 Sum_probs=65.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTL 242 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 242 (546)
.+..+...+.+.|++++|...|++..... ++... +...|+.+++...+. ...|..+..++
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 45667777788888888888888877632 22110 111222222222110 12455556666
Q ss_pred HccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhHHH
Q 009011 243 VKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEH-YCREKDFRKVD 321 (546)
Q Consensus 243 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~a~ 321 (546)
.+.|++++|...+++.....|.+...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+++.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665555556666666666666666666666666666544221 23333333333 22334555566
Q ss_pred HHHHHHHHc
Q 009011 322 DTLKEMQEK 330 (546)
Q Consensus 322 ~l~~~m~~~ 330 (546)
..|..|...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 666665543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0018 Score=65.91 Aligned_cols=175 Identities=7% Similarity=-0.016 Sum_probs=140.8
Q ss_pred CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009011 246 NSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRK----------VDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK 315 (546)
Q Consensus 246 g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 315 (546)
..-++|.+.++++....|.+..+|+.--..+.+.|+ ++++.+.++.+.+..++ +..+|+.-.-.+.+.|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 445678889998888888889999988888888877 89999999999987665 7888888888888888
Q ss_pred --ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------
Q 009011 316 --DFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAK-QINEALKVYEKMKSDDCLPDTSFYSSLIFILSKA-------- 384 (546)
Q Consensus 316 --~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 384 (546)
+++++++.++.+.+.... |...|+.-..++.+.| .++++++.++++.+.+ +-+..+|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 679999999999998655 7888888888888888 8999999999998876 44788888777776663
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009011 385 ------GRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEEN 424 (546)
Q Consensus 385 ------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 424 (546)
+.++++.+.+++....... |...|+.+-..+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 4578899999888875533 67788887777776666433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00033 Score=58.36 Aligned_cols=98 Identities=12% Similarity=0.135 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhC-------CC----------CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhc
Q 009011 198 ATMSTIMRRLVRGGRYDDAVEAFRGMKKY-------GV----------EKDTRALSVLMDTLVKGNSVEHAYKVFLEFKD 260 (546)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~----------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 260 (546)
..+......+.+.|++++|+..|.+..+. .- +.+...|..+..++.+.|++++|...++....
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34455556666666777776666665442 00 11223445555555555555555555555554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 261 CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 261 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
..|.+...|..+..+|...|++++|...|++....
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 44555555555555555566666665555555544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00015 Score=68.95 Aligned_cols=149 Identities=7% Similarity=-0.016 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 009011 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGW 276 (546)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 276 (546)
...+..+...+.+.|++++|+..|++..+. .|+... +...++.+++...+. ..+|+.+..+|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~---------~~~~~nla~~~ 240 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK---------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH---------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH---------HHHHHHHHHHH
Confidence 445666778888999999999999998754 343321 223333444333221 23788999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHH
Q 009011 277 CKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHA-LGKAKQINEA 355 (546)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~a 355 (546)
.+.|++++|...+++..+.... +...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887543 6788999999999999999999999998765321 34444444444 2345677888
Q ss_pred HHHHHHHHhC
Q 009011 356 LKVYEKMKSD 365 (546)
Q Consensus 356 ~~~~~~~~~~ 365 (546)
...|..|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8899888765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0021 Score=51.73 Aligned_cols=110 Identities=10% Similarity=-0.059 Sum_probs=50.5
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 009011 316 DFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSK----AGRVKDAN 391 (546)
Q Consensus 316 ~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 391 (546)
++++|.+.|++..+.|.. +.. +...|...+.+++|.++|++..+.| +...+..+..+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~~-~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM-FGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-THH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH-hhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 344455555554444411 211 3333444444444555555554443 33444444444444 44555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 009011 392 EIFEDMKKQGVVPNVLTYNTMISSACA----RSEEENALKLLQKMEEDL 436 (546)
Q Consensus 392 ~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 436 (546)
+.|++..+.| +...+..+...|.. .++.++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555554432 33444444444444 445555555555554443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.56 E-value=9.4e-05 Score=56.91 Aligned_cols=89 Identities=13% Similarity=0.008 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-------H
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKD-------T 232 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-------~ 232 (546)
+...+..+...+.+.|++++|.+.|++..+. .+.+...+..+...+.+.|++++|++.|++..+. .|+ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHH
Confidence 3455666777777778888888888777762 4556777777777777778888888777777654 233 3
Q ss_pred HHHHHHHHHHHccCCHHHHH
Q 009011 233 RALSVLMDTLVKGNSVEHAY 252 (546)
Q Consensus 233 ~~~~~ll~~~~~~g~~~~a~ 252 (546)
..+..+..++...|+.+.|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHHHhHhhhH
Confidence 34444444444444444333
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00097 Score=54.53 Aligned_cols=95 Identities=14% Similarity=0.069 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-C-----CH-----HHHHHHHHHHHccCCHHHHHHHHHHhhcC------
Q 009011 199 TMSTIMRRLVRGGRYDDAVEAFRGMKKYGVE-K-----DT-----RALSVLMDTLVKGNSVEHAYKVFLEFKDC------ 261 (546)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~-----~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------ 261 (546)
.+......+.+.|++++|++.|++..+.... | +. ..|..+..++.+.|++++|...+++....
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3444455566677777777777766553211 0 11 14444444444444444444444443332
Q ss_pred -CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 262 -IPLSSQIF----NILIHGWCKTRKVDDAQKAMKEMF 293 (546)
Q Consensus 262 -~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~ 293 (546)
.|.+...| +....++...|++++|+..|++..
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444444 555555555555555555555543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0013 Score=53.77 Aligned_cols=61 Identities=11% Similarity=0.043 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHH
Q 009011 443 TYAPLLKMCCRKKRMKVLNFLLTHMFKN-------DVSMDAGTY----ASLVRGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 443 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 504 (546)
.|..+..++.+.|++++|...+++.++. ++. +...| .....++...|++++|+..|++.++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5666666666667766666666666654 433 45566 7778888888999999998888764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00033 Score=69.65 Aligned_cols=88 Identities=16% Similarity=0.039 Sum_probs=47.1
Q ss_pred HHHcCCChHHHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh-----CCC--CCCHHHHH
Q 009011 170 VLGKSKKFCLMWELVKEMDELN------NGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKK-----YGV--EKDTRALS 236 (546)
Q Consensus 170 ~~~~~~~~~~a~~l~~~m~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~--~~~~~~~~ 236 (546)
.+...|++++|..++++..+.. ..+....+++.+...|...|++++|..++++..+ .|. +-...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3556677777777776665431 0122345667777777777777777777666532 110 11123344
Q ss_pred HHHHHHHccCCHHHHHHHHHH
Q 009011 237 VLMDTLVKGNSVEHAYKVFLE 257 (546)
Q Consensus 237 ~ll~~~~~~g~~~~a~~~~~~ 257 (546)
.|...|...|++++|..++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~ 418 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICK 418 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 444444555555555444433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.003 Score=50.81 Aligned_cols=111 Identities=14% Similarity=0.016 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 009011 280 RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGK----AKQINEA 355 (546)
Q Consensus 280 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a 355 (546)
++.++|.+.|++..+.|. ++.. +-..|...+..++|.+.|++..+.| +...+..+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 355667777777666652 2222 4455555566666777777766664 45566666666666 6677777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 009011 356 LKVYEKMKSDDCLPDTSFYSSLIFILSK----AGRVKDANEIFEDMKKQG 401 (546)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~ 401 (546)
.++|++..+.| +...+..|...|.. .+++++|.+.|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777777665 45566666666666 677777777777776654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00065 Score=67.56 Aligned_cols=124 Identities=7% Similarity=-0.016 Sum_probs=59.3
Q ss_pred HHhcCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHH
Q 009011 381 LSKAGRVKDANEIFEDMKKQ---GVVP----NVLTYNTMISSACARSEEENALKLLQKMEED-----L-CKPD-CETYAP 446 (546)
Q Consensus 381 ~~~~g~~~~A~~~~~~~~~~---~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~ 446 (546)
+...|++++|..++++..+. -+.+ ...+++.|..+|...|++++|..++++..+. | -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44556666666666555431 1111 1234555666666666666666666655421 1 0111 134555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh-----CCCC-C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009011 447 LLKMCCRKKRMKVLNFLLTHMFK-----NDVS-M-DAGTYASLVRGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 447 ll~~~~~~g~~~~a~~~~~~m~~-----~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (546)
|...|...|++++|..++++..+ .|.. | ...+.+.+-.++...|.+++|..++.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555443 2221 1 112233334444445555555555555543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0018 Score=47.24 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=8.4
Q ss_pred HHHHHHhcCChHHHHHHHHHh
Q 009011 203 IMRRLVRGGRYDDAVEAFRGM 223 (546)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m 223 (546)
+...+.+.|++++|+..|++.
T Consensus 15 la~~~~~~~~~~~A~~~~~~a 35 (91)
T 1na3_A 15 LGNAYYKQGDYDEAIEYYQKA 35 (91)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHH
Confidence 333333444444444444433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.001 Score=51.44 Aligned_cols=61 Identities=15% Similarity=-0.016 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 232 TRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEM 292 (546)
Q Consensus 232 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 292 (546)
...+..+..++...|++++|...|++.....|.+...|..+..+|...|++++|...|++.
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333333334444444444444443333333333444444444444444444444444443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00063 Score=52.06 Aligned_cols=65 Identities=14% Similarity=0.111 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCC
Q 009011 198 ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIP 263 (546)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 263 (546)
..+..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.+.+++.....|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 344444555555555555555555554432 33444444444455555555555555544444333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0023 Score=46.70 Aligned_cols=62 Identities=15% Similarity=0.155 Sum_probs=31.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 234 ALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 234 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
.+..+...+...|++++|...+++.....|.+..++..+...+.+.|++++|...+++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444555555555555555544434444445555555555555555555555554443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0026 Score=49.17 Aligned_cols=78 Identities=6% Similarity=-0.052 Sum_probs=51.4
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009011 251 AYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQE 329 (546)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (546)
|.+.|++.....|.+...+..+...|...|++++|...|++....... +...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555666777777777777777777777777776665432 455666666667777777777777666554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00094 Score=54.49 Aligned_cols=97 Identities=10% Similarity=0.044 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-
Q 009011 421 EEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKR----------MKVLNFLLTHMFKNDVSMDAGTYASLVRGLIES- 489 (546)
Q Consensus 421 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~- 489 (546)
.+++|.+.++...+.. +-+...|..+..++...++ +++|+..|++..+.++. +...|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhc
Confidence 3444444444444432 2233444444444443333 34666666666665444 555566666666554
Q ss_pred ----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009011 490 ----------GKLELACSFFEEMISKGIVPYHSTYKMLEEKL 521 (546)
Q Consensus 490 ----------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 521 (546)
|++++|.+.|++.++. .|+...|...+...
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT 134 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 4788888888888754 47766665555443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.001 Score=54.34 Aligned_cols=84 Identities=12% Similarity=0.068 Sum_probs=45.9
Q ss_pred CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 009011 211 GRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNS----------VEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTR 280 (546)
Q Consensus 211 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 280 (546)
+.+++|++.++...+.. +.+...+..+..++...++ +++|...|++.....|.+..+|+.+..+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 34455555555544432 3344444444444444433 346666666665555666666666666666553
Q ss_pred -----------CHHHHHHHHHHHHHC
Q 009011 281 -----------KVDDAQKAMKEMFQQ 295 (546)
Q Consensus 281 -----------~~~~a~~~~~~m~~~ 295 (546)
++++|.+.|++..+.
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh
Confidence 566666666666554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.003 Score=47.47 Aligned_cols=64 Identities=16% Similarity=0.034 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009011 264 LSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQ 328 (546)
Q Consensus 264 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 328 (546)
.+...+..+...|.+.|++++|...|++..+..+. +...|..+..+|...|++++|.+.+++..
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444555555555555555555555555444322 33344445555555555555555554443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0029 Score=47.49 Aligned_cols=64 Identities=17% Similarity=0.162 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 231 DTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 231 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (546)
+...+..+..++...|++++|...|++.....|.+...|..+..+|.+.|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444445555555555555555555555444455555566666666666666666666655543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.066 Score=57.23 Aligned_cols=128 Identities=11% Similarity=0.012 Sum_probs=67.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009011 305 TCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKA 384 (546)
Q Consensus 305 ~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 384 (546)
..++..+.+.|..++|+++.+. ... -.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~~---~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QDQ---KFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HHH---HHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC---------cch---heehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 5555666666666666654421 110 122334556777776664322 3556677777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 009011 385 GRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLL 464 (546)
Q Consensus 385 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 464 (546)
|+++.|.+.|..+.. |..+...+...|+.+...++.+.....| -++....++.+.|++++|.+++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHH
Confidence 777777777766531 2233344444556655555544444433 1223333344455555555444
Q ss_pred H
Q 009011 465 T 465 (546)
Q Consensus 465 ~ 465 (546)
.
T Consensus 760 ~ 760 (814)
T 3mkq_A 760 I 760 (814)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.066 Score=50.22 Aligned_cols=67 Identities=15% Similarity=0.074 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009011 262 IPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEK 330 (546)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 330 (546)
.+.+..+|.++...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.|++....
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 35555556555555555566666666666665553 45555555555555566666666666555554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.081 Score=49.64 Aligned_cols=63 Identities=8% Similarity=-0.023 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 370 DTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEE 434 (546)
Q Consensus 370 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 434 (546)
+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44444444444444455555555555544432 3444444444444445555555555554444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0087 Score=44.48 Aligned_cols=25 Identities=8% Similarity=0.203 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHh
Q 009011 199 TMSTIMRRLVRGGRYDDAVEAFRGM 223 (546)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m 223 (546)
.+..+...+...|++++|++.|++.
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333333444444444444444433
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.015 Score=56.71 Aligned_cols=62 Identities=13% Similarity=0.005 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 233 RALSVLMDTLVKGNSVEHAYKVFLEFKD--------CIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 233 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 294 (546)
.+++.|..+|...|++++|..++++... ..|....+++.|...|...|++++|+.++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 3445555555555555555555544321 1222234467777777777777777777766543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.021 Score=55.72 Aligned_cols=86 Identities=10% Similarity=0.053 Sum_probs=49.3
Q ss_pred hcCChHHHHHHHHHhhhCC---CCCC----HHHHHHHHHHHHccCCHHHHHHHHHHhhc--------CCCCCHHHHHHHH
Q 009011 209 RGGRYDDAVEAFRGMKKYG---VEKD----TRALSVLMDTLVKGNSVEHAYKVFLEFKD--------CIPLSSQIFNILI 273 (546)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~~---~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~li 273 (546)
++|++++|++++++..+.. +.|+ ..+++.+..+|...|++++|..++++... ..|....+++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 4456666666666554321 1111 34456666666666666666666654432 1222234577777
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 009011 274 HGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 274 ~~~~~~g~~~~a~~~~~~m~~ 294 (546)
..|...|++++|+.++++..+
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHH
Confidence 777777777777777776653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.14 Score=54.77 Aligned_cols=129 Identities=10% Similarity=0.054 Sum_probs=78.4
Q ss_pred HHHHcCCChHHHHH-HHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCC
Q 009011 169 DVLGKSKKFCLMWE-LVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNS 247 (546)
Q Consensus 169 ~~~~~~~~~~~a~~-l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 247 (546)
......+++++|.+ ++..+. +......+++.+.+.|.+++|+++.+.-. .-.......|+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~-------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~ 667 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE-------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQ 667 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC-------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTC
T ss_pred hHHHHhCCHHHHHHHHHhcCC-------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCC
Confidence 33445778888766 542222 02223666777778888888876653211 11233456788
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 009011 248 VEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEM 327 (546)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m 327 (546)
+++|.++.+.+ .+...|..+...+.+.|+++.|++.|..+.+ |..+...|...|+.+...++.+..
T Consensus 668 ~~~A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 668 LTLARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 88888876443 3667888888888888888888888887753 233344444455555555554444
Q ss_pred HHc
Q 009011 328 QEK 330 (546)
Q Consensus 328 ~~~ 330 (546)
...
T Consensus 734 ~~~ 736 (814)
T 3mkq_A 734 ETT 736 (814)
T ss_dssp HHT
T ss_pred HHc
Confidence 443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.37 Score=37.41 Aligned_cols=139 Identities=11% Similarity=0.095 Sum_probs=78.4
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009011 244 KGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDT 323 (546)
Q Consensus 244 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l 323 (546)
-.|.+++..++..+... +.+..-||-+|--....-+-+-..++++.+-.. -|... -|++..+...
T Consensus 19 ldG~v~qGveii~k~~~--ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis~----------C~NlKrVi~C 83 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITK--SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLDK----------CQNLKSVVEC 83 (172)
T ss_dssp HTTCHHHHHHHHHHHHH--HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGGG----------CSCTHHHHHH
T ss_pred HhhhHHHHHHHHHHHcC--CCCccccceeeeecchhhchhHHHHHHHHHhhh---cCcHh----------hhcHHHHHHH
Confidence 35666666666665543 234444555555555555555555555554332 12111 1222222222
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 324 LKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVV 403 (546)
Q Consensus 324 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 403 (546)
+-.+- .+.......+..+...|.-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-++|++
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 22211 13334555667777777777777777775443 3567777777778888888888888888877777654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.018 Score=56.16 Aligned_cols=86 Identities=12% Similarity=0.094 Sum_probs=51.5
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCC-CCC-HHHHHHHHH
Q 009011 419 RSEEENALKLLQKMEED---LCKPD----CETYAPLLKMCCRKKRMKVLNFLLTHMFK-----NDV-SMD-AGTYASLVR 484 (546)
Q Consensus 419 ~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~-~~~-~~~~~~li~ 484 (546)
.|++++|+.++++..+. -+.|+ ..+++.+..+|...|++++|..++++..+ .|. .|+ ..+|+.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35666666666665432 11122 24566666667777777777666666554 222 122 345777777
Q ss_pred HHHHcCChHHHHHHHHHHHH
Q 009011 485 GLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 485 ~~~~~g~~~~A~~~~~~m~~ 504 (546)
.|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 78888888888887777653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.039 Score=53.82 Aligned_cols=90 Identities=10% Similarity=-0.026 Sum_probs=57.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCC-CC-CHHHHH
Q 009011 415 SACARSEEENALKLLQKMEEDL---CKPD----CETYAPLLKMCCRKKRMKVLNFLLTHMFK-----NDV-SM-DAGTYA 480 (546)
Q Consensus 415 ~~~~~g~~~~A~~~~~~m~~~~---~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~~~-~~-~~~~~~ 480 (546)
.+...|++++|+.++++..+.. ..|+ ..+++.+..+|...|++++|..+++++.+ .|. .| ...+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445667777777777665431 1122 24566677777777777777777776654 222 12 234577
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 009011 481 SLVRGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 481 ~li~~~~~~g~~~~A~~~~~~m~~ 504 (546)
.|...|...|++++|..++++..+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 778888888888888888887654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.48 Score=39.10 Aligned_cols=100 Identities=11% Similarity=0.149 Sum_probs=48.0
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 009011 205 RRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDD 284 (546)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 284 (546)
....+.|+++.|.++.+.+ .+...|..|.+.....|+++-|++.|....+ +..+.-.|.-.|+.+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHH
Confidence 3344555555555555443 2344555555555555555555555555543 4444444555555544
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 009011 285 AQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTL 324 (546)
Q Consensus 285 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~ 324 (546)
..++-+.....| -++.....+.-.|+++++.++|
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHH
Confidence 444333333322 1223333344445555555554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.073 Score=39.20 Aligned_cols=54 Identities=15% Similarity=0.291 Sum_probs=25.6
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSSQ-IFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
+...|++++|.+.+++.....|.+.. .+..+..+|...|++++|...|++..+.
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33444444444444444443344444 4444555555555555555555554443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.12 Score=37.94 Aligned_cols=66 Identities=8% Similarity=0.067 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 439 PDCETYAPLLKMCCRKKR---MKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 439 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
.+...+..+..++...++ .++|..++++..+.++. +......+...+.+.|++++|...|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344555555555543333 46666666666665554 5666666666666777777777777776654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.39 Score=39.68 Aligned_cols=45 Identities=11% Similarity=0.168 Sum_probs=22.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 009011 277 CKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEM 327 (546)
Q Consensus 277 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m 327 (546)
.+.|+++.|.++.+++ -+...|..|.......|+++-|.+.|...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555555554443 14445555555555555555555555443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.7 Score=35.93 Aligned_cols=139 Identities=10% Similarity=0.082 Sum_probs=78.8
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009011 208 VRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQK 287 (546)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 287 (546)
.-.|..++..++..+..+ ..+..-||-++.-....-+-+-..++++.+-+.+..+ .+|++.....
T Consensus 18 ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis------------~C~NlKrVi~ 82 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD------------KCQNLKSVVE 82 (172)
T ss_dssp HHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG------------GCSCTHHHHH
T ss_pred HHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCcH------------hhhcHHHHHH
Confidence 345667777777777654 2344555555555555555555556666554433222 2334333333
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009011 288 AMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDC 367 (546)
Q Consensus 288 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 367 (546)
.+-.+- .+.......++.....|+-++..+++..+.. +.+|++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 332221 1333444555666677777777777777543 2455666666777777777777777777777777664
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.23 E-value=0.11 Score=41.88 Aligned_cols=65 Identities=14% Similarity=0.056 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009011 439 PDCETYAPLLKMCCRKK---RMKVLNFLLTHMFKND-VSMDAGTYASLVRGLIESGKLELACSFFEEMI 503 (546)
Q Consensus 439 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 503 (546)
++..+.-.+..++++.+ +.+++..++++..+.+ +.-+...+-.+.-++.+.|++++|.++++.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34444444444444444 3334444444444432 10123333444444555555555555555555
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.16 Score=38.05 Aligned_cols=26 Identities=4% Similarity=-0.111 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHh
Q 009011 198 ATMSTIMRRLVRGGRYDDAVEAFRGM 223 (546)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m 223 (546)
..+..+...+.+.|++..|...|+..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~A 31 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQA 31 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHH
Confidence 33444445555555555555555544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.14 Score=37.48 Aligned_cols=48 Identities=4% Similarity=0.099 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 248 VEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
.++|..++++.....|.++.....+...+.+.|++++|...|+++.+.
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444444444444444444555555555555555555555555443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=1.8 Score=38.99 Aligned_cols=85 Identities=9% Similarity=0.044 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCH
Q 009011 282 VDDAQKAMKEMFQQGFSPD---VVSYTCFIEHYCRE-----KDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKA-KQI 352 (546)
Q Consensus 282 ~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~-----g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~-g~~ 352 (546)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34566666666554 233 44666666666663 77777777777777653322345555566666663 777
Q ss_pred HHHHHHHHHHHhCCCC
Q 009011 353 NEALKVYEKMKSDDCL 368 (546)
Q Consensus 353 ~~a~~~~~~~~~~~~~ 368 (546)
+++.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777777766544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.88 E-value=0.33 Score=36.29 Aligned_cols=68 Identities=9% Similarity=0.003 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 009011 159 HTPEMYNTMVDVLGKSKKFCLMWELVKEMDELN-----NGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKY 226 (546)
Q Consensus 159 ~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (546)
.+..-+-.|...+.+.|+++.|...|+...+.. ........+..+..++.+.|++++|+..+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345566788999999999999999999887642 12356778888899999999999999999988764
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.33 E-value=0.37 Score=38.69 Aligned_cols=66 Identities=11% Similarity=0.121 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009011 264 LSSQIFNILIHGWCKTR---KVDDAQKAMKEMFQQGFSP--DVVSYTCFIEHYCREKDFRKVDDTLKEMQEK 330 (546)
Q Consensus 264 ~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 330 (546)
++..+...+.-++++.+ +++++..+|++..+.. .| ....+..+.-+|.+.|++++|.+.++.+.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44444444555555544 3345555555544432 11 1233333444445555555555555555543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.44 Score=42.87 Aligned_cols=84 Identities=11% Similarity=0.067 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChH
Q 009011 423 ENALKLLQKMEEDLCKPD---CETYAPLLKMCCR-----KKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIES-GKLE 493 (546)
Q Consensus 423 ~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~ 493 (546)
..|...+++..+. .|+ ...|..+...|.+ -|+.++|.+.|++..+.++.-+..++..+.+.++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3444444444443 233 2344444444554 255555555555555543332345555555555553 6666
Q ss_pred HHHHHHHHHHHCCCC
Q 009011 494 LACSFFEEMISKGIV 508 (546)
Q Consensus 494 ~A~~~~~~m~~~g~~ 508 (546)
+|.+.+++.+.....
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 666666666655444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.72 E-value=0.67 Score=36.84 Aligned_cols=114 Identities=12% Similarity=0.088 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCHH----HHHHHH---HHHHhcCChHHHHHHHHHHHhCC
Q 009011 405 NVLTYNTMISSACARSEE------ENALKLLQKMEEDLCKPDCE----TYAPLL---KMCCRKKRMKVLNFLLTHMFKND 471 (546)
Q Consensus 405 ~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~----~~~~ll---~~~~~~g~~~~a~~~~~~m~~~~ 471 (546)
|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|..+- ..+...++.++|.++|+.+.+..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455555555555555666 6666666666553 344321 111110 01233478888999998887743
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009011 472 VSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKL 521 (546)
Q Consensus 472 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 521 (546)
-.- ...|-...+.-.++|+...|.+++...+..+.+| ...+...++.+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~nl 138 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRNL 138 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHhh
Confidence 232 7777777777789999999999999999776544 44455555555
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.84 E-value=12 Score=39.97 Aligned_cols=306 Identities=11% Similarity=0.078 Sum_probs=169.7
Q ss_pred HHHHHHHHHhcCChHHH-HH-HHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCC-CCCH--HHHHHHHH
Q 009011 200 MSTIMRRLVRGGRYDDA-VE-AFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCI-PLSS--QIFNILIH 274 (546)
Q Consensus 200 ~~~li~~~~~~g~~~~A-~~-~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~li~ 274 (546)
-.++..++...|-..+. +. ..+++.+. .+....-...--+....|+.+++..++....... ..+. ..-..+.-
T Consensus 342 A~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaL 419 (963)
T 4ady_A 342 AVSVANGFMHAGTTDNSFIKANLPWLGKA--QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGL 419 (963)
T ss_dssp HHHHHHHHHTTTTCCCHHHHHCHHHHHHC--CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcchhhhcchhhhhcc--chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHH
Confidence 34668888888854332 21 12344332 2222223333345677888888888776654311 2232 33444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCHHH--HH--HH
Q 009011 275 GWCKTRKVDDAQKAMKEMFQQGF-------SPDVVSYTCFIEHYCREKDF-RKVDDTLKEMQEKGCKPSVIT--YT--IV 342 (546)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~~~g~-------~~~~~~~~~li~~~~~~g~~-~~a~~l~~~m~~~g~~p~~~~--~~--~l 342 (546)
+...+|.-+++...+.......- .+....-..+--+++-.|.- +++.+.+..+.... +... .. ++
T Consensus 420 Gli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd---~~~~~~~AalAL 496 (963)
T 4ady_A 420 GLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND---SATSGEAAALGM 496 (963)
T ss_dssp HHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHH
Confidence 66677766677777777654311 01112222333334434432 45666666666542 2211 12 22
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHH-HHH---HHHHHH
Q 009011 343 MHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILS--KAGRVKDANEIFEDMKKQGVVPNVL-TYN---TMISSA 416 (546)
Q Consensus 343 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~p~~~-~~~---~li~~~ 416 (546)
...+.-.|+-+....++..+.+.. +..+...+..+++ ..|+.+.+..+++.+... .+.. -|. ++.-+|
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAy 570 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAY 570 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHT
T ss_pred hhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHh
Confidence 333446678888888888777642 3344444444444 678888888888888763 2332 233 234467
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh-HHH
Q 009011 417 CARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKL-ELA 495 (546)
Q Consensus 417 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A 495 (546)
+..|+.....++++.+.+.. ..+..-...+.-++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|.. .+|
T Consensus 571 aGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~a 648 (963)
T 4ady_A 571 AGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSA 648 (963)
T ss_dssp TTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHH
T ss_pred cCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHH
Confidence 78889887777888887642 2233333333334555677777777777666543 34555555555555556654 578
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009011 496 CSFFEEMISKGIVPYHSTYKMLEEKL 521 (546)
Q Consensus 496 ~~~~~~m~~~g~~p~~~~~~~l~~~~ 521 (546)
...+..+.. .++..+-...+.++
T Consensus 649 id~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 649 IDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp HHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHcc---CCCHHHHHHHHHHH
Confidence 888888863 34555554444443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.47 E-value=1.9 Score=34.24 Aligned_cols=51 Identities=6% Similarity=-0.011 Sum_probs=23.7
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009011 315 KDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDD 366 (546)
Q Consensus 315 g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 366 (546)
++.++|.++|+.+.+.+-.. ...|......-.+.|++..|.+++......+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 45555555555554432121 3334333344444555555555555555444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.31 E-value=13 Score=39.47 Aligned_cols=227 Identities=9% Similarity=0.004 Sum_probs=115.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhCCC-------CCCHHHHHHHHHHHHhcCC-hHHHHHHHHHhhhCCCCCCHHHH--
Q 009011 166 TMVDVLGKSKKFCLMWELVKEMDELNNG-------YVSLATMSTIMRRLVRGGR-YDDAVEAFRGMKKYGVEKDTRAL-- 235 (546)
Q Consensus 166 ~ll~~~~~~~~~~~a~~l~~~m~~~~~~-------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~-- 235 (546)
.+.-++..+|.-+++..++....... . ......-..+.-+++-.|. -+++.+.+..+.... .+.....
T Consensus 416 llaLGli~ag~~~~~~~lL~~~L~~~-~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd-~~~~~~~Aa 493 (963)
T 4ady_A 416 LYGLGLIYAGFGRDTTDYLKNIIVEN-SGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND-SATSGEAAA 493 (963)
T ss_dssp HHHHHHHTTTTTHHHHHHHHHHHHHH-SSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHcCc-cccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 33344555666566777666655422 1 0111112222233333343 245666666655422 1111111
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH---HHHHHH
Q 009011 236 SVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPD-VVSYT---CFIEHY 311 (546)
Q Consensus 236 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~---~li~~~ 311 (546)
..+...++..|+-+....++..+.+....+..-.-.+.-++...|+.+.+..+++.+... .+ ..-|. ++..+|
T Consensus 494 lALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAy 570 (963)
T 4ady_A 494 LGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAY 570 (963)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHT
T ss_pred HHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHh
Confidence 223333456677777777776655433323333444444555778888888887777764 22 22333 233466
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHH
Q 009011 312 CREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRV-KDA 390 (546)
Q Consensus 312 ~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A 390 (546)
+..|+.....+++..+.... ..++.....+.-++...|+.+.+.++++.+.+.+ .|...--.++.-+....|.. .++
T Consensus 571 aGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~a 648 (963)
T 4ady_A 571 AGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSA 648 (963)
T ss_dssp TTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHH
T ss_pred cCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHH
Confidence 77788777777887777642 1122222222233334566666677776666544 34443333344444444443 567
Q ss_pred HHHHHHHHH
Q 009011 391 NEIFEDMKK 399 (546)
Q Consensus 391 ~~~~~~~~~ 399 (546)
.+++..+..
T Consensus 649 id~L~~L~~ 657 (963)
T 4ady_A 649 IDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcc
Confidence 777777765
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.22 E-value=0.68 Score=48.06 Aligned_cols=128 Identities=12% Similarity=0.061 Sum_probs=85.3
Q ss_pred HHHHHHHHHcCCC-hHHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHhcC-ChHHHHHHHHHhhhC------CCC-CCHH
Q 009011 164 YNTMVDVLGKSKK-FCLMWELVKEMDELNNGYVSLATMS-TIMRRLVRGG-RYDDAVEAFRGMKKY------GVE-KDTR 233 (546)
Q Consensus 164 ~~~ll~~~~~~~~-~~~a~~l~~~m~~~~~~~~~~~~~~-~li~~~~~~g-~~~~A~~~~~~m~~~------~~~-~~~~ 233 (546)
-..|+..+...++ .+.|..+|+++.... +.....+. .++..+.+.+ +--+|++++.+..+. ... .+..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 4556666666777 588999999998843 32222232 2333333332 233466666554321 111 1211
Q ss_pred ----------HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 234 ----------ALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMF 293 (546)
Q Consensus 234 ----------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 293 (546)
.+..-.+.|...|+++.|.++-++.....|.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122223446678999999999999988899999999999999999999999999999874
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.06 E-value=5.8 Score=38.62 Aligned_cols=189 Identities=11% Similarity=0.213 Sum_probs=103.9
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcC
Q 009011 280 RKVDDAQKAMKEMFQQ-----GFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALG----KAK 350 (546)
Q Consensus 280 g~~~~a~~~~~~m~~~-----g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~----~~g 350 (546)
|++++|.+.+-.+.+. ...........++..|...|+++...+.+..+...... -......++..+. ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 6778887777666542 23334556777888888888888887777665543222 1222333443332 222
Q ss_pred CHHH--HHHHHHHHHh--CC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCC---HHHHHHHHHHHH
Q 009011 351 QINE--ALKVYEKMKS--DD-CLP---DTSFYSSLIFILSKAGRVKDANEIFEDMKK--QGVVPN---VLTYNTMISSAC 417 (546)
Q Consensus 351 ~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~p~---~~~~~~li~~~~ 417 (546)
..+. -..+.+.+.. .| +-. .......|...|...|++.+|.+++.++.. .|.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2221 1111111110 11 011 122345667777788888888888887753 222211 234555667777
Q ss_pred hcCCHHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009011 418 ARSEEENALKLLQKMEE----DLCKPDC--ETYAPLLKMCCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 418 ~~g~~~~A~~~~~~m~~----~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 469 (546)
..+++.+|..++.++.. ....|+. ..|...+..+...+++.+|...|.++.+
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 77888888887777632 2112221 3455566666777777777777666654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.04 E-value=3.6 Score=45.68 Aligned_cols=190 Identities=11% Similarity=0.038 Sum_probs=92.8
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-----------------
Q 009011 238 LMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ----G----------------- 296 (546)
Q Consensus 238 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g----------------- 296 (546)
++..+...+..+.+.++.... +.+......+..+|...|++++|...|.+.... .
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 334444455555444433222 234444445555566666666666666443110 0
Q ss_pred -CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 009011 297 -FSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSV----ITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDT 371 (546)
Q Consensus 297 -~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 371 (546)
...-..-|..++..+-+.|.++.+.++-....+....-+. ..|..+.+.+...|++++|...+-.+...... .
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~ 971 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--K 971 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--H
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--H
Confidence 0001123566666777777777777666655543222121 14566677777777777777777666654332 3
Q ss_pred HHHHHHHHHHHhc------------CCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 009011 372 SFYSSLIFILSKA------------GRVKDANEIFEDMKKQ--GVVPNVLTYNTMISSACARSEEENAL-KLLQKME 433 (546)
Q Consensus 372 ~~~~~li~~~~~~------------g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~ 433 (546)
.....++..+|.. |..++..+++....+. .+...+.-|..|=.-+..+|++.+|- -+|+.+.
T Consensus 972 ~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 4445555544433 3455666666433211 01111122333333344556655444 4455543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.42 E-value=1.3 Score=34.10 Aligned_cols=83 Identities=12% Similarity=-0.032 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHH
Q 009011 422 EENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKV---LNFLLTHMFKND-VSMDAGTYASLVRGLIESGKLELACS 497 (546)
Q Consensus 422 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~ 497 (546)
...+.+-|.+....| .++..+--.+..++++...... +..++++..+.+ +.-.....-.+.-++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344444444444433 2555555555556666555444 666666666543 11133444555566777777777777
Q ss_pred HHHHHHHC
Q 009011 498 FFEEMISK 505 (546)
Q Consensus 498 ~~~~m~~~ 505 (546)
.++.+.+.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777643
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.26 E-value=1.1 Score=46.60 Aligned_cols=126 Identities=10% Similarity=0.110 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCC-hHHHHHHHHHhhhCCCCCCHHHH--HHHHHHHHccCC-HHHHHHHHHHhh-------cCCC-CCH
Q 009011 199 TMSTIMRRLVRGGR-YDDAVEAFRGMKKYGVEKDTRAL--SVLMDTLVKGNS-VEHAYKVFLEFK-------DCIP-LSS 266 (546)
Q Consensus 199 ~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~g~-~~~a~~~~~~~~-------~~~~-~~~ 266 (546)
....++..+...|+ .+.|+++|+++.+. .|...++ ..++..+...++ --+|.+++.+.. ...+ .+.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 34455666655666 57799999999875 3433332 333333333332 223444443321 1122 221
Q ss_pred ----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 009011 267 ----------QIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEM 327 (546)
Q Consensus 267 ----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m 327 (546)
...+.=++.+...|+++-|+++-++....-+. +-.+|..|..+|...|+++.|+-.++.+
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 12223345567789999999999998876433 6889999999999999999999988876
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.07 E-value=2.5 Score=40.35 Aligned_cols=73 Identities=12% Similarity=0.031 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 009011 445 APLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMIS-----KGIVPYHSTYKMLE 518 (546)
Q Consensus 445 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l~ 518 (546)
..++.++...|+.+++...+..+....+- +...|..+|.+|.+.|+..+|.+.|+++.+ .|+.|...+-...-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 33455566667777776666666654433 666777777777777777777777766543 27777766644333
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=89.83 E-value=1.7 Score=33.52 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=11.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 271 ILIHGWCKTRKVDDAQKAMKEMFQ 294 (546)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~~~m~~ 294 (546)
.|.-++.+.|++++|.+.++.+.+
T Consensus 79 ~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 79 YLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444444444444444444
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.20 E-value=14 Score=41.00 Aligned_cols=189 Identities=13% Similarity=0.077 Sum_probs=110.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C----------------
Q 009011 307 FIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSD----D---------------- 366 (546)
Q Consensus 307 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~---------------- 366 (546)
++..+.+.+..+-+.++... ++.+....-.+..++...|++++|.+.|.+.... +
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 33444455555555443322 2234444445667788899999999998764210 0
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009011 367 --CLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNV----LTYNTMISSACARSEEENALKLLQKMEEDLCKPD 440 (546)
Q Consensus 367 --~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 440 (546)
...-..-|..++..+.+.+.++.+.++-....+....-+. ..|..+.+++...|++++|...+-.+.... --
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LK 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SC
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HH
Confidence 0011245677888888888888888887766543221121 257778888888899999988887776653 23
Q ss_pred HHHHHHHHHHHHhcCChHH------------HHHHHHHHHh-C-CCCCCHHHHHHHHHHHHHcCChHHHHH-HHHHH
Q 009011 441 CETYAPLLKMCCRKKRMKV------------LNFLLTHMFK-N-DVSMDAGTYASLVRGLIESGKLELACS-FFEEM 502 (546)
Q Consensus 441 ~~~~~~ll~~~~~~g~~~~------------a~~~~~~m~~-~-~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m 502 (546)
...+..|+...|..|..+. ..+++..-.+ . .+......|..|-.-+...|++..|.. +|+.+
T Consensus 971 ~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence 4567777777776665443 3333332211 1 112122345555555666777665544 34443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.18 E-value=1.5 Score=41.91 Aligned_cols=54 Identities=11% Similarity=0.158 Sum_probs=27.3
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 239 MDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEM 292 (546)
Q Consensus 239 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 292 (546)
+..+...|+.+++...+..+....|.+...|..+|.++.+.|+..+|++.|+.+
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444555555555554444444555555555555555555555555555544
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.99 E-value=1.6 Score=31.91 Aligned_cols=61 Identities=11% Similarity=0.188 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 009011 214 DDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIH 274 (546)
Q Consensus 214 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~ 274 (546)
-+..+-++.+....+.|++....+.+.+|-+.+++..|.++++.++........+|..+++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 3455555666666667777777777777777777777777777776644444445655543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.44 E-value=19 Score=34.92 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=34.2
Q ss_pred CChHHHHHHHHHHHhh----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 009011 175 KKFCLMWELVKEMDEL----NNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKK 225 (546)
Q Consensus 175 ~~~~~a~~l~~~m~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (546)
|+++.|.+.+-.+.+. ....-+......++..+.+.|+++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6777787776655542 11234567777788888888888887777766643
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=87.78 E-value=26 Score=35.63 Aligned_cols=141 Identities=10% Similarity=0.062 Sum_probs=69.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHH-HHHHHHHH
Q 009011 164 YNTMVDVLGKSKKFCLMWELVKEMDELNNGYV-SLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTR-ALSVLMDT 241 (546)
Q Consensus 164 ~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~ll~~ 241 (546)
|.....++ +.|+++.+..+...+.. .+. ....|..+...+ .....++...++++-.. .|-.. .-..-+..
T Consensus 10 ~~~a~~a~-~~~~~~~~~~l~~~l~~---~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~---~p~~~~Lr~~~l~~ 81 (618)
T 1qsa_A 10 YAQIKQAW-DNRQMDVVEQMMPGLKD---YPLYPYLEYRQITDDL-MNQPAVTVTNFVRANPT---LPPARTLQSRFVNE 81 (618)
T ss_dssp HHHHHHHH-HTTCHHHHHHHSGGGTT---STTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTT---CHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HCCCHHHHHHHHHhhcC---CCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCC---ChhHHHHHHHHHHH
Confidence 44444433 45777777666655533 222 122332222221 12244544444444321 22222 22444555
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009011 242 LVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDF 317 (546)
Q Consensus 242 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 317 (546)
+.+.+++.....++. ..|.+...-.....+....|+..+|......+=..|.. ....+..++..+.+.|.+
T Consensus 82 l~~~~~w~~~l~~~~----~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 82 LARREDWRGLLAFSP----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHTTCHHHHHHHCC----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCS
T ss_pred HHhCCCHHHHHHhcc----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCC
Confidence 666777665554332 23556666667777777778777666665555444322 333444555555544443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.88 E-value=19 Score=33.15 Aligned_cols=111 Identities=12% Similarity=0.132 Sum_probs=63.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH----HHhhhCCCCCCHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAF----RGMKKYGVEKDTRALSVL 238 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~~~~~~~~~l 238 (546)
+|.++..=|.+.+++++|++++-.- ...+.+.|+...|-++- +-+.+.++++|......+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G----------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL 100 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV----------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKL 100 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4456666777888888888876442 33445556655544443 444556677777777777
Q ss_pred HHHHHccCCHH--------HHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 239 MDTLVKGNSVE--------HAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAM 289 (546)
Q Consensus 239 l~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 289 (546)
+..+.....-+ +|.++-.+.......++.....+...|.+.+++.+|+..|
T Consensus 101 ~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 101 LGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 66665543211 1111111111123345666666777777777777766655
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=86.51 E-value=9.4e-05 Score=70.69 Aligned_cols=235 Identities=10% Similarity=0.074 Sum_probs=133.8
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHH
Q 009011 159 HTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVL 238 (546)
Q Consensus 159 ~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 238 (546)
-.+.+|..|..+..+.+++.+|++-|-+ ..++..|..+|....+.|.+++-+..+...++. ..++..=+.|
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk-------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteL 122 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETEL 122 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC-------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh-------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHH
Confidence 3456778888888888888887765522 234556777788888888888888888776654 3333444577
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009011 239 MDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFR 318 (546)
Q Consensus 239 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 318 (546)
+-+|++.+++.+.++++ ..++..-...+.+-|...|.++.|.-+|..+.. |..|...+.+.|++.
T Consensus 123 i~ayAk~~rL~elEefl------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq 187 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFI------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQ 187 (624)
T ss_dssp HHHHHTSCSSSTTTSTT------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGG
T ss_pred HHHHHhhCcHHHHHHHH------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHH
Confidence 88888888776544432 123443445666667777777766655544432 223333444555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 319 KVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMK 398 (546)
Q Consensus 319 ~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 398 (546)
.|.+.-++ .-++.||..+..+|...+++..|.-.--.+.-.. | -...++..|-..|.+++...+++.-.
T Consensus 188 ~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha---d--eL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 188 AAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA---D--ELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp SSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH---H--HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 55432211 1144466666666666666665544333222111 0 11224555666666666666666554
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 399 KQGVVPNVLTYNTMISSACARSEEENALKLLQ 430 (546)
Q Consensus 399 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 430 (546)
.. -......|+-|.-.|++- ++++..+.++
T Consensus 257 gl-ErAHmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 257 GL-ERAHMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp TS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred CC-CchhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 21 123455566666666654 4444444443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=85.54 E-value=34 Score=34.77 Aligned_cols=274 Identities=10% Similarity=0.090 Sum_probs=131.4
Q ss_pred ChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 009011 176 KFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVF 255 (546)
Q Consensus 176 ~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 255 (546)
..+++...+++-.. .+.....-+.-+..+.+.+++...++.+.. .+.+...-+....+....|+..+|....
T Consensus 54 ~~~ev~~Fl~~~~~---~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~ 125 (618)
T 1qsa_A 54 PAVTVTNFVRANPT---LPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGA 125 (618)
T ss_dssp CHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 45555555544332 344444555667778888888877765443 2556666677788888889988777777
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 009011 256 LEFKDCIPLSSQIFNILIHGWCKTRKVDD--AQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCK 333 (546)
Q Consensus 256 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~--a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 333 (546)
..+-......+..++.++..+.+.|.+.. ...=++.+...| +...-..++... . .+.....+.+..+... +
T Consensus 126 ~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~--p 198 (618)
T 1qsa_A 126 KELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANN--P 198 (618)
T ss_dssp HHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHC--G
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhC--h
Confidence 66544334455567777777777665432 333333333332 111111121111 0 1111111112222221 1
Q ss_pred CCHHHHH--------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHH
Q 009011 334 PSVITYT--------------IVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYS----SLIFILSKAGRVKDANEIFE 395 (546)
Q Consensus 334 p~~~~~~--------------~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~ 395 (546)
++..... ..+.-+.+ .+.+.|...+....+.. ..+..... .+...+...+...++...+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~ 276 (618)
T 1qsa_A 199 NTVLTFARTTGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRD 276 (618)
T ss_dssp GGHHHHHHHSCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHH
T ss_pred HhHHHHHhccCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 1221111 01112222 25566666666665432 12222222 22222223332344555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009011 396 DMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFK 469 (546)
Q Consensus 396 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 469 (546)
...... .+.....-.+....+.|+++.|...|+.|......-+...|. +.+++...|+.++|..+|..+..
T Consensus 277 ~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW-~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 277 DAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYW-QADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHH-HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHH-HHHHHHHcCCHHHHHHHHHHHhc
Confidence 544322 233333333344445677777777777665432111112232 34455667777777777777654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.46 E-value=8.8 Score=28.05 Aligned_cols=42 Identities=10% Similarity=0.189 Sum_probs=18.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 391 NEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKM 432 (546)
Q Consensus 391 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 432 (546)
.+-++.+....+.|++....+.+++|.+.+++..|.++++-+
T Consensus 30 rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~i 71 (109)
T 1v54_E 30 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVV 71 (109)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333333333344444444444444444444444444444444
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.21 E-value=25 Score=32.09 Aligned_cols=112 Identities=11% Similarity=0.078 Sum_probs=65.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH----HHHhhhCCCCCCHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEA----FRGMKKYGVEKDTRALSVL 238 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~~~~~~~~~l 238 (546)
.|.++..=|.+.+++++|++++..- ...+.+.|+...|-++ .+-..+.+++++......+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g----------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl 98 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG----------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARL 98 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4556677777778888887776543 3344555666555443 4444556777777777777
Q ss_pred HHHHHccCCH--------HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009011 239 MDTLVKGNSV--------EHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMK 290 (546)
Q Consensus 239 l~~~~~~g~~--------~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 290 (546)
+..+.....- .+|.++-.+.......++.....+...|.+.|++.+|+..|-
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 7665543211 112222111111123466777777777777777777776553
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=82.85 E-value=5.1 Score=31.02 Aligned_cols=58 Identities=12% Similarity=0.205 Sum_probs=34.2
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 009011 216 AVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILI 273 (546)
Q Consensus 216 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 273 (546)
..+-++.+....+.|++......+.+|-+.+++..|.++|+.++.+......+|..++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 3444444555556666666666666666666666666666666654444444455544
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=82.49 E-value=34 Score=32.42 Aligned_cols=93 Identities=11% Similarity=0.006 Sum_probs=52.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHH-
Q 009011 271 ILIHGWCKTRKVDDAQKAMKEMFQQGFSPD-----VVSYTCFIEHYCREKDFRKVDDTLKEMQEK--GCKPSVITYTIV- 342 (546)
Q Consensus 271 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--g~~p~~~~~~~l- 342 (546)
-++..|...|++.+|.+++.++.+.--..| ...|-.-+..|...+++.++...+...... .+.+++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 567777777777777777777665311111 223444556677777777777777666532 222333322211
Q ss_pred ---HHHHH-hcCCHHHHHHHHHHHH
Q 009011 343 ---MHALG-KAKQINEALKVYEKMK 363 (546)
Q Consensus 343 ---i~~~~-~~g~~~~a~~~~~~~~ 363 (546)
...+. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 12234 5677777777666553
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=81.74 E-value=13 Score=28.80 Aligned_cols=66 Identities=11% Similarity=0.052 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009011 334 PSVITYTIVMHALGKAKQI---NEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKK 399 (546)
Q Consensus 334 p~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 399 (546)
|+..+--.+..++.++.+. .+++.+++++.+.+..-.....-.+.-++.+.|++++|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444433444444444432 23445555544433111233333444455555555555555555554
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=81.39 E-value=14 Score=28.61 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009011 459 VLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEK 520 (546)
Q Consensus 459 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 520 (546)
+..+-++.+...++.|+..+....+.+|-+.+++.-|.++|+-.+.+- .+...+|..+++-
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE 131 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence 344455555566677777777777777777777777777777766552 2334455555543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=80.06 E-value=19 Score=27.92 Aligned_cols=73 Identities=11% Similarity=0.081 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 009011 438 KPDCETYAPLLKMCCRKKR---MKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHS 512 (546)
Q Consensus 438 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 512 (546)
.|+..|--.+..++.+..+ ..++..+++++.+.+..-....+-.+.-++.+.|++++|.++.+.+.+ +.|+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 5666655555556666554 345677777777655333456666677778888888888888888774 345543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 546 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.23 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.22 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.19 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.15 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.12 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.12 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.04 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.03 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.99 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.98 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.5 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.5 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.42 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.41 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.39 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.37 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.33 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.33 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.3 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.23 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.21 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.2 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.15 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.11 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.07 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.02 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.97 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.93 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.9 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.88 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.73 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.66 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.63 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.63 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.62 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.59 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.58 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.57 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.55 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.54 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.47 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.44 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.43 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.37 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.28 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.1 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.79 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.55 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.39 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.14 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.06 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.68 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.48 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.68 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.29 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.15 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 89.48 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 85.09 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 84.37 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 83.54 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3e-19 Score=172.64 Aligned_cols=375 Identities=11% Similarity=0.057 Sum_probs=287.4
Q ss_pred CChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009011 139 NDLTPAFGFFTWAKTQTGYMHTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVE 218 (546)
Q Consensus 139 ~~~~~a~~~f~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 218 (546)
++.+.|+..+..+... .+-+..++..+..+|.+.|++++|.+.|++..+ . .|.+..++..+...|.+.|++++|++
T Consensus 13 G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~-~p~~~~a~~~l~~~~~~~g~~~~A~~ 88 (388)
T d1w3ba_ 13 GDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-Q-NPLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHhhhhcccccccc
Confidence 4566777777766533 234567778888888888888888888888777 3 55667788888888888888888888
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 219 AFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFS 298 (546)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 298 (546)
.+....+.. +.+..............+....+............................+....+...+.........
T Consensus 89 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (388)
T d1w3ba_ 89 HYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT
T ss_pred ccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcc
Confidence 888877654 4444444445555555555555555554444444555666666777777888888888888877765433
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009011 299 PDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLI 378 (546)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 378 (546)
+...+..+...+...|++++|...++...+.. +-+...+..+...+...|++++|...+.+....+ +.+...+..+.
T Consensus 168 -~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 244 (388)
T d1w3ba_ 168 -FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLA 244 (388)
T ss_dssp -CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred -hhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHH
Confidence 56777888888889999999999999888764 2366788888899999999999999999888765 44677788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 009011 379 FILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMK 458 (546)
Q Consensus 379 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 458 (546)
..+.+.|++++|...|++..+... -+..+|..+...+...|++++|.+.++...... +.+...+..+...+...|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 322 (388)
T d1w3ba_ 245 CVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHH
Confidence 899999999999999999887643 356788888899999999999999999887764 567788888888999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCh
Q 009011 459 VLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPY-HSTYKMLEEKLEKKRL 526 (546)
Q Consensus 459 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 526 (546)
+|...+++..+..+. +..++..+..+|.+.|++++|...|++.++. .|+ ...+..+...|.+.|+
T Consensus 323 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 323 EAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 999999998886554 6788888999999999999999999998854 454 5677778777776654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2e-19 Score=173.94 Aligned_cols=365 Identities=11% Similarity=-0.008 Sum_probs=307.2
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccC
Q 009011 167 MVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGN 246 (546)
Q Consensus 167 ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 246 (546)
+...+-+.|++++|.+.|+++.+ . .|.+..++..+...+.+.|++++|++.|++..+.. +.+..++..+..++.+.|
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~-~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWR-Q-EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhc
Confidence 45667788999999999999988 3 56788999999999999999999999999998764 567889999999999999
Q ss_pred CHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 009011 247 SVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKE 326 (546)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~ 326 (546)
++++|.+.+.......+.+..............+....+............. ...............+....+...+..
T Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHH
Confidence 9999999999988877778888777777777777777777776666655433 444455566677778888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009011 327 MQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNV 406 (546)
Q Consensus 327 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 406 (546)
..... +-+...+..+...+...|++++|...+++..+.. +-+..++..+...+...|++++|...++.....+. .+.
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~ 237 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCH
T ss_pred hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHH
Confidence 77764 3367788888899999999999999999988764 34678889999999999999999999999887553 467
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009011 407 LTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGL 486 (546)
Q Consensus 407 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 486 (546)
..+..+...+.+.|++++|...|++..+.. +-+..++..+...+...|++++|...++........ +...+..+...+
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc-cchhhhHHHHHH
Confidence 788888999999999999999999998864 445788899999999999999999999998886544 788999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 487 IESGKLELACSFFEEMISKGIVPY-HSTYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
...|++++|.+.|++.++. .|+ ..++..+...+...|++++|.+.++..-+..+
T Consensus 316 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P 370 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999865 354 66788889999999999999999998776544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.1e-12 Score=122.82 Aligned_cols=225 Identities=10% Similarity=0.037 Sum_probs=112.6
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009011 207 LVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQ 286 (546)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 286 (546)
+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...|.+..+..|.+...+..+...|...|++++|.
T Consensus 29 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 107 (323)
T d1fcha_ 29 RLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQAC 107 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence 444445555555554444432 2334444444444444555555555554444434444455555555555555555555
Q ss_pred HHHHHHHHCCCCC--------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCC
Q 009011 287 KAMKEMFQQGFSP--------------DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKG-CKPSVITYTIVMHALGKAKQ 351 (546)
Q Consensus 287 ~~~~~m~~~g~~~--------------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~~~~~li~~~~~~g~ 351 (546)
+.+++........ +.......+..+...+.+.++.+.+....+.. ...+...+..+...+...|+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~ 187 (323)
T d1fcha_ 108 EILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE 187 (323)
T ss_dssp HHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC
T ss_pred cchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 5555544431110 00001111122233344555555555554432 22344555556666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009011 352 INEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQK 431 (546)
Q Consensus 352 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 431 (546)
+++|...|++..... +-+..+|..+..+|.+.|++++|.+.|++..+... -+..+|..+..+|.+.|++++|++.|++
T Consensus 188 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 265 (323)
T d1fcha_ 188 YDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLE 265 (323)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred Hhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhh-ccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666666665543 23455566666666666666666666666655321 1445566666666666666666666666
Q ss_pred HHH
Q 009011 432 MEE 434 (546)
Q Consensus 432 m~~ 434 (546)
.++
T Consensus 266 al~ 268 (323)
T d1fcha_ 266 ALN 268 (323)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.2e-12 Score=122.62 Aligned_cols=229 Identities=10% Similarity=0.021 Sum_probs=140.4
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009011 238 LMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDF 317 (546)
Q Consensus 238 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 317 (546)
....+.+.|++++|...|+++.+..|.+..+|..+..++...|++++|...|++..+..+. +...|..+...|...|++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccccc
Confidence 4556778899999999999988888888999999999999999999999999998876543 677888888899999999
Q ss_pred hHHHHHHHHHHHcCCCC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHH
Q 009011 318 RKVDDTLKEMQEKGCKP--------------SVITYTIVMHALGKAKQINEALKVYEKMKSDDC-LPDTSFYSSLIFILS 382 (546)
Q Consensus 318 ~~a~~l~~~m~~~g~~p--------------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~ 382 (546)
++|.+.++......... +.......+..+...+...++.+.+.+..+... ..+..++..+...+.
T Consensus 104 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~ 183 (323)
T d1fcha_ 104 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 183 (323)
T ss_dssp HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred cccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 99999998887642110 000000111222233344455555554443321 123444555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009011 383 KAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNF 462 (546)
Q Consensus 383 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 462 (546)
..|++++|...+++...... -+...|..+...+...|++++|.+.+++..+.. +-+..++..+..+|.+.|++++|..
T Consensus 184 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~ 261 (323)
T d1fcha_ 184 LSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVE 261 (323)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHH
Confidence 55555555555555544321 134455555555555555555555555555432 2234445555555555555555555
Q ss_pred HHHHHHh
Q 009011 463 LLTHMFK 469 (546)
Q Consensus 463 ~~~~m~~ 469 (546)
.|++..+
T Consensus 262 ~~~~al~ 268 (323)
T d1fcha_ 262 HFLEALN 268 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=3.3e-09 Score=97.96 Aligned_cols=198 Identities=6% Similarity=0.001 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009011 161 PEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGR-YDDAVEAFRGMKKYGVEKDTRALSVLM 239 (546)
Q Consensus 161 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~ll 239 (546)
..+|+.+..++.+.+.+++|+++++++.+ - .|.+..+|+.....+...|+ +++|++.++...+.. +.+..+|..+.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~-l-nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~ 119 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIE-L-NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH-H-CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHh
Confidence 45677777777778888888888888877 3 56677777777777777654 777888777776653 55667777777
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKD--- 316 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--- 316 (546)
.++.+.|+.++|.+.+.++.+..|.+..+|+.+...+.+.|++++|...++++++..+. +...|+.+...+.+.+.
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccch
Confidence 77777777777777777777666777777777777777777777777777777766443 55666665555555444
Q ss_pred ---hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009011 317 ---FRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKS 364 (546)
Q Consensus 317 ---~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 364 (546)
+++|++.+....+.. +.+...|..+...+.. ...+++.+.++...+
T Consensus 199 ~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence 345555555555542 2244444444433332 233445555544443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=2.2e-09 Score=99.16 Aligned_cols=234 Identities=8% Similarity=0.010 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 197 LATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGN-SVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
..+|+.+...+.+.+++++|+++++++.+.. +-+..+|+....++...| ++++|...++......|.+..+|+.+...
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Confidence 4455556666777788888888888887754 556667777777777765 47888888888777777788888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----
Q 009011 276 WCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQ---- 351 (546)
Q Consensus 276 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~---- 351 (546)
+.+.|++++|+..++++.+..+. +...|..+...+.+.|++++|++.++.+.+.+.. +...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchh
Confidence 88888888888888888876544 6778888888888888888888888888876433 56667766666555554
Q ss_pred --HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhc---------
Q 009011 352 --INEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVV-PNVLTYNTMISSACAR--------- 419 (546)
Q Consensus 352 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~--------- 419 (546)
+++|++.+.+..+.. +.+...|+.+...+.. ...+++.+.++...+.... .+...+..++..|...
T Consensus 200 ~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~ 277 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 277 (315)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred hhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 567777777777664 3466667666555443 3456677777666543322 2344555555555332
Q ss_pred CCHHHHHHHHHHHHHC
Q 009011 420 SEEENALKLLQKMEED 435 (546)
Q Consensus 420 g~~~~A~~~~~~m~~~ 435 (546)
..+++|.++++.+.+.
T Consensus 278 ~~~~ka~~l~~~l~~~ 293 (315)
T d2h6fa1 278 DILNKALELCEILAKE 293 (315)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 2356777777766543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=2.9e-08 Score=92.89 Aligned_cols=227 Identities=9% Similarity=-0.019 Sum_probs=113.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHc----CCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHH
Q 009011 305 TCFIEHYCREKDFRKVDDTLKEMQEK----GCK--PS-VITYTIVMHALGKAKQINEALKVYEKMKSDD----CLPDTSF 373 (546)
Q Consensus 305 ~~li~~~~~~g~~~~a~~l~~~m~~~----g~~--p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~ 373 (546)
..+...+...|++..+...+...... +.. +. ...+..+...+...|+++.+...+....... .......
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 33444455555555555555444321 111 11 1233344455556666666666665554321 1122334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 009011 374 YSSLIFILSKAGRVKDANEIFEDMKKQ--GVVPN----VLTYNTMISSACARSEEENALKLLQKMEEDLCKPD---CETY 444 (546)
Q Consensus 374 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~ 444 (546)
+......+...++..++...+.+.... ..... ...+......+...|++++|...++...+.....+ ...+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 444455555666666666655544321 11111 12234444555666677777766666544321111 2334
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC----CH
Q 009011 445 APLLKMCCRKKRMKVLNFLLTHMFK----NDVSMD-AGTYASLVRGLIESGKLELACSFFEEMISK----GIVP----YH 511 (546)
Q Consensus 445 ~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p----~~ 511 (546)
..+..++...|++++|...++.+.. .+..|+ ...+..+...|.+.|++++|.+.+++..+. |... ..
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~ 334 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG 334 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHH
Confidence 4455666667777777776666543 222222 345566667777777777777777765542 3211 12
Q ss_pred HHHHHHHHHHHhcChhhHHH
Q 009011 512 STYKMLEEKLEKKRLGNAKE 531 (546)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~a~ 531 (546)
..+..++..+...+..++++
T Consensus 335 ~~~~~~~~~l~~~~~l~e~e 354 (366)
T d1hz4a_ 335 EAMAQQLRQLIQLNTLPELE 354 (366)
T ss_dssp HHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHhcCCChHHH
Confidence 23444555566666655554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.15 E-value=1.6e-08 Score=93.18 Aligned_cols=183 Identities=13% Similarity=0.085 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009011 353 NEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKM 432 (546)
Q Consensus 353 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 432 (546)
++|..+|++..+...+.+...+...+..+.+.|+++.|..+|+.+.+.........|...+..+.+.|+.+.|.++|+++
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44444555444433233344444444444455555555555555444322212234444444444555555555555554
Q ss_pred HHCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCC
Q 009011 433 EEDLCKPDCETYAPLLKM-CCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKG-IVPY 510 (546)
Q Consensus 433 ~~~~~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~ 510 (546)
.+.+ +.+...|...... +...|+.+.|..+|+.+.+..+. +...|..++..+.+.|+++.|..+|++.+... ..|+
T Consensus 161 l~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~ 238 (308)
T d2onda1 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 4432 1122222222211 22234455555555555443222 34445555555555555555555555544432 2221
Q ss_pred --HHHHHHHHHHHHhcChhhHHHHHHHHH
Q 009011 511 --HSTYKMLEEKLEKKRLGNAKERINKLL 537 (546)
Q Consensus 511 --~~~~~~l~~~~~~~g~~~~a~~~~~~m 537 (546)
...|...+..-...|+.+.+.++.+++
T Consensus 239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 239 KSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 233444444434445555555555444
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.12 E-value=2e-08 Score=92.52 Aligned_cols=83 Identities=8% Similarity=0.031 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHHcCChHHHH
Q 009011 420 SEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDV-SM--DAGTYASLVRGLIESGKLELAC 496 (546)
Q Consensus 420 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~ 496 (546)
|+.+.|..+|+.+.+.. +.+...+...+..+.+.|+.+.|..+|++..+... .| ....|...+..-...|+.+.+.
T Consensus 183 ~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~ 261 (308)
T d2onda1 183 KDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred cCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34444444444443331 22233344444444444444444444444433221 11 1233444444444444444444
Q ss_pred HHHHHHH
Q 009011 497 SFFEEMI 503 (546)
Q Consensus 497 ~~~~~m~ 503 (546)
++++++.
T Consensus 262 ~~~~r~~ 268 (308)
T d2onda1 262 KVEKRRF 268 (308)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=5.7e-08 Score=90.85 Aligned_cols=274 Identities=12% Similarity=0.042 Sum_probs=192.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHH
Q 009011 269 FNILIHGWCKTRKVDDAQKAMKEMFQQGFSPD----VVSYTCFIEHYCREKDFRKVDDTLKEMQEKGC-KPS----VITY 339 (546)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~----~~~~ 339 (546)
.......+...|++++|.+.+++..+.....+ ...+..+...|...|++++|...+++..+... .++ ...+
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 34445667788888888888888776533222 24566677788888999999888887765311 111 2345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHH
Q 009011 340 TIVMHALGKAKQINEALKVYEKMKS----DDCL--P-DTSFYSSLIFILSKAGRVKDANEIFEDMKKQG----VVPNVLT 408 (546)
Q Consensus 340 ~~li~~~~~~g~~~~a~~~~~~~~~----~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~ 408 (546)
..+...+...|++..+...+..... .+.. + ....+..+...+...|+++.+...+....... .......
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 5667788899999999998887653 2212 1 22355667788899999999999998887532 2223445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHH
Q 009011 409 YNTMISSACARSEEENALKLLQKMEED--LCKPD----CETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSM---DAGTY 479 (546)
Q Consensus 409 ~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~ 479 (546)
+......+...++...+...+.+.... ..... ...+..+...+...|+.+.|...++...+..... ....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 566667788889999999888776542 11111 2345556667889999999999999887643322 34556
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcChhhHHHHHHHHHHHHhh
Q 009011 480 ASLVRGLIESGKLELACSFFEEMISK----GIVPYH-STYKMLEEKLEKKRLGNAKERINKLLAHAKE 542 (546)
Q Consensus 480 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 542 (546)
..+...+...|++++|...++++... +..|+. ..+..+...+...|++++|.+.++...+...
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 67888999999999999999987642 444443 4566778889999999999999987655433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.04 E-value=1.5e-09 Score=101.55 Aligned_cols=231 Identities=9% Similarity=-0.035 Sum_probs=138.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHH
Q 009011 280 RKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREK--DFRKVDDTLKEMQEKGCKPSVITYT-IVMHALGKAKQINEAL 356 (546)
Q Consensus 280 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~a~~l~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~a~ 356 (546)
|++++|+.+++...+..++ +...|..+..++...+ ++++|...+..+.+.... +...+. .....+...+..++|+
T Consensus 87 ~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al 164 (334)
T d1dcea1 87 ALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEEL 164 (334)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHH
Confidence 3456666667666655433 5555655555555544 356777777776665322 344433 3335555667777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009011 357 KVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDL 436 (546)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 436 (546)
..++.+.+.+ +-+...|+.+...+.+.|++++|...+....+. .|+ ...+...+...+..+++...+.......
T Consensus 165 ~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~ 238 (334)
T d1dcea1 165 AFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR 238 (334)
T ss_dssp HHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC
Confidence 7777776665 346667777777777777776665444433321 011 1112233444566666777777666553
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHH
Q 009011 437 CKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHS-TYK 515 (546)
Q Consensus 437 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~ 515 (546)
+++...+..+...+...|+.++|...+.+..+.++. +..+|..+...+...|++++|.+.+++..+. .|+.. .|.
T Consensus 239 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~ 314 (334)
T d1dcea1 239 -AEPLFRCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLD 314 (334)
T ss_dssp -CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHH
T ss_pred -cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHH
Confidence 344445555666667777788888877777765443 5566777777888888888888888888764 36433 344
Q ss_pred HHHHHHH
Q 009011 516 MLEEKLE 522 (546)
Q Consensus 516 ~l~~~~~ 522 (546)
.+...+.
T Consensus 315 ~L~~~~~ 321 (334)
T d1dcea1 315 DLRSKFL 321 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.03 E-value=1.6e-09 Score=101.35 Aligned_cols=260 Identities=5% Similarity=-0.082 Sum_probs=140.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH----------hcCChHHHHHHHHHhhhCCCCCCHHH
Q 009011 165 NTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLV----------RGGRYDDAVEAFRGMKKYGVEKDTRA 234 (546)
Q Consensus 165 ~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~----------~~g~~~~A~~~~~~m~~~~~~~~~~~ 234 (546)
..++....+.+..++|+++++...+. .|.+...|+..-..+. ..|++++|+.+++...+.. +.+...
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~ 109 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGT 109 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHH
Confidence 34444444455557888888887763 4455555543332222 2233566777777665543 445555
Q ss_pred HHHHHHHHHccC--CHHHHHHHHHHhhcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009011 235 LSVLMDTLVKGN--SVEHAYKVFLEFKDCIPLSSQIFNI-LIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHY 311 (546)
Q Consensus 235 ~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 311 (546)
+..+..++...+ +.++|...+.+.....|.+...+.. ....+...|..++|...++.+....+. +...|+.+...+
T Consensus 110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~ 188 (334)
T d1dcea1 110 WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLL 188 (334)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 555555554443 3666666666666555555555443 335555666777777777666665443 566666666666
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009011 312 CREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDAN 391 (546)
Q Consensus 312 ~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 391 (546)
.+.|++++|...+....+. .|+ .......+...+..+++...+....... +++...+..+...+...|+.++|.
T Consensus 189 ~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~ 262 (334)
T d1dcea1 189 PQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESC 262 (334)
T ss_dssp HHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHH
Confidence 6666666554444332222 000 1112223344455555555555555443 233334444555555566666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 392 EIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEED 435 (546)
Q Consensus 392 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 435 (546)
..+.+..+... .+...|..+..++...|+.++|.+.+++..+.
T Consensus 263 ~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 263 KELQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 66665554321 13344555555666666666666666666654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=1.1e-08 Score=91.66 Aligned_cols=130 Identities=10% Similarity=-0.045 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 009011 198 ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWC 277 (546)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 277 (546)
.+|..+...|.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|.+.|++.....|.+..++..+..+|.
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHH
Confidence 355555666666666666666666666543 4455666666666666666666666666666555556666666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009011 278 KTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQE 329 (546)
Q Consensus 278 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 329 (546)
..|++++|...|++..+..+. +......+..++.+.+..+.+..+......
T Consensus 117 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 666666666666666554322 333333333333444444444444443333
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=1.1e-08 Score=91.45 Aligned_cols=216 Identities=9% Similarity=-0.089 Sum_probs=131.9
Q ss_pred hHHHHHHHHHhhhCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 213 YDDAVEAFRGMKKYGVEK---DTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAM 289 (546)
Q Consensus 213 ~~~A~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 289 (546)
.+.++.-+++........ ...++..+..+|.+.|++++|.+.|++.....|.++.+|+.+..+|.+.|++++|...|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 445556666665432111 23456667778888889999998888888777888888888888888899999999888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 009011 290 KEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLP 369 (546)
Q Consensus 290 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 369 (546)
++..+..+. +..++..+..+|...|++++|.+.++...+... .+......+..++.+.+..+....+..........+
T Consensus 95 ~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (259)
T d1xnfa_ 95 DSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ 172 (259)
T ss_dssp HHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred hHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh
Confidence 888876443 456777788888888888888888888877642 244444444445555555555555555555433221
Q ss_pred CHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 370 DTSFYSSLIFILSKAGR----VKDANEIFEDMKKQGVVP-NVLTYNTMISSACARSEEENALKLLQKMEED 435 (546)
Q Consensus 370 ~~~~~~~li~~~~~~g~----~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 435 (546)
. .++ ++..+..... .+.+...+...... .| ...+|..+...+...|++++|.+.|++....
T Consensus 173 ~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 173 W--GWN-IVEFYLGNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp T--HHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred h--hhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 1 111 2222221111 11121111111110 01 1234555666777777777777777777664
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=3.6e-06 Score=70.71 Aligned_cols=86 Identities=12% Similarity=0.081 Sum_probs=48.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 344 HALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEE 423 (546)
Q Consensus 344 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 423 (546)
..+...|+++.|++.|.++. +|+..++..+..+|...|++++|.+.|++..+... .+...|..+..++.+.|+++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhccHH
Confidence 33455566666666655431 34455555566666666666666666666655432 24455555566666666666
Q ss_pred HHHHHHHHHHH
Q 009011 424 NALKLLQKMEE 434 (546)
Q Consensus 424 ~A~~~~~~m~~ 434 (546)
+|++.|++...
T Consensus 88 ~A~~~~~kAl~ 98 (192)
T d1hh8a_ 88 LAIKDLKEALI 98 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=3.3e-06 Score=70.96 Aligned_cols=123 Identities=15% Similarity=0.047 Sum_probs=84.6
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 204 MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVD 283 (546)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 283 (546)
...+...|++++|++.|+++ .+|+..++..+..++...|++++|.+.|++..+..|.+...|..+..+|.+.|+++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHH
Confidence 34456778888888888764 25667777778888888888888888888877767777888888888888888888
Q ss_pred HHHHHHHHHHHCCCC--------------CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009011 284 DAQKAMKEMFQQGFS--------------PD-VVSYTCFIEHYCREKDFRKVDDTLKEMQEK 330 (546)
Q Consensus 284 ~a~~~~~~m~~~g~~--------------~~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 330 (546)
+|.+.|++....... .+ ..++..+..++.+.|++++|.+.+......
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 888888777643110 00 233444555666666666666666665554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.42 E-value=3.1e-06 Score=76.51 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=40.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhC---CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELN---NG-YVSLATMSTIMRRLVRGGRYDDAVEAFRGMK 224 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~---~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (546)
.|......|...|++++|.+.|.+..+.. .. .....+|..+...|.+.|++++|++.+++..
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~ 104 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhh
Confidence 35556677778888888888887765521 01 1123566777777777777777777776654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=5.4e-06 Score=63.21 Aligned_cols=100 Identities=13% Similarity=-0.075 Sum_probs=50.5
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCC
Q 009011 168 VDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNS 247 (546)
Q Consensus 168 l~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 247 (546)
...+.+.|++++|+..|++..+ . .|.+...|..+..+|.+.|++++|++.++...+.+ +.+...|..+..++...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~-~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIK-L-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHh-c-CCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 3444455555555555555554 2 34445555555555555555555555555554433 3444455555555555555
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHH
Q 009011 248 VEHAYKVFLEFKDCIPLSSQIFN 270 (546)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~ 270 (546)
+++|...|+......|.+...+.
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~ 109 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKE 109 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHH
Confidence 55555555555444444444333
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.39 E-value=6.5e-06 Score=74.35 Aligned_cols=165 Identities=11% Similarity=0.026 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHc----CCCC-CHH
Q 009011 269 FNILIHGWCKTRKVDDAQKAMKEMFQQ----GF-SPDVVSYTCFIEHYCR-EKDFRKVDDTLKEMQEK----GCKP-SVI 337 (546)
Q Consensus 269 ~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~~-~g~~~~a~~l~~~m~~~----g~~p-~~~ 337 (546)
|+.+..+|.+.|++++|...+++..+. |. .....++..+...|.. .|++++|.+.+++..+. +..+ -..
T Consensus 80 ~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~ 159 (290)
T d1qqea_ 80 YVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK 159 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhh
Confidence 444444455555555555544443321 10 0012233344444433 46666666666554421 1111 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC---HH
Q 009011 338 TYTIVMHALGKAKQINEALKVYEKMKSDDCLP-----D-TSFYSSLIFILSKAGRVKDANEIFEDMKKQGVV-PN---VL 407 (546)
Q Consensus 338 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-----~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~---~~ 407 (546)
++..+...+.+.|++++|...|+++....... . ...+...+.++...|+++.|...+++..+.... ++ ..
T Consensus 160 ~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~ 239 (290)
T d1qqea_ 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESN 239 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HH
T ss_pred HHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHH
Confidence 45556666667777777777776665542111 1 112233444555667777777777766543211 11 12
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 009011 408 TYNTMISSACA--RSEEENALKLLQKME 433 (546)
Q Consensus 408 ~~~~li~~~~~--~g~~~~A~~~~~~m~ 433 (546)
....++.++-. .+.+++|+..|+.+.
T Consensus 240 ~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 240 FLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 33445555443 234666666665443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=8.8e-06 Score=61.98 Aligned_cols=91 Identities=14% Similarity=0.128 Sum_probs=57.1
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 204 MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVD 283 (546)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 283 (546)
...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...+.......|.+...|..+..++...|+++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 445556666666666666665543 4555566666666666666666666666665555566666666666666666666
Q ss_pred HHHHHHHHHHHC
Q 009011 284 DAQKAMKEMFQQ 295 (546)
Q Consensus 284 ~a~~~~~~m~~~ 295 (546)
+|...|++..+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 666666666654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=9.4e-06 Score=65.78 Aligned_cols=91 Identities=5% Similarity=-0.040 Sum_probs=55.1
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 204 MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVD 283 (546)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 283 (546)
...|.+.|++++|+..|++..+.. +.+...|..+..++...|++++|.+.|++..+..|.+..+|..+..++...|+++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 344556666666666666665543 4455555666666666666666666666655555556666666666666666666
Q ss_pred HHHHHHHHHHHC
Q 009011 284 DAQKAMKEMFQQ 295 (546)
Q Consensus 284 ~a~~~~~~m~~~ 295 (546)
+|...+++....
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 666666666554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=8.9e-06 Score=65.93 Aligned_cols=108 Identities=9% Similarity=-0.049 Sum_probs=94.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 009011 165 NTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVK 244 (546)
Q Consensus 165 ~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 244 (546)
......|.+.|++++|...|++..+ - .+.+...|..+...|...|++++|++.|++..+.. +.+..+|..+..++..
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIE-L-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-H-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccc-c-chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHH
Confidence 4556778899999999999999998 3 67789999999999999999999999999998865 6678899999999999
Q ss_pred cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 009011 245 GNSVEHAYKVFLEFKDCIPLSSQIFNILIHG 275 (546)
Q Consensus 245 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 275 (546)
.|++++|...+++.....|.+...+..+..+
T Consensus 91 ~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~ 121 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVKPHDKDAKMKYQEC 121 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 9999999999999988777777776665444
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.30 E-value=0.0011 Score=59.73 Aligned_cols=129 Identities=14% Similarity=0.090 Sum_probs=60.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 009011 201 STIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTR 280 (546)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 280 (546)
..+...|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+.+.+.. +..+|..+...+.+..
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~-----~~~~~k~~~~~l~~~~ 83 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN-----STRTWKEVCFACVDGK 83 (336)
T ss_dssp -----------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT-----CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC-----CHHHHHHHHHHHHhCc
Confidence 3445555566666666666665532 3445555566666666655554332 4445555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009011 281 KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKA 349 (546)
Q Consensus 281 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~ 349 (546)
...-+ .+.......+......++..|-..|.+++...+++..... -..+...++-++..|++.
T Consensus 84 e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 84 EFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp CHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred HHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 44332 1222222234444445566666666666666666655432 233444555566655554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.23 E-value=1.1e-05 Score=68.16 Aligned_cols=95 Identities=13% Similarity=0.035 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 009011 198 ATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWC 277 (546)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 277 (546)
..+......|.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|...|+....-.|.+..+|..+..+|.
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~ 83 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 333344445555555555555555544432 3444445555555555555555555555554444445555555555555
Q ss_pred hcCCHHHHHHHHHHHH
Q 009011 278 KTRKVDDAQKAMKEMF 293 (546)
Q Consensus 278 ~~g~~~~a~~~~~~m~ 293 (546)
+.|++++|...|++..
T Consensus 84 ~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 84 EMESYDEAIANLQRAY 99 (201)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5555555555555443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.21 E-value=0.0015 Score=57.27 Aligned_cols=223 Identities=15% Similarity=0.034 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 009011 266 SQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCR----EKDFRKVDDTLKEMQEKGCKPSVITYTI 341 (546)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~~~~~ 341 (546)
+..+..|...+.+.|++++|.+.|++..+.| +...+..|-..|.. ..+...+...+......+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 3445555556666666777777777666654 44444445555544 445666666666666554 2223333
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009011 342 VMHALGK----AKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSK----AGRVKDANEIFEDMKKQGVVPNVLTYNTMI 413 (546)
Q Consensus 342 li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 413 (546)
+...+.. ..+.+.|...++...+.|. ......+...+.. ......+...+...... .+...+..+.
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~ 149 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILG 149 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhh
Confidence 3333322 3456667777776666552 2222222222222 33455566666655553 3555566666
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 009011 414 SSACA----RSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCR----KKRMKVLNFLLTHMFKNDVSMDAGTYASLVRG 485 (546)
Q Consensus 414 ~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 485 (546)
..+.. ..+...+..+++...+.| +......+...+.. ..+.+.|..+|....+.| +...+..|...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~ 223 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 223 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHH
Confidence 65554 345666666666666644 44444444444443 456777777777777665 34555555555
Q ss_pred HHH----cCChHHHHHHHHHHHHCC
Q 009011 486 LIE----SGKLELACSFFEEMISKG 506 (546)
Q Consensus 486 ~~~----~g~~~~A~~~~~~m~~~g 506 (546)
|.+ ..+.++|.++|++..+.|
T Consensus 224 y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 224 QYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCCccCHHHHHHHHHHHHHCc
Confidence 553 236677777777777666
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.20 E-value=1.1e-05 Score=68.21 Aligned_cols=99 Identities=10% Similarity=0.050 Sum_probs=68.2
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009011 230 KDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIE 309 (546)
Q Consensus 230 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 309 (546)
|+...+......+.+.|++++|...|.+.....|.+..+|+.+..+|.+.|++++|...|++..+..+. +..+|..+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHHH
Confidence 555556666667777777777777777766666677777777777777777777777777777655332 4566666777
Q ss_pred HHHhcCChhHHHHHHHHHHH
Q 009011 310 HYCREKDFRKVDDTLKEMQE 329 (546)
Q Consensus 310 ~~~~~g~~~~a~~l~~~m~~ 329 (546)
+|.+.|++++|+..|++..+
T Consensus 81 ~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777766554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.15 E-value=9.8e-06 Score=61.15 Aligned_cols=88 Identities=11% Similarity=0.043 Sum_probs=49.2
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHH
Q 009011 204 MRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVD 283 (546)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 283 (546)
...+.+.|++++|+..|++..+.. +-+..+|..+..++.+.|++++|...|++..+..|.+..++..+...|...|+++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~ 101 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 101 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHH
Confidence 334455555555555555555432 3345555555555555555555555555555555555555666666666666666
Q ss_pred HHHHHHHHH
Q 009011 284 DAQKAMKEM 292 (546)
Q Consensus 284 ~a~~~~~~m 292 (546)
+|.+.+++.
T Consensus 102 ~A~~~l~~~ 110 (112)
T d1hxia_ 102 AALASLRAW 110 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.11 E-value=0.0023 Score=57.67 Aligned_cols=292 Identities=15% Similarity=0.122 Sum_probs=161.4
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHH
Q 009011 159 HTPEMYNTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVL 238 (546)
Q Consensus 159 ~~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 238 (546)
++..--..+.+.|-+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+. .+..+|..+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d----------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~ 75 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 75 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC----------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC----------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHH
Confidence 3444445677888899999999999987754 666788889999999999988764 356688888
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009011 239 MDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFR 318 (546)
Q Consensus 239 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 318 (546)
...+.+......+.-+ ......+......++..|-..|.+++...+++..... -..+...++.++..|++.+ .+
T Consensus 76 ~~~l~~~~e~~la~i~----~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~ 149 (336)
T d1b89a_ 76 CFACVDGKEFRLAQMC----GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQ 149 (336)
T ss_dssp HHHHHHTTCHHHHHHT----TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HH
T ss_pred HHHHHhCcHHHHHHHH----HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hH
Confidence 8888887766544221 1123346666778999999999999999999987643 2457778889999998864 33
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 319 KVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMK 398 (546)
Q Consensus 319 ~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 398 (546)
+ +.+.+...+..-| ...++..|-+.+-++++.-++..+... + +++...+....+..++..+.+-..
T Consensus 150 k---l~e~l~~~s~~y~---~~k~~~~c~~~~l~~elv~Ly~~~~~~----~----~A~~~~i~~~~~~~~~~~f~e~~~ 215 (336)
T d1b89a_ 150 K---MREHLELFWSRVN---IPKVLRAAEQAHLWAELVFLYDKYEEY----D----NAIITMMNHPTDAWKEGQFKDIIT 215 (336)
T ss_dssp H---HHHHHHHHSTTSC---HHHHHHHHHTTTCHHHHHHHHHHTTCH----H----HHHHHHHHSTTTTCCHHHHHHHHH
T ss_pred H---HHHHHHhccccCC---HHHHHHHHHHcCChHHHHHHHHhcCCH----H----HHHHHHHHcchhhhhHHHHHHHHH
Confidence 3 4444443222222 234556677777766666666554321 1 111111111111111122222222
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 009011 399 KQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGT 478 (546)
Q Consensus 399 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 478 (546)
+. .|+..|-..+..|... +++-...++..+... .|. ..++..+-+.+++.....+++.....+ +..+
T Consensus 216 k~---~N~e~~~~~i~~yL~~-~p~~i~~lL~~v~~~---~d~---~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~v 282 (336)
T d1b89a_ 216 KV---ANVELYYRAIQFYLEF-KPLLLNDLLMVLSPR---LDH---TRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSV 282 (336)
T ss_dssp HC---SSTHHHHHHHHHHHHH-CGGGHHHHHHHHGGG---CCH---HHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHH
T ss_pred cc---CChHHHHHHHHHHHHc-CHHHHHHHHHHhccC---CCH---HHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHH
Confidence 21 1333344444444332 233333333333221 111 234444555666666667776666544 4568
Q ss_pred HHHHHHHHHHcCChHHHHHHH
Q 009011 479 YASLVRGLIESGKLELACSFF 499 (546)
Q Consensus 479 ~~~li~~~~~~g~~~~A~~~~ 499 (546)
.+++...|...++++.-.+..
T Consensus 283 n~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 283 NESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCcchhHHHHHHH
Confidence 888888898888875543333
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.07 E-value=0.0029 Score=55.29 Aligned_cols=226 Identities=10% Similarity=-0.042 Sum_probs=162.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 009011 300 DVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGK----AKQINEALKVYEKMKSDDCLPDTSFYS 375 (546)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 375 (546)
|+..+..|-..+.+.+++++|++.|++..+.| +...+..|...|.. ..+...|...+....+.+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34566677777888999999999999998887 56666667777766 568999999999988876 344444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009011 376 SLIFILSK----AGRVKDANEIFEDMKKQGVVPNVLTYNTMISSAC----ARSEEENALKLLQKMEEDLCKPDCETYAPL 447 (546)
Q Consensus 376 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 447 (546)
.+...+.. ..+.+.|...++...+.|. ......+...+. .......+...+...... .+...+..+
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhh
Confidence 45444443 4678899999999887653 233333333333 245677888888877664 466677777
Q ss_pred HHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009011 448 LKMCCR----KKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIE----SGKLELACSFFEEMISKGIVPYHSTYKMLEE 519 (546)
Q Consensus 448 l~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 519 (546)
...+.. ..+...+...++...+.| +......+...|.. ..++++|..+|+...+.| +...+..|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 777775 456778888888887765 56666666666665 568999999999999988 4556666666
Q ss_pred HHHh----cChhhHHHHHHHHHHHHhhh
Q 009011 520 KLEK----KRLGNAKERINKLLAHAKEQ 543 (546)
Q Consensus 520 ~~~~----~g~~~~a~~~~~~m~~~~~~ 543 (546)
.|.. ..+.+.|.+++++....+.+
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 6655 34788899999988766543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.02 E-value=1.9e-05 Score=59.46 Aligned_cols=87 Identities=13% Similarity=0.016 Sum_probs=49.1
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009011 240 DTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRK 319 (546)
Q Consensus 240 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 319 (546)
..+.+.|++++|...|++.....|.+..+|..+..++.+.|++++|+..|++..+..+. +...|..+...|...|++++
T Consensus 24 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 24 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANA 102 (112)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCHHH
Confidence 34455566666666665555555555556666666666666666666666655554332 45555555555555566666
Q ss_pred HHHHHHHH
Q 009011 320 VDDTLKEM 327 (546)
Q Consensus 320 a~~l~~~m 327 (546)
|.+.+++.
T Consensus 103 A~~~l~~~ 110 (112)
T d1hxia_ 103 ALASLRAW 110 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=3e-05 Score=59.21 Aligned_cols=99 Identities=11% Similarity=0.052 Sum_probs=55.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 009011 411 TMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKR---MKVLNFLLTHMFKNDVSMD-AGTYASLVRGL 486 (546)
Q Consensus 411 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~ 486 (546)
.+++.+...+++++|.+.|++....+ +.+..++..+..++.+.++ .++|..+++++.+.+..|+ ..+|..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 34555555566666666666666554 4455555555555554333 3346666666655443333 23555566666
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHH
Q 009011 487 IESGKLELACSFFEEMISKGIVPYHS 512 (546)
Q Consensus 487 ~~~g~~~~A~~~~~~m~~~g~~p~~~ 512 (546)
.+.|++++|.+.|+++++. .|+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~--~P~~~ 106 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT--EPQNN 106 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHhhhHHHHHHHHHHHHh--CcCCH
Confidence 6666666666666666653 35543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=3.3e-05 Score=58.99 Aligned_cols=92 Identities=14% Similarity=0.112 Sum_probs=41.4
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 009011 238 LMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRK---VDDAQKAMKEMFQQGFSPD-VVSYTCFIEHYCR 313 (546)
Q Consensus 238 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~ 313 (546)
++..+...+++++|++.|+......|.+..++..+..++.+.++ +++|..+++++......|+ ..+|..+..+|.+
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~ 84 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 84 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 33444444444555555544444444444444444444444332 2234444544444322222 1234444445555
Q ss_pred cCChhHHHHHHHHHHH
Q 009011 314 EKDFRKVDDTLKEMQE 329 (546)
Q Consensus 314 ~g~~~~a~~l~~~m~~ 329 (546)
.|++++|.+.|+++.+
T Consensus 85 ~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 85 LKEYEKALKYVRGLLQ 100 (122)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHH
Confidence 5555555555555544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=0.00038 Score=56.53 Aligned_cols=75 Identities=11% Similarity=0.041 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 009011 443 TYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPY-HSTYKMLEEK 520 (546)
Q Consensus 443 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~ 520 (546)
+|..+..+|.+.|++++|...++..++.++. +...|..+..+|...|++++|...|++..+.. |+ ......+...
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 5666777888899999999999988887655 78888888999999999999999999988654 53 4444444333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=0.00032 Score=57.01 Aligned_cols=61 Identities=8% Similarity=-0.078 Sum_probs=36.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 235 LSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 235 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
|+.+..+|.+.|++++|...++......|.++.++..+..+|...|++++|...|+...+.
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4445555556666666666665555555556666666666666666666666666666554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.73 E-value=0.00027 Score=57.37 Aligned_cols=125 Identities=12% Similarity=0.067 Sum_probs=70.3
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHc
Q 009011 165 NTMVDVLGKSKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVK 244 (546)
Q Consensus 165 ~~ll~~~~~~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 244 (546)
......+.+.|+++.|++.|.++.+.. ..........+.. .. -+.....+..+..++.+
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~-------------~~~~~~~~~~~~~-------~~-~~~~~~~~~nla~~~~~ 89 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYV-------------EGSRAAAEDADGA-------KL-QPVALSCVLNIGACKLK 89 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-------------HHHHHHSCHHHHG-------GG-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh-------------hhhhhhhhhHHHH-------Hh-ChhhHHHHHHHHHHHHh
Confidence 455666778888988888887765411 0000000000000 00 01233445556666666
Q ss_pred cCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009011 245 GNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHY 311 (546)
Q Consensus 245 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 311 (546)
.|++++|...++...+..|.+..+|..+..+|.+.|++++|...|++..+..+. +......+..+.
T Consensus 90 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~ 155 (169)
T d1ihga1 90 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVK 155 (169)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 777777777776666666666667777777777777777777777776665332 444444444443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.66 E-value=0.00055 Score=55.44 Aligned_cols=109 Identities=9% Similarity=-0.088 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009011 163 MYNTMVDVLGKSKKFCLMWELVKEMDELNNG--YVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMD 240 (546)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 240 (546)
.+......+.+.|++++|...|++....... ..+... ....+.+ ....|..+..
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~-----------------~~~~~~~-------~~~~~~Nla~ 72 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKE-----------------SKASESF-------LLAAFLNLAM 72 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHH-----------------HHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhh-----------------hhhcchh-------HHHHHHhHHH
Confidence 3455677788889999998888776542101 111100 0000000 0123334444
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 241 TLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 241 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
++.+.|++++|...++......|.+...|..+..++...|++++|...|++....
T Consensus 73 ~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 73 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4555555555555555555444555555555555555555555555555555544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=1.4e-05 Score=78.15 Aligned_cols=111 Identities=12% Similarity=-0.020 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 338 TYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSAC 417 (546)
Q Consensus 338 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 417 (546)
.+..+...+.+.|+.+.|...+....... ...++..+...+...|++++|...|++..+... -+...|+.+...+.
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P-~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLAILAS 197 (497)
T ss_dssp ---------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 34444455555555555555554443321 123444555556666666666666666655432 23456666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009011 418 ARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCR 453 (546)
Q Consensus 418 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 453 (546)
..|+..+|...|.+..... +|...++..|...+.+
T Consensus 198 ~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 6666666666666665543 4555555555555443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.63 E-value=0.0013 Score=52.09 Aligned_cols=62 Identities=8% Similarity=-0.053 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 009011 268 IFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEK 330 (546)
Q Consensus 268 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 330 (546)
+|+.+..+|.+.|++++|++.+++..+..+. +..+|..+..++...|++++|...|+...+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455555555666666666666555554322 4555555555666666666666666555554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=0.00051 Score=52.67 Aligned_cols=92 Identities=15% Similarity=0.141 Sum_probs=47.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC-----HHHHHHHHHH
Q 009011 412 MISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVS-MD-----AGTYASLVRG 485 (546)
Q Consensus 412 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~-----~~~~~~li~~ 485 (546)
+...+...|++++|+..|.+.++.+ +.+...+..+..+|.+.|+++.|...++++.+.... +. ..+|..+...
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555442 233445555555555555555555555554441110 00 1345555566
Q ss_pred HHHcCChHHHHHHHHHHHH
Q 009011 486 LIESGKLELACSFFEEMIS 504 (546)
Q Consensus 486 ~~~~g~~~~A~~~~~~m~~ 504 (546)
+...+++++|.+.|++...
T Consensus 89 ~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 6666777777777766654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.59 E-value=0.0013 Score=52.02 Aligned_cols=63 Identities=8% Similarity=-0.110 Sum_probs=46.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009011 234 ALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQG 296 (546)
Q Consensus 234 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 296 (546)
+|..+..+|.+.|++++|.+.++......|.+..+|..+..++...|++++|...|++..+..
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 556666677777777777777777766667777777777777777777777777777777654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.58 E-value=0.00058 Score=55.36 Aligned_cols=130 Identities=12% Similarity=0.058 Sum_probs=91.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCC
Q 009011 202 TIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRK 281 (546)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 281 (546)
.....+.+.|++++|++.|.+..+. ............ .....+.....|+.+..++.+.|+
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~-------~~~~~~~~~~~~~nla~~~~~~~~ 92 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDAD-------GAKLQPVALSCVLNIGACKLKMSD 92 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHH-------HGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHH-------HHHhChhhHHHHHHHHHHHHhhcc
Confidence 3456677889999999999887531 000000111111 111123456678889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 009011 282 VDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQI 352 (546)
Q Consensus 282 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 352 (546)
+++|+..+++.++..+. +..+|..+..+|...|++++|...|+...+... .+......+..+..+....
T Consensus 93 ~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p-~n~~~~~~l~~~~~~l~~~ 161 (169)
T d1ihga1 93 WQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQ 161 (169)
T ss_dssp HHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHH
Confidence 99999999999987654 788999999999999999999999999998743 2566666665554443333
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.57 E-value=0.0012 Score=53.89 Aligned_cols=124 Identities=11% Similarity=0.023 Sum_probs=84.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009011 378 IFILSKAGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRM 457 (546)
Q Consensus 378 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 457 (546)
.......|++++|.+.|.+....- ++... ......+.+...-..+... ....+..+..++...|++
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCc
Confidence 345677888888888888887631 11100 0000101111111111111 224567788889999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 009011 458 KVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMIS-----KGIVPYHSTYKM 516 (546)
Q Consensus 458 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 516 (546)
++|...++.+.+..+. +...|..++.+|.+.|+.++|++.|+++.. .|+.|...+-..
T Consensus 84 ~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l 146 (179)
T d2ff4a2 84 SAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 146 (179)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred hHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 9999999999997765 889999999999999999999999998743 499999876443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=0.00079 Score=51.55 Aligned_cols=55 Identities=9% Similarity=0.083 Sum_probs=25.9
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 239 MDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMF 293 (546)
Q Consensus 239 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 293 (546)
...+...|++++|.+.|.+..+..|.+..++..+..+|.+.|++++|...+++++
T Consensus 11 G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 3344444444444444444444344444444445555555555555555544443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.54 E-value=0.00075 Score=55.12 Aligned_cols=71 Identities=7% Similarity=0.016 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCCHHH
Q 009011 267 QIFNILIHGWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQE-----KGCKPSVIT 338 (546)
Q Consensus 267 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~g~~p~~~~ 338 (546)
..+..+...+.+.|++++|...++++....+. +...|..++.+|.+.|+.++|++.|+++.+ .|+.|+..+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 34555666666666666666666666655432 556666666666666666666666666532 366666544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.47 E-value=0.001 Score=53.75 Aligned_cols=140 Identities=15% Similarity=0.129 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhC---CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 009011 198 ATMSTIMRRLVRGGRYDDAVEAFRGMKKY---GVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIH 274 (546)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~ 274 (546)
..+......+.+.|++.+|+..|++.... ....+. +. ...... ....+|+.+..
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~----------------~~-~~~~~~------~~~~~~~Nla~ 72 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSE----------------KE-SKASES------FLLAAFLNLAM 72 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH----------------HH-HHHHHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccch----------------hh-hhhcch------hHHHHHHhHHH
Confidence 34445567788899999999999886531 111111 00 011111 12346778899
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-
Q 009011 275 GWCKTRKVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQIN- 353 (546)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~- 353 (546)
+|.+.|++++|+..+++.....+. +..+|..+..+|...|++++|...|+.+.... +.+......+-....+.+...
T Consensus 73 ~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~~~~e 150 (168)
T d1kt1a1 73 CYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAKEHNE 150 (168)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999987543 78899999999999999999999999999864 235555555544444444332
Q ss_pred HHHHHHHHH
Q 009011 354 EALKVYEKM 362 (546)
Q Consensus 354 ~a~~~~~~~ 362 (546)
...++|..|
T Consensus 151 ~~kk~~~~~ 159 (168)
T d1kt1a1 151 RDRRTYANM 159 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=5.1e-05 Score=73.96 Aligned_cols=167 Identities=13% Similarity=0.037 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009011 317 FRKVDDTLKEMQEKGCKPSVITYTIVMHA--LGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIF 394 (546)
Q Consensus 317 ~~~a~~l~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 394 (546)
+..+.+.++...+....++..-....+.. ....+.++.++..+....+.. +++...+..+...+.+.|+.++|...+
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~ 143 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQ 143 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------C
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHH
Confidence 34455556555544333332222211111 122344555555444433332 235566777788888999999998887
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 009011 395 EDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSM 474 (546)
Q Consensus 395 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 474 (546)
....... ...++..+...+...|++++|...|++..+.. +-+...|+.+...+...|+..+|...|.+...... |
T Consensus 144 ~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~-~ 218 (497)
T d1ya0a1 144 SSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF-P 218 (497)
T ss_dssp CHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB-C
T ss_pred HHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-C
Confidence 7665421 13467778888999999999999999998874 44568999999999999999999999999887653 4
Q ss_pred CHHHHHHHHHHHHHc
Q 009011 475 DAGTYASLVRGLIES 489 (546)
Q Consensus 475 ~~~~~~~li~~~~~~ 489 (546)
-..++..|...+.+.
T Consensus 219 ~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 219 FPAASTNLQKALSKA 233 (497)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 667777777666543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.43 E-value=0.0001 Score=64.61 Aligned_cols=50 Identities=18% Similarity=0.137 Sum_probs=22.6
Q ss_pred CCChHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 009011 174 SKKFCLMWELVKEMDELNNGYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKK 225 (546)
Q Consensus 174 ~~~~~~a~~l~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (546)
.|++++|+..+++..+ . .|.+...+..+...++..|++++|++.|+...+
T Consensus 9 ~G~l~eAl~~l~~al~-~-~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 9 EGQLQQALELLIEAIK-A-SPKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTCHHHHHHHHHHHHH-T-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-H-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444444444444 2 344444444444444444444444444444433
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.37 E-value=0.00013 Score=64.07 Aligned_cols=52 Identities=12% Similarity=0.250 Sum_probs=32.4
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009011 244 KGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQKAMKEMFQQ 295 (546)
Q Consensus 244 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 295 (546)
+.|++++|...+++..+..|.+...+..+...++..|++++|.+.++...+.
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4566666666666665556666666666666666666666666666666554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.28 E-value=0.00059 Score=53.61 Aligned_cols=68 Identities=12% Similarity=0.047 Sum_probs=32.8
Q ss_pred ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHcc----------CCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC
Q 009011 212 RYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKG----------NSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTR 280 (546)
Q Consensus 212 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 280 (546)
.+++|++.|+...+.. +.+..++..+..++... +.+++|...|++..+..|.+..+|+.+..+|...|
T Consensus 12 ~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g 89 (145)
T d1zu2a1 12 LFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 89 (145)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcc
Confidence 3444444444444432 33344444444333322 22345555555555555566666666666555443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.10 E-value=0.0013 Score=51.56 Aligned_cols=71 Identities=10% Similarity=-0.049 Sum_probs=46.9
Q ss_pred HccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009011 243 VKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTR----------KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYC 312 (546)
Q Consensus 243 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 312 (546)
-+.+.+++|.+.|+...+..|.+..++..+..++...+ .+++|...|++..+..+. +..+|..+..+|.
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHHH
Confidence 34556788888888887777888888888887776543 345666666666655433 4555655555554
Q ss_pred hc
Q 009011 313 RE 314 (546)
Q Consensus 313 ~~ 314 (546)
..
T Consensus 87 ~~ 88 (145)
T d1zu2a1 87 SF 88 (145)
T ss_dssp HH
T ss_pred Hc
Confidence 43
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.79 E-value=0.017 Score=45.43 Aligned_cols=63 Identities=13% Similarity=0.033 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009011 442 ETYAPLLKMCCRKKRMKVLNFLLTHMFKN-----DVSMD-----AGTYASLVRGLIESGKLELACSFFEEMIS 504 (546)
Q Consensus 442 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 504 (546)
.+|+.+..+|...|++++|...+++..+. ...++ ...|..+..+|...|++++|+..|++..+
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666555431 11111 22466677888889999999998888764
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.55 E-value=0.026 Score=44.29 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 009011 374 YSSLIFILSKAGRVKDANEIFEDMK 398 (546)
Q Consensus 374 ~~~li~~~~~~g~~~~A~~~~~~~~ 398 (546)
++.+..+|...|++++|.+.|++..
T Consensus 103 ~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 103 VYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.39 E-value=0.016 Score=41.09 Aligned_cols=72 Identities=8% Similarity=-0.013 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhCC-----CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHH
Q 009011 199 TMSTIMRRLVRGGRYDDAVEAFRGMKKYG-----VEKD-TRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFN 270 (546)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 270 (546)
.+..+...+.+.|++++|+..|++..+.. ..++ ..++..+..++.+.|++++|...++++.+-.|.+..+++
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 33344555555555555555555543210 0111 334444555555555555555555554444444444433
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.14 E-value=0.022 Score=40.30 Aligned_cols=78 Identities=12% Similarity=0.043 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhhCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCHHH
Q 009011 160 TPEMYNTMVDVLGKSKKFCLMWELVKEMDELNN-----GYVSLATMSTIMRRLVRGGRYDDAVEAFRGMKKYGVEKDTRA 234 (546)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 234 (546)
+.+.+-.+...+.+.|+++.|...|++..+..+ ......+++.+..++.+.|++++|++.++++.+.. +-+..+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a 82 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRA 82 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHH
Confidence 344455788899999999999999998865421 11225789999999999999999999999998764 444555
Q ss_pred HHHH
Q 009011 235 LSVL 238 (546)
Q Consensus 235 ~~~l 238 (546)
++.+
T Consensus 83 ~~Nl 86 (95)
T d1tjca_ 83 NGNL 86 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.06 E-value=0.16 Score=37.00 Aligned_cols=66 Identities=12% Similarity=0.141 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009011 337 ITYTIVMHALGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDANEIFEDMKKQGVV 403 (546)
Q Consensus 337 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 403 (546)
..+...++.+.+.|.-++-.+++..+.+.+ ++++...-.+..+|.+.|...++.+++.+.-+.|++
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 345556677777788888888887776644 667777777888888888888888888887777654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.68 E-value=0.21 Score=37.47 Aligned_cols=80 Identities=10% Similarity=-0.037 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCH
Q 009011 351 QINEALKVYEKMKSDDCLPDTSFYSSLIFILSK----AGRVKDANEIFEDMKKQGVVPNVLTYNTMISSACA----RSEE 422 (546)
Q Consensus 351 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~ 422 (546)
+.++|.+++++..+.| +......|...|.. ..+.++|.++|+...+.| ++.....|...|.. ..+.
T Consensus 38 ~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~ 111 (133)
T d1klxa_ 38 NKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNE 111 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCH
Confidence 4455555555555444 22333333333332 223455555555554443 22333333333332 2344
Q ss_pred HHHHHHHHHHHHCC
Q 009011 423 ENALKLLQKMEEDL 436 (546)
Q Consensus 423 ~~A~~~~~~m~~~~ 436 (546)
++|.++|++..+.|
T Consensus 112 ~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 112 KQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC
Confidence 55555555544443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.48 E-value=0.28 Score=36.71 Aligned_cols=110 Identities=15% Similarity=0.060 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 009011 281 KVDDAQKAMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGK----AKQINEAL 356 (546)
Q Consensus 281 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~ 356 (546)
++++|.+.|++..+.|.. ..+..|. .....+.++|.+++++..+.| +...+..+...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 456677777776665422 2222222 223456777777777777766 44455555555543 34678888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 009011 357 KVYEKMKSDDCLPDTSFYSSLIFILSK----AGRVKDANEIFEDMKKQG 401 (546)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~ 401 (546)
++|++..+.| +......|...|.. ..+.++|.++|+...+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 8888888776 34445555555554 346778888888777765
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.68 E-value=0.5 Score=34.28 Aligned_cols=140 Identities=10% Similarity=0.077 Sum_probs=76.3
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009011 208 VRGGRYDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILIHGWCKTRKVDDAQK 287 (546)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 287 (546)
.-.|..++..+++.+... ..+..-||-++.-....-+-+...+.++.+-+.+..+ .++++.....
T Consensus 13 ildG~ve~Gveii~k~~~---ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls------------~C~Nlk~vv~ 77 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD------------KCQNLKSVVE 77 (161)
T ss_dssp HHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG------------GCSCTHHHHH
T ss_pred HHhhhHHhHHHHHHHHcc---cCCccccceeeeecccccchHHHHHHHHHHhhhcCch------------hhhcHHHHHH
Confidence 334566666666666654 2334445555544444445555555555554322211 2223222222
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009011 288 AMKEMFQQGFSPDVVSYTCFIEHYCREKDFRKVDDTLKEMQEKGCKPSVITYTIVMHALGKAKQINEALKVYEKMKSDDC 367 (546)
Q Consensus 288 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 367 (546)
.+-.+- -+....+..++.....|+-++..++++.+.+. -++++...-.+..+|.+.|...++.+++.+.-+.|.
T Consensus 78 C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 78 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 222211 12333445566667777777777777776664 355666667777777778887777777777777764
Q ss_pred C
Q 009011 368 L 368 (546)
Q Consensus 368 ~ 368 (546)
.
T Consensus 152 K 152 (161)
T d1wy6a1 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.29 E-value=5.3 Score=36.55 Aligned_cols=82 Identities=11% Similarity=0.028 Sum_probs=42.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 009011 419 RSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSF 498 (546)
Q Consensus 419 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 498 (546)
.+..+.+..++......+ .+.....-.+......+++..+...+..|...... ...-.--+..++...|+.++|...
T Consensus 265 ~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~-~~r~~YW~gRa~~~~G~~~~A~~~ 341 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEI 341 (450)
T ss_dssp TTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCccccc-HHHHHHHHHHHHHHcCChhhHHHH
Confidence 344555655555554432 23333333444445556666666666655432111 233333445566666666666666
Q ss_pred HHHHH
Q 009011 499 FEEMI 503 (546)
Q Consensus 499 ~~~m~ 503 (546)
|....
T Consensus 342 ~~~~a 346 (450)
T d1qsaa1 342 LHQLM 346 (450)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66664
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.15 E-value=1.6 Score=31.65 Aligned_cols=72 Identities=11% Similarity=0.095 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 009011 439 PDCETYAPLLKMCCRKK---RMKVLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISKGIVPYHS 512 (546)
Q Consensus 439 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 512 (546)
|...|--....++++.. +.+++..+++++.+.+..-....+-.+..+|.+.|++++|.+.++.+++. .|+..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n~ 107 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 107 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCcH
Confidence 44444333444444433 34566677776665433212345566666777777777777777777743 35543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=89.48 E-value=7.6 Score=35.44 Aligned_cols=204 Identities=12% Similarity=0.011 Sum_probs=115.1
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009011 315 KDFRKVDDTLKEMQEKGCKPSVITYTIVMHA----LGKAKQINEALKVYEKMKSDDCLPDTSFYSSLIFILSKAGRVKDA 390 (546)
Q Consensus 315 g~~~~a~~l~~~m~~~g~~p~~~~~~~li~~----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 390 (546)
.+.+.+..++......... +......+-.. ....+..+.+..++......+ .+.......+......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHH
Confidence 5677777777777655322 22222222222 223456677777777666654 2444444455555667888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009011 391 NEIFEDMKKQGVVPNVLTYNTMISSACARSEEENALKLLQKMEEDLCKPDCETYAPLLKMCCRKKRMKVLNFLLTHMFKN 470 (546)
Q Consensus 391 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 470 (546)
...+..|.... .-...-.--+..++...|+.++|..+|..... .++ -|..|. ..+.|..-.. . ....
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~LA--a~~Lg~~~~~----~-~~~~ 371 (450)
T d1qsaa1 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVA--AQRIGEEYEL----K-IDKA 371 (450)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHH--HHHTTCCCCC----C-CCCC
T ss_pred HHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHHH--HHHcCCCCCC----C-cCCC
Confidence 88887764321 11233334456777888888888888888764 233 233222 2222221000 0 0000
Q ss_pred CCCCC-HH---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcChhhHHHHHHHHH
Q 009011 471 DVSMD-AG---TYASLVRGLIESGKLELACSFFEEMISKGIVPYHSTYKMLEEKLEKKRLGNAKERINKLL 537 (546)
Q Consensus 471 ~~~~~-~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 537 (546)
...+. .. .--.-+..+...|...+|...|..+.+.. +......+.....+.|..+.+.......
T Consensus 372 ~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~---~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 372 PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK---SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC---CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 00000 00 01123566778999999999999887542 5666667777788899999888765544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.09 E-value=5.2 Score=28.84 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=7.2
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 009011 275 GWCKTRKVDDAQKAMKEMF 293 (546)
Q Consensus 275 ~~~~~g~~~~a~~~~~~m~ 293 (546)
+|.+.|++++|.+.++.+.
T Consensus 82 ~yyklgdy~~A~~~~~~~L 100 (124)
T d2pqrb1 82 GCYKLGEYSMAKRYVDTLF 100 (124)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 3333333333333333333
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.37 E-value=4.5 Score=27.57 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009011 459 VLNFLLTHMFKNDVSMDAGTYASLVRGLIESGKLELACSFFEEMISK 505 (546)
Q Consensus 459 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 505 (546)
++.+-++.+...+..|++.+..+-+.+|-+.+++.-|.++|+..+.+
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33444444444555555555555555665566666666655555543
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| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.54 E-value=5 Score=27.37 Aligned_cols=61 Identities=11% Similarity=0.169 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCHHHHHHHH
Q 009011 213 YDDAVEAFRGMKKYGVEKDTRALSVLMDTLVKGNSVEHAYKVFLEFKDCIPLSSQIFNILI 273 (546)
Q Consensus 213 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li 273 (546)
.-+..+-++.+....+.|++....+.+.+|-+.+++..|.++++.++.....+...|..++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil 82 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3345555666666667777777777777777778888777777777664433444555544
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